Query 004218
Match_columns 767
No_of_seqs 863 out of 5976
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 18:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4asz_A BDNF/NT-3 growth factor 100.0 2.5E-53 8.7E-58 433.8 16.7 264 455-754 13-290 (299)
2 4aoj_A High affinity nerve gro 100.0 1.3E-52 4.5E-57 434.7 19.9 263 455-753 41-319 (329)
3 4fih_A Serine/threonine-protei 100.0 1.7E-52 5.7E-57 432.3 17.5 248 455-747 74-324 (346)
4 3omv_A RAF proto-oncogene seri 100.0 2.5E-52 8.6E-57 425.9 18.5 259 454-755 35-302 (307)
5 4g3f_A NF-kappa-beta-inducing 100.0 3.9E-52 1.3E-56 428.4 18.8 265 454-761 57-324 (336)
6 3fpq_A Serine/threonine-protei 100.0 6.9E-52 2.4E-56 419.6 19.5 248 458-747 29-283 (290)
7 4gt4_A Tyrosine-protein kinase 100.0 4.3E-52 1.5E-56 426.6 17.8 260 455-750 26-303 (308)
8 4b9d_A Serine/threonine-protei 100.0 2.3E-52 8E-57 431.9 15.7 251 455-747 24-277 (350)
9 4fie_A Serine/threonine-protei 100.0 2.7E-51 9.1E-56 433.9 18.2 248 455-747 151-401 (423)
10 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.4E-51 4.9E-56 418.8 12.5 249 455-746 32-284 (311)
11 3rgz_A Protein brassinosteroid 100.0 1.4E-49 4.6E-54 465.8 31.0 391 1-393 268-752 (768)
12 3hyh_A Carbon catabolite-derep 100.0 1.7E-50 5.9E-55 405.6 18.9 246 455-747 13-263 (275)
13 4ase_A Vascular endothelial gr 100.0 8E-51 2.7E-55 424.5 14.4 273 448-754 57-348 (353)
14 3hmm_A TGF-beta receptor type- 100.0 2.4E-50 8.2E-55 415.3 14.3 277 455-753 3-297 (303)
15 3ubd_A Ribosomal protein S6 ki 100.0 3.5E-50 1.2E-54 408.9 11.4 247 455-746 24-281 (304)
16 4g31_A Eukaryotic translation 100.0 2.1E-49 7.1E-54 405.8 15.9 261 455-747 5-280 (299)
17 3rgz_A Protein brassinosteroid 100.0 1.5E-46 5.3E-51 439.9 30.1 372 1-382 246-716 (768)
18 4b99_A Mitogen-activated prote 100.0 2.1E-47 7.2E-52 406.0 15.3 280 455-747 54-345 (398)
19 4f9c_A Cell division cycle 7-r 100.0 6.3E-47 2.1E-51 398.3 13.1 207 450-675 16-251 (361)
20 3v5w_A G-protein coupled recep 100.0 2E-45 6.9E-50 405.8 17.4 248 455-747 189-450 (689)
21 3uto_A Twitchin; kinase, muscl 100.0 8.7E-45 3E-49 405.6 17.3 251 454-747 156-411 (573)
22 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-43 1.1E-47 416.2 30.8 373 1-384 47-561 (844)
23 4eco_A Uncharacterized protein 100.0 3.5E-43 1.2E-47 401.9 26.3 356 13-386 194-603 (636)
24 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-43 1.7E-47 401.3 26.9 210 174-385 346-560 (606)
25 3fxz_A Serine/threonine-protei 100.0 3.5E-43 1.2E-47 363.6 19.3 250 454-747 19-270 (297)
26 3t6q_A CD180 antigen; protein- 100.0 1.7E-42 6E-47 396.8 26.9 380 1-385 80-562 (606)
27 4eco_A Uncharacterized protein 100.0 2.7E-42 9.3E-47 394.6 28.1 364 3-382 82-578 (636)
28 2qkw_B Protein kinase; three-h 100.0 3.2E-43 1.1E-47 368.9 18.3 285 445-753 29-315 (321)
29 3s95_A LIMK-1, LIM domain kina 100.0 5.1E-43 1.7E-47 365.6 19.5 270 454-758 9-287 (310)
30 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-41 9.6E-46 392.1 31.0 382 1-385 72-624 (680)
31 3t6q_A CD180 antigen; protein- 100.0 5.4E-41 1.9E-45 384.4 32.5 369 3-381 34-487 (606)
32 4ecn_A Leucine-rich repeat pro 100.0 3.7E-41 1.3E-45 390.6 30.7 363 3-384 324-841 (876)
33 3uim_A Brassinosteroid insensi 100.0 9.6E-43 3.3E-47 366.3 15.8 289 440-750 15-308 (326)
34 3p86_A Serine/threonine-protei 100.0 6.8E-43 2.3E-47 363.3 14.4 268 448-757 30-302 (309)
35 2c30_A Serine/threonine-protei 100.0 4.5E-42 1.5E-46 359.4 20.6 263 442-747 22-295 (321)
36 2psq_A Fibroblast growth facto 100.0 6.2E-42 2.1E-46 365.2 19.6 266 454-755 80-366 (370)
37 3fe3_A MAP/microtubule affinit 100.0 2.1E-42 7.3E-47 361.8 14.9 250 452-747 12-265 (328)
38 3kul_A Ephrin type-A receptor 100.0 3.3E-42 1.1E-46 361.0 16.3 264 454-757 48-317 (325)
39 2z63_A TOLL-like receptor 4, v 100.0 3.3E-41 1.1E-45 383.5 25.4 370 3-385 29-533 (570)
40 4hcu_A Tyrosine-protein kinase 100.0 7.3E-42 2.5E-46 349.0 17.7 257 454-753 9-266 (269)
41 3zgw_A Maternal embryonic leuc 100.0 5.1E-42 1.7E-46 360.8 16.8 251 453-748 8-262 (347)
42 3tki_A Serine/threonine-protei 100.0 4.9E-42 1.7E-46 359.2 16.5 254 454-747 6-262 (323)
43 2z7x_B TOLL-like receptor 1, v 100.0 4.4E-41 1.5E-45 377.6 25.1 358 5-385 3-483 (520)
44 3soc_A Activin receptor type-2 100.0 1.8E-42 6.1E-47 363.0 12.6 285 454-754 23-319 (322)
45 3ugc_A Tyrosine-protein kinase 100.0 2.2E-42 7.4E-47 358.1 12.8 278 454-755 9-293 (295)
46 2yab_A Death-associated protei 100.0 1.4E-41 4.9E-46 359.7 18.9 252 454-747 11-273 (361)
47 3cbl_A C-FES, proto-oncogene t 100.0 5.3E-42 1.8E-46 367.2 14.2 260 454-754 113-375 (377)
48 4eqm_A Protein kinase; transfe 100.0 1.2E-41 4.3E-46 351.6 16.3 260 454-752 10-274 (294)
49 3v47_A TOLL-like receptor 5B a 100.0 9.7E-41 3.3E-45 368.4 24.4 368 5-385 13-410 (455)
50 3q4u_A Activin receptor type-1 100.0 2.6E-41 9E-46 351.3 18.7 269 453-751 6-300 (301)
51 1o6l_A RAC-beta serine/threoni 100.0 4.2E-41 1.4E-45 352.9 19.8 249 454-747 4-261 (337)
52 2nru_A Interleukin-1 receptor- 100.0 7.4E-41 2.5E-45 348.8 21.4 284 441-753 11-306 (307)
53 2qol_A Ephrin receptor; recept 100.0 1.8E-41 6E-46 361.9 16.8 262 454-755 44-311 (373)
54 3l9p_A Anaplastic lymphoma kin 100.0 1.8E-41 6E-46 361.5 16.7 267 454-756 70-348 (367)
55 3v47_A TOLL-like receptor 5B a 100.0 1.2E-40 4.2E-45 367.5 24.1 357 2-367 30-415 (455)
56 3gen_A Tyrosine-protein kinase 100.0 3.8E-41 1.3E-45 346.6 18.6 259 453-754 22-281 (283)
57 3vq2_A TLR4, TOLL-like recepto 100.0 6.5E-41 2.2E-45 383.7 22.5 370 2-383 32-534 (606)
58 4ecn_A Leucine-rich repeat pro 100.0 7.2E-41 2.5E-45 388.2 22.8 365 1-384 447-865 (876)
59 3sxs_A Cytoplasmic tyrosine-pr 100.0 2.2E-41 7.6E-46 345.3 16.1 257 454-753 7-264 (268)
60 2eva_A TAK1 kinase - TAB1 chim 100.0 4.9E-41 1.7E-45 349.5 18.8 259 455-757 8-267 (307)
61 4euu_A Serine/threonine-protei 100.0 7.6E-41 2.6E-45 350.5 19.4 282 454-751 8-307 (319)
62 2y0a_A Death-associated protei 100.0 7E-41 2.4E-45 351.2 18.6 252 454-747 10-272 (326)
63 4fr4_A YANK1, serine/threonine 100.0 8.4E-41 2.9E-45 355.6 19.5 249 454-746 14-271 (384)
64 1tki_A Titin; serine kinase, m 100.0 5.4E-41 1.8E-45 350.8 17.6 253 454-748 4-259 (321)
65 3qup_A Tyrosine-protein kinase 100.0 4.6E-41 1.6E-45 353.0 17.1 274 452-756 20-301 (323)
66 3vhe_A Vascular endothelial gr 100.0 1.8E-41 6E-46 362.0 13.9 277 445-755 12-357 (359)
67 4dc2_A Protein kinase C IOTA t 100.0 6.3E-41 2.1E-45 357.7 18.0 200 454-673 51-255 (396)
68 3niz_A Rhodanese family protei 100.0 5.5E-41 1.9E-45 349.7 17.1 274 453-747 19-301 (311)
69 3c0i_A Peripheral plasma membr 100.0 2.2E-41 7.4E-46 358.7 14.3 256 454-747 23-287 (351)
70 3soa_A Calcium/calmodulin-depe 100.0 5.1E-41 1.7E-45 364.8 17.1 252 452-747 8-268 (444)
71 1k9a_A Carboxyl-terminal SRC k 100.0 1.3E-40 4.5E-45 364.5 20.4 254 454-754 192-446 (450)
72 2bdw_A Hypothetical protein K1 100.0 5.8E-41 2E-45 356.3 16.7 251 452-747 26-285 (362)
73 2zv2_A Calcium/calmodulin-depe 100.0 1E-40 3.5E-45 346.0 18.1 251 454-747 12-293 (298)
74 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.5E-40 2.6E-44 370.5 26.8 359 4-385 33-512 (562)
75 3h4j_B AMPK kdaid, SNF1-like p 100.0 6.5E-41 2.2E-45 351.0 16.7 247 454-747 8-259 (336)
76 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-40 6.2E-45 375.4 21.6 368 2-385 26-512 (549)
77 3brb_A Proto-oncogene tyrosine 100.0 9.4E-41 3.2E-45 349.0 17.8 274 451-755 30-310 (313)
78 3tt0_A Basic fibroblast growth 100.0 8.5E-41 2.9E-45 358.7 17.8 267 454-756 68-355 (382)
79 4f0f_A Serine/threonine-protei 100.0 2.1E-40 7.3E-45 341.7 19.8 251 454-750 18-286 (287)
80 3dtc_A Mitogen-activated prote 100.0 5.6E-41 1.9E-45 343.0 15.2 254 454-751 6-271 (271)
81 3txo_A PKC-L, NPKC-ETA, protei 100.0 2.6E-41 8.7E-46 356.9 12.9 250 453-747 21-281 (353)
82 3lb7_A RAF proto-oncogene seri 100.0 9.9E-41 3.4E-45 346.9 17.0 261 453-756 34-303 (307)
83 3poz_A Epidermal growth factor 100.0 1E-40 3.5E-45 350.4 17.2 259 454-754 14-279 (327)
84 3t9t_A Tyrosine-protein kinase 100.0 1.1E-40 3.9E-45 340.0 16.6 257 454-753 7-264 (267)
85 3kex_A Receptor tyrosine-prote 100.0 9.2E-41 3.2E-45 350.6 16.0 259 455-755 13-278 (325)
86 4aw2_A Serine/threonine-protei 100.0 2.6E-41 9E-46 365.5 12.0 260 446-747 65-339 (437)
87 1luf_A Muscle-specific tyrosin 100.0 8E-41 2.7E-45 354.5 15.5 269 451-755 43-337 (343)
88 1kob_A Twitchin; kinase, intra 100.0 1.6E-40 5.3E-45 355.0 17.7 251 454-747 50-305 (387)
89 2w4o_A Calcium/calmodulin-depe 100.0 1.8E-40 6.2E-45 351.1 17.8 250 453-747 51-306 (349)
90 1rjb_A FL cytokine receptor; k 100.0 1.1E-40 3.9E-45 353.4 16.3 270 453-757 43-338 (344)
91 2ivs_A Proto-oncogene tyrosine 100.0 1E-40 3.5E-45 349.1 15.7 264 454-753 22-311 (314)
92 3qd2_B Eukaryotic translation 100.0 2.8E-40 9.5E-45 348.8 18.9 262 453-747 4-326 (332)
93 2pmi_A Negative RE, cyclin-dep 100.0 2.6E-40 8.8E-45 345.7 18.4 206 454-674 4-212 (317)
94 3g33_A Cell division protein k 100.0 5.6E-41 1.9E-45 349.8 13.4 207 453-674 7-222 (308)
95 3j0a_A TOLL-like receptor 5; m 100.0 6.6E-40 2.3E-44 387.7 24.3 373 2-382 24-538 (844)
96 3a8x_A Protein kinase C IOTA t 100.0 2.4E-40 8.3E-45 348.8 18.0 199 455-673 9-212 (345)
97 1ob3_A PFPK5, cell division co 100.0 2.2E-40 7.5E-45 341.6 17.2 200 455-674 2-204 (288)
98 1fot_A TPK1 delta, CAMP-depend 100.0 2.7E-40 9.4E-45 344.2 18.0 246 454-747 5-259 (318)
99 3op5_A Serine/threonine-protei 100.0 3.3E-40 1.1E-44 352.1 19.0 280 453-756 33-332 (364)
100 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-39 1.6E-43 373.3 30.2 123 259-381 389-515 (680)
101 3lxp_A Non-receptor tyrosine-p 100.0 1.3E-40 4.5E-45 348.3 15.4 276 455-757 30-314 (318)
102 3ork_A Serine/threonine protei 100.0 4.5E-41 1.5E-45 350.7 11.8 264 454-751 11-279 (311)
103 1csn_A Casein kinase-1; phosph 100.0 5.9E-40 2E-44 340.6 20.2 268 454-756 9-286 (298)
104 1t46_A HOMO sapiens V-KIT hard 100.0 1.7E-40 5.9E-45 347.2 16.3 267 453-754 21-308 (313)
105 3g2f_A Bone morphogenetic prot 100.0 6.5E-41 2.2E-45 354.0 13.2 296 454-761 12-326 (336)
106 1u59_A Tyrosine-protein kinase 100.0 3.4E-40 1.2E-44 340.1 18.1 269 455-764 9-283 (287)
107 3lxl_A Tyrosine-protein kinase 100.0 5E-41 1.7E-45 353.2 12.0 280 454-756 22-306 (327)
108 1xjd_A Protein kinase C, theta 100.0 9.4E-41 3.2E-45 351.1 14.1 252 450-746 12-269 (345)
109 1mp8_A Focal adhesion kinase 1 100.0 1.8E-40 6.1E-45 341.1 15.8 260 453-755 13-278 (281)
110 2izr_A Casein kinase I isoform 100.0 3.9E-40 1.3E-44 346.7 18.8 266 454-755 8-283 (330)
111 1qcf_A Haematopoetic cell kina 100.0 9.4E-41 3.2E-45 366.4 14.5 259 452-753 185-444 (454)
112 3o0g_A Cell division protein k 100.0 3E-40 1E-44 341.4 17.3 199 455-673 2-204 (292)
113 3dbq_A Dual specificity protei 100.0 7.6E-41 2.6E-45 353.9 13.1 253 454-748 8-275 (343)
114 3ttj_A Mitogen-activated prote 100.0 2.4E-40 8.3E-45 362.7 17.5 274 454-747 61-356 (464)
115 2buj_A Serine/threonine-protei 100.0 1.4E-40 4.7E-45 348.5 14.7 271 454-752 28-305 (317)
116 3kmu_A ILK, integrin-linked ki 100.0 1.4E-40 4.7E-45 340.2 14.2 254 454-752 9-269 (271)
117 3og7_A AKAP9-BRAF fusion prote 100.0 2.1E-40 7.2E-45 341.9 15.6 261 452-752 21-287 (289)
118 3gni_B Strad alpha; kinase fol 100.0 3E-40 1E-44 355.9 17.1 209 454-674 24-240 (389)
119 3v8s_A RHO-associated protein 100.0 9.6E-41 3.3E-45 358.4 13.1 257 448-747 62-330 (410)
120 2yex_A Serine/threonine-protei 100.0 4.6E-40 1.6E-44 337.3 17.6 254 454-747 6-262 (276)
121 3c1x_A Hepatocyte growth facto 100.0 2E-40 6.7E-45 353.2 15.4 264 456-757 90-359 (373)
122 1qpc_A LCK kinase; alpha beta 100.0 2.6E-40 9E-45 339.6 15.8 265 453-760 11-276 (279)
123 4fvq_A Tyrosine-protein kinase 100.0 6.1E-41 2.1E-45 346.2 11.0 258 454-759 7-281 (289)
124 1t4h_A Serine/threonine-protei 100.0 6.5E-40 2.2E-44 338.6 18.6 252 455-747 26-283 (290)
125 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 9.5E-41 3.2E-45 365.9 12.8 265 453-760 182-447 (452)
126 2i0e_A Protein kinase C-beta I 100.0 3.2E-40 1.1E-44 348.2 16.4 202 453-674 18-224 (353)
127 3a62_A Ribosomal protein S6 ki 100.0 4.5E-40 1.5E-44 345.2 17.2 249 454-747 16-277 (327)
128 1rdq_E PKA C-alpha, CAMP-depen 100.0 4E-40 1.4E-44 347.7 16.8 246 454-747 40-294 (350)
129 3kk8_A Calcium/calmodulin depe 100.0 5E-40 1.7E-44 338.5 17.0 250 454-748 5-263 (284)
130 3f66_A Hepatocyte growth facto 100.0 5.1E-40 1.7E-44 340.9 17.2 265 454-756 24-294 (298)
131 2id5_A Lingo-1, leucine rich r 100.0 7.2E-39 2.5E-43 355.3 27.5 345 5-385 14-358 (477)
132 3kfa_A Tyrosine-protein kinase 100.0 5.1E-40 1.7E-44 339.2 17.0 262 452-755 10-273 (288)
133 3uc3_A Serine/threonine-protei 100.0 4.8E-40 1.7E-44 349.3 17.3 249 454-747 19-275 (361)
134 2a2a_A Death-associated protei 100.0 6.6E-40 2.3E-44 343.5 17.9 252 454-747 11-273 (321)
135 2ac3_A MAP kinase-interacting 100.0 5.3E-40 1.8E-44 343.9 17.0 274 454-747 11-296 (316)
136 4hgt_A Casein kinase I isoform 100.0 1.1E-39 3.7E-44 338.2 19.0 271 452-756 6-283 (296)
137 1xbb_A Tyrosine-protein kinase 100.0 1.4E-40 4.8E-45 343.7 12.2 269 452-762 13-288 (291)
138 1byg_A CSK, protein (C-termina 100.0 3.2E-40 1.1E-44 338.6 14.8 254 454-754 20-274 (278)
139 2wqm_A Serine/threonine-protei 100.0 8.8E-40 3E-44 341.1 18.2 268 454-759 31-303 (310)
140 2zmd_A Dual specificity protei 100.0 2E-40 6.8E-45 356.0 13.7 251 455-747 56-321 (390)
141 4e5w_A Tyrosine-protein kinase 100.0 3E-40 1E-44 343.4 14.6 275 454-752 20-301 (302)
142 3p1a_A MYT1 kinase, membrane-a 100.0 1.5E-40 5.3E-45 346.4 12.4 246 454-747 56-305 (311)
143 3kn6_A Ribosomal protein S6 ki 100.0 1.6E-40 5.6E-45 348.0 12.6 249 460-747 16-271 (325)
144 2pvf_A Fibroblast growth facto 100.0 5.9E-40 2E-44 346.0 17.0 267 454-756 34-321 (334)
145 2v62_A Serine/threonine-protei 100.0 3.3E-40 1.1E-44 349.4 15.0 274 454-752 36-327 (345)
146 3cc6_A Protein tyrosine kinase 100.0 6.2E-40 2.1E-44 337.1 16.5 260 453-755 10-275 (281)
147 2x4f_A Myosin light chain kina 100.0 4.7E-40 1.6E-44 350.6 16.1 245 460-747 94-343 (373)
148 1opk_A P150, C-ABL, proto-onco 100.0 2.9E-40 9.9E-45 365.8 14.9 256 454-751 219-476 (495)
149 2h34_A Serine/threonine-protei 100.0 4.5E-40 1.5E-44 342.7 15.5 261 453-756 32-299 (309)
150 3lzb_A Epidermal growth factor 100.0 6.4E-40 2.2E-44 344.0 16.7 260 454-755 14-280 (327)
151 2vd5_A DMPK protein; serine/th 100.0 1.9E-40 6.5E-45 356.3 12.9 211 446-674 52-273 (412)
152 3f3z_A Calcium/calmodulin-depe 100.0 1.2E-39 4E-44 334.4 18.2 252 453-747 7-262 (277)
153 3fdn_A Serine/threonine-protei 100.0 1E-39 3.4E-44 335.2 17.4 249 453-748 7-259 (279)
154 1nxk_A MAP kinase-activated pr 100.0 2.1E-39 7.2E-44 349.0 20.7 252 454-747 60-322 (400)
155 2xir_A Vascular endothelial gr 100.0 3.6E-40 1.2E-44 345.3 14.1 276 446-755 18-312 (316)
156 1mqb_A Ephrin type-A receptor 100.0 1.1E-39 3.9E-44 343.2 18.0 263 455-757 44-313 (333)
157 3rp9_A Mitogen-activated prote 100.0 8.8E-40 3E-44 360.0 17.9 204 454-667 52-280 (458)
158 2w1i_A JAK2; chromosomal rearr 100.0 3.3E-40 1.1E-44 346.7 13.7 278 454-755 40-324 (326)
159 3oz6_A Mitogen-activated prote 100.0 5.9E-40 2E-44 353.4 15.9 209 452-674 6-234 (388)
160 3uzp_A CKI-delta, CKID, casein 100.0 2E-39 7E-44 336.1 19.3 269 454-756 8-283 (296)
161 2i1m_A Macrophage colony-stimu 100.0 5.5E-40 1.9E-44 346.4 15.2 275 450-759 41-332 (333)
162 2eue_A Carbon catabolite derep 100.0 1.5E-39 5.1E-44 333.1 17.7 247 454-747 12-263 (275)
163 2a19_B Interferon-induced, dou 100.0 7.6E-40 2.6E-44 337.2 15.6 258 453-757 9-278 (284)
164 2y94_A 5'-AMP-activated protei 100.0 8.8E-40 3E-44 357.2 16.9 248 454-747 15-267 (476)
165 2acx_A G protein-coupled recep 100.0 1.1E-39 3.7E-44 360.6 17.8 252 454-747 183-445 (576)
166 2r5t_A Serine/threonine-protei 100.0 5.6E-40 1.9E-44 348.8 14.8 250 454-748 37-291 (373)
167 3is5_A Calcium-dependent prote 100.0 6.9E-40 2.4E-44 337.2 15.0 252 454-747 21-279 (285)
168 3n9x_A Phosphotransferase; mal 100.0 6.9E-40 2.4E-44 357.1 15.7 210 454-673 25-254 (432)
169 3hko_A Calcium/calmodulin-depe 100.0 9.5E-40 3.2E-44 346.5 16.2 265 450-747 21-331 (345)
170 3i6u_A CDS1, serine/threonine- 100.0 2.6E-39 8.8E-44 350.8 19.9 254 452-747 132-400 (419)
171 3pls_A Macrophage-stimulating 100.0 2.5E-39 8.6E-44 335.8 19.0 265 456-757 22-291 (298)
172 3dls_A PAS domain-containing s 100.0 8.2E-40 2.8E-44 344.0 15.5 243 453-747 22-275 (335)
173 3pg1_A Mitogen-activated prote 100.0 9.5E-40 3.2E-44 348.8 15.8 285 446-747 13-317 (362)
174 3mdy_A Bone morphogenetic prot 100.0 4.7E-39 1.6E-43 340.1 20.9 284 445-755 27-333 (337)
175 2z7x_B TOLL-like receptor 1, v 100.0 6.8E-39 2.3E-43 359.8 23.2 344 2-365 21-486 (520)
176 2yfx_A Tyrosine-protein kinase 100.0 1.6E-39 5.4E-44 341.8 17.0 267 454-756 29-307 (327)
177 1u5q_A Serine/threonine protei 100.0 5E-40 1.7E-44 347.1 13.1 246 455-747 54-306 (348)
178 2z63_A TOLL-like receptor 4, v 100.0 7.7E-39 2.6E-43 364.0 23.8 365 4-382 9-506 (570)
179 1p4o_A Insulin-like growth fac 100.0 3.4E-40 1.2E-44 346.4 11.6 268 448-751 18-297 (322)
180 4eut_A Serine/threonine-protei 100.0 1.2E-39 3.9E-44 351.5 16.0 284 454-753 8-309 (396)
181 4ejn_A RAC-alpha serine/threon 100.0 8E-40 2.7E-44 358.6 14.4 250 453-747 146-405 (446)
182 2w5a_A Serine/threonine-protei 100.0 7.3E-40 2.5E-44 336.3 13.1 257 454-748 5-269 (279)
183 1b6c_B TGF-B superfamily recep 100.0 3.7E-39 1.3E-43 341.6 18.9 281 444-754 31-337 (342)
184 2jii_A Serine/threonine-protei 100.0 7.7E-40 2.6E-44 347.7 13.5 271 455-756 42-339 (352)
185 2j7t_A Serine/threonine-protei 100.0 1.6E-39 5.5E-44 337.9 15.5 253 453-747 17-276 (302)
186 3gxj_A TGF-beta receptor type- 100.0 4.3E-41 1.5E-45 350.0 3.3 266 454-753 2-297 (303)
187 3bhy_A Death-associated protei 100.0 3.4E-39 1.1E-43 332.1 17.4 252 454-747 4-266 (283)
188 3cok_A Serine/threonine-protei 100.0 2.3E-39 7.8E-44 332.4 16.0 250 454-747 10-263 (278)
189 3ll6_A Cyclin G-associated kin 100.0 2.1E-39 7E-44 342.9 16.1 270 453-756 26-311 (337)
190 2qr7_A Ribosomal protein S6 ki 100.0 3.5E-40 1.2E-44 347.2 10.0 249 453-747 20-278 (342)
191 3qyz_A Mitogen-activated prote 100.0 2.1E-39 7.2E-44 345.8 16.0 279 454-747 26-314 (364)
192 2clq_A Mitogen-activated prote 100.0 3.1E-39 1.1E-43 334.6 16.8 253 456-747 23-279 (295)
193 3a7i_A MST3 kinase, serine/thr 100.0 4.5E-39 1.5E-43 334.6 18.1 250 454-748 21-272 (303)
194 2jam_A Calcium/calmodulin-depe 100.0 2.4E-39 8.3E-44 336.7 16.0 248 454-747 8-262 (304)
195 3llt_A Serine/threonine kinase 100.0 8.1E-40 2.8E-44 349.0 12.7 209 443-674 23-262 (360)
196 3mtl_A Cell division protein k 100.0 6E-40 2.1E-44 344.1 11.4 272 455-747 2-282 (324)
197 2ozo_A Tyrosine-protein kinase 100.0 3.9E-39 1.3E-43 365.0 19.0 255 462-757 343-602 (613)
198 3c4z_A Rhodopsin kinase; Ser/T 100.0 5E-39 1.7E-43 354.8 19.1 205 454-674 184-392 (543)
199 3gbz_A Kinase, CMGC CDK; ssgci 100.0 1.7E-39 5.9E-44 341.4 14.6 204 450-674 29-241 (329)
200 3eqc_A Dual specificity mitoge 100.0 1.6E-39 5.3E-44 346.7 14.4 199 454-674 32-233 (360)
201 3mi9_A Cell division protein k 100.0 2.4E-39 8.2E-44 344.0 15.7 210 454-674 16-232 (351)
202 4g8a_A TOLL-like receptor 4; l 100.0 5E-38 1.7E-42 362.4 28.0 375 2-385 52-582 (635)
203 4agu_A Cyclin-dependent kinase 100.0 3.5E-39 1.2E-43 336.9 16.4 200 455-674 3-206 (311)
204 1fvr_A Tyrosine-protein kinase 100.0 3.8E-39 1.3E-43 338.8 16.9 261 455-754 25-301 (327)
205 2h8h_A Proto-oncogene tyrosine 100.0 5.3E-40 1.8E-44 367.0 10.5 260 453-755 265-525 (535)
206 3lm5_A Serine/threonine-protei 100.0 2.3E-39 7.7E-44 340.2 14.6 262 444-747 17-288 (327)
207 1cm8_A Phosphorylated MAP kina 100.0 1.5E-39 5.3E-44 346.3 13.4 273 454-747 24-308 (367)
208 2xrw_A Mitogen-activated prote 100.0 5.7E-39 1.9E-43 343.1 17.5 275 454-748 24-320 (371)
209 4fl3_A Tyrosine-protein kinase 100.0 5E-39 1.7E-43 364.9 17.9 253 461-755 375-633 (635)
210 2fst_X Mitogen-activated prote 100.0 1.4E-39 4.9E-44 346.1 12.2 273 454-747 28-312 (367)
211 3com_A Serine/threonine-protei 100.0 7.8E-39 2.7E-43 334.7 17.6 251 452-747 26-279 (314)
212 2vgo_A Serine/threonine-protei 100.0 8.7E-39 3E-43 329.1 17.3 247 454-747 13-263 (284)
213 2rku_A Serine/threonine-protei 100.0 7.9E-39 2.7E-43 331.2 17.0 249 454-747 14-266 (294)
214 3nsz_A CK II alpha, casein kin 100.0 9.9E-39 3.4E-43 336.4 18.0 196 454-674 35-234 (330)
215 2i6l_A Mitogen-activated prote 100.0 4.3E-39 1.5E-43 337.8 14.8 278 454-747 10-306 (320)
216 2y7j_A Phosphorylase B kinase 100.0 1.1E-38 3.9E-43 339.6 18.2 258 447-747 86-360 (365)
217 3lij_A Calcium/calmodulin depe 100.0 8.4E-39 2.9E-43 355.1 17.8 248 454-747 36-292 (494)
218 1ua2_A CAK, cell division prot 100.0 7E-39 2.4E-43 339.3 16.3 204 451-674 6-216 (346)
219 3e7e_A HBUB1, BUB1A, mitotic c 100.0 8.6E-39 2.9E-43 341.4 17.1 258 452-754 62-340 (365)
220 3mwu_A Calmodulin-domain prote 100.0 1E-38 3.6E-43 353.8 18.1 250 453-747 20-277 (486)
221 2owb_A Serine/threonine-protei 100.0 7.4E-39 2.5E-43 337.5 16.0 249 454-747 40-292 (335)
222 1vzo_A Ribosomal protein S6 ki 100.0 4.8E-39 1.6E-43 341.3 14.5 253 454-748 53-323 (355)
223 1x8b_A WEE1HU, WEE1-like prote 100.0 8.2E-39 2.8E-43 330.3 15.6 248 453-747 9-280 (289)
224 3nyv_A Calmodulin-domain prote 100.0 7.3E-39 2.5E-43 355.3 16.3 248 454-747 25-282 (484)
225 2x7f_A TRAF2 and NCK-interacti 100.0 3.2E-39 1.1E-43 339.6 12.5 265 446-747 15-287 (326)
226 2h6d_A 5'-AMP-activated protei 100.0 1.8E-38 6.3E-43 325.3 17.7 248 454-747 10-262 (276)
227 2ycf_A Serine/threonine-protei 100.0 1.9E-38 6.5E-43 332.7 18.1 252 453-746 8-274 (322)
228 3eb0_A Putative uncharacterize 100.0 9.1E-39 3.1E-43 343.3 16.0 207 451-674 3-245 (383)
229 2b9h_A MAP kinase FUS3, mitoge 100.0 4.1E-39 1.4E-43 342.7 13.1 282 454-747 10-306 (353)
230 3sv0_A Casein kinase I-like; t 100.0 3.6E-38 1.2E-42 345.1 20.6 267 454-754 6-279 (483)
231 4aaa_A Cyclin-dependent kinase 100.0 7.2E-39 2.5E-43 337.2 14.5 201 454-674 24-228 (331)
232 2pml_X PFPK7, Ser/Thr protein 100.0 7.1E-39 2.4E-43 340.2 14.4 265 454-747 30-323 (348)
233 3q5i_A Protein kinase; CDPK, m 100.0 2.3E-38 7.7E-43 352.6 19.1 251 453-747 34-302 (504)
234 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.8E-38 2.3E-42 354.5 23.3 345 2-366 52-516 (562)
235 1u46_A ACK-1, activated CDC42 100.0 2.9E-39 1E-43 334.1 10.7 261 454-755 17-286 (291)
236 2r3i_A Cell division protein k 100.0 1.9E-38 6.5E-43 329.3 16.7 201 455-674 3-207 (299)
237 3fme_A Dual specificity mitoge 100.0 6.6E-39 2.3E-43 331.2 13.0 255 454-747 6-267 (290)
238 3pfq_A PKC-B, PKC-beta, protei 100.0 2E-38 6.8E-43 362.4 17.9 251 452-747 338-598 (674)
239 2z81_A CD282 antigen, TOLL-lik 100.0 5.3E-38 1.8E-42 355.2 21.1 346 1-365 49-515 (549)
240 3an0_A Dual specificity mitoge 100.0 1.5E-38 5.2E-43 336.3 15.6 256 453-747 49-311 (340)
241 1blx_A Cyclin-dependent kinase 100.0 7E-39 2.4E-43 337.0 12.9 208 452-674 8-222 (326)
242 1o6v_A Internalin A; bacterial 100.0 4.2E-37 1.4E-41 339.4 27.6 345 2-385 46-390 (466)
243 3byv_A Rhoptry kinase; malaria 100.0 2.3E-39 7.9E-44 347.1 8.6 258 454-754 72-369 (377)
244 3cek_A Dual specificity protei 100.0 1.1E-38 3.8E-43 333.1 13.6 258 449-748 22-294 (313)
245 2wtk_C Serine/threonine-protei 100.0 5.8E-38 2E-42 326.6 18.7 255 453-747 3-264 (305)
246 2y4i_B KSR2, HKSR2, kinase sup 100.0 5.3E-39 1.8E-43 336.8 10.0 270 451-761 29-310 (319)
247 3q60_A ROP5B; pseudokinase, tr 100.0 9.4E-39 3.2E-43 341.7 12.1 252 454-746 61-352 (371)
248 3kvw_A DYRK2, dual specificity 100.0 2E-38 6.9E-43 344.7 14.8 198 454-674 96-302 (429)
249 4e7w_A Glycogen synthase kinas 100.0 3E-38 1E-42 339.8 15.4 204 454-674 39-245 (394)
250 3rgf_A Cyclin-dependent kinase 100.0 2.2E-38 7.7E-43 342.9 13.6 208 455-674 20-239 (405)
251 1phk_A Phosphorylase kinase; g 100.0 5.3E-38 1.8E-42 325.8 15.8 252 452-746 14-283 (298)
252 4exu_A Mitogen-activated prote 100.0 4.4E-38 1.5E-42 336.2 15.5 272 454-747 41-324 (371)
253 2vwi_A Serine/threonine-protei 100.0 1.6E-38 5.4E-43 330.7 11.3 272 452-747 12-288 (303)
254 1j1b_A Glycogen synthase kinas 100.0 5.3E-38 1.8E-42 340.6 15.5 204 454-674 53-260 (420)
255 1zy4_A Serine/threonine-protei 100.0 5.8E-38 2E-42 326.4 15.1 260 453-747 4-284 (303)
256 3e3p_A Protein kinase, putativ 100.0 1.1E-37 3.8E-42 332.7 17.4 213 448-674 16-235 (360)
257 2j0j_A Focal adhesion kinase 1 100.0 7.4E-38 2.5E-42 356.7 15.8 259 453-754 388-652 (656)
258 2wei_A Calmodulin-domain prote 100.0 1.6E-37 5.5E-42 320.1 16.8 253 451-747 18-277 (287)
259 3fhr_A MAP kinase-activated pr 100.0 1.1E-37 3.7E-42 328.4 15.7 254 453-748 26-289 (336)
260 1o6v_A Internalin A; bacterial 100.0 2.8E-36 9.4E-41 332.9 27.4 326 1-364 67-392 (466)
261 2vx3_A Dual specificity tyrosi 100.0 5.3E-38 1.8E-42 337.2 11.6 203 451-674 50-261 (382)
262 1wak_A Serine/threonine-protei 100.0 2.3E-37 8E-42 335.0 16.1 205 454-676 36-298 (397)
263 1z57_A Dual specificity protei 100.0 2.8E-37 9.5E-42 326.8 15.1 198 454-674 13-237 (339)
264 3p23_A Serine/threonine-protei 100.0 1.2E-37 4.2E-42 337.9 12.2 252 453-746 22-283 (432)
265 3a99_A Proto-oncogene serine/t 100.0 9.8E-38 3.4E-42 326.6 11.0 246 449-747 37-294 (320)
266 3coi_A Mitogen-activated prote 100.0 2.2E-37 7.5E-42 329.0 13.2 272 454-747 23-306 (353)
267 2iwi_A Serine/threonine-protei 100.0 2.4E-37 8.2E-42 323.0 12.9 246 449-747 25-284 (312)
268 2id5_A Lingo-1, leucine rich r 100.0 2.9E-36 9.8E-41 334.4 22.2 302 2-336 32-333 (477)
269 3o6n_A APL1; leucine-rich repe 100.0 5.7E-36 2E-40 322.7 23.7 333 26-385 44-376 (390)
270 2rio_A Serine/threonine-protei 100.0 2.2E-37 7.6E-42 337.3 12.5 257 455-746 15-295 (434)
271 3aln_A Dual specificity mitoge 100.0 4.8E-37 1.7E-41 322.9 13.9 256 454-747 21-286 (327)
272 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-35 8.4E-40 339.9 29.2 358 1-365 75-585 (635)
273 1q8y_A SR protein kinase; tran 100.0 3E-37 1E-41 331.1 11.8 203 454-674 18-238 (373)
274 3qa8_A MGC80376 protein; kinas 100.0 6.4E-37 2.2E-41 341.4 14.2 207 454-673 13-225 (676)
275 2eu9_A Dual specificity protei 100.0 1.3E-36 4.3E-41 324.0 14.7 198 454-674 18-242 (355)
276 2dyl_A Dual specificity mitoge 100.0 9.9E-37 3.4E-41 319.4 13.3 251 454-747 24-284 (318)
277 3oja_B Anopheles plasmodium-re 100.0 1.9E-35 6.6E-40 336.1 24.3 334 26-386 50-383 (597)
278 3uqc_A Probable conserved tran 100.0 3.1E-36 1E-40 309.0 14.1 231 454-756 30-268 (286)
279 2pzi_A Probable serine/threoni 100.0 6.4E-36 2.2E-40 344.6 15.7 247 454-754 79-329 (681)
280 4fmz_A Internalin; leucine ric 100.0 2.6E-34 8.7E-39 304.9 26.6 305 25-360 42-346 (347)
281 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-34 7.4E-39 314.8 26.1 298 1-337 41-353 (457)
282 4fmz_A Internalin; leucine ric 100.0 3.6E-34 1.2E-38 303.7 26.2 304 1-336 43-346 (347)
283 3o6n_A APL1; leucine-rich repe 100.0 2.2E-34 7.4E-39 310.4 22.9 313 48-385 42-354 (390)
284 3m2w_A MAP kinase-activated pr 100.0 4.9E-35 1.7E-39 303.2 17.0 231 454-747 16-257 (299)
285 3dzo_A Rhoptry kinase domain; 100.0 1.3E-35 4.3E-40 321.2 12.1 251 454-747 77-364 (413)
286 3bz5_A Internalin-J, INLJ; leu 100.0 6.9E-34 2.4E-38 310.8 25.5 316 1-366 63-393 (457)
287 2vuw_A Serine/threonine-protei 100.0 2.9E-36 9.8E-41 318.1 5.3 196 454-672 19-278 (336)
288 3oja_B Anopheles plasmodium-re 100.0 6.3E-34 2.2E-38 323.6 23.0 312 49-385 49-360 (597)
289 1xku_A Decorin; proteoglycan, 100.0 4.2E-33 1.4E-37 293.0 26.6 295 3-358 32-330 (330)
290 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-33 8.6E-38 294.9 24.1 304 11-358 13-331 (332)
291 2ft3_A Biglycan; proteoglycan, 100.0 9.5E-33 3.3E-37 290.5 26.9 218 4-239 35-254 (332)
292 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-34 8E-39 299.4 13.9 253 105-385 50-306 (313)
293 1jl5_A Outer protein YOPM; leu 100.0 5.3E-33 1.8E-37 303.5 24.0 330 2-384 11-371 (454)
294 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-33 3.8E-38 294.3 14.0 255 75-362 50-307 (313)
295 1jl5_A Outer protein YOPM; leu 100.0 1.1E-31 3.6E-36 293.3 29.5 322 3-384 72-410 (454)
296 1xku_A Decorin; proteoglycan, 100.0 4.7E-32 1.6E-36 285.0 25.3 287 52-380 32-329 (330)
297 1z7x_W Ribonuclease inhibitor; 100.0 5.3E-36 1.8E-40 331.1 -10.2 358 1-362 2-413 (461)
298 1z7x_W Ribonuclease inhibitor; 100.0 2E-33 6.9E-38 310.4 -7.7 356 1-361 27-441 (461)
299 2z66_A Variable lymphocyte rec 100.0 7E-30 2.4E-34 265.4 14.9 254 105-385 28-289 (306)
300 2z80_A TOLL-like receptor 2, v 100.0 4.5E-30 1.5E-34 272.5 13.3 278 30-339 34-317 (353)
301 2z66_A Variable lymphocyte rec 100.0 1.2E-29 4E-34 263.8 15.6 282 5-323 10-298 (306)
302 2z80_A TOLL-like receptor 2, v 100.0 1.2E-29 4.2E-34 269.1 16.2 256 107-365 54-319 (353)
303 4fcg_A Uncharacterized protein 100.0 9.9E-29 3.4E-33 258.3 18.8 231 2-239 81-314 (328)
304 3zyi_A Leucine-rich repeat-con 100.0 1.6E-28 5.6E-33 269.6 21.0 228 132-362 77-305 (452)
305 3zyj_A Leucine-rich repeat-con 100.0 1.9E-28 6.4E-33 268.1 21.1 248 107-384 45-293 (440)
306 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-28 3.8E-33 253.5 18.0 226 5-241 14-240 (285)
307 3oja_A Leucine-rich immune mol 100.0 1.1E-30 3.8E-35 288.1 2.2 214 132-360 36-250 (487)
308 4fcg_A Uncharacterized protein 100.0 2E-28 6.8E-33 256.0 18.7 236 105-362 81-316 (328)
309 3g06_A SSPH2 (leucine-rich rep 100.0 9.3E-28 3.2E-32 269.7 25.3 268 3-347 41-308 (622)
310 3zyi_A Leucine-rich repeat-con 100.0 2.6E-28 8.9E-33 268.0 20.3 248 132-385 56-305 (452)
311 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-28 5.2E-33 252.4 17.3 248 108-384 14-262 (285)
312 3zyj_A Leucine-rich repeat-con 100.0 3E-28 1E-32 266.4 20.6 223 132-384 45-269 (440)
313 3o53_A Protein LRIM1, AGAP0063 100.0 8.4E-30 2.9E-34 265.7 6.1 257 4-307 12-270 (317)
314 1wwl_A Monocyte differentiatio 100.0 3.8E-29 1.3E-33 260.1 7.3 248 103-362 41-311 (312)
315 3g06_A SSPH2 (leucine-rich rep 100.0 1E-26 3.5E-31 261.3 26.5 262 28-365 41-302 (622)
316 4azs_A Methyltransferase WBDD; 99.9 2E-29 6.8E-34 281.7 3.9 184 463-670 242-437 (569)
317 1wwl_A Monocyte differentiatio 99.9 1.6E-28 5.6E-33 255.4 9.1 205 23-239 39-266 (312)
318 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-29 2E-33 259.4 3.8 268 29-366 12-282 (317)
319 3oja_A Leucine-rich immune mol 99.9 1.5E-27 5.2E-32 263.0 10.0 236 104-355 33-270 (487)
320 2z62_A TOLL-like receptor 4, v 99.9 9.9E-26 3.4E-30 230.2 18.9 228 110-366 12-243 (276)
321 2z62_A TOLL-like receptor 4, v 99.9 3.7E-25 1.3E-29 226.0 18.5 226 5-242 10-240 (276)
322 3ogk_B Coronatine-insensitive 99.9 7.6E-29 2.6E-33 282.9 -10.8 350 25-381 110-524 (592)
323 3ogk_B Coronatine-insensitive 99.9 3.5E-28 1.2E-32 277.4 -7.2 356 1-362 111-528 (592)
324 1p9a_G Platelet glycoprotein I 99.9 8.5E-25 2.9E-29 224.1 18.5 205 150-385 6-210 (290)
325 2o6q_A Variable lymphocyte rec 99.9 3.4E-24 1.2E-28 217.8 21.5 205 132-364 18-222 (270)
326 2o6q_A Variable lymphocyte rec 99.9 6E-24 2.1E-28 216.0 21.9 201 4-239 18-218 (270)
327 1p9a_G Platelet glycoprotein I 99.9 4.2E-24 1.4E-28 218.9 20.3 202 25-240 8-209 (290)
328 3en9_A Glycoprotease, O-sialog 99.9 6E-26 2.1E-30 252.2 6.7 192 456-672 337-539 (540)
329 3rfs_A Internalin B, repeat mo 99.9 2.4E-24 8E-29 219.2 14.5 204 126-366 38-241 (272)
330 3rfs_A Internalin B, repeat mo 99.9 1E-24 3.5E-29 221.8 11.6 199 28-239 20-218 (272)
331 2p1m_B Transport inhibitor res 99.9 6.5E-27 2.2E-31 267.1 -5.2 351 25-382 103-518 (594)
332 3goz_A Leucine-rich repeat-con 99.9 2.6E-25 9E-30 236.3 3.0 269 6-295 2-304 (362)
333 3goz_A Leucine-rich repeat-con 99.9 6.2E-25 2.1E-29 233.4 3.5 262 31-316 2-301 (362)
334 2p1m_B Transport inhibitor res 99.9 3.8E-26 1.3E-30 260.7 -6.9 351 2-360 105-519 (594)
335 4glp_A Monocyte differentiatio 99.9 2.3E-23 7.8E-28 216.4 14.3 229 105-361 64-308 (310)
336 2ca6_A RAN GTPase-activating p 99.9 1.4E-25 4.7E-30 241.1 -3.8 259 34-315 16-319 (386)
337 2xwt_C Thyrotropin receptor; s 99.9 3E-23 1E-27 206.8 13.3 196 132-357 33-236 (239)
338 4glp_A Monocyte differentiatio 99.9 4.3E-23 1.5E-27 214.3 13.8 222 4-240 66-308 (310)
339 2ca6_A RAN GTPase-activating p 99.9 3.9E-25 1.3E-29 237.6 -1.8 247 96-363 23-319 (386)
340 2ast_B S-phase kinase-associat 99.9 7.8E-24 2.7E-28 223.1 6.7 250 107-366 49-312 (336)
341 1h6u_A Internalin H; cell adhe 99.9 1.6E-22 5.4E-27 209.4 16.2 207 8-240 25-231 (308)
342 2xwt_C Thyrotropin receptor; s 99.9 1.5E-22 5.1E-27 201.8 14.9 211 9-237 18-237 (239)
343 1zar_A RIO2 kinase; serine kin 99.9 3.3E-23 1.1E-27 210.6 10.3 152 448-644 83-252 (282)
344 1h6u_A Internalin H; cell adhe 99.9 2.8E-22 9.7E-27 207.5 17.0 194 126-361 38-231 (308)
345 2ast_B S-phase kinase-associat 99.9 2.2E-23 7.6E-28 219.6 7.6 253 4-273 49-315 (336)
346 3m19_A Variable lymphocyte rec 99.9 8.7E-22 3E-26 197.7 18.1 181 155-363 15-195 (251)
347 3m19_A Variable lymphocyte rec 99.9 1.7E-21 5.8E-26 195.5 18.8 179 4-217 16-194 (251)
348 4ay9_X Follicle-stimulating ho 99.9 1.9E-21 6.5E-26 205.4 16.7 241 109-384 13-259 (350)
349 4ay9_X Follicle-stimulating ho 99.9 2.2E-21 7.6E-26 204.9 16.5 218 132-380 11-233 (350)
350 3cvr_A Invasion plasmid antige 99.8 1.4E-20 4.7E-25 208.8 15.7 190 28-252 60-256 (571)
351 2o6s_A Variable lymphocyte rec 99.8 3E-20 1E-24 180.7 15.5 181 5-227 10-190 (208)
352 2o6s_A Variable lymphocyte rec 99.8 4.2E-20 1.5E-24 179.6 15.4 180 133-347 10-189 (208)
353 3cvr_A Invasion plasmid antige 99.8 5.9E-20 2E-24 203.7 16.1 189 52-276 60-255 (571)
354 1h6t_A Internalin B; cell adhe 99.8 3.7E-20 1.3E-24 189.7 12.3 188 30-240 27-214 (291)
355 1m9s_A Internalin B; cell inva 99.8 4.2E-20 1.4E-24 207.4 13.6 169 26-215 42-210 (605)
356 1m9s_A Internalin B; cell inva 99.8 2.3E-20 8E-25 209.5 10.0 198 27-247 21-218 (605)
357 1h6t_A Internalin B; cell adhe 99.8 1.5E-19 5.1E-24 185.2 14.3 188 7-218 29-216 (291)
358 2v9t_B SLIT homolog 2 protein 99.8 3E-19 1E-23 174.8 12.1 152 157-336 14-165 (220)
359 2xot_A Amphoterin-induced prot 99.8 4.6E-19 1.6E-23 187.9 13.6 177 30-216 21-203 (361)
360 2xot_A Amphoterin-induced prot 99.8 5.7E-19 1.9E-23 187.1 12.9 179 108-312 21-202 (361)
361 2v9t_B SLIT homolog 2 protein 99.8 1.9E-18 6.6E-23 169.0 15.1 134 105-239 32-165 (220)
362 1zth_A RIO1 serine protein kin 99.8 2.1E-19 7.3E-24 180.5 8.2 136 457-615 49-219 (258)
363 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7.1E-23 168.8 15.0 153 5-192 14-167 (220)
364 2v70_A SLIT-2, SLIT homolog 2 99.8 2.7E-18 9.3E-23 168.0 15.8 134 107-241 34-168 (220)
365 1dce_A Protein (RAB geranylger 99.8 3.6E-21 1.2E-25 214.8 -6.5 190 100-338 344-548 (567)
366 3e6j_A Variable lymphocyte rec 99.8 4.2E-18 1.5E-22 167.8 15.9 105 132-239 21-125 (229)
367 1xeu_A Internalin C; cellular 99.8 4.1E-19 1.4E-23 179.0 7.6 168 28-217 20-187 (263)
368 4ezg_A Putative uncharacterize 99.8 1.5E-18 5.2E-23 166.8 10.7 154 46-214 39-193 (197)
369 1xeu_A Internalin C; cellular 99.8 1.5E-19 5.3E-24 182.1 3.7 178 40-241 10-187 (263)
370 1dce_A Protein (RAB geranylger 99.8 1.6E-20 5.5E-25 209.6 -4.1 204 72-330 346-567 (567)
371 3e6j_A Variable lymphocyte rec 99.8 8.5E-18 2.9E-22 165.6 15.8 154 77-241 21-174 (229)
372 4b8c_D Glucose-repressible alc 99.7 4.7E-19 1.6E-23 204.2 5.7 197 51-285 173-369 (727)
373 4ezg_A Putative uncharacterize 99.7 6.9E-18 2.4E-22 162.2 11.3 153 72-239 41-194 (197)
374 4b8c_D Glucose-repressible alc 99.7 1.6E-18 5.3E-23 199.8 6.0 182 169-361 215-405 (727)
375 3sb4_A Hypothetical leucine ri 99.7 3.5E-17 1.2E-21 171.2 12.6 243 1-253 48-324 (329)
376 3sb4_A Hypothetical leucine ri 99.7 1.4E-17 5E-22 174.0 8.9 282 50-353 24-327 (329)
377 1w8a_A SLIT protein; signaling 99.7 5.1E-17 1.7E-21 155.3 8.5 129 205-337 11-140 (192)
378 1w8a_A SLIT protein; signaling 99.7 5E-16 1.7E-20 148.3 14.0 91 125-216 50-140 (192)
379 4gyi_A RIO2 kinase; protein ki 99.7 7.7E-17 2.6E-21 167.2 8.7 136 455-614 95-264 (397)
380 2ell_A Acidic leucine-rich nuc 99.6 2.8E-16 9.5E-21 146.8 9.4 133 104-239 23-160 (168)
381 2ell_A Acidic leucine-rich nuc 99.6 7.9E-16 2.7E-20 143.7 11.4 132 51-191 24-160 (168)
382 2wfh_A SLIT homolog 2 protein 99.6 1.1E-15 3.8E-20 145.8 12.0 127 108-239 13-139 (193)
383 4fdw_A Leucine rich hypothetic 99.6 1.5E-14 5.2E-19 154.2 21.6 267 25-336 111-383 (401)
384 4fdw_A Leucine rich hypothetic 99.6 1.2E-14 4.2E-19 154.9 20.4 240 106-358 136-381 (401)
385 2wfh_A SLIT homolog 2 protein 99.6 1.1E-15 3.7E-20 145.9 10.7 93 270-362 49-141 (193)
386 2o6r_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 140.5 12.4 131 108-242 10-140 (177)
387 2je0_A Acidic leucine-rich nuc 99.6 5.5E-16 1.9E-20 141.5 6.5 127 105-234 17-148 (149)
388 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.7E-20 138.9 8.7 127 51-186 17-148 (149)
389 2o6r_A Variable lymphocyte rec 99.6 1E-14 3.6E-19 137.3 11.6 133 204-364 9-141 (177)
390 4fs7_A Uncharacterized protein 99.6 9E-14 3.1E-18 149.1 19.9 319 13-357 58-376 (394)
391 4fs7_A Uncharacterized protein 99.5 1.4E-13 4.9E-18 147.4 19.6 318 38-380 58-376 (394)
392 1a9n_A U2A', U2A'; complex (nu 99.5 7.4E-15 2.5E-19 138.1 7.9 133 101-239 15-153 (176)
393 1a9n_A U2A', U2A'; complex (nu 99.5 2.8E-14 9.7E-19 134.1 9.6 132 47-191 15-153 (176)
394 1ds9_A Outer arm dynein; leuci 99.5 2.7E-16 9.1E-21 151.2 -5.3 109 101-215 66-185 (198)
395 1ds9_A Outer arm dynein; leuci 99.5 4E-16 1.4E-20 150.0 -4.6 152 26-191 17-185 (198)
396 3g39_A Variable lymphocyte rec 99.4 3.3E-13 1.1E-17 125.7 11.3 105 132-239 11-115 (170)
397 2r9u_A Variable lymphocyte rec 99.4 5.3E-13 1.8E-17 124.8 11.4 104 108-215 15-118 (174)
398 3g39_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 124.7 11.1 107 107-217 11-117 (170)
399 2r9u_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 123.5 10.9 106 132-240 14-119 (174)
400 4gt6_A Cell surface protein; l 99.4 4E-11 1.4E-15 128.4 23.0 318 17-357 53-388 (394)
401 3un9_A NLR family member X1; l 99.3 1.8E-14 6.1E-19 152.1 -5.1 109 106-215 127-252 (372)
402 3un9_A NLR family member X1; l 99.3 9E-14 3.1E-18 146.7 -3.0 164 75-241 72-254 (372)
403 3tm0_A Aminoglycoside 3'-phosp 99.3 6.7E-12 2.3E-16 126.4 10.6 147 450-613 9-212 (263)
404 4gt6_A Cell surface protein; l 99.3 1.3E-10 4.5E-15 124.3 20.7 311 3-336 65-391 (394)
405 2ifg_A High affinity nerve gro 99.2 9.9E-12 3.4E-16 130.8 8.4 105 257-364 14-120 (347)
406 2ifg_A High affinity nerve gro 99.2 2.7E-11 9.3E-16 127.4 10.8 103 134-239 12-116 (347)
407 1nd4_A Aminoglycoside 3'-phosp 99.1 9.1E-11 3.1E-15 118.0 8.6 138 454-613 19-213 (264)
408 4h09_A Hypothetical leucine ri 99.0 1.7E-08 5.7E-13 107.4 22.6 301 25-347 44-356 (379)
409 4h09_A Hypothetical leucine ri 99.0 2.1E-08 7.3E-13 106.5 22.1 296 45-362 40-347 (379)
410 2ra8_A Uncharacterized protein 99.0 2E-10 6.8E-15 119.9 3.9 177 25-213 137-341 (362)
411 2ra8_A Uncharacterized protein 99.0 1.1E-10 3.9E-15 121.7 1.9 63 177-239 251-320 (362)
412 3dxp_A Putative acyl-COA dehyd 98.9 2.2E-09 7.7E-14 113.2 10.4 145 459-614 42-248 (359)
413 3sg8_A APH(2'')-ID; antibiotic 98.9 5.4E-10 1.8E-14 114.9 2.2 194 460-671 25-287 (304)
414 1io0_A Tropomodulin; LRR prote 98.6 3.9E-09 1.3E-13 99.3 -0.7 60 132-191 95-164 (185)
415 3r70_A Aminoglycoside phosphot 98.6 1.6E-07 5.4E-12 97.1 11.3 136 456-614 38-237 (320)
416 1io0_A Tropomodulin; LRR prote 98.6 7.1E-09 2.4E-13 97.6 -0.1 66 150-215 89-164 (185)
417 3d1u_A Putative fructosamine-3 98.5 6.7E-07 2.3E-11 90.3 12.1 76 459-543 19-97 (288)
418 3tdw_A Gentamicin resistance p 98.4 1.6E-06 5.6E-11 88.7 11.4 136 460-613 24-223 (306)
419 3rw6_A Nuclear RNA export fact 98.3 1.3E-07 4.3E-12 93.4 2.1 80 272-353 167-257 (267)
420 3rw6_A Nuclear RNA export fact 98.3 3.4E-08 1.2E-12 97.4 -2.5 41 48-88 167-209 (267)
421 4gkh_A Aminoglycoside 3'-phosp 98.2 2.5E-06 8.5E-11 85.8 9.6 134 462-613 31-222 (272)
422 3ovc_A Hygromycin-B 4-O-kinase 98.2 4.1E-06 1.4E-10 87.7 10.3 78 457-544 43-122 (362)
423 3ats_A Putative uncharacterize 98.2 4.8E-06 1.6E-10 87.4 10.6 84 460-545 25-122 (357)
424 3e4g_A ATP synthase subunit S, 98.0 9.5E-07 3.2E-11 80.6 1.0 81 132-212 63-149 (176)
425 2olc_A MTR kinase, methylthior 97.9 5E-05 1.7E-09 80.9 12.6 75 460-541 35-120 (397)
426 3e4g_A ATP synthase subunit S, 97.9 2.4E-06 8.2E-11 77.9 2.0 34 132-165 116-150 (176)
427 1pgv_A TMD-1, tropomodulin TMD 97.9 1.2E-06 4.2E-11 81.4 -0.2 122 44-167 34-170 (197)
428 3f7w_A Putative fructosamine-3 97.9 5E-05 1.7E-09 76.8 11.5 79 456-543 16-97 (288)
429 1pgv_A TMD-1, tropomodulin TMD 97.9 1.6E-06 5.6E-11 80.6 0.1 120 69-191 35-170 (197)
430 2q83_A YTAA protein; 2635576, 97.7 7.7E-05 2.6E-09 77.6 10.0 148 461-613 38-251 (346)
431 3dxq_A Choline/ethanolamine ki 97.4 0.00044 1.5E-08 70.3 9.8 74 457-543 20-95 (301)
432 3jr1_A Putative fructosamine-3 97.4 0.00067 2.3E-08 68.8 10.8 141 460-610 41-232 (312)
433 2pyw_A Uncharacterized protein 97.3 0.0006 2E-08 73.0 10.0 77 584-668 232-313 (420)
434 3csv_A Aminoglycoside phosphot 97.3 0.0014 4.6E-08 67.8 12.1 144 461-614 24-217 (333)
435 1zyl_A Hypothetical protein YI 97.3 0.0018 6.2E-08 66.6 12.8 167 442-613 8-222 (328)
436 2ppq_A HSK, HK, homoserine kin 97.2 0.0024 8.3E-08 65.4 12.2 167 444-613 6-216 (322)
437 2qg7_A Ethanolamine kinase PV0 97.1 0.0015 5.2E-08 70.0 10.8 74 460-543 113-188 (458)
438 1nw1_A Choline kinase (49.2 KD 97.1 0.00098 3.4E-08 71.2 8.5 73 460-543 78-159 (429)
439 3feg_A Choline/ethanolamine ki 97.0 0.0017 5.7E-08 67.8 9.3 142 461-613 56-253 (379)
440 3c5i_A Choline kinase; choline 96.8 0.0014 4.7E-08 68.8 6.6 73 461-543 39-121 (369)
441 3i1a_A Spectinomycin phosphotr 96.7 0.0061 2.1E-07 62.9 10.5 31 584-614 206-236 (339)
442 3rfe_A Platelet glycoprotein I 96.7 0.0023 7.8E-08 55.4 5.9 55 6-63 12-67 (130)
443 2yle_A Protein spire homolog 1 96.5 0.01 3.5E-07 55.3 9.4 102 542-670 34-135 (229)
444 3rfe_A Platelet glycoprotein I 96.5 0.0036 1.2E-07 54.1 6.1 35 180-214 33-67 (130)
445 3f2s_A CK, chetk-alpha, cholin 96.2 0.012 4.2E-07 61.5 9.2 143 461-613 58-279 (401)
446 3mes_A Choline kinase; malaria 95.6 0.031 1.1E-06 59.1 9.2 144 460-614 75-291 (424)
447 3g15_A CK, chetk-alpha, cholin 93.9 0.13 4.4E-06 54.2 8.5 29 585-613 245-279 (401)
448 2ks1_B Epidermal growth factor 93.0 0.18 6E-06 33.3 4.7 17 413-429 25-41 (44)
449 2jwa_A Receptor tyrosine-prote 89.2 0.55 1.9E-05 30.8 4.1 8 420-427 32-39 (44)
450 4ann_A ESSB; membrane protein, 89.1 0.72 2.5E-05 42.9 6.6 87 559-678 78-164 (215)
451 2l2t_A Receptor tyrosine-prote 86.8 0.92 3.1E-05 29.8 4.1 16 414-429 25-40 (44)
452 4ano_A ESSB; membrane protein, 80.1 3.5 0.00012 38.5 6.8 82 559-673 82-164 (219)
453 3cxl_A N-chimerin; SH2, RHO-GA 71.6 0.49 1.7E-05 50.6 -1.7 61 458-521 145-214 (463)
454 2lz0_A Uncharacterized protein 60.6 16 0.00055 29.1 5.7 44 143-187 9-52 (100)
455 2lx0_A Membrane fusion protein 54.6 20 0.0007 20.3 3.6 25 401-425 5-29 (32)
456 2lz0_A Uncharacterized protein 50.8 19 0.00064 28.8 4.5 46 165-211 7-52 (100)
457 1afo_A Glycophorin A; integral 45.0 28 0.00096 21.8 3.5 28 400-427 11-38 (40)
458 1zza_A Stannin, AG8_1; helix, 41.9 41 0.0014 24.3 4.5 23 408-430 23-45 (90)
459 1cja_A Protein (actin-fragmin 26.8 73 0.0025 31.7 5.2 141 460-614 74-237 (342)
460 2l8s_A Integrin alpha-1; trans 25.4 1.1E+02 0.0037 21.1 4.2 8 415-422 26-33 (54)
461 2knc_A Integrin alpha-IIB; tra 20.9 85 0.0029 21.6 3.0 8 415-422 29-36 (54)
No 1
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=2.5e-53 Score=433.79 Aligned_cols=264 Identities=29% Similarity=0.423 Sum_probs=208.3
Q ss_pred cCCCCCCccccccceEEEEEEeC------CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR------EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
++|.+.+.||+|+||.||+|++. +++.||||+++.......++|.+|++++++++|||||+++|+|. ++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~-----~~ 87 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCV-----EG 87 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----SS
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEe-----eC
Confidence 46788899999999999999864 37789999997666666788999999999999999999999975 34
Q ss_pred eeeEEEEeecCCCChhhhhcccCC-------CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERK-------NEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED 601 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~-------~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~ 601 (767)
+.+++|||||++|+|.++++..+. ......++|.++..|+.|+++||+|||++ +||||||||+|||++++
T Consensus 88 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~ 164 (299)
T 4asz_A 88 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGEN 164 (299)
T ss_dssp SSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGG
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCC
Confidence 567999999999999999976431 12234699999999999999999999999 99999999999999999
Q ss_pred CceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcc
Q 004218 602 MTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVS 680 (767)
Q Consensus 602 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~ 680 (767)
+.+||+|||+|+........ .......||+.|||||++.+..++.++|||||||++|||+| |+.||...... .
T Consensus 165 ~~~Ki~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~--~ 238 (299)
T 4asz_A 165 LLVKIGDFGMSRDVYSTDYY----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN--E 238 (299)
T ss_dssp GCEEECCCSCHHHHTGGGCE----EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--H
T ss_pred CcEEECCcccceecCCCCce----eecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--H
Confidence 99999999999876443211 11234568999999999999999999999999999999999 89999764321 2
Q ss_pred hhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 681 LVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
+...+........+..+++.+ .+++.+||+.||++|||++|+.+.|+++.+.
T Consensus 239 ~~~~i~~~~~~~~p~~~~~~~----------------------~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 239 VIECITQGRVLQRPRTCPQEV----------------------YELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHHHHHTCCCCCCTTCCHHH----------------------HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCccchHHH----------------------HHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 222222211111122222222 2267789999999999999999999987664
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.3e-52 Score=434.68 Aligned_cols=263 Identities=26% Similarity=0.402 Sum_probs=202.7
Q ss_pred cCCCCCCccccccceEEEEEEeC------CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR------EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
.+|.+.++||+|+||.||+|+++ +++.||||+++.......++|.+|++++++++|||||+++++|. +.
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~-----~~ 115 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCT-----EG 115 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----SS
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----EC
Confidence 45677789999999999999864 37889999997666666788999999999999999999999975 34
Q ss_pred eeeEEEEeecCCCChhhhhcccCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeC
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKN---------EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLD 599 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~---------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~ 599 (767)
..+++|||||++|+|.++++..... ....+++|.++..|+.|+++||+|||++ +||||||||+|||++
T Consensus 116 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~ 192 (329)
T 4aoj_A 116 RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVG 192 (329)
T ss_dssp SSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEE
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEEC
Confidence 5679999999999999999865432 1234699999999999999999999999 999999999999999
Q ss_pred CCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCC
Q 004218 600 EDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGE 678 (767)
Q Consensus 600 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~ 678 (767)
+++.+||+|||+|+........ .......||+.|||||++.+..++.++|||||||++|||+| |+.||.....
T Consensus 193 ~~~~~Ki~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~-- 266 (329)
T 4aoj_A 193 QGLVVKIGDFGMSRDIYSTDYY----RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN-- 266 (329)
T ss_dssp TTTEEEECCCC--------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH--
T ss_pred CCCcEEEcccccceeccCCCcc----eecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH--
Confidence 9999999999999866433211 11234568999999999999999999999999999999999 8999975422
Q ss_pred cchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHH
Q 004218 679 VSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQK 753 (767)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 753 (767)
......+....+...+..+++.+ .+++.+||+.||++|||++||+++|+.+.+
T Consensus 267 ~~~~~~i~~g~~~~~p~~~~~~~----------------------~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 267 TEAIDCITQGRELERPRACPPEV----------------------YAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp HHHHHHHHHTCCCCCCTTCCHHH----------------------HHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcccccHHH----------------------HHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence 12222222222222222222222 226778999999999999999999998865
No 3
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.7e-52 Score=432.28 Aligned_cols=248 Identities=25% Similarity=0.386 Sum_probs=204.1
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEE
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLAL 533 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 533 (767)
..|++.+.||+|+||.||+|+++ +|+.||||+++.......+.+.+|+++|++++|||||++++++ .+++.+|+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~-----~~~~~~~i 148 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY-----LVGDELWV 148 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEE-----EETTEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEE-----EECCEEEE
Confidence 46999999999999999999976 5999999999877666778899999999999999999999995 45567899
Q ss_pred EEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 534 VYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 534 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
|||||+||+|.+++...+ +++.++..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+
T Consensus 149 vmEy~~gg~L~~~l~~~~-------l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~ 218 (346)
T 4fih_A 149 VMEFLEGGALTDIVTHTR-------MNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCA 218 (346)
T ss_dssp EECCCTTEEHHHHHHHSC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred EEeCCCCCcHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCce
Confidence 999999999999997533 99999999999999999999999 99999999999999999999999999998
Q ss_pred hhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcccc-
Q 004218 614 SLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPKN- 692 (767)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~- 692 (767)
.+.... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+....+..
T Consensus 219 ~~~~~~------~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~~~~~ 290 (346)
T 4fih_A 219 QVSKEV------PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPPRL 290 (346)
T ss_dssp ECCSSS------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSSCCCC
T ss_pred ecCCCC------CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCCCC
Confidence 654321 123456799999999999999999999999999999999999999965321 11222222222111
Q ss_pred -hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 693 -AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 693 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
....+++. +++++.+||+.||++|||++|++++
T Consensus 291 ~~~~~~s~~----------------------~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 291 KNLHKVSPS----------------------LKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp SCGGGSCHH----------------------HHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CccccCCHH----------------------HHHHHHHHcCCChhHCcCHHHHhcC
Confidence 11111221 2236678999999999999999875
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-52 Score=425.92 Aligned_cols=259 Identities=29% Similarity=0.457 Sum_probs=199.0
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.+++++.+.||+|+||+||+|++++ .||||+++... ....+.|.+|++++++++|||||+++++|.. +.+
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~------~~~ 106 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK------DNL 106 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------SSC
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC------CeE
Confidence 3577888999999999999998763 59999986432 3345789999999999999999999998742 246
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++|||||++|+|.+++.... ..+++.++..|+.|||+||+|||++ +||||||||+|||+++++.+||+|||+
T Consensus 107 ~iVmEy~~gGsL~~~l~~~~-----~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGl 178 (307)
T 3omv_A 107 AIVTQWCEGSSLYKHLHVQE-----TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGL 178 (307)
T ss_dssp EEEEECCSSCBHHHHHHTSC-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSS
T ss_pred EEEEEcCCCCCHHHHHhhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccC
Confidence 89999999999999997543 2499999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCC---CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG---EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
|+........ .......||+.|||||++.+ .+++.++|||||||++|||+||+.||....... .+...+...
T Consensus 179 a~~~~~~~~~----~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~-~~~~~~~~~ 253 (307)
T 3omv_A 179 ATVKSRWSGS----QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD-QIIFMVGRG 253 (307)
T ss_dssp CBC----------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-HHHHHHHTT
T ss_pred ceecccCCcc----eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHH-HHHHHHhcC
Confidence 9865432211 12245679999999999854 468999999999999999999999996532211 112222221
Q ss_pred ccc-c---hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 689 FPK-N---AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 689 ~~~-~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
... . ....+++. +.+++.+||+.||++|||++|++++|+.++..+
T Consensus 254 ~~~p~~~~~~~~~~~~----------------------l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 254 YASPDLSKLYKNCPKA----------------------MKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp CCCCCSTTSCTTSCHH----------------------HHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccccccchHH----------------------HHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence 111 1 11111111 223677899999999999999999999887654
No 5
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=3.9e-52 Score=428.39 Aligned_cols=265 Identities=24% Similarity=0.291 Sum_probs=205.5
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.+.|++.++||+|+||.||+|+++ +|+.||||+++.+. ...+|+.+++.++|||||++++++ .+++.+|
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~-----~~~~~~~ 126 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAV-----REGPWVN 126 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEE-----EETTEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH-----hHHHHHHHHHhCCCCCCCcEEEEE-----EECCEEE
Confidence 356778889999999999999976 49999999997532 234799999999999999999995 4556789
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC-ceEEccccc
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM-TAKVGDFGL 611 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~-~~kl~Dfg~ 611 (767)
+|||||+||+|.+++...+ .+++.++..++.||+.||+|||++ +||||||||+|||++.+| ++||+|||+
T Consensus 127 ivmEy~~gg~L~~~l~~~~------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGl 197 (336)
T 4g3f_A 127 IFMELLEGGSLGQLIKQMG------CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGH 197 (336)
T ss_dssp EEECCCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTT
T ss_pred EEEeccCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCC
Confidence 9999999999999997654 399999999999999999999999 999999999999999887 699999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhccc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPK 691 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 691 (767)
|+.+....... ........+||+.|||||++.+..++.++||||+||++|||+||+.||........ .........+.
T Consensus 198 a~~~~~~~~~~-~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~~~~~~ 275 (336)
T 4g3f_A 198 ALCLQPDGLGK-SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-CLKIASEPPPI 275 (336)
T ss_dssp CEEC-------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-HHHHHHSCCGG
T ss_pred CeEccCCCccc-ceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHHcCCCCc
Confidence 98764432111 11122346799999999999999999999999999999999999999976443322 11221111110
Q ss_pred -chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 004218 692 -NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLKRRQP 761 (767)
Q Consensus 692 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~~~~ 761 (767)
..+..+++. +.+++.+||+.||++|||+.|++++|..+.......+.|
T Consensus 276 ~~~~~~~s~~----------------------~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hP 324 (336)
T 4g3f_A 276 REIPPSCAPL----------------------TAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSP 324 (336)
T ss_dssp GGSCTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSC
T ss_pred hhcCccCCHH----------------------HHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccCC
Confidence 111112222 223667899999999999999999999888766544433
No 6
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=6.9e-52 Score=419.65 Aligned_cols=248 Identities=27% Similarity=0.395 Sum_probs=195.0
Q ss_pred CCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEEE
Q 004218 458 SHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLALV 534 (767)
Q Consensus 458 ~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv 534 (767)
++.+.||+|+||.||+|.+. +++.||+|++.... ....+.|.+|++++++++|||||++++++... ......+|+|
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec-cCCCcEEEEE
Confidence 56678999999999999976 48899999986442 23456789999999999999999999987532 2335678999
Q ss_pred EeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEeecCCCCCeeeCC-CCceEEccccc
Q 004218 535 YEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVP--IVHCDLKPGNILLDE-DMTAKVGDFGL 611 (767)
Q Consensus 535 ~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~~-~~~~kl~Dfg~ 611 (767)
||||+||+|.+++.... .+++..+..|+.||+.||+|||++ + ||||||||+|||++. ++.+||+|||+
T Consensus 108 mEy~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl~DFGl 178 (290)
T 3fpq_A 108 TELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGL 178 (290)
T ss_dssp EECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEECCTTG
T ss_pred EeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEEEeCcC
Confidence 99999999999997654 399999999999999999999998 6 999999999999984 79999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh-hcc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES-NFP 690 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-~~~ 690 (767)
|+.... ......+||+.|||||++.+ .++.++|||||||++|||+||+.||....... .+...+.. ..|
T Consensus 179 a~~~~~--------~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~-~~~~~i~~~~~~ 248 (290)
T 3fpq_A 179 ATLKRA--------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAA-QIYRRVTSGVKP 248 (290)
T ss_dssp GGGCCT--------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH-HHHHHHTTTCCC
T ss_pred CEeCCC--------CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHH-HHHHHHHcCCCC
Confidence 975322 12245679999999999865 69999999999999999999999996532211 11122211 122
Q ss_pred cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 691 KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 691 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
........+. +++++.+||+.||++|||++|++++
T Consensus 249 ~~~~~~~~~~----------------------~~~li~~~L~~dP~~R~s~~e~l~H 283 (290)
T 3fpq_A 249 ASFDKVAIPE----------------------VKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp GGGGGCCCHH----------------------HHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred CCCCccCCHH----------------------HHHHHHHHccCChhHCcCHHHHhcC
Confidence 2222222222 2236778999999999999999874
No 7
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=4.3e-52 Score=426.57 Aligned_cols=260 Identities=22% Similarity=0.339 Sum_probs=203.7
Q ss_pred cCCCCCCccccccceEEEEEEeC------CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR------EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
..+++.+.||+|+||.||+|.+. +++.||||+++... ....++|.+|+.++++++|||||+++|+|..
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~----- 100 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK----- 100 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-----
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE-----
Confidence 34567789999999999999863 36789999996443 3345789999999999999999999999753
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCee
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKN----------EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNIL 597 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl 597 (767)
++.+++|||||++|+|.+++...... .....+++.++..|+.|||+||+|||++ +||||||||+|||
T Consensus 101 ~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NIL 177 (308)
T 4gt4_A 101 DQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVL 177 (308)
T ss_dssp SSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEE
T ss_pred CCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceE
Confidence 34569999999999999999754321 1124599999999999999999999999 9999999999999
Q ss_pred eCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCccc
Q 004218 598 LDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFA 676 (767)
Q Consensus 598 ~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~ 676 (767)
+++++.+||+|||+|+........ .......||+.|||||++.++.++.++|||||||++|||+| |+.||.....
T Consensus 178 l~~~~~~Ki~DFGlar~~~~~~~~----~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~ 253 (308)
T 4gt4_A 178 VYDKLNVKISDLGLFREVYAADYY----KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN 253 (308)
T ss_dssp ECGGGCEEECCSCCBCGGGGGGCB----CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH
T ss_pred ECCCCCEEECCcccceeccCCCce----eEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH
Confidence 999999999999999876543221 12234568999999999999999999999999999999998 8999966432
Q ss_pred CCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHH
Q 004218 677 GEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKN 750 (767)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~ 750 (767)
..+...+........++.+++. +.+++.+||+.||++|||++||+++|+.
T Consensus 254 --~~~~~~i~~~~~~~~p~~~~~~----------------------~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 254 --QDVVEMIRNRQVLPCPDDCPAW----------------------VYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp --HHHHHHHHTTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred --HHHHHHHHcCCCCCCcccchHH----------------------HHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 2222223222211122222222 1226778999999999999999999975
No 8
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=2.3e-52 Score=431.89 Aligned_cols=251 Identities=24% Similarity=0.342 Sum_probs=197.2
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
++|++.+.||+|+||.||+|++. +|+.||||++.... ....+.+.+|++++++++|||||++++++ .+++.+
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~-----~~~~~~ 98 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESF-----EENGSL 98 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----EETTEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEE-----EECCEE
Confidence 58999999999999999999975 59999999997543 23456789999999999999999999995 456678
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
|+|||||+||+|.+++...+ ...+++.+++.|+.||+.||+|||++ +||||||||+|||++.+|.+||+|||+
T Consensus 99 yiVmEy~~gg~L~~~i~~~~----~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGl 171 (350)
T 4b9d_A 99 YIVMDYCEGGDLFKRINAQK----GVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGI 171 (350)
T ss_dssp EEEEECCTTCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTE
T ss_pred EEEEeCCCCCcHHHHHHHcC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEccccc
Confidence 99999999999999997543 23479999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhccc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPK 691 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 691 (767)
|+...... ......+||+.|||||++.+..|+.++||||+||++|||+||+.||...... ..+.+.....++.
T Consensus 172 a~~~~~~~------~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~-~~~~~i~~~~~~~ 244 (350)
T 4b9d_A 172 ARVLNSTV------ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK-NLVLKIISGSFPP 244 (350)
T ss_dssp ESCCCHHH------HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHTCCCC
T ss_pred ceeecCCc------ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH-HHHHHHHcCCCCC
Confidence 98654321 1224467999999999999999999999999999999999999999653221 1112222222221
Q ss_pred chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 692 NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 692 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
. ...+++. +++++.+||+.||++|||++|++++
T Consensus 245 ~-~~~~s~~----------------------~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 245 V-SLHYSYD----------------------LRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp C-CTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred C-CccCCHH----------------------HHHHHHHHccCChhHCcCHHHHhcC
Confidence 1 1112221 2236778999999999999999874
No 9
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.7e-51 Score=433.85 Aligned_cols=248 Identities=25% Similarity=0.386 Sum_probs=204.2
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEE
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLAL 533 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 533 (767)
..|++.+.||+|+||.||+|+++ +|+.||||++........+.+.+|+++|+.++|||||++++++. +++.+|+
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~~~i 225 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDELWV 225 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEE-----ECCEEEE
Confidence 56999999999999999999976 59999999998776667788999999999999999999999954 4567899
Q ss_pred EEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 534 VYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 534 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
|||||+||+|.+++...+ +++.++..|+.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+
T Consensus 226 VmEy~~gG~L~~~i~~~~-------l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~ 295 (423)
T 4fie_A 226 VMEFLEGGALTDIVTHTR-------MNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCA 295 (423)
T ss_dssp EEECCTTEEHHHHHHHSC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCE
T ss_pred EEeCCCCCcHHHHHhccC-------CCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccce
Confidence 999999999999997543 99999999999999999999999 99999999999999999999999999998
Q ss_pred hhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcccc-
Q 004218 614 SLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPKN- 692 (767)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~- 692 (767)
.+.... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+....+..
T Consensus 296 ~~~~~~------~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~~~~~ 367 (423)
T 4fie_A 296 QVSKEV------PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPPRL 367 (423)
T ss_dssp ECCSSC------CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSCCCCC
T ss_pred ECCCCC------ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCCCC
Confidence 654321 123456799999999999999999999999999999999999999965321 11222222222111
Q ss_pred -hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 693 -AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 693 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
....+++. +++++.+||+.||++|||++|++++
T Consensus 368 ~~~~~~s~~----------------------~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 368 KNLHKVSPS----------------------LKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp SCTTSSCHH----------------------HHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred cccccCCHH----------------------HHHHHHHHcCCChhHCcCHHHHhcC
Confidence 11111211 2236678999999999999999875
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.4e-51 Score=418.75 Aligned_cols=249 Identities=23% Similarity=0.348 Sum_probs=201.4
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
++|++.+.||+|+||.||+|++. +|+.||||++... .....+.+.+|++++++++|||||++++++ .+++.
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----~~~~~ 106 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTF-----QDDEK 106 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----ECSSE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----EeCCE
Confidence 46999999999999999999975 5999999999643 334567899999999999999999999994 45677
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
+|+|||||+||+|.+++...+. +++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||
T Consensus 107 ~yivmEy~~gG~L~~~i~~~~~------l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFG 177 (311)
T 4aw0_A 107 LYFGLSYAKNGELLKYIRKIGS------FDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 177 (311)
T ss_dssp EEEEECCCTTEEHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCT
T ss_pred EEEEEecCCCCCHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcC
Confidence 8999999999999999976543 99999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFP 690 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 690 (767)
+|+.+..... .......+||+.|||||++.+..|+.++||||+||++|||++|+.||....... .+.......+
T Consensus 178 la~~~~~~~~----~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~-~~~~i~~~~~- 251 (311)
T 4aw0_A 178 TAKVLSPESK----QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL-IFAKIIKLEY- 251 (311)
T ss_dssp TCEECCTTTT----CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCC-
T ss_pred CceecCCCCC----cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHcCCC-
Confidence 9987643211 122345689999999999999999999999999999999999999996532111 1111111111
Q ss_pred cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 004218 691 KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALR 746 (767)
Q Consensus 691 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~ 746 (767)
..++.+++. +++++.+||+.||++|||++|++.
T Consensus 252 -~~p~~~s~~----------------------~~dli~~lL~~dp~~R~t~~e~~~ 284 (311)
T 4aw0_A 252 -DFPEKFFPK----------------------ARDLVEKLLVLDATKRLGCEEMEG 284 (311)
T ss_dssp -CCCTTCCHH----------------------HHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred -CCCcccCHH----------------------HHHHHHHHccCCHhHCcChHHHcC
Confidence 111112211 223777899999999999999754
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-49 Score=465.78 Aligned_cols=391 Identities=35% Similarity=0.560 Sum_probs=340.2
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCcc-CCCCCCCcE
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPG-LGNLPFLKM 79 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~ 79 (767)
+++|++|+|++|+++|.+|..++..+++|++|+|++|.+.+.+|..|+++++|++|+|++|.+++.+|.. +..+++|++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 4678899999999988888888765688999999999998888888889999999999999888777765 888888888
Q ss_pred EeecCccccCCCCCCc-------------------cccccccC--CCCCCEEECcCCcceeecCchhhhhccccCeEEcc
Q 004218 80 YNIGFNKIVGSGDEGL-------------------SFITSLTN--STRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMG 138 (767)
Q Consensus 80 L~l~~n~l~~~~~~~~-------------------~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~ 138 (767)
|++++|++.+.....+ ..+..+.. +++|++|++++|++++.+|..++++++ |++|+++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls 426 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLS 426 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT-CCEEECC
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC-CCEEECc
Confidence 8888888763221111 11222222 567888888888888888888988888 9999999
Q ss_pred CCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCC
Q 004218 139 GNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEI 218 (767)
Q Consensus 139 ~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 218 (767)
+|++++.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.+|..+.++++|++|+|++|++++..
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 99998888999999999999999999999888889999999999999999999888999999999999999999999889
Q ss_pred cccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhh---------------------------
Q 004218 219 PTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEI--------------------------- 271 (767)
Q Consensus 219 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~--------------------------- 271 (767)
|.+|+.+++|+.|+|++|++.+.+|..+..+++| +.+++++|.+++.+|..+
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 9999999999999999999998999999999988 445899998887666543
Q ss_pred -------------------------------------------cCCCceeEEEccCCCCCCCCCcccccCcccceeeccC
Q 004218 272 -------------------------------------------GMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMAN 308 (767)
Q Consensus 272 -------------------------------------------~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~ 308 (767)
+.+++|+.|||++|++++.+|..++.+++|+.|+|++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 3457899999999999999999999999999999999
Q ss_pred ccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCCccccccccccccCCcCccccC-
Q 004218 309 NKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPKLCLHL- 387 (767)
Q Consensus 309 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~~c~~~- 387 (767)
|++++.+|..+..+++|+.|||++|+++|.+|..+..+++|+.|++++|+++|.+|..+++.++....+.|||+.|+..
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l 745 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred -CCCCCC
Q 004218 388 -GCENSS 393 (767)
Q Consensus 388 -~c~~~~ 393 (767)
.|..+.
T Consensus 746 ~~C~~~~ 752 (768)
T 3rgz_A 746 PRCDPSN 752 (768)
T ss_dssp CCCCSCC
T ss_pred cCCCCCc
Confidence 676443
No 12
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.7e-50 Score=405.56 Aligned_cols=246 Identities=28% Similarity=0.389 Sum_probs=185.7
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
++|++.+.||+|+||.||+|++. +|+.||||+++.. .....+.+.+|++++++++|||||++++++ .+.+.
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~-----~~~~~ 87 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVI-----KSKDE 87 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSSE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EECCE
Confidence 68999999999999999999975 5999999999654 233456789999999999999999999995 45667
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
+|+||||+ +|+|.+++.... .+++.++..++.||+.||+|||++ +|+||||||+||++++++.+||+|||
T Consensus 88 ~~ivmEy~-~g~L~~~l~~~~------~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFG 157 (275)
T 3hyh_A 88 IIMVIEYA-GNELFDYIVQRD------KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFG 157 (275)
T ss_dssp EEEEEECC-CEEHHHHHHHSC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSS
T ss_pred EEEEEeCC-CCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecC
Confidence 89999999 679999997643 399999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
+|+...+.. .....+||+.|||||++.+..+ +.++||||+||++|||+||+.||..... ..+.+.+....
T Consensus 158 la~~~~~~~-------~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~--~~~~~~i~~~~ 228 (275)
T 3hyh_A 158 LSNIMTDGN-------FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI--PVLFKNISNGV 228 (275)
T ss_dssp CC----------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTC
T ss_pred CCeecCCCC-------ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCC
Confidence 998654321 1234679999999999998876 5899999999999999999999965321 11111111111
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
+ ..+..+++. +++++.+||+.||++|||++|++++
T Consensus 229 ~-~~p~~~s~~----------------------~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 229 Y-TLPKFLSPG----------------------AAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp C-CCCTTSCHH----------------------HHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred C-CCCCCCCHH----------------------HHHHHHHHccCChhHCcCHHHHHcC
Confidence 1 111112221 2236778999999999999999874
No 13
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=8e-51 Score=424.55 Aligned_cols=273 Identities=25% Similarity=0.369 Sum_probs=213.0
Q ss_pred HHHHHHhcCCCCCCccccccceEEEEEEeCC------CcEEEEEEeeccCC-cchhhHHHHHHHHhcCCC-CCceeEEee
Q 004218 448 DELRRATGNFSHENLIGSGSFGSVYKGYLRE------GISVAVKVLDIEST-GTWKSFFAECEALRNTRH-RNLVKLITS 519 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h-~niv~~~~~ 519 (767)
++.+...++|++.+.||+|+||.||+|.+.. ++.||||.+..... ...+.+.+|+++++++.| ||||+++|+
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~ 136 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 136 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEE
Confidence 3444556789999999999999999998642 36799999865433 345679999999999965 899999999
Q ss_pred eecCCcccceeeEEEEeecCCCChhhhhcccCCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEee
Q 004218 520 CSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKN----------EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHC 589 (767)
Q Consensus 520 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~ 589 (767)
|.. .+..+++|||||++|+|.++++..+.. .....+++.++..++.|||+||+|||++ +||||
T Consensus 137 ~~~----~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHR 209 (353)
T 4ase_A 137 CTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHR 209 (353)
T ss_dssp ECC----TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred EEe----cCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecC
Confidence 753 345579999999999999999764321 1134589999999999999999999999 99999
Q ss_pred cCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CC
Q 004218 590 DLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GM 668 (767)
Q Consensus 590 Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~ 668 (767)
||||+|||+++++.+||+|||+|+....... ........||+.|||||++.+..++.++|||||||++|||+| |+
T Consensus 210 DLK~~NILl~~~~~vKi~DFGlar~~~~~~~----~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~ 285 (353)
T 4ase_A 210 DLAARNILLSEKNVVKICDFGLARDIYKDPD----YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA 285 (353)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTT----SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred ccCccceeeCCCCCEEECcchhhhhcccCCC----ceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCC
Confidence 9999999999999999999999986543221 122345678999999999999999999999999999999998 89
Q ss_pred CCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 669 SPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 669 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
.||....... .+...+........++.+.+.+. +++.+||+.||++|||++|++++|
T Consensus 286 ~Pf~~~~~~~-~~~~~i~~g~~~~~p~~~~~~~~----------------------~li~~c~~~dP~~RPt~~eil~~L 342 (353)
T 4ase_A 286 SPYPGVKIDE-EFCRRLKEGTRMRAPDYTTPEMY----------------------QTMLDCWHGEPSQRPTFSELVEHL 342 (353)
T ss_dssp CSSTTCCCSH-HHHHHHHHTCCCCCCTTCCHHHH----------------------HHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred CCCCCCCHHH-HHHHHHHcCCCCCCCccCCHHHH----------------------HHHHHHcCcChhHCcCHHHHHHHH
Confidence 9997643222 22233332222222232333222 266689999999999999999999
Q ss_pred HHHHHH
Q 004218 749 KNAQKI 754 (767)
Q Consensus 749 ~~~~~~ 754 (767)
+.+.+.
T Consensus 343 ~~llq~ 348 (353)
T 4ase_A 343 GNLLQA 348 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 14
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=2.4e-50 Score=415.34 Aligned_cols=277 Identities=23% Similarity=0.304 Sum_probs=195.6
Q ss_pred cCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHH--HHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFF--AECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~--~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
++|.+.+.||+|+||.||+|+++ |+.||||+++... .+.+. .|+..+.+++|||||+++++|...+ .....++
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~-~~~~~~~ 77 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLW 77 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccc---hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecC-CCceEEE
Confidence 45778899999999999999985 8999999986432 23333 4555566789999999999986422 1234679
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEeecCCCCCeeeCCCCceEEc
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDC-----EVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
+|||||++|+|.++++... +++.++.+++.|+++||+|||+++ .++||||||||+|||++.++.+||+
T Consensus 78 lV~Ey~~~gsL~~~l~~~~-------l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~ 150 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNRYT-------VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA 150 (303)
T ss_dssp EEEECCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred EEecCCCCCcHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEE
Confidence 9999999999999997643 899999999999999999999752 3489999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCC------CCCCcccchhhhHHHHHHHhCCCCCCCcccCCcch
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE------KPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSL 681 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~ 681 (767)
|||+|+........ .........||+.|||||++.+. .++.++|||||||++|||+||++||..........
T Consensus 151 DFGla~~~~~~~~~--~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~ 228 (303)
T 3hmm_A 151 DLGLAVRHDSATDT--IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY 228 (303)
T ss_dssp CCTTCEEEETTTTE--ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTT
T ss_pred eCCCCccccCCCCc--eeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccc
Confidence 99999865433211 11122345799999999998764 35779999999999999999998875432221111
Q ss_pred hhHhhhhcccchhhhccHHHHHhhhc-----chhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHH
Q 004218 682 VKWVESNFPKNAQQVLDRELRQLMMS-----SESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQK 753 (767)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 753 (767)
..... . ......+...+.. .........++... +.+++.+||+.||++||||.|+++.|+++.+
T Consensus 229 ~~~~~----~---~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~-l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 229 YDLVP----S---DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRV-MAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp TTTSC----S---SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHH-HHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hhccc----c---cchHHHHHHHHhcccCCCCCCccccchHHHHH-HHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence 10000 0 0000001111000 00000111111222 2337889999999999999999999998865
No 15
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=3.5e-50 Score=408.91 Aligned_cols=247 Identities=27% Similarity=0.331 Sum_probs=190.3
Q ss_pred cCCCCCCccccccceEEEEEEeC----CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR----EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
++|++.+.||+|+||.||+|+.. +++.||||+++... ......+.+|++++++++|||||++++++ .++
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----~~~ 98 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAF-----QTE 98 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEE-----EET
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EEC
Confidence 57999999999999999999863 37889999986432 23345688999999999999999999995 456
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
+.+|+|||||+||+|.+++...+ .+++.++..++.|++.||+|||++ +|+||||||+|||++.+|.+||+|
T Consensus 99 ~~~~ivmEy~~gg~L~~~l~~~~------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~D 169 (304)
T 3ubd_A 99 GKLYLILDFLRGGDLFTRLSKEV------MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTD 169 (304)
T ss_dssp TEEEEEECCCTTCEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEES
T ss_pred CEEEEEEEcCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecc
Confidence 67899999999999999997654 399999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||+|+...... ......+||+.|||||++.+..++.++||||+||++|||+||+.||...... .....+...
T Consensus 170 FGla~~~~~~~------~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~--~~~~~i~~~ 241 (304)
T 3ubd_A 170 FGLSKESIDHE------KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRK--ETMTMILKA 241 (304)
T ss_dssp SEEEEC-----------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHC
T ss_pred cccceeccCCC------ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHH--HHHHHHHcC
Confidence 99998653321 1223467999999999999999999999999999999999999999653221 111111111
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCH-----HHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDI-----REALR 746 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~-----~evl~ 746 (767)
.+ ..+..+++. +++++.+||+.||++|||+ +|+++
T Consensus 242 ~~-~~p~~~s~~----------------------~~~li~~~L~~dP~~R~ta~~~~~~eil~ 281 (304)
T 3ubd_A 242 KL-GMPQFLSPE----------------------AQSLLRMLFKRNPANRLGAGPDGVEEIKR 281 (304)
T ss_dssp CC-CCCTTSCHH----------------------HHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred CC-CCCCcCCHH----------------------HHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence 11 111222222 2236778999999999985 56665
No 16
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=2.1e-49 Score=405.83 Aligned_cols=261 Identities=23% Similarity=0.368 Sum_probs=187.2
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC-cchhhHHHHHHHHhcCCCCCceeEEeeeecCCc-------
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST-GTWKSFFAECEALRNTRHRNLVKLITSCSSLDF------- 525 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~------- 525 (767)
++|++.+.||+|+||.||+|+++ +|+.||||+++.... ...+.+.+|++++++++|||||++++++...+.
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 45899999999999999999976 589999999975543 345678999999999999999999998754321
Q ss_pred ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceE
Q 004218 526 KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAK 605 (767)
Q Consensus 526 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~k 605 (767)
....++|+|||||++|+|.+++...... ...++..++.|+.|+++||+|||++ +|+||||||+|||++.++.+|
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~---~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vK 158 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTI---EERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVK 158 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSG---GGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEE
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCC---ChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEE
Confidence 2344689999999999999999865431 2256777899999999999999999 999999999999999999999
Q ss_pred EccccchhhhhhhcCCCc------cccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc
Q 004218 606 VGDFGLARSLLERIGNQS------SISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV 679 (767)
Q Consensus 606 l~Dfg~a~~~~~~~~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~ 679 (767)
|+|||+|+.......... ........+||+.|||||++.+..|+.++||||+||++|||++ ||........
T Consensus 159 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~ 235 (299)
T 4g31_A 159 VGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVR 235 (299)
T ss_dssp ECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHH
T ss_pred EccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHH
Confidence 999999987754322111 1112234579999999999999999999999999999999996 7743211100
Q ss_pred chhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 680 SLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.+.......+|.. ..+..+. ..+++.+||+.||++|||+.|++++
T Consensus 236 ~~~~~~~~~~p~~-------------------~~~~~~~----~~~li~~~L~~dP~~Rps~~eil~h 280 (299)
T 4g31_A 236 TLTDVRNLKFPPL-------------------FTQKYPC----EYVMVQDMLSPSPMERPEAINIIEN 280 (299)
T ss_dssp HHHHHHTTCCCHH-------------------HHHHCHH----HHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHHHhcCCCCCC-------------------CcccCHH----HHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1111111111110 0011111 1237779999999999999999873
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-46 Score=439.91 Aligned_cols=372 Identities=36% Similarity=0.550 Sum_probs=272.9
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCC-CCCCEEEcccccCcccCCccCCCCCCCcE
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNL-TNIQIIRMAHNLLEGTVPPGLGNLPFLKM 79 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 79 (767)
+++|++|+|++|++++.+|.. .+++|++|++++|.+.+.+|..+..+ ++|++|+|++|.+++.+|..++.+++|++
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred CCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence 578999999999999888875 58999999999999999999988876 99999999999999999999999999999
Q ss_pred EeecCccccCCCCCCcccccc-ccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCccc---------------
Q 004218 80 YNIGFNKIVGSGDEGLSFITS-LTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFY--------------- 143 (767)
Q Consensus 80 L~l~~n~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~--------------- 143 (767)
|++++|++.+ .++.. +.++++|++|++++|++++.+|..+..+..+|++|++++|+++
T Consensus 323 L~L~~n~l~~------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 323 LALSSNNFSG------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp EECCSSEEEE------ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred EECCCCcccC------cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 9999999863 23333 7778888888888888888888888776522555555555554
Q ss_pred -----------ccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCC
Q 004218 144 -----------GKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGN 212 (767)
Q Consensus 144 -----------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 212 (767)
+.+|..+.++++|++|+|++|.+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|+|++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 455555566666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCC
Q 004218 213 ELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLP 292 (767)
Q Consensus 213 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 292 (767)
++++..|..+..+++|+.|+|++|++++.+|..+..+++| +.+++++|++++.+|..++.+++|+.|++++|.+++.+|
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL-AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC-CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 6666666666666666666666666666666666666666 333667776666666666667777777777766655444
Q ss_pred cc----------------------------------------------------------------------cccCcccc
Q 004218 293 NS----------------------------------------------------------------------FKNCKSLE 302 (767)
Q Consensus 293 ~~----------------------------------------------------------------------~~~l~~L~ 302 (767)
.. +..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 32 22345667
Q ss_pred eeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCC-ccccccccccccCCc
Q 004218 303 KLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPRE-GIFRHTSMVHLEGNP 381 (767)
Q Consensus 303 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~l~~Np 381 (767)
.|+|++|++++.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|.. ..+..+..+++.+|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 7777777777777777777777777777777777777777777777777777777777776655 445667777777776
Q ss_pred C
Q 004218 382 K 382 (767)
Q Consensus 382 ~ 382 (767)
.
T Consensus 716 l 716 (768)
T 3rgz_A 716 L 716 (768)
T ss_dssp E
T ss_pred c
Confidence 3
No 18
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-47 Score=406.01 Aligned_cols=280 Identities=21% Similarity=0.254 Sum_probs=201.7
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC--cchhhHHHHHHHHhcCCCCCceeEEeeeecCC-ccccee
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST--GTWKSFFAECEALRNTRHRNLVKLITSCSSLD-FKNMEF 530 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~~~~ 530 (767)
++|++.+.||+|+||.||+|+++ +|+.||||+++.... ...+.+.+|+++|+.++|||||++++++.... +.+...
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999975 599999999964422 33567889999999999999999999876432 445678
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
+|+|||||+ |+|.+++...+ .+++.++..+++||+.||+|||++ +||||||||+|||++.++.+||+|||
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~------~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFG 203 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQ------PLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFG 203 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEeCCC-CCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecc
Confidence 999999996 68999997644 399999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCC-CCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh--
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES-- 687 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-- 687 (767)
+|+.+...... ........+||+.|+|||++.+. .++.++||||+||++|||++|++||....... .+......
T Consensus 204 la~~~~~~~~~--~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~-~l~~I~~~~g 280 (398)
T 4b99_A 204 MARGLCTSPAE--HQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVH-QLQLIMMVLG 280 (398)
T ss_dssp TCBCC---------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHH-HHHHHHHHHC
T ss_pred eeeecccCccc--cccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHH-HHHHHHHhcC
Confidence 99866433211 11223456799999999998775 46999999999999999999999996542211 11111111
Q ss_pred hcccch-hhhccHHHHHhhhcc----hhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 688 NFPKNA-QQVLDRELRQLMMSS----ESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 688 ~~~~~~-~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..+... ...........+... +.........+...+.+++.+||..||++||||+|++++
T Consensus 281 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 345 (398)
T 4b99_A 281 TPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH 345 (398)
T ss_dssp CCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred CCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 111110 000000111111000 000001111111223347779999999999999999875
No 19
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=6.3e-47 Score=398.34 Aligned_cols=207 Identities=25% Similarity=0.332 Sum_probs=170.3
Q ss_pred HHHHhcCCCCCCccccccceEEEEEEeC----CCcEEEEEEeeccCCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCC
Q 004218 450 LRRATGNFSHENLIGSGSFGSVYKGYLR----EGISVAVKVLDIESTGTWKSFFAECEALRNT-RHRNLVKLITSCSSLD 524 (767)
Q Consensus 450 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~ 524 (767)
+....++|++.+.||+|+||.||+|+.+ +++.||+|.+... ....++.+|+++++.+ +||||+++++++
T Consensus 16 ~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~---- 89 (361)
T 4f9c_A 16 VPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCF---- 89 (361)
T ss_dssp SGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEE----
T ss_pred cCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEE----
Confidence 3445688999999999999999999863 4678999988543 3446788999999998 699999999984
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC-Cc
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED-MT 603 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~-~~ 603 (767)
.+.+++|+||||+++|+|.+++.. +++.++..++.|++.||+|||++ ||+||||||+|||++.+ +.
T Consensus 90 -~~~~~~~lvmE~~~g~~L~~~~~~---------l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~ 156 (361)
T 4f9c_A 90 -RKNDHVVIAMPYLEHESFLDILNS---------LSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKK 156 (361)
T ss_dssp -EETTEEEEEEECCCCCCHHHHHTT---------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTE
T ss_pred -EECCEEEEEEeCCCcccHHHHHcC---------CCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCe
Confidence 456778999999999999999842 89999999999999999999999 99999999999999876 89
Q ss_pred eEEccccchhhhhhhcCCC----------------------ccccccccccCCCCccCccccCCC-CCCCcccchhhhHH
Q 004218 604 AKVGDFGLARSLLERIGNQ----------------------SSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVM 660 (767)
Q Consensus 604 ~kl~Dfg~a~~~~~~~~~~----------------------~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~i 660 (767)
+||+|||+|+...+..... .........+||+.|+|||++.+. .++.++||||+||+
T Consensus 157 ~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~i 236 (361)
T 4f9c_A 157 YALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVI 236 (361)
T ss_dssp EEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHH
T ss_pred EEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHH
Confidence 9999999997553321100 001112345799999999998775 48999999999999
Q ss_pred HHHHHhCCCCCCCcc
Q 004218 661 LLEIFTGMSPTHESF 675 (767)
Q Consensus 661 l~el~tg~~p~~~~~ 675 (767)
+|||++|+.||....
T Consensus 237 l~ell~G~~Pf~~~~ 251 (361)
T 4f9c_A 237 FLSLLSGRYPFYKAS 251 (361)
T ss_dssp HHHHHHTCSSSSCCS
T ss_pred HHHHHHCCCCCCCCC
Confidence 999999999996543
No 20
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=2e-45 Score=405.77 Aligned_cols=248 Identities=23% Similarity=0.319 Sum_probs=194.1
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHH---HHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFA---ECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~---e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
++|++.++||+|+||.||+|+.+ +|+.||||++++. .......+.+ ++.+++.++|||||++++++ .+
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f-----~~ 263 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF-----HT 263 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEE-----EC
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEE-----EE
Confidence 57999999999999999999976 4999999999643 1222233333 46677788999999999994 56
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
.+.+|+|||||+||+|.+++..... +++..+..++.||+.||+|||++ |||||||||+|||++.+|.+||+
T Consensus 264 ~~~lylVmEy~~GGdL~~~l~~~~~------l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~ 334 (689)
T 3v5w_A 264 PDKLSFILDLMNGGDLHYHLSQHGV------FSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRIS 334 (689)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEEC
T ss_pred CCEEEEEEecCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEec
Confidence 6788999999999999999976543 99999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc-chhhHh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV-SLVKWV 685 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~-~~~~~~ 685 (767)
|||+|+..... .....+||+.|||||++.+ ..|+.++||||+||++|||++|++||........ .+...+
T Consensus 335 DFGlA~~~~~~--------~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i 406 (689)
T 3v5w_A 335 DLGLACDFSKK--------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMT 406 (689)
T ss_dssp CCTTCEECSSC--------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHH
T ss_pred ccceeeecCCC--------CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhh
Confidence 99999865322 1245679999999999864 5799999999999999999999999976433221 111111
Q ss_pred hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCC-----HHHHHHH
Q 004218 686 ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRID-----IREALRR 747 (767)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt-----~~evl~~ 747 (767)
. ..+...+..+++. +++++.+||+.||++|++ ++|++++
T Consensus 407 ~-~~~~~~p~~~S~~----------------------a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H 450 (689)
T 3v5w_A 407 L-TMAVELPDSFSPE----------------------LRSLLEGLLQRDVNRRLGCLGRGAQEVKES 450 (689)
T ss_dssp H-HCCCCCCTTSCHH----------------------HHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred c-CCCCCCCccCCHH----------------------HHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence 1 1111112222222 223667899999999998 6887764
No 21
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=8.7e-45 Score=405.60 Aligned_cols=251 Identities=24% Similarity=0.356 Sum_probs=202.9
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.++|++.+.||+|+||.||+|.++ +|+.||+|++........+.+.+|+++|+.++|||||++++++ .+...+|
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~-----~~~~~~~ 230 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF-----EDDNEMV 230 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEE-----ECSSEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEE-----EECCEEE
Confidence 368999999999999999999976 5999999999766555667889999999999999999999994 4567889
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC--CceEEcccc
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED--MTAKVGDFG 610 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~--~~~kl~Dfg 610 (767)
+|||||+||+|.+++.... ..+++.++..++.||+.||+|||++ +|+||||||+|||++.+ +.+||+|||
T Consensus 231 iv~E~~~gg~L~~~i~~~~-----~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG 302 (573)
T 3uto_A 231 MIYEFMSGGELFEKVADEH-----NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFG 302 (573)
T ss_dssp EEEECCCCCBHHHHHTCTT-----SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCS
T ss_pred EEEeecCCCcHHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeecc
Confidence 9999999999999986543 2399999999999999999999999 99999999999999854 899999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh--
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN-- 688 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~-- 688 (767)
+|+.+... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||....... .+.......
T Consensus 303 ~a~~~~~~-------~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~-~~~~i~~~~~~ 374 (573)
T 3uto_A 303 LTAHLDPK-------QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE-TLRNVKSCDWN 374 (573)
T ss_dssp SCEECCTT-------SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHTTCCC
T ss_pred ceeEccCC-------CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH-HHHHHHhCCCC
Confidence 99876432 12244679999999999999999999999999999999999999996532211 111111111
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
++......+++. +.+++.+||+.||++|||+.|++++
T Consensus 375 ~~~~~~~~~s~~----------------------~~dli~~~L~~dp~~R~t~~e~l~H 411 (573)
T 3uto_A 375 MDDSAFSGISED----------------------GKDFIRKLLLADPNTRMTIHQALEH 411 (573)
T ss_dssp CCSGGGTTSCHH----------------------HHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred CCcccccCCCHH----------------------HHHHHHHHccCChhHCcCHHHHhcC
Confidence 111111122221 2236778999999999999999874
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-43 Score=416.18 Aligned_cols=373 Identities=23% Similarity=0.246 Sum_probs=250.1
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCcc--CCCCCCCc
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPG--LGNLPFLK 78 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~--~~~l~~L~ 78 (767)
|++|++|||++|...+.++...+..+++|++|+|++|.+.+..|++|+++++|++|+|++|.+++..|.. ++.+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 3456666666664444554444555666666666666666666666666777777777777666544443 66667777
Q ss_pred EEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhh--ccccCeEEccCCcccccCCccccC----
Q 004218 79 MYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNL--SNVLSKLYMGGNRFYGKIPTSIGR---- 152 (767)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~~L~~L~l~~n~i~~~~~~~l~~---- 152 (767)
+|+|++|.+.+. .....+.++++|++|+|++|.+++..+..+..+ ++ |+.|+++.|.+.+..|..+..
T Consensus 127 ~L~Ls~N~l~~~-----~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 127 RLDLSKNQIRSL-----YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp EEEEESCCCCCC-----CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS-SCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred EEECCCCccccc-----ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc-cceEECCCCccccccccchhhcCCc
Confidence 777777766543 223456777777777777777776666666655 33 444444444443322222111
Q ss_pred ----------------------------------------------------------------CCCCCEEECcCCcCcc
Q 004218 153 ----------------------------------------------------------------LRSLTLLNLSYNSISG 168 (767)
Q Consensus 153 ----------------------------------------------------------------l~~L~~L~l~~n~i~~ 168 (767)
.++|+.|++++|.+.+
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 1457777777777776
Q ss_pred cCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcc
Q 004218 169 EILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILS 248 (767)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 248 (767)
..+..|..+++|++|+|++|++.+..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+..+..|..
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 360 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence 66777788888888888888888777778888888888888888888777888888888888888888888766677777
Q ss_pred cccccceeecccccCCCCC----------------------------------------chhhcCCCceeEEEccCCCCC
Q 004218 249 LSSLTTIVNLSKNFLDGTL----------------------------------------PEEIGMLGNVVTIDLSANGLS 288 (767)
Q Consensus 249 l~~l~~~l~l~~n~l~~~~----------------------------------------~~~~~~l~~L~~L~ls~n~l~ 288 (767)
+++|.. +++++|.+++.. +..+..+++|+.|+|++|+++
T Consensus 361 l~~L~~-L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 361 LEKLQT-LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp CCCCCE-EEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCE-EECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 777743 477777765421 111335667777777777665
Q ss_pred CCC------------------------------CcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCC
Q 004218 289 GNL------------------------------PNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGS 338 (767)
Q Consensus 289 ~~~------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (767)
+.. +..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++.
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 322 23355666777777777777766666677777777777777777765
Q ss_pred CCccccccccCceEeccCCcCcCcCCCCccccccccccccCCcCcc
Q 004218 339 IPSDLQNLRALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPKLC 384 (767)
Q Consensus 339 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~~c 384 (767)
.+..+. ++|+.|++++|++++.+|.. +.++..+++.+|||.|
T Consensus 520 ~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 520 SHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCC
T ss_pred Chhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccc
Confidence 555544 67777777777777766643 5678889999999999
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-43 Score=401.87 Aligned_cols=356 Identities=25% Similarity=0.356 Sum_probs=312.3
Q ss_pred eeeecCCCccccCCCCCcEEEccCCccccc-----------------CCcccc--CCCCCCEEEcccccCcccCCccCCC
Q 004218 13 QLWGEIPYDVGDKLPNLLGFNFCFNKFTGK-----------------IPGSLH--NLTNIQIIRMAHNLLEGTVPPGLGN 73 (767)
Q Consensus 13 ~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~ 73 (767)
+++| ||..+. .+++|++|+|++|.+.+. +|..++ ++++|++|+|++|.+.+.+|..+++
T Consensus 194 ~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 194 NITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp EEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 6665 898876 599999999999999985 999999 9999999999999999999999999
Q ss_pred CCCCcEEeecCcc-ccCCCCCCccccccccCC------CCCCEEECcCCcceeecCc--hhhhhccccCeEEccCCcccc
Q 004218 74 LPFLKMYNIGFNK-IVGSGDEGLSFITSLTNS------TRLNFLAFDGNQFEGEIPE--SIGNLSNVLSKLYMGGNRFYG 144 (767)
Q Consensus 74 l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~~L~~L~l~~n~i~~ 144 (767)
+++|++|++++|+ +++. .++..+.++ ++|++|++++|+++ .+|. .++.+++ |++|++++|++++
T Consensus 272 l~~L~~L~Ls~n~~l~~~-----~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~-L~~L~L~~N~l~g 344 (636)
T 4eco_A 272 LPEMQLINVACNRGISGE-----QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK-LGMLECLYNQLEG 344 (636)
T ss_dssp CSSCCEEECTTCTTSCHH-----HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT-CCEEECCSCCCEE
T ss_pred CCCCCEEECcCCCCCccc-----cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC-CCEEeCcCCcCcc
Confidence 9999999999998 7531 245555554 99999999999999 8998 9999998 9999999999998
Q ss_pred cCCccccCCCCCCEEECcCCcCcccCccccCCCCC-CCEEEccCCccccccCcCcccCC--CCceeeCCCCcCCCCCccc
Q 004218 145 KIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQE-LQSLDLAGNQISGSIPNTLGNLK--KLNQIDLSGNELASEIPTS 221 (767)
Q Consensus 145 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~ 221 (767)
.+| .|..+++|++|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|+.|++++|++++..|..
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred chh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 889 8999999999999999999 77888999999 999999999999 7888887655 8999999999999999988
Q ss_pred cc-------CccccccccccCcccCCCCChh-hcccccccceeecccccCCCCCchhhcCCC-------ceeEEEccCCC
Q 004218 222 FG-------NFQNLLSIDLSNNKLNGNIPKE-ILSLSSLTTIVNLSKNFLDGTLPEEIGMLG-------NVVTIDLSANG 286 (767)
Q Consensus 222 ~~-------~l~~L~~L~l~~n~l~~~~~~~-~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~-------~L~~L~ls~n~ 286 (767)
|. .+++|+.|+|++|+++ .+|.. +..+++|. .+++++|.++...+..+..+. +|+.|+|++|.
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~-~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLS-SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCS-EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred hcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCC-EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 88 8889999999999999 55554 55688884 559999999944444444333 99999999999
Q ss_pred CCCCCCcccc--cCcccceeeccCccccCCCCchhhccCCceEEEc------CCcccCCCCCccccccccCceEeccCCc
Q 004218 287 LSGNLPNSFK--NCKSLEKLLMANNKFSGPIPNILAELKGLEVLDL------SSNKLSGSIPSDLQNLRALRSLNLTFNN 358 (767)
Q Consensus 287 l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~l~~N~ 358 (767)
++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|++++|+
T Consensus 500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 500 LT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 99 6777776 99999999999999997 8999999999999999 5688889999999999999999999999
Q ss_pred CcCcCCCCccccccccccccCCcCcccc
Q 004218 359 LEGVVPREGIFRHTSMVHLEGNPKLCLH 386 (767)
Q Consensus 359 l~~~~~~~~~~~~~~~~~l~~Np~~c~~ 386 (767)
++.++.. ..+++..+++.+||+.|..
T Consensus 578 l~~ip~~--~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 578 IRKVNEK--ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp CCBCCSC--CCTTCCEEECCSCTTCEEE
T ss_pred CCccCHh--HhCcCCEEECcCCCCcccc
Confidence 9655443 3378999999999999864
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-43 Score=401.31 Aligned_cols=210 Identities=23% Similarity=0.261 Sum_probs=180.0
Q ss_pred cCCCCCCCEEEccCCccccc--cCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCC-hhhcccc
Q 004218 174 IGQLQELQSLDLAGNQISGS--IPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIP-KEILSLS 250 (767)
Q Consensus 174 ~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~ 250 (767)
+..+++|++|++++|++++. .|..+..+++|++|++++|.+++ .|..|..+++|+.|++++|++.+..| ..+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 34456666667777776644 26667778888888888888774 55788889999999999999987777 6788888
Q ss_pred cccceeecccccCCCCCchhhcCCCceeEEEccCCCCCC-CCCcccccCcccceeeccCccccCCCCchhhccCCceEEE
Q 004218 251 SLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSG-NLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLD 329 (767)
Q Consensus 251 ~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 329 (767)
+|. .+++++|.+.+..|..++.+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++..|..+..+++|+.|+
T Consensus 425 ~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 425 KLL-YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TCC-EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCC-EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 884 45999999998899999999999999999999987 4788999999999999999999998899999999999999
Q ss_pred cCCcccCCCCCccccccccCceEeccCCcCcCcCCCCcccc-ccccccccCCcCccc
Q 004218 330 LSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREGIFR-HTSMVHLEGNPKLCL 385 (767)
Q Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~~~~~l~~Np~~c~ 385 (767)
|++|++++..|..+..+++|+.|++++|+++.+++....++ ++..+++.+||+.|.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 99999998889999999999999999999998777655565 588999999999994
No 25
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=3.5e-43 Score=363.65 Aligned_cols=250 Identities=22% Similarity=0.352 Sum_probs=201.5
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++........+.+.+|+.+++.++||||+++++++. ..+..+
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~~ 93 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL-----VGDELW 93 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEE-----ECCEEE
Confidence 468999999999999999999964 58999999998766666778999999999999999999999864 445679
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccch
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLA 612 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 612 (767)
+||||+++|+|.+++.... +++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 94 lv~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~ 163 (297)
T 3fxz_A 94 VVMEYLAGGSLTDVVTETC-------MDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFC 163 (297)
T ss_dssp EEEECCTTCBHHHHHHHSC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred EEEECCCCCCHHHHHhhcC-------CCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCc
Confidence 9999999999999997643 89999999999999999999999 9999999999999999999999999998
Q ss_pred hhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhccc-
Q 004218 613 RSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPK- 691 (767)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~- 691 (767)
........ ......||+.|+|||++.+..++.++||||+||++|+|++|+.||........ .........+.
T Consensus 164 ~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~~~ 236 (297)
T 3fxz_A 164 AQITPEQS------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA-LYLIATNGTPEL 236 (297)
T ss_dssp EECCSTTC------CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHHHHHHCSCCC
T ss_pred eecCCccc------ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCCCCC
Confidence 76533211 12345699999999999999999999999999999999999999965322111 11111111111
Q ss_pred chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 692 NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 692 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.....+++ .+.+++.+||+.||++|||++|++++
T Consensus 237 ~~~~~~~~----------------------~~~~li~~~l~~dp~~Rps~~ell~h 270 (297)
T 3fxz_A 237 QNPEKLSA----------------------IFRDFLNRCLEMDVEKRGSAKELLQH 270 (297)
T ss_dssp SCGGGSCH----------------------HHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCccccCH----------------------HHHHHHHHHccCChhHCcCHHHHhhC
Confidence 11111111 12236778999999999999999874
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-42 Score=396.75 Aligned_cols=380 Identities=24% Similarity=0.250 Sum_probs=270.1
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEE
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMY 80 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 80 (767)
+++|++|+|++|++++..|.. +..+++|++|++++|++.+..|..++++++|++|+|++|.+++..++.+..+++|++|
T Consensus 80 l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 80 QHRLDTLVLTANPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTT-TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred ccccCeeeCCCCcccccChhh-hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 467888888888887433444 4457788888888888776556667777777777777777775333344446777777
Q ss_pred eecCccccCCCC--------------------------CCccc-------------------------------------
Q 004218 81 NIGFNKIVGSGD--------------------------EGLSF------------------------------------- 97 (767)
Q Consensus 81 ~l~~n~l~~~~~--------------------------~~~~~------------------------------------- 97 (767)
++++|++...+. ..+..
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 777766543211 11000
Q ss_pred --------------------------------cccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCccccc
Q 004218 98 --------------------------------ITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGK 145 (767)
Q Consensus 98 --------------------------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~ 145 (767)
+..+.++++|++|++++|+++ .+|..+..+++ |++|++++|++.+.
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~-L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST-LKKLVLSANKFENL 316 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTT-CCEEECTTCCCSBG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccccc-CCEEECccCCcCcC
Confidence 011344556666666666666 55666666655 66666666666655
Q ss_pred CCccccCCCCCCEEECcCCcCcccCc-cccCCCCCCCEEEccCCcccccc--CcCcccCCCCceeeCCCCcCCCCCcccc
Q 004218 146 IPTSIGRLRSLTLLNLSYNSISGEIL-TEIGQLQELQSLDLAGNQISGSI--PNTLGNLKKLNQIDLSGNELASEIPTSF 222 (767)
Q Consensus 146 ~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 222 (767)
.|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..|..|
T Consensus 317 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 56666666666666666666653333 33667777777777777776554 5667777777777777777777677777
Q ss_pred cCccccccccccCcccCCCCCh-hhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCC---CCcccccC
Q 004218 223 GNFQNLLSIDLSNNKLNGNIPK-EILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGN---LPNSFKNC 298 (767)
Q Consensus 223 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~l 298 (767)
..+++|+.|++++|++.+..+. .+..+++|. .+++++|.+++..|..++.+++|+.|++++|.+++. .+..+..+
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLK-VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCC-EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred cCCccCCeEECCCCcCCCcccchhhhCcccCC-EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 7788888888888887765554 367777774 448888888877788888888888888888888752 33568888
Q ss_pred cccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCC-ccccccccccc
Q 004218 299 KSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPRE-GIFRHTSMVHL 377 (767)
Q Consensus 299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~l 377 (767)
++|+.|++++|++++..|..|..+++|+.|+|++|++++..|..+..+++| .|++++|++++.+|.. ..++++..+++
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 888888888888888888888888889999999998888888888888888 8899999988877764 45678889999
Q ss_pred cCCcCccc
Q 004218 378 EGNPKLCL 385 (767)
Q Consensus 378 ~~Np~~c~ 385 (767)
.+|||.|.
T Consensus 555 ~~N~~~c~ 562 (606)
T 3t6q_A 555 RQNPLDCT 562 (606)
T ss_dssp TTCCEECS
T ss_pred CCCCcccc
Confidence 99999984
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-42 Score=394.55 Aligned_cols=364 Identities=22% Similarity=0.283 Sum_probs=325.4
Q ss_pred CccEEeCCCCeeeecCCCccccCCCCCcEEEccCCc--------------------------------------------
Q 004218 3 SLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNK-------------------------------------------- 38 (767)
Q Consensus 3 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~-------------------------------------------- 38 (767)
.++.|+|++|++.|.+|..++ .|++|++|+|++|.
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~-~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGG-GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CEEEEEecCcccCCcCChHHh-cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 578999999999999998887 59999999999884
Q ss_pred ----------------------------------ccccCCccccCCCCCCEEEcccccCccc-----------------C
Q 004218 39 ----------------------------------FTGKIPGSLHNLTNIQIIRMAHNLLEGT-----------------V 67 (767)
Q Consensus 39 ----------------------------------l~~~~~~~l~~l~~L~~L~l~~n~i~~~-----------------~ 67 (767)
+++ +|..|+++++|++|+|++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 444 788999999999999999999985 9
Q ss_pred CccCC--CCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCc-cee-ecCchhhhh------ccccCeEEc
Q 004218 68 PPGLG--NLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQ-FEG-EIPESIGNL------SNVLSKLYM 137 (767)
Q Consensus 68 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~~L~~L~l 137 (767)
|..++ ++++|++|+|++|++.+ .++..+.++++|++|++++|+ +++ .+|..++.+ ++ |++|++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~-L~~L~L 312 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLT------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK-IQIIYI 312 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCS------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT-CCEEEC
T ss_pred chhhhhcccCCCCEEEecCCcCCc------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC-CCEEEC
Confidence 99999 99999999999999865 567789999999999999998 998 899999987 76 999999
Q ss_pred cCCcccccCCc--cccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCC-CceeeCCCCcC
Q 004218 138 GGNRFYGKIPT--SIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKK-LNQIDLSGNEL 214 (767)
Q Consensus 138 ~~n~i~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~N~l 214 (767)
++|+++ .+|. .++++++|++|++++|.+++.+| .+..+++|++|+|++|++. .+|..+..+++ |++|++++|++
T Consensus 313 ~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 313 GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 999999 7888 99999999999999999998888 8999999999999999999 88989999999 99999999999
Q ss_pred CCCCcccccCcc--ccccccccCcccCCCCChhhc-------ccccccceeecccccCCCCCchhhcCCCceeEEEccCC
Q 004218 215 ASEIPTSFGNFQ--NLLSIDLSNNKLNGNIPKEIL-------SLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSAN 285 (767)
Q Consensus 215 ~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 285 (767)
+ .+|..+..++ +|+.|++++|.+.+..|..+. .++++ +.+++++|.++...+..+..+++|+.|+|++|
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L-~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV-SSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE-EEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC-CEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 8 6788887655 999999999999999998888 77788 44599999999666666778999999999999
Q ss_pred CCCCCCCcccccCc-------ccceeeccCccccCCCCchhh--ccCCceEEEcCCcccCCCCCccccccccCceEec--
Q 004218 286 GLSGNLPNSFKNCK-------SLEKLLMANNKFSGPIPNILA--ELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNL-- 354 (767)
Q Consensus 286 ~l~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l-- 354 (767)
.++.+.+..+..+. +|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 99955544554433 9999999999999 6788876 99999999999999997 8999999999999999
Q ss_pred ----cCCcCcCcCCCC-ccccccccccccCCcC
Q 004218 355 ----TFNNLEGVVPRE-GIFRHTSMVHLEGNPK 382 (767)
Q Consensus 355 ----~~N~l~~~~~~~-~~~~~~~~~~l~~Np~ 382 (767)
++|++.+..|.. ..++++..+++.+|..
T Consensus 546 N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 567788777654 5678899999999986
No 28
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=3.2e-43 Score=368.88 Aligned_cols=285 Identities=34% Similarity=0.562 Sum_probs=218.7
Q ss_pred cCHHHHHHHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCC
Q 004218 445 ISYDELRRATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLD 524 (767)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~ 524 (767)
+++.++...+++|++.+.||+|+||.||+|.+++++.||||++........+.+.+|+++++.++||||+++++++.
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~--- 105 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCD--- 105 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECC---
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEc---
Confidence 33445556789999999999999999999998889999999987666666788999999999999999999999954
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCce
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTA 604 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 604 (767)
..+..++||||+++|+|.+++...... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 106 --~~~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~ 178 (321)
T 2qkw_B 106 --ERNEMILIYKYMENGNLKRHLYGSDLP--TMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVP 178 (321)
T ss_dssp --CTTCCEEEEECCTTCBTGGGSSSSCCC--SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCE
T ss_pred --CCCeEEEEEEcCCCCcHHHHHhccCCC--ccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCE
Confidence 445679999999999999999764421 33589999999999999999999999 99999999999999999999
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc-chhh
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV-SLVK 683 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~-~~~~ 683 (767)
||+|||+++........ .......||+.|+|||++.+..++.++||||||+++|||++|+.||........ ....
T Consensus 179 kl~Dfg~~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~ 254 (321)
T 2qkw_B 179 KITDFGISKKGTELDQT----HLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAE 254 (321)
T ss_dssp EECCCTTCEECSSSSCC----CCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHH
T ss_pred EEeeccccccccccccc----ccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHH
Confidence 99999999754322111 112334589999999999888899999999999999999999999976544322 2222
Q ss_pred Hhhhhccc-chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHH
Q 004218 684 WVESNFPK-NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQK 753 (767)
Q Consensus 684 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 753 (767)
+....... .....+++.+.... .. .....+.+++.+||+.||++|||++|++++|+.+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 255 WAVESHNNGQLEQIVDPNLADKI------RP----ESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp HTHHHHTTTCCCSSSSSSCTTCS------CH----HHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HhhhccccccHHHhcChhhcccc------CH----HHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 22111110 01111111000000 01 111223337779999999999999999999998875
No 29
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.1e-43 Score=365.56 Aligned_cols=270 Identities=24% Similarity=0.346 Sum_probs=209.9
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++........+.+.+|++++++++||||+++++++. ++...+
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~~ 83 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY-----KDKRLN 83 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEe-----cCCeeE
Confidence 367889999999999999999976 48999999986655566788999999999999999999999964 445679
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccch
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLA 612 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 612 (767)
+||||+++|+|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+
T Consensus 84 lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~ 155 (310)
T 3s95_A 84 FITEYIKGGTLRGIIKSMD-----SQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLA 155 (310)
T ss_dssp EEEECCTTCBHHHHHHHCC-----TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTC
T ss_pred EEEEecCCCcHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccc
Confidence 9999999999999997643 2399999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhhhcCCCc--------cccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhH
Q 004218 613 RSLLERIGNQS--------SISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKW 684 (767)
Q Consensus 613 ~~~~~~~~~~~--------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~ 684 (767)
+.......... .........||+.|+|||++.+..++.++||||||+++|||++|..|+.............
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~ 235 (310)
T 3s95_A 156 RLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLN 235 (310)
T ss_dssp EECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBC
T ss_pred eecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhh
Confidence 86544322111 0011124569999999999999999999999999999999999999986643332211111
Q ss_pred hhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhhc
Q 004218 685 VESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLKR 758 (767)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~ 758 (767)
............+++ .+.+++.+||+.||++|||+.|+++.|+.++......
T Consensus 236 ~~~~~~~~~~~~~~~----------------------~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~~ 287 (310)
T 3s95_A 236 VRGFLDRYCPPNCPP----------------------SFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAGH 287 (310)
T ss_dssp HHHHHHHTCCTTCCT----------------------THHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHHC
T ss_pred hhccccccCCCCCCH----------------------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccCc
Confidence 110000000000111 1122677899999999999999999999998876543
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-41 Score=392.06 Aligned_cols=382 Identities=25% Similarity=0.271 Sum_probs=222.4
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEE
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMY 80 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 80 (767)
|++|++|+|++|+++ .+|...+..+++|++|++++|++.+..|..|+++++|++|+|++|.+++..|..++.+++|++|
T Consensus 72 l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 72 LPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred ccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 467888888888887 7887666678888888888888886666778888888888888888887777778888888888
Q ss_pred eecCccccCCCCCCccc--------------------c------------------------------------------
Q 004218 81 NIGFNKIVGSGDEGLSF--------------------I------------------------------------------ 98 (767)
Q Consensus 81 ~l~~n~l~~~~~~~~~~--------------------~------------------------------------------ 98 (767)
++++|++.+.+...+.. +
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 88887765433211000 0
Q ss_pred ---------ccccCC--CCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccC---------------
Q 004218 99 ---------TSLTNS--TRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGR--------------- 152 (767)
Q Consensus 99 ---------~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~--------------- 152 (767)
..+.++ ++|+.|++++|++++..|..+..+++ |++|++++|++.+..|..|.+
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ-LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT-CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc-ccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 011111 12555555555555444444444444 555555555554433332222
Q ss_pred ------------------CCCCCEEECcCCcCcccCccccCCCCCCCEEEccC---------------------------
Q 004218 153 ------------------LRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAG--------------------------- 187 (767)
Q Consensus 153 ------------------l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~--------------------------- 187 (767)
+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~ 389 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred cccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence 23333333333333333333333333333333322
Q ss_pred -CccccccCcCcccCCCCceeeCCCCcCCCCCc-ccccCccccccccccCcccCC-------------------------
Q 004218 188 -NQISGSIPNTLGNLKKLNQIDLSGNELASEIP-TSFGNFQNLLSIDLSNNKLNG------------------------- 240 (767)
Q Consensus 188 -n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~l~~------------------------- 240 (767)
|++.+..|..|..+++|+.|+|++|++++.+| ..|.++++|++|++++|++.+
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 22222223333444444444444444432222 333344444444444443321
Q ss_pred -CCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCC--------cccccCcccceeeccCccc
Q 004218 241 -NIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLP--------NSFKNCKSLEKLLMANNKF 311 (767)
Q Consensus 241 -~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l 311 (767)
..|..+..+++| +.+++++|.+++..+..+..+++|+.|++++|.+++..+ ..|..+++|+.|++++|++
T Consensus 470 ~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 470 DSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred ccCCcccccCCCC-CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 233344444555 333666666665555556666666666666666654311 2256666777777777777
Q ss_pred cCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCCc--cccccccccccCCcCccc
Q 004218 312 SGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREG--IFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~~~~~~l~~Np~~c~ 385 (767)
+.+.+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++.++... .++++..+++.+|||.|.
T Consensus 549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 75445567778888888888888876666667778888888888888887766532 467888999999999995
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.4e-41 Score=384.38 Aligned_cols=369 Identities=21% Similarity=0.210 Sum_probs=231.7
Q ss_pred CccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEee
Q 004218 3 SLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNI 82 (767)
Q Consensus 3 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 82 (767)
++++|||++|+++ .++...+.++++|++|+|++|++.+..|..|.++++|++|+|++|.+++..|..|+.+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 4666777777776 444444445667777777777666666666666777777777777666666666666666666666
Q ss_pred cCccccCCCCCCccccccccCC------------------------CCCCEEECcCCcceeecCchhhhhccccC--eEE
Q 004218 83 GFNKIVGSGDEGLSFITSLTNS------------------------TRLNFLAFDGNQFEGEIPESIGNLSNVLS--KLY 136 (767)
Q Consensus 83 ~~n~l~~~~~~~~~~~~~l~~l------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~~L~--~L~ 136 (767)
++|++...+ +..+.++ ++|++|++++|++++..|..+..+.+ |+ +|+
T Consensus 113 ~~n~i~~l~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~l~L~ 185 (606)
T 3t6q_A 113 IQTGISSID------FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATNLSLN 185 (606)
T ss_dssp TTSCCSCGG------GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT-CCSEEEE
T ss_pred cccCcccCC------cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc-cceeEEe
Confidence 666665421 1223444 44444555544444444444444444 44 444
Q ss_pred ccCCcccccCCccccCC---------------------------------------------------CCCCEEECcCCc
Q 004218 137 MGGNRFYGKIPTSIGRL---------------------------------------------------RSLTLLNLSYNS 165 (767)
Q Consensus 137 l~~n~i~~~~~~~l~~l---------------------------------------------------~~L~~L~l~~n~ 165 (767)
+++|++.+..|..+... .+|+.|++++|.
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 44444443333222110 033344444444
Q ss_pred CcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCCh-
Q 004218 166 ISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPK- 244 (767)
Q Consensus 166 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 244 (767)
+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.++.
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred cCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 44444445667777888888888877 6677777778888888888887766677777777777777777777755554
Q ss_pred hhcccccccceeecccccCCCCC--chhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCc-hhhc
Q 004218 245 EILSLSSLTTIVNLSKNFLDGTL--PEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPN-ILAE 321 (767)
Q Consensus 245 ~~~~l~~l~~~l~l~~n~l~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~ 321 (767)
.+..+++|. .+++++|.+++.. +..++.+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+. .+..
T Consensus 345 ~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 345 CLENLENLR-ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TTTTCTTCC-EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhccCcCC-EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 366677763 3477777777554 56677777777777777777766677777777777777777777765443 3667
Q ss_pred cCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcC-CC---CccccccccccccCCc
Q 004218 322 LKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVV-PR---EGIFRHTSMVHLEGNP 381 (767)
Q Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~---~~~~~~~~~~~l~~Np 381 (767)
+++|+.|++++|.+++..|..+..+++|++|++++|++++.. +. ...++++..+++.+|.
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 777777777777777666777777777777777777776521 11 1334556666666664
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.7e-41 Score=390.65 Aligned_cols=363 Identities=23% Similarity=0.339 Sum_probs=260.8
Q ss_pred CccEEeCCCCeeeecCCCccccCCCCCcEEEc-cCCccccc---------------------------------------
Q 004218 3 SLVYLGLASNQLWGEIPYDVGDKLPNLLGFNF-CFNKFTGK--------------------------------------- 42 (767)
Q Consensus 3 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l-~~n~l~~~--------------------------------------- 42 (767)
.++.|+|++|++.|.+|..++ .|++|++|+| ++|.+.|.
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~-~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGG-GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CEEEEECccCCCCCcCchHHh-ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 578899999999999998887 4999999999 77754433
Q ss_pred -------------------------------------CCccccCCCCCCEEEcccccCcc-----------------cCC
Q 004218 43 -------------------------------------IPGSLHNLTNIQIIRMAHNLLEG-----------------TVP 68 (767)
Q Consensus 43 -------------------------------------~~~~l~~l~~L~~L~l~~n~i~~-----------------~~~ 68 (767)
+|..|+++++|++|+|++|.+++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 78889999999999999999997 388
Q ss_pred ccCC--CCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCc-cee-ecCchhhhhc-------cccCeEEc
Q 004218 69 PGLG--NLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQ-FEG-EIPESIGNLS-------NVLSKLYM 137 (767)
Q Consensus 69 ~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~-------~~L~~L~l 137 (767)
..++ ++++|++|+|++|++.+ .++..+.++++|+.|+|++|+ +++ .+|..++.+. + |++|+|
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~------~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~-L~~L~L 555 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMT------QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-IQIFYM 555 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCC------SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT-CCEEEC
T ss_pred hhhhhccCCCCCEEECcCCCCCc------cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC-ccEEEe
Confidence 8888 99999999999998764 566788899999999999998 887 7888888877 6 999999
Q ss_pred cCCcccccCCc--cccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCC-CceeeCCCCcC
Q 004218 138 GGNRFYGKIPT--SIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKK-LNQIDLSGNEL 214 (767)
Q Consensus 138 ~~n~i~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~N~l 214 (767)
++|+++ .+|. .|.++++|++|+|++|.++ .+| .|..+++|++|+|++|++. .+|..+..+++ |+.|+|++|++
T Consensus 556 s~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 556 GYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred eCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 999998 7787 8999999999999999998 666 8888999999999999988 78888888888 99999999888
Q ss_pred CCCCcccccCccc--cccccccCcccCCCCC----------------------------hhhc-ccccccceeecccccC
Q 004218 215 ASEIPTSFGNFQN--LLSIDLSNNKLNGNIP----------------------------KEIL-SLSSLTTIVNLSKNFL 263 (767)
Q Consensus 215 ~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~----------------------------~~~~-~l~~l~~~l~l~~n~l 263 (767)
+ .+|..+..++. |+.|+|++|++.+.+| ..+. .+++| +.|+|++|.+
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L-~~L~Ls~N~L 709 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI-STIILSNNLM 709 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCC-SEEECCSCCC
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCC-CEEECCCCcC
Confidence 7 56666655433 6666666666654433 2222 34444 2235555555
Q ss_pred CCCCchh-hcC-------CCceeEEEccCCCCCCCCCcccc--cCcccceeeccCccccCCCCchhhccCCceEEEcCC-
Q 004218 264 DGTLPEE-IGM-------LGNVVTIDLSANGLSGNLPNSFK--NCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSS- 332 (767)
Q Consensus 264 ~~~~~~~-~~~-------l~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~- 332 (767)
+ .+|.. +.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus 710 ~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 710 T-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp S-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred C-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 5 22222 221 125666666666665 4455554 56666666666666664 455566666666666654
Q ss_pred -----cccCCCCCccccccccCceEeccCCcCcCcCCCCccccccccccccCCcCcc
Q 004218 333 -----NKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPKLC 384 (767)
Q Consensus 333 -----N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~~c 384 (767)
|.+.+.+|..+..+++|+.|+|++|++..+ |.. ..+++..+++.+||+..
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I-p~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV-DEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSC-CCSSSCEEECCSCTTCE
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCCCcc-CHh-hcCCCCEEECCCCCCCc
Confidence 555556666666666666666666666333 222 22455666666666543
No 33
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=9.6e-43 Score=366.35 Aligned_cols=289 Identities=36% Similarity=0.570 Sum_probs=221.9
Q ss_pred CCCCccCHHHHHHHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCC-cchhhHHHHHHHHhcCCCCCceeEEe
Q 004218 440 HSPQMISYDELRRATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIEST-GTWKSFFAECEALRNTRHRNLVKLIT 518 (767)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~ 518 (767)
.....++++++....++|++.+.||+|+||.||+|...+++.||||++..... .....+.+|+++++.++||||+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence 34567889999999999999999999999999999988899999999865432 23447899999999999999999999
Q ss_pred eeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee
Q 004218 519 SCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL 598 (767)
Q Consensus 519 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~ 598 (767)
++. .....++||||+++|+|.+++...... ...+++..+..++.|++.||+|||+++..+|+||||||+||++
T Consensus 95 ~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~ 167 (326)
T 3uim_A 95 FCM-----TPTERLLVYPYMANGSVASCLRERPES--QPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILL 167 (326)
T ss_dssp EEC-----CSSCCEEEEECCTTCBHHHHHHCCSTT--CCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEE
T ss_pred EEe-----cCCceEEEEEeccCCCHHHHHHhcccc--CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEE
Confidence 964 344568999999999999999865432 3459999999999999999999999766699999999999999
Q ss_pred CCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcc---
Q 004218 599 DEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESF--- 675 (767)
Q Consensus 599 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~--- 675 (767)
+.++.+||+|||.++...... ........||+.|+|||++.+..++.++||||+|+++|+|++|+.||+...
T Consensus 168 ~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~ 242 (326)
T 3uim_A 168 DEEFEAVVGDFGLAKLMDYKD-----THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLAN 242 (326)
T ss_dssp CTTCCEEECCCSSCEECCSSS-----SCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTT
T ss_pred CCCCCEEeccCccccccCccc-----ccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccccccccc
Confidence 999999999999997653221 112234558999999999988889999999999999999999999996321
Q ss_pred cCCcchhhHhhhhcccc-hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHH
Q 004218 676 AGEVSLVKWVESNFPKN-AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKN 750 (767)
Q Consensus 676 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~ 750 (767)
........+........ .....+..+.... . .+.... +.+++.+||+.||++|||++|++++|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~-l~~li~~cl~~dP~~Rps~~ell~~L~~ 308 (326)
T 3uim_A 243 DDDVMLLDWVKGLLKEKKLEALVDVDLQGNY------K---DEEVEQ-LIQVALLCTQSSPMERPKMSEVVRMLEG 308 (326)
T ss_dssp TSCSBHHHHHTTTTSSCCSTTSSCTTCTTSC------C---HHHHHH-HHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred ccchhHHHHHHHHhhchhhhhhcChhhcccc------C---HHHHHH-HHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence 12223333433322221 1111111110000 0 111122 2237779999999999999999999975
No 34
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=6.8e-43 Score=363.28 Aligned_cols=268 Identities=29% Similarity=0.420 Sum_probs=198.8
Q ss_pred HHHHHHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc
Q 004218 448 DELRRATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF 525 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 525 (767)
+++....++|++.+.||+|+||.||+|++. ++.||||++.... ....+.+.+|++++++++||||+++++++.
T Consensus 30 ~~~~i~~~~y~i~~~lG~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---- 104 (309)
T 3p86_A 30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT---- 104 (309)
T ss_dssp --CBCCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred ccccCChhHceeeeEeecCCCeEEEEEEEC-CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE----
Confidence 334445678999999999999999999885 8899999986543 233467889999999999999999999964
Q ss_pred ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEeecCCCCCeeeCCCCc
Q 004218 526 KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVP--IVHCDLKPGNILLDEDMT 603 (767)
Q Consensus 526 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~~~~~ 603 (767)
.....++||||+++|+|.+++..... ...+++..++.++.|++.||+|||++ + |+||||||+||+++.++.
T Consensus 105 -~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~ 177 (309)
T 3p86_A 105 -QPPNLSIVTEYLSRGSLYRLLHKSGA---REQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYT 177 (309)
T ss_dssp -STTCCEEEEECCTTCBHHHHHHSTTH---HHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCC
T ss_pred -ECCceEEEEecCCCCcHHHHHhhcCC---CCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCc
Confidence 44557999999999999999976432 12389999999999999999999998 8 999999999999999999
Q ss_pred eEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhh
Q 004218 604 AKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVK 683 (767)
Q Consensus 604 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~ 683 (767)
+||+|||+++...... .......||+.|+|||++.+..++.++||||+|+++|+|++|+.||....... ...
T Consensus 178 ~kL~Dfg~a~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~--~~~ 249 (309)
T 3p86_A 178 VKVCDFGLSRLKASTF------LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ--VVA 249 (309)
T ss_dssp EEECCCC-----------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHH--HHH
T ss_pred EEECCCCCCccccccc------cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHH
Confidence 9999999997543321 11234568999999999999999999999999999999999999996532211 111
Q ss_pred Hhh-hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 004218 684 WVE-SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLK 757 (767)
Q Consensus 684 ~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 757 (767)
.+. .......+..+++. +.+++.+||+.||++|||++|+++.|+.+.+....
T Consensus 250 ~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p 302 (309)
T 3p86_A 250 AVGFKCKRLEIPRNLNPQ----------------------VAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVP 302 (309)
T ss_dssp HHHHSCCCCCCCTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC----
T ss_pred HHHhcCCCCCCCccCCHH----------------------HHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCC
Confidence 111 01111111112221 22267789999999999999999999988765443
No 35
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=4.5e-42 Score=359.39 Aligned_cols=263 Identities=25% Similarity=0.362 Sum_probs=207.7
Q ss_pred CCccCHHHHHHHhcC----------CCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCC
Q 004218 442 PQMISYDELRRATGN----------FSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRH 510 (767)
Q Consensus 442 ~~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h 510 (767)
...+++++++.+++. |+..+.||+|+||.||+|... +|+.||||++........+.+.+|+.++++++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h 101 (321)
T 2c30_A 22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQH 101 (321)
T ss_dssp ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCC
T ss_pred CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCC
Confidence 356788888888765 677789999999999999976 699999999987666667789999999999999
Q ss_pred CCceeEEeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 004218 511 RNLVKLITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCD 590 (767)
Q Consensus 511 ~niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D 590 (767)
|||+++++++. .....++||||+++|+|.+++.... +++..+..++.|++.||+|||+. +|+|||
T Consensus 102 ~niv~~~~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~-------l~~~~~~~i~~qi~~~L~~LH~~---~ivH~D 166 (321)
T 2c30_A 102 FNVVEMYKSYL-----VGEELWVLMEFLQGGALTDIVSQVR-------LNEEQIATVCEAVLQALAYLHAQ---GVIHRD 166 (321)
T ss_dssp TTBCCEEEEEE-----ETTEEEEEECCCCSCBHHHHHTTCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCC
T ss_pred CCcceEEEEEE-----ECCEEEEEEecCCCCCHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHHC---CeecCC
Confidence 99999999964 3456799999999999999986532 99999999999999999999999 999999
Q ss_pred CCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCC
Q 004218 591 LKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSP 670 (767)
Q Consensus 591 lkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p 670 (767)
|||+||+++.++.+||+|||++........ ......||+.|+|||++.+..++.++||||+|+++|+|++|+.|
T Consensus 167 lkp~NIll~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p 240 (321)
T 2c30_A 167 IKSDSILLTLDGRVKLSDFGFCAQISKDVP------KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPP 240 (321)
T ss_dssp CSGGGEEECTTCCEEECCCTTCEECCSSSC------CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCHHHEEECCCCcEEEeeeeeeeecccCcc------ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999976533211 12345689999999999999999999999999999999999999
Q ss_pred CCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 671 THESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
|...... .....+....+.... ......+ .+.+++.+||+.||++|||++|++++
T Consensus 241 f~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~~~----~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 241 YFSDSPV--QAMKRLRDSPPPKLK----------------NSHKVSP----VLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp TTTSCHH--HHHHHHHHSSCCCCT----------------TGGGSCH----HHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred CCCCCHH--HHHHHHhcCCCCCcC----------------ccccCCH----HHHHHHHHHccCChhhCcCHHHHhcC
Confidence 9653211 111111111111000 0000111 12236678999999999999999875
No 36
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=6.2e-42 Score=365.20 Aligned_cols=266 Identities=24% Similarity=0.400 Sum_probs=206.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC--------CCcEEEEEEeeccCC-cchhhHHHHHHHHhcC-CCCCceeEEeeeecC
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR--------EGISVAVKVLDIEST-GTWKSFFAECEALRNT-RHRNLVKLITSCSSL 523 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~ 523 (767)
.++|++.+.||+|+||.||+|.+. ++..||||+++.... ...+.+.+|+++++.+ +||||+++++++.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~-- 157 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-- 157 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC--
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc--
Confidence 467899999999999999999862 356799999965432 3456789999999999 8999999999964
Q ss_pred CcccceeeEEEEeecCCCChhhhhcccCCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCC
Q 004218 524 DFKNMEFLALVYEFLGNGSLGDWIHGERKN----------EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKP 593 (767)
Q Consensus 524 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp 593 (767)
..+.+++||||+++|+|.+++...+.. .....+++.+++.++.|++.||+|||++ +|+||||||
T Consensus 158 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp 231 (370)
T 2psq_A 158 ---QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA 231 (370)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCG
T ss_pred ---cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccch
Confidence 445679999999999999999865421 1123589999999999999999999999 999999999
Q ss_pred CCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCC
Q 004218 594 GNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTH 672 (767)
Q Consensus 594 ~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~ 672 (767)
+||+++.++.+||+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.
T Consensus 232 ~NIll~~~~~~kl~DFG~a~~~~~~~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~ 307 (370)
T 2psq_A 232 RNVLVTENNVMKIADFGLARDINNIDYY----KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP 307 (370)
T ss_dssp GGEEECTTCCEEECCCSSCEETTCCCTT----CTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred hhEEECCCCCEEEccccCCcccCcccce----ecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999865432211 11233457889999999999999999999999999999999 999986
Q ss_pred CcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHH
Q 004218 673 ESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQ 752 (767)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 752 (767)
..... .....+........+..+... +.+++.+||+.||++|||+.|+++.|+.+.
T Consensus 308 ~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dP~~Rpt~~ell~~L~~il 363 (370)
T 2psq_A 308 GIPVE--ELFKLLKEGHRMDKPANCTNE----------------------LYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 363 (370)
T ss_dssp TCCGG--GHHHHHHTTCCCCCCTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCHH--HHHHHHhcCCCCCCCCCCCHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 53221 122222221111111111211 222667899999999999999999999987
Q ss_pred HHH
Q 004218 753 KIL 755 (767)
Q Consensus 753 ~~~ 755 (767)
...
T Consensus 364 ~~~ 366 (370)
T 2psq_A 364 TLT 366 (370)
T ss_dssp HHH
T ss_pred HHh
Confidence 644
No 37
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=2.1e-42 Score=361.82 Aligned_cols=250 Identities=26% Similarity=0.369 Sum_probs=199.2
Q ss_pred HHhcCCCCCCccccccceEEEEEEe-CCCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYL-REGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
...++|++.+.||+|+||.||+|.+ .+|+.||||++.... ....+.+.+|+++++.++||||+++++++. ..
T Consensus 12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~ 86 (328)
T 3fe3_A 12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIE-----TE 86 (328)
T ss_dssp CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CS
T ss_pred CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----EC
Confidence 3457899999999999999999997 469999999996542 234567889999999999999999999954 45
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
...++||||+++|+|.+++..... +++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 87 ~~~~lv~e~~~~~~L~~~l~~~~~------l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~D 157 (328)
T 3fe3_A 87 KTLYLIMEYASGGEVFDYLVAHGR------MKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIAD 157 (328)
T ss_dssp SEEEEEECCCTTCBHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECS
T ss_pred CEEEEEEECCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEee
Confidence 678999999999999999976543 99999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCC-CcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPS-TAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~ 687 (767)
||++...... .......||+.|+|||++.+..+. .++||||+||++|+|++|+.||...... .....+..
T Consensus 158 FG~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~i~~ 228 (328)
T 3fe3_A 158 FGFSNEFTVG-------GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK--ELRERVLR 228 (328)
T ss_dssp TTCCGGGSSS-------CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH
T ss_pred ccCceecCCC-------CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH--HHHHHHHh
Confidence 9999765322 122445799999999999887764 7899999999999999999999653211 11111111
Q ss_pred hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 688 NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
... ..+..+++. +.+++.+||+.||++|||++|++++
T Consensus 229 ~~~-~~p~~~s~~----------------------~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 229 GKY-RIPFYMSTD----------------------CENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp CCC-CCCTTSCHH----------------------HHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred CCC-CCCCCCCHH----------------------HHHHHHHHCCCChhHCcCHHHHhcC
Confidence 000 011111111 2236778999999999999999875
No 38
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.3e-42 Score=361.03 Aligned_cols=264 Identities=25% Similarity=0.380 Sum_probs=203.6
Q ss_pred hcCCCCCCccccccceEEEEEEeC----CCcEEEEEEeecc-CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR----EGISVAVKVLDIE-STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
.++|++.+.||+|+||.||+|.+. .+..||||++... .....+.+.+|+++++.++||||+++++++. .+
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 122 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVT-----RG 122 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----GG
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eC
Confidence 457888999999999999999975 3556999999754 2334567899999999999999999999963 45
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
...++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~D 194 (325)
T 3kul_A 123 RLAMIVTEYMENGSLDTFLRTHD-----GQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSD 194 (325)
T ss_dssp GCCEEEEECCTTCBHHHHHHTTT-----TCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred CccEEEeeCCCCCcHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECC
Confidence 56799999999999999996543 2399999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~ 687 (767)
||+++......... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...... .....+..
T Consensus 195 fg~a~~~~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~~ 269 (325)
T 3kul_A 195 FGLSRVLEDDPDAA---YTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR--DVISSVEE 269 (325)
T ss_dssp CSSCEECC----CC---EECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH--HHHHHHHT
T ss_pred CCcccccccCccce---eeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHHc
Confidence 99998664432111 11223346778999999988889999999999999999999 99998653221 11111211
Q ss_pred hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 004218 688 NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLK 757 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 757 (767)
.........+.+. +.+++.+||+.||++|||+.|+++.|+.+.+....
T Consensus 270 ~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~ 317 (325)
T 3kul_A 270 GYRLPAPMGCPHA----------------------LHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPES 317 (325)
T ss_dssp TCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC-
T ss_pred CCCCCCCCCcCHH----------------------HHHHHHHHccCChhhCcCHHHHHHHHHHHHhCccc
Confidence 1111111111211 22267789999999999999999999998775443
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-41 Score=383.53 Aligned_cols=370 Identities=23% Similarity=0.265 Sum_probs=254.0
Q ss_pred CccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEee
Q 004218 3 SLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNI 82 (767)
Q Consensus 3 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 82 (767)
++++|||++|+++ .++...+..+++|++|+|++|++.+..|..|.++++|++|+|++|.+++..|..|+.+++|++|++
T Consensus 29 ~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 4667777777776 455544555677777777777776655666677777777777777766555566666666666666
Q ss_pred cCccccCCCCCCccccccccCCCCCCEEECcCCccee-ecCchhhhhccccCeEEccCCcccccCCccccCCC-------
Q 004218 83 GFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEG-EIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLR------- 154 (767)
Q Consensus 83 ~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~------- 154 (767)
++|++...+.. .+.++++|++|++++|.+++ .+|..++++++ |++|++++|++++..+..++.++
T Consensus 108 ~~n~l~~l~~~------~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 108 VETNLASLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp TTSCCCCSTTC------SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred cccccccCCCc------cccccccccEEecCCCccceecChhhhcccCC-CCEEeCcCCccceecHHHccchhccchhhh
Confidence 66666543221 24455555555555555553 24555555555 55555555555544444443333
Q ss_pred --------------------------------------------------------------------------------
Q 004218 155 -------------------------------------------------------------------------------- 154 (767)
Q Consensus 155 -------------------------------------------------------------------------------- 154 (767)
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence
Q ss_pred ----------------------CCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcC-c-------------
Q 004218 155 ----------------------SLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNT-L------------- 198 (767)
Q Consensus 155 ----------------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~------------- 198 (767)
+|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.. +
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBS
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcc
Confidence 3444444444443 233333333 4444444444433 22211 0
Q ss_pred ------ccCCCCceeeCCCCcCCCCC--cccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCc-h
Q 004218 199 ------GNLKKLNQIDLSGNELASEI--PTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLP-E 269 (767)
Q Consensus 199 ------~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~-~ 269 (767)
..+++|++|++++|++++.. +..+..+++|++|++++|.+.+ ++..+..+++|. .+++++|.+.+..+ .
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~-~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE-HLDFQHSNLKQMSEFS 415 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCC-EEECTTSEEESCTTSC
T ss_pred ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCC-EEEccCCccccccchh
Confidence 34566666666666665432 4556677778888888887774 344477888884 44899998887665 5
Q ss_pred hhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCcccc-CCCCchhhccCCceEEEcCCcccCCCCCcccccccc
Q 004218 270 EIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFS-GPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRA 348 (767)
Q Consensus 270 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (767)
.+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|+|++|++++..|..+..+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 7889999999999999999889999999999999999999998 578899999999999999999999888999999999
Q ss_pred CceEeccCCcCcCcCCCC-ccccccccccccCCcCccc
Q 004218 349 LRSLNLTFNNLEGVVPRE-GIFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 349 L~~L~l~~N~l~~~~~~~-~~~~~~~~~~l~~Np~~c~ 385 (767)
|+.|++++|++++.++.. ..++++..+++.+||+.|.
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 999999999999988764 5678889999999999885
No 40
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=7.3e-42 Score=349.05 Aligned_cols=257 Identities=27% Similarity=0.435 Sum_probs=205.2
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLAL 533 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 533 (767)
.++|++.+.||+|+||.||+|.+.+++.||+|++.... ...+++.+|++++++++||||+++++++. +....++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~l 82 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPICL 82 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSEEE
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCceEE
Confidence 35788999999999999999999889999999997443 33467899999999999999999999964 4456799
Q ss_pred EEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 534 VYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 534 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
||||+++++|.+++.... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.++
T Consensus 83 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 154 (269)
T 4hcu_A 83 VFEFMEHGCLSDYLRTQR-----GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTR 154 (269)
T ss_dssp EEECCTTCBHHHHHHTTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGG
T ss_pred EEEeCCCCcHHHHHHhcC-----cccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccc
Confidence 999999999999997643 2489999999999999999999999 99999999999999999999999999998
Q ss_pred hhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhcccc
Q 004218 614 SLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPKN 692 (767)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~ 692 (767)
....... .......+|+.|+|||++.+..++.++||||+|+++|+|++ |+.||...... .....+.......
T Consensus 155 ~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~--~~~~~~~~~~~~~ 227 (269)
T 4hcu_A 155 FVLDDQY-----TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTGFRLY 227 (269)
T ss_dssp GBCCHHH-----HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCCCC
T ss_pred ccccccc-----ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHhcCccCC
Confidence 6543211 11123446788999999988899999999999999999999 99998653221 1111122111111
Q ss_pred hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHH
Q 004218 693 AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQK 753 (767)
Q Consensus 693 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 753 (767)
.+...++. +.+++.+||+.||++|||++|++++|+++.+
T Consensus 228 ~~~~~~~~----------------------~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~ 266 (269)
T 4hcu_A 228 KPRLASTH----------------------VYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266 (269)
T ss_dssp CCTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCcCCHH----------------------HHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence 11222221 2226678999999999999999999998865
No 41
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.1e-42 Score=360.77 Aligned_cols=251 Identities=26% Similarity=0.368 Sum_probs=192.1
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
..++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+++++.++||||+++++++. ....
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~-----~~~~ 82 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLE-----TANK 82 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----eCCE
Confidence 4578999999999999999999974 59999999986543 234567889999999999999999999954 4566
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||+++|+|.+++..... +++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||
T Consensus 83 ~~lv~E~~~gg~L~~~l~~~~~------l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG 153 (347)
T 3zgw_A 83 IFMVLEYCPGGELFDYIISQDR------LSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFG 153 (347)
T ss_dssp EEEEEECCTTCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred EEEEEeCCCCCCHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEecc
Confidence 8999999999999999976443 99999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh-hhh
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV-ESN 688 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~-~~~ 688 (767)
++........ .......||+.|+|||++.+..+ +.++||||+||++|+|++|+.||...... .....+ ...
T Consensus 154 ~a~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~ 226 (347)
T 3zgw_A 154 LCAKPKGNKD-----YHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVM--ALYKKIMRGK 226 (347)
T ss_dssp TCBC-------------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTC
T ss_pred CcccccCCCC-----ccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCC
Confidence 9875433211 11234568999999999988775 89999999999999999999999653211 111111 111
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
++ .+..+++. +.+++.+||+.||++|||++|++++-
T Consensus 227 ~~--~p~~~s~~----------------------~~~li~~~L~~dP~~Rps~~eil~hp 262 (347)
T 3zgw_A 227 YD--VPKWLSPS----------------------SILLLQQMLQVDPKKRISMKNLLNHP 262 (347)
T ss_dssp CC--CCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHTCH
T ss_pred CC--CCCCCCHH----------------------HHHHHHHHcccCHhHCcCHHHHhcCc
Confidence 11 11111111 12266789999999999999999863
No 42
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=4.9e-42 Score=359.25 Aligned_cols=254 Identities=24% Similarity=0.322 Sum_probs=198.9
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.+++.++||||+++++++. .+...
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~ 80 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ 80 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cCCeE
Confidence 468999999999999999999976 58999999986443 233467889999999999999999999954 45667
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~ 151 (323)
T 3tki_A 81 YLFLEYCSGGELFDRIEPDI------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGL 151 (323)
T ss_dssp EEEEECCTTEEGGGGSBTTT------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEEEcCCCCcHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeec
Confidence 99999999999999997543 399999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFP 690 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 690 (767)
++....... ........||+.|+|||++.+..+ +.++||||+||++|+|++|+.||............+......
T Consensus 152 a~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~ 227 (323)
T 3tki_A 152 ATVFRYNNR----ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY 227 (323)
T ss_dssp CEECEETTE----ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTT
T ss_pred cceeccCCc----ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhccccc
Confidence 976533211 111234569999999999887775 778999999999999999999997654433333333222111
Q ss_pred cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 691 KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 691 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
......+++. +.+++.+||+.||++|||++|++++
T Consensus 228 ~~~~~~~~~~----------------------~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 228 LNPWKKIDSA----------------------PLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp STTGGGSCHH----------------------HHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCccccCCHH----------------------HHHHHHHHccCChhhCcCHHHHhhC
Confidence 1111112211 1226678999999999999999875
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.4e-41 Score=377.60 Aligned_cols=358 Identities=22% Similarity=0.269 Sum_probs=285.1
Q ss_pred cEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecC
Q 004218 5 VYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGF 84 (767)
Q Consensus 5 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 84 (767)
++||+++|+++ .+|..++ ++|++|++++|.+.+..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57888888888 7887765 6888888888888876667888888888888888888877788888888888888888
Q ss_pred ccccCCCCCCccccccccCCCCCCEEECcCCccee-ecCchhhhhccccCeEEccCCcccccCCccccCCCCC--CEEEC
Q 004218 85 NKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEG-EIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSL--TLLNL 161 (767)
Q Consensus 85 n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l 161 (767)
|+++. ++.. .+++|++|++++|++++ .+|..++++++ |++|++++|++++ ..+..+++| ++|++
T Consensus 79 N~l~~-------lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~-L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 79 NKLVK-------ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ-LKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp SCCCE-------EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT-CCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred Cceee-------cCcc--ccCCccEEeccCCccccccchhhhccCCc-ceEEEecCcccch---hhccccccceeeEEEe
Confidence 88863 3333 67888888888888876 46788888887 8888888888874 345666666 88888
Q ss_pred cCCcC--cccCccccCCCC-------------------------------------------------------------
Q 004218 162 SYNSI--SGEILTEIGQLQ------------------------------------------------------------- 178 (767)
Q Consensus 162 ~~n~i--~~~~~~~~~~l~------------------------------------------------------------- 178 (767)
++|.+ .+..|..+..+.
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L 225 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhc
Confidence 88777 445555444422
Q ss_pred ----------------------CCCEEEccCCccccccCcCc-----ccCCCCceeeCCCCcC-----------------
Q 004218 179 ----------------------ELQSLDLAGNQISGSIPNTL-----GNLKKLNQIDLSGNEL----------------- 214 (767)
Q Consensus 179 ----------------------~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~N~l----------------- 214 (767)
+|++|++++|++.+.+|..+ ..+++|+.+++++|.+
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCS
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCcee
Confidence 67777777777776777766 5565555555555554
Q ss_pred ---------CCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCC--CCchhhcCCCceeEEEcc
Q 004218 215 ---------ASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDG--TLPEEIGMLGNVVTIDLS 283 (767)
Q Consensus 215 ---------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~--~~~~~~~~l~~L~~L~ls 283 (767)
.... .+..+++|++|++++|++++..|..+..+++|. .+++++|++++ ..|..++.+++|+.|+++
T Consensus 306 ~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 306 NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELE-TLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC-EEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCC-EEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 2211 126789999999999999988999999999995 45999999997 456789999999999999
Q ss_pred CCCCCCCCC-cccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCc
Q 004218 284 ANGLSGNLP-NSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGV 362 (767)
Q Consensus 284 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 362 (767)
+|.+++.+| ..+..+++|+.|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++.+
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l 459 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV 459 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCcc
Confidence 999998444 4588999999999999999877776554 78999999999999 7888888999999999999999987
Q ss_pred CCC-CccccccccccccCCcCccc
Q 004218 363 VPR-EGIFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 363 ~~~-~~~~~~~~~~~l~~Np~~c~ 385 (767)
++. ...++++..+++.+||+.|.
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CHHHhccCCcccEEECcCCCCccc
Confidence 765 45678889999999999984
No 44
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=1.8e-42 Score=362.96 Aligned_cols=285 Identities=23% Similarity=0.289 Sum_probs=204.7
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLAL 533 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 533 (767)
.++|++.+.||+|+||.||+|++. ++.||||++.... .......+|+.++++++||||+++++++.... .....+++
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~~~~~~l 99 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGT-SVDVDLWL 99 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCC-CCCceEEE
Confidence 468999999999999999999987 8899999996432 23345567899999999999999999976432 22456799
Q ss_pred EEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC-------CCCeEeecCCCCCeeeCCCCceEE
Q 004218 534 VYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDC-------EVPIVHCDLKPGNILLDEDMTAKV 606 (767)
Q Consensus 534 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-------~~~ivH~Dlkp~NIl~~~~~~~kl 606 (767)
||||+++|+|.+++.... +++..++.++.|++.||+|||+.. ..+|+||||||+||+++.++.+||
T Consensus 100 v~e~~~~g~L~~~l~~~~-------~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL 172 (322)
T 3soc_A 100 ITAFHEKGSLSDFLKANV-------VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACI 172 (322)
T ss_dssp EEECCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEE
T ss_pred EEecCCCCCHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEE
Confidence 999999999999997543 899999999999999999999741 238999999999999999999999
Q ss_pred ccccchhhhhhhcCCCccccccccccCCCCccCccccCCC-----CCCCcccchhhhHHHHHHHhCCCCCCCcccCCcch
Q 004218 607 GDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-----KPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSL 681 (767)
Q Consensus 607 ~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~ 681 (767)
+|||+++........ .......||+.|+|||++.+. .++.++|||||||++|||++|+.||..........
T Consensus 173 ~DFg~a~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~ 248 (322)
T 3soc_A 173 ADFGLALKFEAGKSA----GDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLP 248 (322)
T ss_dssp CCCTTCEEECTTSCC----CCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCT
T ss_pred ccCCcccccccccCc----cccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccc
Confidence 999999765443211 122345689999999998863 45668899999999999999999997644332211
Q ss_pred hhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 682 VKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
........+. .........................+. ..+.+++.+||+.||++|||++|+++.|+.+.+.
T Consensus 249 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 249 FEEEIGQHPS-LEDMQEVVVHKKKRPVLRDYWQKHAGM-AMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp THHHHCSSCC-HHHHHHHHTTSCCCCCCCGGGGSSHHH-HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred hhhhhccCCc-hhhhhhhhhcccCCCCccccccccchH-HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 1110000000 000000000000000000000000111 1133377799999999999999999999998764
No 45
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=2.2e-42 Score=358.13 Aligned_cols=278 Identities=26% Similarity=0.382 Sum_probs=203.4
Q ss_pred hcCCCCCCccccccceEEEEEEe-----CCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL-----REGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. .+.
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~ 85 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGR 85 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECH---HHH
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---CCC
Confidence 46899999999999999999984 2588999999976655666789999999999999999999998753 233
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
..+++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~D 157 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHKE-----RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGD 157 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC
T ss_pred CceEEEEEeCCCCCHHHHHHhccc-----ccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEcc
Confidence 457999999999999999976542 389999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||+++......... .......++..|+|||++.+..++.++||||+|+++|||++|..|+....... .......
T Consensus 158 fg~~~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~---~~~~~~~ 231 (295)
T 3ugc_A 158 FGLTKVLPQDKEFF---KVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEF---MRMIGND 231 (295)
T ss_dssp CCSCC----------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHH---HHHHCTT
T ss_pred CcccccccCCccee---eeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHH---HhhhcCc
Confidence 99998764432111 11223447778999999998899999999999999999999999986532110 0000000
Q ss_pred cccchhhhccHHHHHhhhcc-h-hhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSS-E-SQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
.........+...+... . .......+ .+.+++.+||+.||++|||++|+++.|+++.+..
T Consensus 232 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 232 ---KQGQMIVFHLIELLKNNGRLPRPDGCPD----EIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp ---CCTHHHHHHHHHHHHTTCCCCCCTTCCH----HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred ---cccchhHHHHHHHHhccCcCCCCcCcCH----HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 00000000011110000 0 00001111 1223777999999999999999999999987643
No 46
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.4e-41 Score=359.71 Aligned_cols=252 Identities=25% Similarity=0.359 Sum_probs=198.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCc------chhhHHHHHHHHhcCCCCCceeEEeeeecCCcc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTG------TWKSFFAECEALRNTRHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 526 (767)
.++|++.+.||+|+||.||+|... +|+.||+|++...... ..+.+.+|+.++++++||||+++++++ .
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----~ 85 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVY-----E 85 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEE-----E
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEE-----E
Confidence 468999999999999999999976 4899999999754322 346788999999999999999999995 3
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC----
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM---- 602 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~---- 602 (767)
+...+++||||+++|+|.+++.... .+++.++..++.||+.||+|||++ ||+||||||+||+++.++
T Consensus 86 ~~~~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~ 156 (361)
T 2yab_A 86 NRTDVVLILELVSGGELFDFLAQKE------SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIP 156 (361)
T ss_dssp CSSEEEEEEECCCSCBHHHHHTTCS------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSC
T ss_pred eCCEEEEEEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCcc
Confidence 4567899999999999999997543 399999999999999999999999 999999999999998776
Q ss_pred ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchh
Q 004218 603 TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLV 682 (767)
Q Consensus 603 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~ 682 (767)
.+||+|||+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|..||....... ...
T Consensus 157 ~vkl~DFG~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~-~~~ 228 (361)
T 2yab_A 157 HIKLIDFGLAHEIEDGV-------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLA 228 (361)
T ss_dssp CEEECCCSSCEECCTTC-------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHH
T ss_pred CEEEEecCCceEcCCCC-------ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH-HHH
Confidence 79999999997654321 1234569999999999999999999999999999999999999996532211 011
Q ss_pred hHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 683 KWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
......+.. +.. ....+...+.+++.+||..||++|||+.|++++
T Consensus 229 ~i~~~~~~~------~~~--------------~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h 273 (361)
T 2yab_A 229 NITAVSYDF------DEE--------------FFSQTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (361)
T ss_dssp HHHTTCCCC------CHH--------------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HHHhcCCCC------Cch--------------hccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 111111100 000 001111223347778999999999999999863
No 47
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=5.3e-42 Score=367.22 Aligned_cols=260 Identities=25% Similarity=0.384 Sum_probs=203.8
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC-cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST-GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|++++++++||||+++++++. ..+..
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~~ 187 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCT-----QKQPI 187 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEEC-----SSSSC
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe-----cCCCc
Confidence 467889999999999999999986 689999999864422 33467889999999999999999999964 34457
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||+++|+|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 188 ~lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~ 259 (377)
T 3cbl_A 188 YIVMELVQGGDFLTFLRTEG-----ARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGM 259 (377)
T ss_dssp EEEEECCTTCBHHHHHHHHG-----GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGG
T ss_pred EEEEEcCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCC
Confidence 99999999999999997543 2389999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhcc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFP 690 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~ 690 (767)
++........ .......++..|+|||++.+..++.++|||||||++|||++ |..||...... .....+.....
T Consensus 260 s~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~--~~~~~~~~~~~ 333 (377)
T 3cbl_A 260 SREEADGVYA----ASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ--QTREFVEKGGR 333 (377)
T ss_dssp CEECTTSEEE----CCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH--HHHHHHHTTCC
T ss_pred ceecCCCcee----ecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC
Confidence 9754322111 11112235678999999988889999999999999999998 99998653221 11222222111
Q ss_pred cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 691 KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 691 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
...+..+++. +.+++.+||+.||++|||++|+++.|+++.+.
T Consensus 334 ~~~~~~~~~~----------------------l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 334 LPCPELCPDA----------------------VFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp CCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHH----------------------HHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 1111112221 12266789999999999999999999998764
No 48
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.2e-41 Score=351.63 Aligned_cols=260 Identities=27% Similarity=0.418 Sum_probs=198.2
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC---cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST---GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|+.++++++||||+++++++ ..++
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~-----~~~~ 84 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVD-----EEDD 84 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEE-----ECSS
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEee-----eeCC
Confidence 468999999999999999999975 589999999854432 2346788999999999999999999995 4456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++++|.+++.... ++++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 85 ~~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Df 155 (294)
T 4eqm_A 85 CYYLVMEYIEGPTLSEYIESHG------PLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDF 155 (294)
T ss_dssp EEEEEEECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC
T ss_pred eEEEEEeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeC
Confidence 7799999999999999997654 389999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|+++....... .......||+.|+|||++.+..++.++||||+|+++|+|++|+.||........ .........
T Consensus 156 g~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~-~~~~~~~~~ 229 (294)
T 4eqm_A 156 GIAKALSETSL-----TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSI-AIKHIQDSV 229 (294)
T ss_dssp SSSTTC------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHH-HHHHHSSCC
T ss_pred CCccccccccc-----cccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHhhccC
Confidence 99986543211 112345689999999999999999999999999999999999999965322111 011111111
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCC-CHHHHHHHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRI-DIREALRRLKNAQ 752 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-t~~evl~~L~~~~ 752 (767)
+..... . ...+...+.+++.+||+.||++|| +++++.+.|+.+.
T Consensus 230 ~~~~~~-~------------------~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~ 274 (294)
T 4eqm_A 230 PNVTTD-V------------------RKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVL 274 (294)
T ss_dssp CCHHHH-S------------------CTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSS
T ss_pred CCcchh-c------------------ccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHH
Confidence 110000 0 000111222377789999999999 8898988887654
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.7e-41 Score=368.39 Aligned_cols=368 Identities=19% Similarity=0.238 Sum_probs=248.0
Q ss_pred cEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccC-CccCCCCCCCcEEeec
Q 004218 5 VYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTV-PPGLGNLPFLKMYNIG 83 (767)
Q Consensus 5 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~ 83 (767)
+.++.++++++ .+|. + .++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+.+ +..|..+++|++|+|+
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35667777776 7775 2 256777777777777666777777777777777777776443 4567777777777777
Q ss_pred CccccCCCCCCccccccccCCCCCCEEECcCCcceeecCch--hhhhccccCeEEccCCcccccCCcc-ccCCCCCCEEE
Q 004218 84 FNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPES--IGNLSNVLSKLYMGGNRFYGKIPTS-IGRLRSLTLLN 160 (767)
Q Consensus 84 ~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~ 160 (767)
+|++.. ..+..+.++++|++|++++|++++..|.. +..+++ |++|++++|++++..|.. +.++++|++|+
T Consensus 88 ~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 88 YNQFLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS-LEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp TCTTCE------ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT-CCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCccCc------cChhhccCcccCCEEeCCCCCCCccccCcccccCccc-CCEEECCCCccCccCcccccCCCCcccEEe
Confidence 777653 22445667777777777777777544433 666666 777777777777665655 67777777777
Q ss_pred CcCCcCcccCccccCCC--CCCCEEEccCCccccccCcCc--------ccCCCCceeeCCCCcCCCCCcccccCc---cc
Q 004218 161 LSYNSISGEILTEIGQL--QELQSLDLAGNQISGSIPNTL--------GNLKKLNQIDLSGNELASEIPTSFGNF---QN 227 (767)
Q Consensus 161 l~~n~i~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~ 227 (767)
+++|.+++..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|++++..|..+... ++
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 77777776666666655 567777777777775444332 245677777777777766666555443 66
Q ss_pred cccccccCcccCCC----------CChhhccc--ccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCccc
Q 004218 228 LLSIDLSNNKLNGN----------IPKEILSL--SSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSF 295 (767)
Q Consensus 228 L~~L~l~~n~l~~~----------~~~~~~~l--~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 295 (767)
|+.|++++|.+.+. .+..+..+ +++ +.+++++|.+.+..|..++.+++|+.|+|++|.+++..|..|
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV-KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC-CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCc-eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence 77777776654321 11112211 344 334777777777777777777777777777777776667777
Q ss_pred ccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCC-cccccccc
Q 004218 296 KNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPRE-GIFRHTSM 374 (767)
Q Consensus 296 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~ 374 (767)
..+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|++|++++|++++.++.. ..++++..
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 77777777777777777666677777777777777777777666777777777777777777777766544 34566777
Q ss_pred ccccCCcCccc
Q 004218 375 VHLEGNPKLCL 385 (767)
Q Consensus 375 ~~l~~Np~~c~ 385 (767)
+++.+||+.|.
T Consensus 400 L~l~~N~l~~~ 410 (455)
T 3v47_A 400 IWLHTNPWDCS 410 (455)
T ss_dssp EECCSSCBCCC
T ss_pred EEccCCCcccC
Confidence 77777777664
No 50
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=2.6e-41 Score=351.26 Aligned_cols=269 Identities=24% Similarity=0.337 Sum_probs=199.1
Q ss_pred HhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhc--CCCCCceeEEeeeecCCccccee
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRN--TRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
..++|++.+.||+|+||.||+|++ +++.||||++... ..+.+.+|.+++.. ++||||+++++++... ......
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~-~~~~~~ 80 (301)
T 3q4u_A 6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTS-RHSSTQ 80 (301)
T ss_dssp CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEE-ETTEEE
T ss_pred ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccc-cCCCce
Confidence 357899999999999999999998 4899999998643 34556667777766 7999999999986542 234567
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEeecCCCCCeeeCCCC
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLH--------NDCEVPIVHCDLKPGNILLDEDM 602 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlkp~NIl~~~~~ 602 (767)
.++||||+++|+|.++++.. .+++..++.++.|++.||+||| +. +|+||||||+||+++.++
T Consensus 81 ~~lv~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~ 150 (301)
T 3q4u_A 81 LWLITHYHEMGSLYDYLQLT-------TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNG 150 (301)
T ss_dssp EEEEECCCTTCBHHHHHTTC-------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTS
T ss_pred eEEehhhccCCCHHHHHhhc-------ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCC
Confidence 89999999999999999643 3999999999999999999999 77 999999999999999999
Q ss_pred ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCC------CCCCcccchhhhHHHHHHHhC---------
Q 004218 603 TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE------KPSTAGDVYSFGVMLLEIFTG--------- 667 (767)
Q Consensus 603 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slG~il~el~tg--------- 667 (767)
.+||+|||+++......... ........||+.|+|||++.+. .+++++|||||||++|||++|
T Consensus 151 ~~kl~Dfg~a~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~ 228 (301)
T 3q4u_A 151 QCCIADLGLAVMHSQSTNQL--DVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVED 228 (301)
T ss_dssp CEEECCCTTCEEEETTTTEE--ECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCC
T ss_pred CEEEeeCCCeeecccccccc--cccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccc
Confidence 99999999997654332111 1112334689999999998876 445789999999999999999
Q ss_pred -CCCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 004218 668 -MSPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALR 746 (767)
Q Consensus 668 -~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~ 746 (767)
+.||............................ ....+.....+.+++.+||+.||++|||++|+++
T Consensus 229 ~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~ 295 (301)
T 3q4u_A 229 YKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPN-------------RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK 295 (301)
T ss_dssp CCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCG-------------GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred ccccccccCCCCcchhhhhHHHhccCCCCCCCh-------------hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHH
Confidence 77776544433322221111100000000000 0000011122333777999999999999999999
Q ss_pred HHHHH
Q 004218 747 RLKNA 751 (767)
Q Consensus 747 ~L~~~ 751 (767)
.|+++
T Consensus 296 ~L~~i 300 (301)
T 3q4u_A 296 TLTKI 300 (301)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 99875
No 51
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=4.2e-41 Score=352.88 Aligned_cols=249 Identities=26% Similarity=0.338 Sum_probs=198.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|+.. +|+.||+|+++.. .....+.+.+|+++++.++||||+++++++. ...
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~-----~~~ 78 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQ-----THD 78 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEE-----CSS
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEE-----eCC
Confidence 367899999999999999999976 5899999999653 3345567889999999999999999999954 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.+++||||+++|+|.+++...+ .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 79 ~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DF 149 (337)
T 1o6l_A 79 RLCFVMEYANGGELFFHLSRER------VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDF 149 (337)
T ss_dssp EEEEEEECCTTCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeec
Confidence 7899999999999999997644 389999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|+++..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+....
T Consensus 150 G~a~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~ 221 (337)
T 1o6l_A 150 GLCKEGISD------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--RLFELILMEE 221 (337)
T ss_dssp TTCBCSCCT------TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC
T ss_pred cchhhcccC------CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH--HHHHHHHcCC
Confidence 999753221 11224467999999999999999999999999999999999999999653211 1111111100
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCC-----CHHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRI-----DIREALRR 747 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~ 747 (767)
...+..+++ .+.+++.+||+.||++|| +++|++++
T Consensus 222 -~~~p~~~s~----------------------~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h 261 (337)
T 1o6l_A 222 -IRFPRTLSP----------------------EAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261 (337)
T ss_dssp -CCCCTTSCH----------------------HHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred -CCCCCCCCH----------------------HHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence 001111111 122366789999999999 89999875
No 52
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=7.4e-41 Score=348.82 Aligned_cols=284 Identities=33% Similarity=0.484 Sum_probs=215.4
Q ss_pred CCCccCHHHHHHHhcCCCCC------CccccccceEEEEEEeCCCcEEEEEEeecc----CCcchhhHHHHHHHHhcCCC
Q 004218 441 SPQMISYDELRRATGNFSHE------NLIGSGSFGSVYKGYLREGISVAVKVLDIE----STGTWKSFFAECEALRNTRH 510 (767)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~V~~~~~~~~~~vavK~~~~~----~~~~~~~~~~e~~~l~~l~h 510 (767)
....++++++..++++|... +.||+|+||.||+|... ++.||||++... .....+.+.+|++++++++|
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 89 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN-NTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESS-SCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEEC-CceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence 34678999999999999887 89999999999999974 889999998643 22345678899999999999
Q ss_pred CCceeEEeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 004218 511 RNLVKLITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCD 590 (767)
Q Consensus 511 ~niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D 590 (767)
|||+++++++. .....++||||+++|+|.+++..... ...+++..++.++.|++.||+|||++ +|+|||
T Consensus 90 ~~i~~~~~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~d 158 (307)
T 2nru_A 90 ENLVELLGFSS-----DGDDLCLVYVYMPNGSLLDRLSCLDG---TPPLSWHMRCKIAQGAANGINFLHEN---HHIHRD 158 (307)
T ss_dssp TTBCCEEEEEC-----SSSSCEEEEECCTTCBHHHHHHTGGG---CCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSC
T ss_pred CCeEEEEEEEe-----cCCceEEEEEecCCCcHHHHHHhccC---CCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCC
Confidence 99999999964 34567999999999999999975432 34599999999999999999999999 999999
Q ss_pred CCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCC
Q 004218 591 LKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSP 670 (767)
Q Consensus 591 lkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p 670 (767)
|||+||+++.++.+||+|||.++....... ........||+.|+|||.+.+ .++.++||||||+++|+|++|+.|
T Consensus 159 lkp~Nili~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p 233 (307)
T 2nru_A 159 IKSANILLDEAFTAKISDFGLARASEKFAQ----TVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPA 233 (307)
T ss_dssp CCGGGEEECTTCCEEECCCTTCEECCSCSS----CEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCS
T ss_pred CCHHHEEEcCCCcEEEeecccccccccccc----cccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCC
Confidence 999999999999999999999976433211 111234568999999998765 588999999999999999999999
Q ss_pred CCCcccCCcchhhHhhhh--cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 671 THESFAGEVSLVKWVESN--FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
|........ ...+.... ........++. .+.. ...... ..+.+++.+||+.||++|||++|++++|
T Consensus 234 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~----~~l~~li~~cl~~~p~~Rps~~~l~~~L 301 (307)
T 2nru_A 234 VDEHREPQL-LLDIKEEIEDEEKTIEDYIDK----KMND---ADSTSV----EAMYSVASQCLHEKKNKRPDIKKVQQLL 301 (307)
T ss_dssp BCTTBSSSB-TTHHHHHHHTTSCCHHHHSCS----SCSC---CCHHHH----HHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred cccCcchHH-HHHHHHHhhhhhhhhhhhccc----cccc---cchHHH----HHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence 976433221 11111110 01111111111 0000 011111 2223377799999999999999999999
Q ss_pred HHHHH
Q 004218 749 KNAQK 753 (767)
Q Consensus 749 ~~~~~ 753 (767)
+++..
T Consensus 302 ~~l~~ 306 (307)
T 2nru_A 302 QEMTA 306 (307)
T ss_dssp HHHC-
T ss_pred HHHhc
Confidence 98754
No 53
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=1.8e-41 Score=361.89 Aligned_cols=262 Identities=26% Similarity=0.412 Sum_probs=193.3
Q ss_pred hcCCCCCCccccccceEEEEEEeC----CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR----EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
.++|++.+.||+|+||.||+|++. ++..||||+++... ....+.+.+|++++++++||||+++++++. ..
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~ 118 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVT-----KS 118 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----SS
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----eC
Confidence 358999999999999999999865 47789999996543 234567899999999999999999999964 34
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
...++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 119 ~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~D 190 (373)
T 2qol_A 119 KPVMIVTEYMENGSLDSFLRKHD-----AQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSD 190 (373)
T ss_dssp SSCEEEEECCTTCBHHHHHHTTT-----TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECC
T ss_pred CceEEEEeCCCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECc
Confidence 56799999999999999997643 3499999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~ 687 (767)
||+++......... .......+++.|+|||++.+..++.++||||||+++|||++ |+.||...... .....+..
T Consensus 191 fg~a~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~--~~~~~i~~ 265 (373)
T 2qol_A 191 FGLGRVLEDDPEAA---YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ--DVIKAVDE 265 (373)
T ss_dssp C-------------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH--HHHHHHHT
T ss_pred CccccccccCCccc---eeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHc
Confidence 99998764432111 11122335778999999998899999999999999999998 99998653221 11111111
Q ss_pred hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 688 NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
.........+... +.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus 266 ~~~~~~~~~~~~~----------------------l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~ 311 (373)
T 2qol_A 266 GYRLPPPMDCPAA----------------------LYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP 311 (373)
T ss_dssp TEECCCCTTCBHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred CCCCCCCccccHH----------------------HHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence 1111111111111 222777899999999999999999999987644
No 54
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=361.53 Aligned_cols=267 Identities=25% Similarity=0.368 Sum_probs=207.0
Q ss_pred hcCCCCCCccccccceEEEEEEeC------CCcEEEEEEeecc-CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR------EGISVAVKVLDIE-STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 526 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++... .......+.+|+.++++++||||+++++++.
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~----- 144 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----- 144 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEe-----
Confidence 367899999999999999999953 3678999998643 2334557889999999999999999999964
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC---
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKN-EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM--- 602 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~--- 602 (767)
.....++||||+++|+|.+++...+.. .....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++
T Consensus 145 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~ 221 (367)
T 3l9p_A 145 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGR 221 (367)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTC
T ss_pred cCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCc
Confidence 345569999999999999999865432 2234599999999999999999999999 999999999999999555
Q ss_pred ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcch
Q 004218 603 TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSL 681 (767)
Q Consensus 603 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~ 681 (767)
.+||+|||+++......... ......||+.|+|||++.+..++.++|||||||++|||++ |..||..... ...
T Consensus 222 ~~kL~DFG~a~~~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~--~~~ 295 (367)
T 3l9p_A 222 VAKIGDFGMARDIYRAGYYR----KGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEV 295 (367)
T ss_dssp CEEECCCHHHHHHHHHSSCT----TCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHH
T ss_pred eEEECCCccccccccccccc----cCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHH
Confidence 59999999998765442221 1234557899999999988899999999999999999998 9999865322 112
Q ss_pred hhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 682 VKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
...+...........+... +.+++.+||+.||++|||++|++++|+.+.+...
T Consensus 296 ~~~i~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~~ 348 (367)
T 3l9p_A 296 LEFVTSGGRMDPPKNCPGP----------------------VYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPD 348 (367)
T ss_dssp HHHHHTTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCHH
T ss_pred HHHHHcCCCCCCCccCCHH----------------------HHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhChh
Confidence 2222211111111111111 2226778999999999999999999999876554
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-40 Score=367.52 Aligned_cols=357 Identities=19% Similarity=0.197 Sum_probs=311.8
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccC-CccccCCCCCCEEEcccccCcccCCccCCCCCCCcEE
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKI-PGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMY 80 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 80 (767)
++|++|||++|+++ .++...+.++++|++|++++|.+.+.+ +..|.++++|++|+|++|.+++..|..|+.+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 57999999999999 554444557999999999999997544 6789999999999999999998889999999999999
Q ss_pred eecCccccCCCCCCccccc--cccCCCCCCEEECcCCcceeecCch-hhhhccccCeEEccCCcccccCCccccCC--CC
Q 004218 81 NIGFNKIVGSGDEGLSFIT--SLTNSTRLNFLAFDGNQFEGEIPES-IGNLSNVLSKLYMGGNRFYGKIPTSIGRL--RS 155 (767)
Q Consensus 81 ~l~~n~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~~L~~L~l~~n~i~~~~~~~l~~l--~~ 155 (767)
+|++|++.+ ..+. .+.++++|++|++++|++++..|.. +..+++ |++|++++|++++..+..+..+ .+
T Consensus 109 ~L~~n~l~~------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 109 TLTQCNLDG------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp ECTTSCCBT------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred eCCCCCCCc------cccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCcccccChhhhhcccccc
Confidence 999999864 2233 3888999999999999999887876 788888 9999999999998888888876 79
Q ss_pred CCEEECcCCcCcccCccc--------cCCCCCCCEEEccCCccccccCcCcccC---CCCceeeCCCCcCCCC-------
Q 004218 156 LTLLNLSYNSISGEILTE--------IGQLQELQSLDLAGNQISGSIPNTLGNL---KKLNQIDLSGNELASE------- 217 (767)
Q Consensus 156 L~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~N~l~~~------- 217 (767)
|+.|++++|.+.+..+.. +..+++|++|++++|++.+..|..+... ++|+.|++++|.+.+.
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 999999999999655443 3467899999999999998888777654 8999999999866532
Q ss_pred ---CcccccC--ccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCC
Q 004218 218 ---IPTSFGN--FQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLP 292 (767)
Q Consensus 218 ---~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 292 (767)
.+..+.. .++|+.|++++|.+.+..|..+..+++|.. +++++|.+++..|..|+.+++|+.|+|++|.+++..|
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ-LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE-EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred ccCcccccccccccCceEEEecCccccccchhhcccCCCCCE-EECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 1222332 368999999999999888999999999954 5999999999899999999999999999999998889
Q ss_pred cccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCCc
Q 004218 293 NSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREG 367 (767)
Q Consensus 293 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 367 (767)
..|..+++|+.|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++.+|...
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 999999999999999999998889999999999999999999998777788999999999999999999888643
No 56
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=3.8e-41 Score=346.56 Aligned_cols=259 Identities=24% Similarity=0.407 Sum_probs=203.1
Q ss_pred HhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
..++|++.+.||+|+||.||+|.+.++..||+|++.... ...+++.+|++++++++||||+++++++. .....+
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 95 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCT-----KQRPIF 95 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSEE
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEe-----cCCCeE
Confidence 346888999999999999999999988899999997443 33467899999999999999999999964 455679
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccch
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLA 612 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 612 (767)
+||||+++|+|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+
T Consensus 96 lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~ 167 (283)
T 3gen_A 96 IITEYMANGCLLNYLREMRH-----RFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLS 167 (283)
T ss_dssp EEECCCTTCBHHHHHHCGGG-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGG
T ss_pred EEEeccCCCcHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEcccccc
Confidence 99999999999999976432 399999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhccc
Q 004218 613 RSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPK 691 (767)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~ 691 (767)
+....... .......+|+.|+|||++.+..++.++||||+|+++|+|++ |+.||...... .....+......
T Consensus 168 ~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~--~~~~~~~~~~~~ 240 (283)
T 3gen_A 168 RYVLDDEY-----TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ETAEHIAQGLRL 240 (283)
T ss_dssp GGBCCHHH-----HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHTTCCC
T ss_pred cccccccc-----ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh--HHHHHHhcccCC
Confidence 86533211 11123346788999999998889999999999999999998 99998653221 111111111111
Q ss_pred chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 692 NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 692 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
......++. +.+++.+||+.||++|||++|++++|+++.+.
T Consensus 241 ~~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 241 YRPHLASEK----------------------VYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp CCCTTCCHH----------------------HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCcCCHH----------------------HHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 111222211 22267789999999999999999999988754
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.5e-41 Score=383.70 Aligned_cols=370 Identities=21% Similarity=0.189 Sum_probs=235.9
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEe
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYN 81 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 81 (767)
++|++|+|++|+++ .++...+.++++|++|++++|.+.+..|.+|.++++|++|+|++|.+++..|..|+.+++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 35667777777776 45554455577777777777777766666677777777777777777655566677777777777
Q ss_pred ecCccccCCCCCCccccccccCCCCCCEEECcCCccee-ecCchhhhhccccCeEEccCCcccccCCccccCCC------
Q 004218 82 IGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEG-EIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLR------ 154 (767)
Q Consensus 82 l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~------ 154 (767)
+++|.+...+. ..+.++++|++|++++|++++ .+|..++++++ |++|++++|++++..+..|..++
T Consensus 111 L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 111 AVETKLASLES------FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN-LVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp CTTSCCCCSSS------SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT-CCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCccccccc------cccCCCCCCCEEeCCCCcccceechHhHhhcCC-CCEEEccCCcceecChhhhhhhhcccccc
Confidence 77776654321 234555555555555555553 34555555555 55555555555544444333322
Q ss_pred ---------------------CCCEEECcCCcCcc---------------------------------------------
Q 004218 155 ---------------------SLTLLNLSYNSISG--------------------------------------------- 168 (767)
Q Consensus 155 ---------------------~L~~L~l~~n~i~~--------------------------------------------- 168 (767)
+|++|++++|.+.+
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 44444444443320
Q ss_pred -----------------------------------cCccccCCCCCCCEEEccCCccccccCc-----------------
Q 004218 169 -----------------------------------EILTEIGQLQELQSLDLAGNQISGSIPN----------------- 196 (767)
Q Consensus 169 -----------------------------------~~~~~~~~l~~L~~L~L~~n~i~~~~~~----------------- 196 (767)
..+ .+..+++|++|++++|.+. .+|.
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGS 341 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSC
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCc
Confidence 001 2333445555555555552 3332
Q ss_pred ---CcccCCCCceeeCCCCcCCCC--CcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCc-hh
Q 004218 197 ---TLGNLKKLNQIDLSGNELASE--IPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLP-EE 270 (767)
Q Consensus 197 ---~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~-~~ 270 (767)
.+..+++|++|++++|++++. .+..+..+++|++|++++|.+. .+|..+..+++|. .+++++|.+.+..+ ..
T Consensus 342 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQ-HLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCC-EEECTTSEEESTTTTTT
T ss_pred cchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCC-eeECCCCccCCccChhh
Confidence 223444555555555555433 2455566666666666666666 3556666777773 34777777777666 57
Q ss_pred hcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccC-CCCchhhccCCceEEEcCCcccCCCCCccccccccC
Q 004218 271 IGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSG-PIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRAL 349 (767)
Q Consensus 271 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (767)
+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++ ..|..+..+++|+.|+|++|++++..|..+..+++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 7788888888888888887777788888888888888888876 367778888888888888888887777778888888
Q ss_pred ceEeccCCcCcCcCCCC-ccccccccccccCCcCc
Q 004218 350 RSLNLTFNNLEGVVPRE-GIFRHTSMVHLEGNPKL 383 (767)
Q Consensus 350 ~~L~l~~N~l~~~~~~~-~~~~~~~~~~l~~Np~~ 383 (767)
+.|++++|++++.+|.. ..++++..+++.+|...
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 88888888888775544 44667777888887644
No 58
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.2e-41 Score=388.19 Aligned_cols=365 Identities=21% Similarity=0.250 Sum_probs=312.9
Q ss_pred CCCccEEeCCCCeeee-----------------cCCCccc-cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccccc
Q 004218 1 MTSLVYLGLASNQLWG-----------------EIPYDVG-DKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNL 62 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~-----------------~ip~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 62 (767)
|++|++|+|++|++++ .+|..+. ..+++|++|+|++|.+.+.+|..|+++++|++|+|++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5789999999999996 3999883 459999999999999999999999999999999999998
Q ss_pred -Ccc-cCCccCCCC-------CCCcEEeecCccccCCCCCCccccc--cccCCCCCCEEECcCCcceeecCchhhhhccc
Q 004218 63 -LEG-TVPPGLGNL-------PFLKMYNIGFNKIVGSGDEGLSFIT--SLTNSTRLNFLAFDGNQFEGEIPESIGNLSNV 131 (767)
Q Consensus 63 -i~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~ 131 (767)
+++ .+|..++.+ ++|++|+|++|++. .++. .+.++++|+.|+|++|+++ .+| .+..+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~- 596 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-------EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK- 596 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE-
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-------ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc-
Confidence 987 788755554 59999999999997 4555 7899999999999999999 888 8899988
Q ss_pred cCeEEccCCcccccCCccccCCCC-CCEEECcCCcCcccCccccCCCCC--CCEEEccCCccccccCcCc---c--cCCC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRS-LTLLNLSYNSISGEILTEIGQLQE--LQSLDLAGNQISGSIPNTL---G--NLKK 203 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~-L~~L~l~~n~i~~~~~~~~~~l~~--L~~L~L~~n~i~~~~~~~~---~--~l~~ 203 (767)
|++|+|++|+++ .+|..+..+++ |++|+|++|.++ .+|..+..++. |+.|+|++|++.+.+|... . .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999999 88999999999 999999999999 77888877755 9999999999997666432 2 3458
Q ss_pred CceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccc--------cccceeecccccCCCCCchhhc--C
Q 004218 204 LNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLS--------SLTTIVNLSKNFLDGTLPEEIG--M 273 (767)
Q Consensus 204 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------~l~~~l~l~~n~l~~~~~~~~~--~ 273 (767)
|+.|+|++|+++...+..+..+++|+.|+|++|+++ .+|..+.... +| +.|+|++|+++ .+|..+. .
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTTT
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhcc
Confidence 999999999999654445568999999999999999 6776655433 66 45599999999 7788886 9
Q ss_pred CCceeEEEccCCCCCCCCCcccccCcccceeeccC------ccccCCCCchhhccCCceEEEcCCcccCCCCCccccccc
Q 004218 274 LGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMAN------NKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLR 347 (767)
Q Consensus 274 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (767)
+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+.|+|++|++ +.+|..+. +
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~ 827 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--P 827 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--S
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--C
Confidence 9999999999999997 788999999999999976 788889999999999999999999999 58888766 6
Q ss_pred cCceEeccCCcCcCcCCCCc-cccccccccccCCcCcc
Q 004218 348 ALRSLNLTFNNLEGVVPREG-IFRHTSMVHLEGNPKLC 384 (767)
Q Consensus 348 ~L~~L~l~~N~l~~~~~~~~-~~~~~~~~~l~~Np~~c 384 (767)
+|+.|+|++|++..+.+... .........+..|++.|
T Consensus 828 ~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp SSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 99999999999988765431 12234456677777655
No 59
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=2.2e-41 Score=345.35 Aligned_cols=257 Identities=27% Similarity=0.405 Sum_probs=203.7
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLAL 533 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 533 (767)
.++|++.+.||+|+||.||+|.++++..||+|++.... ...+++.+|++++++++||||+++++++. .....++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~l 80 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCS-----KEYPIYI 80 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEEC-----SSSSEEE
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCceEE
Confidence 46899999999999999999999988899999996443 34467899999999999999999999963 4556799
Q ss_pred EEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 534 VYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 534 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.+.
T Consensus 81 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~ 152 (268)
T 3sxs_A 81 VTEYISNGCLLNYLRSHG-----KGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTR 152 (268)
T ss_dssp EEECCTTCBHHHHHHHHG-----GGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEE
T ss_pred EEEccCCCcHHHHHHHcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccce
Confidence 999999999999997643 2389999999999999999999999 99999999999999999999999999997
Q ss_pred hhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhcccc
Q 004218 614 SLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPKN 692 (767)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~ 692 (767)
....... .......+|+.|+|||.+.+..++.++||||+|+++|+|++ |+.||....... ............
T Consensus 153 ~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~~~~~~~~~ 225 (268)
T 3sxs_A 153 YVLDDQY-----VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSE--VVLKVSQGHRLY 225 (268)
T ss_dssp ECCTTCE-----EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHHHHTTCCCC
T ss_pred ecchhhh-----hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHH--HHHHHHcCCCCC
Confidence 6533211 11123346778999999988889999999999999999999 999986532211 111111111111
Q ss_pred hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHH
Q 004218 693 AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQK 753 (767)
Q Consensus 693 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 753 (767)
.+...++. +.+++.+||+.||++|||++|++++|+.+++
T Consensus 226 ~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 226 RPHLASDT----------------------IYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp CCTTSCHH----------------------HHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred CCCcChHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 11111211 2226678999999999999999999987643
No 60
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-41 Score=349.49 Aligned_cols=259 Identities=27% Similarity=0.400 Sum_probs=197.9
Q ss_pred cCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEEE
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLALV 534 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv 534 (767)
++|++.+.||+|+||.||+|.+. ++.||+|++.. ....+.+.+|++++++++||||+++++++.. ..++|
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~~lv 77 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIES--ESERKAFIVELRQLSRVNHPNIVKLYGACLN-------PVCLV 77 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSS--TTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT-------TTEEE
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecC--hhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-------CcEEE
Confidence 57889999999999999999986 78999999853 3455788999999999999999999998642 25899
Q ss_pred EeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc-eEEccccchh
Q 004218 535 YEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT-AKVGDFGLAR 613 (767)
Q Consensus 535 ~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~-~kl~Dfg~a~ 613 (767)
|||+++|+|.+++..... ...+++..++.++.|+++||+|||+....+|+||||||+||+++.++. +||+|||.+.
T Consensus 78 ~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~ 154 (307)
T 2eva_A 78 MEYAEGGSLYNVLHGAEP---LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC 154 (307)
T ss_dssp EECCTTCBHHHHHHCSSS---EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--
T ss_pred EEcCCCCCHHHHHhccCC---CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccc
Confidence 999999999999976542 123789999999999999999999932239999999999999998886 7999999997
Q ss_pred hhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcccch
Q 004218 614 SLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPKNA 693 (767)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 693 (767)
..... .....||+.|+|||++.+..++.++||||||+++|||++|+.||......................
T Consensus 155 ~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 225 (307)
T 2eva_A 155 DIQTH---------MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPL 225 (307)
T ss_dssp -------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCCC
T ss_pred ccccc---------cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCCc
Confidence 55322 123358999999999999999999999999999999999999997543222111111111111111
Q ss_pred hhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 004218 694 QQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLK 757 (767)
Q Consensus 694 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 757 (767)
...+++. +.+++.+||+.||++|||++|+++.|+.+.+.+..
T Consensus 226 ~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 267 (307)
T 2eva_A 226 IKNLPKP----------------------IESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG 267 (307)
T ss_dssp BTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred ccccCHH----------------------HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence 1111111 22367789999999999999999999998766543
No 61
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.6e-41 Score=350.52 Aligned_cols=282 Identities=22% Similarity=0.275 Sum_probs=206.8
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+.. ++.||||++.... ....+.+.+|++++++++||||+++++++.. ......
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~~ 84 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE---TTTRHK 84 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---TTTCCE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeec---CCCceE
Confidence 3679999999999999999999765 8999999996433 3445678899999999999999999998753 234467
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee----CCCCceEEc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL----DEDMTAKVG 607 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~----~~~~~~kl~ 607 (767)
++||||+++|+|.+++..... ...+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+
T Consensus 85 ~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~ 158 (319)
T 4euu_A 85 VLIMEFCPCGSLYTVLEEPSN---AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLT 158 (319)
T ss_dssp EEEEECCTTCBHHHHHHSGGG---TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEc
Confidence 999999999999999986543 23489999999999999999999999 99999999999999 788889999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccC--------CCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL--------GEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV 679 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~ 679 (767)
|||+++...... ......||..|+|||++. +..++.++||||+||++|||++|+.||........
T Consensus 159 Dfg~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~ 231 (319)
T 4euu_A 159 DFGAARELEDDE-------QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRR 231 (319)
T ss_dssp CCTTCEECCTTC-------CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGG
T ss_pred cCCCceecCCCC-------ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccch
Confidence 999997654321 112346899999999875 56789999999999999999999999964322211
Q ss_pred --chhhHhhhhcccchhhhccHHHHHhhh--cchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHH
Q 004218 680 --SLVKWVESNFPKNAQQVLDRELRQLMM--SSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNA 751 (767)
Q Consensus 680 --~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~ 751 (767)
.....+....|......+.......+. ........+.+.+...+.+++.+||+.||++|||++|++++..+.
T Consensus 232 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 232 NKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp CHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 111111111111100000000000000 000000112233344455577899999999999999999998754
No 62
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=7e-41 Score=351.17 Aligned_cols=252 Identities=24% Similarity=0.332 Sum_probs=197.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCc------chhhHHHHHHHHhcCCCCCceeEEeeeecCCcc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTG------TWKSFFAECEALRNTRHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 526 (767)
.++|++.+.||+|+||.||+|... +|+.||+|++...... ..+.+.+|+++++.++||||+++++++.
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----- 84 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYE----- 84 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEE-----
Confidence 357999999999999999999976 4899999998654321 3567889999999999999999999954
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC----
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM---- 602 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~---- 602 (767)
.....++||||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 85 ~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~ 155 (326)
T 2y0a_A 85 NKTDVILILELVAGGELFDFLAEKE------SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKP 155 (326)
T ss_dssp CSSEEEEEEECCCSCBHHHHHTTSS------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSC
T ss_pred eCCEEEEEEEcCCCCCHHHHHHhcC------CcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCC
Confidence 4566799999999999999997543 399999999999999999999999 999999999999999887
Q ss_pred ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchh
Q 004218 603 TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLV 682 (767)
Q Consensus 603 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~ 682 (767)
.+||+|||+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||....... ...
T Consensus 156 ~~kl~Dfg~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~ 227 (326)
T 2y0a_A 156 RIKIIDFGLAHKIDFGN-------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLA 227 (326)
T ss_dssp CEEECCCTTCEECCTTS-------CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHH
T ss_pred CEEEEECCCCeECCCCC-------ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH-HHH
Confidence 89999999997653221 1233568999999999999999999999999999999999999996532211 000
Q ss_pred hHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 683 KWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
......+... . .........+.+++.+||+.||++|||+.|++++
T Consensus 228 ~~~~~~~~~~------~--------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 272 (326)
T 2y0a_A 228 NVSAVNYEFE------D--------------EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272 (326)
T ss_dssp HHHHTCCCCC------H--------------HHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred HHHhcCCCcC------c--------------cccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 1101000000 0 0000011122337778999999999999999974
No 63
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=8.4e-41 Score=355.57 Aligned_cols=249 Identities=25% Similarity=0.323 Sum_probs=195.8
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.... ++.||+|++... .....+.+.+|+++++.++||||+++++++. +..
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~-----~~~ 88 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQ-----DEE 88 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence 3679999999999999999999764 889999998643 2344577889999999999999999999954 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.+++||||+++|+|.+++.... .+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 89 ~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DF 159 (384)
T 4fr4_A 89 DMFMVVDLLLGGDLRYHLQQNV------HFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDF 159 (384)
T ss_dssp EEEEEECCCTTEEHHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred EEEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEecc
Confidence 7899999999999999997643 399999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCC---CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc-chhhHh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG---EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV-SLVKWV 685 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~-~~~~~~ 685 (767)
|+++..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||........ ......
T Consensus 160 G~a~~~~~~-------~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~ 232 (384)
T 4fr4_A 160 NIAAMLPRE-------TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTF 232 (384)
T ss_dssp TTCEECCTT-------CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHH
T ss_pred ceeeeccCC-------CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHH
Confidence 999765322 12244679999999999864 4589999999999999999999999965332221 111111
Q ss_pred hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCC-HHHHHH
Q 004218 686 ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRID-IREALR 746 (767)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt-~~evl~ 746 (767)
..... ..+..+++ .+.+++.+||+.||++||+ ++++.+
T Consensus 233 ~~~~~-~~p~~~s~----------------------~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 233 ETTVV-TYPSAWSQ----------------------EMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp HHCCC-CCCTTSCH----------------------HHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred hhccc-CCCCcCCH----------------------HHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 11111 11111111 1223677899999999998 666654
No 64
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.4e-41 Score=350.79 Aligned_cols=253 Identities=22% Similarity=0.306 Sum_probs=198.8
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|.+... ......+.+|+++++.++||||+++++++. +...++
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~ 77 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFE-----SMEELV 77 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEe-----cCCEEE
Confidence 468999999999999999999976 4889999998643 334566889999999999999999999964 455789
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC--CCceEEcccc
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE--DMTAKVGDFG 610 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg 610 (767)
+||||+++|+|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||
T Consensus 78 lv~e~~~g~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg 149 (321)
T 1tki_A 78 MIFEFISGLDIFERINTSA-----FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFG 149 (321)
T ss_dssp EEECCCCCCBHHHHHTSSS-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCT
T ss_pred EEEEeCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECC
Confidence 9999999999999997543 2489999999999999999999999 9999999999999987 7899999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFP 690 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 690 (767)
+++..... .......||+.|+|||++.+..++.++||||+|+++|+|++|..||....... .........+.
T Consensus 150 ~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~ 221 (321)
T 1tki_A 150 QARQLKPG-------DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ-IIENIMNAEYT 221 (321)
T ss_dssp TCEECCTT-------CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHTCCC
T ss_pred CCeECCCC-------CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH-HHHHHHcCCCC
Confidence 99765322 11234568999999999998889999999999999999999999996532211 11111111111
Q ss_pred cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 691 KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 691 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
... .. ...+...+.+++.+||..||++|||+.|++++-
T Consensus 222 ~~~----------------~~----~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp 259 (321)
T 1tki_A 222 FDE----------------EA----FKEISIEAMDFVDRLLVKERKSRMTASEALQHP 259 (321)
T ss_dssp CCH----------------HH----HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred CCh----------------hh----hccCCHHHHHHHHHHcCCChhHCcCHHHHhcCh
Confidence 000 00 000111223377799999999999999999853
No 65
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=4.6e-41 Score=353.00 Aligned_cols=274 Identities=23% Similarity=0.359 Sum_probs=194.8
Q ss_pred HHhcCCCCCCccccccceEEEEEEeCC-C---cEEEEEEeecc--CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLRE-G---ISVAVKVLDIE--STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF 525 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~~-~---~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 525 (767)
...++|++.+.||+|+||.||+|.+.. + ..||||++... .....+.+.+|++++++++||||+++++++.....
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 345689999999999999999999764 3 37999998654 34456789999999999999999999999764322
Q ss_pred c-cceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCce
Q 004218 526 K-NMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTA 604 (767)
Q Consensus 526 ~-~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 604 (767)
. .....++||||+++|+|.+++...........+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~ 176 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTV 176 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCE
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCE
Confidence 1 1123489999999999999997655433334599999999999999999999999 99999999999999999999
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhh
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVK 683 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~ 683 (767)
||+|||.++......... ......+++.|+|||.+.+..++.++||||+||++|+|++ |+.||...... ....
T Consensus 177 kl~Dfg~a~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~ 250 (323)
T 3qup_A 177 CVADFGLSRKIYSGDYYR----QGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA--EIYN 250 (323)
T ss_dssp EECCCCC---------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHH
T ss_pred EEeecccccccccccccc----ccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChH--HHHH
Confidence 999999998664432111 1123446788999999998899999999999999999999 89998654322 1111
Q ss_pred HhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 684 WVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
.+...........+.+. +.+++.+||+.||++|||+.|+++.|+++.....
T Consensus 251 ~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~ 301 (323)
T 3qup_A 251 YLIGGNRLKQPPECMEE----------------------VYDLMYQCWSADPKQRPSFTCLRMELENILGHLS 301 (323)
T ss_dssp HHHTTCCCCCCTTCCHH----------------------HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred HHhcCCCCCCCCccCHH----------------------HHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhh
Confidence 11111111111111111 2237778999999999999999999999876543
No 66
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=1.8e-41 Score=361.95 Aligned_cols=277 Identities=24% Similarity=0.355 Sum_probs=212.6
Q ss_pred cCHHHHHHHhcCCCCCCccccccceEEEEEEeC------CCcEEEEEEeeccCC-cchhhHHHHHHHHhcC-CCCCceeE
Q 004218 445 ISYDELRRATGNFSHENLIGSGSFGSVYKGYLR------EGISVAVKVLDIEST-GTWKSFFAECEALRNT-RHRNLVKL 516 (767)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~ 516 (767)
+...+.....++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|+++++++ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 344555667789999999999999999999842 367899999965432 3346789999999999 79999999
Q ss_pred EeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCC------------------------------------------
Q 004218 517 ITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNE------------------------------------------ 554 (767)
Q Consensus 517 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~------------------------------------------ 554 (767)
++++.. .+...++||||+++|+|.+++.......
T Consensus 92 ~~~~~~----~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (359)
T 3vhe_A 92 LGACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGF 167 (359)
T ss_dssp EEEECS----TTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------
T ss_pred eeeeec----CCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccc
Confidence 999753 3345799999999999999998654210
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchhhhh
Q 004218 555 ------------------HGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLARSLL 616 (767)
Q Consensus 555 ------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~ 616 (767)
....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 244 (359)
T 3vhe_A 168 VEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIY 244 (359)
T ss_dssp ----------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTT
T ss_pred ccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeec
Confidence 012289999999999999999999999 99999999999999999999999999998653
Q ss_pred hhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhcccchhh
Q 004218 617 ERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPKNAQQ 695 (767)
Q Consensus 617 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (767)
.... ........||+.|+|||++.+..++.++||||||+++|||++ |+.||........ ....+........+.
T Consensus 245 ~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~ 319 (359)
T 3vhe_A 245 KDPD----YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-FCRRLKEGTRMRAPD 319 (359)
T ss_dssp SCTT----CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-HHHHHHHTCCCCCCT
T ss_pred cccc----chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH-HHHHHHcCCCCCCCC
Confidence 3211 112234568899999999998899999999999999999998 9999965432221 112222211111222
Q ss_pred hccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 696 VLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 696 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
.+.+.+ .+++.+||+.||++|||++|++++|+.+....
T Consensus 320 ~~~~~l----------------------~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 357 (359)
T 3vhe_A 320 YTTPEM----------------------YQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 357 (359)
T ss_dssp TCCHHH----------------------HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHH----------------------HHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence 222221 22667899999999999999999999987653
No 67
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=6.3e-41 Score=357.68 Aligned_cols=200 Identities=28% Similarity=0.382 Sum_probs=172.5
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeecc---CCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCcccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIE---STGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~ 528 (767)
.++|++.+.||+|+||.||+|+.+. ++.||+|+++.. .....+.+.+|..+++++ +||||+++++++ ...
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~~~ 125 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----QTE 125 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEE-----ECS
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEE-----EEC
Confidence 4679999999999999999999764 889999999754 233445688999999876 899999999985 455
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
..+++||||+++|+|.+++...+. +++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 126 ~~~~lV~E~~~gg~L~~~l~~~~~------l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~D 196 (396)
T 4dc2_A 126 SRLFFVIEYVNGGDLMFHMQRQRK------LPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTD 196 (396)
T ss_dssp SEEEEEEECCTTCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECC
T ss_pred CEEEEEEEcCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEee
Confidence 678999999999999999976543 99999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCC
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHE 673 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~ 673 (767)
||+++..... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||..
T Consensus 197 FGla~~~~~~------~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~ 255 (396)
T 4dc2_A 197 YGMCKEGLRP------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI 255 (396)
T ss_dssp CTTCBCCCCT------TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTT
T ss_pred cceeeecccC------CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcc
Confidence 9999753211 1123456799999999999999999999999999999999999999964
No 68
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=5.5e-41 Score=349.66 Aligned_cols=274 Identities=24% Similarity=0.327 Sum_probs=197.9
Q ss_pred HhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
..++|++.+.||+|+||.||+|.+.+++.||+|++.... ....+.+.+|++++++++||||+++++++. ....
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~ 93 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIH-----SERC 93 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----CSSC
T ss_pred hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEc-----cCCE
Confidence 357899999999999999999999889999999986442 233467889999999999999999999954 4567
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||+++ +|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 94 ~~lv~e~~~~-~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg 164 (311)
T 3niz_A 94 LTLVFEFMEK-DLKKVLDENK-----TGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFG 164 (311)
T ss_dssp EEEEEECCSE-EHHHHHHTCT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEcCCCC-CHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCc
Confidence 7999999985 8888886543 3489999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh---
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE--- 686 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~--- 686 (767)
+++...... .......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||........ ......
T Consensus 165 ~a~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~ 237 (311)
T 3niz_A 165 LARAFGIPV------RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQ-LPKIFSILG 237 (311)
T ss_dssp TCEETTSCC------C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTH-HHHHHHHHC
T ss_pred CceecCCCc------ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHHC
Confidence 997653221 11233468999999999876 5689999999999999999999999976443322 111111
Q ss_pred hhcccchhhhccH-HHHHhh-hc-chhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 687 SNFPKNAQQVLDR-ELRQLM-MS-SESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 687 ~~~~~~~~~~~~~-~l~~~~-~~-~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
...+.......+. ...... .. .........+.+...+.+++.+||+.||++|||++|++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 301 (311)
T 3niz_A 238 TPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH 301 (311)
T ss_dssp CCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred CCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 1111111111000 000000 00 0000000001111122337779999999999999999874
No 69
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=2.2e-41 Score=358.73 Aligned_cols=256 Identities=24% Similarity=0.305 Sum_probs=197.5
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc-----CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE-----STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
.++|++.+.||+|+||.||+|.++ +++.||||++... .....+.+.+|+++++.++||||+++++++. .
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~ 97 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYS-----S 97 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----E
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEE-----e
Confidence 457999999999999999999975 5899999998542 1224577899999999999999999999954 4
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc---e
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT---A 604 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~---~ 604 (767)
.+.+++||||+++|+|.+++...... +..+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +
T Consensus 98 ~~~~~lv~e~~~g~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~v 172 (351)
T 3c0i_A 98 DGMLYMVFEFMDGADLCFEIVKRADA--GFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPV 172 (351)
T ss_dssp TTEEEEEEECCSSCBHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCE
T ss_pred CCEEEEEEeCCCCCCHHHHHHHhccc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcE
Confidence 56789999999999999888654321 23489999999999999999999999 9999999999999986554 9
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhH
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKW 684 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~ 684 (767)
||+|||+++...... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||..... ......
T Consensus 173 kl~Dfg~a~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~i 244 (351)
T 3c0i_A 173 KLGGFGVAIQLGESG------LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE--RLFEGI 244 (351)
T ss_dssp EECCCTTCEECCTTS------CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH--HHHHHH
T ss_pred EEecCcceeEecCCC------eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH--HHHHHH
Confidence 999999997654321 112345699999999999999999999999999999999999999965321 011111
Q ss_pred hhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 685 VESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
....+.... ..... +...+.+++.+||+.||++|||+.|++++
T Consensus 245 ~~~~~~~~~----------------~~~~~----~s~~~~~li~~~L~~dP~~R~s~~e~l~h 287 (351)
T 3c0i_A 245 IKGKYKMNP----------------RQWSH----ISESAKDLVRRMLMLDPAERITVYEALNH 287 (351)
T ss_dssp HHTCCCCCH----------------HHHTT----SCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HcCCCCCCc----------------ccccc----CCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 111111100 00001 11122337778999999999999999874
No 70
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=5.1e-41 Score=364.81 Aligned_cols=252 Identities=23% Similarity=0.311 Sum_probs=197.9
Q ss_pred HHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC--cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST--GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
...++|++.+.||+|+||.||+|.+. +|+.||+|++..... ...+.+.+|+++++.++||||+++++++ .+.
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----~~~ 82 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSI-----SEE 82 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEE-----ECS
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEE-----EEC
Confidence 34678999999999999999999975 589999999865432 2356788999999999999999999995 455
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeC---CCCceE
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLD---EDMTAK 605 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~---~~~~~k 605 (767)
+..++||||+++|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++ .++.+|
T Consensus 83 ~~~~lv~E~~~gg~L~~~i~~~~------~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vk 153 (444)
T 3soa_A 83 GHHYLIFDLVTGGELFEDIVARE------YYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVK 153 (444)
T ss_dssp SEEEEEECCCBCCBHHHHHHHCS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEE
T ss_pred CEEEEEEEeCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEE
Confidence 67799999999999999987643 399999999999999999999999 999999999999998 467899
Q ss_pred EccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh
Q 004218 606 VGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV 685 (767)
Q Consensus 606 l~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~ 685 (767)
|+|||+++...... .......||+.|+|||++.+..++.++||||+||++|+|++|..||...... .....+
T Consensus 154 L~DFG~a~~~~~~~------~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~--~~~~~i 225 (444)
T 3soa_A 154 LADFGLAIEVEGEQ------QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQH--RLYQQI 225 (444)
T ss_dssp ECCCSSCBCCCTTC------CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHH
T ss_pred EccCceeEEecCCC------ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHH--HHHHHH
Confidence 99999997654321 1123456999999999999999999999999999999999999999653211 111111
Q ss_pred -hhh--cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 686 -ESN--FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 686 -~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
... ++......+++. +.+++.+||+.||++|||+.|++++
T Consensus 226 ~~~~~~~~~~~~~~~s~~----------------------~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 226 KAGAYDFPSPEWDTVTPE----------------------AKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp HHTCCCCCTTTTTTSCHH----------------------HHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HhCCCCCCccccccCCHH----------------------HHHHHHHHcCCChhHCCCHHHHhcC
Confidence 111 111111112221 2236678999999999999999875
No 71
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.3e-40 Score=364.50 Aligned_cols=254 Identities=30% Similarity=0.415 Sum_probs=203.5
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLAL 533 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 533 (767)
.++|++.+.||+|+||.||+|.+. ++.||||+++... ..+.+.+|++++++++||||+++++++.. .....++
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~~~i 264 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLYI 264 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEEC----TTSCEEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEc----CCCceEE
Confidence 467888999999999999999987 7899999996433 55789999999999999999999999753 3346799
Q ss_pred EEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 534 VYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 534 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
||||+++|+|.+++.... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 265 v~e~~~~g~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~ 337 (450)
T 1k9a_A 265 VTEYMAKGSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTK 337 (450)
T ss_dssp EEECCTTCBHHHHHHHHC----TTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred EEEecCCCcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCcc
Confidence 999999999999998653 23379999999999999999999999 99999999999999999999999999997
Q ss_pred hhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhcccc
Q 004218 614 SLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPKN 692 (767)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~ 692 (767)
..... .....++..|+|||++.+..++.++||||||+++|||++ |+.||....... ....+.......
T Consensus 338 ~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~~~~~ 406 (450)
T 1k9a_A 338 EASST---------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKGYKMD 406 (450)
T ss_dssp ECC---------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHHHHTTCCCC
T ss_pred ccccc---------ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCCCCC
Confidence 43221 112246889999999999999999999999999999998 999997643222 222222222222
Q ss_pred hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 693 AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 693 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
.+..+++.+ .+++.+||+.||++|||+.|+++.|+.+...
T Consensus 407 ~p~~~~~~l----------------------~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 407 APDGCPPAV----------------------YDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp CCTTCCHHH----------------------HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred CCCcCCHHH----------------------HHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 222222222 2266689999999999999999999988754
No 72
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=5.8e-41 Score=356.33 Aligned_cols=251 Identities=25% Similarity=0.393 Sum_probs=198.5
Q ss_pred HHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC--cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST--GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
...++|++.+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|+++++.++||||+++++++. +.
T Consensus 26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~ 100 (362)
T 2bdw_A 26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EE 100 (362)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CS
T ss_pred CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eC
Confidence 34568999999999999999999976 489999999965432 34567889999999999999999999954 45
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC---CceE
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED---MTAK 605 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~---~~~k 605 (767)
...++||||+++|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.+ +.+|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~k 171 (362)
T 2bdw_A 101 SFHYLVFDLVTGGELFEDIVARE------FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVK 171 (362)
T ss_dssp SEEEEEECCCCSCBHHHHHTTCS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEE
T ss_pred CEEEEEEecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEE
Confidence 66799999999999999987543 389999999999999999999999 99999999999999865 4599
Q ss_pred EccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh
Q 004218 606 VGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV 685 (767)
Q Consensus 606 l~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~ 685 (767)
|+|||++....... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||...... .....+
T Consensus 172 l~DfG~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~--~~~~~i 242 (362)
T 2bdw_A 172 LADFGLAIEVNDSE-------AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQI 242 (362)
T ss_dssp ECCCTTCBCCTTCC-------SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHH
T ss_pred EeecCcceEecCCc-------ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHH
Confidence 99999997654321 123456999999999999999999999999999999999999999653211 111111
Q ss_pred h-hh--cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 686 E-SN--FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 686 ~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
. .. ++......+++. +.+++.+||+.||++|||+.|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~----------------------~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 243 KAGAYDYPSPEWDTVTPE----------------------AKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp HHTCCCCCTTGGGGSCHH----------------------HHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HhCCCCCCcccccCCCHH----------------------HHHHHHHHcCCChhhCcCHHHHhcC
Confidence 1 11 111111111111 2236778999999999999999875
No 73
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=345.98 Aligned_cols=251 Identities=24% Similarity=0.347 Sum_probs=190.9
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC--------------------------cchhhHHHHHHHHh
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST--------------------------GTWKSFFAECEALR 506 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------------------------~~~~~~~~e~~~l~ 506 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 468999999999999999999975 588999999864321 12356889999999
Q ss_pred cCCCCCceeEEeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 004218 507 NTRHRNLVKLITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPI 586 (767)
Q Consensus 507 ~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i 586 (767)
+++||||+++++++.. ......++||||+++++|.+++... .+++.++..++.|++.||+|||++ +|
T Consensus 92 ~l~h~~iv~~~~~~~~---~~~~~~~lv~e~~~~~~l~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i 158 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDD---PNEDHLYMVFELVNQGPVMEVPTLK-------PLSEDQARFYFQDLIKGIEYLHYQ---KI 158 (298)
T ss_dssp TCCCTTBCCEEEEEEC---SSSSEEEEEEECCTTCBSCCSSCSS-------CCCHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hCCCCCCCeEEEEEEc---CCCCEEEEEEecCCCCcHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ce
Confidence 9999999999999753 2356789999999999998876432 399999999999999999999999 99
Q ss_pred EeecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCC---CCCcccchhhhHHHHH
Q 004218 587 VHCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEK---PSTAGDVYSFGVMLLE 663 (767)
Q Consensus 587 vH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~slG~il~e 663 (767)
+||||||+||+++.++.+||+|||+++...... .......||+.|+|||++.+.. ++.++||||+||++|+
T Consensus 159 vH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~ 232 (298)
T 2zv2_A 159 IHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSD------ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYC 232 (298)
T ss_dssp ECCCCCGGGEEECTTSCEEECCCTTCEECSSSS------CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHH
T ss_pred eccCCCHHHEEECCCCCEEEecCCCcccccccc------ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHH
Confidence 999999999999999999999999997653321 1123456899999999987765 3778999999999999
Q ss_pred HHhCCCCCCCcccCCcchhhHhhhh-cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHH
Q 004218 664 IFTGMSPTHESFAGEVSLVKWVESN-FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIR 742 (767)
Q Consensus 664 l~tg~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~ 742 (767)
|++|+.||...... .....+... .+......+++ . +.+++.+||+.||++|||++
T Consensus 233 l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~------------------~----l~~li~~~l~~dp~~R~s~~ 288 (298)
T 2zv2_A 233 FVFGQCPFMDERIM--CLHSKIKSQALEFPDQPDIAE------------------D----LKDLITRMLDKNPESRIVVP 288 (298)
T ss_dssp HHHSSCSSCCSSHH--HHHHHHHHCCCCCCSSSCCCH------------------H----HHHHHHHHTCSCTTTSCCHH
T ss_pred HHHCCCCCCCccHH--HHHHHHhcccCCCCCccccCH------------------H----HHHHHHHHhhcChhhCCCHH
Confidence 99999999653211 111111110 00000001111 1 22367789999999999999
Q ss_pred HHHHH
Q 004218 743 EALRR 747 (767)
Q Consensus 743 evl~~ 747 (767)
|++++
T Consensus 289 e~l~h 293 (298)
T 2zv2_A 289 EIKLH 293 (298)
T ss_dssp HHTTC
T ss_pred HHhcC
Confidence 99864
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.5e-40 Score=370.55 Aligned_cols=359 Identities=19% Similarity=0.253 Sum_probs=294.1
Q ss_pred ccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeec
Q 004218 4 LVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIG 83 (767)
Q Consensus 4 L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 83 (767)
.+++|+++|+++ .+|..++ ++|++|++++|.+.+..|..|.++++|++|+|++|.+++..|..|+.+++|++|+|+
T Consensus 33 ~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 368999999998 7998775 689999999999997777899999999999999999998888899999999999999
Q ss_pred CccccCCCCCCccccccccCCCCCCEEECcCCcceee-cCchhhhhccccCeEEccCCcccccCCccccCCCCC--CEEE
Q 004218 84 FNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGE-IPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSL--TLLN 160 (767)
Q Consensus 84 ~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~ 160 (767)
+|++... +.. .+++|++|++++|++++. .|..++++++ |++|++++|+++.. .+..+++| ++|+
T Consensus 109 ~N~l~~l-------p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~-L~~L~L~~n~l~~~---~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 109 HNRLQNI-------SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTK-LTFLGLSAAKFRQL---DLLPVAHLHLSCIL 175 (562)
T ss_dssp TSCCCEE-------CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTT-CCEEEEECSBCCTT---TTGGGTTSCEEEEE
T ss_pred CCcCCcc-------Ccc--ccccCCEEECCCCCccccCchHhhcccCc-ccEEecCCCccccC---chhhhhhceeeEEE
Confidence 9998743 333 789999999999999863 4688999988 99999999999853 34555555 9999
Q ss_pred CcCCcC--cccCccccCCCC------------------------------------------------------------
Q 004218 161 LSYNSI--SGEILTEIGQLQ------------------------------------------------------------ 178 (767)
Q Consensus 161 l~~n~i--~~~~~~~~~~l~------------------------------------------------------------ 178 (767)
+++|.+ ++..+..+..+.
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 999988 655555554433
Q ss_pred ---------------------CCCEEEccCCccccccCcCc-----ccC--------------------------CCCce
Q 004218 179 ---------------------ELQSLDLAGNQISGSIPNTL-----GNL--------------------------KKLNQ 206 (767)
Q Consensus 179 ---------------------~L~~L~L~~n~i~~~~~~~~-----~~l--------------------------~~L~~ 206 (767)
+|++|++++|.+.+.+|..+ ..+ .+|++
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence 56677777777776666554 222 23666
Q ss_pred eeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCC--chhhcCCCceeEEEccC
Q 004218 207 IDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTL--PEEIGMLGNVVTIDLSA 284 (767)
Q Consensus 207 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~--~~~~~~l~~L~~L~ls~ 284 (767)
|++++|.+.... .+..+++|++|++++|++++..|..+..+++|. .+++++|++++.. |..++.+++|+.|++++
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ-TLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCC-EEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCC-EEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 666666664221 126889999999999999988999999999995 4599999999743 56789999999999999
Q ss_pred CCCCC-CCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcC
Q 004218 285 NGLSG-NLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVV 363 (767)
Q Consensus 285 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 363 (767)
|.+++ ..+..+..+++|+.|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++++
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCC
Confidence 99998 4455689999999999999999876665544 68999999999999 77877779999999999999999877
Q ss_pred CC-CccccccccccccCCcCccc
Q 004218 364 PR-EGIFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 364 ~~-~~~~~~~~~~~l~~Np~~c~ 385 (767)
+. ...++++..+++.+|||.|.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCC
T ss_pred HHHHhcCCCCCEEEecCCCcCCC
Confidence 76 46678889999999999994
No 75
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.5e-41 Score=350.95 Aligned_cols=247 Identities=28% Similarity=0.371 Sum_probs=196.4
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|.+.+.||+|+||.||+|.+. +++.||+|++... .....+.+.+|+++++.++||||+++++++. ...
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~~ 82 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVIT-----TPT 82 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCC
Confidence 468999999999999999999974 5899999998643 2233467889999999999999999999964 445
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+ +|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+||
T Consensus 83 ~~~lv~E~~-~g~l~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DF 152 (336)
T 3h4j_B 83 DIVMVIEYA-GGELFDYIVEKK------RMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADF 152 (336)
T ss_dssp EEEEEECCC-CEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCS
T ss_pred EEEEEEECC-CCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEe
Confidence 679999999 679999887644 399999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
|++....... ......||+.|+|||++.+..+ ++++||||+||++|+|++|+.||........ ...+...
T Consensus 153 G~s~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~--~~~i~~~ 223 (336)
T 3h4j_B 153 GLSNIMTDGN-------FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL--FKKVNSC 223 (336)
T ss_dssp SCTBTTTTSB-------TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC--BCCCCSS
T ss_pred ccceeccCCc-------ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH--HHHHHcC
Confidence 9997654321 1234569999999999988776 7899999999999999999999976432211 0000000
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
....+..+++. +.+++.+||+.||.+|||++|++++
T Consensus 224 -~~~~p~~~s~~----------------------~~~li~~~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 224 -VYVMPDFLSPG----------------------AQSLIRRMIVADPMQRITIQEIRRD 259 (336)
T ss_dssp -CCCCCTTSCHH----------------------HHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred -CCCCcccCCHH----------------------HHHHHHHHcCCChhHCcCHHHHHhC
Confidence 00111112221 2237778999999999999999875
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-40 Score=375.42 Aligned_cols=368 Identities=21% Similarity=0.223 Sum_probs=239.8
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEe
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYN 81 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 81 (767)
++|++|||++|+++ .++...+..+++|++|++++|++.+..|+.|.++++|++|+|++|.+++..|..|+.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 47899999999998 55444455799999999999999988888999999999999999999976666799999999999
Q ss_pred ecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecC-chhhhhccccCeEEccCCcccccCCccccCCCCCCEEE
Q 004218 82 IGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIP-ESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLN 160 (767)
Q Consensus 82 l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 160 (767)
+++|.+... ..+..+.++++|++|++++|++.+.+| ..+..+++ |++|++++|++++..|..+..+++|++|+
T Consensus 105 Ls~n~l~~~-----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 105 LMGNPYQTL-----GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CTTCCCSSS-----CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-EEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCCCccccc-----chhhhhhccCCccEEECCCCccccccCHhhhhcccc-cCeeeccCCcccccChhhhhccccCceEe
Confidence 999998754 334567888999999999998443454 67888887 99999999999888888877665555555
Q ss_pred CcCCcCcccCccccCCCCCCCEEEccCCcccccc--CcC-----------------------------------------
Q 004218 161 LSYNSISGEILTEIGQLQELQSLDLAGNQISGSI--PNT----------------------------------------- 197 (767)
Q Consensus 161 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~----------------------------------------- 197 (767)
++.|.+.......+..+++|++|++++|++.+.. |..
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 5555444221111223444444444444443210 000
Q ss_pred -----------------------------------------------cccCCCCceeeCCCCcCCCCCcccc-cCccccc
Q 004218 198 -----------------------------------------------LGNLKKLNQIDLSGNELASEIPTSF-GNFQNLL 229 (767)
Q Consensus 198 -----------------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~ 229 (767)
+...++|+.|++++|.++. +|..+ ..+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~ 337 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLE 337 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCcccc
Confidence 0001233333334444332 22222 3344555
Q ss_pred cccccCcccCCCCCh---hhcccccccceeecccccCCCCCc--hhhcCCCceeEEEccCCCCCCCCCcccccCc-----
Q 004218 230 SIDLSNNKLNGNIPK---EILSLSSLTTIVNLSKNFLDGTLP--EEIGMLGNVVTIDLSANGLSGNLPNSFKNCK----- 299 (767)
Q Consensus 230 ~L~l~~n~l~~~~~~---~~~~l~~l~~~l~l~~n~l~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~----- 299 (767)
.|++++|++.+.+|. .+..+++| +.+++++|.+++..+ ..+..+++|+.|++++|+++ .+|..+..++
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSL-QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTC-CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEE
T ss_pred EEEccCCccccccccchhhhhccccC-cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEE
Confidence 555555554433321 13334444 222455554443221 23444445555555555444 3344444444
Q ss_pred ----------------ccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcC
Q 004218 300 ----------------SLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVV 363 (767)
Q Consensus 300 ----------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 363 (767)
+|+.|++++|++++. +..+++|++|+|++|+++ .+|. ...+++|+.|++++|++++.+
T Consensus 416 ~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 416 NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp ECTTSCCSCCCTTSCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCC
T ss_pred ECCCCCcccccchhcCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcC
Confidence 455555555555432 136889999999999998 6665 567899999999999999988
Q ss_pred CCC-ccccccccccccCCcCccc
Q 004218 364 PRE-GIFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 364 ~~~-~~~~~~~~~~l~~Np~~c~ 385 (767)
|.. ..++++..+++.+|||.|.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 490 DGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp TTGGGGCTTCCEEECCSSCBCCC
T ss_pred HHHHhcCcccCEEEecCCCccCC
Confidence 874 5678889999999999884
No 77
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=9.4e-41 Score=348.98 Aligned_cols=274 Identities=23% Similarity=0.371 Sum_probs=199.9
Q ss_pred HHHhcCCCCCCccccccceEEEEEEeC----CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCC
Q 004218 451 RRATGNFSHENLIGSGSFGSVYKGYLR----EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLD 524 (767)
Q Consensus 451 ~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~ 524 (767)
....++|.+.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++....
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~ 109 (313)
T 3brb_A 30 VIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS 109 (313)
T ss_dssp BCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC--
T ss_pred ccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecc
Confidence 334578889999999999999999854 24589999986543 234567889999999999999999999987544
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCce
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTA 604 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 604 (767)
.......++||||+++|+|.+++...........+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 110 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~ 186 (313)
T 3brb_A 110 SQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTV 186 (313)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCE
T ss_pred ccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcE
Confidence 333446799999999999999996544333345699999999999999999999999 99999999999999999999
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhh
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVK 683 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~ 683 (767)
||+|||+++........ .......+++.|+|||.+.+..++.++||||||+++|+|++ |..||...... ....
T Consensus 187 kl~Dfg~~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~ 260 (313)
T 3brb_A 187 CVADFGLSKKIYSGDYY----RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH--EMYD 260 (313)
T ss_dssp EECSCSCC--------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHH
T ss_pred EEeecCcceeccccccc----CcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH--HHHH
Confidence 99999999866433211 11233457889999999999999999999999999999999 88898653322 1111
Q ss_pred HhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 684 WVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
.............+.+. +.+++.+||+.||++|||+.|++++|+++.+..
T Consensus 261 ~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l 310 (313)
T 3brb_A 261 YLLHGHRLKQPEDCLDE----------------------LYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 310 (313)
T ss_dssp HHHTTCCCCCBTTCCHH----------------------HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCccccHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 11111111111111111 222667899999999999999999999987754
No 78
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.5e-41 Score=358.73 Aligned_cols=267 Identities=24% Similarity=0.383 Sum_probs=207.5
Q ss_pred hcCCCCCCccccccceEEEEEEeC--------CCcEEEEEEeeccCC-cchhhHHHHHHHHhcC-CCCCceeEEeeeecC
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR--------EGISVAVKVLDIEST-GTWKSFFAECEALRNT-RHRNLVKLITSCSSL 523 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~ 523 (767)
.++|.+.+.||+|+||.||+|.+. .+..||||++..... ...+.+.+|+++++++ +||||+++++++.
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~-- 145 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-- 145 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC--
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeec--
Confidence 468999999999999999999863 246799999965432 3456788999999999 8999999999964
Q ss_pred CcccceeeEEEEeecCCCChhhhhcccCCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCC
Q 004218 524 DFKNMEFLALVYEFLGNGSLGDWIHGERKN----------EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKP 593 (767)
Q Consensus 524 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp 593 (767)
.++..++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||+. +|+||||||
T Consensus 146 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 219 (382)
T 3tt0_A 146 ---QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAA 219 (382)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCG
T ss_pred ---cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCc
Confidence 445579999999999999999865421 1124599999999999999999999999 999999999
Q ss_pred CCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCC
Q 004218 594 GNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTH 672 (767)
Q Consensus 594 ~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~ 672 (767)
+||+++.++.+||+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|+|++ |+.||.
T Consensus 220 ~NIll~~~~~~kL~DFG~a~~~~~~~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~ 295 (382)
T 3tt0_A 220 RNVLVTEDNVMKIADFGLARDIHHIDYY----KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP 295 (382)
T ss_dssp GGEEECTTCCEEECSCSCCCCSSCCCTT----CCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred ceEEEcCCCcEEEcccCccccccccccc----ccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999865432111 11233457889999999999999999999999999999999 999986
Q ss_pred CcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHH
Q 004218 673 ESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQ 752 (767)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 752 (767)
..... .....+...........+.+. +.+++.+||+.||++|||++|++++|+.+.
T Consensus 296 ~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 351 (382)
T 3tt0_A 296 GVPVE--ELFKLLKEGHRMDKPSNCTNE----------------------LYMMMRDCWHAVPSQRPTFKQLVEDLDRIV 351 (382)
T ss_dssp TCCHH--HHHHHHHTTCCCCCCSSCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCHH--HHHHHHHcCCCCCCCccCCHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 53211 122222221111111111111 222667899999999999999999999998
Q ss_pred HHHh
Q 004218 753 KILL 756 (767)
Q Consensus 753 ~~~~ 756 (767)
....
T Consensus 352 ~~~~ 355 (382)
T 3tt0_A 352 ALTS 355 (382)
T ss_dssp HHSC
T ss_pred HHHh
Confidence 7554
No 79
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=2.1e-40 Score=341.75 Aligned_cols=251 Identities=28% Similarity=0.426 Sum_probs=197.2
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcc-------hhhHHHHHHHHhcCCCCCceeEEeeeecCCc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGT-------WKSFFAECEALRNTRHRNLVKLITSCSSLDF 525 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~-------~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 525 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++....... .+.+.+|++++++++||||+++++++....
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 468999999999999999999975 58999999986443221 267889999999999999999999964322
Q ss_pred ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEeecCCCCCeeeCCCCc
Q 004218 526 KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVP--IVHCDLKPGNILLDEDMT 603 (767)
Q Consensus 526 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~~~~~ 603 (767)
++||||+++|+|.+++.... ..+++..++.++.|++.||+|||++ + |+||||||+||+++.++.
T Consensus 97 ------~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~ 162 (287)
T 4f0f_A 97 ------RMVMEFVPCGDLYHRLLDKA-----HPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDE 162 (287)
T ss_dssp ------EEEEECCTTCBHHHHHHCTT-----SCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCT
T ss_pred ------eEEEEecCCCCHHHHHhccc-----CCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCC
Confidence 79999999999999886543 3499999999999999999999998 8 999999999999988776
Q ss_pred -----eEEccccchhhhhhhcCCCccccccccccCCCCccCccccC--CCCCCCcccchhhhHHHHHHHhCCCCCCCccc
Q 004218 604 -----AKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL--GEKPSTAGDVYSFGVMLLEIFTGMSPTHESFA 676 (767)
Q Consensus 604 -----~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~ 676 (767)
+||+|||.++.... ......||+.|+|||++. ...++.++||||+|+++|+|++|+.||.....
T Consensus 163 ~~~~~~kl~Dfg~~~~~~~---------~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~ 233 (287)
T 4f0f_A 163 NAPVCAKVADFGLSQQSVH---------SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSY 233 (287)
T ss_dssp TCSCCEEECCCTTCBCCSS---------CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred CCceeEEeCCCCccccccc---------cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccc
Confidence 99999999974322 123456899999999984 45578899999999999999999999976443
Q ss_pred CCcchhhHh-hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHH
Q 004218 677 GEVSLVKWV-ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKN 750 (767)
Q Consensus 677 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~ 750 (767)
......... ....+......+++. +.+++.+||+.||++|||++|+++.|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 234 GKIKFINMIREEGLRPTIPEDCPPR----------------------LRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp CHHHHHHHHHHSCCCCCCCTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred cHHHHHHHHhccCCCCCCCcccCHH----------------------HHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 332222221 111222222222222 2226678999999999999999999975
No 80
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=5.6e-41 Score=343.04 Aligned_cols=254 Identities=28% Similarity=0.413 Sum_probs=189.1
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCC----cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIEST----GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+. ++.||||++..... ...+.+.+|+++++.++||||+++++++. .++
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 79 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCL-----KEP 79 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----CC-
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----cCC
Confidence 468899999999999999999986 88999999864422 23567889999999999999999999964 445
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC--------C
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE--------D 601 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~--------~ 601 (767)
..++||||+++++|.+++... .+++..++.++.|++.||+|||++...+|+||||||+||+++. +
T Consensus 80 ~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~ 152 (271)
T 3dtc_A 80 NLCLVMEFARGGPLNRVLSGK-------RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSN 152 (271)
T ss_dssp -CEEEEECCTTEEHHHHHTSS-------CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSS
T ss_pred ceEEEEEcCCCCCHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccC
Confidence 679999999999999999643 3899999999999999999999981112999999999999986 7
Q ss_pred CceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcch
Q 004218 602 MTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSL 681 (767)
Q Consensus 602 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~ 681 (767)
+.+||+|||.++...... .....||+.|+|||.+.+..++.++||||+|+++|+|++|+.||........ .
T Consensus 153 ~~~kl~Dfg~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-~ 223 (271)
T 3dtc_A 153 KILKITDFGLAREWHRTT--------KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAV-A 223 (271)
T ss_dssp CCEEECCCCC---------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHH-H
T ss_pred cceEEccCCccccccccc--------ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-H
Confidence 789999999997654321 1234589999999999888899999999999999999999999965322111 1
Q ss_pred hhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHH
Q 004218 682 VKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNA 751 (767)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~ 751 (767)
...............+++. +.+++.+||+.||++|||+.|++++|+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~----------------------~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 224 YGVAMNKLALPIPSTCPEP----------------------FAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp HHHHTSCCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred HhhhcCCCCCCCCcccCHH----------------------HHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 1111111111111112211 22266789999999999999999999753
No 81
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=356.93 Aligned_cols=250 Identities=27% Similarity=0.351 Sum_probs=193.5
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~ 527 (767)
..++|++.+.||+|+||.||+|+++ +++.||||++... .....+.+.+|.++++.+ +||||+++++++ ..
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~~ 95 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF-----QT 95 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEE-----EC
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEE-----Ee
Confidence 4578999999999999999999976 4899999999653 233456688999999988 799999999995 45
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
...+|+||||+++|+|.+++...+. +++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 96 ~~~~~lv~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~ 166 (353)
T 3txo_A 96 PDRLFFVMEFVNGGDLMFHIQKSRR------FDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLA 166 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEEC
T ss_pred CCEEEEEEeCCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEc
Confidence 5678999999999999999976543 99999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~ 687 (767)
|||+++..... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+..
T Consensus 167 DFG~a~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~--~~~~~i~~ 238 (353)
T 3txo_A 167 DFGMCKEGICN------GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENED--DLFEAILN 238 (353)
T ss_dssp CCTTCBCSCC---------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH
T ss_pred cccceeecccC------CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHH--HHHHHHHc
Confidence 99999743211 11234567999999999998888999999999999999999999999653221 11111111
Q ss_pred hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCH------HHHHHH
Q 004218 688 NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDI------REALRR 747 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~------~evl~~ 747 (767)
... ..+..+++. +.+++.+||+.||++||++ +|++++
T Consensus 239 ~~~-~~p~~~~~~----------------------~~~li~~lL~~dP~~R~~~~~~~~~~~il~h 281 (353)
T 3txo_A 239 DEV-VYPTWLHED----------------------ATGILKSFMTKNPTMRLGSLTQGGEHAILRH 281 (353)
T ss_dssp CCC-CCCTTSCHH----------------------HHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred CCC-CCCCCCCHH----------------------HHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence 000 011111111 2236678999999999998 777763
No 82
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=9.9e-41 Score=346.85 Aligned_cols=261 Identities=29% Similarity=0.452 Sum_probs=198.6
Q ss_pred HhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
..++|++.+.||+|+||.||+|.+.. .+|+|+++... ....+.+.+|++++++++||||+++++++. .+.
T Consensus 34 ~~~~~~~~~~lG~G~~g~Vy~~~~~~--~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~------~~~ 105 (307)
T 3lb7_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT------KDN 105 (307)
T ss_dssp CTTSCCEEEEEEECSSCEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------SSS
T ss_pred cccceEEEeEecCCCCeEEEEEEECC--EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc------cCc
Confidence 34689999999999999999998753 58999886543 234567889999999999999999999853 233
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 106 ~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg 177 (307)
T 3lb7_A 106 LAIVTQWCEGSSLYKHLHVQE-----TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFG 177 (307)
T ss_dssp CEEEEECCSSCBHHHHHHTSC-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCC
T ss_pred EEEEEecCCCCcHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCC
Confidence 689999999999999997543 3499999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccC---CCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL---GEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~ 687 (767)
+++........ .......||+.|+|||++. +..++.++||||||+++|||++|+.||........ ....+..
T Consensus 178 ~a~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~-~~~~~~~ 252 (307)
T 3lb7_A 178 LATVKSRWSGS----QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ-IIFMVGR 252 (307)
T ss_dssp SSCC----------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-HHHHHHH
T ss_pred Cceeccccccc----ccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHH-HHHHHhc
Confidence 99754322111 1123456899999999875 56688899999999999999999999965432211 1111111
Q ss_pred hc-ccchh---hhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 688 NF-PKNAQ---QVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 688 ~~-~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
.. +.... ..+++ .+.+++.+||+.||++|||+.|+++.|+.+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~----------------------~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~p 303 (307)
T 3lb7_A 253 GYASPDLSKLYKNCPK----------------------AMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp TCCCCCSTTSCSSSCH----------------------HHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred CCCCcchhhhhcCCcH----------------------HHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhcc
Confidence 11 11111 11111 12236778999999999999999999998876543
No 83
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=1e-40 Score=350.38 Aligned_cols=259 Identities=24% Similarity=0.362 Sum_probs=198.4
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-Cc----EEEEEEeecc-CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GI----SVAVKVLDIE-STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~----~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
.++|++.+.||+|+||.||+|.+.. ++ +||+|.+... .....+.+.+|+.++++++||||++++++|...
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---- 89 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS---- 89 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS----
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC----
Confidence 3579999999999999999999653 44 4688887533 334567899999999999999999999997532
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
..++|+||+++|+|.+++.... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 90 --~~~~v~e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~ 159 (327)
T 3poz_A 90 --TVQLITQLMPFGCLLDYVREHK-----DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKIT 159 (327)
T ss_dssp --SEEEEEECCTTCBHHHHHHHST-----TSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEEC
T ss_pred --CeEEEEEecCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEc
Confidence 2579999999999999997643 2399999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~ 686 (767)
|||+++......... ......||..|+|||++.+..++.++|||||||++|||++ |+.||...... .....+.
T Consensus 160 Dfg~a~~~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~ 233 (327)
T 3poz_A 160 DFGLAKLLGAEEKEY----HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILE 233 (327)
T ss_dssp CTTHHHHHTTTCC-----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHH
T ss_pred cCcceeEccCCcccc----cccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH--HHHHHHH
Confidence 999998765432211 1233456889999999999999999999999999999999 99999654322 2222222
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
.............. +.+++.+||+.||++|||+.|++++|+.+.+.
T Consensus 234 ~~~~~~~~~~~~~~----------------------~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 234 KGERLPQPPICTID----------------------VYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp TTCCCCCCTTBCHH----------------------HHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred cCCCCCCCccCCHH----------------------HHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 22111111112211 11267789999999999999999999988654
No 84
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.1e-40 Score=339.98 Aligned_cols=257 Identities=27% Similarity=0.430 Sum_probs=204.1
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLAL 533 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 533 (767)
.++|++.+.||+|+||.||+|.+.+++.||+|++..... ..+.+.+|++++++++||||+++++++. .....++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~l 80 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPICL 80 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSCEE
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCCeEE
Confidence 357889999999999999999998889999999975432 3467899999999999999999999964 3455799
Q ss_pred EEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 534 VYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 534 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
||||+++++|.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+.
T Consensus 81 v~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~ 152 (267)
T 3t9t_A 81 VTEFMEHGCLSDYLRTQR-----GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTR 152 (267)
T ss_dssp EECCCTTCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGG
T ss_pred EEeCCCCCcHHHHHhhCc-----ccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccc
Confidence 999999999999997643 2389999999999999999999999 99999999999999999999999999997
Q ss_pred hhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhcccc
Q 004218 614 SLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPKN 692 (767)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~ 692 (767)
....... .......++..|+|||++.+..++.++||||+|+++|+|++ |+.||...... .....+.......
T Consensus 153 ~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~i~~~~~~~ 225 (267)
T 3t9t_A 153 FVLDDQY-----TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTGFRLY 225 (267)
T ss_dssp GBCCHHH-----HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCCCC
T ss_pred ccccccc-----cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH--HHHHHHhcCCcCC
Confidence 6533211 11123446788999999988889999999999999999999 89998653211 1111111111111
Q ss_pred hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHH
Q 004218 693 AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQK 753 (767)
Q Consensus 693 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 753 (767)
.+...++. +.+++.+||+.||++|||++|++++|+++.+
T Consensus 226 ~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 226 KPRLASTH----------------------VYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp CCTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCccCcHH----------------------HHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 11111111 2236778999999999999999999998865
No 85
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=9.2e-41 Score=350.58 Aligned_cols=259 Identities=25% Similarity=0.320 Sum_probs=200.0
Q ss_pred cCCCCCCccccccceEEEEEEeCC-Cc----EEEEEEeecc-CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLRE-GI----SVAVKVLDIE-STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~~-~~----~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
++|++.+.||+|+||.||+|.+.. ++ +||+|.+... .....+.+.+|+.++++++||||+++++++. +
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------~ 86 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP------G 86 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC------B
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc------C
Confidence 578899999999999999999653 44 3788877433 2344567889999999999999999999863 2
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
...++||||+++|+|.+++...+ ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 87 ~~~~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~D 158 (325)
T 3kex_A 87 SSLQLVTQYLPLGSLLDHVRQHR-----GALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVAD 158 (325)
T ss_dssp SSEEEEEECCTTCBSHHHHHSSG-----GGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECS
T ss_pred CccEEEEEeCCCCCHHHHHHHcc-----ccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECC
Confidence 34689999999999999997653 2388999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~ 687 (767)
||+++........ .......||..|+|||++.+..++.++||||+|+++|+|++ |+.||...... .....+..
T Consensus 159 fg~a~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~ 232 (325)
T 3kex_A 159 FGVADLLPPDDKQ----LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDLLEK 232 (325)
T ss_dssp CSGGGGSCCCTTC----CC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT--HHHHHHHT
T ss_pred CCcccccCccccc----ccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH--HHHHHHHc
Confidence 9999876443221 11234567889999999998899999999999999999999 99999764322 12222221
Q ss_pred hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 688 NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
............. +.+++.+||+.||++|||++|++++|+.+....
T Consensus 233 ~~~~~~~~~~~~~----------------------~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~~ 278 (325)
T 3kex_A 233 GERLAQPQICTID----------------------VYMVMVKCWMIDENIRPTFKELANEFTRMARDP 278 (325)
T ss_dssp TCBCCCCTTBCTT----------------------TTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred CCCCCCCCcCcHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 1111111111111 112677899999999999999999999886543
No 86
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=2.6e-41 Score=365.48 Aligned_cols=260 Identities=22% Similarity=0.272 Sum_probs=201.6
Q ss_pred CHHHHHHHhcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeee
Q 004218 446 SYDELRRATGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCS 521 (767)
Q Consensus 446 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~ 521 (767)
.+.+++...++|++.++||+|+||.||+|+++. ++.||+|++... .....+.+.+|..+++.++||||+++++++.
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 345566667899999999999999999999775 789999999642 2233455889999999999999999999954
Q ss_pred cCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC
Q 004218 522 SLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED 601 (767)
Q Consensus 522 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~ 601 (767)
+...+++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 145 -----~~~~~~lV~Ey~~gg~L~~~l~~~~-----~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~ 211 (437)
T 4aw2_A 145 -----DDNNLYLVMDYYVGGDLLTLLSKFE-----DRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMN 211 (437)
T ss_dssp -----CSSEEEEEECCCTTCBHHHHHHTTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred -----eCCEEEEEEecCCCCcHHHHHHHcc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCC
Confidence 4567899999999999999997632 2399999999999999999999999 99999999999999999
Q ss_pred CceEEccccchhhhhhhcCCCccccccccccCCCCccCccccC-----CCCCCCcccchhhhHHHHHHHhCCCCCCCccc
Q 004218 602 MTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL-----GEKPSTAGDVYSFGVMLLEIFTGMSPTHESFA 676 (767)
Q Consensus 602 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~ 676 (767)
+.+||+|||+++....... ......+||+.|+|||++. ...++.++||||+||++|||++|+.||.....
T Consensus 212 g~vkL~DFGla~~~~~~~~-----~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~ 286 (437)
T 4aw2_A 212 GHIRLADFGSCLKLMEDGT-----VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL 286 (437)
T ss_dssp SCEEECCCTTCEECCTTSC-----EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred CCEEEcchhhhhhcccCCC-----cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCCh
Confidence 9999999999976533211 1123457999999999986 56789999999999999999999999965322
Q ss_pred CCcchhhHhhh----hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCC--CCCHHHHHHH
Q 004218 677 GEVSLVKWVES----NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGG--RIDIREALRR 747 (767)
Q Consensus 677 ~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rpt~~evl~~ 747 (767)
... ....... .+|... ..+++. +.+++.+||..+|++ ||+++|++++
T Consensus 287 ~~~-~~~i~~~~~~~~~p~~~-~~~s~~----------------------~~dLi~~lL~~~~~r~~r~~~~eil~H 339 (437)
T 4aw2_A 287 VET-YGKIMNHKERFQFPTQV-TDVSEN----------------------AKDLIRRLICSREHRLGQNGIEDFKKH 339 (437)
T ss_dssp HHH-HHHHHTHHHHCCCCSSC-CCSCHH----------------------HHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred hHH-HHhhhhccccccCCccc-ccCCHH----------------------HHHHHHHHhcccccccCCCCHHHHhCC
Confidence 111 1111110 111110 011111 223666888888888 9999999875
No 87
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=8e-41 Score=354.53 Aligned_cols=269 Identities=25% Similarity=0.374 Sum_probs=206.2
Q ss_pred HHHhcCCCCCCccccccceEEEEEEeC------CCcEEEEEEeeccCC-cchhhHHHHHHHHhcCCCCCceeEEeeeecC
Q 004218 451 RRATGNFSHENLIGSGSFGSVYKGYLR------EGISVAVKVLDIEST-GTWKSFFAECEALRNTRHRNLVKLITSCSSL 523 (767)
Q Consensus 451 ~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 523 (767)
....++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|++++++++||||+++++++.
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-- 120 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA-- 120 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC--
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--
Confidence 345678999999999999999999975 348899999975432 34567899999999999999999999964
Q ss_pred CcccceeeEEEEeecCCCChhhhhcccCCCC------------------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q 004218 524 DFKNMEFLALVYEFLGNGSLGDWIHGERKNE------------------HGNGLNFLERLNIAIDIASALDYLHNDCEVP 585 (767)
Q Consensus 524 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ 585 (767)
.+...++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||++ +
T Consensus 121 ---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ 194 (343)
T 1luf_A 121 ---VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---K 194 (343)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred ---cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence 3456799999999999999997643210 124599999999999999999999999 9
Q ss_pred eEeecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHH
Q 004218 586 IVHCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIF 665 (767)
Q Consensus 586 ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~ 665 (767)
|+||||||+||+++.++.+||+|||+++........ .......||+.|+|||++.+..++.++||||||+++|||+
T Consensus 195 ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 270 (343)
T 1luf_A 195 FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYY----KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIF 270 (343)
T ss_dssp CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCB----C----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred eecCCCCcceEEECCCCeEEEeecCCCcccccCccc----cccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHH
Confidence 999999999999999999999999999876543211 1123345789999999998888999999999999999999
Q ss_pred h-CCCCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHH
Q 004218 666 T-GMSPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREA 744 (767)
Q Consensus 666 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~ev 744 (767)
+ |+.||...... .....+...........+++. +.+++.+||+.||++|||+.|+
T Consensus 271 t~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~~ 326 (343)
T 1luf_A 271 SYGLQPYYGMAHE--EVIYYVRDGNILACPENCPLE----------------------LYNLMRLCWSKLPADRPSFCSI 326 (343)
T ss_dssp TTTCCTTTTSCHH--HHHHHHHTTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHH
T ss_pred hcCCCcCCCCChH--HHHHHHhCCCcCCCCCCCCHH----------------------HHHHHHHHcccCcccCCCHHHH
Confidence 9 99998653221 111111111111111111111 2226778999999999999999
Q ss_pred HHHHHHHHHHH
Q 004218 745 LRRLKNAQKIL 755 (767)
Q Consensus 745 l~~L~~~~~~~ 755 (767)
++.|+++....
T Consensus 327 ~~~L~~~~~~~ 337 (343)
T 1luf_A 327 HRILQRMCERA 337 (343)
T ss_dssp HHHHHHTTC--
T ss_pred HHHHHHHHhhh
Confidence 99998876543
No 88
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.6e-40 Score=354.95 Aligned_cols=251 Identities=23% Similarity=0.305 Sum_probs=199.2
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++..........+.+|+++++.++||||+++++++. +....+
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~~~ 124 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFE-----DKYEMV 124 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEE-----CSSEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEE-----eCCEEE
Confidence 468999999999999999999976 58999999997655555667899999999999999999999954 456789
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC--CCceEEcccc
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE--DMTAKVGDFG 610 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg 610 (767)
+||||+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++. .+.+||+|||
T Consensus 125 lv~E~~~gg~L~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG 196 (387)
T 1kob_A 125 LILEFLSGGELFDRIAAED-----YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFG 196 (387)
T ss_dssp EEEECCCCCBHHHHTTCTT-----CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCT
T ss_pred EEEEcCCCCcHHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecc
Confidence 9999999999999997543 2389999999999999999999999 9999999999999974 5789999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc-
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF- 689 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~- 689 (767)
+++...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||....... .........+
T Consensus 197 ~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~-~~~~i~~~~~~ 268 (387)
T 1kob_A 197 LATKLNPDE-------IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE-TLQNVKRCDWE 268 (387)
T ss_dssp TCEECCTTS-------CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHHCCCC
T ss_pred cceecCCCc-------ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCC
Confidence 997653321 1233468999999999999999999999999999999999999996532110 1111111111
Q ss_pred -ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 690 -PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 690 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
+......+++ .+.+++.+||+.||++|||+.|++++
T Consensus 269 ~~~~~~~~~s~----------------------~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 269 FDEDAFSSVSP----------------------EAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp CCSSTTTTSCH----------------------HHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred CCccccccCCH----------------------HHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 1111111111 12237779999999999999999975
No 89
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=351.13 Aligned_cols=250 Identities=24% Similarity=0.307 Sum_probs=183.8
Q ss_pred HhcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
..++|++.+.||+|+||.||+|.+.. ++.||||++.... ..+.+.+|++++++++||||+++++++. .....
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~~~~ 123 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFE-----TPTEI 123 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEe-----cCCeE
Confidence 45789999999999999999999864 8899999987432 3466789999999999999999999964 44567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC---CCceEEcc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE---DMTAKVGD 608 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~D 608 (767)
++||||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|
T Consensus 124 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~D 194 (349)
T 2w4o_A 124 SLVLELVTGGELFDRIVEKG------YYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIAD 194 (349)
T ss_dssp EEEECCCCSCBHHHHHTTCS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECC
T ss_pred EEEEEeCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEcc
Confidence 99999999999999997643 389999999999999999999999 9999999999999975 88999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.................
T Consensus 195 fg~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~ 267 (349)
T 2w4o_A 195 FGLSKIVEHQV-------LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCE 267 (349)
T ss_dssp CC-----------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTC
T ss_pred CccccccCccc-------ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCC
Confidence 99998653321 12345689999999999999999999999999999999999999965432211111111111
Q ss_pred ccc--chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPK--NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
+.. .....++. .+.+++.+||+.||++|||+.|++++
T Consensus 268 ~~~~~~~~~~~~~----------------------~~~~li~~~L~~dP~~Rpt~~e~l~h 306 (349)
T 2w4o_A 268 YYFISPWWDEVSL----------------------NAKDLVRKLIVLDPKKRLTTFQALQH 306 (349)
T ss_dssp CCCCTTTTTTSCH----------------------HHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred CccCCchhhhCCH----------------------HHHHHHHHHccCChhhCcCHHHHhcC
Confidence 110 00111111 12237779999999999999999874
No 90
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-40 Score=353.37 Aligned_cols=270 Identities=24% Similarity=0.381 Sum_probs=204.1
Q ss_pred HhcCCCCCCccccccceEEEEEEeC------CCcEEEEEEeecc-CCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCC
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR------EGISVAVKVLDIE-STGTWKSFFAECEALRNT-RHRNLVKLITSCSSLD 524 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~ 524 (767)
..++|++.+.||+|+||.||+|.+. +++.||+|++... .....+.+.+|+++++++ +||||+++++++.
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~--- 119 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT--- 119 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC---
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe---
Confidence 4578999999999999999999962 3668999999644 334557889999999999 8999999999964
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCC-----------------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKN-----------------EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIV 587 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~-----------------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iv 587 (767)
..+..++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||++ +|+
T Consensus 120 --~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iv 194 (344)
T 1rjb_A 120 --LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCV 194 (344)
T ss_dssp --SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred --eCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 345679999999999999999865421 0113489999999999999999999999 999
Q ss_pred eecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-
Q 004218 588 HCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT- 666 (767)
Q Consensus 588 H~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t- 666 (767)
||||||+||+++.++.+||+|||++......... .......||+.|+|||++.+..++.++||||||+++|+|+|
T Consensus 195 H~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~ 270 (344)
T 1rjb_A 195 HRDLAARNVLVTHGKVVKICDFGLARDIMSDSNY----VVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSL 270 (344)
T ss_dssp ETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTS----EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTT
T ss_pred cCCCChhhEEEcCCCcEEeCCCccCcccccCccc----eeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcC
Confidence 9999999999999999999999999866443211 12234457889999999988889999999999999999998
Q ss_pred CCCCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 004218 667 GMSPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALR 746 (767)
Q Consensus 667 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~ 746 (767)
|..||...... ...................++. +.+++.+||+.||++|||+.|+++
T Consensus 271 g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~~l~~ 327 (344)
T 1rjb_A 271 GVNPYPGIPVD-ANFYKLIQNGFKMDQPFYATEE----------------------IYIIMQSCWAFDSRKRPSFPNLTS 327 (344)
T ss_dssp SCCSSTTCCCS-HHHHHHHHTTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CCCCcccCCcH-HHHHHHHhcCCCCCCCCCCCHH----------------------HHHHHHHHcCCCchhCcCHHHHHH
Confidence 99999664322 1122222222221111112221 122667899999999999999999
Q ss_pred HHHHHHHHHhh
Q 004218 747 RLKNAQKILLK 757 (767)
Q Consensus 747 ~L~~~~~~~~~ 757 (767)
+|+.+......
T Consensus 328 ~l~~~~~~~~~ 338 (344)
T 1rjb_A 328 FLGCQLADAEE 338 (344)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHHHH
Confidence 99988765443
No 91
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1e-40 Score=349.09 Aligned_cols=264 Identities=26% Similarity=0.378 Sum_probs=205.2
Q ss_pred hcCCCCCCccccccceEEEEEEeC------CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR------EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 526 (767)
.++|.+.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----- 96 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS----- 96 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEe-----
Confidence 568999999999999999999862 35789999996443 334567889999999999999999999964
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCCC------------------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEe
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKNE------------------HGNGLNFLERLNIAIDIASALDYLHNDCEVPIVH 588 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH 588 (767)
.....++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||++ +|+|
T Consensus 97 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH 173 (314)
T 2ivs_A 97 QDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVH 173 (314)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEEC
T ss_pred cCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcc
Confidence 4456799999999999999998654210 123489999999999999999999999 9999
Q ss_pred ecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-C
Q 004218 589 CDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-G 667 (767)
Q Consensus 589 ~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g 667 (767)
|||||+||+++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++||||+|+++|||++ |
T Consensus 174 ~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g 249 (314)
T 2ivs_A 174 RDLAARNILVAEGRKMKISDFGLSRDVYEEDS----YVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLG 249 (314)
T ss_dssp CCCSGGGEEEETTTEEEECCCTTCEECTTTSC----EECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTS
T ss_pred cccchheEEEcCCCCEEEcccccccccccccc----ceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCC
Confidence 99999999999999999999999976543211 111233457888999999988889999999999999999999 9
Q ss_pred CCCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 668 MSPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 668 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
+.||...... .....+...........+++. +.+++.+||+.||++|||+.|++++
T Consensus 250 ~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------------~~~li~~~l~~dp~~Rps~~~l~~~ 305 (314)
T 2ivs_A 250 GNPYPGIPPE--RLFNLLKTGHRMERPDNCSEE----------------------MYRLMLQCWKQEPDKRPVFADISKD 305 (314)
T ss_dssp CCSSTTCCGG--GHHHHHHTTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred CCCCCCCCHH--HHHHHhhcCCcCCCCccCCHH----------------------HHHHHHHHccCChhhCcCHHHHHHH
Confidence 9999654322 122222221111111111211 2226678999999999999999999
Q ss_pred HHHHHH
Q 004218 748 LKNAQK 753 (767)
Q Consensus 748 L~~~~~ 753 (767)
|+++..
T Consensus 306 l~~~~~ 311 (314)
T 2ivs_A 306 LEKMMV 311 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 92
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=2.8e-40 Score=348.79 Aligned_cols=262 Identities=23% Similarity=0.355 Sum_probs=196.0
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc-----
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF----- 525 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~----- 525 (767)
..++|++.+.||+|+||.||+|++. +|+.||||++.... ....+.+.+|++++++++||||+++++++.....
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 3467999999999999999999986 69999999997543 3355778999999999999999999998754321
Q ss_pred -----------------------------------------------ccceeeEEEEeecCCCChhhhhcccCCCCCCCC
Q 004218 526 -----------------------------------------------KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNG 558 (767)
Q Consensus 526 -----------------------------------------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~ 558 (767)
....+.++||||+++|+|.+++...... ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~---~~ 160 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL---ED 160 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSG---GG
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCc---cc
Confidence 1223589999999999999999875432 33
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchhhhhhhcCCCcc------cccccccc
Q 004218 559 LNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSS------ISSTHVLK 632 (767)
Q Consensus 559 l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~------~~~~~~~~ 632 (767)
.++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++........... ........
T Consensus 161 ~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
T 3qd2_B 161 REHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQV 237 (332)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccC
Confidence 67778999999999999999999 9999999999999999999999999999876443211110 11223456
Q ss_pred CCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh-hhhcccchhhhccHHHHHhhhcchhh
Q 004218 633 GSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV-ESNFPKNAQQVLDRELRQLMMSSESQ 711 (767)
Q Consensus 633 gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 711 (767)
||+.|+|||++.+..++.++||||+|+++|||++|..|+.... ...... ...++ ..
T Consensus 238 gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~----~~~~~~~~~~~~-------------------~~ 294 (332)
T 3qd2_B 238 GTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERV----RIITDVRNLKFP-------------------LL 294 (332)
T ss_dssp -CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHHTTCCC-------------------HH
T ss_pred CCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHH----HHHHHhhccCCC-------------------cc
Confidence 9999999999999999999999999999999999877642110 000000 00000 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 712 TIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 712 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.....+ .+.+++.+||+.||++|||++|++++
T Consensus 295 ~~~~~~----~~~~li~~~l~~~p~~Rps~~~~l~~ 326 (332)
T 3qd2_B 295 FTQKYP----QEHMMVQDMLSPSPTERPEATDIIEN 326 (332)
T ss_dssp HHHHCH----HHHHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred cccCCh----hHHHHHHHHccCCCCcCCCHHHHhhc
Confidence 001111 11237779999999999999999874
No 93
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=2.6e-40 Score=345.73 Aligned_cols=206 Identities=28% Similarity=0.476 Sum_probs=160.8
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+. +|+.||+|++.... ....+.+.+|++++++++||||+++++++. .++..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~ 78 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIH-----TENKL 78 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEEC-----CTTEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEE-----ECCeE
Confidence 468999999999999999999975 58999999996543 334567889999999999999999999954 45678
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||++ |+|.+++...........+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.
T Consensus 79 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 154 (317)
T 2pmi_A 79 TLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGL 154 (317)
T ss_dssp EEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSS
T ss_pred EEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCcc
Confidence 99999998 59999987654333344599999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
++....... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...
T Consensus 155 ~~~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 212 (317)
T 2pmi_A 155 ARAFGIPVN------TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT 212 (317)
T ss_dssp CEETTSCCC------CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ceecCCCcc------cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 976532211 1233468999999999876 46899999999999999999999999654
No 94
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-41 Score=349.76 Aligned_cols=207 Identities=29% Similarity=0.408 Sum_probs=172.8
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC-----cchhhHHHHHHHHhcC---CCCCceeEEeeeecC
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST-----GTWKSFFAECEALRNT---RHRNLVKLITSCSSL 523 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l---~h~niv~~~~~~~~~ 523 (767)
..++|++.+.||+|+||.||+|++. +++.||||++..... .....+.+|+++++.+ +||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 4679999999999999999999964 589999999864321 2234677888887776 499999999998765
Q ss_pred CcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc
Q 004218 524 DFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT 603 (767)
Q Consensus 524 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~ 603 (767)
........++||||++ |+|.+++.... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~ 158 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAP----PPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGT 158 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCC----TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhcc----CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCC
Confidence 4444557899999997 59999997654 23489999999999999999999999 9999999999999999999
Q ss_pred eEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 604 AKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 604 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+||+|||.++...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||...
T Consensus 159 ~kl~Dfg~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~ 222 (308)
T 3g33_A 159 VKLADFGLARIYSYQM-------ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN 222 (308)
T ss_dssp EEECSCSCTTTSTTCC-------CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCS
T ss_pred EEEeeCccccccCCCc-------ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999997653221 123456899999999999999999999999999999999999999654
No 95
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-40 Score=387.74 Aligned_cols=373 Identities=21% Similarity=0.236 Sum_probs=287.5
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccC-CccccCCCCCCEEEcccccCcccCCccCCCCCCCcEE
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKI-PGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMY 80 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 80 (767)
++|++|||++|.++ .++...+..+++|++|+|++|...+.+ |..|+++++|++|+|++|.+++..|..|+.+++|++|
T Consensus 24 ~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 67999999999999 555555567999999999999665555 8899999999999999999998889999999999999
Q ss_pred eecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecC-chhhhhccccCeEEccCCcccccCCccccCC--CCCC
Q 004218 81 NIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIP-ESIGNLSNVLSKLYMGGNRFYGKIPTSIGRL--RSLT 157 (767)
Q Consensus 81 ~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l--~~L~ 157 (767)
+|++|.+.+... ....+.++++|++|+|++|.+++..+ ..++++++ |++|++++|.+++..+..+..+ ++|+
T Consensus 103 ~Ls~n~l~~~~~----~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~-L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 103 RLYFCGLSDAVL----KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp ECTTCCCSSCCS----TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS-CCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred eCcCCCCCcccc----cCccccccCCCCEEECCCCcccccccchhHhhCCC-CCEEECCCCcCCeeCHHHcccccCCccc
Confidence 999999875211 11237899999999999999987655 57899998 9999999999998888888766 6666
Q ss_pred EEECcCCcCcccCccccCCC------------------------------------------------------------
Q 004218 158 LLNLSYNSISGEILTEIGQL------------------------------------------------------------ 177 (767)
Q Consensus 158 ~L~l~~n~i~~~~~~~~~~l------------------------------------------------------------ 177 (767)
.|++++|.+.+..+..+..+
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 66666665554333322221
Q ss_pred --------CCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhccc
Q 004218 178 --------QELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSL 249 (767)
Q Consensus 178 --------~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 249 (767)
++|++|+|++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..+..+
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 457777777777776667777788888888888888887777788888888888888888887777788888
Q ss_pred ccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCC-------------------------------------
Q 004218 250 SSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLP------------------------------------- 292 (767)
Q Consensus 250 ~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~------------------------------------- 292 (767)
++| +.+++++|.+.+..+..|..+++|+.|+|++|.+++...
T Consensus 338 ~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 338 PKV-AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp TTC-CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred CCC-CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 887 444888888887777778888888888888887764211
Q ss_pred ---cccccCcccceeeccCccccCC------------------------------CCchhhccCCceEEEcCCcccCCCC
Q 004218 293 ---NSFKNCKSLEKLLMANNKFSGP------------------------------IPNILAELKGLEVLDLSSNKLSGSI 339 (767)
Q Consensus 293 ---~~~~~l~~L~~L~l~~n~l~~~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (767)
..+..+++|+.|++++|++++. .+..|..+++|+.|+|++|.+++..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 496 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence 0122556666666666666532 1234667788888888888888888
Q ss_pred CccccccccCceEeccCCcCcCcCCCCccccccccccccCCcC
Q 004218 340 PSDLQNLRALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPK 382 (767)
Q Consensus 340 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~ 382 (767)
|..+..+++|+.|+|++|++++.++.... +++..+++.+|..
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp TTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred hhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 88888899999999999999887766543 6777788887754
No 96
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=2.4e-40 Score=348.82 Aligned_cols=199 Identities=28% Similarity=0.371 Sum_probs=172.9
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC---cchhhHHHHHHHHhcC-CCCCceeEEeeeecCCcccce
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST---GTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~ 529 (767)
++|++.+.||+|+||.||+|+++ +++.||+|++..... ...+.+.+|..+++++ +||||+++++++. ...
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~-----~~~ 83 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQ-----TES 83 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSS
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEE-----eCC
Confidence 57899999999999999999976 488999999975422 2345678999999988 8999999999953 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.+++||||+++|+|.+++.... .+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 84 ~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DF 154 (345)
T 3a8x_A 84 RLFFVIEYVNGGDLMFHMQRQR------KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDY 154 (345)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCG
T ss_pred EEEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEec
Confidence 7899999999999999997643 299999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCC
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHE 673 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~ 673 (767)
|+++..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||..
T Consensus 155 G~a~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 212 (345)
T 3a8x_A 155 GMCKEGLRP------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI 212 (345)
T ss_dssp GGCBCSCCT------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred cccccccCC------CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCC
Confidence 999753221 1122446799999999999999999999999999999999999999964
No 97
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=2.2e-40 Score=341.59 Aligned_cols=200 Identities=27% Similarity=0.427 Sum_probs=168.7
Q ss_pred cCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
++|++.+.||+|+||.||+|.+.+++.||+|++.... ....+.+.+|++++++++||||+++++++. ..+..+
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~ 76 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-----TKKRLV 76 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEE-----CSSCEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEc-----cCCeEE
Confidence 5789999999999999999999889999999986443 223467889999999999999999999964 445679
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccch
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLA 612 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 612 (767)
+||||+++ +|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+
T Consensus 77 lv~e~~~~-~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~ 147 (288)
T 1ob3_A 77 LVFEHLDQ-DLKKLLDVCE-----GGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLA 147 (288)
T ss_dssp EEEECCSE-EHHHHHHTST-----TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHH
T ss_pred EEEEecCC-CHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccc
Confidence 99999986 9999987643 2389999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhhhcCCCccccccccccCCCCccCccccCCC-CCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 613 RSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+....... ......||+.|+|||++.+. .++.++||||+||++|+|++|+.||...
T Consensus 148 ~~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~ 204 (288)
T 1ob3_A 148 RAFGIPVR------KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV 204 (288)
T ss_dssp HHHCC---------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccCcccc------ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 86543211 11234589999999998764 5899999999999999999999999654
No 98
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=2.7e-40 Score=344.23 Aligned_cols=246 Identities=24% Similarity=0.335 Sum_probs=197.3
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|+.. +|+.||+|++... .....+.+.+|+.+++.++||||+++++++. +..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~-----~~~ 79 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQ-----DAQ 79 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEE-----CSS
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEE-----eCC
Confidence 367899999999999999999976 5899999999653 2234567889999999999999999999954 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.+++||||+++|+|.+++.... .+++..+..++.|++.||+|||++ +|+||||||+||+++.+|.+||+||
T Consensus 80 ~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Df 150 (318)
T 1fot_A 80 QIFMIMDYIEGGELFSLLRKSQ------RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDF 150 (318)
T ss_dssp EEEEEECCCCSCBHHHHHHHTS------SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEeCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeec
Confidence 7899999999999999997643 389999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||....... ..........
T Consensus 151 g~a~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~ 220 (318)
T 1fot_A 151 GFAKYVPDV---------TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK-TYEKILNAEL 220 (318)
T ss_dssp SSCEECSSC---------BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHCCC
T ss_pred CcceecCCc---------cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCC
Confidence 999754321 234569999999999999999999999999999999999999996532110 0111111110
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCC-----CHHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRI-----DIREALRR 747 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~ 747 (767)
..+..+++ .+.+++.+||+.||++|| +++|++++
T Consensus 221 --~~p~~~~~----------------------~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h 259 (318)
T 1fot_A 221 --RFPPFFNE----------------------DVKDLLSRLITRDLSQRLGNLQNGTEDVKNH 259 (318)
T ss_dssp --CCCTTSCH----------------------HHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred --CCCCCCCH----------------------HHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence 01111111 122366789999999999 88998864
No 99
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=3.3e-40 Score=352.06 Aligned_cols=280 Identities=16% Similarity=0.198 Sum_probs=204.8
Q ss_pred HhcCCCCCCccccccceEEEEEEeCC------CcEEEEEEeeccCCcc-----------hhhHHHHHHHHhcCCCCCcee
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLRE------GISVAVKVLDIESTGT-----------WKSFFAECEALRNTRHRNLVK 515 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~~~-----------~~~~~~e~~~l~~l~h~niv~ 515 (767)
..++|++.+.||+|+||.||+|.+.. ++.||||++....... ...+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34689999999999999999999764 4789999986543211 122345566677788999999
Q ss_pred EEeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCC
Q 004218 516 LITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGN 595 (767)
Q Consensus 516 ~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~N 595 (767)
+++++... .....+.++||||+ +++|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+|
T Consensus 113 ~~~~~~~~-~~~~~~~~lv~e~~-g~~L~~~~~~~~-----~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~N 182 (364)
T 3op5_A 113 YWGSGLHD-KNGKSYRFMIMDRF-GSDLQKIYEANA-----KRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASN 182 (364)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECE-EEEHHHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGG
T ss_pred EEeeeeec-cCCcceEEEEEeCC-CCCHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHH
Confidence 99997642 22346789999999 999999997642 3499999999999999999999999 99999999999
Q ss_pred eeeC--CCCceEEccccchhhhhhhcCCCc-cccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCC
Q 004218 596 ILLD--EDMTAKVGDFGLARSLLERIGNQS-SISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTH 672 (767)
Q Consensus 596 Il~~--~~~~~kl~Dfg~a~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~ 672 (767)
|+++ .++.+||+|||+++.+........ .........||+.|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus 183 ill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~ 262 (364)
T 3op5_A 183 LLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWE 262 (364)
T ss_dssp EEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG
T ss_pred EEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence 9999 889999999999987654332211 1112234569999999999999999999999999999999999999997
Q ss_pred CcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHH
Q 004218 673 ESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQ 752 (767)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 752 (767)
...... .........+........ ...+.. ... ...+.+++..||+.||++||+++++++.|+++.
T Consensus 263 ~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~----~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~ 328 (364)
T 3op5_A 263 DNLKDP-KYVRDSKIRYRENIASLM----DKCFPA-----ANA----PGEIAKYMETVKLLDYTEKPLYENLRDILLQGL 328 (364)
T ss_dssp GGTTCH-HHHHHHHHHHHHCHHHHH----HHHSCT-----TCC----CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHH
T ss_pred ccccCH-HHHHHHHHHhhhhHHHHH----HHhccc-----ccC----HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 532221 111111111111111111 111100 000 112233777899999999999999999999988
Q ss_pred HHHh
Q 004218 753 KILL 756 (767)
Q Consensus 753 ~~~~ 756 (767)
....
T Consensus 329 ~~~~ 332 (364)
T 3op5_A 329 KAIG 332 (364)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 7654
No 100
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-39 Score=373.33 Aligned_cols=123 Identities=24% Similarity=0.336 Sum_probs=66.4
Q ss_pred ccccCCCCCchhhcCCCceeEEEccCCCCCCCCC-cccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccC-
Q 004218 259 SKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLP-NSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLS- 336 (767)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~- 336 (767)
++|++++..|..+..+++|+.|++++|.+++.+| ..|.++++|+.|++++|++.+..+..|..+++|+.|++++|.+.
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 3344444444445555555555555555543322 44555555555555555555555555555555555555555554
Q ss_pred -CCCCccccccccCceEeccCCcCcCcCCCC-ccccccccccccCCc
Q 004218 337 -GSIPSDLQNLRALRSLNLTFNNLEGVVPRE-GIFRHTSMVHLEGNP 381 (767)
Q Consensus 337 -~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~l~~Np 381 (767)
+..|..+..+++|+.|++++|++++.++.. ..++++..+++.+|.
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC
Confidence 345556666666666666666666655543 334556666666664
No 101
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.3e-40 Score=348.29 Aligned_cols=276 Identities=25% Similarity=0.337 Sum_probs=205.2
Q ss_pred cCC-CCCCccccccceEEEEEEeC-----CCcEEEEEEeeccCC-cchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 455 GNF-SHENLIGSGSFGSVYKGYLR-----EGISVAVKVLDIEST-GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 455 ~~~-~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
++| ++.+.||+|+||.||++.+. +++.||||++..... ...+.+.+|++++++++||||+++++++.. ..
T Consensus 30 ~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~ 106 (318)
T 3lxp_A 30 KRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCED---AG 106 (318)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---TT
T ss_pred HHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEec---CC
Confidence 344 89999999999999998753 588999999975432 345678999999999999999999999753 23
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
...+++||||+++|+|.+++.... +++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 107 ~~~~~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~ 176 (318)
T 3lxp_A 107 AASLQLVMEYVPLGSLRDYLPRHS-------IGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIG 176 (318)
T ss_dssp TTEEEEEECCCTTCBHHHHGGGSC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEEC
T ss_pred CceEEEEEecccCCcHHHHHhhCC-------CCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEEC
Confidence 457799999999999999997643 89999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~ 687 (767)
|||.+........ .........||..|+|||++.+..++.++||||+|+++|+|++|+.||............
T Consensus 177 Dfg~a~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~---- 249 (318)
T 3lxp_A 177 DFGLAKAVPEGHE---YYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIG---- 249 (318)
T ss_dssp CGGGCEECCTTCS---EEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHC----
T ss_pred Ccccccccccccc---ccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhc----
Confidence 9999986643211 111123345788899999999888999999999999999999999998543211100000
Q ss_pred hcccchhhhccHHHHHhhhcch--hhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 004218 688 NFPKNAQQVLDRELRQLMMSSE--SQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLK 757 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 757 (767)
... .......+...+.... ....... ..+.+++.+||+.||++|||++|+++.|+.+.+.+..
T Consensus 250 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~ 314 (318)
T 3lxp_A 250 -IAQ--GQMTVLRLTELLERGERLPRPDKCP----AEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG 314 (318)
T ss_dssp -SCC--HHHHHHHHHHHHHTTCCCCCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred -ccc--cchhHHHHHHHHhcccCCCCCcccc----HHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhcc
Confidence 000 0000000111110000 0000111 1222377799999999999999999999999887764
No 102
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=4.5e-41 Score=350.74 Aligned_cols=264 Identities=24% Similarity=0.390 Sum_probs=192.3
Q ss_pred hcCCCCCCccccccceEEEEEEe-CCCcEEEEEEeeccCC---cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL-REGISVAVKVLDIEST---GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+ .+++.||||++..... .....+.+|++++++++||||+++++++.... ..+.
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~~ 89 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PAGP 89 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE-TTEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC-CCCc
Confidence 46899999999999999999997 4589999999975432 23457889999999999999999999875422 2234
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 90 ~~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Df 160 (311)
T 3ork_A 90 LPYIVMEYVDGVTLRDIVHTEG------PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDF 160 (311)
T ss_dssp EEEEEEECCCEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCC
T ss_pred ccEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeec
Confidence 5699999999999999997643 389999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|+++........ ........||+.|+|||++.+..++.++||||+|+++|+|++|+.||......... ........
T Consensus 161 g~a~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~-~~~~~~~~ 236 (311)
T 3ork_A 161 GIARAIADSGNS---VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVA-YQHVREDP 236 (311)
T ss_dssp SCC---------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-HHHHHCCC
T ss_pred cCcccccccccc---cccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH-HHHhcCCC
Confidence 999866443211 11223456899999999999999999999999999999999999999653221110 01111100
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHH-HHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALR-RLKNA 751 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~-~L~~~ 751 (767)
.. .. .....+...+.+++.+||+.||++||++.++++ .+...
T Consensus 237 ~~-~~-------------------~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 237 IP-PS-------------------ARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp CC-HH-------------------HHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred CC-cc-------------------cccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 00 00 000001111223677899999999997766554 44443
No 103
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=5.9e-40 Score=340.55 Aligned_cols=268 Identities=17% Similarity=0.163 Sum_probs=205.9
Q ss_pred hcCCCCCCccccccceEEEEEEe-CCCcEEEEEEeeccCCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL-REGISVAVKVLDIESTGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+ .+++.||||++... ...+.+.+|+++++.+ +|++++++++++ ......
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~e~~~~~~l~~~~~i~~~~~~~-----~~~~~~ 81 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR--SDAPQLRDEYRTYKLLAGCTGIPNVYYFG-----QEGLHN 81 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC--TTSCCHHHHHHHHHHTTTCTTCCCEEEEE-----EETTEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccC--CccHHHHHHHHHHHHHhcCCCCCeEEeec-----CCCcee
Confidence 46799999999999999999996 45899999998643 3345688999999999 799999999985 345667
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc-----eEE
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT-----AKV 606 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~-----~kl 606 (767)
++||||+ +++|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++. +||
T Consensus 82 ~lv~e~~-~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl 152 (298)
T 1csn_A 82 VLVIDLL-GPSLEDLLDLCG-----RKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYV 152 (298)
T ss_dssp EEEEECC-CCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEE
T ss_pred EEEEEec-CCCHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEE
Confidence 9999999 899999997643 2399999999999999999999999 9999999999999987765 999
Q ss_pred ccccchhhhhhhcCCCcc-ccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcc-hhh-
Q 004218 607 GDFGLARSLLERIGNQSS-ISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVS-LVK- 683 (767)
Q Consensus 607 ~Dfg~a~~~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~-~~~- 683 (767)
+|||.++........... ........||+.|+|||++.+..++.++||||||+++|||++|+.||......... ...
T Consensus 153 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~ 232 (298)
T 1csn_A 153 VDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYER 232 (298)
T ss_dssp CCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHH
T ss_pred EECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHH
Confidence 999999876543221111 11234566999999999999999999999999999999999999999764322110 000
Q ss_pred HhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 684 WVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
......+.... .....+...+.+++.+||+.||++|||++++++.|+++.+...
T Consensus 233 ~~~~~~~~~~~-------------------~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~ 286 (298)
T 1csn_A 233 IGEKKQSTPLR-------------------ELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLN 286 (298)
T ss_dssp HHHHHHHSCHH-------------------HHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred HHhhccCccHH-------------------HHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcC
Confidence 00000000000 0000111122337778999999999999999999999887654
No 104
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=1.7e-40 Score=347.16 Aligned_cols=267 Identities=22% Similarity=0.367 Sum_probs=206.9
Q ss_pred HhcCCCCCCccccccceEEEEEEe------CCCcEEEEEEeeccCC-cchhhHHHHHHHHhcC-CCCCceeEEeeeecCC
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYL------REGISVAVKVLDIEST-GTWKSFFAECEALRNT-RHRNLVKLITSCSSLD 524 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~ 524 (767)
..++|++.+.||+|+||.||+|.+ .+++.||+|++..... ...+.+.+|+++++++ +||||+++++++.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~--- 97 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT--- 97 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC---
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe---
Confidence 346899999999999999999985 2467899999975433 3456788999999999 9999999999964
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCC------------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCC
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKN------------EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLK 592 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~------------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk 592 (767)
.++..++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||++ +|+|||||
T Consensus 98 --~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlk 172 (313)
T 1t46_A 98 --IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLA 172 (313)
T ss_dssp --SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred --cCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCc
Confidence 345569999999999999999865421 1123589999999999999999999999 99999999
Q ss_pred CCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCC
Q 004218 593 PGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPT 671 (767)
Q Consensus 593 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~ 671 (767)
|+||+++.++.+||+|||.++........ .......||+.|+|||++.+..++.++||||+|+++|+|++ |+.||
T Consensus 173 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~ 248 (313)
T 1t46_A 173 ARNILLTHGRITKICDFGLARDIKNDSNY----VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPY 248 (313)
T ss_dssp GGGEEEETTTEEEECCCGGGSCTTSCTTS----EECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred cceEEEcCCCCEEEccccccccccccccc----eeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999866443211 11233457889999999988899999999999999999999 99998
Q ss_pred CCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHH
Q 004218 672 HESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNA 751 (767)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~ 751 (767)
....... ..................++. +.+++.+||+.||++|||+.|++++|+++
T Consensus 249 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~ell~~L~~~ 305 (313)
T 1t46_A 249 PGMPVDS-KFYKMIKEGFRMLSPEHAPAE----------------------MYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305 (313)
T ss_dssp TTCCSSH-HHHHHHHHTCCCCCCTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred Ccccchh-HHHHHhccCCCCCCcccCCHH----------------------HHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence 6543221 112222221111111111111 22367789999999999999999999988
Q ss_pred HHH
Q 004218 752 QKI 754 (767)
Q Consensus 752 ~~~ 754 (767)
...
T Consensus 306 ~~~ 308 (313)
T 1t46_A 306 ISE 308 (313)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 105
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=6.5e-41 Score=354.04 Aligned_cols=296 Identities=22% Similarity=0.298 Sum_probs=201.3
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHH--hcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEAL--RNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l--~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|+.. ++.||||++.... ...+..|.++. ..++||||+++++++..........+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSLD-ERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEEC-CeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 468999999999999999999874 8999999986432 33444555554 45799999999987655445566778
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC------CCCeEeecCCCCCeeeCCCCceE
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDC------EVPIVHCDLKPGNILLDEDMTAK 605 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------~~~ivH~Dlkp~NIl~~~~~~~k 605 (767)
++||||+++|+|.+++.... .++..++.++.|++.||+|||+.. .++|+||||||+||+++.++.+|
T Consensus 88 ~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k 160 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLHT-------SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCV 160 (336)
T ss_dssp EEEECCCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEE
T ss_pred EEEEecCCCCcHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEE
Confidence 99999999999999997544 689999999999999999999752 23899999999999999999999
Q ss_pred EccccchhhhhhhcCCC--ccccccccccCCCCccCccccCC-------CCCCCcccchhhhHHHHHHHhCCCCCCCccc
Q 004218 606 VGDFGLARSLLERIGNQ--SSISSTHVLKGSIGYIPPEYGLG-------EKPSTAGDVYSFGVMLLEIFTGMSPTHESFA 676 (767)
Q Consensus 606 l~Dfg~a~~~~~~~~~~--~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~ 676 (767)
|+|||+++......... ..........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....
T Consensus 161 L~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~ 240 (336)
T 3g2f_A 161 ISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGES 240 (336)
T ss_dssp ECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSC
T ss_pred EeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccc
Confidence 99999998654322111 11112234569999999999887 3556789999999999999999877644322
Q ss_pred CCcchhhHhhhhcccchhhhccHHHHHhh--hcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 677 GEVSLVKWVESNFPKNAQQVLDRELRQLM--MSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
.......+..................... ...+..... .......+.+++.+||+.||++|||++|+++.|+++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~ 319 (336)
T 3g2f_A 241 VPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKE-NSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMI 319 (336)
T ss_dssp CCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCC-CSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCccccc-ccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHH
Confidence 11111000000000000000000000000 000000000 000111233377799999999999999999999999887
Q ss_pred HhhcCCC
Q 004218 755 LLKRRQP 761 (767)
Q Consensus 755 ~~~~~~~ 761 (767)
+.+....
T Consensus 320 ~~~~~~~ 326 (336)
T 3g2f_A 320 WERNKSV 326 (336)
T ss_dssp CCC----
T ss_pred HHhcccC
Confidence 7755443
No 106
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.4e-40 Score=340.09 Aligned_cols=269 Identities=25% Similarity=0.368 Sum_probs=209.8
Q ss_pred cCCCCCC-ccccccceEEEEEEeC---CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 455 GNFSHEN-LIGSGSFGSVYKGYLR---EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 455 ~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
++|.+.+ .||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++. .+
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~ 82 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------AE 82 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE------SS
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec------CC
Confidence 4566666 8999999999999864 47889999997543 234577889999999999999999999963 23
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++++|.+++.... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 83 ~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Df 154 (287)
T 1u59_A 83 ALMLVMEMAGGGPLHKFLVGKR-----EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDF 154 (287)
T ss_dssp SEEEEEECCTTEEHHHHHTTCT-----TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCC
T ss_pred CcEEEEEeCCCCCHHHHHHhCC-----ccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcc
Confidence 4799999999999999996543 3499999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~ 688 (767)
|.+......... ........||+.|+|||++.+..++.++||||+|+++|+|++ |+.||...... .....+...
T Consensus 155 g~~~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~i~~~ 229 (287)
T 1u59_A 155 GLSKALGADDSY---YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQG 229 (287)
T ss_dssp TTCEECTTCSCE---ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHHTT
T ss_pred cceeeeccCcce---eeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHhcC
Confidence 999865432111 111223346889999999988889999999999999999998 99999653221 122222211
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCcc
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLKRRQPNEK 764 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~~~~~~~ 764 (767)
.....+..+++. +.+++.+||+.||++|||+.|++++|+.+..+.......+++
T Consensus 230 ~~~~~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~~~~~ 283 (287)
T 1u59_A 230 KRMECPPECPPE----------------------LYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGHHH 283 (287)
T ss_dssp CCCCCCTTCCHH----------------------HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred CcCCCCCCcCHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcccCCcc
Confidence 111111111221 222667899999999999999999999999988877666554
No 107
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=5e-41 Score=353.24 Aligned_cols=280 Identities=24% Similarity=0.250 Sum_probs=205.2
Q ss_pred hcCCCCCCccccccceEEEEEEe-----CCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL-----REGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
.++|++.+.||+|+||.||+|.+ .+++.||||++........+.+.+|++++++++||||+++++++.. .+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 98 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG---PGR 98 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC---SSS
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec---CCC
Confidence 36899999999999999999984 3588999999976665666779999999999999999999998753 345
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
...++||||+++++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~D 170 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFLQRHRA-----RLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIAD 170 (327)
T ss_dssp CEEEEEEECCTTCBHHHHHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECC
T ss_pred ceEEEEEeecCCCCHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcc
Confidence 678999999999999999976432 389999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||.++....... .........||..|+|||++.+..++.++||||+|+++|+|++|+.||........... ...
T Consensus 171 fg~~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~---~~~ 244 (327)
T 3lxl_A 171 FGLAKLLPLDKD---YYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMM---GCE 244 (327)
T ss_dssp GGGCEECCTTCS---EEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHC---C--
T ss_pred cccceecccCCc---cceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhc---ccc
Confidence 999986543221 11122334578889999999888899999999999999999999999854321100000 000
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
............+...... ....... ..+.+++.+||+.||++|||++|++++|+.+.....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 306 (327)
T 3lxl_A 245 RDVPALSRLLELLEEGQRL--PAPPACP----AEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSR 306 (327)
T ss_dssp --CCHHHHHHHHHHTTCCC--CCCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----
T ss_pred cccccHHHHHHHhhcccCC--CCCCccc----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 0000000000000000000 0000111 122237778999999999999999999998765443
No 108
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=9.4e-41 Score=351.11 Aligned_cols=252 Identities=27% Similarity=0.407 Sum_probs=196.9
Q ss_pred HHHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCC
Q 004218 450 LRRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNT-RHRNLVKLITSCSSLD 524 (767)
Q Consensus 450 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~ 524 (767)
.....++|++.+.||+|+||.||+|+++ +|+.||+|+++.. .....+.+..|.++++.+ +||||+++++++.
T Consensus 12 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~--- 88 (345)
T 1xjd_A 12 IKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQ--- 88 (345)
T ss_dssp ----CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEE---
T ss_pred CCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEE---
Confidence 3455689999999999999999999976 4899999999653 234456778899999876 9999999999954
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCce
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTA 604 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 604 (767)
+...+++||||+++|+|.+++..... +++.++..++.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 89 --~~~~~~lv~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~v 157 (345)
T 1xjd_A 89 --TKENLFFVMEYLNGGDLMYHIQSCHK------FDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHI 157 (345)
T ss_dssp --CSSEEEEEEECCTTCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCE
T ss_pred --eCCEEEEEEeCCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCE
Confidence 45678999999999999999976432 89999999999999999999999 99999999999999999999
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhH
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKW 684 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~ 684 (767)
||+|||+++..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....
T Consensus 158 kL~DFG~a~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~ 229 (345)
T 1xjd_A 158 KIADFGMCKENMLG------DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE--ELFHS 229 (345)
T ss_dssp EECCCTTCBCCCCT------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHH
T ss_pred EEeEChhhhhcccC------CCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH--HHHHH
Confidence 99999999753221 11234567999999999999999999999999999999999999999653221 11111
Q ss_pred hhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHH-HHHH
Q 004218 685 VESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIR-EALR 746 (767)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~-evl~ 746 (767)
+....+ ..+..+++ .+.+++.+||+.||++||++. |+++
T Consensus 230 i~~~~~-~~p~~~s~----------------------~~~~li~~lL~~dp~~R~~~~~~i~~ 269 (345)
T 1xjd_A 230 IRMDNP-FYPRWLEK----------------------EAKDLLVKLFVREPEKRLGVRGDIRQ 269 (345)
T ss_dssp HHHCCC-CCCTTSCH----------------------HHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred HHhCCC-CCCcccCH----------------------HHHHHHHHHhcCCHhHcCCChHHHHc
Confidence 111111 01111111 122366789999999999997 6653
No 109
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1.8e-40 Score=341.05 Aligned_cols=260 Identities=23% Similarity=0.330 Sum_probs=193.6
Q ss_pred HhcCCCCCCccccccceEEEEEEeCC----CcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLRE----GISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
..++|++.+.||+|+||.||+|.+.. +..||+|+..... ....+.+.+|+.++++++||||+++++++.
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------ 86 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------ 86 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc------
Confidence 35689999999999999999999753 4579999986433 234567889999999999999999999863
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
++..++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 87 ~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~ 158 (281)
T 1mp8_A 87 ENPVWIIMELCTLGELRSFLQVRK-----YSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLG 158 (281)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHTT-----TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEEC
T ss_pred cCccEEEEecCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEEC
Confidence 234689999999999999997543 2389999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~ 686 (767)
|||+++........ ......+|+.|+|||++.+..++.++||||+|+++|||++ |..||...... .....+.
T Consensus 159 Dfg~~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~--~~~~~i~ 231 (281)
T 1mp8_A 159 DFGLSRYMEDSTYY-----KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIE 231 (281)
T ss_dssp C------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHH
T ss_pred ccccccccCccccc-----ccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH--HHHHHHH
Confidence 99999876432211 1123346788999999988889999999999999999997 99999654322 1111221
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
..........+++. +.+++.+||+.||++|||+.|+++.|+++....
T Consensus 232 ~~~~~~~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 278 (281)
T 1mp8_A 232 NGERLPMPPNCPPT----------------------LYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 278 (281)
T ss_dssp TTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHH----------------------HHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 11111111111111 222667899999999999999999999987643
No 110
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=3.9e-40 Score=346.71 Aligned_cols=266 Identities=19% Similarity=0.220 Sum_probs=204.4
Q ss_pred hcCCCCCCccccccceEEEEEEe-CCCcEEEEEEeeccCCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL-REGISVAVKVLDIESTGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ..+.+.+|+++++.+ +||||+++++++. .+...
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~-----~~~~~ 80 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGP-----CGKYN 80 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEE-----ETTEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEe-----cCCcc
Confidence 46799999999999999999996 458999999986443 345688999999999 9999999999854 45567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc-----eEE
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT-----AKV 606 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~-----~kl 606 (767)
++||||+ +++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++. +||
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl 151 (330)
T 2izr_A 81 AMVLELL-GPSLEDLFDLCD-----RTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHI 151 (330)
T ss_dssp EEEEECC-CCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEE
T ss_pred EEEEEeC-CCCHHHHHHHcC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEE
Confidence 9999999 899999997642 2499999999999999999999999 9999999999999998887 999
Q ss_pred ccccchhhhhhhcCCCc-cccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcc-hhhH
Q 004218 607 GDFGLARSLLERIGNQS-SISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVS-LVKW 684 (767)
Q Consensus 607 ~Dfg~a~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~-~~~~ 684 (767)
+|||+++.......... .........||+.|+|||++.+..++.++|||||||++|||++|+.||......... ....
T Consensus 152 ~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~ 231 (330)
T 2izr_A 152 IDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQK 231 (330)
T ss_dssp CCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHH
T ss_pred EEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 99999986544322111 111224567999999999999999999999999999999999999999764322110 0000
Q ss_pred h-hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 685 V-ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 685 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
+ ....+... ....+... .+.+++..||+.||.+||+++++.+.|+++.+..
T Consensus 232 i~~~~~~~~~-------------------~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~ 283 (330)
T 2izr_A 232 IGDTKRATPI-------------------EVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK 283 (330)
T ss_dssp HHHHHHHSCH-------------------HHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHhhhccCCH-------------------HHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 0 00000000 00000011 1223777899999999999999999999887654
No 111
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=9.4e-41 Score=366.37 Aligned_cols=259 Identities=24% Similarity=0.382 Sum_probs=204.5
Q ss_pred HHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
...++|++.+.||+|+||.||+|.++++..||||+++... ...+.+.+|++++++++||||+++++++. ....
T Consensus 185 i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~------~~~~ 257 (454)
T 1qcf_A 185 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT------KEPI 257 (454)
T ss_dssp CCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC------SSSC
T ss_pred echHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe------CCcc
Confidence 3456788999999999999999999888999999997543 45678999999999999999999999864 2346
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||+++|+|.+++..... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 258 ~lv~e~~~~g~L~~~l~~~~~----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~ 330 (454)
T 1qcf_A 258 YIITEFMAKGSLLDFLKSDEG----SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGL 330 (454)
T ss_dssp EEEECCCTTCBHHHHHHSHHH----HTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTG
T ss_pred EEEEeecCCCcHHHHHHhccC----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCC
Confidence 999999999999999975431 2388999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhcc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFP 690 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~ 690 (767)
++....... .......++..|+|||++....++.++||||||+++|||++ |+.||...... .....+...+.
T Consensus 331 a~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~--~~~~~i~~~~~ 403 (454)
T 1qcf_A 331 ARVIEDNEY-----TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP--EVIRALERGYR 403 (454)
T ss_dssp GGGBCCHHH-----HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHHTCC
T ss_pred ceEcCCCce-----eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC
Confidence 986533211 11122346788999999988899999999999999999999 99999653221 11122222111
Q ss_pred cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHH
Q 004218 691 KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQK 753 (767)
Q Consensus 691 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 753 (767)
...+..+.+. +.+++.+||+.||++|||++++++.|+.+..
T Consensus 404 ~~~~~~~~~~----------------------l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~ 444 (454)
T 1qcf_A 404 MPRPENCPEE----------------------LYNIMMRCWKNRPEERPTFEYIQSVLDDFYT 444 (454)
T ss_dssp CCCCTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred CCCCCCCCHH----------------------HHHHHHHHccCChhHCcCHHHHHHHHHHHHh
Confidence 1111111111 2226778999999999999999999987654
No 112
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=3e-40 Score=341.44 Aligned_cols=199 Identities=26% Similarity=0.411 Sum_probs=167.8
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC--cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST--GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
++|++.+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|++++++++||||+++++++. ++...
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 76 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH-----SDKKL 76 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEE-----eCCEE
Confidence 57899999999999999999976 489999999965432 33467889999999999999999999954 45678
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||+++ ++.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.
T Consensus 77 ~lv~e~~~~-~l~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~ 147 (292)
T 3o0g_A 77 TLVFEFCDQ-DLKKYFDSCN-----GDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGL 147 (292)
T ss_dssp EEEEECCSE-EHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred EEEEecCCC-CHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeccc
Confidence 999999976 6666655432 2399999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCCC-CCCcccchhhhHHHHHHHhCCCCCCC
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEK-PSTAGDVYSFGVMLLEIFTGMSPTHE 673 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~tg~~p~~~ 673 (767)
++...... .......||+.|+|||++.+.. ++.++||||+||++|+|++|..||..
T Consensus 148 ~~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~ 204 (292)
T 3o0g_A 148 ARAFGIPV------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP 204 (292)
T ss_dssp CEECCSCC------SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC
T ss_pred ceecCCcc------ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcC
Confidence 97653221 1123456899999999987766 79999999999999999999888643
No 113
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.6e-41 Score=353.90 Aligned_cols=253 Identities=25% Similarity=0.384 Sum_probs=191.3
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCC--cchhhHHHHHHHHhcCCC--CCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIEST--GTWKSFFAECEALRNTRH--RNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h--~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+.+++.||||++..... ...+.+.+|++++++++| |||+++++++. .+.
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~-----~~~ 82 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----TDQ 82 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSS
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEe-----eCC
Confidence 467999999999999999999998899999999875432 234678899999999976 99999999954 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||| +.+|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++ ++.+||+||
T Consensus 83 ~~~lv~e-~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DF 151 (343)
T 3dbq_A 83 YIYMVME-CGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDF 151 (343)
T ss_dssp EEEEEEC-CCSEEHHHHHHHSC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCC
T ss_pred EEEEEEe-CCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeec
Confidence 7899999 55789999997643 389999999999999999999999 999999999999997 578999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCC-----------CCCCCcccchhhhHHHHHHHhCCCCCCCcccCC
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-----------EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGE 678 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~ 678 (767)
|+++........ .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.......
T Consensus 152 G~a~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~ 227 (343)
T 3dbq_A 152 GIANQMQPDTTS----VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 227 (343)
T ss_dssp SSSCCC----------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH
T ss_pred ccccccCccccc----ccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHH
Confidence 999865432211 11234569999999999754 678899999999999999999999996532221
Q ss_pred cchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 679 VSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
...........+...+...++. +.+++.+||+.||++|||+.|++++-
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~L~~dp~~Rpt~~e~l~hp 275 (343)
T 3dbq_A 228 SKLHAIIDPNHEIEFPDIPEKD----------------------LQDVLKCCLKRDPKQRISIPELLAHP 275 (343)
T ss_dssp HHHHHHHCTTSCCCCCCCSCHH----------------------HHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred HHHHHHhcCCcccCCcccCCHH----------------------HHHHHHHHcCCChhHCCCHHHHHhCc
Confidence 1122222111111111111111 12367789999999999999998763
No 114
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=2.4e-40 Score=362.66 Aligned_cols=274 Identities=22% Similarity=0.237 Sum_probs=197.1
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc--CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCC-cccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE--STGTWKSFFAECEALRNTRHRNLVKLITSCSSLD-FKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++... .....+++.+|+.+++.++||||+++++++.... .....
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 578999999999999999999976 4899999999644 3334567889999999999999999999976543 23446
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.+++||||+++ ++.+.+.. .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~--------~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DF 208 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF 208 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC
T ss_pred eEEEEEeCCCC-CHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEE
Confidence 78999999976 57766642 289999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... .+...+....
T Consensus 209 G~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~-~~~~i~~~lg 280 (464)
T 3ttj_A 209 GLARTAGTS-------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID-QWNKVIEQLG 280 (464)
T ss_dssp CCC-----C-------CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHC
T ss_pred EeeeecCCC-------cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcC
Confidence 999865432 11234578999999999999999999999999999999999999996532211 1111111100
Q ss_pred --ccchhhhccHHHHHhhhcchh----------------hHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 690 --PKNAQQVLDRELRQLMMSSES----------------QTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 690 --~~~~~~~~~~~l~~~~~~~~~----------------~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
............+..+...+. ............+.+++.+||+.||++|||++|++++
T Consensus 281 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 356 (464)
T 3ttj_A 281 TPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH 356 (464)
T ss_dssp SCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred CCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 000111111112111111000 0001111112334447889999999999999999985
No 115
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=348.47 Aligned_cols=271 Identities=21% Similarity=0.229 Sum_probs=204.0
Q ss_pred hcCCCCCCccccccceEEEEEEe-CCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL-REGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.++|++.+.||+|+||.||+|.. .+++.||||++........+.+.+|+++++.++||||+++++++... .......+
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~~ 106 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRE-RGAKHEAW 106 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE-ETTEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec-cCCCceeE
Confidence 46899999999999999999997 45899999998766556677899999999999999999999987532 12456789
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccch
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLA 612 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 612 (767)
+||||+++|+|.+++...... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+
T Consensus 107 lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~ 181 (317)
T 2buj_A 107 LLLPFFKRGTLWNEIERLKDK--GNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSM 181 (317)
T ss_dssp EEEECCTTCBHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred EEEEeCCCCcHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence 999999999999999764221 34599999999999999999999999 9999999999999999999999999988
Q ss_pred hhhhhhcCCCc---cccccccccCCCCccCccccCCCC---CCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh
Q 004218 613 RSLLERIGNQS---SISSTHVLKGSIGYIPPEYGLGEK---PSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 613 ~~~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~ 686 (767)
........... .........||+.|+|||++.+.. ++.++||||||+++|+|++|+.||...............
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~ 261 (317)
T 2buj_A 182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ 261 (317)
T ss_dssp EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHH
T ss_pred hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhh
Confidence 65432111000 001112345799999999987654 689999999999999999999998543222222221111
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQ 752 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 752 (767)
..........+++ .+.+++.+||+.||++|||++|++++|+.+.
T Consensus 262 ~~~~~~~~~~~~~----------------------~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~ 305 (317)
T 2buj_A 262 NQLSIPQSPRHSS----------------------ALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ 305 (317)
T ss_dssp CC--CCCCTTSCH----------------------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred ccCCCCccccCCH----------------------HHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence 1111111111111 1223677899999999999999999998764
No 116
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=1.4e-40 Score=340.21 Aligned_cols=254 Identities=22% Similarity=0.323 Sum_probs=199.9
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|+++ ++.||||++.... ....+.+.+|++++++++||||+++++++... .....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~~ 84 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSP---PAPHP 84 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTT---TSSSC
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccC---CCCCe
Confidence 367999999999999999999986 8899999997543 23456789999999999999999999997532 23567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEeecCCCCCeeeCCCCceEEccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVP--IVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
++||||+++|+|.+++.... ...+++.+++.++.|++.||+|||++ + |+||||||+||+++.++.++|+||
T Consensus 85 ~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~ 157 (271)
T 3kmu_A 85 TLITHWMPYGSLYNVLHEGT----NFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMA 157 (271)
T ss_dssp EEEEECCTTCBHHHHHHSCS----SCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGG
T ss_pred EeeecccCCCcHHHHHhhcc----cCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEec
Confidence 99999999999999998644 23589999999999999999999998 7 999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCC---cccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPST---AGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~ 686 (767)
|++..... ....||+.|+|||++.+..++. ++||||+|+++|||++|+.||........ ......
T Consensus 158 ~~~~~~~~-----------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~ 225 (271)
T 3kmu_A 158 DVKFSFQS-----------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI-GMKVAL 225 (271)
T ss_dssp GSCCTTSC-----------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH-HHHHHH
T ss_pred cceeeecc-----------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH-HHHHHh
Confidence 88754211 2245789999999988766554 79999999999999999999965322111 111111
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQ 752 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 752 (767)
.......+..+++. +.+++.+||+.||++|||++|+++.|+.+.
T Consensus 226 ~~~~~~~~~~~~~~----------------------~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 226 EGLRPTIPPGISPH----------------------VSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp SCCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred cCCCCCCCCCCCHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 11111112222222 222666899999999999999999998874
No 117
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=2.1e-40 Score=341.89 Aligned_cols=261 Identities=30% Similarity=0.473 Sum_probs=190.8
Q ss_pred HHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCC--cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIEST--GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
...++|++.+.||+|+||.||+|++.. .||+|++..... ...+.+.+|++++++++||||+++++++. ..
T Consensus 21 i~~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~------~~ 92 (289)
T 3og7_A 21 IPDGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST------AP 92 (289)
T ss_dssp CCTTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------SS
T ss_pred cCccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc------CC
Confidence 345789999999999999999998753 599999865432 34567899999999999999999999743 23
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 93 ~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Df 164 (289)
T 3og7_A 93 QLAIVTQWCEGSSLYHHLHASE-----TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDF 164 (289)
T ss_dssp SCEEEEECCCEEEHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCC
T ss_pred ccEEEEEecCCCcHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccc
Confidence 4689999999999999996543 3499999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccC---CCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh-
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL---GEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV- 685 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~- 685 (767)
|.++........ .......||+.|+|||++. +..++.++||||+|+++|+|++|+.||........ ....+
T Consensus 165 g~~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~ 239 (289)
T 3og7_A 165 GLATEKSRWSGS----HQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ-IIEMVG 239 (289)
T ss_dssp C----------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHH-HHHHHH
T ss_pred eecccccccccc----ccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHH-HHHHhc
Confidence 999765432111 1123456899999999986 56788899999999999999999999965432211 11111
Q ss_pred hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHH
Q 004218 686 ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQ 752 (767)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 752 (767)
....+....... ....+ .+.+++.+||+.||++|||++|+++.|+++.
T Consensus 240 ~~~~~~~~~~~~---------------~~~~~----~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 240 RGSLSPDLSKVR---------------SNCPK----RMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp HTSCCCCTTSSC---------------TTSCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred ccccCcchhhcc---------------ccCCH----HHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 111111111000 00011 1222677899999999999999999998764
No 118
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=3e-40 Score=355.90 Aligned_cols=209 Identities=22% Similarity=0.266 Sum_probs=175.8
Q ss_pred hcCCCCCCccccc--cceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 454 TGNFSHENLIGSG--SFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 454 ~~~~~~~~~lg~G--~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
.++|++.+.||+| +||.||+|++. +++.||||++.... ....+.+.+|+++++.++||||+++++++. .+
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~ 98 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFI-----AD 98 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ET
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEE-----EC
Confidence 4689999999999 99999999976 59999999997543 234567888999999999999999999964 45
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
+.+++||||+++|+|.+++.... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~d 171 (389)
T 3gni_B 99 NELWVVTSFMAYGSAKDLICTHF----MDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSG 171 (389)
T ss_dssp TEEEEEEECCTTCBHHHHHHHTC----TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECC
T ss_pred CEEEEEEEccCCCCHHHHHhhhc----ccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcc
Confidence 57899999999999999997653 23499999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCC-CccccccccccCCCCccCccccCC--CCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 609 FGLARSLLERIGN-QSSISSTHVLKGSIGYIPPEYGLG--EKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 609 fg~a~~~~~~~~~-~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
||.+......... ...........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...
T Consensus 172 fg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 240 (389)
T 3gni_B 172 LRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM 240 (389)
T ss_dssp GGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred cccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence 9998654332111 111111233468999999999987 57899999999999999999999999764
No 119
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=9.6e-41 Score=358.36 Aligned_cols=257 Identities=21% Similarity=0.276 Sum_probs=200.5
Q ss_pred HHHHHHhcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecC
Q 004218 448 DELRRATGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSL 523 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 523 (767)
.+++...++|++.+.||+|+||.||+|+++. ++.||+|++... .....+.+.+|+.+++.++||||+++++++.
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~-- 139 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQ-- 139 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEE--
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEE--
Confidence 4455567899999999999999999999764 889999998642 2334456889999999999999999999954
Q ss_pred CcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc
Q 004218 524 DFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT 603 (767)
Q Consensus 524 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~ 603 (767)
+...+++||||++||+|.+++.... +++..+..++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 140 ---~~~~~~lV~E~~~gg~L~~~l~~~~-------~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ 206 (410)
T 3v8s_A 140 ---DDRYLYMVMEYMPGGDLVNLMSNYD-------VPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGH 206 (410)
T ss_dssp ---CSSEEEEEECCCTTEEHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSC
T ss_pred ---ECCEEEEEEeCCCCCcHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCC
Confidence 5567899999999999999997543 89999999999999999999999 9999999999999999999
Q ss_pred eEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCC----CCCcccchhhhHHHHHHHhCCCCCCCcccCCc
Q 004218 604 AKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEK----PSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV 679 (767)
Q Consensus 604 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~ 679 (767)
+||+|||+++...... .......+||+.|+|||++.+.. ++.++||||+||++|||++|+.||.......
T Consensus 207 ikL~DFG~a~~~~~~~-----~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~- 280 (410)
T 3v8s_A 207 LKLADFGTCMKMNKEG-----MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG- 280 (410)
T ss_dssp EEECCCTTCEECCTTS-----EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHH-
T ss_pred EEEeccceeEeeccCC-----cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhh-
Confidence 9999999997653221 11223567999999999987655 7899999999999999999999996532211
Q ss_pred chhhHhhhh--cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCC--CCCHHHHHHH
Q 004218 680 SLVKWVESN--FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGG--RIDIREALRR 747 (767)
Q Consensus 680 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rpt~~evl~~ 747 (767)
......... +.......+++ .+++++.+||..+|.+ ||+++|++++
T Consensus 281 ~~~~i~~~~~~~~~p~~~~~s~----------------------~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 281 TYSKIMNHKNSLTFPDDNDISK----------------------EAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp HHHHHHTHHHHCCCCTTCCCCH----------------------HHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred HHHHHHhccccccCCCcccccH----------------------HHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 111111110 00000011111 1223666899999988 9999999876
No 120
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=4.6e-40 Score=337.27 Aligned_cols=254 Identities=24% Similarity=0.321 Sum_probs=199.9
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++. .+...
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 80 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ 80 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEE-----cCCEE
Confidence 467999999999999999999976 58999999986543 344577889999999999999999999854 45567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||+++++|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~ 151 (276)
T 2yex_A 81 YLFLEYCSGGELFDRIEPDI------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGL 151 (276)
T ss_dssp EEEEECCTTEEGGGGSBTTT------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEEEecCCCcHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCC
Confidence 99999999999999987543 389999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFP 690 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 690 (767)
+........ ........||..|+|||++.+..+ +.++||||+|+++|+|++|+.||............+......
T Consensus 152 ~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~ 227 (276)
T 2yex_A 152 ATVFRYNNR----ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY 227 (276)
T ss_dssp CEECEETTE----ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTT
T ss_pred ccccCCCcc----hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccc
Confidence 976533211 111234568999999999987765 778999999999999999999997654333222222221111
Q ss_pred cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 691 KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 691 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
......+++ .+.+++.+||+.||++|||++|++++
T Consensus 228 ~~~~~~~~~----------------------~~~~li~~~l~~~p~~Rps~~~il~~ 262 (276)
T 2yex_A 228 LNPWKKIDS----------------------APLALLHKILVENPSARITIPDIKKD 262 (276)
T ss_dssp STTGGGSCH----------------------HHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred cCchhhcCH----------------------HHHHHHHHHCCCCchhCCCHHHHhcC
Confidence 111111111 12236778999999999999999874
No 121
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2e-40 Score=353.24 Aligned_cols=264 Identities=25% Similarity=0.400 Sum_probs=193.6
Q ss_pred CCCCCCccccccceEEEEEEeC--C--CcEEEEEEeecc-CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 456 NFSHENLIGSGSFGSVYKGYLR--E--GISVAVKVLDIE-STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 456 ~~~~~~~lg~G~~g~V~~~~~~--~--~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.|++.+.||+|+||.||+|.+. + +..||+|.+... .....+.+.+|+.++++++||||++++++|.. .++.
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~~ 165 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SEGS 165 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECC----CSSC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEc----CCCC
Confidence 4667789999999999999864 2 246899988643 33456789999999999999999999998743 3356
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||+++|+|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 166 ~~lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG 237 (373)
T 3c1x_A 166 PLVVLPYMKHGDLRNFIRNET-----HNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFG 237 (373)
T ss_dssp CEEEEECCTTCBHHHHHHCTT-----CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred eEEEEECCCCCCHHHHHhhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecc
Confidence 689999999999999997643 3388999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
+++........ .........+|+.|+|||++.+..++.++||||||+++|||++ |.+||....... ....+....
T Consensus 238 ~a~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~--~~~~~~~~~ 313 (373)
T 3c1x_A 238 LARDMYDKEFD--SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVYLLQGR 313 (373)
T ss_dssp ----------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSC--HHHHHHTTC
T ss_pred ccccccccccc--cccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHH--HHHHHHcCC
Confidence 99865432211 1111233457889999999998899999999999999999999 667775533222 222221111
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLK 757 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 757 (767)
....+..++.. +.+++.+||+.||++|||++|+++.|+.+...+..
T Consensus 314 ~~~~p~~~~~~----------------------l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~ 359 (373)
T 3c1x_A 314 RLLQPEYCPDP----------------------LYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 359 (373)
T ss_dssp CCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCCCHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccc
Confidence 11111112221 12266789999999999999999999998876553
No 122
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=2.6e-40 Score=339.55 Aligned_cols=265 Identities=26% Similarity=0.378 Sum_probs=205.1
Q ss_pred HhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
..++|++.+.||+|+||.||+|...+++.||+|++.... ...+.+.+|++++++++||||+++++++.. +..+
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~------~~~~ 83 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ------EPIY 83 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSCE
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcC------CCcE
Confidence 346899999999999999999999888899999986433 345788999999999999999999998642 3468
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccch
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLA 612 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 612 (767)
+||||+++++|.+++.... ...+++.++..++.|++.||+|||++ +|+||||||+||++++++.+||+|||.+
T Consensus 84 ~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~ 156 (279)
T 1qpc_A 84 IITEYMENGSLVDFLKTPS----GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLA 156 (279)
T ss_dssp EEEECCTTCBHHHHTTSHH----HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred EEEecCCCCCHHHHHhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCccc
Confidence 9999999999999997543 12389999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhccc
Q 004218 613 RSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPK 691 (767)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~ 691 (767)
....... ........++..|+|||++.+..++.++||||+|+++|||++ |+.||...... .....+......
T Consensus 157 ~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~~~~~~ 229 (279)
T 1qpc_A 157 RLIEDNE-----YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EVIQNLERGYRM 229 (279)
T ss_dssp EECSSSC-----EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCCC
T ss_pred ccccCcc-----cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH--HHHHHHhcccCC
Confidence 7654321 111123446788999999988889999999999999999999 89998653221 111111111111
Q ss_pred chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 004218 692 NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLKRRQ 760 (767)
Q Consensus 692 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~~~ 760 (767)
.....+++ .+.+++.+||+.||++|||++++++.|+++........+
T Consensus 230 ~~~~~~~~----------------------~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~ 276 (279)
T 1qpc_A 230 VRPDNCPE----------------------ELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQYQ 276 (279)
T ss_dssp CCCTTCCH----------------------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC-----
T ss_pred CCcccccH----------------------HHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccCCCC
Confidence 11111111 122367789999999999999999999998876554333
No 123
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=6.1e-41 Score=346.23 Aligned_cols=258 Identities=26% Similarity=0.417 Sum_probs=197.1
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-C-------cEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-G-------ISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF 525 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 525 (767)
.++|++.+.||+|+||.||+|.+.. + ..||+|++........+.+.+|++++++++||||+++++++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~---- 82 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCV---- 82 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEEC----
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEE----
Confidence 4678999999999999999998653 3 579999997666666788999999999999999999999964
Q ss_pred ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc--
Q 004218 526 KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT-- 603 (767)
Q Consensus 526 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~-- 603 (767)
.+...++||||+++|+|.+++.... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 83 -~~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~ 153 (289)
T 4fvq_A 83 -CGDENILVQEFVKFGSLDTYLKKNK-----NCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRK 153 (289)
T ss_dssp -CTTCCEEEEECCTTCBHHHHHHHTG-----GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGG
T ss_pred -eCCCCEEEEECCCCCCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCccc
Confidence 3445699999999999999997643 2389999999999999999999999 9999999999999998876
Q ss_pred ------eEEccccchhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCccc
Q 004218 604 ------AKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFA 676 (767)
Q Consensus 604 ------~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~ 676 (767)
+||+|||.+...... ....||+.|+|||++.+ ..++.++||||+|+++|||++|..|+.....
T Consensus 154 ~~~~~~~kl~Dfg~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~ 223 (289)
T 4fvq_A 154 TGNPPFIKLSDPGISITVLPK----------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALD 223 (289)
T ss_dssp GTBCCEEEECCCCSCTTTSCH----------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred ccccceeeeccCcccccccCc----------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccc
Confidence 999999999654221 23457889999999887 6789999999999999999996655433211
Q ss_pred CCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 677 GEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
... ......... .......+ .+.+++.+||+.||++|||++|++++|+++.....
T Consensus 224 ~~~-~~~~~~~~~--~~~~~~~~----------------------~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~ 278 (289)
T 4fvq_A 224 SQR-KLQFYEDRH--QLPAPKAA----------------------ELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL 278 (289)
T ss_dssp HHH-HHHHHHTTC--CCCCCSSC----------------------TTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred hHH-HHHHhhccC--CCCCCCCH----------------------HHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence 111 111111000 00000010 01226778999999999999999999998766544
Q ss_pred hcC
Q 004218 757 KRR 759 (767)
Q Consensus 757 ~~~ 759 (767)
..+
T Consensus 279 ~~~ 281 (289)
T 4fvq_A 279 VPR 281 (289)
T ss_dssp ---
T ss_pred CCC
Confidence 433
No 124
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=6.5e-40 Score=338.60 Aligned_cols=252 Identities=26% Similarity=0.366 Sum_probs=195.5
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
..|++.+.||+|+||.||+|.+. ++..||+|++.... ....+.+.+|+.++++++||||+++++++... ......+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~ 104 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCI 104 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccc-cCCCceE
Confidence 34778889999999999999975 48899999986442 33456788999999999999999999987542 2345778
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEeecCCCCCeeeC-CCCceEEcc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVP--IVHCDLKPGNILLD-EDMTAKVGD 608 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~-~~~~~kl~D 608 (767)
++||||+++|+|.+++.... .+++..++.++.|++.||+|||+. + |+||||||+||+++ .++.+||+|
T Consensus 105 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~D 175 (290)
T 1t4h_A 105 VLVTELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGD 175 (290)
T ss_dssp EEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECC
T ss_pred EEEEEecCCCCHHHHHHHcc------CCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEee
Confidence 99999999999999997643 289999999999999999999998 7 99999999999998 789999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||++...... ......||+.|+|||++.+ .++.++||||+|+++|+|++|+.||.................
T Consensus 176 fg~~~~~~~~--------~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~ 246 (290)
T 1t4h_A 176 LGLATLKRAS--------FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGV 246 (290)
T ss_dssp TTGGGGCCTT--------SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTC
T ss_pred CCCccccccc--------ccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccC
Confidence 9999654221 1233568999999998764 589999999999999999999999965322211111111111
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.+........+. +.+++.+||+.||++|||++|++++
T Consensus 247 ~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~ell~h 283 (290)
T 1t4h_A 247 KPASFDKVAIPE----------------------VKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp CCGGGGGCCCHH----------------------HHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred CccccCCCCCHH----------------------HHHHHHHHccCChhhCCCHHHHhhC
Confidence 111111111111 2236778999999999999999874
No 125
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=9.5e-41 Score=365.88 Aligned_cols=265 Identities=28% Similarity=0.407 Sum_probs=202.6
Q ss_pred HhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
..++|++.+.||+|+||.||+|.+.++..||||+++... ...+.+.+|++++++++||||+++++++.. +..+
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------~~~~ 254 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EPIY 254 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSCE
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC------CceE
Confidence 346788999999999999999999888889999997543 345789999999999999999999998642 3469
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccch
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLA 612 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 612 (767)
+||||+++|+|.+++.... +..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 255 iv~e~~~~gsL~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a 327 (452)
T 1fmk_A 255 IVTEYMSKGSLLDFLKGET----GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLA 327 (452)
T ss_dssp EEECCCTTCBHHHHHSHHH----HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTT
T ss_pred EEehhhcCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccc
Confidence 9999999999999997532 23489999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhccc
Q 004218 613 RSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPK 691 (767)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~ 691 (767)
+........ ......++..|+|||++.+..++.++||||||+++|||++ |+.||...... .....+......
T Consensus 328 ~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~--~~~~~i~~~~~~ 400 (452)
T 1fmk_A 328 RLIEDNEYT-----ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--EVLDQVERGYRM 400 (452)
T ss_dssp C-------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCCC
T ss_pred eecCCCcee-----cccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCCC
Confidence 865432111 1123346788999999988899999999999999999999 99998653221 111222221111
Q ss_pred chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 004218 692 NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLKRRQ 760 (767)
Q Consensus 692 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~~~ 760 (767)
..+..+++. +.+++.+||+.||++|||++++++.|+.+.......-+
T Consensus 401 ~~~~~~~~~----------------------l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~~~ 447 (452)
T 1fmk_A 401 PCPPECPES----------------------LHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQ 447 (452)
T ss_dssp CCCTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCCC
T ss_pred CCCCCCCHH----------------------HHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCcccc
Confidence 111111111 22267789999999999999999999887654443333
No 126
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=3.2e-40 Score=348.19 Aligned_cols=202 Identities=26% Similarity=0.361 Sum_probs=174.9
Q ss_pred HhcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeecc---CCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIE---STGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~ 527 (767)
..++|++.+.||+|+||.||+|+.+. ++.||+|++... .....+.+.+|.++++.+ +||+|+++++++ ..
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----~~ 92 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----QT 92 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEE-----EC
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEE-----Ec
Confidence 45789999999999999999999875 889999999654 234456788999999988 899999999985 45
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
....|+||||++||+|.+++..... +++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 93 ~~~~~lv~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~ 163 (353)
T 2i0e_A 93 MDRLYFVMEYVNGGDLMYHIQQVGR------FKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIA 163 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEEC
T ss_pred CCEEEEEEeCCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEE
Confidence 5678999999999999999976442 99999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
|||+++..... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 164 DFG~a~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~ 224 (353)
T 2i0e_A 164 DFGMCKENIWD------GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE 224 (353)
T ss_dssp CCTTCBCCCCT------TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eCCcccccccC------CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC
Confidence 99999753211 11234567999999999999999999999999999999999999999653
No 127
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=4.5e-40 Score=345.18 Aligned_cols=249 Identities=25% Similarity=0.326 Sum_probs=187.6
Q ss_pred hcCCCCCCccccccceEEEEEEe----CCCcEEEEEEeeccC----CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL----REGISVAVKVLDIES----TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF 525 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 525 (767)
.++|++.+.||+|+||.||+|+. .+++.||+|++.... ......+.+|+++++.++||||+++++++.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---- 91 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQ---- 91 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEE----
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEE----
Confidence 46899999999999999999997 368999999986432 234456789999999999999999999954
Q ss_pred ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceE
Q 004218 526 KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAK 605 (767)
Q Consensus 526 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~k 605 (767)
..+..++||||+++|+|.+++.... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+|
T Consensus 92 -~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~k 161 (327)
T 3a62_A 92 -TGGKLYLILEYLSGGELFMQLEREG------IFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVK 161 (327)
T ss_dssp -CSSCEEEEEECCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEE
T ss_pred -cCCEEEEEEeCCCCCcHHHHHHhCC------CCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEE
Confidence 4567799999999999999997643 289999999999999999999999 999999999999999999999
Q ss_pred EccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh
Q 004218 606 VGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV 685 (767)
Q Consensus 606 l~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~ 685 (767)
|+|||+++...... .......||+.|+|||++.+..++.++||||+|+++|+|++|+.||....... ......
T Consensus 162 l~Dfg~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~ 234 (327)
T 3a62_A 162 LTDFGLCKESIHDG------TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK-TIDKIL 234 (327)
T ss_dssp ECCCSCC----------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHH
T ss_pred EEeCCcccccccCC------ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH-HHHHHH
Confidence 99999997543221 11234568999999999999899999999999999999999999996532211 011111
Q ss_pred hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCC-----CHHHHHHH
Q 004218 686 ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRI-----DIREALRR 747 (767)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~ 747 (767)
.... ..+..+++ .+.+++.+||+.||++|| ++.|++++
T Consensus 235 ~~~~--~~p~~~~~----------------------~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h 277 (327)
T 3a62_A 235 KCKL--NLPPYLTQ----------------------EARDLLKKLLKRNAASRLGAGPGDAGEVQAH 277 (327)
T ss_dssp HTCC--CCCTTSCH----------------------HHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred hCCC--CCCCCCCH----------------------HHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence 1100 01111111 122366789999999999 77888764
No 128
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=4e-40 Score=347.67 Aligned_cols=246 Identities=23% Similarity=0.300 Sum_probs=197.8
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|++. +|+.||+|++... .....+.+.+|+++++.++||||+++++++. +..
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~ 114 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFK-----DNS 114 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----cCC
Confidence 367999999999999999999976 5899999998643 2344567889999999999999999999854 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.+++||||+++|+|.+++..... +++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 115 ~~~lv~e~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DF 185 (350)
T 1rdq_E 115 NLYMVMEYVAGGEMFSHLRRIGR------FSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDF 185 (350)
T ss_dssp EEEEEEECCTTCBHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred EEEEEEcCCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEccc
Confidence 78999999999999999976432 89999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+....
T Consensus 186 g~a~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~ 254 (350)
T 1rdq_E 186 GFAKRVKGR---------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI--QIYEKIVSGK 254 (350)
T ss_dssp TTCEECSSC---------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC
T ss_pred ccceeccCC---------cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHH--HHHHHHHcCC
Confidence 999765321 23456899999999999999999999999999999999999999653211 1111111100
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCC-----HHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRID-----IREALRR 747 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt-----~~evl~~ 747 (767)
. ..+..+++. +.+++.+||+.||++||+ ++|++++
T Consensus 255 ~-~~p~~~~~~----------------------~~~li~~lL~~dp~~R~~~~~~~~~ei~~h 294 (350)
T 1rdq_E 255 V-RFPSHFSSD----------------------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNH 294 (350)
T ss_dssp C-CCCTTCCHH----------------------HHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred C-CCCCCCCHH----------------------HHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence 0 011111111 223677899999999998 8888764
No 129
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=5e-40 Score=338.45 Aligned_cols=250 Identities=25% Similarity=0.393 Sum_probs=197.4
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++. ....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 79 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EESF 79 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEE-----cCCE
Confidence 578999999999999999999976 48999999986543 234567889999999999999999999964 4556
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc---eEEc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT---AKVG 607 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~---~kl~ 607 (767)
.++||||+++++|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++. +||+
T Consensus 80 ~~~v~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~ 150 (284)
T 3kk8_A 80 HYLVFDLVTGGELFEDIVARE------FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLA 150 (284)
T ss_dssp EEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEEC
T ss_pred EEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEe
Confidence 799999999999999887654 389999999999999999999999 9999999999999986655 9999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh-
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE- 686 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~- 686 (767)
|||.+....... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||...... .....+.
T Consensus 151 Dfg~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~ 221 (284)
T 3kk8_A 151 DFGLAIEVNDSE-------AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQIKA 221 (284)
T ss_dssp CCTTCEECCSSC-------BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH
T ss_pred eceeeEEcccCc-------cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh--HHHHHHHh
Confidence 999997543221 123356899999999999999999999999999999999999999653221 1111111
Q ss_pred hhc--ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 687 SNF--PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 687 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
... +......+++. +.+++.+||+.||++|||++|++++-
T Consensus 222 ~~~~~~~~~~~~~~~~----------------------~~~li~~~l~~dp~~Rps~~~~l~h~ 263 (284)
T 3kk8_A 222 GAYDYPSPEWDTVTPE----------------------AKSLIDSMLTVNPKKRITADQALKVP 263 (284)
T ss_dssp TCCCCCTTTTTTSCHH----------------------HHHHHHHHSCSSTTTSCCHHHHTTSH
T ss_pred ccccCCchhhcccCHH----------------------HHHHHHHHcccChhhCCCHHHHhcCc
Confidence 111 11111111111 22366789999999999999999853
No 130
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=5.1e-40 Score=340.93 Aligned_cols=265 Identities=25% Similarity=0.388 Sum_probs=201.1
Q ss_pred hcCCCCCCccccccceEEEEEEeCC----CcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE----GISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
..+|++.+.||+|+||.||+|.+.+ ...||+|.+.... ....+.+.+|+.++++++||||+++++++.. .+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~ 99 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SE 99 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SS
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEc----CC
Confidence 4578889999999999999999643 3368999886432 2345678899999999999999999998643 34
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
...++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 100 ~~~~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~D 171 (298)
T 3f66_A 100 GSPLVVLPYMKHGDLRNFIRNET-----HNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVAD 171 (298)
T ss_dssp SCCEEEEECCTTCBHHHHHHCTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECS
T ss_pred CceEEEEeCCCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECc
Confidence 56789999999999999997543 3489999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhC-CCCCCCcccCCcchhhHhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTG-MSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg-~~p~~~~~~~~~~~~~~~~~ 687 (767)
||.++........ .........||+.|+|||.+.+..++.++||||+|+++|+|++| .+||....... .......
T Consensus 172 fg~a~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~--~~~~~~~ 247 (298)
T 3f66_A 172 FGLARDMYDKEYY--SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVYLLQ 247 (298)
T ss_dssp CGGGCCCSCGGGC--BC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTT--HHHHHHT
T ss_pred ccccccccccchh--ccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHH--HHHHHhc
Confidence 9999865433211 11122344578899999999988999999999999999999994 55554432221 1111111
Q ss_pred hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 688 NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
......+..+++. +.+++.+||+.||++|||++|+++.|+++.+.+.
T Consensus 248 ~~~~~~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~ 294 (298)
T 3f66_A 248 GRRLLQPEYCPDP----------------------LYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 294 (298)
T ss_dssp TCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCccCCHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence 1111111112211 2226678999999999999999999999877543
No 131
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=355.33 Aligned_cols=345 Identities=17% Similarity=0.162 Sum_probs=270.8
Q ss_pred cEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecC
Q 004218 5 VYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGF 84 (767)
Q Consensus 5 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 84 (767)
+.++.++++++ .+|..+. +++++|+|++|++.+..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 57888899998 8998764 4789999999999988788899999999999999999987888899999999999999
Q ss_pred ccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCC
Q 004218 85 NKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYN 164 (767)
Q Consensus 85 n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 164 (767)
|++...+. ..+.++++|++|+|++|++++..|..+..+++ |++|++++|++.+..+..|.++++|++|+|++|
T Consensus 90 n~l~~~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 90 NRLKLIPL------GVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp SCCCSCCT------TSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CcCCccCc------ccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 98875432 24567788888888888888777777777777 888888888887777777888888888888888
Q ss_pred cCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCCh
Q 004218 165 SISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPK 244 (767)
Q Consensus 165 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 244 (767)
.+++..+..+..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+..+..+....+|+.|++++|+++
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----- 237 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT----- 237 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-----
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-----
Confidence 887666666777788888888888777666667777777777777777665555554444445666666555554
Q ss_pred hhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCC
Q 004218 245 EILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKG 324 (767)
Q Consensus 245 ~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 324 (767)
+..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|..+++
T Consensus 238 --------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 238 --------------------AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp --------------------SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred --------------------ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 333456677788888888888888887888888889999999999988888888888999
Q ss_pred ceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCCccccccccccccCCcCccc
Q 004218 325 LEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~~c~ 385 (767)
|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..+.+.......+.++.+.|.
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~ 358 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCA 358 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEE
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeC
Confidence 9999999999987777778888999999999999887665444444444456677777775
No 132
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=5.1e-40 Score=339.18 Aligned_cols=262 Identities=26% Similarity=0.412 Sum_probs=208.3
Q ss_pred HHhcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
...++|++.+.||+|+||.||+|.+.. +..||+|++... ....+.+.+|++++++++||||+++++++. ....
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~ 83 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-----REPP 83 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----SSSS
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCC
Confidence 346789999999999999999999775 889999998643 345678899999999999999999999954 4456
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||+++++|.+++.... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 84 ~~~v~e~~~~~~L~~~~~~~~----~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg 156 (288)
T 3kfa_A 84 FYIITEFMTYGNLLDYLRECN----RQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFG 156 (288)
T ss_dssp EEEEEECCTTEEHHHHHHHCC----TTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred EEEEEEcCCCCcHHHHHHhcc----cCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCc
Confidence 799999999999999997643 24489999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
.+....... ........+|+.|+|||++.+..++.++||||+|+++|+|++ |..||...... ..........
T Consensus 157 ~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~--~~~~~~~~~~ 229 (288)
T 3kfa_A 157 LSRLMTGDT-----YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEKDY 229 (288)
T ss_dssp GGGTSCSSS-----SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHTTC
T ss_pred cceeccCCc-----cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhccC
Confidence 998654321 112233456888999999988899999999999999999999 99998653222 2222222222
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
.......+++. +.+++.+||+.||++|||++|+++.|+.+....
T Consensus 230 ~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~ 273 (288)
T 3kfa_A 230 RMERPEGCPEK----------------------VYELMRACWQWNPSDRPSFAEIHQAFETMFQES 273 (288)
T ss_dssp CCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHH----------------------HHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhc
Confidence 22112222221 222667899999999999999999999876543
No 133
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=4.8e-40 Score=349.35 Aligned_cols=249 Identities=24% Similarity=0.283 Sum_probs=187.1
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ...+.+.+|+.+++.++||||+++++++. .....+
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~~~ 92 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVIL-----TPTHLA 92 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEe-----eCCEEE
Confidence 468999999999999999999976 58999999996433 33467889999999999999999999964 455679
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc--eEEcccc
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT--AKVGDFG 610 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~--~kl~Dfg 610 (767)
+||||+++|+|.+++..... +++.++..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||
T Consensus 93 lv~e~~~~~~L~~~l~~~~~------~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg 163 (361)
T 3uc3_A 93 IIMEYASGGELYERICNAGR------FSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFG 163 (361)
T ss_dssp EEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCC
T ss_pred EEEEeCCCCCHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecC
Confidence 99999999999999976442 99999999999999999999999 9999999999999987665 9999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCc-ccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh--
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTA-GDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES-- 687 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-- 687 (767)
+++..... .......||+.|+|||++.+..++.+ +||||+||++|+|++|+.||........ .......
T Consensus 164 ~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~-~~~~~~~~~ 235 (361)
T 3uc3_A 164 YSKSSVLH-------SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRD-YRKTIQRIL 235 (361)
T ss_dssp CC----------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCC-HHHHHHHHH
T ss_pred cccccccc-------CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHH-HHHHHHHHh
Confidence 99743221 11233468999999999988777655 8999999999999999999976433221 1111111
Q ss_pred --hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 688 --NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 688 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.+.......+++ .+.+++.+||+.||++|||+.|++++
T Consensus 236 ~~~~~~~~~~~~s~----------------------~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 236 SVKYSIPDDIRISP----------------------ECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp TTCCCCCTTSCCCH----------------------HHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred cCCCCCCCcCCCCH----------------------HHHHHHHHHccCChhHCcCHHHHHhC
Confidence 000000001111 12236778999999999999999886
No 134
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=6.6e-40 Score=343.55 Aligned_cols=252 Identities=25% Similarity=0.363 Sum_probs=198.0
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCc------chhhHHHHHHHHhcCCCCCceeEEeeeecCCcc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTG------TWKSFFAECEALRNTRHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 526 (767)
.++|++.+.||+|+||.||+|.+. +|+.||+|++...... ..+.+.+|++++++++||||+++++++.
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 85 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYE----- 85 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEe-----
Confidence 467999999999999999999976 4899999998654322 3567899999999999999999999954
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC----
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM---- 602 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~---- 602 (767)
.....++||||+++++|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 86 ~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~ 156 (321)
T 2a2a_A 86 NRTDVVLILELVSGGELFDFLAQKE------SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIP 156 (321)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHTCS------CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSC
T ss_pred cCCEEEEEEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcC
Confidence 4566799999999999999997643 389999999999999999999999 999999999999999887
Q ss_pred ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchh
Q 004218 603 TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLV 682 (767)
Q Consensus 603 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~ 682 (767)
.+||+|||.+....... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||....... ...
T Consensus 157 ~~kl~Dfg~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~ 228 (321)
T 2a2a_A 157 HIKLIDFGLAHEIEDGV-------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLA 228 (321)
T ss_dssp CEEECCCTTCEECCTTC-------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHH
T ss_pred CEEEccCccceecCccc-------cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHH-HHH
Confidence 79999999997654321 1133468999999999999999999999999999999999999996532111 011
Q ss_pred hHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 683 KWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
......+.. +... .......+.+++.+||+.||++|||+.|++++
T Consensus 229 ~i~~~~~~~------~~~~--------------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h 273 (321)
T 2a2a_A 229 NITSVSYDF------DEEF--------------FSHTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (321)
T ss_dssp HHHTTCCCC------CHHH--------------HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred HHHhccccc------Chhh--------------hcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 111100000 0000 00111123347779999999999999999874
No 135
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=5.3e-40 Score=343.87 Aligned_cols=274 Identities=24% Similarity=0.303 Sum_probs=193.9
Q ss_pred hcCCCCC-CccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHE-NLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.+.|++. +.||+|+||.||+|.+. +++.||||++........+.+.+|+++++++ +||||+++++++. ..+.
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~-----~~~~ 85 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFE-----EEDR 85 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEe-----eCCE
Confidence 3578874 78999999999999965 5899999999766666677899999999985 7999999999954 4567
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc---eEEc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT---AKVG 607 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~---~kl~ 607 (767)
.++||||+++|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++. +||+
T Consensus 86 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~ 156 (316)
T 2ac3_A 86 FYLVFEKMRGGSILSHIHKRR------HFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKIC 156 (316)
T ss_dssp EEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEEC
T ss_pred EEEEEEcCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEE
Confidence 899999999999999997653 389999999999999999999999 9999999999999998765 9999
Q ss_pred cccchhhhhhhcCCC-ccccccccccCCCCccCccccCC-----CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcch
Q 004218 608 DFGLARSLLERIGNQ-SSISSTHVLKGSIGYIPPEYGLG-----EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSL 681 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~ 681 (767)
|||++.......... ..........||+.|+|||++.+ ..++.++||||+||++|+|++|+.||..........
T Consensus 157 Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~ 236 (316)
T 2ac3_A 157 DFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGW 236 (316)
T ss_dssp CTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC
T ss_pred EccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccc
Confidence 999997654321111 11111233458999999999865 457899999999999999999999997654322110
Q ss_pred hhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 682 VKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
. ...........+...+.......+. .....+...+.+++.+||+.||++|||++|++++
T Consensus 237 ~---~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 296 (316)
T 2ac3_A 237 D---RGEACPACQNMLFESIQEGKYEFPD---KDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH 296 (316)
T ss_dssp -------CCHHHHHHHHHHHHHCCCCCCH---HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred c---ccccchhHHHHHHHHHhccCcccCc---hhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 0 0000000000000000000000000 0001112223347779999999999999999884
No 136
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=1.1e-39 Score=338.23 Aligned_cols=271 Identities=21% Similarity=0.270 Sum_probs=202.8
Q ss_pred HHhcCCCCCCccccccceEEEEEEe-CCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYL-REGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
...++|++.+.||+|+||.||+|.+ .+++.||||++.... ..+.+.+|+++++.++|++++..+.++. .....
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~ 79 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDY 79 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEE----EETTE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeec----CCCCc
Confidence 3457899999999999999999997 458999999875432 3356889999999999988888877763 34567
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee---CCCCceEEc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL---DEDMTAKVG 607 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~ 607 (767)
.++||||+ +++|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||++ +.++.+||+
T Consensus 80 ~~lv~e~~-~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~ 150 (296)
T 4hgt_A 80 NVMVMELL-GPSLEDLFNFCS-----RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYII 150 (296)
T ss_dssp EEEEEECC-CCBHHHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEEC
T ss_pred eEEEEEcc-CCCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEe
Confidence 79999999 889999997533 2399999999999999999999999 99999999999999 788999999
Q ss_pred cccchhhhhhhcCCCc-cccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc-c-hhhH
Q 004218 608 DFGLARSLLERIGNQS-SISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV-S-LVKW 684 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~-~-~~~~ 684 (767)
|||.++.......... .........||+.|+|||++.+..++.++||||+||++|+|++|+.||........ . ....
T Consensus 151 Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~ 230 (296)
T 4hgt_A 151 DFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERI 230 (296)
T ss_dssp CCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHH
T ss_pred cCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhh
Confidence 9999987654322111 11122345689999999999999999999999999999999999999976433221 1 1111
Q ss_pred hhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 685 VESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
.....+..... ....+...+.+++.+||+.||++|||++|+++.|+++.....
T Consensus 231 ~~~~~~~~~~~-------------------~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~ 283 (296)
T 4hgt_A 231 SEKKMSTPIEV-------------------LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp HHHHHHSCHHH-------------------HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred hcccccchhhh-------------------hhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 11111100000 000001122237778999999999999999999999887665
No 137
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.4e-40 Score=343.70 Aligned_cols=269 Identities=25% Similarity=0.344 Sum_probs=205.3
Q ss_pred HHhcCCCCCC-ccccccceEEEEEEeC---CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc
Q 004218 452 RATGNFSHEN-LIGSGSFGSVYKGYLR---EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF 525 (767)
Q Consensus 452 ~~~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 525 (767)
...++|++.+ .||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++.++||||+++++++.
T Consensus 13 ~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~---- 88 (291)
T 1xbb_A 13 LDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE---- 88 (291)
T ss_dssp CCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE----
T ss_pred ecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC----
Confidence 3456788888 9999999999999643 36889999986543 223567899999999999999999999862
Q ss_pred ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceE
Q 004218 526 KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAK 605 (767)
Q Consensus 526 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~k 605 (767)
.+..++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 89 --~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~k 157 (291)
T 1xbb_A 89 --AESWMLVMEMAELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAK 157 (291)
T ss_dssp --SSSEEEEEECCTTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEE
T ss_pred --CCCcEEEEEeCCCCCHHHHHHhCc------CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEE
Confidence 345689999999999999997643 389999999999999999999999 999999999999999999999
Q ss_pred EccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhH
Q 004218 606 VGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKW 684 (767)
Q Consensus 606 l~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~ 684 (767)
|+|||++......... ........+++.|+|||.+.+..++.++||||||+++|+|++ |+.||...... .....
T Consensus 158 l~Dfg~~~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~ 232 (291)
T 1xbb_A 158 ISDFGLSKALRADENY---YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAM 232 (291)
T ss_dssp ECCCTTCEECCTTCSE---EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHH
T ss_pred EccCCcceeeccCCCc---ccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHH
Confidence 9999999765432211 111122346788999999988888999999999999999999 99998653221 11112
Q ss_pred hhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCC
Q 004218 685 VESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLKRRQPN 762 (767)
Q Consensus 685 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~~~~~ 762 (767)
+...........+++. +.+++.+||+.||++|||+.|+++.|+++........++.
T Consensus 233 ~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~~~~~ 288 (291)
T 1xbb_A 233 LEKGERMGCPAGCPRE----------------------MYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNEGHHH 288 (291)
T ss_dssp HHTTCCCCCCTTCCHH----------------------HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCCCCCCCCCCHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhhccccc
Confidence 2111111111111211 2236778999999999999999999999988777655543
No 138
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=3.2e-40 Score=338.62 Aligned_cols=254 Identities=30% Similarity=0.413 Sum_probs=196.1
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLAL 533 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 533 (767)
.++|++.+.||+|+||.||+|.+. |+.||||++... ...+.+.+|++++++++||||+++++++.. .....++
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~~~l 92 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLYI 92 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECC----C--CCEE
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEc----CCCceEE
Confidence 468999999999999999999986 889999998643 345778999999999999999999998642 3346799
Q ss_pred EEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 534 VYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 534 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
||||+++|+|.+++..... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+.
T Consensus 93 v~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~ 165 (278)
T 1byg_A 93 VTEYMAKGSLVDYLRSRGR----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTK 165 (278)
T ss_dssp EECCCTTEEHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred EEecCCCCCHHHHHHhccc----ccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccccc
Confidence 9999999999999975431 2378999999999999999999999 99999999999999999999999999997
Q ss_pred hhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhcccc
Q 004218 614 SLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPKN 692 (767)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~ 692 (767)
...... ....++..|+|||++.+..++.++||||+|+++|+|++ |+.||...... .....+.......
T Consensus 166 ~~~~~~---------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~~~~~~~~ 234 (278)
T 1byg_A 166 EASSTQ---------DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRVEKGYKMD 234 (278)
T ss_dssp -------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHHTTTCCCC
T ss_pred cccccc---------cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhcCCCCC
Confidence 543321 22347889999999988889999999999999999998 99998654221 1112221111111
Q ss_pred hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 693 AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 693 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
....+++. +.+++.+||+.||++|||+.|+++.|+.++..
T Consensus 235 ~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 235 APDGCPPA----------------------VYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp CCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CcccCCHH----------------------HHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 11111221 22266689999999999999999999998764
No 139
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=8.8e-40 Score=341.13 Aligned_cols=268 Identities=25% Similarity=0.357 Sum_probs=196.5
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC---CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES---TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|++++++++||||+++++++. ..+
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~ 105 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFI-----EDN 105 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETT
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----cCC
Confidence 467999999999999999999964 58999999986432 234567889999999999999999999964 345
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++|+|.+++...... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 106 ~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Df 180 (310)
T 2wqm_A 106 ELNIVLELADAGDLSRMIKHFKKQ--KRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDL 180 (310)
T ss_dssp EEEEEEECCCSCBHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC
T ss_pred cEEEEEecCCCCCHHHHHHHhccc--ccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEec
Confidence 679999999999999999753211 23489999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh-h
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES-N 688 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-~ 688 (767)
|++........ ......|+..|+|||++.+..++.++||||||+++|+|++|+.||.............+.. .
T Consensus 181 g~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~ 254 (310)
T 2wqm_A 181 GLGRFFSSKTT------AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD 254 (310)
T ss_dssp ------------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTC
T ss_pred cceeeecCCCc------cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhccc
Confidence 99976543211 1123468999999999999999999999999999999999999986533222122111111 1
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLKRR 759 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~~ 759 (767)
++......+++. +.+++.+||+.||++|||++|+++.|+++......+-
T Consensus 255 ~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~~ 303 (310)
T 2wqm_A 255 YPPLPSDHYSEE----------------------LRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASSL 303 (310)
T ss_dssp SCCCCTTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC---
T ss_pred CCCCcccccCHH----------------------HHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhhh
Confidence 111111111111 2226678999999999999999999999988766543
No 140
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=2e-40 Score=355.98 Aligned_cols=251 Identities=25% Similarity=0.381 Sum_probs=190.4
Q ss_pred cCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCC--cchhhHHHHHHHHhcCC--CCCceeEEeeeecCCccccee
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIEST--GTWKSFFAECEALRNTR--HRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~~~~~~~ 530 (767)
.+|++.+.||+|+||.||+|...+++.||||++..... ...+.+.+|++++++++ ||||+++++++. ....
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~-----~~~~ 130 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----TDQY 130 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEe-----cCCE
Confidence 45999999999999999999988899999999865432 34567899999999996 599999999864 3456
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
+++||| +.+++|.+++.... .+++.++..++.||+.||+|||+. +|+||||||+||+++ ++.+||+|||
T Consensus 131 ~~lv~E-~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG 199 (390)
T 2zmd_A 131 IYMVME-CGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFG 199 (390)
T ss_dssp EEEEEE-CCSEEHHHHHHHCS------SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCS
T ss_pred EEEEEe-cCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecC
Confidence 899999 56789999997644 389999999999999999999999 999999999999995 5899999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCC-----------CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-----------EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV 679 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~ 679 (767)
+++........ .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........
T Consensus 200 ~a~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~ 275 (390)
T 2zmd_A 200 IANQMQPDTTS----VVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS 275 (390)
T ss_dssp SSCCC-------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH
T ss_pred ccccccCCCcc----ccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHH
Confidence 99865432111 11234569999999999864 3688899999999999999999999965322111
Q ss_pred chhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 680 SLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.+............+...+. .+.+++.+||+.||++|||+.|++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 276 KLHAIIDPNHEIEFPDIPEK----------------------DLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp HHHHHHCTTSCCCCCCCSCH----------------------HHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHhCccccCCCCccchH----------------------HHHHHHHHHcccChhhCCCHHHHhhC
Confidence 11111111111111111111 12237778999999999999999875
No 141
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=3e-40 Score=343.38 Aligned_cols=275 Identities=26% Similarity=0.369 Sum_probs=200.7
Q ss_pred hcCCCCCCccccccceEEEEEEe-----CCCcEEEEEEeecc-CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL-----REGISVAVKVLDIE-STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
.++|++.+.||+|+||.||+|++ .+++.||+|++... .....+.+.+|+++++.++||||+++++++.. ..
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~ 96 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE---DG 96 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEec---CC
Confidence 35688999999999999999984 35889999998644 33445788999999999999999999999763 23
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
...+++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 97 ~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~ 168 (302)
T 4e5w_A 97 GNGIKLIMEFLPSGSLKEYLPKNK-----NKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIG 168 (302)
T ss_dssp -CCEEEEEECCTTCBHHHHHHHHT-----TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEEC
T ss_pred CceEEEEEEeCCCCcHHHHHHhcc-----ccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEEC
Confidence 356799999999999999996543 2399999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~ 687 (767)
|||.+........ .........||..|+|||++.+..++.++||||+|+++|+|++|+.|+...... ....
T Consensus 169 Dfg~~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~~~~ 239 (302)
T 4e5w_A 169 DFGLTKAIETDKE---YYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMAL------FLKM 239 (302)
T ss_dssp CCTTCEECCTTCC---EEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH------HHHH
T ss_pred cccccccccCCCc---ceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhH------Hhhc
Confidence 9999986543321 111223455788899999998888999999999999999999999986432110 0000
Q ss_pred hcccchhhhccHHHHHhhhcch-hhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHH
Q 004218 688 NFPKNAQQVLDRELRQLMMSSE-SQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQ 752 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 752 (767)
..+................... .......+ .+.+++.+||+.||++|||+.|+++.|+.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 240 IGPTHGQMTVTRLVNTLKEGKRLPCPPNCPD----EVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HCSCCGGGHHHHHHHHHHTTCCCCCCTTCCH----HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHhccCCCCCCCCCCH----HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 0010000000000010000000 00001111 2223777999999999999999999998764
No 142
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=346.42 Aligned_cols=246 Identities=26% Similarity=0.287 Sum_probs=186.4
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC--cchhhHHHHHHHHhcC-CCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST--GTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||+||+|.+. +++.||||++..... .....+..|+..+.++ +||||+++++++. .++
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~-----~~~ 130 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWE-----EGG 130 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETT
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEE-----eCC
Confidence 367999999999999999999986 699999999854322 2334455666655554 8999999999964 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+ +++|.+++.... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 131 ~~~lv~e~~-~~~L~~~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DF 201 (311)
T 3p1a_A 131 ILYLQTELC-GPSLQQHCEAWG-----ASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDF 201 (311)
T ss_dssp EEEEEEECC-CCBHHHHHHHHC-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCC
T ss_pred EEEEEEecc-CCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccc
Confidence 789999999 669999887653 3499999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|++....... ......||+.|+|||++.+ .++.++|||||||++|||++|..|+.... ..........
T Consensus 202 G~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~----~~~~~~~~~~ 269 (311)
T 3p1a_A 202 GLLVELGTAG-------AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE----GWQQLRQGYL 269 (311)
T ss_dssp TTCEECC-------------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH----HHHHHTTTCC
T ss_pred eeeeecccCC-------CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc----HHHHHhccCC
Confidence 9987653321 1233458999999999876 78999999999999999999977653311 1111111111
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
+...... +...+.+++.+||+.||++|||++|++++
T Consensus 270 ~~~~~~~----------------------~~~~l~~li~~~L~~dP~~Rpt~~ell~h 305 (311)
T 3p1a_A 270 PPEFTAG----------------------LSSELRSVLVMMLEPDPKLRATAEALLAL 305 (311)
T ss_dssp CHHHHTT----------------------SCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred CcccccC----------------------CCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence 1111111 11122337778999999999999999863
No 143
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=1.6e-40 Score=347.96 Aligned_cols=249 Identities=23% Similarity=0.258 Sum_probs=171.8
Q ss_pred CCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCC-CCCceeEEeeeecCCcccceeeEEEEee
Q 004218 460 ENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTR-HRNLVKLITSCSSLDFKNMEFLALVYEF 537 (767)
Q Consensus 460 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~~lv~e~ 537 (767)
.+.||+|+||.||+|.+. +++.||||++... ....+.+|+.+++.+. ||||+++++++. +....++||||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~-----~~~~~~lv~e~ 87 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFH-----DQLHTFLVMEL 87 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSEEEEEECC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEE-----cCCEEEEEEEc
Confidence 378999999999999976 5899999998643 3466789999999997 999999999954 45677999999
Q ss_pred cCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC---ceEEccccchhh
Q 004218 538 LGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM---TAKVGDFGLARS 614 (767)
Q Consensus 538 ~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~---~~kl~Dfg~a~~ 614 (767)
+++|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||+++.
T Consensus 88 ~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~ 158 (325)
T 3kn6_A 88 LNGGELFERIKKKK------HFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARL 158 (325)
T ss_dssp CCSCBHHHHHHHCS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEE
T ss_pred cCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEecccccee
Confidence 99999999997643 399999999999999999999999 999999999999998665 899999999975
Q ss_pred hhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc--chhhHhhhhcccc
Q 004218 615 LLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV--SLVKWVESNFPKN 692 (767)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~ 692 (767)
..... .......||+.|+|||++.+..++.++||||+|+++|+|++|+.||........ .............
T Consensus 159 ~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~ 232 (325)
T 3kn6_A 159 KPPDN------QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGD 232 (325)
T ss_dssp CCC----------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTC
T ss_pred cCCCC------CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCC
Confidence 43221 112345689999999999999999999999999999999999999976432210 1111110000000
Q ss_pred hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 693 AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 693 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
... .......+...+.+++.+||+.||++|||++|++++
T Consensus 233 ------------~~~----~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 271 (325)
T 3kn6_A 233 ------------FSF----EGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN 271 (325)
T ss_dssp ------------CCC----CSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred ------------CCC----CcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence 000 000001111223337778999999999999998754
No 144
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=5.9e-40 Score=345.98 Aligned_cols=267 Identities=24% Similarity=0.401 Sum_probs=204.8
Q ss_pred hcCCCCCCccccccceEEEEEEeC--------CCcEEEEEEeeccCC-cchhhHHHHHHHHhcC-CCCCceeEEeeeecC
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR--------EGISVAVKVLDIEST-GTWKSFFAECEALRNT-RHRNLVKLITSCSSL 523 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~ 523 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|+++++++ +||||+++++++.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-- 111 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-- 111 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC--
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc--
Confidence 478999999999999999999863 467899999965432 3456788999999999 8999999999964
Q ss_pred CcccceeeEEEEeecCCCChhhhhcccCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCC
Q 004218 524 DFKNMEFLALVYEFLGNGSLGDWIHGERKNE----------HGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKP 593 (767)
Q Consensus 524 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp 593 (767)
..+..++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||+. +|+||||||
T Consensus 112 ---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 185 (334)
T 2pvf_A 112 ---QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA 185 (334)
T ss_dssp ---SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred ---cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCcc
Confidence 3456799999999999999998654211 123489999999999999999999999 999999999
Q ss_pred CCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCC
Q 004218 594 GNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTH 672 (767)
Q Consensus 594 ~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~ 672 (767)
+||+++.++.+||+|||.++....... ........+|+.|+|||++.+..++.++||||+|+++|+|++ |+.||.
T Consensus 186 ~NIll~~~~~~kL~Dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~ 261 (334)
T 2pvf_A 186 RNVLVTENNVMKIADFGLARDINNIDY----YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP 261 (334)
T ss_dssp GGEEECTTCCEEECCCTTCEECTTTSS----EECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred ceEEEcCCCCEEEcccccccccccccc----ccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcC
Confidence 999999999999999999976543211 111223456788999999988889999999999999999999 999986
Q ss_pred CcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHH
Q 004218 673 ESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQ 752 (767)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 752 (767)
..... .....+...........+... +.+++.+||+.||++|||+.|+++.|+.+.
T Consensus 262 ~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~ell~~L~~l~ 317 (334)
T 2pvf_A 262 GIPVE--ELFKLLKEGHRMDKPANCTNE----------------------LYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 317 (334)
T ss_dssp TCCHH--HHHHHHHHTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cCCHH--HHHHHHhcCCCCCCCccCCHH----------------------HHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 53211 111111111111111111111 222667899999999999999999999987
Q ss_pred HHHh
Q 004218 753 KILL 756 (767)
Q Consensus 753 ~~~~ 756 (767)
....
T Consensus 318 ~~~~ 321 (334)
T 2pvf_A 318 TLTT 321 (334)
T ss_dssp HHHC
T ss_pred hccc
Confidence 6544
No 145
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=349.36 Aligned_cols=274 Identities=18% Similarity=0.194 Sum_probs=198.1
Q ss_pred hcCCCCCCccccccceEEEEEEeC----CCcEEEEEEeeccCCc-----------chhhHHHHHHHHhcCCCCCceeEEe
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR----EGISVAVKVLDIESTG-----------TWKSFFAECEALRNTRHRNLVKLIT 518 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv~~~~ 518 (767)
.++|++.+.||+|+||.||+|.+. ++..||+|++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 367999999999999999999975 4788999998654321 1234667888999999999999999
Q ss_pred eeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee
Q 004218 519 SCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL 598 (767)
Q Consensus 519 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~ 598 (767)
++... +.+....++||||+ +++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||++
T Consensus 116 ~~~~~-~~~~~~~~lv~e~~-~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 184 (345)
T 2v62_A 116 SGLTE-FKGRSYRFMVMERL-GIDLQKISGQNG------TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLL 184 (345)
T ss_dssp EEEEE-SSSCEEEEEEEECE-EEEHHHHCBGGG------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred ccccc-cCCCcEEEEEEecc-CCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEE
Confidence 97542 23467889999999 999999997654 399999999999999999999999 99999999999999
Q ss_pred CCCC--ceEEccccchhhhhhhcCCC-ccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcc
Q 004218 599 DEDM--TAKVGDFGLARSLLERIGNQ-SSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESF 675 (767)
Q Consensus 599 ~~~~--~~kl~Dfg~a~~~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~ 675 (767)
+.++ .+||+|||+++.+....... ..........||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 185 ~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~ 264 (345)
T 2v62_A 185 GYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNL 264 (345)
T ss_dssp ESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGT
T ss_pred ccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence 8877 99999999998765432211 11122244579999999999999899999999999999999999999996432
Q ss_pred cCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHH
Q 004218 676 AGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQ 752 (767)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 752 (767)
.......... .... ......+...... ....+ .+.+++.+||+.||++|||++|+++.|+.+.
T Consensus 265 ~~~~~~~~~~-~~~~----~~~~~~~~~~~~~-----~~~~~----~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 265 KDPVAVQTAK-TNLL----DELPQSVLKWAPS-----GSSCC----EIAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp TCHHHHHHHH-HHHH----HTTTHHHHHHSCT-----TSCCH----HHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred cccHHHHHHH-Hhhc----ccccHHHHhhccc-----cccHH----HHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 2221111111 0000 0011111111100 00111 2223777899999999999999999997653
No 146
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=6.2e-40 Score=337.07 Aligned_cols=260 Identities=25% Similarity=0.367 Sum_probs=200.9
Q ss_pred HhcCCCCCCccccccceEEEEEEeCC----CcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLRE----GISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
..++|++.+.||+|+||.||+|.+.. +..||+|.+.... ....+.+.+|+++++.++||||+++++++..
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~----- 84 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE----- 84 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-----
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-----
Confidence 34689999999999999999998643 3469999986542 2345778999999999999999999998642
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
+..++||||+++++|.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 85 -~~~~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~ 155 (281)
T 3cc6_A 85 -EPTWIIMELYPYGELGHYLERNK-----NSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLG 155 (281)
T ss_dssp -SSCEEEEECCTTCBHHHHHHHHT-----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEEC
T ss_pred -CCCEEEEecCCCCCHHHHHHhcc-----ccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeC
Confidence 23489999999999999997643 3389999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~ 686 (767)
|||.+......... ......+++.|+|||++.+..++.++||||||+++|+|++ |+.||....... ....+.
T Consensus 156 Dfg~~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~--~~~~~~ 228 (281)
T 3cc6_A 156 DFGLSRYIEDEDYY-----KASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKD--VIGVLE 228 (281)
T ss_dssp CCCGGGCC--------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGG--HHHHHH
T ss_pred ccCCCccccccccc-----ccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHH--HHHHHh
Confidence 99999865432111 1123456888999999988889999999999999999998 999996532221 111111
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
..........+++. +.+++.+||+.||++|||+.|++++|+.+.+..
T Consensus 229 ~~~~~~~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~ 275 (281)
T 3cc6_A 229 KGDRLPKPDLCPPV----------------------LYTLMTRCWDYDPSDRPRFTELVCSLSDVYQME 275 (281)
T ss_dssp HTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHH----------------------HHHHHHHHccCCchhCcCHHHHHHHHHHHHHhh
Confidence 11111111111211 223677899999999999999999999987654
No 147
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=4.7e-40 Score=350.62 Aligned_cols=245 Identities=25% Similarity=0.339 Sum_probs=189.2
Q ss_pred CCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEEEEeec
Q 004218 460 ENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLALVYEFL 538 (767)
Q Consensus 460 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~ 538 (767)
.+.||+|+||.||+|... +|+.||+|++........+.+.+|++++++++||||+++++++. ..+..++||||+
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~lv~E~~ 168 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFE-----SKNDIVLVMEYV 168 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSEEEEEEECC
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEE-----ECCEEEEEEeCC
Confidence 567999999999999975 58999999997665556678999999999999999999999964 445679999999
Q ss_pred CCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee--CCCCceEEccccchhhhh
Q 004218 539 GNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL--DEDMTAKVGDFGLARSLL 616 (767)
Q Consensus 539 ~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~--~~~~~~kl~Dfg~a~~~~ 616 (767)
++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++...
T Consensus 169 ~~~~L~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~ 240 (373)
T 2x4f_A 169 DGGELFDRIIDES-----YNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYK 240 (373)
T ss_dssp TTCEEHHHHHHTG-----GGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECC
T ss_pred CCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecC
Confidence 9999999886543 2389999999999999999999999 99999999999999 577899999999998654
Q ss_pred hhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhccc--chh
Q 004218 617 ERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPK--NAQ 694 (767)
Q Consensus 617 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~--~~~ 694 (767)
... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..+.......+.. ...
T Consensus 241 ~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-~~~~~i~~~~~~~~~~~~ 312 (373)
T 2x4f_A 241 PRE-------KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA-ETLNNILACRWDLEDEEF 312 (373)
T ss_dssp TTC-------BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHTCCCSCSGGG
T ss_pred Ccc-------ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhccCCCChhhh
Confidence 321 122346899999999999888999999999999999999999999653221 1111111111110 000
Q ss_pred hhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 695 QVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 695 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..++ + .+.+++.+||+.||++|||+.|++++
T Consensus 313 ~~~~------------------~----~~~~li~~~L~~dp~~Rps~~e~l~h 343 (373)
T 2x4f_A 313 QDIS------------------E----EAKEFISKLLIKEKSWRISASEALKH 343 (373)
T ss_dssp TTSC------------------H----HHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ccCC------------------H----HHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 1111 1 12237779999999999999999983
No 148
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=2.9e-40 Score=365.82 Aligned_cols=256 Identities=26% Similarity=0.427 Sum_probs=203.6
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
..+|++.+.||+|+||.||+|.+.. +..||||++.... ...+.+.+|++++++++||||++++++|. ....++
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~-----~~~~~~ 292 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCT-----REPPFY 292 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-----SSSSCE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEe-----cCCcEE
Confidence 4568889999999999999999875 8899999996443 34678999999999999999999999964 344579
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccch
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLA 612 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 612 (767)
+||||+++|+|.+++.... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 293 lv~E~~~~g~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a 365 (495)
T 1opk_A 293 IITEFMTYGNLLDYLRECN----RQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLS 365 (495)
T ss_dssp EEEECCTTCBHHHHHHHSC----TTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCE
T ss_pred EEEEccCCCCHHHHHHhcC----cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccc
Confidence 9999999999999997643 23489999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhccc
Q 004218 613 RSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPK 691 (767)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~ 691 (767)
+...... ........++..|+|||++.+..++.++|||||||++|||++ |+.||...... .....+...+..
T Consensus 366 ~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~~~~~~~~~~~~ 438 (495)
T 1opk_A 366 RLMTGDT-----YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEKDYRM 438 (495)
T ss_dssp ECCTTCC-----EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHTTCCC
T ss_pred eeccCCc-----eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCCC
Confidence 8653321 111123346788999999988889999999999999999999 99998654321 222222222222
Q ss_pred chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHH
Q 004218 692 NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNA 751 (767)
Q Consensus 692 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~ 751 (767)
..+..+.+. +.+++.+||+.||++|||+.|+++.|+.+
T Consensus 439 ~~~~~~~~~----------------------l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 439 ERPEGCPEK----------------------VYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp CCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCCCCCCHH----------------------HHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 112222221 12266789999999999999999999865
No 149
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.5e-40 Score=342.73 Aligned_cols=261 Identities=20% Similarity=0.233 Sum_probs=193.4
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC---cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST---GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
..++|++.+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|+.++++++||||+++++++. .+
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~ 106 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGE-----ID 106 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ET
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEe-----eC
Confidence 3578999999999999999999976 588999999865422 22467889999999999999999999964 35
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
+..++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 107 ~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~D 177 (309)
T 2h34_A 107 GQLYVDMRLINGVDLAAMLRRQG------PLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVD 177 (309)
T ss_dssp TEEEEEEECCCCEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECS
T ss_pred CeEEEEEEecCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEec
Confidence 56799999999999999997643 389999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||++........ .......|++.|+|||++.+..++.++||||||+++|+|++|+.||...... .........
T Consensus 178 fg~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~ 250 (309)
T 2h34_A 178 FGIASATTDEKL-----TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQA 250 (309)
T ss_dssp CCC---------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSC
T ss_pred CccCcccccccc-----ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccC
Confidence 999976543211 1123446899999999999999999999999999999999999999653221 111111111
Q ss_pred ccc--chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCC-CHHHHHHHHHHHHHHHh
Q 004218 689 FPK--NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRI-DIREALRRLKNAQKILL 756 (767)
Q Consensus 689 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-t~~evl~~L~~~~~~~~ 756 (767)
.+. .....+++ .+.+++.+||+.||++|| |++++++.|+.+.....
T Consensus 251 ~~~~~~~~~~~~~----------------------~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~ 299 (309)
T 2h34_A 251 IPRPSTVRPGIPV----------------------AFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD 299 (309)
T ss_dssp CCCGGGTSTTCCT----------------------HHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred CCCccccCCCCCH----------------------HHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence 111 00111111 122366789999999999 99999999987754443
No 150
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.4e-40 Score=344.00 Aligned_cols=260 Identities=24% Similarity=0.353 Sum_probs=197.0
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcE----EEEEEeecc-CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GIS----VAVKVLDIE-STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~----vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
.++|++.+.||+|+||.||+|.+.. ++. ||+|.+... .....+.+.+|+.++++++||||+++++++...
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~---- 89 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS---- 89 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESS----
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecC----
Confidence 4689999999999999999999653 443 577776433 344567899999999999999999999997532
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
..++|+||+++|+|.+++.... ..+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 90 --~~~~v~~~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~ 159 (327)
T 3lzb_A 90 --TVQLITQLMPFGCLLDYVREHK-----DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKIT 159 (327)
T ss_dssp --SEEEEECCCSSCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEEC
T ss_pred --CceEEEEecCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEc
Confidence 2589999999999999997643 2389999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~ 686 (767)
|||+++......... ......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...... .....+.
T Consensus 160 DfG~a~~~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~ 233 (327)
T 3lzb_A 160 DFGLAKLLGAEEKEY----HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILE 233 (327)
T ss_dssp CTTC--------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHH
T ss_pred cCcceeEccCccccc----cccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHH
Confidence 999998764432211 1123446788999999999999999999999999999999 99999664322 2222222
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
.............. +.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus 234 ~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 280 (327)
T 3lzb_A 234 KGERLPQPPICTID----------------------VYMIMRKCWMIDADSRPKFRELIIEFSKMARDP 280 (327)
T ss_dssp TTCCCCCCTTBCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred cCCCCCCCccCCHH----------------------HHHHHHHHcCCChhHCcCHHHHHHHHHHHHhCc
Confidence 22111112222221 122667899999999999999999999987443
No 151
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=356.28 Aligned_cols=211 Identities=26% Similarity=0.333 Sum_probs=178.9
Q ss_pred CHHHHHHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeee
Q 004218 446 SYDELRRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCS 521 (767)
Q Consensus 446 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~ 521 (767)
.+++.+...++|++.+.||+|+||.||+|+.+ +|+.||+|++... .....+.+.+|..++..++||||+++++++
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~- 130 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF- 130 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE-
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE-
Confidence 44555666789999999999999999999976 5999999999643 223445688999999999999999999985
Q ss_pred cCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC
Q 004218 522 SLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED 601 (767)
Q Consensus 522 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~ 601 (767)
.+...+|+||||+++|+|.+++.... ..+++..+..++.||+.||+|||++ +|+||||||+||+++.+
T Consensus 131 ----~~~~~~~lVmE~~~gg~L~~~l~~~~-----~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~ 198 (412)
T 2vd5_A 131 ----QDENYLYLVMEYYVGGDLLTLLSKFG-----ERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRC 198 (412)
T ss_dssp ----ECSSEEEEEECCCCSCBHHHHHHHHS-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred ----eeCCEEEEEEcCCCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCC
Confidence 45567899999999999999997643 2399999999999999999999999 99999999999999999
Q ss_pred CceEEccccchhhhhhhcCCCccccccccccCCCCccCccccC-------CCCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 602 MTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL-------GEKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 602 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+.+||+|||+++....... ......+||+.|+|||++. +..++.++||||+||++|||++|+.||...
T Consensus 199 g~vkL~DFGla~~~~~~~~-----~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~ 273 (412)
T 2vd5_A 199 GHIRLADFGSCLKLRADGT-----VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYAD 273 (412)
T ss_dssp SCEEECCCTTCEECCTTSC-----EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred CCEEEeechhheeccCCCc-----cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCC
Confidence 9999999999976533211 1123457999999999986 456899999999999999999999999653
No 152
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1.2e-39 Score=334.35 Aligned_cols=252 Identities=27% Similarity=0.328 Sum_probs=198.6
Q ss_pred HhcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
..++|++.+.||+|+||.||+|.+.. +..||+|++........+.+.+|++++++++||||+++++++. .....
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~ 81 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE-----DNTDI 81 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCeE
Confidence 35679999999999999999999765 7799999998766666788999999999999999999999964 45667
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee---CCCCceEEcc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL---DEDMTAKVGD 608 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~D 608 (767)
++||||+++++|.+++..... +++.+++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|
T Consensus 82 ~lv~e~~~~~~L~~~~~~~~~------~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~D 152 (277)
T 3f3z_A 82 YLVMELCTGGELFERVVHKRV------FRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLID 152 (277)
T ss_dssp EEEEECCCSCBHHHHHHHHCS------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECC
T ss_pred EEEEeccCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEe
Confidence 999999999999999876442 89999999999999999999999 99999999999999 7889999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||.+....... ......||+.|+|||++.+. ++.++||||+|+++|+|++|+.||....... .........
T Consensus 153 fg~~~~~~~~~-------~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~ 223 (277)
T 3f3z_A 153 FGLAARFKPGK-------MMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSE-VMLKIREGT 223 (277)
T ss_dssp CTTCEECCTTS-------CBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCC
T ss_pred cccceeccCcc-------chhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCC
Confidence 99997653321 12334689999999998654 8999999999999999999999996532211 111111111
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
...... ...... ..+.+++.+||+.||++|||+.|++++
T Consensus 224 ~~~~~~----------------~~~~~~----~~~~~li~~~l~~dp~~R~s~~~~l~h 262 (277)
T 3f3z_A 224 FTFPEK----------------DWLNVS----PQAESLIRRLLTKSPKQRITSLQALEH 262 (277)
T ss_dssp CCCCHH----------------HHTTSC----HHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred CCCCch----------------hhhcCC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 110000 000011 122236778999999999999999874
No 153
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=1e-39 Score=335.16 Aligned_cols=249 Identities=24% Similarity=0.351 Sum_probs=195.4
Q ss_pred HhcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
+.++|++.+.||+|+||.||+|.+.. ++.||+|++... .....+.+.+|++++++++||||+++++++. +.
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 81 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH-----DA 81 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CS
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEe-----cC
Confidence 35689999999999999999999764 779999998543 2233567889999999999999999999964 44
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
...++||||+++|+|.+++..... +++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 82 ~~~~lv~e~~~~~~l~~~l~~~~~------~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~D 152 (279)
T 3fdn_A 82 TRVYLILEYAPLGTVYRELQKLSK------FDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIAD 152 (279)
T ss_dssp SEEEEEECCCTTEEHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECS
T ss_pred CEEEEEEecCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEe
Confidence 567999999999999999976543 89999999999999999999998 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||++...... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||....... ....+..
T Consensus 153 fg~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~- 221 (279)
T 3fdn_A 153 FGWSVHAPSS--------RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE--TYKRISR- 221 (279)
T ss_dssp CCEESCC----------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH--HHHHHHH-
T ss_pred ccccccCCcc--------cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH--HHHHHHh-
Confidence 9998644322 1133468999999999999999999999999999999999999996532111 1111110
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
.....+..+.+. +.+++.+||+.||++|||++|++++-
T Consensus 222 ~~~~~~~~~~~~----------------------~~~li~~~l~~~p~~Rps~~e~l~h~ 259 (279)
T 3fdn_A 222 VEFTFPDFVTEG----------------------ARDLISRLLKHNPSQRPMLREVLEHP 259 (279)
T ss_dssp TCCCCCTTSCHH----------------------HHHHHHHHCCSSGGGSCCHHHHHHCH
T ss_pred CCCCCCCcCCHH----------------------HHHHHHHHhccChhhCCCHHHHhhCc
Confidence 000111111111 22367789999999999999999873
No 154
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=2.1e-39 Score=348.98 Aligned_cols=252 Identities=21% Similarity=0.317 Sum_probs=188.8
Q ss_pred hcCCCCC-CccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHh-cCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHE-NLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALR-NTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~-~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|.+. +.||+|+||.||+|.+. +++.||||++.. ...+.+|++++. ..+||||+++++++... ..+...
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~-~~~~~~ 133 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC 133 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeec-ccCCcE
Confidence 3567666 68999999999999976 589999999852 245678888874 45899999999986431 234567
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC---CCceEEc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE---DMTAKVG 607 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~ 607 (767)
+++||||+++|+|.+++.... ...+++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+
T Consensus 134 ~~lv~E~~~gg~L~~~l~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~ 206 (400)
T 1nxk_A 134 LLIVMECLDGGELFSRIQDRG----DQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLT 206 (400)
T ss_dssp EEEEEECCCSEEHHHHHHCC-------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEEC
T ss_pred EEEEEEeCCCCcHHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEE
Confidence 899999999999999997643 23499999999999999999999999 9999999999999997 7899999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc--chhhHh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV--SLVKWV 685 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~--~~~~~~ 685 (767)
|||+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||........ .....+
T Consensus 207 DFG~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i 279 (400)
T 1nxk_A 207 DFGFAKETTSH-------NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRI 279 (400)
T ss_dssp CCTTCEECC------------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHH
T ss_pred ecccccccCCC-------CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHH
Confidence 99999754321 112345689999999999999999999999999999999999999976433221 111111
Q ss_pred -hhhc--ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 686 -ESNF--PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 686 -~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
...+ +......+.+ .+.+++.+||+.||++|||+.|++++
T Consensus 280 ~~~~~~~~~~~~~~~s~----------------------~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 280 RMGQYEFPNPEWSEVSE----------------------EVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp HHTCCCCCTTTTTTSCH----------------------HHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HcCcccCCCcccccCCH----------------------HHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 1111 1100111111 12237779999999999999999986
No 155
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=3.6e-40 Score=345.30 Aligned_cols=276 Identities=24% Similarity=0.360 Sum_probs=211.5
Q ss_pred CHHHHHHHhcCCCCCCccccccceEEEEEEe------CCCcEEEEEEeeccCC-cchhhHHHHHHHHhcC-CCCCceeEE
Q 004218 446 SYDELRRATGNFSHENLIGSGSFGSVYKGYL------REGISVAVKVLDIEST-GTWKSFFAECEALRNT-RHRNLVKLI 517 (767)
Q Consensus 446 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~ 517 (767)
...+.....++|++.+.||+|+||.||+|.+ .+++.||||++..... ...+.+.+|+++++++ +||||++++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 97 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence 4445555678999999999999999999984 2468899999965433 2346788999999999 799999999
Q ss_pred eeeecCCcccceeeEEEEeecCCCChhhhhcccCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 004218 518 TSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNE----------HGNGLNFLERLNIAIDIASALDYLHNDCEVPIV 587 (767)
Q Consensus 518 ~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iv 587 (767)
+++.. .+..+++||||+++|+|.+++....... ....+++..++.++.|++.||+|||++ +|+
T Consensus 98 ~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~ 170 (316)
T 2xir_A 98 GACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCI 170 (316)
T ss_dssp EEECC----TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred EEEec----CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 99743 3345799999999999999998654210 012388999999999999999999999 999
Q ss_pred eecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-
Q 004218 588 HCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT- 666 (767)
Q Consensus 588 H~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t- 666 (767)
||||||+||+++.++.+||+|||.++....... ........||+.|+|||++.+..++.++||||+|+++|+|++
T Consensus 171 H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~ 246 (316)
T 2xir_A 171 HRDLAARNILLSEKNVVKICDFGLARDIYKDPD----YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSL 246 (316)
T ss_dssp CSCCSGGGEEECGGGCEEECCCGGGSCTTTCTT----SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred cccCccceEEECCCCCEEECCCccccccccCcc----ceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999976543211 112234457889999999988899999999999999999998
Q ss_pred CCCCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 004218 667 GMSPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALR 746 (767)
Q Consensus 667 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~ 746 (767)
|+.||........ ....+............++. +.+++.+||+.||++|||+.|+++
T Consensus 247 g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~ell~ 303 (316)
T 2xir_A 247 GASPYPGVKIDEE-FCRRLKEGTRMRAPDYTTPE----------------------MYQTMLDCWHGEPSQRPTFSELVE 303 (316)
T ss_dssp SCCSSTTCCCSHH-HHHHHHHTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CCCCCcccchhHH-HHHHhccCccCCCCCCCCHH----------------------HHHHHHHHcCCChhhCcCHHHHHH
Confidence 9999865432211 11111111111111112221 122666899999999999999999
Q ss_pred HHHHHHHHH
Q 004218 747 RLKNAQKIL 755 (767)
Q Consensus 747 ~L~~~~~~~ 755 (767)
+|+.+....
T Consensus 304 ~L~~~~~~~ 312 (316)
T 2xir_A 304 HLGNLLQAN 312 (316)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999987654
No 156
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-39 Score=343.23 Aligned_cols=263 Identities=26% Similarity=0.410 Sum_probs=196.9
Q ss_pred cCCCCCCccccccceEEEEEEeCC-----CcEEEEEEeeccCC-cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLRE-----GISVAVKVLDIEST-GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
.+|++.+.||+|+||.||+|.+.. +..||||++..... .....+.+|++++++++||||+++++++. ..
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 118 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVIS-----KY 118 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SS
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEe-----cC
Confidence 567778999999999999998653 24699999865432 34457889999999999999999999964 45
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
...++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 119 ~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~D 190 (333)
T 1mqb_A 119 KPMMIITEYMENGALDKFLREKD-----GEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSD 190 (333)
T ss_dssp SSEEEEEECCTTEEHHHHHHHTT-----TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECC
T ss_pred CCcEEEEeCCCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECC
Confidence 56799999999999999997542 3489999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~ 687 (767)
||.++......... .......+|..|+|||++.+..++.++||||||+++|||++ |+.||...... .....+..
T Consensus 191 fg~~~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~--~~~~~~~~ 265 (333)
T 1mqb_A 191 FGLSRVLEDDPEAT---YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH--EVMKAIND 265 (333)
T ss_dssp CCC--------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHT
T ss_pred CCcchhhccccccc---cccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHHC
Confidence 99998764432111 11122346788999999998899999999999999999999 99998653221 11111111
Q ss_pred hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 004218 688 NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLK 757 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 757 (767)
.........+.+. +.+++.+||+.||++|||+.|+++.|+++.+....
T Consensus 266 ~~~~~~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~ 313 (333)
T 1mqb_A 266 GFRLPTPMDCPSA----------------------IYQLMMQCWQQERARRPKFADIVSILDKLIRAPDS 313 (333)
T ss_dssp TCCCCCCTTCBHH----------------------HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGG
T ss_pred CCcCCCcccCCHH----------------------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchh
Confidence 1111111111111 22267789999999999999999999998765443
No 157
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=8.8e-40 Score=360.01 Aligned_cols=204 Identities=27% Similarity=0.351 Sum_probs=159.4
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+++.+|+++++.++||||+++++++..........
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 368999999999999999999976 58999999986432 234567889999999999999999999987655566678
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
+|+||||++ |+|.+++.... .+++..+..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||
T Consensus 132 ~~lv~e~~~-~~L~~~~~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFG 201 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRTPV------YLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFG 201 (458)
T ss_dssp EEEEECCCS-EEHHHHHHSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEeccc-cchhhhcccCC------CCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccc
Confidence 899999985 69999997643 399999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCcc---------------------ccccccccCCCCccCcccc-CCCCCCCcccchhhhHHHHHHHhC
Q 004218 611 LARSLLERIGNQSS---------------------ISSTHVLKGSIGYIPPEYG-LGEKPSTAGDVYSFGVMLLEIFTG 667 (767)
Q Consensus 611 ~a~~~~~~~~~~~~---------------------~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~tg 667 (767)
+++........... .......+||+.|+|||++ .+..++.++||||+||++|||++|
T Consensus 202 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 202 LARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred cchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 99876432211000 0122445789999999975 566799999999999999999994
No 158
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=346.67 Aligned_cols=278 Identities=26% Similarity=0.382 Sum_probs=205.8
Q ss_pred hcCCCCCCccccccceEEEEEEe-----CCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL-----REGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
.++|++.+.||+|+||.||+|.+ .+++.||||++........+.+.+|++++++++||||+++++++.. ...
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~ 116 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGR 116 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEe---cCC
Confidence 46789999999999999999984 3588999999976666667789999999999999999999998753 233
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
...++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~D 188 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHK-----ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGD 188 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHST-----TSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEec
Confidence 46799999999999999997653 2389999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||.+......... ........++..|+|||.+.+..++.++||||+|+++|+|++|..||...... ........
T Consensus 189 fg~~~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~---~~~~~~~~ 262 (326)
T 2w1i_A 189 FGLTKVLPQDKEY---YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGND 262 (326)
T ss_dssp CTTCEECCSSCSE---EECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHH---HHHHHCTT
T ss_pred Ccchhhccccccc---cccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHH---HHHhhccc
Confidence 9999865432111 01112344677899999998888999999999999999999999997542110 00000000
Q ss_pred cccchhhhccHHHHHhhhcch--hhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSE--SQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
. ........+...+.... ....... ..+.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus 263 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 263 K---QGQMIVFHLIELLKNNGRLPRPDGCP----DEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp C---CTHHHHHHHHHHHHTTCCCCCCTTCC----HHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred c---chhhhHHHHHHHhhcCCCCCCCCccc----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 0 00000001111110000 0000111 12223777999999999999999999999998765
No 159
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.9e-40 Score=353.36 Aligned_cols=209 Identities=27% Similarity=0.395 Sum_probs=164.8
Q ss_pred HHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc--CCcchhhHHHHHHHHhcCC-CCCceeEEeeeecCCccc
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE--STGTWKSFFAECEALRNTR-HRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~ 527 (767)
...++|++.+.||+|+||.||+|.+. +|+.||||++... .....+.+.+|+.+++.+. ||||+++++++.. .+
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~---~~ 82 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRA---DN 82 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC---TT
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEec---CC
Confidence 45679999999999999999999975 5899999998543 2334567889999999997 9999999999753 23
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
...+|+||||++ |+|.+++.... +++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 83 ~~~~~lv~e~~~-~~L~~~~~~~~-------~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~ 151 (388)
T 3oz6_A 83 DRDVYLVFDYME-TDLHAVIRANI-------LEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVA 151 (388)
T ss_dssp SSCEEEEEECCS-EEHHHHHHHTC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEEC
T ss_pred CCEEEEEecccC-cCHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEec
Confidence 456899999997 59999997543 89999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCC---------------ccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCC
Q 004218 608 DFGLARSLLERIGNQ---------------SSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPT 671 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~---------------~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~ 671 (767)
|||+|+......... ..........||+.|+|||++.+ ..++.++||||+||++|||++|++||
T Consensus 152 DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf 231 (388)
T 3oz6_A 152 DFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIF 231 (388)
T ss_dssp CCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred CCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCC
Confidence 999997653211000 01112234579999999999876 67899999999999999999999999
Q ss_pred CCc
Q 004218 672 HES 674 (767)
Q Consensus 672 ~~~ 674 (767)
...
T Consensus 232 ~~~ 234 (388)
T 3oz6_A 232 PGS 234 (388)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 160
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=2e-39 Score=336.13 Aligned_cols=269 Identities=21% Similarity=0.266 Sum_probs=205.2
Q ss_pred hcCCCCCCccccccceEEEEEEe-CCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL-REGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.++|++.+.||+|+||.||+|.+ .+++.||||++.... ..+.+.+|+++++.++|++++..+.++. ..+...+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~~~ 81 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDYNV 81 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEE----EETTEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCcccccc----CCCCceE
Confidence 57899999999999999999997 469999999986433 3356889999999999988887777653 3456779
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeC---CCCceEEccc
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLD---EDMTAKVGDF 609 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~---~~~~~kl~Df 609 (767)
+||||+ +++|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++ .++.+||+||
T Consensus 82 lv~e~~-~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Df 152 (296)
T 3uzp_A 82 MVMELL-GPSLEDLFNFCS-----RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDF 152 (296)
T ss_dssp EEEECC-CCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCC
T ss_pred EEEEec-CCCHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeC
Confidence 999999 889999997433 2399999999999999999999999 999999999999994 8889999999
Q ss_pred cchhhhhhhcCCCc-cccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc-c-hhhHhh
Q 004218 610 GLARSLLERIGNQS-SISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV-S-LVKWVE 686 (767)
Q Consensus 610 g~a~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~-~-~~~~~~ 686 (767)
|.++.......... .........||+.|+|||++.+..++.++||||||+++|+|++|+.||........ . ......
T Consensus 153 g~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~ 232 (296)
T 3uzp_A 153 GLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISE 232 (296)
T ss_dssp TTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHH
T ss_pred CCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcc
Confidence 99986644322111 01112445699999999999999999999999999999999999999976432211 1 111111
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
...+..... ....+...+.+++.+||+.||++|||++|+++.|+++.....
T Consensus 233 ~~~~~~~~~-------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~ 283 (296)
T 3uzp_A 233 KKMSTPIEV-------------------LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp HHHHSCHHH-------------------HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred cccCCchHH-------------------HHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence 111100000 000011112237778999999999999999999999877654
No 161
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=5.5e-40 Score=346.42 Aligned_cols=275 Identities=21% Similarity=0.369 Sum_probs=210.4
Q ss_pred HHHHhcCCCCCCccccccceEEEEEEeCC------CcEEEEEEeeccCC-cchhhHHHHHHHHhcC-CCCCceeEEeeee
Q 004218 450 LRRATGNFSHENLIGSGSFGSVYKGYLRE------GISVAVKVLDIEST-GTWKSFFAECEALRNT-RHRNLVKLITSCS 521 (767)
Q Consensus 450 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~ 521 (767)
.....++|++.+.||+|+||.||+|.+.. ...||+|.+..... ...+.+.+|+++++.+ +||||+++++++.
T Consensus 41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~ 120 (333)
T 2i1m_A 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT 120 (333)
T ss_dssp GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence 34456789999999999999999999753 24799999865432 3456788999999999 8999999999964
Q ss_pred cCCcccceeeEEEEeecCCCChhhhhcccCCC--------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCC
Q 004218 522 SLDFKNMEFLALVYEFLGNGSLGDWIHGERKN--------EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKP 593 (767)
Q Consensus 522 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~--------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp 593 (767)
..+..++||||+++|+|.+++...... .....+++..++.++.|++.||+|||++ +|+||||||
T Consensus 121 -----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp 192 (333)
T 2i1m_A 121 -----HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAA 192 (333)
T ss_dssp -----SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred -----cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCccc
Confidence 345679999999999999999754310 0123489999999999999999999999 999999999
Q ss_pred CCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCC
Q 004218 594 GNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTH 672 (767)
Q Consensus 594 ~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~ 672 (767)
+||+++.++.+||+|||+++........ .......||+.|+|||++.+..++.++||||||+++|+|++ |..||.
T Consensus 193 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 268 (333)
T 2i1m_A 193 RNVLLTNGHVAKIGDFGLARDIMNDSNY----IVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYP 268 (333)
T ss_dssp GGCEEEGGGEEEBCCCGGGCCGGGCTTS----EECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred ceEEECCCCeEEECccccccccccccce----eecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999999999999999999865443211 11233457889999999988889999999999999999998 999986
Q ss_pred CcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHH
Q 004218 673 ESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQ 752 (767)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 752 (767)
...... ..................++. +.+++.+||+.||++|||+.|+++.|+++.
T Consensus 269 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 325 (333)
T 2i1m_A 269 GILVNS-KFYKLVKDGYQMAQPAFAPKN----------------------IYSIMQACWALEPTHRPTFQQICSFLQEQA 325 (333)
T ss_dssp TCCSSH-HHHHHHHHTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ccchhH-HHHHHHhcCCCCCCCCCCCHH----------------------HHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence 543221 112222222211111111211 122667899999999999999999999988
Q ss_pred HHHhhcC
Q 004218 753 KILLKRR 759 (767)
Q Consensus 753 ~~~~~~~ 759 (767)
....+.+
T Consensus 326 ~~~~~~r 332 (333)
T 2i1m_A 326 QEDRRER 332 (333)
T ss_dssp HHHHHHC
T ss_pred HhhhccC
Confidence 7765543
No 162
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.5e-39 Score=333.07 Aligned_cols=247 Identities=28% Similarity=0.374 Sum_probs=174.6
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++... .....+.+.+|+++++.++||||+++++++. ..+
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 86 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK-----SKD 86 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe-----cCC
Confidence 368999999999999999999965 5899999998643 2234567889999999999999999999964 445
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+ ++++.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 87 ~~~lv~e~~-~~~l~~~~~~~~------~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Df 156 (275)
T 2eue_A 87 EIIMVIEYA-GNELFDYIVQRD------KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADF 156 (275)
T ss_dssp CEEEEEECC-CEEHHHHHHTSS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCS
T ss_pred eEEEEehhc-CCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeec
Confidence 679999999 668888886543 399999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
|.+....... ......||+.|+|||++.+..+ +.++||||+|+++|+|++|+.||...... .....+...
T Consensus 157 g~~~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~ 227 (275)
T 2eue_A 157 GLSNIMTDGN-------FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP--VLFKNISNG 227 (275)
T ss_dssp SCC----------------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHT
T ss_pred ccceeccCcc-------cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhC
Confidence 9997654321 1123458999999999988765 78999999999999999999999653211 111111111
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.. ..+..+++. +.+++.+||+.||++|||++|++++
T Consensus 228 ~~-~~~~~~~~~----------------------~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 228 VY-TLPKFLSPG----------------------AAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp CC-CCCTTSCHH----------------------HHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred CC-CCCccCCHH----------------------HHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 00 011111111 2236778999999999999999874
No 163
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=7.6e-40 Score=337.20 Aligned_cols=258 Identities=27% Similarity=0.433 Sum_probs=202.0
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc------
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF------ 525 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~------ 525 (767)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... +.+.+|++++++++||||+++++++....+
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 4567999999999999999999986 69999999986432 467799999999999999999998753211
Q ss_pred -----ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC
Q 004218 526 -----KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE 600 (767)
Q Consensus 526 -----~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~ 600 (767)
......++||||+++|+|.+++.... ...+++..++.++.|++.||+|||++ +|+||||||+||+++.
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~ 157 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR----GEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVD 157 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGG----GSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhcc----CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcC
Confidence 23556899999999999999997543 23489999999999999999999999 9999999999999999
Q ss_pred CCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcc
Q 004218 601 DMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVS 680 (767)
Q Consensus 601 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~ 680 (767)
++.+||+|||.+....... ......||+.|+|||++.+..++.++||||+|+++|+|++|..|+.... .
T Consensus 158 ~~~~kl~Dfg~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~----~ 226 (284)
T 2a19_B 158 TKQVKIGDFGLVTSLKNDG-------KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS----K 226 (284)
T ss_dssp TTEEEECCCTTCEESSCCS-------CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH----H
T ss_pred CCCEEECcchhheeccccc-------cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH----H
Confidence 9999999999997654321 1123458999999999999899999999999999999999998863210 0
Q ss_pred hhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 004218 681 LVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLK 757 (767)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 757 (767)
...... .......+++ .+.+++.+||+.||++|||+.|++++|+.+.+....
T Consensus 227 ~~~~~~---~~~~~~~~~~----------------------~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~ 278 (284)
T 2a19_B 227 FFTDLR---DGIISDIFDK----------------------KEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEK 278 (284)
T ss_dssp HHHHHH---TTCCCTTSCH----------------------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC----
T ss_pred HHHHhh---cccccccCCH----------------------HHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCc
Confidence 000000 0001111111 122367789999999999999999999988765543
No 164
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=8.8e-40 Score=357.17 Aligned_cols=248 Identities=29% Similarity=0.402 Sum_probs=197.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|.+.+.||+|+||.||+|.+. +|+.||||++... .....+.+.+|+++++.++||||+++++++. ...
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~-----~~~ 89 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIS-----TPS 89 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECC
Confidence 368999999999999999999976 6999999999643 2234567889999999999999999999964 445
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 90 ~~~lv~E~~~gg~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DF 160 (476)
T 2y94_A 90 DIFMVMEYVSGGELFDYICKNG------RLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADF 160 (476)
T ss_dssp EEEEEEECCSSEEHHHHTTSSS------SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred EEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEec
Confidence 6799999999999999997543 399999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
|++...... .......||+.|+|||++.+..+ +.++||||+||++|+|++|+.||...... .....+...
T Consensus 161 G~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~--~~~~~i~~~ 231 (476)
T 2y94_A 161 GLSNMMSDG-------EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVP--TLFKKICDG 231 (476)
T ss_dssp SSCEECCTT-------CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSH--HHHHHHHTT
T ss_pred cchhhcccc-------ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHH--HHHHHHhcC
Confidence 999765332 11234569999999999988776 68999999999999999999999653221 111111111
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.. ..+..+++. +.+++.+||+.||++|||++|++++
T Consensus 232 ~~-~~p~~~s~~----------------------~~~Li~~~L~~dP~~Rpt~~eil~h 267 (476)
T 2y94_A 232 IF-YTPQYLNPS----------------------VISLLKHMLQVDPMKRATIKDIREH 267 (476)
T ss_dssp CC-CCCTTCCHH----------------------HHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred Cc-CCCccCCHH----------------------HHHHHHHHcCCCchhCcCHHHHHhC
Confidence 00 001111111 2236778999999999999999985
No 165
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=1.1e-39 Score=360.62 Aligned_cols=252 Identities=25% Similarity=0.362 Sum_probs=200.3
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|... +|+.||+|++... .......+.+|+++++.++||||+++++++. +..
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~-----~~~ 257 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYE-----TKD 257 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEe-----eCC
Confidence 467999999999999999999976 5999999999643 2334567889999999999999999999854 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.+++||||++||+|.+++.... ...+++..+..++.||+.||+|||++ +|+||||||+||+++.+|.+||+||
T Consensus 258 ~l~lVmEy~~gg~L~~~l~~~~----~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DF 330 (576)
T 2acx_A 258 ALCLVLTLMNGGDLKFHIYHMG----QAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDL 330 (576)
T ss_dssp EEEEEECCCCSCBHHHHHHSSS----SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEEcCCCCcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEec
Confidence 7899999999999999997643 23489999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc--chhhHhhh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV--SLVKWVES 687 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~--~~~~~~~~ 687 (767)
|+++...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||........ .+...+.
T Consensus 331 Gla~~~~~~~-------~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~- 402 (576)
T 2acx_A 331 GLAVHVPEGQ-------TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVK- 402 (576)
T ss_dssp TTCEECCTTC-------CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHH-
T ss_pred ccceecccCc-------cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhh-
Confidence 9997653321 12335799999999999998999999999999999999999999976432211 1111111
Q ss_pred hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCC-----CHHHHHHH
Q 004218 688 NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRI-----DIREALRR 747 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~ 747 (767)
..+......+++ .+.+++.+||+.||++|| +++|++++
T Consensus 403 ~~~~~~p~~~s~----------------------~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H 445 (576)
T 2acx_A 403 EVPEEYSERFSP----------------------QARSLCSQLLCKDPAERLGCRGGSAREVKEH 445 (576)
T ss_dssp HCCCCCCTTSCH----------------------HHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred cccccCCccCCH----------------------HHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence 111111111222 122367789999999999 78998865
No 166
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=5.6e-40 Score=348.82 Aligned_cols=250 Identities=27% Similarity=0.357 Sum_probs=186.6
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccC---CcchhhHHHHHHH-HhcCCCCCceeEEeeeecCCcccc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIES---TGTWKSFFAECEA-LRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~-l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
.++|++.+.||+|+||.||+|+.+. ++.||+|++.... ....+.+.+|..+ ++.++||||+++++++. ..
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~-----~~ 111 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQ-----TA 111 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEE-----CS
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEE-----eC
Confidence 3679999999999999999999764 8899999996543 2234556677776 46789999999999854 45
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
..+|+||||+++|+|.+++...+. +++..+..++.||+.||+|||++ +|+||||||+||+++.+|.+||+|
T Consensus 112 ~~~~lv~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~D 182 (373)
T 2r5t_A 112 DKLYFVLDYINGGELFYHLQRERC------FLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTD 182 (373)
T ss_dssp SEEEEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECC
T ss_pred CEEEEEEeCCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEee
Confidence 678999999999999999976443 89999999999999999999999 999999999999999999999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||+++...... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+...
T Consensus 183 FG~a~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~--~~~~~i~~~ 254 (373)
T 2r5t_A 183 FGLCKENIEHN------STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA--EMYDNILNK 254 (373)
T ss_dssp CCBCGGGBCCC------CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHH--HHHHHHHHS
T ss_pred CccccccccCC------CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHhc
Confidence 99997542211 1234567999999999999999999999999999999999999999653211 111111100
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
+......++. .+.+++.+||+.||++||++.+.++.+
T Consensus 255 -~~~~~~~~~~----------------------~~~~li~~lL~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 255 -PLQLKPNITN----------------------SARHLLEGLLQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp -CCCCCSSSCH----------------------HHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred -ccCCCCCCCH----------------------HHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence 0000111111 122366789999999999986444333
No 167
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=6.9e-40 Score=337.19 Aligned_cols=252 Identities=25% Similarity=0.320 Sum_probs=191.6
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|.+.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++. +....
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~ 95 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFE-----DYHNM 95 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHhee-----cCCeE
Confidence 357999999999999999999975 48899999986543 334678899999999999999999999964 45567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee---CCCCceEEcc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL---DEDMTAKVGD 608 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~D 608 (767)
++||||+++|+|.+++...... ...+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|
T Consensus 96 ~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~D 170 (285)
T 3is5_A 96 YIVMETCEGGELLERIVSAQAR--GKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIID 170 (285)
T ss_dssp EEEECCCSCCBHHHHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECC
T ss_pred EEEEEeCCCCcHHHHHHhhhhc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEe
Confidence 9999999999999998654211 23499999999999999999999999 99999999999999 4568899999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
||.+....... ......||+.|+|||++. ..++.++||||+|+++|+|++|+.||....... ........
T Consensus 171 fg~a~~~~~~~-------~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~--~~~~~~~~ 240 (285)
T 3is5_A 171 FGLAELFKSDE-------HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEE--VQQKATYK 240 (285)
T ss_dssp CCCCCC-----------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHC
T ss_pred eecceecCCcc-------cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHH--HHhhhccC
Confidence 99997654321 123456899999999876 468899999999999999999999996532211 11111110
Q ss_pred cccch--hhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPKNA--QQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.+... ...++ +. +.+++.+||+.||++|||+.|++++
T Consensus 241 ~~~~~~~~~~~~------------------~~----~~~li~~~L~~dP~~Rps~~e~l~h 279 (285)
T 3is5_A 241 EPNYAVECRPLT------------------PQ----AVDLLKQMLTKDPERRPSAAQVLHH 279 (285)
T ss_dssp CCCCCC--CCCC------------------HH----HHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred CcccccccCcCC------------------HH----HHHHHHHHccCChhhCcCHHHHhcC
Confidence 00000 00011 11 1226778999999999999999863
No 168
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=6.9e-40 Score=357.08 Aligned_cols=210 Identities=25% Similarity=0.330 Sum_probs=170.8
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc--CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE--STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++... .....+++.+|+++++.++||||+++++++..........
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 468999999999999999999976 4889999999643 2234567899999999999999999999986655445567
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
+|+||||++ |+|.+++.... .+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~------~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFG 174 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI------FLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFG 174 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEecCC-cCHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCC
Confidence 899999996 59999997643 399999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCc----------------cccccccccCCCCccCcccc-CCCCCCCcccchhhhHHHHHHHhCCCCCCC
Q 004218 611 LARSLLERIGNQS----------------SISSTHVLKGSIGYIPPEYG-LGEKPSTAGDVYSFGVMLLEIFTGMSPTHE 673 (767)
Q Consensus 611 ~a~~~~~~~~~~~----------------~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~slG~il~el~tg~~p~~~ 673 (767)
+++.......... .........||+.|+|||++ .+..++.++||||+||++|||++|..||..
T Consensus 175 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~ 254 (432)
T 3n9x_A 175 LARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHIN 254 (432)
T ss_dssp TCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCS
T ss_pred CcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccccc
Confidence 9987644321100 00122456799999999985 566799999999999999999997666543
No 169
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=9.5e-40 Score=346.49 Aligned_cols=265 Identities=22% Similarity=0.287 Sum_probs=196.7
Q ss_pred HHHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc-----CCcchhhHHHHHHHHhcCCCCCceeEEeeeecC
Q 004218 450 LRRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE-----STGTWKSFFAECEALRNTRHRNLVKLITSCSSL 523 (767)
Q Consensus 450 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 523 (767)
+....++|++.+.||+|+||.||+|.+. +++.||+|++... .....+.+.+|++++++++||||+++++++.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-- 98 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE-- 98 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE--
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc--
Confidence 3456788999999999999999999975 4889999998643 3445678999999999999999999999964
Q ss_pred CcccceeeEEEEeecCCCChhhhhcccCCCC----------------------------------CCCCCCHHHHHHHHH
Q 004218 524 DFKNMEFLALVYEFLGNGSLGDWIHGERKNE----------------------------------HGNGLNFLERLNIAI 569 (767)
Q Consensus 524 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~----------------------------------~~~~l~~~~~~~i~~ 569 (767)
+....++||||+++|+|.+++....... ....+++..++.++.
T Consensus 99 ---~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (345)
T 3hko_A 99 ---DEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMR 175 (345)
T ss_dssp ---CSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHH
T ss_pred ---cCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHH
Confidence 4567899999999999999996321110 011246778899999
Q ss_pred HHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC--ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCC--
Q 004218 570 DIASALDYLHNDCEVPIVHCDLKPGNILLDEDM--TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-- 645 (767)
Q Consensus 570 ~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~--~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-- 645 (767)
|++.||+|||+. +|+||||||+||+++.++ .+||+|||.++.+....... ........||+.|+|||++.+
T Consensus 176 qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~ 250 (345)
T 3hko_A 176 QIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGE--YYGMTTKAGTPYFVAPEVLNTTN 250 (345)
T ss_dssp HHHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC----------CCCGGGCCHHHHTCSS
T ss_pred HHHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccc--cccccccCCCccccCchhhccCC
Confidence 999999999999 999999999999998776 89999999998654322111 112234568999999999875
Q ss_pred CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcc--cchhhhccHHHHHhhhcchhhHHHHHHHHHHHH
Q 004218 646 EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFP--KNAQQVLDRELRQLMMSSESQTIQLHDCLITII 723 (767)
Q Consensus 646 ~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 723 (767)
..++.++||||||+++|||++|+.||....... ........... ......+++ .+
T Consensus 251 ~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 307 (345)
T 3hko_A 251 ESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDAD-TISQVLNKKLCFENPNYNVLSP----------------------LA 307 (345)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCCTTSGGGGGSCH----------------------HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHhcccccCCcccccCCH----------------------HH
Confidence 678999999999999999999999996532211 11111111111 001111111 12
Q ss_pred HHHhccccCCCCCCCCCHHHHHHH
Q 004218 724 ESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 724 ~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.+++.+||+.||++|||+.|++++
T Consensus 308 ~~li~~~l~~~p~~Rps~~~~l~h 331 (345)
T 3hko_A 308 RDLLSNLLNRNVDERFDAMRALQH 331 (345)
T ss_dssp HHHHHHHSCSCTTTSCCHHHHHHS
T ss_pred HHHHHHHcCCChhHCCCHHHHhcC
Confidence 236678999999999999999874
No 170
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=2.6e-39 Score=350.84 Aligned_cols=254 Identities=25% Similarity=0.320 Sum_probs=188.3
Q ss_pred HHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--------CcchhhHHHHHHHHhcCCCCCceeEEeeeec
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--------TGTWKSFFAECEALRNTRHRNLVKLITSCSS 522 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~ 522 (767)
...++|.+.+.||+|+||.||+|.+. +++.||||++.... ......+.+|++++++++||||+++++++.
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~- 210 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD- 210 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence 44679999999999999999999976 48999999986431 122346889999999999999999999853
Q ss_pred CCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC-
Q 004218 523 LDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED- 601 (767)
Q Consensus 523 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~- 601 (767)
....++||||+++|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 211 -----~~~~~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~ 276 (419)
T 3i6u_A 211 -----AEDYYIVLELMEGGELFDKVVGNK------RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQE 276 (419)
T ss_dssp -----SSEEEEEEECCTTCBGGGGTSSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSS
T ss_pred -----cCceEEEEEcCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCC
Confidence 233689999999999999987543 399999999999999999999999 99999999999999754
Q ss_pred --CceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCC---CCCCCcccchhhhHHHHHHHhCCCCCCCccc
Q 004218 602 --MTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG---EKPSTAGDVYSFGVMLLEIFTGMSPTHESFA 676 (767)
Q Consensus 602 --~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~ 676 (767)
+.+||+|||+++..... .......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.....
T Consensus 277 ~~~~~kl~DFG~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~ 349 (419)
T 3i6u_A 277 EDCLIKITDFGHSKILGET-------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT 349 (419)
T ss_dssp SSCCEEECCSSTTTSCC------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSS
T ss_pred CcceEEEeecccceecCCC-------ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcc
Confidence 45999999999865432 11234568999999999853 5678899999999999999999999975433
Q ss_pred CCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 677 GEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
... ....+........... ...+...+.+++.+||+.||++|||++|++++
T Consensus 350 ~~~-~~~~i~~~~~~~~~~~-------------------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 400 (419)
T 3i6u_A 350 QVS-LKDQITSGKYNFIPEV-------------------WAEVSEKALDLVKKLLVVDPKARFTTEEALRH 400 (419)
T ss_dssp SCC-HHHHHHTTCCCCCHHH-------------------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred hHH-HHHHHhcCCCCCCchh-------------------hcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence 222 2222211111100000 00011112237778999999999999999875
No 171
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.5e-39 Score=335.79 Aligned_cols=265 Identities=25% Similarity=0.372 Sum_probs=202.6
Q ss_pred CCCCCCccccccceEEEEEEeCC----CcEEEEEEeeccCC-cchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 456 NFSHENLIGSGSFGSVYKGYLRE----GISVAVKVLDIEST-GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 456 ~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.|+..+.||+|+||.||+|.+.+ +..||+|.+..... ...+.+.+|+++++.++||||+++++++.. .+..
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~ 97 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP----PEGL 97 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SSSC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec----CCCC
Confidence 46667899999999999998542 33799999864332 345778899999999999999999999743 2334
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||+.+|+|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 98 ~~~v~e~~~~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg 169 (298)
T 3pls_A 98 PHVLLPYMCHGDLLQFIRSPQ-----RNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFG 169 (298)
T ss_dssp CEEEECCCTTCBHHHHHHCTT-----CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTT
T ss_pred cEEEEecccCCCHHHHHhccc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCC
Confidence 589999999999999997643 3489999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFP 690 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 690 (767)
.++........ .........+|..|+|||.+.+..++.++||||+|+++|+|++|..|+...... ............
T Consensus 170 ~~~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~-~~~~~~~~~~~~ 246 (298)
T 3pls_A 170 LARDILDREYY--SVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDP-FDLTHFLAQGRR 246 (298)
T ss_dssp SSCTTTTGGGG--CSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCG-GGHHHHHHTTCC
T ss_pred CcccccCCccc--ccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCH-HHHHHHhhcCCC
Confidence 99865443211 111223456789999999999999999999999999999999966664332221 122222222211
Q ss_pred cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 004218 691 KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLK 757 (767)
Q Consensus 691 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 757 (767)
......+++. +.+++.+||+.||.+|||++|+++.|+++...+..
T Consensus 247 ~~~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~ 291 (298)
T 3pls_A 247 LPQPEYCPDS----------------------LYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLG 291 (298)
T ss_dssp CCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCccchHH----------------------HHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhc
Confidence 1111112221 22266789999999999999999999999887653
No 172
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.2e-40 Score=344.00 Aligned_cols=243 Identities=26% Similarity=0.345 Sum_probs=196.2
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC--------cchhhHHHHHHHHhcCCCCCceeEEeeeecC
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST--------GTWKSFFAECEALRNTRHRNLVKLITSCSSL 523 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 523 (767)
..++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|++++++++||||+++++++.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~-- 99 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFE-- 99 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEE--
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEe--
Confidence 4578999999999999999999965 588999999965421 13456788999999999999999999954
Q ss_pred CcccceeeEEEEeecCCC-ChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC
Q 004218 524 DFKNMEFLALVYEFLGNG-SLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM 602 (767)
Q Consensus 524 ~~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~ 602 (767)
..+..++||||+.+| +|.+++.... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++
T Consensus 100 ---~~~~~~lv~e~~~~g~~l~~~~~~~~------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~ 167 (335)
T 3dls_A 100 ---NQGFFQLVMEKHGSGLDLFAFIDRHP------RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDF 167 (335)
T ss_dssp ---CSSEEEEEEECCTTSCBHHHHHHTCC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTS
T ss_pred ---eCCEEEEEEEeCCCCccHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCC
Confidence 556779999999777 9999997654 399999999999999999999999 999999999999999999
Q ss_pred ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCcccCCcch
Q 004218 603 TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHESFAGEVSL 681 (767)
Q Consensus 603 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~ 681 (767)
.+||+|||+++...... ......||+.|+|||++.+..+ +.++||||+|+++|+|++|+.||......
T Consensus 168 ~~kL~Dfg~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---- 236 (335)
T 3dls_A 168 TIKLIDFGSAAYLERGK-------LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET---- 236 (335)
T ss_dssp CEEECCCTTCEECCTTC-------CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG----
T ss_pred cEEEeecccceECCCCC-------ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH----
Confidence 99999999997653321 1234568999999999988877 78999999999999999999999652211
Q ss_pred hhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 682 VKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
...... .+..+++. +.+++.+||+.||++|||++|++++
T Consensus 237 ---~~~~~~--~~~~~~~~----------------------l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 237 ---VEAAIH--PPYLVSKE----------------------LMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp ---TTTCCC--CSSCCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred ---HhhccC--CCcccCHH----------------------HHHHHHHHccCChhhCcCHHHHhcC
Confidence 000000 11112221 2226678999999999999999986
No 173
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=9.5e-40 Score=348.79 Aligned_cols=285 Identities=25% Similarity=0.261 Sum_probs=202.6
Q ss_pred CHHHHHHHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCc-----------chhhHHHHHHHHhcCCCCCce
Q 004218 446 SYDELRRATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTG-----------TWKSFFAECEALRNTRHRNLV 514 (767)
Q Consensus 446 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv 514 (767)
.++++....++|++.+.||+|+||.||+|.+.+|+.||||++...... ..+.+.+|++++++++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 356788899999999999999999999999888999999998543221 126789999999999999999
Q ss_pred eEEeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCC
Q 004218 515 KLITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPG 594 (767)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~ 594 (767)
++++++...+.......++||||++ |+|.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~ 163 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR-----IVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPG 163 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGG
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChH
Confidence 9999986654455668899999998 58888887543 3499999999999999999999999 9999999999
Q ss_pred CeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCC
Q 004218 595 NILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHE 673 (767)
Q Consensus 595 NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~ 673 (767)
||+++.++.+||+|||.++...... ......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||..
T Consensus 164 NIl~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 236 (362)
T 3pg1_A 164 NILLADNNDITICDFNLAREDTADA-------NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRG 236 (362)
T ss_dssp GEEECTTCCEEECCTTC----------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred HEEEcCCCCEEEEecCccccccccc-------ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCC
Confidence 9999999999999999997543321 1233468999999998876 6789999999999999999999999965
Q ss_pred cccCCcchhhHhhhhcccc---hhhhccHHHHHhhhcc----hh-hHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHH
Q 004218 674 SFAGEVSLVKWVESNFPKN---AQQVLDRELRQLMMSS----ES-QTIQLHDCLITIIESVGLSCTTESPGGRIDIREAL 745 (767)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~----~~-~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl 745 (767)
..... ............. ................ +. ............+.+++.+||+.||++|||+.|++
T Consensus 237 ~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 315 (362)
T 3pg1_A 237 STFYN-QLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQAL 315 (362)
T ss_dssp SSHHH-HHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCHHH-HHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHH
Confidence 42211 1111111100000 0011111111111000 00 00001111112233477799999999999999998
Q ss_pred HH
Q 004218 746 RR 747 (767)
Q Consensus 746 ~~ 747 (767)
++
T Consensus 316 ~h 317 (362)
T 3pg1_A 316 RH 317 (362)
T ss_dssp TS
T ss_pred cC
Confidence 75
No 174
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.7e-39 Score=340.10 Aligned_cols=284 Identities=25% Similarity=0.347 Sum_probs=202.3
Q ss_pred cCHHHHHHHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcC--CCCCceeEEeeeec
Q 004218 445 ISYDELRRATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNT--RHRNLVKLITSCSS 522 (767)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~~~~~~~~ 522 (767)
.+........++|++.+.||+|+||.||+|++. ++.||||++... ....+.+|.+++... +||||+++++++..
T Consensus 27 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~ 102 (337)
T 3mdy_A 27 LPLLVQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIK 102 (337)
T ss_dssp SCHHHHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEE
T ss_pred CCcccccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEcc
Confidence 344444556689999999999999999999987 899999998533 234455666666665 89999999998754
Q ss_pred CCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEeecCCCCCee
Q 004218 523 LDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDC-----EVPIVHCDLKPGNIL 597 (767)
Q Consensus 523 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlkp~NIl 597 (767)
.. ......++||||+++|+|.+++.... +++..++.++.|++.||+|||+.. .++|+||||||+||+
T Consensus 103 ~~-~~~~~~~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nil 174 (337)
T 3mdy_A 103 GT-GSWTQLYLITDYHENGSLYDYLKSTT-------LDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNIL 174 (337)
T ss_dssp SC-GGGCEEEEEECCCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEE
T ss_pred CC-CCCCceEEEEeccCCCcHHHHhhccC-------CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEE
Confidence 32 22367899999999999999996543 899999999999999999999751 238999999999999
Q ss_pred eCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCc------ccchhhhHHHHHHHhC----
Q 004218 598 LDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTA------GDVYSFGVMLLEIFTG---- 667 (767)
Q Consensus 598 ~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~slG~il~el~tg---- 667 (767)
++.++.+||+|||+++.......... .......||+.|+|||++.+...+.+ +|||||||++|||++|
T Consensus 175 l~~~~~~kl~Dfg~a~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~ 252 (337)
T 3mdy_A 175 VKKNGTCCIADLGLAVKFISDTNEVD--IPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSG 252 (337)
T ss_dssp ECTTSCEEECCCTTCEECC-----------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBT
T ss_pred ECCCCCEEEEeCCCceeecccccccc--CCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcc
Confidence 99999999999999976543321111 11124568999999999988776665 9999999999999999
Q ss_pred ------CCCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCH
Q 004218 668 ------MSPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDI 741 (767)
Q Consensus 668 ------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~ 741 (767)
+.||.......................... ........ ....+.+++.+||+.||++|||+
T Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~l~~li~~~l~~dP~~Rps~ 319 (337)
T 3mdy_A 253 GIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSF------------PNRWSSDE-CLRQMGKLMTECWAHNPASRLTA 319 (337)
T ss_dssp TBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCC------------CGGGGGSH-HHHHHHHHHHHHSCSSGGGSCCH
T ss_pred cccccccccHhhhcCCCCchhhhHHHHhhhccCccc------------cccchhhH-HHHHHHHHHHHhhhhChhhCCCH
Confidence 555544332222111111100000000000 00000001 11222337779999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004218 742 REALRRLKNAQKIL 755 (767)
Q Consensus 742 ~evl~~L~~~~~~~ 755 (767)
.|++++|+.+.+..
T Consensus 320 ~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 320 LRVKKTLAKMSESQ 333 (337)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987643
No 175
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.8e-39 Score=359.77 Aligned_cols=344 Identities=18% Similarity=0.268 Sum_probs=287.0
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEe
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYN 81 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 81 (767)
++|++|+|++|+++ .+|...+.++++|++|+|++|++.+..|..|+++++|++|+|++|+++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 47899999999998 677666667999999999999999888999999999999999999999 56665 799999999
Q ss_pred ecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhcccc--CeEEccCCcc--cccCCccccCCC---
Q 004218 82 IGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVL--SKLYMGGNRF--YGKIPTSIGRLR--- 154 (767)
Q Consensus 82 l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L--~~L~l~~n~i--~~~~~~~l~~l~--- 154 (767)
+++|++.+. ..+..+.++++|++|++++|++++ ..+..+++ | ++|++++|++ .+..|..+..+.
T Consensus 97 L~~N~l~~~-----~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~-L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 97 LSFNAFDAL-----PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAH-LNISKVLLVLGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp CCSSCCSSC-----CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTT-SCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred ccCCccccc-----cchhhhccCCcceEEEecCcccch---hhcccccc-ceeeEEEeecccccccccccccccccccce
Confidence 999998754 456788899999999999999875 35566665 6 8888888888 555565555533
Q ss_pred --------------------------------------------------------------------------------
Q 004218 155 -------------------------------------------------------------------------------- 154 (767)
Q Consensus 155 -------------------------------------------------------------------------------- 154 (767)
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence
Q ss_pred CCCEEECcCCcCcccCcccc-----CCCCCCCEEEccCCccccccC-c-------------------------CcccCCC
Q 004218 155 SLTLLNLSYNSISGEILTEI-----GQLQELQSLDLAGNQISGSIP-N-------------------------TLGNLKK 203 (767)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~-~-------------------------~~~~l~~ 203 (767)
+|++|++++|.+++..|..+ ..+++|+.+++++|.+ .+| . .+..+++
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 325 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence 68888888888887777777 6666666666666655 122 1 1267899
Q ss_pred CceeeCCCCcCCCCCcccccCccccccccccCcccCC--CCChhhcccccccceeecccccCCCCCch-hhcCCCceeEE
Q 004218 204 LNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNG--NIPKEILSLSSLTTIVNLSKNFLDGTLPE-EIGMLGNVVTI 280 (767)
Q Consensus 204 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~l~~~l~l~~n~l~~~~~~-~~~~l~~L~~L 280 (767)
|++|++++|++++..|..++.+++|+.|++++|++++ .+|..+..+++|. .+++++|.+++.+|. .+..+++|+.|
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~-~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ-QLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC-EEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCC-EEECCCCcCCcccccchhccCccCCEE
Confidence 9999999999998889999999999999999999996 5567889999994 459999999985555 58899999999
Q ss_pred EccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCcc-ccccccCceEeccCCcC
Q 004218 281 DLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSD-LQNLRALRSLNLTFNNL 359 (767)
Q Consensus 281 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l 359 (767)
++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|+|++|++++ +|.. +..+++|+.|++++|++
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCC
Confidence 9999999887776665 79999999999999 788888899999999999999995 5554 89999999999999999
Q ss_pred cCcCCC
Q 004218 360 EGVVPR 365 (767)
Q Consensus 360 ~~~~~~ 365 (767)
++..+.
T Consensus 481 ~c~c~~ 486 (520)
T 2z7x_B 481 DCSCPR 486 (520)
T ss_dssp CCCHHH
T ss_pred cccCCc
Confidence 986553
No 176
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=1.6e-39 Score=341.78 Aligned_cols=267 Identities=25% Similarity=0.375 Sum_probs=201.8
Q ss_pred hcCCCCCCccccccceEEEEEEeC------CCcEEEEEEeecc-CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR------EGISVAVKVLDIE-STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 526 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++... ......++.+|+.++++++||||+++++++.
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 103 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----- 103 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEc-----
Confidence 478999999999999999999842 4778999998643 2334567889999999999999999999964
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC---CC
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKN-EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE---DM 602 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~ 602 (767)
.....++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||+. +|+||||||+||+++. +.
T Consensus 104 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~ 180 (327)
T 2yfx_A 104 QSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGR 180 (327)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTC
T ss_pred CCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcc
Confidence 345569999999999999999865432 1224589999999999999999999999 9999999999999984 45
Q ss_pred ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcch
Q 004218 603 TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSL 681 (767)
Q Consensus 603 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~ 681 (767)
.+||+|||.++......... ......||+.|+|||++.+..++.++||||||+++|+|++ |+.||...... ..
T Consensus 181 ~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~ 254 (327)
T 2yfx_A 181 VAKIGDFGMARDIYRASYYR----KGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EV 254 (327)
T ss_dssp CEEECCCHHHHHHHC----------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HH
T ss_pred eEEECccccccccccccccc----cCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH--HH
Confidence 69999999998664432111 1233457899999999988889999999999999999998 99998653211 11
Q ss_pred hhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 682 VKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
...+...........+++. +.+++.+||+.||++|||+.|++++|+.+.....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~~ 307 (327)
T 2yfx_A 255 LEFVTSGGRMDPPKNCPGP----------------------VYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPD 307 (327)
T ss_dssp HHHHHTTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCHH
T ss_pred HHHHhcCCCCCCCCCCCHH----------------------HHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCHH
Confidence 1222111111111111111 2226778999999999999999999998876543
No 177
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=5e-40 Score=347.14 Aligned_cols=246 Identities=26% Similarity=0.353 Sum_probs=192.5
Q ss_pred cCCCCCCccccccceEEEEEEe-CCCcEEEEEEeeccCC---cchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 455 GNFSHENLIGSGSFGSVYKGYL-REGISVAVKVLDIEST---GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
..|+..+.||+|+||.||+|.. .+++.||||++..... ...+.+.+|++++++++||||+++++++. ....
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~ 128 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYL-----REHT 128 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----ECCe
Confidence 4588999999999999999996 4689999999965432 23467889999999999999999999964 3456
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||++ |++.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 129 ~~lv~e~~~-g~l~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG 199 (348)
T 1u5q_A 129 AWLVMEYCL-GSASDLLEVHK-----KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFG 199 (348)
T ss_dssp EEEEEECCS-EEHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCT
T ss_pred EEEEEecCC-CCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeecc
Confidence 799999997 58888886433 2489999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccC---CCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL---GEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~ 687 (767)
+++..... ....||+.|+|||++. +..++.++|||||||++|||++|+.||....... ........
T Consensus 200 ~a~~~~~~----------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~-~~~~~~~~ 268 (348)
T 1u5q_A 200 SASIMAPA----------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQN 268 (348)
T ss_dssp TCBSSSSB----------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHS
T ss_pred CceecCCC----------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHhc
Confidence 99754321 2346899999999874 5678999999999999999999999986532111 11111111
Q ss_pred hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 688 NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..+.......++. +.+++.+||+.||++|||++|++++
T Consensus 269 ~~~~~~~~~~~~~----------------------l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 269 ESPALQSGHWSEY----------------------FRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp CCCCCCCTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred CCCCCCCCCCCHH----------------------HHHHHHHHcccChhhCcCHHHHhhC
Confidence 1111111111111 2236678999999999999999865
No 178
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-39 Score=364.02 Aligned_cols=365 Identities=19% Similarity=0.234 Sum_probs=274.4
Q ss_pred ccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeec
Q 004218 4 LVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIG 83 (767)
Q Consensus 4 L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 83 (767)
...++.++.+++ ++|..+. +++++|++++|.+.+..+.+|.++++|++|+|++|.+++..+..|+.+++|++|+|+
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC---SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEeCCCCcc-ccCCCcc---ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 457888999998 9998764 479999999999998888899999999999999999998778899999999999999
Q ss_pred CccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccc-cCCccccCCCCCCEEECc
Q 004218 84 FNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYG-KIPTSIGRLRSLTLLNLS 162 (767)
Q Consensus 84 ~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~ 162 (767)
+|++...+ +..+.++++|++|++++|++++..+..++++++ |++|++++|.+++ .+|..|+++++|++|+++
T Consensus 85 ~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 85 GNPIQSLA------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp TCCCCEEC------TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT-CCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred CCcCCccC------HhhhcCccccccccccccccccCCCcccccccc-ccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 99987532 356889999999999999999665557889988 9999999999986 469999999999999999
Q ss_pred CCcCcccCccccCCCCCC----CEEEccCCccccccC-------------------------------------------
Q 004218 163 YNSISGEILTEIGQLQEL----QSLDLAGNQISGSIP------------------------------------------- 195 (767)
Q Consensus 163 ~n~i~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~------------------------------------------- 195 (767)
+|++++..+..+..+++| ++|++++|.+.+..|
T Consensus 158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred CCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 999987666666655555 556666655543322
Q ss_pred --------------------------------------cCcccCCCCceeeCCCCcCCCCCcccc---------------
Q 004218 196 --------------------------------------NTLGNLKKLNQIDLSGNELASEIPTSF--------------- 222 (767)
Q Consensus 196 --------------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~--------------- 222 (767)
..+..+++|++|++++|.++. +|..+
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~ 316 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKF 316 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBC
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcc
Confidence 223334555555555555542 33333
Q ss_pred ---------------------------cCccccccccccCcccCCCC--ChhhcccccccceeecccccCCCCCchhhcC
Q 004218 223 ---------------------------GNFQNLLSIDLSNNKLNGNI--PKEILSLSSLTTIVNLSKNFLDGTLPEEIGM 273 (767)
Q Consensus 223 ---------------------------~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~ 273 (767)
..+++|+.|++++|++++.. +..+..+++|. .+++++|.+.+..+. +..
T Consensus 317 ~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~-~~~ 394 (570)
T 2z63_A 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK-YLDLSFNGVITMSSN-FLG 394 (570)
T ss_dssp SSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC-EEECCSCSEEEEEEE-EET
T ss_pred cccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccC-EEECCCCcccccccc-ccc
Confidence 23455555555555555332 45555666663 336777766644333 777
Q ss_pred CCceeEEEccCCCCCCCCC-cccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccC-CCCCccccccccCce
Q 004218 274 LGNVVTIDLSANGLSGNLP-NSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLS-GSIPSDLQNLRALRS 351 (767)
Q Consensus 274 l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 351 (767)
+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.++ +.+|..+..+++|+.
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 7777777777777776554 46777888888888888888777778888888888888888886 567778888888888
Q ss_pred EeccCCcCcCcCCCC-ccccccccccccCCcC
Q 004218 352 LNLTFNNLEGVVPRE-GIFRHTSMVHLEGNPK 382 (767)
Q Consensus 352 L~l~~N~l~~~~~~~-~~~~~~~~~~l~~Np~ 382 (767)
|++++|++++..|.. ..++++..+++.+|..
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 888888888775544 4567777788887754
No 179
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=3.4e-40 Score=346.36 Aligned_cols=268 Identities=24% Similarity=0.338 Sum_probs=205.0
Q ss_pred HHHHHHhcCCCCCCccccccceEEEEEEeC------CCcEEEEEEeeccCC-cchhhHHHHHHHHhcCCCCCceeEEeee
Q 004218 448 DELRRATGNFSHENLIGSGSFGSVYKGYLR------EGISVAVKVLDIEST-GTWKSFFAECEALRNTRHRNLVKLITSC 520 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~ 520 (767)
++.....++|++.+.||+|+||.||+|.+. +++.||+|++..... .....+.+|+++++.++||||+++++++
T Consensus 18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 97 (322)
T 1p4o_A 18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV 97 (322)
T ss_dssp CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEE
Confidence 344556789999999999999999999865 367899999864332 3345688999999999999999999996
Q ss_pred ecCCcccceeeEEEEeecCCCChhhhhcccCCC----CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCe
Q 004218 521 SSLDFKNMEFLALVYEFLGNGSLGDWIHGERKN----EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNI 596 (767)
Q Consensus 521 ~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NI 596 (767)
. .....++||||+++|+|.+++...+.. .....+++..++.++.|++.||+|||++ +|+||||||+||
T Consensus 98 ~-----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NI 169 (322)
T 1p4o_A 98 S-----QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNC 169 (322)
T ss_dssp C-----SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGE
T ss_pred c-----cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceE
Confidence 4 445679999999999999999764311 1113479999999999999999999999 999999999999
Q ss_pred eeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcc
Q 004218 597 LLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESF 675 (767)
Q Consensus 597 l~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~ 675 (767)
+++.++.+||+|||+++........ .......||+.|+|||++.+..++.++||||+|+++|+|++ |+.||....
T Consensus 170 li~~~~~~kl~Dfg~~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 245 (322)
T 1p4o_A 170 MVAEDFTVKIGDFGMTRDIYETDYY----RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS 245 (322)
T ss_dssp EECTTCCEEECCTTCCCGGGGGGCE----EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC
T ss_pred EEcCCCeEEECcCcccccccccccc----ccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC
Confidence 9999999999999999866443211 11223456889999999988889999999999999999999 889986532
Q ss_pred cCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHH
Q 004218 676 AGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNA 751 (767)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~ 751 (767)
.. .....+...........++. .+.+++.+||+.||++|||+.|++++|++.
T Consensus 246 ~~--~~~~~~~~~~~~~~~~~~~~----------------------~l~~li~~~l~~dp~~Rps~~e~l~~L~~~ 297 (322)
T 1p4o_A 246 NE--QVLRFVMEGGLLDKPDNCPD----------------------MLFELMRMCWQYNPKMRPSFLEIISSIKEE 297 (322)
T ss_dssp HH--HHHHHHHTTCCCCCCTTCCH----------------------HHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred HH--HHHHHHHcCCcCCCCCCCCH----------------------HHHHHHHHHcCCCcccCcCHHHHHHHHHHh
Confidence 11 11111111110011111111 122367789999999999999999999875
No 180
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=351.51 Aligned_cols=284 Identities=22% Similarity=0.275 Sum_probs=207.4
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+.. ++.||||++.... ....+.+.+|++++++++||||+++++++.. ......
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~---~~~~~~ 84 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE---TTTRHK 84 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---TTTCCE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeecc---CCCCee
Confidence 4679999999999999999999765 8999999996432 3345678899999999999999999998753 234467
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee----CCCCceEEc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL----DEDMTAKVG 607 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~----~~~~~~kl~ 607 (767)
++||||+++|+|.+++..... ...+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+
T Consensus 85 ~lv~e~~~~g~L~~~l~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~ 158 (396)
T 4eut_A 85 VLIMEFCPCGSLYTVLEEPSN---AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLT 158 (396)
T ss_dssp EEEECCCTTEEHHHHTTSGGG---TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEEC
T ss_pred EEEEecCCCCCHHHHHHhhhc---ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEe
Confidence 999999999999999976543 23489999999999999999999999 99999999999999 778889999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCC--------CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG--------EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV 679 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~ 679 (767)
|||.++...... ......||..|+|||++.+ ..++.++|||||||++|||++|+.||........
T Consensus 159 DFG~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~ 231 (396)
T 4eut_A 159 DFGAARELEDDE-------QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRR 231 (396)
T ss_dssp CGGGCEECCCGG-------GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTT
T ss_pred cCCCceEccCCC-------ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccc
Confidence 999997653321 1233568999999998764 4567899999999999999999999965332221
Q ss_pred c--hhhHhhhhcccchhhhccHHHHHhh--hcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHH
Q 004218 680 S--LVKWVESNFPKNAQQVLDRELRQLM--MSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQK 753 (767)
Q Consensus 680 ~--~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 753 (767)
. ....+....|......+.......+ .........+.+.+...+.+++.+||+.||++|||++|+++.++++..
T Consensus 232 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~ 309 (396)
T 4eut_A 232 NKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (396)
T ss_dssp CHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence 1 1111111111110000000000000 000000011223344445557789999999999999999999987654
No 181
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=8e-40 Score=358.63 Aligned_cols=250 Identities=26% Similarity=0.340 Sum_probs=188.5
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
..++|++.+.||+|+||.||+|... +|+.||||++... .......+.+|+++++.++||||+++++++. ..
T Consensus 146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~-----~~ 220 (446)
T 4ejn_A 146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQ-----TH 220 (446)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEE-----ET
T ss_pred ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEe-----eC
Confidence 3467999999999999999999975 5899999999653 3344567788999999999999999999964 44
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHN-DCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
+.+++||||+++|+|.+++.... .+++..+..++.|++.||+|||+ . +|+||||||+||+++.++.+||+
T Consensus 221 ~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~ 291 (446)
T 4ejn_A 221 DRLCFVMEYANGGELFFHLSRER------VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKIT 291 (446)
T ss_dssp TEEEEEECCCSSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEEC
T ss_pred CEEEEEEeeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEc
Confidence 56799999999999999997644 38999999999999999999998 8 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES 687 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~ 687 (767)
|||+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+..
T Consensus 292 DFG~a~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~ 363 (446)
T 4ejn_A 292 DFGLCKEGIKDG------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--KLFELILM 363 (446)
T ss_dssp CCCCCCTTCC-----------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH
T ss_pred cCCCceeccCCC------cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH--HHHHHHHh
Confidence 999997532211 1123467999999999999999999999999999999999999999653221 11111111
Q ss_pred hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCC-----CHHHHHHH
Q 004218 688 NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRI-----DIREALRR 747 (767)
Q Consensus 688 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~ 747 (767)
... ..+..+++ .+.+++.+||+.||++|| |++|++++
T Consensus 364 ~~~-~~p~~~~~----------------------~~~~li~~~L~~dP~~R~~~~~~t~~ell~h 405 (446)
T 4ejn_A 364 EEI-RFPRTLGP----------------------EAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 405 (446)
T ss_dssp CCC-CCCTTSCH----------------------HHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred CCC-CCCccCCH----------------------HHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence 000 01111111 122367789999999999 99999874
No 182
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=7.3e-40 Score=336.31 Aligned_cols=257 Identities=24% Similarity=0.303 Sum_probs=198.8
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.. .....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~~ 81 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID---RTNTT 81 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---GGGTE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEec---CCCce
Confidence 468999999999999999999976 58999999997543 2345678899999999999999999998642 34557
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-----eEeecCCCCCeeeCCCCceE
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVP-----IVHCDLKPGNILLDEDMTAK 605 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~Dlkp~NIl~~~~~~~k 605 (767)
.++||||+++|+|.+++...... ...+++..++.++.|++.||+|||+. + |+||||||+||+++.++.+|
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~k 156 (279)
T 2w5a_A 82 LYIVMEYCEGGDLASVITKGTKE--RQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVK 156 (279)
T ss_dssp EEEEEECCTTEEHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEE
T ss_pred EEEEEeCCCCCCHHHHHHhhccc--CCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEE
Confidence 89999999999999999764321 34489999999999999999999998 7 99999999999999999999
Q ss_pred EccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh
Q 004218 606 VGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV 685 (767)
Q Consensus 606 l~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~ 685 (767)
|+|||.++...... .......||..|+|||++.+..++.++||||+|+++|+|++|+.||...... .....+
T Consensus 157 l~dfg~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i 228 (279)
T 2w5a_A 157 LGDFGLARILNHDT------SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK--ELAGKI 228 (279)
T ss_dssp ECCCCHHHHC---C------HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHH
T ss_pred EecCchheeecccc------ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH--HHHHHH
Confidence 99999998654321 1112346899999999999888999999999999999999999998654211 111111
Q ss_pred hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 686 ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
...........+++ .+.+++.+||+.||++|||+.|+++++
T Consensus 229 ~~~~~~~~~~~~~~----------------------~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 229 REGKFRRIPYRYSD----------------------ELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp HHTCCCCCCTTSCH----------------------HHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred hhcccccCCcccCH----------------------HHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 11111111111111 122366789999999999999999865
No 183
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=3.7e-39 Score=341.57 Aligned_cols=281 Identities=22% Similarity=0.311 Sum_probs=207.5
Q ss_pred ccCHHHHHHHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhc--CCCCCceeEEeeee
Q 004218 444 MISYDELRRATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRN--TRHRNLVKLITSCS 521 (767)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~ 521 (767)
..++.......++|++.+.||+|+||.||+|++. ++.||||++... ..+.+.+|+++++. ++||||+++++++.
T Consensus 31 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~ 106 (342)
T 1b6c_B 31 GLPLLVQRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADN 106 (342)
T ss_dssp SSCHHHHHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEE
T ss_pred CCceeecccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeec
Confidence 4455555667789999999999999999999985 899999998632 34667889998887 78999999999975
Q ss_pred cCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEeecCCC
Q 004218 522 SLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLH--------NDCEVPIVHCDLKP 593 (767)
Q Consensus 522 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlkp 593 (767)
... ......++||||+++|+|.+++.... +++.+++.++.|++.||+||| +. +|+||||||
T Consensus 107 ~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp 175 (342)
T 1b6c_B 107 KDN-GTWTQLWLVSDYHEHGSLFDYLNRYT-------VTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKS 175 (342)
T ss_dssp CCC-SSCCCEEEEECCCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSG
T ss_pred ccC-CccceeEEEEeecCCCcHHHHHhccC-------ccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCH
Confidence 432 12236799999999999999997543 899999999999999999999 77 999999999
Q ss_pred CCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCC------CCCcccchhhhHHHHHHHhC
Q 004218 594 GNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEK------PSTAGDVYSFGVMLLEIFTG 667 (767)
Q Consensus 594 ~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~slG~il~el~tg 667 (767)
+||+++.++.+||+|||++......... .........||+.|+|||++.+.. ++.++||||||+++|||++|
T Consensus 176 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg 253 (342)
T 1b6c_B 176 KNILVKKNGTCCIADLGLAVRHDSATDT--IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARR 253 (342)
T ss_dssp GGEEECTTSCEEECCCTTCEEEETTTTE--EEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHEEECCCCCEEEEECCCceeccccccc--cccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhc
Confidence 9999999999999999999765433211 001123456899999999987653 33689999999999999999
Q ss_pred ----------CCCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCC
Q 004218 668 ----------MSPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGG 737 (767)
Q Consensus 668 ----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~ 737 (767)
+.||............+.............. .+....+ ....+.+++.+||+.||++
T Consensus 254 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~l~~li~~cl~~dp~~ 320 (342)
T 1b6c_B 254 CSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIP------------NRWQSCE-ALRVMAKIMRECWYANGAA 320 (342)
T ss_dssp BCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCC------------GGGGTSH-HHHHHHHHHHHHCCSSGGG
T ss_pred cCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCc------------ccccchh-HHHHHHHHHHHHhccChhh
Confidence 6777654333322222211110000000000 0000001 1122333777999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004218 738 RIDIREALRRLKNAQKI 754 (767)
Q Consensus 738 Rpt~~evl~~L~~~~~~ 754 (767)
|||+.|++++|+.+.+.
T Consensus 321 Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 321 RLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998764
No 184
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-40 Score=347.68 Aligned_cols=271 Identities=15% Similarity=0.179 Sum_probs=201.9
Q ss_pred cCCCCCCccccccceEEEEEEeCC---------CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeE---------
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLRE---------GISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKL--------- 516 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~--------- 516 (767)
++|++.+.||+|+||.||+|.+.. ++.||+|++... +.+.+|++++++++||||+++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 689999999999999999999764 789999998643 568899999999999999984
Q ss_pred ------EeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 004218 517 ------ITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCD 590 (767)
Q Consensus 517 ------~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D 590 (767)
++++. ..+...++||||+ +++|.+++.... ...+++.+++.++.|++.||+|||++ +|+|||
T Consensus 117 ~~i~~~~~~~~----~~~~~~~lv~e~~-~~~L~~~l~~~~----~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~D 184 (352)
T 2jii_A 117 LAIPTCMGFGV----HQDKYRFLVLPSL-GRSLQSALDVSP----KHVLSERSVLQVACRLLDALEFLHEN---EYVHGN 184 (352)
T ss_dssp CSCCCCCEEEE----ETTTEEEEEEECC-CEEHHHHHHHSG----GGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSC
T ss_pred cCccchhhccc----cCCcEEEEEecCC-CcCHHHHHHhCC----cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCC
Confidence 44432 2356789999999 999999998652 13499999999999999999999999 999999
Q ss_pred CCCCCeeeCCCC--ceEEccccchhhhhhhcCCCc-cccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhC
Q 004218 591 LKPGNILLDEDM--TAKVGDFGLARSLLERIGNQS-SISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTG 667 (767)
Q Consensus 591 lkp~NIl~~~~~--~~kl~Dfg~a~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg 667 (767)
|||+||+++.++ .+||+|||+++.......... .........||+.|+|||++.+..++.++||||||+++|||++|
T Consensus 185 ikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g 264 (352)
T 2jii_A 185 VTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYG 264 (352)
T ss_dssp CCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhC
Confidence 999999999998 999999999987654322111 11122345799999999999999999999999999999999999
Q ss_pred CCCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 668 MSPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 668 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
+.||.........+...... +.......... ......+.+. +.+++.+||+.||++|||++|+++.
T Consensus 265 ~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~----l~~li~~~l~~dp~~Rps~~~l~~~ 330 (352)
T 2jii_A 265 FLPWTNCLPNTEDIMKQKQK-FVDKPGPFVGP---------CGHWIRPSET----LQKYLKVVMALTYEEKPPYAMLRNN 330 (352)
T ss_dssp CCTTGGGTTCHHHHHHHHHH-HHHSCCCEECT---------TSCEECCCHH----HHHHHHHHHTCCTTCCCCHHHHHHH
T ss_pred CCCcccCCcCHHHHHHHHHh-ccCChhhhhhh---------ccccCCCcHH----HHHHHHHHHhCChhhCCCHHHHHHH
Confidence 99997643222212111110 00000000000 0000000111 2226678999999999999999999
Q ss_pred HHHHHHHHh
Q 004218 748 LKNAQKILL 756 (767)
Q Consensus 748 L~~~~~~~~ 756 (767)
|+++.....
T Consensus 331 L~~~~~~~~ 339 (352)
T 2jii_A 331 LEALLQDLR 339 (352)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 999887665
No 185
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=1.6e-39 Score=337.93 Aligned_cols=253 Identities=24% Similarity=0.349 Sum_probs=194.6
Q ss_pred HhcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
..++|++.+.||+|+||.||+|.+.. ++.||+|++........+.+.+|+++++.++||||+++++++. ..+..
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 91 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY-----HDGKL 91 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CC-CE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeee-----eCCeE
Confidence 34689999999999999999999864 8999999997666667788999999999999999999999964 34567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||+++++|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 92 ~lv~e~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~ 163 (302)
T 2j7t_A 92 WIMIEFCPGGAVDAIMLELD-----RGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGV 163 (302)
T ss_dssp EEEEECCTTEEHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHH
T ss_pred EEEEEeCCCCcHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCC
Confidence 99999999999999987533 2399999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCcccc-----CCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYG-----LGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~ 686 (767)
+......... .....||..|+|||++ .+..++.++||||+|+++|+|++|+.||....... .......
T Consensus 164 ~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~ 236 (302)
T 2j7t_A 164 SAKNLKTLQK------RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR-VLLKIAK 236 (302)
T ss_dssp HHHHHHHHHC-----------CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHH
T ss_pred Cccccccccc------cccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH-HHHHHhc
Confidence 8654332111 1234589999999987 46678999999999999999999999986532211 1111111
Q ss_pred hhcccc-hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 687 SNFPKN-AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 687 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
...+.. ....++. .+.+++.+||+.||++|||+.|++++
T Consensus 237 ~~~~~~~~~~~~~~----------------------~l~~li~~~l~~dp~~Rps~~~ll~h 276 (302)
T 2j7t_A 237 SDPPTLLTPSKWSV----------------------EFRDFLKIALDKNPETRPSAAQLLEH 276 (302)
T ss_dssp SCCCCCSSGGGSCH----------------------HHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred cCCcccCCccccCH----------------------HHHHHHHHHcccChhhCCCHHHHhcC
Confidence 111110 1111111 12236778999999999999999863
No 186
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.3e-41 Score=350.05 Aligned_cols=266 Identities=25% Similarity=0.360 Sum_probs=182.8
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhc--CCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRN--TRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|++. ++.||||++.. .....+.+|.+++.. ++||||+++++++.... ......
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~---~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~-~~~~~~ 76 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSS---REERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQL 76 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC----TTHHHHHHHHHHHTSTTCCC-CBCCEEEEEEEEC-SSSEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEecc---cchhhHHHHHHHHHHHhccCcceeeeeeecccCC-Ccccee
Confidence 368999999999999999999886 88999999863 234567788888887 79999999999975422 122368
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEeecCCCCCeeeCCCCc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLH--------NDCEVPIVHCDLKPGNILLDEDMT 603 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlkp~NIl~~~~~~ 603 (767)
++||||+++|+|.+++.... +++.+++.++.|++.||+||| +. +|+||||||+||+++.++.
T Consensus 77 ~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~ 146 (303)
T 3gxj_A 77 WLVSDYHEHGSLFDYLNRYT-------VTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGT 146 (303)
T ss_dssp EEEEECCTTCCHHHHHHHCC-------BCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCC
T ss_pred EEEEeccCCCCHHHHHhccC-------cchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCC
Confidence 99999999999999996543 788889999999999999999 77 9999999999999999999
Q ss_pred eEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCC------CCCCcccchhhhHHHHHHHhC----------
Q 004218 604 AKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE------KPSTAGDVYSFGVMLLEIFTG---------- 667 (767)
Q Consensus 604 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slG~il~el~tg---------- 667 (767)
+||+|||+++......... ........||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus 147 ~kl~DFg~a~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~ 224 (303)
T 3gxj_A 147 CCIADLGLAVRHDSATDTI--DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY 224 (303)
T ss_dssp C-BCCCCC-CCEETTTTEE--SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CC
T ss_pred EEEeecCcceeccCCCccc--ccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCcccccee
Confidence 9999999997654332111 1112334689999999998776 334689999999999999999
Q ss_pred CCCCCCcccCCcchh---hHh-hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHH
Q 004218 668 MSPTHESFAGEVSLV---KWV-ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIRE 743 (767)
Q Consensus 668 ~~p~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~e 743 (767)
+.||........... ..+ ........+ .+....++. ..+.+++.+||+.||++|||++|
T Consensus 225 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-~~l~~li~~cl~~dP~~Rps~~~ 287 (303)
T 3gxj_A 225 QLPYYDLVPSDPSVEEMRKVVCEQKLRPNIP----------------NRWQSCEAL-RVMAKIMRECWYANGAARLTALR 287 (303)
T ss_dssp CCTTTTTCC-CCCCC-CHHHHTTSCCCCCCC----------------GGGGSSHHH-HHHHHHHHTTCCSSGGGSCCHHH
T ss_pred eccccccCCCCccHHHHHHHHHHhhcCCCcc----------------ccccchhhH-HHHHHHHHHHhccCcccCCCHHH
Confidence 555544322211111 111 001111100 000001111 22233777999999999999999
Q ss_pred HHHHHHHHHH
Q 004218 744 ALRRLKNAQK 753 (767)
Q Consensus 744 vl~~L~~~~~ 753 (767)
+++.|+.+.+
T Consensus 288 i~~~L~~l~~ 297 (303)
T 3gxj_A 288 IKKTLSQLSQ 297 (303)
T ss_dssp HHHHHHC-CC
T ss_pred HHHHHHHhhh
Confidence 9999987654
No 187
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=3.4e-39 Score=332.11 Aligned_cols=252 Identities=25% Similarity=0.343 Sum_probs=194.9
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC------cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST------GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 526 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|++++++++||||+++++++.
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~----- 78 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFE----- 78 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheec-----
Confidence 357899999999999999999976 589999999865422 13567899999999999999999999964
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC----
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM---- 602 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~---- 602 (767)
.....++||||+++++|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 79 ~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~ 149 (283)
T 3bhy_A 79 NKTDVVLILELVSGGELFDFLAEKE------SLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNP 149 (283)
T ss_dssp CSSEEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSC
T ss_pred CCCeEEEEEeecCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCC
Confidence 4456799999999999999997543 389999999999999999999999 999999999999998877
Q ss_pred ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchh
Q 004218 603 TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLV 682 (767)
Q Consensus 603 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~ 682 (767)
.+||+|||.+....... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||....... ...
T Consensus 150 ~~kl~dfg~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~ 221 (283)
T 3bhy_A 150 RIKLIDFGIAHKIEAGN-------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQE-TLT 221 (283)
T ss_dssp CEEECCCTTCEECC---------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHH
T ss_pred ceEEEecccceeccCCC-------cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHH-HHH
Confidence 89999999997653321 1133458999999999999999999999999999999999999996532211 000
Q ss_pred hHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 683 KWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
......... ... ........+.+++.+||+.||++|||+.|++++
T Consensus 222 ~~~~~~~~~------~~~--------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 266 (283)
T 3bhy_A 222 NISAVNYDF------DEE--------------YFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEH 266 (283)
T ss_dssp HHHTTCCCC------CHH--------------HHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHC
T ss_pred HhHhcccCC------cch--------------hcccCCHHHHHHHHHHccCCHhHCcCHHHHHhC
Confidence 000000000 000 000011122337779999999999999999984
No 188
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=332.37 Aligned_cols=250 Identities=26% Similarity=0.422 Sum_probs=177.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC---CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES---TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++. ...
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 84 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFE-----DSN 84 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEE-----CSS
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEc-----cCC
Confidence 467999999999999999999974 68999999986432 233567889999999999999999999954 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++++|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~df 156 (278)
T 3cok_A 85 YVYLVLEMCHNGEMNRYLKNRV-----KPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADF 156 (278)
T ss_dssp EEEEEEECCTTEEHHHHHHTCS-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCC
T ss_pred eEEEEEecCCCCcHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEee
Confidence 7799999999999999997643 3489999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|.+........ ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||........ ........+
T Consensus 157 g~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~~~~ 229 (278)
T 3cok_A 157 GLATQLKMPHE------KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT-LNKVVLADY 229 (278)
T ss_dssp TTCEECC----------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC------CCSSCC
T ss_pred cceeeccCCCC------cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH-HHHHhhccc
Confidence 99976532211 11234689999999999988899999999999999999999999965432211 000000000
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..+..++.. +.+++.+||+.||++|||++|++++
T Consensus 230 --~~~~~~~~~----------------------~~~li~~~l~~dp~~Rps~~~~l~h 263 (278)
T 3cok_A 230 --EMPSFLSIE----------------------AKDLIHQLLRRNPADRLSLSSVLDH 263 (278)
T ss_dssp --CCCTTSCHH----------------------HHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred --CCccccCHH----------------------HHHHHHHHcccCHhhCCCHHHHhcC
Confidence 011111111 1236778999999999999999874
No 189
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=342.89 Aligned_cols=270 Identities=19% Similarity=0.215 Sum_probs=191.1
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCC-CCCceeEEeeeecCC---ccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTR-HRNLVKLITSCSSLD---FKN 527 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~---~~~ 527 (767)
...+|++.+.||+|+||.||+|.+. +++.||||++........+.+.+|+.+++++. ||||+++++++.... ...
T Consensus 26 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 105 (337)
T 3ll6_A 26 GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG 105 (337)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred cCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence 3468999999999999999999975 58999999987665566678899999999996 999999999974322 245
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEeecCCCCCeeeCCCCceE
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVP--IVHCDLKPGNILLDEDMTAK 605 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIl~~~~~~~k 605 (767)
...+++||||++ |+|.+++..... ...+++.+++.++.|++.||+|||+. + |+||||||+||+++.++.+|
T Consensus 106 ~~~~~lv~e~~~-g~L~~~l~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~k 178 (337)
T 3ll6_A 106 QAEFLLLTELCK-GQLVEFLKKMES---RGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIK 178 (337)
T ss_dssp SEEEEEEEECCS-EEHHHHHHHHHT---TCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEE
T ss_pred CceEEEEEEecC-CCHHHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEE
Confidence 567899999996 699998875332 23499999999999999999999998 8 99999999999999999999
Q ss_pred EccccchhhhhhhcCCCcc------ccccccccCCCCccCcccc---CCCCCCCcccchhhhHHHHHHHhCCCCCCCccc
Q 004218 606 VGDFGLARSLLERIGNQSS------ISSTHVLKGSIGYIPPEYG---LGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFA 676 (767)
Q Consensus 606 l~Dfg~a~~~~~~~~~~~~------~~~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~ 676 (767)
|+|||+++........... ........||+.|+|||++ .+..++.++||||||+++|+|++|+.||.....
T Consensus 179 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~ 258 (337)
T 3ll6_A 179 LCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAK 258 (337)
T ss_dssp BCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred EecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhH
Confidence 9999999865432211100 0111234589999999998 566788999999999999999999999965322
Q ss_pred CCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 677 GEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
.. ................. +.+++.+||+.||++|||+.|++++|+.+.....
T Consensus 259 ~~-----~~~~~~~~~~~~~~~~~----------------------~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 259 LR-----IVNGKYSIPPHDTQYTV----------------------FHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp ------------CCCCTTCCSSGG----------------------GHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred HH-----hhcCcccCCcccccchH----------------------HHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 11 11111111111111110 1226778999999999999999999999877544
No 190
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=3.5e-40 Score=347.22 Aligned_cols=249 Identities=23% Similarity=0.348 Sum_probs=192.8
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCccccee
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 530 (767)
..++|++.+.||+|+||.||+|.++ +++.||||++.... ....+|++++.++ +||||+++++++ .++..
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~E~~~l~~~~~hp~iv~~~~~~-----~~~~~ 90 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK----RDPTEEIEILLRYGQHPNIITLKDVY-----DDGKY 90 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT----CCCHHHHHHHHHHTTSTTBCCEEEEE-----ECSSE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc----CChHHHHHHHHHhcCCCCcCeEEEEE-----EcCCE
Confidence 3567999999999999999999976 48899999996543 2345788888887 799999999995 45567
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC----CceEE
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED----MTAKV 606 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~----~~~kl 606 (767)
+++||||+++|+|.+++.... .+++.++..++.|++.||+|||++ ||+||||||+||++.+. +.+||
T Consensus 91 ~~lv~E~~~gg~L~~~i~~~~------~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl 161 (342)
T 2qr7_A 91 VYVVTELMKGGELLDKILRQK------FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRI 161 (342)
T ss_dssp EEEEECCCCSCBHHHHHHTCT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEE
T ss_pred EEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEE
Confidence 899999999999999997643 399999999999999999999999 99999999999998533 35999
Q ss_pred ccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc-chhhHh
Q 004218 607 GDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV-SLVKWV 685 (767)
Q Consensus 607 ~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~-~~~~~~ 685 (767)
+|||+++....... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||........ .+...+
T Consensus 162 ~Dfg~a~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i 235 (342)
T 2qr7_A 162 CDFGFAKQLRAENG------LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARI 235 (342)
T ss_dssp CCCTTCEECBCTTC------CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHH
T ss_pred EECCCcccCcCCCC------ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHH
Confidence 99999976533211 12345689999999999887889999999999999999999999975322111 111111
Q ss_pred h-hhcc--cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 686 E-SNFP--KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 686 ~-~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
. ..++ ......+++ .+.+++.+||+.||++|||+.|++++
T Consensus 236 ~~~~~~~~~~~~~~~s~----------------------~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 236 GSGKFSLSGGYWNSVSD----------------------TAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp HHCCCCCCSTTTTTSCH----------------------HHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred ccCCcccCccccccCCH----------------------HHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 1 1111 001111111 12236778999999999999999875
No 191
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=2.1e-39 Score=345.83 Aligned_cols=279 Identities=20% Similarity=0.252 Sum_probs=202.5
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++...........
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 468999999999999999999976 58899999986433 2334678899999999999999999999876555556678
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||+++ +|.+++.... +++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.
T Consensus 106 ~iv~e~~~~-~L~~~l~~~~-------~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 174 (364)
T 3qyz_A 106 YIVQDLMET-DLYKLLKTQH-------LSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGL 174 (364)
T ss_dssp EEEEECCSE-EHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEcccCc-CHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcc
Confidence 999999974 9999987543 99999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh--
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN-- 688 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~-- 688 (767)
++......... .......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||........ +.......
T Consensus 175 a~~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~i~~~~~~ 250 (364)
T 3qyz_A 175 ARVADPDHDHT---GFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ-LNHILGILGS 250 (364)
T ss_dssp CEECCGGGCBC---CTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGH-HHHHHHHHCS
T ss_pred eEecCCCCCcc---ccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHH-HHHHHHHhCC
Confidence 98654432211 11234568999999998654 4589999999999999999999999966432221 11111100
Q ss_pred ccc-chhhhccHHHHHhhhcch----hhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPK-NAQQVLDRELRQLMMSSE----SQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~-~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.+. .................+ .........+...+.+++.+||+.||++|||++|++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 314 (364)
T 3qyz_A 251 PSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH 314 (364)
T ss_dssp CCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 000 011111111111100000 00000000111223347779999999999999999874
No 192
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=334.55 Aligned_cols=253 Identities=23% Similarity=0.338 Sum_probs=191.8
Q ss_pred CCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEEE
Q 004218 456 NFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLALV 534 (767)
Q Consensus 456 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv 534 (767)
+|.....||+|+||.||+|.+. +++.||+|.+........+.+.+|+.+++.++||||+++++++. ..+..++|
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~~~~lv 97 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFS-----ENGFIKIF 97 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTEEEEE
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEE-----eCCcEEEE
Confidence 4555568999999999999975 58899999997666666778999999999999999999999964 44567999
Q ss_pred EeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC-CCceEEccccchh
Q 004218 535 YEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE-DMTAKVGDFGLAR 613 (767)
Q Consensus 535 ~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~-~~~~kl~Dfg~a~ 613 (767)
|||+++++|.+++..... ...+++..+..++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||.+.
T Consensus 98 ~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~ 171 (295)
T 2clq_A 98 MEQVPGGSLSALLRSKWG---PLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSK 171 (295)
T ss_dssp EECCSEEEHHHHHHHTTC---CCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred EEeCCCCCHHHHHHhhcc---CCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeeccccc
Confidence 999999999999976432 23477899999999999999999999 9999999999999987 8999999999997
Q ss_pred hhhhhcCCCccccccccccCCCCccCccccCCCC--CCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhccc
Q 004218 614 SLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEK--PSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPK 691 (767)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 691 (767)
...... .......||+.|+|||++.+.. ++.++||||||+++|+|++|+.||....................
T Consensus 172 ~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 245 (295)
T 2clq_A 172 RLAGIN------PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHP 245 (295)
T ss_dssp ESCC-----------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCC
T ss_pred ccCCCC------CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccc
Confidence 653221 1123446899999999987643 78899999999999999999999854322111111110101111
Q ss_pred chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 692 NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 692 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.....+++. +.+++.+||+.||++|||+.|++++
T Consensus 246 ~~~~~~~~~----------------------~~~li~~~l~~dp~~Rps~~~ll~~ 279 (295)
T 2clq_A 246 EIPESMSAE----------------------AKAFILKCFEPDPDKRACANDLLVD 279 (295)
T ss_dssp CCCTTSCHH----------------------HHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred cccccCCHH----------------------HHHHHHHHccCChhhCCCHHHHhcC
Confidence 111111111 2236678999999999999999864
No 193
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=4.5e-39 Score=334.55 Aligned_cols=250 Identities=26% Similarity=0.382 Sum_probs=199.4
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
...|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++. .....
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 95 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYL-----KDTKL 95 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEe-----cCCeE
Confidence 457999999999999999999965 58999999997543 345678899999999999999999999864 34567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||+++++|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.
T Consensus 96 ~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~ 165 (303)
T 3a7i_A 96 WIIMEYLGGGSALDLLEPG-------PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGV 165 (303)
T ss_dssp EEEEECCTTEEHHHHHTTS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred EEEEEeCCCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeeccc
Confidence 9999999999999999653 389999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhccc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPK 691 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 691 (767)
+........ ......||+.|+|||++.+..++.++||||||+++|+|++|+.||...... .....+....+.
T Consensus 166 ~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~ 237 (303)
T 3a7i_A 166 AGQLTDTQI------KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KVLFLIPKNNPP 237 (303)
T ss_dssp CEECBTTBC------CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCCC
T ss_pred ceecCcccc------ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HHHHHhhcCCCC
Confidence 976543211 123456899999999999999999999999999999999999998653211 111111111111
Q ss_pred chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 692 NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 692 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
.....++.. +.+++.+||+.||++|||+.|++++.
T Consensus 238 ~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~~ll~~~ 272 (303)
T 3a7i_A 238 TLEGNYSKP----------------------LKEFVEACLNKEPSFRPTAKELLKHK 272 (303)
T ss_dssp CCCSSCCHH----------------------HHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred CCccccCHH----------------------HHHHHHHHcCCChhhCcCHHHHhhCh
Confidence 111111111 22367789999999999999998864
No 194
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=2.4e-39 Score=336.69 Aligned_cols=248 Identities=25% Similarity=0.331 Sum_probs=194.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.++|.+.+.||+|+||.||+|.+. +|+.||+|++........+.+.+|+++++.++||||+++++++. .....+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 82 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYE-----STTHYY 82 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcc-----cCCEEE
Confidence 467999999999999999999976 58999999997655445567889999999999999999999954 456779
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee---CCCCceEEccc
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL---DEDMTAKVGDF 609 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~Df 609 (767)
+||||+++++|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||++ +.++.+||+||
T Consensus 83 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Df 153 (304)
T 2jam_A 83 LVMQLVSGGELFDRILERG------VYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDF 153 (304)
T ss_dssp EEECCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSC
T ss_pred EEEEcCCCccHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccC
Confidence 9999999999999987543 289999999999999999999999 99999999999999 78899999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh-
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN- 688 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~- 688 (767)
|.+...... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||...... .....+...
T Consensus 154 g~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~ 223 (304)
T 2jam_A 154 GLSKMEQNG--------IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES--KLFEKIKEGY 223 (304)
T ss_dssp STTCCCCCB--------TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHCC
T ss_pred CcceecCCC--------ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCC
Confidence 998643211 123346899999999999999999999999999999999999999653221 111111111
Q ss_pred c--ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 F--PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
+ +......+++ .+.+++.+||+.||++|||++|++++
T Consensus 224 ~~~~~~~~~~~~~----------------------~~~~li~~~l~~dp~~Rps~~~~l~h 262 (304)
T 2jam_A 224 YEFESPFWDDISE----------------------SAKDFICHLLEKDPNERYTCEKALSH 262 (304)
T ss_dssp CCCCTTTTTTSCH----------------------HHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred CCCCccccccCCH----------------------HHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1 0001111111 12236778999999999999999874
No 195
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=8.1e-40 Score=349.05 Aligned_cols=209 Identities=28% Similarity=0.333 Sum_probs=177.4
Q ss_pred CccCHHHHHHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCC-----CCCceeE
Q 004218 443 QMISYDELRRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTR-----HRNLVKL 516 (767)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~~ 516 (767)
..+++.+.....++|++.+.||+|+||.||+|++. +++.||||++.. .....+.+..|+++++.+. ||||+++
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~-~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~ 101 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN-IKKYTRSAKIEADILKKIQNDDINNNNIVKY 101 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS-CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc-chhhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence 34555555666789999999999999999999975 588999999863 2233456778999999986 9999999
Q ss_pred EeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCe
Q 004218 517 ITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNI 596 (767)
Q Consensus 517 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NI 596 (767)
++++. ..+..++||||+ +++|.+++.... ...+++.++..++.|++.||+|||++ +|+||||||+||
T Consensus 102 ~~~~~-----~~~~~~lv~e~~-~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NI 168 (360)
T 3llt_A 102 HGKFM-----YYDHMCLIFEPL-GPSLYEIITRNN----YNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENI 168 (360)
T ss_dssp EEEEE-----ETTEEEEEECCC-CCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred cceee-----ECCeeEEEEcCC-CCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccE
Confidence 99964 345679999999 889999997654 23489999999999999999999999 999999999999
Q ss_pred eeCC-------------------------CCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCc
Q 004218 597 LLDE-------------------------DMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTA 651 (767)
Q Consensus 597 l~~~-------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~ 651 (767)
+++. ++.+||+|||+++..... .....||+.|+|||++.+..++.+
T Consensus 169 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~ 239 (360)
T 3llt_A 169 LLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY---------HGSIINTRQYRAPEVILNLGWDVS 239 (360)
T ss_dssp EESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC---------CCSCCSCGGGCCHHHHTTCCCCTT
T ss_pred EEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCC---------CcCccCcccccCcHHHcCCCCCCc
Confidence 9975 789999999999754321 123568999999999999999999
Q ss_pred ccchhhhHHHHHHHhCCCCCCCc
Q 004218 652 GDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 652 ~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+||||+||++|+|++|+.||...
T Consensus 240 ~DiwslG~il~ell~g~~pf~~~ 262 (360)
T 3llt_A 240 SDMWSFGCVLAELYTGSLLFRTH 262 (360)
T ss_dssp HHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cchHHHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999653
No 196
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=6e-40 Score=344.06 Aligned_cols=272 Identities=24% Similarity=0.314 Sum_probs=190.5
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC-cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST-GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
++|++.+.||+|+||.||+|.+. +++.||+|++..... .....+.+|+++++.++||||+++++++. .....+
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~ 76 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-----TEKSLT 76 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEE-----CSSCEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEe-----eCCEEE
Confidence 57899999999999999999976 589999999864432 22335668999999999999999999964 455679
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccch
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLA 612 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 612 (767)
+||||++ |+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.+
T Consensus 77 lv~e~~~-~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a 147 (324)
T 3mtl_A 77 LVFEYLD-KDLKQYLDDCG-----NIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLA 147 (324)
T ss_dssp EEEECCS-EEHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEE
T ss_pred EEecccc-cCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCccc
Confidence 9999997 49999887643 3489999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh---hh
Q 004218 613 RSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE---SN 688 (767)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~---~~ 688 (767)
+...... .......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||........ ...... ..
T Consensus 148 ~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~i~~~~~~~ 220 (324)
T 3mtl_A 148 RAKSIPT------KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQ-LHFIFRILGTP 220 (324)
T ss_dssp ECC------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCC
T ss_pred ccccCCc------cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHhCCC
Confidence 7543221 11233468999999999876 5689999999999999999999999976432211 111111 00
Q ss_pred cccchhhhcc-HHHHHhhhc--chhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPKNAQQVLD-RELRQLMMS--SESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~~~~~~~~-~~l~~~~~~--~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.+........ ......... ...........+...+.+++.+||+.||++|||++|++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 282 (324)
T 3mtl_A 221 TEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH 282 (324)
T ss_dssp CTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred ChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence 1111111111 111100000 0000000001111223347779999999999999999874
No 197
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=365.00 Aligned_cols=255 Identities=25% Similarity=0.379 Sum_probs=197.1
Q ss_pred ccccccceEEEEEEeC---CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEEEEee
Q 004218 462 LIGSGSFGSVYKGYLR---EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLALVYEF 537 (767)
Q Consensus 462 ~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~ 537 (767)
.||+|+||.||+|.++ ++..||||+++... ....+.+.+|++++++++||||++++++|.. +..++||||
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~------~~~~lv~E~ 416 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------EALMLVMEM 416 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES------SSEEEEEEC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc------CCeEEEEEe
Confidence 7999999999999864 46679999997543 3456789999999999999999999999753 347999999
Q ss_pred cCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchhhhhh
Q 004218 538 LGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLARSLLE 617 (767)
Q Consensus 538 ~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~ 617 (767)
+++|+|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 417 ~~~g~L~~~l~~~~-----~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~ 488 (613)
T 2ozo_A 417 AGGGPLHKFLVGKR-----EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGA 488 (613)
T ss_dssp CTTCBHHHHHTTCT-----TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-
T ss_pred CCCCcHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccC
Confidence 99999999997543 3499999999999999999999999 999999999999999999999999999987543
Q ss_pred hcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhcccchhhh
Q 004218 618 RIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPKNAQQV 696 (767)
Q Consensus 618 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (767)
..... .......+++.|+|||++.+..++.++|||||||++|||++ |+.||...... .....+........+..
T Consensus 489 ~~~~~---~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~~~~~~p~~ 563 (613)
T 2ozo_A 489 DDSYY---TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQGKRMECPPE 563 (613)
T ss_dssp ----------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HHHHHHHTTCCCCCCTT
T ss_pred CCcee---eeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcCCCCCCCCc
Confidence 22111 11122335688999999998899999999999999999998 99999664321 22222222221111122
Q ss_pred ccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 004218 697 LDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLK 757 (767)
Q Consensus 697 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 757 (767)
+.+.+ .+++.+||+.||++|||+.++++.|+.+......
T Consensus 564 ~~~~l----------------------~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~ 602 (613)
T 2ozo_A 564 CPPEL----------------------YALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 602 (613)
T ss_dssp CCHHH----------------------HHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSC
T ss_pred CCHHH----------------------HHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhcc
Confidence 22222 2266789999999999999999999998776643
No 198
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=5e-39 Score=354.84 Aligned_cols=205 Identities=27% Similarity=0.414 Sum_probs=176.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|.+.+.||+|+||.||+|+++ +|+.||+|++... .....+.+.+|++++++++||||+++++++. ...
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~-----~~~ 258 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFE-----TKT 258 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----eCC
Confidence 367889999999999999999986 5999999999643 2334567889999999999999999999853 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.+|+||||++||+|.+++...... ...+++..+..++.||+.||+|||++ +|+||||||+||+++.+|.+||+||
T Consensus 259 ~l~lVmE~~~gg~L~~~l~~~~~~--~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DF 333 (543)
T 3c4z_A 259 DLCLVMTIMNGGDIRYHIYNVDED--NPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDL 333 (543)
T ss_dssp EEEEEECCCTTCBHHHHHHTSSTT--SCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEEeccCCCHHHHHHHhhcc--cccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeec
Confidence 789999999999999998764321 23599999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
|+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 334 Gla~~~~~~~------~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~ 392 (543)
T 3c4z_A 334 GLAVELKAGQ------TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR 392 (543)
T ss_dssp TTCEECCTTC------CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred ceeeeccCCC------cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence 9998653321 1123457999999999999999999999999999999999999999764
No 199
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=1.7e-39 Score=341.35 Aligned_cols=204 Identities=25% Similarity=0.405 Sum_probs=163.2
Q ss_pred HHHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC--cchhhHHHHHHHHhcCCCCCceeEEeeeecCCcc
Q 004218 450 LRRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST--GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 450 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 526 (767)
.....++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|++++++++||||+++++++.
T Consensus 29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 103 (329)
T 3gbz_A 29 SATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIH----- 103 (329)
T ss_dssp ---CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEE-----
T ss_pred cccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEe-----
Confidence 3455679999999999999999999965 589999999964432 23456789999999999999999999954
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee-----CCC
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL-----DED 601 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~-----~~~ 601 (767)
.....++||||+++ +|.+++..... +++..+..++.|++.||+|||++ +|+||||||+||++ +..
T Consensus 104 ~~~~~~lv~e~~~~-~L~~~~~~~~~------~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~ 173 (329)
T 3gbz_A 104 HNHRLHLIFEYAEN-DLKKYMDKNPD------VSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASET 173 (329)
T ss_dssp ETTEEEEEEECCSE-EHHHHHHHCTT------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----C
T ss_pred cCCEEEEEEecCCC-CHHHHHhhcCC------CCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCcc
Confidence 45678999999985 99999976543 89999999999999999999999 99999999999999 455
Q ss_pred CceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCC-CCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 602 MTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 602 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+.+||+|||.++....... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||...
T Consensus 174 ~~~kl~Dfg~a~~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 241 (329)
T 3gbz_A 174 PVLKIGDFGLARAFGIPIR------QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGD 241 (329)
T ss_dssp CEEEECCTTHHHHHC-----------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ceEEECcCCCccccCCccc------ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCC
Confidence 6699999999987643211 12334579999999998874 4899999999999999999999999654
No 200
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=1.6e-39 Score=346.72 Aligned_cols=199 Identities=24% Similarity=0.413 Sum_probs=173.1
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+++++.++||||+++++++. .++..
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 106 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFY-----SDGEI 106 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEE-----ETTEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEE-----ECCEE
Confidence 357999999999999999999976 58999999997553 334567889999999999999999999864 44567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHN-DCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
++||||+++|+|.+++..... +++..+..++.|++.||+|||+ . +|+||||||+||+++.++.+||+|||
T Consensus 107 ~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~i~~~i~~~l~~lh~~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg 177 (360)
T 3eqc_A 107 SICMEHMDGGSLDQVLKKAGR------IPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFG 177 (360)
T ss_dssp EEEECCCTTCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHhC---CEEcCCccHHHEEECCCCCEEEEECC
Confidence 999999999999999976542 8999999999999999999998 5 89999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
++....... .....||+.|+|||++.+..++.++||||+||++|+|++|+.||...
T Consensus 178 ~~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 233 (360)
T 3eqc_A 178 VSGQLIDSM--------ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP 233 (360)
T ss_dssp CCHHHHHHC------------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred CCccccccc--------ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 997664431 12346899999999999999999999999999999999999999654
No 201
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=2.4e-39 Score=343.98 Aligned_cols=210 Identities=26% Similarity=0.393 Sum_probs=172.2
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc---cc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF---KN 527 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~---~~ 527 (767)
.++|++.+.||+|+||.||+|.+. +|+.||+|++.... ......+.+|+++++.++||||+++++++..... ..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 468999999999999999999974 58999999985443 2334578899999999999999999999865321 12
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
.+.+++||||+++ +|.+.+.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~ 166 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVL-----VKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLA 166 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEEC
T ss_pred CceEEEEEeccCC-CHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEc
Confidence 4578999999975 8887776543 2399999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
|||+++........ .........||+.|+|||++.+ ..++.++||||+||++|+|++|+.||...
T Consensus 167 Dfg~a~~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 232 (351)
T 3mi9_A 167 DFGLARAFSLAKNS--QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN 232 (351)
T ss_dssp CCTTCEECCCCSSS--SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cchhcccccccccc--cccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999865432211 1122234568999999998876 45799999999999999999999999764
No 202
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5e-38 Score=362.43 Aligned_cols=375 Identities=19% Similarity=0.233 Sum_probs=293.8
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEe
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYN 81 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 81 (767)
+++++|||++|+|+ .+|...|.++++|++|+|++|+|.++.|++|.++++|++|+|++|+|++..+..|..+++|++|+
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 36899999999998 88888888899999999999999988888999999999999999999966667899999999999
Q ss_pred ecCccccCCCCCCccccccccCCCCCCEEECcCCccee-ecCchhhhhccccCeEEccCCcccccCCccccCCCCC----
Q 004218 82 IGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEG-EIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSL---- 156 (767)
Q Consensus 82 l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L---- 156 (767)
|++|++++.+. ..+.++++|++|++++|++++ ..|..++.+++ |++|++++|++++..+..|..+.++
T Consensus 131 Ls~N~l~~l~~------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 131 AVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CTTSCCCCSTT------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCcCCCCCh------hhhhcCcccCeeccccCccccCCCchhhccchh-hhhhcccCccccccccccccchhhhhhhh
Confidence 99999986533 247889999999999999975 35788888888 9999999999987766665443322
Q ss_pred CEEECcCCcCcccCc-----------------------------------------------------------------
Q 004218 157 TLLNLSYNSISGEIL----------------------------------------------------------------- 171 (767)
Q Consensus 157 ~~L~l~~n~i~~~~~----------------------------------------------------------------- 171 (767)
..++++.|.+..+.+
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 234444443321110
Q ss_pred --------------------------------------cccCCCCCCCEEEccCCccccccCc-----------------
Q 004218 172 --------------------------------------TEIGQLQELQSLDLAGNQISGSIPN----------------- 196 (767)
Q Consensus 172 --------------------------------------~~~~~l~~L~~L~L~~n~i~~~~~~----------------- 196 (767)
..+....+|+.|++.+|.+....+.
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 0112223455555555554422111
Q ss_pred --CcccCCCCceeeCCCCcCCCC-------------------------CcccccCccccccccccCcccCCCCC-hhhcc
Q 004218 197 --TLGNLKKLNQIDLSGNELASE-------------------------IPTSFGNFQNLLSIDLSNNKLNGNIP-KEILS 248 (767)
Q Consensus 197 --~~~~l~~L~~L~L~~N~l~~~-------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~ 248 (767)
....+++|+.|++++|.+... .+..+..+++|+.+++++|......+ ..+..
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 122456777777777766421 22345566777777777766654443 45667
Q ss_pred cccccceeecccccCCCCCchhhcCCCceeEEEccCCCC-CCCCCcccccCcccceeeccCccccCCCCchhhccCCceE
Q 004218 249 LSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGL-SGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEV 327 (767)
Q Consensus 249 l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 327 (767)
+.++ ..++++.|.+.+..+..+..+++|+.|+|++|.+ .+..|..|..+++|+.|+|++|+|++..|..|.++++|+.
T Consensus 444 l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 444 LRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp CTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 7777 4559999999989999999999999999999974 4567889999999999999999999999999999999999
Q ss_pred EEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCCc-cc-cccccccccCCcCccc
Q 004218 328 LDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREG-IF-RHTSMVHLEGNPKLCL 385 (767)
Q Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~-~~~~~~~l~~Np~~c~ 385 (767)
|+|++|+|++..|..|..+++|+.|++++|++++.+|... .+ .++..+++.+|||.|.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999889999999999999999999999988753 33 5788999999999995
No 203
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.5e-39 Score=336.86 Aligned_cols=200 Identities=27% Similarity=0.365 Sum_probs=166.7
Q ss_pred cCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCc--chhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTG--TWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~--~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
++|++.+.||+|+||.||+|.+.. |+.||+|++...... ..+.+.+|++++++++||||+++++++. .....
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~ 77 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFR-----RKRRL 77 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheee-----cCCeE
Confidence 689999999999999999999764 899999998544322 2466789999999999999999999964 45567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||+++++|.+++.... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.
T Consensus 78 ~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~ 148 (311)
T 4agu_A 78 HLVFEYCDHTVLHELDRYQR------GVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGF 148 (311)
T ss_dssp EEEEECCSEEHHHHHHHTSS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred EEEEEeCCCchHHHHHhhhc------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCC
Confidence 99999999999999887543 389999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+........ ......||..|+|||++.+ ..++.++||||+|+++|+|++|+.||...
T Consensus 149 ~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 206 (311)
T 4agu_A 149 ARLLTGPSD------YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGK 206 (311)
T ss_dssp CEECC------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred chhccCccc------ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence 976542211 1133468999999999876 56799999999999999999999999664
No 204
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=3.8e-39 Score=338.82 Aligned_cols=261 Identities=27% Similarity=0.425 Sum_probs=198.5
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcE--EEEEEeecc-CCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCcccce
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGIS--VAVKVLDIE-STGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~--vavK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~ 529 (767)
++|++.+.||+|+||.||+|.+. ++.. ||+|.+... .....+.+.+|+++++++ +||||+++++++. ..+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-----~~~ 99 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACE-----HRG 99 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEE-----ETT
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeee-----eCC
Confidence 68999999999999999999965 4654 499988643 334557789999999999 8999999999964 445
Q ss_pred eeEEEEeecCCCChhhhhcccCC----------CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeC
Q 004218 530 FLALVYEFLGNGSLGDWIHGERK----------NEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLD 599 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~----------~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~ 599 (767)
..++||||+++|+|.+++...+. ......+++.+++.++.|++.||+|||++ +|+||||||+||+++
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~ 176 (327)
T 1fvr_A 100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVG 176 (327)
T ss_dssp EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC
T ss_pred ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEc
Confidence 67999999999999999976531 01124599999999999999999999999 999999999999999
Q ss_pred CCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCC
Q 004218 600 EDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGE 678 (767)
Q Consensus 600 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~ 678 (767)
.++.+||+|||+++..... .......+++.|+|||++.+..++.++||||+|+++|+|++ |+.||......
T Consensus 177 ~~~~~kL~Dfg~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~- 248 (327)
T 1fvr_A 177 ENYVAKIADFGLSRGQEVY-------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA- 248 (327)
T ss_dssp GGGCEEECCTTCEESSCEE-------CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-
T ss_pred CCCeEEEcccCcCcccccc-------ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHH-
Confidence 9999999999999743221 11123346889999999988888999999999999999998 99999653221
Q ss_pred cchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 679 VSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
.....+...........+++. +.+++.+||+.||++|||++|++++|+.+...
T Consensus 249 -~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 301 (327)
T 1fvr_A 249 -ELYEKLPQGYRLEKPLNCDDE----------------------VYDLMRQCWREKPYERPSFAQILVSLNRMLEE 301 (327)
T ss_dssp -HHHHHGGGTCCCCCCTTBCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred -HHHHHhhcCCCCCCCCCCCHH----------------------HHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 111111111111111111111 22267789999999999999999999988764
No 205
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=5.3e-40 Score=367.04 Aligned_cols=260 Identities=28% Similarity=0.417 Sum_probs=204.2
Q ss_pred HhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
..++|++.+.||+|+||.||+|.+.++..||||++.... ...+.+.+|++++++++||||+++++++.. ...+
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~------~~~~ 337 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EPIY 337 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSCE
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee------ccce
Confidence 456788999999999999999999888889999997543 345789999999999999999999998642 3469
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccch
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLA 612 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 612 (767)
+||||+++|+|.+++.... +..+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 338 lv~e~~~~gsL~~~l~~~~----~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a 410 (535)
T 2h8h_A 338 IVTEYMSKGSLLDFLKGET----GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLA 410 (535)
T ss_dssp EEECCCTTEEHHHHHSHHH----HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTST
T ss_pred EeeehhcCCcHHHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccc
Confidence 9999999999999997532 23489999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhccc
Q 004218 613 RSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPK 691 (767)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~ 691 (767)
+....... .......++..|+|||++.+..++.++|||||||++|||++ |+.||...... .....+...+..
T Consensus 411 ~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~--~~~~~i~~~~~~ 483 (535)
T 2h8h_A 411 RLIEDNEY-----TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--EVLDQVERGYRM 483 (535)
T ss_dssp TTCCCHHH-----HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH--HHHHHHHTTCCC
T ss_pred eecCCCce-----ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCCC
Confidence 86543211 11122346788999999988899999999999999999999 99998653221 111222221111
Q ss_pred chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 692 NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 692 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
.....+.+. +.+++.+||+.||++|||++++++.|+.+....
T Consensus 484 ~~~~~~~~~----------------------l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~ 525 (535)
T 2h8h_A 484 PCPPECPES----------------------LHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 525 (535)
T ss_dssp CCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCC
T ss_pred CCCCCCCHH----------------------HHHHHHHHcCCChhHCcCHHHHHHHHHHHhhcc
Confidence 111111111 222677899999999999999999998765433
No 206
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=2.3e-39 Score=340.17 Aligned_cols=262 Identities=20% Similarity=0.279 Sum_probs=200.1
Q ss_pred ccCHHHHHHHhcCCCCC-CccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcC-CCCCceeEEe
Q 004218 444 MISYDELRRATGNFSHE-NLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNT-RHRNLVKLIT 518 (767)
Q Consensus 444 ~~~~~~~~~~~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~~~~ 518 (767)
.+.+.......++|.+. +.||+|+||.||+|... +++.||+|++.... ......+.+|+.+++.+ .||||+++++
T Consensus 17 n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~ 96 (327)
T 3lm5_A 17 NLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96 (327)
T ss_dssp CCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEE
T ss_pred hhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 34444555667788887 88999999999999976 48999999986542 23456788999999999 5699999999
Q ss_pred eeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee
Q 004218 519 SCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL 598 (767)
Q Consensus 519 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~ 598 (767)
++. .....++||||+++|+|.+++.... ...+++.+++.++.|++.||+|||++ +|+||||||+||++
T Consensus 97 ~~~-----~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~ 164 (327)
T 3lm5_A 97 VYE-----NTSEIILILEYAAGGEIFSLCLPEL----AEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILL 164 (327)
T ss_dssp EEE-----CSSEEEEEEECCTTEEGGGGGSSCC-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred EEE-----eCCeEEEEEEecCCCcHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEE
Confidence 954 4566799999999999999986532 24499999999999999999999999 99999999999999
Q ss_pred CC---CCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcc
Q 004218 599 DE---DMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESF 675 (767)
Q Consensus 599 ~~---~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~ 675 (767)
+. ++.+||+|||+++...... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||....
T Consensus 165 ~~~~~~~~~kL~Dfg~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 237 (327)
T 3lm5_A 165 SSIYPLGDIKIVDFGMSRKIGHAC-------ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGED 237 (327)
T ss_dssp SCBTTBCCEEECCGGGCEEC----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred ecCCCCCcEEEeeCccccccCCcc-------ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 97 7899999999998654321 1133568999999999999999999999999999999999999996532
Q ss_pred cCCcchhhHhh--hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 676 AGEVSLVKWVE--SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 676 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.... ...... ..++......+++ .+.+++.+||+.||++|||++|++++
T Consensus 238 ~~~~-~~~i~~~~~~~~~~~~~~~~~----------------------~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 238 NQET-YLNISQVNVDYSEETFSSVSQ----------------------LATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp HHHH-HHHHHHTCCCCCTTTTTTSCH----------------------HHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred chHH-HHHHHhcccccCchhhcccCH----------------------HHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 2111 001110 0111111111111 12236778999999999999999875
No 207
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-39 Score=346.28 Aligned_cols=273 Identities=23% Similarity=0.302 Sum_probs=193.3
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCC-cccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLD-FKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+++.+|+++++.++||||+++++++.... .....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 468999999999999999999975 59999999985432 223567889999999999999999999976432 22335
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.+++||||+ +++|.+++.... +++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~~-------l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Df 172 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHEK-------LGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDF 172 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCC
T ss_pred eEEEEEecC-CCCHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEee
Confidence 679999999 789999997532 89999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh-
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES- 687 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~- 687 (767)
|+++..... .....||..|+|||++.+ ..++.++||||+||++|||++|+.||....... .+......
T Consensus 173 g~a~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~~~ 242 (367)
T 1cm8_A 173 GLARQADSE---------MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD-QLKEIMKVT 242 (367)
T ss_dssp TTCEECCSS---------CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHH
T ss_pred ecccccccc---------cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhc
Confidence 999764321 233568999999998876 678999999999999999999999996532211 11111111
Q ss_pred -hcccc-hhhhccHHHHHhhhcch----hhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 688 -NFPKN-AQQVLDRELRQLMMSSE----SQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 688 -~~~~~-~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..+.. .........+..+...+ .............+.+++.+||..||++|||++|++++
T Consensus 243 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h 308 (367)
T 1cm8_A 243 GTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH 308 (367)
T ss_dssp CCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred CCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence 11111 11111111111111000 00000000111223347779999999999999999884
No 208
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=5.7e-39 Score=343.11 Aligned_cols=275 Identities=21% Similarity=0.234 Sum_probs=193.4
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCC-cccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLD-FKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.+++.++||||+++++++.... .....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 468999999999999999999975 58899999986532 234567889999999999999999999976432 23345
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++ +|.+++.. .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 104 ~~~lv~e~~~~-~l~~~~~~--------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Df 171 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF 171 (371)
T ss_dssp EEEEEEECCSE-EHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCC
T ss_pred ceEEEEEcCCC-CHHHHHhh--------ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEe
Confidence 78999999975 88888852 289999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||....... ..........
T Consensus 172 g~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~ 243 (371)
T 2xrw_A 172 GLARTAGTSF-------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID-QWNKVIEQLG 243 (371)
T ss_dssp CC-----------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHC-CC
T ss_pred eccccccccc-------ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhC
Confidence 9998654321 1233568999999999999999999999999999999999999996542211 1111111000
Q ss_pred --ccchhhhccHHHHHhhhcchh----------------hHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 690 --PKNAQQVLDRELRQLMMSSES----------------QTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 690 --~~~~~~~~~~~l~~~~~~~~~----------------~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
.........+.+.......+. ............+.+++.+||+.||++|||++|++++=
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp 320 (371)
T 2xrw_A 244 TPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHP 320 (371)
T ss_dssp CCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred CCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCc
Confidence 000111111111111111000 00011112233344578899999999999999999863
No 209
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=5e-39 Score=364.85 Aligned_cols=253 Identities=26% Similarity=0.362 Sum_probs=195.0
Q ss_pred CccccccceEEEEEEeC---CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeEEEE
Q 004218 461 NLIGSGSFGSVYKGYLR---EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLALVY 535 (767)
Q Consensus 461 ~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~ 535 (767)
+.||+|+||.||+|.+. .++.||||+++... ....+++.+|++++++++||||+++++++.. +..++||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~------~~~~lv~ 448 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA------ESWMLVM 448 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES------SSEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------CCEEEEE
Confidence 47999999999999753 36789999996543 2345789999999999999999999999742 2368999
Q ss_pred eecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchhhh
Q 004218 536 EFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLARSL 615 (767)
Q Consensus 536 e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~ 615 (767)
||+++|+|.+++.... .+++.++..|+.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 449 E~~~~g~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~ 519 (635)
T 4fl3_A 449 EMAELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL 519 (635)
T ss_dssp ECCTTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHT
T ss_pred EccCCCCHHHHHhhCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCcccc
Confidence 9999999999997543 389999999999999999999999 9999999999999999999999999999876
Q ss_pred hhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhhhhcccchh
Q 004218 616 LERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVESNFPKNAQ 694 (767)
Q Consensus 616 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 694 (767)
....... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... .....+........+
T Consensus 520 ~~~~~~~---~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~~~~~~p 594 (635)
T 4fl3_A 520 RADENYY---KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKGERMGCP 594 (635)
T ss_dssp TC----------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCCCCCC
T ss_pred ccCcccc---ccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCCCCCC
Confidence 4432111 11123346788999999998899999999999999999998 99999654221 122222222111112
Q ss_pred hhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 695 QVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 695 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
..+++. +.+++.+||+.||++|||++++++.|+++....
T Consensus 595 ~~~~~~----------------------l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l 633 (635)
T 4fl3_A 595 AGCPRE----------------------MYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 633 (635)
T ss_dssp TTCCHH----------------------HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHH----------------------HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence 222222 122667899999999999999999999887654
No 210
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.4e-39 Score=346.06 Aligned_cols=273 Identities=22% Similarity=0.277 Sum_probs=183.6
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCC-cccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLD-FKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+++++.++||||+++++++.... .....
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 478999999999999999999965 58999999986432 234567889999999999999999999975431 23345
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+ +++|.+++... .+++..+..++.|+++||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DF 176 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ-------KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDF 176 (367)
T ss_dssp CCEEEEECC-CEECC-----C-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC-
T ss_pred eEEEEeccc-CCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeec
Confidence 679999999 67999988653 299999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
|+++..... .....||..|+|||++.+ ..++.++||||+||++|||++|+.||....... .+.......
T Consensus 177 G~a~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~~~ 246 (367)
T 2fst_X 177 GLARHTADE---------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID-QLKLILRLV 246 (367)
T ss_dssp -----------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHH
T ss_pred ccccccccc---------CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHh
Confidence 999765322 233568999999999877 678999999999999999999999996532211 111111110
Q ss_pred --cccc-hhhhccHHHHHhhhcc---h-hhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 --FPKN-AQQVLDRELRQLMMSS---E-SQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 --~~~~-~~~~~~~~l~~~~~~~---~-~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.+.. .........+..+... + .............+.+++.+||+.||++|||+.|++++
T Consensus 247 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 247 GTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp CSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred CCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 0000 1111111111111110 0 00001111112223347779999999999999999875
No 211
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.8e-39 Score=334.67 Aligned_cols=251 Identities=26% Similarity=0.381 Sum_probs=192.6
Q ss_pred HHhcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
...++|++.+.||+|+||.||+|.+.. |+.||+|++... ...+.+.+|+++++.++||||+++++++. ....
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 98 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVKYYGSYF-----KNTD 98 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT--SCCHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTE
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch--HHHHHHHHHHHHHHhCCCCCCccEEEEEE-----eCCE
Confidence 346789999999999999999999764 899999998743 34577899999999999999999999964 3456
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 99 ~~lv~e~~~~~~L~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg 170 (314)
T 3com_A 99 LWIVMEYCGAGSVSDIIRLRN-----KTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFG 170 (314)
T ss_dssp EEEEEECCTTEEHHHHHHHHT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCT
T ss_pred EEEEeecCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecc
Confidence 799999999999999986432 3489999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFP 690 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 690 (767)
.+........ ......||..|+|||++.+..++.++||||+|+++|+|++|+.||....... .........+
T Consensus 171 ~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~ 242 (314)
T 3com_A 171 VAGQLTDTMA------KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR--AIFMIPTNPP 242 (314)
T ss_dssp TCEECBTTBS------CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHHSCC
T ss_pred cchhhhhhcc------ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHhcCCC
Confidence 9976543211 1233468999999999999899999999999999999999999996532111 0011111111
Q ss_pred cc--hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 691 KN--AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 691 ~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.. ....++. .+.+++.+||+.||++|||+.|++++
T Consensus 243 ~~~~~~~~~~~----------------------~l~~li~~~l~~dp~~Rpt~~~ll~~ 279 (314)
T 3com_A 243 PTFRKPELWSD----------------------NFTDFVKQCLVKSPEQRATATQLLQH 279 (314)
T ss_dssp CCCSSGGGSCH----------------------HHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred cccCCcccCCH----------------------HHHHHHHHHccCChhhCcCHHHHHhC
Confidence 00 0111111 12236778999999999999999874
No 212
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=8.7e-39 Score=329.06 Aligned_cols=247 Identities=22% Similarity=0.353 Sum_probs=196.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|... +++.||+|++... .....+.+.+|+++++.++||||+++++++. ...
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 87 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFH-----DRK 87 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEE-----cCC
Confidence 367999999999999999999976 4789999998643 2234567889999999999999999999964 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++|+|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Df 158 (284)
T 2vgo_A 88 RIYLMLEFAPRGELYKELQKHG------RFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADF 158 (284)
T ss_dssp EEEEEECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCC
T ss_pred EEEEEEEeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecc
Confidence 7799999999999999997653 289999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|.+...... ......|++.|+|||++.+..++.++||||+|+++|+|++|+.||........ .........
T Consensus 159 g~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~ 229 (284)
T 2vgo_A 159 GWSVHAPSL--------RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTET-HRRIVNVDL 229 (284)
T ss_dssp TTCEECSSS--------CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHTTCC
T ss_pred cccccCccc--------ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHH-HHHHhcccc
Confidence 998654221 11335689999999999999999999999999999999999999965321110 000000000
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..+..++. .+.+++.+||+.||.+|||++|++++
T Consensus 230 --~~~~~~~~----------------------~~~~li~~~l~~~p~~Rps~~~ll~h 263 (284)
T 2vgo_A 230 --KFPPFLSD----------------------GSKDLISKLLRYHPPQRLPLKGVMEH 263 (284)
T ss_dssp --CCCTTSCH----------------------HHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred --CCCCcCCH----------------------HHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence 01111111 12236778999999999999999975
No 213
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=7.9e-39 Score=331.16 Aligned_cols=249 Identities=23% Similarity=0.336 Sum_probs=197.9
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccC---CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIES---TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|.+.+.||+|+||.||+|.+.+ ++.||+|++.... ....+.+.+|+.+++.++||||+++++++. ..+
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~ 88 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DND 88 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeec-----cCC
Confidence 4689999999999999999999764 8899999986542 234567889999999999999999999964 455
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++++|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 89 ~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 159 (294)
T 2rku_A 89 FVFVVLELCRRRSLLELHKRRK------ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDF 159 (294)
T ss_dssp EEEEEEECCTTCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCC
T ss_pred EEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEec
Confidence 6799999999999999987643 389999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|.+....... .......||+.|+|||++.+..++.++||||+|+++|+|++|+.||........ .........
T Consensus 160 g~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-~~~~~~~~~ 232 (294)
T 2rku_A 160 GLATKVEYDG------ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET-YLRIKKNEY 232 (294)
T ss_dssp TTCEECCSTT------CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHTTCC
T ss_pred cCceecccCc------cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHhhccC
Confidence 9997653221 112335689999999999998899999999999999999999999965322110 001101000
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..+..+++ .+.+++.+||+.||++|||++|++++
T Consensus 233 --~~~~~~~~----------------------~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 233 --SIPKHINP----------------------VAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp --CCCTTSCH----------------------HHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred --CCccccCH----------------------HHHHHHHHHcccChhhCcCHHHHhhC
Confidence 01111111 12236778999999999999999985
No 214
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=9.9e-39 Score=336.41 Aligned_cols=196 Identities=24% Similarity=0.311 Sum_probs=168.9
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCC-CCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTR-HRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++.. ...+.+.+|++++++++ ||||+++++++.. ......
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~---~~~~~~ 108 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKD---PVSRTP 108 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEEC---TTTCCE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeecc---CCCCce
Confidence 367999999999999999999964 589999999863 33577889999999997 9999999999753 235567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC-ceEEcccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM-TAKVGDFG 610 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~-~~kl~Dfg 610 (767)
++||||+++++|.+++.. +++.++..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||
T Consensus 109 ~lv~e~~~~~~l~~~~~~---------~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg 176 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLYQT---------LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWG 176 (330)
T ss_dssp EEEEECCCCCCHHHHGGG---------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred EEEEeccCchhHHHHHHh---------CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCC
Confidence 999999999999999853 88999999999999999999999 999999999999999776 89999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+++...... ......||..|+|||++.+ ..++.++||||+||++|+|++|+.||...
T Consensus 177 ~a~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~ 234 (330)
T 3nsz_A 177 LAEFYHPGQ-------EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG 234 (330)
T ss_dssp TCEECCTTC-------CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred CceEcCCCC-------ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence 997653321 1233468999999999877 66899999999999999999999999553
No 215
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=4.3e-39 Score=337.76 Aligned_cols=278 Identities=21% Similarity=0.285 Sum_probs=195.8
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCC--------
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLD-------- 524 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-------- 524 (767)
.++|++.+.||+|+||.||+|.+.. ++.||+|++........+.+.+|++++++++||||+++++++....
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 4689999999999999999999875 8999999997666666778999999999999999999999874321
Q ss_pred -cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeC-CCC
Q 004218 525 -FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLD-EDM 602 (767)
Q Consensus 525 -~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~-~~~ 602 (767)
.......++||||++ |+|.+++... .+++..++.++.|++.||+|||++ +|+||||||+||+++ +++
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~ 158 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG-------PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDL 158 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTT
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC-------CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCC
Confidence 234567899999998 5999999643 289999999999999999999999 999999999999997 567
Q ss_pred ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcch
Q 004218 603 TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSL 681 (767)
Q Consensus 603 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~ 681 (767)
.+||+|||.++........ ........+|..|+|||.+.+ ..++.++||||||+++|||++|+.||...... ..
T Consensus 159 ~~kl~Dfg~~~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~ 233 (320)
T 2i6l_A 159 VLKIGDFGLARIMDPHYSH---KGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL--EQ 233 (320)
T ss_dssp EEEECCCTTCBCC-----------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HH
T ss_pred eEEEccCccccccCCCccc---ccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH--HH
Confidence 9999999999865432111 111233457899999998765 67899999999999999999999999754321 11
Q ss_pred hhHhhhhcccchhh-------hccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 682 VKWVESNFPKNAQQ-------VLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 682 ~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
...+....+..... .....+.................+...+.+++.+||+.||++|||++|++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (320)
T 2i6l_A 234 MQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH 306 (320)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred HHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence 11111111111100 1111111111110000011111122233447779999999999999999874
No 216
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.1e-38 Score=339.55 Aligned_cols=258 Identities=24% Similarity=0.411 Sum_probs=199.2
Q ss_pred HHHHHHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCc--------chhhHHHHHHHHhcC-CCCCceeE
Q 004218 447 YDELRRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTG--------TWKSFFAECEALRNT-RHRNLVKL 516 (767)
Q Consensus 447 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~--------~~~~~~~e~~~l~~l-~h~niv~~ 516 (767)
+.......++|++.+.||+|+||.||+|.+. +|+.||||++...... ..+.+.+|+.+++++ +||||+++
T Consensus 86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 165 (365)
T 2y7j_A 86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL 165 (365)
T ss_dssp HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCE
T ss_pred chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence 3445566778999999999999999999986 6999999998654321 135678999999998 79999999
Q ss_pred EeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCe
Q 004218 517 ITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNI 596 (767)
Q Consensus 517 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NI 596 (767)
++++. .....++||||+++++|.+++.... .+++..+..++.|++.||+|||+. ||+||||||+||
T Consensus 166 ~~~~~-----~~~~~~lv~e~~~g~~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NI 231 (365)
T 2y7j_A 166 IDSYE-----SSSFMFLVFDLMRKGELFDYLTEKV------ALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENI 231 (365)
T ss_dssp EEEEE-----BSSEEEEEECCCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred EEEEe-----eCCEEEEEEEeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHE
Confidence 99854 4566799999999999999997543 399999999999999999999999 999999999999
Q ss_pred eeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccC------CCCCCCcccchhhhHHHHHHHhCCCC
Q 004218 597 LLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL------GEKPSTAGDVYSFGVMLLEIFTGMSP 670 (767)
Q Consensus 597 l~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~slG~il~el~tg~~p 670 (767)
+++.++.+||+|||++....... ......||+.|+|||++. ...++.++|||||||++|+|++|+.|
T Consensus 232 l~~~~~~ikl~DfG~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~p 304 (365)
T 2y7j_A 232 LLDDNMQIRLSDFGFSCHLEPGE-------KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPP 304 (365)
T ss_dssp EECTTCCEEECCCTTCEECCTTC-------CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCS
T ss_pred EECCCCCEEEEecCcccccCCCc-------ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCC
Confidence 99999999999999997654321 123456899999999875 33578999999999999999999999
Q ss_pred CCCcccCCcchhhHh-hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 671 THESFAGEVSLVKWV-ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 671 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
|...... .....+ ...+...... .......+.+++.+||+.||++|||+.|++++
T Consensus 305 f~~~~~~--~~~~~i~~~~~~~~~~~--------------------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 360 (365)
T 2y7j_A 305 FWHRRQI--LMLRMIMEGQYQFSSPE--------------------WDDRSSTVKDLISRLLQVDPEARLTAEQALQH 360 (365)
T ss_dssp SCCSSHH--HHHHHHHHTCCCCCHHH--------------------HSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred CCCCCHH--HHHHHHHhCCCCCCCcc--------------------cccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 9653211 111111 1111100000 00001112337778999999999999999874
No 217
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=8.4e-39 Score=355.09 Aligned_cols=248 Identities=26% Similarity=0.349 Sum_probs=191.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ......+.+|+++++.++||||+++++++. ....
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~ 110 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFE-----DKRN 110 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCCE
Confidence 457999999999999999999976 58899999986542 334577899999999999999999999964 4566
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC---CCceEEc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE---DMTAKVG 607 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~ 607 (767)
+++||||+++|+|.+++..... +++..+..++.|++.||+|||++ +|+||||||+||+++. ++.+||+
T Consensus 111 ~~lv~e~~~~g~L~~~~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~ 181 (494)
T 3lij_A 111 YYLVMECYKGGELFDEIIHRMK------FNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIV 181 (494)
T ss_dssp EEEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred EEEEEecCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEE
Confidence 7999999999999998876432 89999999999999999999999 9999999999999976 4559999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh-h
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV-E 686 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~-~ 686 (767)
|||+++...... ......||+.|+|||++. ..++.++||||+||++|+|++|+.||...... .....+ .
T Consensus 182 DfG~a~~~~~~~-------~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~ 251 (494)
T 3lij_A 182 DFGLSAVFENQK-------KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ--EILRKVEK 251 (494)
T ss_dssp CCTTCEECBTTB-------CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH
T ss_pred ECCCCeECCCCc-------cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHh
Confidence 999997654321 123456999999999876 46899999999999999999999999653221 111111 1
Q ss_pred hhcc--cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 687 SNFP--KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 687 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..+. ......+++ .+.+++.+||+.||++|||+.|++++
T Consensus 252 ~~~~~~~~~~~~~s~----------------------~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 252 GKYTFDSPEWKNVSE----------------------GAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp TCCCCCSGGGTTSCH----------------------HHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred CCCCCCchhcccCCH----------------------HHHHHHHHHCCCChhhCccHHHHhcC
Confidence 1111 111111111 12236778999999999999999975
No 218
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7e-39 Score=339.29 Aligned_cols=204 Identities=25% Similarity=0.379 Sum_probs=164.7
Q ss_pred HHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC-----cchhhHHHHHHHHhcCCCCCceeEEeeeecCC
Q 004218 451 RRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST-----GTWKSFFAECEALRNTRHRNLVKLITSCSSLD 524 (767)
Q Consensus 451 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~ 524 (767)
....++|++.+.||+|+||.||+|.+. +|+.||||++..... ...+.+.+|+++++.++||||+++++++.
T Consensus 6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~--- 82 (346)
T 1ua2_A 6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG--- 82 (346)
T ss_dssp -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEEC---
T ss_pred HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEe---
Confidence 344678999999999999999999976 489999999864322 12356889999999999999999999964
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCce
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTA 604 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 604 (767)
.....++||||+++ +|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 83 --~~~~~~lv~e~~~~-~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~ 151 (346)
T 1ua2_A 83 --HKSNISLVFDFMET-DLEVIIKDNS-----LVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVL 151 (346)
T ss_dssp --CTTCCEEEEECCSE-EHHHHHTTCC-----SSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCE
T ss_pred --eCCceEEEEEcCCC-CHHHHHHhcC-----cCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCE
Confidence 44567999999986 8998887543 3488899999999999999999999 99999999999999999999
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCCC-CCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
||+|||+++....... ......||+.|+|||++.+. .++.++||||+||++|+|++|.+||...
T Consensus 152 kl~Dfg~a~~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~ 216 (346)
T 1ua2_A 152 KLADFGLAKSFGSPNR------AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD 216 (346)
T ss_dssp EECCCGGGSTTTSCCC------CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred EEEecccceeccCCcc------cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence 9999999986543211 12335689999999998764 5789999999999999999999998654
No 219
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=8.6e-39 Score=341.42 Aligned_cols=258 Identities=14% Similarity=0.108 Sum_probs=198.2
Q ss_pred HHhcCCCCCCccccccceEEEEEE------eCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCC---CCCceeEEeeeec
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGY------LREGISVAVKVLDIESTGTWKSFFAECEALRNTR---HRNLVKLITSCSS 522 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~------~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~ 522 (767)
...++|++.+.||+|+||.||+|. ..+++.||||++... ...++.+|+++++.++ |+||+++++++.
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~- 137 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHL- 137 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEE-
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeee-
Confidence 345789999999999999999994 345889999998643 3456778888888886 999999999964
Q ss_pred CCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC--
Q 004218 523 LDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE-- 600 (767)
Q Consensus 523 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~-- 600 (767)
..+..++||||+++|+|.+++...+.. ....+++..++.|+.|++.||+|||++ +|+||||||+||+++.
T Consensus 138 ----~~~~~~lv~e~~~~g~L~~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~ 209 (365)
T 3e7e_A 138 ----FQNGSVLVGELYSYGTLLNAINLYKNT-PEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGF 209 (365)
T ss_dssp ----CSSCEEEEECCCCSCBHHHHHHHHHTS-TTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGG
T ss_pred ----cCCCcEEEEeccCCCcHHHHHHHhhcc-cccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccc
Confidence 345569999999999999999753221 134599999999999999999999998 9999999999999998
Q ss_pred ---------CCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCC
Q 004218 601 ---------DMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPT 671 (767)
Q Consensus 601 ---------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~ 671 (767)
++.+||+|||+|+....... ........||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 210 ~~~~~~~~~~~~~kl~DFG~a~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf 285 (365)
T 3e7e_A 210 LEQDDEDDLSAGLALIDLGQSIDMKLFPK----GTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMK 285 (365)
T ss_dssp TCC------CTTEEECCCTTCEEGGGSCT----TEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCccccccccCCEEEeeCchhhhhhccCC----CceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCcc
Confidence 89999999999975532211 12234456999999999999999999999999999999999999998
Q ss_pred CCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCC-CCHHHHHHHHHH
Q 004218 672 HESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGR-IDIREALRRLKN 750 (767)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R-pt~~evl~~L~~ 750 (767)
............ .++.. .. .+. +.+++..|++.+|.+| |+++++.+.|++
T Consensus 286 ~~~~~~~~~~~~----~~~~~---~~------------------~~~----~~~~~~~~l~~~p~~r~~~~~~l~~~l~~ 336 (365)
T 3e7e_A 286 VKNEGGECKPEG----LFRRL---PH------------------LDM----WNEFFHVMLNIPDCHHLPSLDLLRQKLKK 336 (365)
T ss_dssp EEEETTEEEECS----CCTTC---SS------------------HHH----HHHHHHHHHCCCCTTCCCCHHHHHHHHHH
T ss_pred ccCCCCceeech----hcccc---Cc------------------HHH----HHHHHHHHcCCCCCCcchHHHHHHHHHHH
Confidence 543322111100 00000 00 111 1125567999999998 578888888887
Q ss_pred HHHH
Q 004218 751 AQKI 754 (767)
Q Consensus 751 ~~~~ 754 (767)
....
T Consensus 337 ~l~~ 340 (365)
T 3e7e_A 337 VFQQ 340 (365)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 220
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=1e-38 Score=353.82 Aligned_cols=250 Identities=26% Similarity=0.350 Sum_probs=196.0
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc--CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE--STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
..++|++.+.||+|+||.||+|.+. +++.||||++... .......+.+|++++++++||||+++++++. ...
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~ 94 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----DSS 94 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEE-----cCC
Confidence 3467999999999999999999976 5899999998643 2345678899999999999999999999954 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeC---CCCceEE
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLD---EDMTAKV 606 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~---~~~~~kl 606 (767)
.+++||||+++|+|.+++..... +++.++..++.|++.||+|||++ +|+||||||+||+++ .++.+||
T Consensus 95 ~~~lv~e~~~~~~L~~~~~~~~~------~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl 165 (486)
T 3mwu_A 95 SFYIVGELYTGGELFDEIIKRKR------FSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKI 165 (486)
T ss_dssp EEEEEECCCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEE
T ss_pred EEEEEEEcCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEE
Confidence 78999999999999998876442 99999999999999999999999 999999999999995 4567999
Q ss_pred ccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh
Q 004218 607 GDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 607 ~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~ 686 (767)
+|||+++...... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||....... .......
T Consensus 166 ~Dfg~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~ 236 (486)
T 3mwu_A 166 IDFGLSTCFQQNT-------KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD-ILKRVET 236 (486)
T ss_dssp CSCSCTTTBCCC-----------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHH
T ss_pred EECCcCeECCCCC-------ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHh
Confidence 9999997653321 1234568999999999876 58999999999999999999999996532211 1111111
Q ss_pred hhcccc--hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 687 SNFPKN--AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 687 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..++.. ....+++ . +.+++.+||+.||++|||+.|++++
T Consensus 237 ~~~~~~~~~~~~~s~------------------~----~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 237 GKYAFDLPQWRTISD------------------D----AKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp TCCCSCSGGGGGSCH------------------H----HHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred CCCCCCCcccCCCCH------------------H----HHHHHHHHcCCChhhCcCHHHHhcC
Confidence 111111 1111111 1 2236778999999999999999985
No 221
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=7.4e-39 Score=337.46 Aligned_cols=249 Identities=23% Similarity=0.336 Sum_probs=198.0
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccC---CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIES---TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|.+.+.||+|+||.||+|.+.+ ++.||+|++.... ....+.+.+|+.+++.++||||+++++++. +.+
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~ 114 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DND 114 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cCC
Confidence 4689999999999999999999764 8899999986542 234567889999999999999999999964 455
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 115 ~~~lv~e~~~~~~L~~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Df 185 (335)
T 2owb_A 115 FVFVVLELCRRRSLLELHKRRK------ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDF 185 (335)
T ss_dssp EEEEEECCCTTCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCC
T ss_pred eEEEEEecCCCCCHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeec
Confidence 7799999999999999987643 389999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhc
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNF 689 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 689 (767)
|.++...... .......||..|+|||++.+..++.++||||||+++|+|++|+.||........ ........+
T Consensus 186 g~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~ 258 (335)
T 2owb_A 186 GLATKVEYDG------ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET-YLRIKKNEY 258 (335)
T ss_dssp TTCEECCSTT------CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHHTCC
T ss_pred cCceecccCc------ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHhcCCC
Confidence 9997653221 112345689999999999998899999999999999999999999965321110 000101000
Q ss_pred ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 690 PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.....+++ .+.+++.+||+.||++|||++|++++
T Consensus 259 --~~~~~~~~----------------------~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 259 --SIPKHINP----------------------VAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp --CCCTTSCH----------------------HHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred --CCCccCCH----------------------HHHHHHHHHccCChhHCcCHHHHhcC
Confidence 01111111 12236778999999999999999875
No 222
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.8e-39 Score=341.29 Aligned_cols=253 Identities=24% Similarity=0.318 Sum_probs=194.7
Q ss_pred hcCCCCCCccccccceEEEEEEe----CCCcEEEEEEeeccC----CcchhhHHHHHHHHhcC-CCCCceeEEeeeecCC
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL----REGISVAVKVLDIES----TGTWKSFFAECEALRNT-RHRNLVKLITSCSSLD 524 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~ 524 (767)
.++|++.+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++.+ +||||+++++++.
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~--- 129 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ--- 129 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEE---
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEe---
Confidence 36899999999999999999997 358999999985432 23446677899999999 6999999999854
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCce
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTA 604 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 604 (767)
.....++||||+++|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 130 --~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~ 198 (355)
T 1vzo_A 130 --TETKLHLILDYINGGELFTHLSQRE------RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHV 198 (355)
T ss_dssp --ETTEEEEEECCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred --eCceEEEEeecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcE
Confidence 4456799999999999999997643 389999999999999999999999 99999999999999999999
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCC--CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc--c
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG--EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV--S 680 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~--~ 680 (767)
||+|||+++....... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........ .
T Consensus 199 kl~DfG~a~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~ 273 (355)
T 1vzo_A 199 VLTDFGLSKEFVADET-----ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAE 273 (355)
T ss_dssp EESCSSEEEECCGGGG-----GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHH
T ss_pred EEeeCCCCeecccCCC-----CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHH
Confidence 9999999976533211 11234569999999999885 3478999999999999999999999965332211 1
Q ss_pred hhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCC-----CHHHHHHHH
Q 004218 681 LVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRI-----DIREALRRL 748 (767)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~L 748 (767)
+........+. ....+. ..+.+++.+||+.||++|| |++|++++.
T Consensus 274 ~~~~~~~~~~~-~~~~~~----------------------~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~ 323 (355)
T 1vzo_A 274 ISRRILKSEPP-YPQEMS----------------------ALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL 323 (355)
T ss_dssp HHHHHHHCCCC-CCTTSC----------------------HHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred HHHHHhccCCC-CCcccC----------------------HHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence 11111111010 111111 1122377789999999999 999998865
No 223
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=8.2e-39 Score=330.35 Aligned_cols=248 Identities=21% Similarity=0.307 Sum_probs=192.6
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc--CCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCcccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE--STGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~ 528 (767)
..++|++.+.||+|+||.||+|.+. +++.||+|++... .......+.+|+..+..+ +||||+++++++. ..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~-----~~ 83 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWA-----ED 83 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEE-----ET
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeee-----cC
Confidence 4578999999999999999999976 6999999998754 233456788999999999 9999999999964 44
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC-------
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED------- 601 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~------- 601 (767)
+..++||||+++|+|.+++...... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 84 ~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~ 158 (289)
T 1x8b_A 84 DHMLIQNEYCNGGSLADAISENYRI--MSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAAS 158 (289)
T ss_dssp TEEEEEEECCTTCBHHHHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC---------
T ss_pred CeEEEEEEecCCCcHHHHHHhhccc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccc
Confidence 5779999999999999999764321 23489999999999999999999999 99999999999999844
Q ss_pred ------------CceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCC-CCCCcccchhhhHHHHHHHhCC
Q 004218 602 ------------MTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVMLLEIFTGM 668 (767)
Q Consensus 602 ------------~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~ 668 (767)
..+||+|||.+...... ....||+.|+|||++.+. .+++++||||+|+++|+|++|.
T Consensus 159 ~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~ 228 (289)
T 1x8b_A 159 EEGDEDDWASNKVMFKIGDLGHVTRISSP----------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAE 228 (289)
T ss_dssp -----------CCCEEECCCTTCEETTCS----------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccccccCCceEEEEcccccccccCCc----------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCC
Confidence 47999999999765322 223489999999998766 5668999999999999999998
Q ss_pred CCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 669 SPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 669 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
+|+... ...........+ ..+..+++. +.+++.+||+.||++|||+.|++++
T Consensus 229 ~~~~~~----~~~~~~~~~~~~-~~~~~~~~~----------------------~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 229 PLPRNG----DQWHEIRQGRLP-RIPQVLSQE----------------------FTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp CCCSSS----HHHHHHHTTCCC-CCSSCCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred CCCcch----hHHHHHHcCCCC-CCCcccCHH----------------------HHHHHHHHhCCCcccCCCHHHHhhC
Confidence 876332 111111111111 111112221 2226678999999999999999874
No 224
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=7.3e-39 Score=355.29 Aligned_cols=248 Identities=27% Similarity=0.389 Sum_probs=197.6
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC---CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES---TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++. ...
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~ 99 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFE-----DKG 99 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence 467999999999999999999976 58999999986542 345677899999999999999999999954 456
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee---CCCCceEE
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL---DEDMTAKV 606 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl 606 (767)
..++||||+++|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||++ +.++.+||
T Consensus 100 ~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl 170 (484)
T 3nyv_A 100 YFYLVGEVYTGGELFDEIISRK------RFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRI 170 (484)
T ss_dssp EEEEEECCCCSCBHHHHHHTCS------CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEE
T ss_pred EEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEE
Confidence 7899999999999999987644 399999999999999999999999 99999999999999 46789999
Q ss_pred ccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh-
Q 004218 607 GDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV- 685 (767)
Q Consensus 607 ~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~- 685 (767)
+|||+++...... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||...... .....+
T Consensus 171 ~Dfg~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~ 240 (484)
T 3nyv_A 171 IDFGLSTHFEASK-------KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEY--DILKKVE 240 (484)
T ss_dssp CCTTHHHHBCCCC-------SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHH
T ss_pred EeeeeeEEccccc-------ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHH
Confidence 9999998653321 1234568999999999876 6899999999999999999999999653221 111111
Q ss_pred hhhccc--chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 686 ESNFPK--NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 686 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
...+.. .....+++ .+.+++.+||+.||++|||+.|++++
T Consensus 241 ~~~~~~~~~~~~~~s~----------------------~~~~li~~~L~~dp~~R~s~~e~l~h 282 (484)
T 3nyv_A 241 KGKYTFELPQWKKVSE----------------------SAKDLIRKMLTYVPSMRISARDALDH 282 (484)
T ss_dssp HCCCCCCSGGGGGSCH----------------------HHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred cCCCCCCCcccccCCH----------------------HHHHHHHHHCCCChhHCcCHHHHhhC
Confidence 111111 11111111 12236778999999999999999975
No 225
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-39 Score=339.55 Aligned_cols=265 Identities=26% Similarity=0.387 Sum_probs=196.3
Q ss_pred CHHHHHHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcC-CCCCceeEEeeeecC
Q 004218 446 SYDELRRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNT-RHRNLVKLITSCSSL 523 (767)
Q Consensus 446 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~ 523 (767)
++.++....++|++.+.||+|+||.||+|.+. +++.||||++.... ...+.+.+|+.+++++ +||||+++++++...
T Consensus 15 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~ 93 (326)
T 2x7f_A 15 DLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKK 93 (326)
T ss_dssp -CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEEC
T ss_pred cchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeec
Confidence 33444556789999999999999999999975 58999999986443 3457788999999998 899999999997643
Q ss_pred Cc-ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC
Q 004218 524 DF-KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM 602 (767)
Q Consensus 524 ~~-~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~ 602 (767)
.. ......++||||+++|+|.+++.... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~ 166 (326)
T 2x7f_A 94 NPPGMDDQLWLVMEFCGAGSVTDLIKNTK----GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENA 166 (326)
T ss_dssp C--CCCCEEEEEEECCTTEEHHHHHHHSG----GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTC
T ss_pred cCccccceEEEEEEcCCCCcHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCC
Confidence 21 12467899999999999999997643 23489999999999999999999999 999999999999999999
Q ss_pred ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccC-----CCCCCCcccchhhhHHHHHHHhCCCCCCCcccC
Q 004218 603 TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL-----GEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAG 677 (767)
Q Consensus 603 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~ 677 (767)
.+||+|||++........ ......||+.|+|||++. +..++.++||||||+++|+|++|+.||......
T Consensus 167 ~~kl~Dfg~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~ 240 (326)
T 2x7f_A 167 EVKLVDFGVSAQLDRTVG------RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM 240 (326)
T ss_dssp CEEECCCTTTC-------------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred CEEEeeCcCceecCcCcc------ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH
Confidence 999999999976543211 123346899999999987 566899999999999999999999998653211
Q ss_pred CcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 678 EVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
. ..........+......+++ .+.+++.+||+.||++|||++|++++
T Consensus 241 ~-~~~~~~~~~~~~~~~~~~~~----------------------~l~~li~~~l~~dp~~Rps~~~ll~h 287 (326)
T 2x7f_A 241 R-ALFLIPRNPAPRLKSKKWSK----------------------KFQSFIESCLVKNHSQRPATEQLMKH 287 (326)
T ss_dssp H-HHHHHHHSCCCCCSCSCSCH----------------------HHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred H-HHHHhhcCccccCCccccCH----------------------HHHHHHHHHhccChhhCCCHHHHhhC
Confidence 1 01111111111111111111 12236678999999999999999874
No 226
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=1.8e-38 Score=325.30 Aligned_cols=248 Identities=29% Similarity=0.416 Sum_probs=189.6
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++... .....+.+.+|+++++.++||||+++++++. ...
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 84 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIS-----TPT 84 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEe-----cCC
Confidence 468999999999999999999976 6999999998643 2334567889999999999999999999954 445
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++++|.+++.... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~df 155 (276)
T 2h6d_A 85 DFFMVMEYVSGGELFDYICKHG------RVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADF 155 (276)
T ss_dssp EEEEEEECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCC
T ss_pred eEEEEEeccCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeec
Confidence 6799999999999999997643 289999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
|.+....... ......||+.|+|||.+.+..+ +.++||||+|+++|+|++|+.||...... .....+...
T Consensus 156 g~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~ 226 (276)
T 2h6d_A 156 GLSNMMSDGE-------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP--TLFKKIRGG 226 (276)
T ss_dssp CGGGCCCC--------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHC
T ss_pred ccccccCCCc-------ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--HHHHHhhcC
Confidence 9997653321 1123458999999999987765 68999999999999999999999653211 111111111
Q ss_pred cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.. ..+..++. .+.+++.+||+.||++|||++|++++
T Consensus 227 ~~-~~~~~~~~----------------------~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 227 VF-YIPEYLNR----------------------SVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp CC-CCCTTSCH----------------------HHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred cc-cCchhcCH----------------------HHHHHHHHHccCChhhCCCHHHHHhC
Confidence 00 00111111 12236778999999999999999985
No 227
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.9e-38 Score=332.75 Aligned_cols=252 Identities=25% Similarity=0.313 Sum_probs=190.4
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--------CcchhhHHHHHHHHhcCCCCCceeEEeeeecC
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--------TGTWKSFFAECEALRNTRHRNLVKLITSCSSL 523 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 523 (767)
..++|++.+.||+|+||.||+|.+. +++.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~- 86 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA- 86 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES-
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC-
Confidence 3468999999999999999999976 48899999985432 1223468899999999999999999998643
Q ss_pred CcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc
Q 004218 524 DFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT 603 (767)
Q Consensus 524 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~ 603 (767)
...++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 87 -----~~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~ 152 (322)
T 2ycf_A 87 -----EDYYIVLELMEGGELFDKVVGNK------RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEE 152 (322)
T ss_dssp -----SSEEEEEECCTTEETHHHHSTTC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSS
T ss_pred -----CceEEEEecCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCC
Confidence 22699999999999999987543 389999999999999999999999 9999999999999987654
Q ss_pred ---eEEccccchhhhhhhcCCCccccccccccCCCCccCcccc---CCCCCCCcccchhhhHHHHHHHhCCCCCCCcccC
Q 004218 604 ---AKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYG---LGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAG 677 (767)
Q Consensus 604 ---~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~ 677 (767)
+||+|||.++..... .......||+.|+|||++ ....++.++||||+||++|+|++|+.||......
T Consensus 153 ~~~~kl~Dfg~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 225 (322)
T 2ycf_A 153 DCLIKITDFGHSKILGET-------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ 225 (322)
T ss_dssp SCCEEECCCTTCEECCCC-------HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCS
T ss_pred CCeEEEccCccceecccc-------cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchH
Confidence 999999999764321 112345689999999986 3567899999999999999999999999754332
Q ss_pred CcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 004218 678 EVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALR 746 (767)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~ 746 (767)
.. ....+.......... . ...+...+.+++.+||+.||++|||+.|+++
T Consensus 226 ~~-~~~~~~~~~~~~~~~-----~--------------~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 226 VS-LKDQITSGKYNFIPE-----V--------------WAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp SC-HHHHHHHTCCCCCHH-----H--------------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HH-HHHHHHhCccccCch-----h--------------hhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 21 211111111000000 0 0001111223777899999999999999985
No 228
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=9.1e-39 Score=343.25 Aligned_cols=207 Identities=23% Similarity=0.337 Sum_probs=166.7
Q ss_pred HHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc----
Q 004218 451 RRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF---- 525 (767)
Q Consensus 451 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~---- 525 (767)
....++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+|+++++.++||||+++++++.....
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 345678999999999999999999974 58999999986432 223479999999999999999999754321
Q ss_pred -----------------------------ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004218 526 -----------------------------KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALD 576 (767)
Q Consensus 526 -----------------------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~ 576 (767)
....+.++||||+++ +|.+.+...... ...+++..+..++.|+++||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~--~~~l~~~~~~~i~~qi~~aL~ 155 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRS--GRSIPMNLISIYIYQLFRAVG 155 (383)
T ss_dssp -------------------------------CCEEEEEECCCSE-EHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHH
Confidence 344568999999984 888877642211 244999999999999999999
Q ss_pred HHHhCCCCCeEeecCCCCCeeeC-CCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCC-CCCCcccc
Q 004218 577 YLHNDCEVPIVHCDLKPGNILLD-EDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDV 654 (767)
Q Consensus 577 ~LH~~~~~~ivH~Dlkp~NIl~~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv 654 (767)
|||+. ||+||||||+||+++ .++.+||+|||.++...... ......||..|+|||++.+. .++.++||
T Consensus 156 ~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di 225 (383)
T 3eb0_A 156 FIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE-------PSVAYICSRFYRAPELMLGATEYTPSIDL 225 (383)
T ss_dssp HHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS-------CCCCCCCCSSCCCHHHHTTCSSCCTHHHH
T ss_pred HHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC-------CCcCcccCCCccCHHHhcCCCCCCcchhh
Confidence 99999 999999999999997 68899999999998653321 11334689999999988765 48999999
Q ss_pred hhhhHHHHHHHhCCCCCCCc
Q 004218 655 YSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 655 ~slG~il~el~tg~~p~~~~ 674 (767)
||+||++|||++|+.||...
T Consensus 226 wslG~il~ell~g~~pf~~~ 245 (383)
T 3eb0_A 226 WSIGCVFGELILGKPLFSGE 245 (383)
T ss_dssp HHHHHHHHHHHHSSCSSCCS
T ss_pred hhHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999764
No 229
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=4.1e-39 Score=342.73 Aligned_cols=282 Identities=23% Similarity=0.272 Sum_probs=200.3
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ......+.+|++++++++||||+++++++....+......
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999976 58999999986432 2334678899999999999999999999876555566788
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||++ |+|.+++.... +++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.
T Consensus 90 ~lv~e~~~-~~L~~~~~~~~-------~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~ 158 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQM-------LSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGL 158 (353)
T ss_dssp EEEECCCS-EEHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEeccC-ccHHHHHhhcC-------CCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccc
Confidence 99999997 59999987532 89999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCcc----ccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh
Q 004218 612 ARSLLERIGNQSS----ISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 612 a~~~~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~ 686 (767)
++........... ........||+.|+|||++.+ ..++.++||||+||++|+|++|+.||........ ......
T Consensus 159 a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~ 237 (353)
T 2b9h_A 159 ARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQ-LLLIFG 237 (353)
T ss_dssp CEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHH
T ss_pred ccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHH-HHHHHH
Confidence 9865433211110 011233568999999998654 6789999999999999999999999965432111 000000
Q ss_pred h-hccc---chhhhccHHHHHhhhcc----hhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 687 S-NFPK---NAQQVLDRELRQLMMSS----ESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 687 ~-~~~~---~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
. ..+. ................. ..........+...+.+++.+||+.||++|||++|++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (353)
T 2b9h_A 238 IIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH 306 (353)
T ss_dssp HHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 0 0000 00111111111111000 000000001112223347779999999999999999874
No 230
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=3.6e-38 Score=345.13 Aligned_cols=267 Identities=22% Similarity=0.274 Sum_probs=200.5
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 532 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+|+++++.++|++.+..+.++. ......+
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~il~~L~~~~~i~~i~~~~----~~~~~~~ 79 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT--KHPQLLYESKIYRILQGGTGIPNVRWFG----VEGDYNV 79 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTC--SSCCHHHHHHHHHHTTTSTTCCCEEEEE----EETTEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccc--ccHHHHHHHHHHHHhcCCCCCCeEEEEE----eeCCEEE
Confidence 468999999999999999999974 58999999886433 3356889999999998755544444432 3455679
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee---CCCCceEEccc
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL---DEDMTAKVGDF 609 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~---~~~~~~kl~Df 609 (767)
+||||+ +++|.+++.... ..+++.+++.|+.||+.||+|||++ +|+||||||+|||+ +.++.+||+||
T Consensus 80 lvme~~-g~sL~~ll~~~~-----~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DF 150 (483)
T 3sv0_A 80 LVMDLL-GPSLEDLFNFCS-----RKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDF 150 (483)
T ss_dssp EEEECC-CCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCC
T ss_pred EEEECC-CCCHHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeC
Confidence 999999 889999997543 2399999999999999999999999 99999999999999 58899999999
Q ss_pred cchhhhhhhcCCCc-cccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcc--hhhHhh
Q 004218 610 GLARSLLERIGNQS-SISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVS--LVKWVE 686 (767)
Q Consensus 610 g~a~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~--~~~~~~ 686 (767)
|+++.+........ .........||..|+|||++.+..++.++|||||||++|||++|+.||......... +.....
T Consensus 151 Gla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~ 230 (483)
T 3sv0_A 151 GLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISE 230 (483)
T ss_dssp TTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHH
T ss_pred CcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhh
Confidence 99987654322111 111223567999999999999999999999999999999999999999764332210 011100
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
....... ..+...+...+.+++..||+.||++||+++++++.|+.+...
T Consensus 231 ~~~~~~~-------------------~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~ 279 (483)
T 3sv0_A 231 KKVATSI-------------------EALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR 279 (483)
T ss_dssp HHHHSCH-------------------HHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred ccccccH-------------------HHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence 0000000 000001111223377799999999999999999999988653
No 231
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=7.2e-39 Score=337.23 Aligned_cols=201 Identities=29% Similarity=0.425 Sum_probs=167.5
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCc--chhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTG--TWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~--~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|.+.. ++.||+|++...... ..+.+.+|++++++++||||+++++++. ....
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~ 98 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCK-----KKKR 98 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEee-----cCCE
Confidence 4689999999999999999999764 899999998644332 2456789999999999999999999964 4566
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||+++++|.++..... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 99 ~~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg 169 (331)
T 4aaa_A 99 WYLVFEFVDHTILDDLELFPN------GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFG 169 (331)
T ss_dssp EEEEEECCSEEHHHHHHHSTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCT
T ss_pred EEEEEecCCcchHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCC
Confidence 799999999999998876433 399999999999999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCC-CCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
.++....... ......||..|+|||++.+. .++.++||||+||++|+|++|+.||...
T Consensus 170 ~~~~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 228 (331)
T 4aaa_A 170 FARTLAAPGE------VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGD 228 (331)
T ss_dssp TC------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred CceeecCCcc------ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 9976543211 12334589999999998775 6899999999999999999999999664
No 232
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=7.1e-39 Score=340.19 Aligned_cols=265 Identities=18% Similarity=0.308 Sum_probs=197.1
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcc-----------------hhhHHHHHHHHhcCCCCCceeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGT-----------------WKSFFAECEALRNTRHRNLVKL 516 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~e~~~l~~l~h~niv~~ 516 (767)
.++|++.+.||+|+||.||+|.+ +++.||||++....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999999 79999999986432111 1788999999999999999999
Q ss_pred EeeeecCCcccceeeEEEEeecCCCChhhh------hcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEee
Q 004218 517 ITSCSSLDFKNMEFLALVYEFLGNGSLGDW------IHGERKNEHGNGLNFLERLNIAIDIASALDYLHN-DCEVPIVHC 589 (767)
Q Consensus 517 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~ 589 (767)
++++. ..+..++||||+++|+|.++ +.... ...+++..++.++.|++.||+|||+ . +|+||
T Consensus 109 ~~~~~-----~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~ 176 (348)
T 2pml_X 109 EGIIT-----NYDEVYIIYEYMENDSILKFDEYFFVLDKNY----TCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHR 176 (348)
T ss_dssp SEEEE-----SSSEEEEEEECCTTCBSSEESSSEESSCSSS----CCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECC
T ss_pred EEEEe-----eCCeEEEEEeccCCCcHHHHHHHhhhhhhcc----ccCCCHHHHHHHHHHHHHHHHHHhccC---CEeec
Confidence 99964 34577999999999999999 44321 3459999999999999999999998 8 99999
Q ss_pred cCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCC-CCCC-cccchhhhHHHHHHHhC
Q 004218 590 DLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPST-AGDVYSFGVMLLEIFTG 667 (767)
Q Consensus 590 Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~slG~il~el~tg 667 (767)
||||+||+++.++.+||+|||.+...... ......||..|+|||++.+. .++. ++||||+|+++|+|++|
T Consensus 177 dl~p~Nil~~~~~~~kl~dfg~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g 248 (348)
T 2pml_X 177 DVKPSNILMDKNGRVKLSDFGESEYMVDK--------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYN 248 (348)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCEECBTT--------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHS
T ss_pred CCChHhEEEcCCCcEEEeccccccccccc--------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhC
Confidence 99999999999999999999999765332 12345689999999999877 5665 99999999999999999
Q ss_pred CCCCCCcccCCcchhhHhhhh---cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHH
Q 004218 668 MSPTHESFAGEVSLVKWVESN---FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREA 744 (767)
Q Consensus 668 ~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~ev 744 (767)
+.||....... .....+... ++......... ... .........+...+.+++.+||+.||++|||+.|+
T Consensus 249 ~~pf~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~ 320 (348)
T 2pml_X 249 VVPFSLKISLV-ELFNNIRTKNIEYPLDRNHFLYP----LTN---KKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDA 320 (348)
T ss_dssp SCSSCCSSCSH-HHHHHHTSCCCCCCCSSSSSTTT----TCC-----------CCCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred CCCCCCCCcHH-HHHHHHhccCcCCccchhhhhcc----ccc---cccccchhhcCHHHHHHHHHHccCChhhCCCHHHH
Confidence 99997643321 111111111 11100000000 000 00000001111122337779999999999999999
Q ss_pred HHH
Q 004218 745 LRR 747 (767)
Q Consensus 745 l~~ 747 (767)
+++
T Consensus 321 l~h 323 (348)
T 2pml_X 321 LKH 323 (348)
T ss_dssp HTS
T ss_pred hcC
Confidence 874
No 233
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=2.3e-38 Score=352.56 Aligned_cols=251 Identities=26% Similarity=0.343 Sum_probs=193.7
Q ss_pred HhcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCC-------------cchhhHHHHHHHHhcCCCCCceeEEe
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIEST-------------GTWKSFFAECEALRNTRHRNLVKLIT 518 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~-------------~~~~~~~~e~~~l~~l~h~niv~~~~ 518 (767)
..++|++.+.||+|+||.||+|.+.. ++.||+|++..... ...+.+.+|++++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 35789999999999999999999764 88999999864321 23467889999999999999999999
Q ss_pred eeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee
Q 004218 519 SCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL 598 (767)
Q Consensus 519 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~ 598 (767)
++. +...+++||||+++|+|.+++..... +++..+..++.|++.||+|||+. +|+||||||+||++
T Consensus 114 ~~~-----~~~~~~lv~e~~~gg~L~~~l~~~~~------~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~ 179 (504)
T 3q5i_A 114 VFE-----DKKYFYLVTEFYEGGELFEQIINRHK------FDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILL 179 (504)
T ss_dssp EEE-----CSSEEEEEEECCTTCBHHHHHHHHSC------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred EEE-----cCCEEEEEEecCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEE
Confidence 964 55678999999999999999876442 99999999999999999999999 99999999999999
Q ss_pred CCCC---ceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcc
Q 004218 599 DEDM---TAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESF 675 (767)
Q Consensus 599 ~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~ 675 (767)
+.++ .+||+|||+++...... ......||+.|+|||++. ..++.++||||+||++|+|++|+.||....
T Consensus 180 ~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 251 (504)
T 3q5i_A 180 ENKNSLLNIKIVDFGLSSFFSKDY-------KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQN 251 (504)
T ss_dssp SSTTCCSSEEECCCTTCEECCTTS-------CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred ecCCCCccEEEEECCCCEEcCCCC-------ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 8775 69999999997654321 123456999999999987 468999999999999999999999996532
Q ss_pred cCCcchhhHhh-hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 676 AGEVSLVKWVE-SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 676 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.. .....+. ..+..... . ...+...+.+++.+||+.||++|||++|++++
T Consensus 252 ~~--~~~~~i~~~~~~~~~~----------------~----~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 252 DQ--DIIKKVEKGKYYFDFN----------------D----WKNISDEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp HH--HHHHHHHHCCCCCCHH----------------H----HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HH--HHHHHHHcCCCCCCcc----------------c----cCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 21 1111111 11110000 0 00011122337778999999999999999875
No 234
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.8e-38 Score=354.50 Aligned_cols=345 Identities=18% Similarity=0.250 Sum_probs=287.3
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEe
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYN 81 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 81 (767)
++|++|+|++|+++ .+|...+..+++|++|+|++|++.+..|+.|.++++|++|+|++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 57999999999998 788767778999999999999999888999999999999999999999 67766 899999999
Q ss_pred ecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhcccc--CeEEccCCcc--cccCCccccCCC---
Q 004218 82 IGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVL--SKLYMGGNRF--YGKIPTSIGRLR--- 154 (767)
Q Consensus 82 l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L--~~L~l~~n~i--~~~~~~~l~~l~--- 154 (767)
+++|++... ..+..+.++++|++|++++|++++. .+..+.. | ++|++++|++ ++..|..+..+.
T Consensus 128 Ls~N~l~~l-----~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~-L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 128 LSFNDFDVL-----PVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAH-LHLSCILLDLVSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp CCSSCCSBC-----CCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTT-SCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred CCCCCcccc-----CchHhhcccCcccEEecCCCccccC---chhhhhh-ceeeEEEeecccccccccCcccccccCcce
Confidence 999999754 3456789999999999999999853 4445544 5 9999999988 666666655543
Q ss_pred ------------------------------------------------------------------------------CC
Q 004218 155 ------------------------------------------------------------------------------SL 156 (767)
Q Consensus 155 ------------------------------------------------------------------------------~L 156 (767)
+|
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 67
Q ss_pred CEEECcCCcCcccCcccc-----CCC--------------------------CCCCEEEccCCccccccCcCcccCCCCc
Q 004218 157 TLLNLSYNSISGEILTEI-----GQL--------------------------QELQSLDLAGNQISGSIPNTLGNLKKLN 205 (767)
Q Consensus 157 ~~L~l~~n~i~~~~~~~~-----~~l--------------------------~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 205 (767)
++|++++|.+++.+|..+ ..+ .+|++|++++|.+.... ....+++|+
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~ 356 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFT 356 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCce
Confidence 788888888887677655 333 34777777777765221 126889999
Q ss_pred eeeCCCCcCCCCCcccccCccccccccccCcccCCC--CChhhcccccccceeecccccCCCCCc-hhhcCCCceeEEEc
Q 004218 206 QIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGN--IPKEILSLSSLTTIVNLSKNFLDGTLP-EEIGMLGNVVTIDL 282 (767)
Q Consensus 206 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~l~~~l~l~~n~l~~~~~-~~~~~l~~L~~L~l 282 (767)
+|++++|++++..|..+..+++|+.|++++|++++. +|..+..+++|. .+++++|.+++.+| ..+..+++|+.|++
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE-TLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC-EEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC-EEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 999999999988999999999999999999999953 346788999994 45999999998444 56889999999999
Q ss_pred cCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCcc-ccccccCceEeccCCcCcC
Q 004218 283 SANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSD-LQNLRALRSLNLTFNNLEG 361 (767)
Q Consensus 283 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~ 361 (767)
++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|+|++|++++ +|.. +..+++|+.|++++|++++
T Consensus 436 ~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCC
Confidence 99999877766554 79999999999999 677767799999999999999994 5555 8999999999999999998
Q ss_pred cCCCC
Q 004218 362 VVPRE 366 (767)
Q Consensus 362 ~~~~~ 366 (767)
..+..
T Consensus 512 ~c~~~ 516 (562)
T 3a79_B 512 TCPGI 516 (562)
T ss_dssp CHHHH
T ss_pred CcchH
Confidence 76543
No 235
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=2.9e-39 Score=334.06 Aligned_cols=261 Identities=26% Similarity=0.341 Sum_probs=190.9
Q ss_pred hcCCCCCCccccccceEEEEEEeC--CCc--EEEEEEeecc---CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR--EGI--SVAVKVLDIE---STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~--~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 526 (767)
.++|++.+.||+|+||.||+|.+. +++ .||+|++... .....+.+.+|++++++++||||+++++++...
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--- 93 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP--- 93 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS---
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC---
Confidence 467999999999999999999853 233 6899988644 233457789999999999999999999996532
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEE
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKV 606 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl 606 (767)
..++||||+++++|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 94 ---~~~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl 162 (291)
T 1u46_A 94 ---PMKMVTELAPLGSLLDRLRKHQ-----GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKI 162 (291)
T ss_dssp ---SCEEEEECCTTCBHHHHHHHHG-----GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEE
T ss_pred ---CceeeEecccCCCHHHHHHhcc-----CCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEE
Confidence 2689999999999999997643 2389999999999999999999999 9999999999999999999999
Q ss_pred ccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHh
Q 004218 607 GDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWV 685 (767)
Q Consensus 607 ~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~ 685 (767)
+|||.+........ .........+|..|+|||++.+..++.++||||+|+++|+|++ |+.||...... .....+
T Consensus 163 ~Dfg~~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~ 237 (291)
T 1u46_A 163 GDFGLMRALPQNDD---HYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS--QILHKI 237 (291)
T ss_dssp CCCTTCEECCC-CC---EEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHH
T ss_pred cccccccccccccc---chhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH--HHHHHH
Confidence 99999976543211 1111233457888999999988888999999999999999999 99999653221 111111
Q ss_pred h-hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 004218 686 E-SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKIL 755 (767)
Q Consensus 686 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 755 (767)
. ..........+++. +.+++.+||+.||++|||+.|+++.|+++....
T Consensus 238 ~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 286 (291)
T 1u46_A 238 DKEGERLPRPEDCPQD----------------------IYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTD 286 (291)
T ss_dssp HTSCCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred HccCCCCCCCcCcCHH----------------------HHHHHHHHccCCcccCcCHHHHHHHHHHhCccc
Confidence 1 11111111111111 222677899999999999999999999876543
No 236
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=1.9e-38 Score=329.27 Aligned_cols=201 Identities=29% Similarity=0.446 Sum_probs=169.1
Q ss_pred cCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC--CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccceee
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES--TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|++++++++||||+++++++. ..+..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 77 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIH-----TENKL 77 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEe-----cCCce
Confidence 57899999999999999999976 58999999986442 233567889999999999999999999964 44567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGL 611 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 611 (767)
++||||++ ++|.+++.... ...+++..+..++.|++.||+|||++ ||+||||||+||+++.++.+||+|||.
T Consensus 78 ~lv~e~~~-~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~ 149 (299)
T 2r3i_A 78 YLVFEFLH-QDLKKFMDASA----LTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149 (299)
T ss_dssp EEEEECCS-EEHHHHHHHTT----TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTH
T ss_pred EEEEEccc-CCHHHHHHhhh----ccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchh
Confidence 99999997 59999997653 23489999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCCC-CCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEK-PSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+........ ......||+.|+|||++.+.. ++.++||||+|+++|+|++|+.||...
T Consensus 150 ~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 207 (299)
T 2r3i_A 150 ARAFGVPVR------TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGD 207 (299)
T ss_dssp HHHHCCCSB------CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred hhhccCCcc------ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 987643211 112345799999999988765 799999999999999999999999664
No 237
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=6.6e-39 Score=331.21 Aligned_cols=255 Identities=20% Similarity=0.253 Sum_probs=182.1
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCc-c-hhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTG-T-WKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-~-~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|.+. +++.||+|++...... . .+.+.++...++.++||||+++++++. ..+.
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~-----~~~~ 80 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----REGD 80 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSS
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeee-----ccCC
Confidence 468999999999999999999974 5899999998654222 2 233444555678889999999999964 4456
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||+++ +|.+++...... ...+++..++.++.|++.||+|||++ .+|+||||||+||+++.++.+||+|||
T Consensus 81 ~~lv~e~~~~-~l~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg 155 (290)
T 3fme_A 81 VWICMELMDT-SLDKFYKQVIDK--GQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFG 155 (290)
T ss_dssp EEEEEECCSE-EHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC-
T ss_pred EEEEEehhcc-chHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecC
Confidence 7999999975 888887643211 23499999999999999999999984 289999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCcccc----CCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYG----LGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~ 686 (767)
.++....... .....||+.|+|||++ .+..++.++||||+|+++|+|++|+.||...............
T Consensus 156 ~~~~~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~ 228 (290)
T 3fme_A 156 ISGYLVDDVA-------KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVE 228 (290)
T ss_dssp ---------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHH
T ss_pred Cccccccccc-------ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhc
Confidence 9986543311 1234589999999995 5667899999999999999999999999653322222222222
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
...+......+++. +.+++.+||+.||++|||++|++++
T Consensus 229 ~~~~~~~~~~~~~~----------------------~~~li~~~l~~~p~~Rpt~~e~l~h 267 (290)
T 3fme_A 229 EPSPQLPADKFSAE----------------------FVDFTSQCLKKNSKERPTYPELMQH 267 (290)
T ss_dssp SCCCCCCTTTSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred cCCCCcccccCCHH----------------------HHHHHHHHhhcChhhCcCHHHHHhC
Confidence 22222111112221 2226678999999999999999884
No 238
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=2e-38 Score=362.45 Aligned_cols=251 Identities=24% Similarity=0.336 Sum_probs=197.9
Q ss_pred HHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCcc
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~ 526 (767)
...++|++.+.||+|+||.||+|++. +++.||||++... .....+.+..|.+++..+ +||+|++++++ +.
T Consensus 338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~-----~~ 412 (674)
T 3pfq_A 338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSC-----FQ 412 (674)
T ss_dssp --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEE-----CB
T ss_pred ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEE-----EE
Confidence 34578999999999999999999976 4889999999643 334556788999999988 79999999998 45
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEE
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKV 606 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl 606 (767)
+.+.+|+||||+++|+|.+++..... +++..+..++.||+.||+|||++ +|+||||||+|||++.++.+||
T Consensus 413 ~~~~~~lV~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL 483 (674)
T 3pfq_A 413 TMDRLYFVMEYVNGGDLMYHIQQVGR------FKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKI 483 (674)
T ss_dssp CSSEEEEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEE
T ss_pred eCCEEEEEEeCcCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEE
Confidence 56678999999999999999986543 99999999999999999999999 9999999999999999999999
Q ss_pred ccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh
Q 004218 607 GDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 607 ~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~ 686 (767)
+|||+++..... ........||+.|+|||++.+..++.++|||||||++|||++|+.||...... .+...+.
T Consensus 484 ~DFGla~~~~~~------~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~--~~~~~i~ 555 (674)
T 3pfq_A 484 ADFGMCKENIWD------GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED--ELFQSIM 555 (674)
T ss_dssp CCCTTCEECCCT------TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHH
T ss_pred eecceeeccccC------CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHH--HHHHHHH
Confidence 999999753221 11234567999999999999999999999999999999999999999653221 1111111
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCH-----HHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDI-----REALRR 747 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~-----~evl~~ 747 (767)
.... ..+..+++. +.+++.+||+.||++||++ +|++++
T Consensus 556 ~~~~-~~p~~~s~~----------------------~~~li~~lL~~dP~~R~~~~~~~~~ei~~h 598 (674)
T 3pfq_A 556 EHNV-AYPKSMSKE----------------------AVAICKGLMTKHPGKRLGCGPEGERDIKEH 598 (674)
T ss_dssp SSCC-CCCTTSCHH----------------------HHHHHHHHSCSSSTTCTTCSTTHHHHHHSS
T ss_pred hCCC-CCCccCCHH----------------------HHHHHHHHccCCHHHCCCCCCCcHHHHhcC
Confidence 1000 011111111 2236678999999999998 666653
No 239
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.3e-38 Score=355.20 Aligned_cols=346 Identities=21% Similarity=0.218 Sum_probs=238.7
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcc-cCCccCCCCCCCcE
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEG-TVPPGLGNLPFLKM 79 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~ 79 (767)
|++|++|+|++|+++ .++...+..+++|++|++++|.+.+..|..|+++++|++|+|++|.+++ ..|..++.+++|++
T Consensus 49 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 578999999999999 5665556679999999999999997777789999999999999999986 35678999999999
Q ss_pred EeecCccccCCCCCCccc-cccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCE
Q 004218 80 YNIGFNKIVGSGDEGLSF-ITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTL 158 (767)
Q Consensus 80 L~l~~n~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 158 (767)
|++++|++.+ .+ ...+.++++|++|++++|++++..|..+..+++ |++|+++.|.+.......+..+++|++
T Consensus 128 L~L~~n~~~~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 128 LRIGNVETFS------EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTLHLSESAFLLEIFADILSSVRY 200 (549)
T ss_dssp EEEEESSSCC------EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE-EEEEEEECSBSTTHHHHHHHSTTTBSE
T ss_pred EECCCCcccc------ccCHhhhhcccccCeeeccCCcccccChhhhhcccc-CceEecccCcccccchhhHhhcccccE
Confidence 9999998432 22 246788999999999999999888887766544 444444444333111111122333333
Q ss_pred EECcCCcCcc----------------------------------------------------------------------
Q 004218 159 LNLSYNSISG---------------------------------------------------------------------- 168 (767)
Q Consensus 159 L~l~~n~i~~---------------------------------------------------------------------- 168 (767)
|++++|.+++
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 280 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh
Confidence 3333333322
Q ss_pred -------------------------------------------cCcccc-CCCCCCCEEEccCCccccccC---cCcccC
Q 004218 169 -------------------------------------------EILTEI-GQLQELQSLDLAGNQISGSIP---NTLGNL 201 (767)
Q Consensus 169 -------------------------------------------~~~~~~-~~l~~L~~L~L~~n~i~~~~~---~~~~~l 201 (767)
.+|..+ ..+++|++|++++|++.+..| ..+..+
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 122222 245556666666666554332 224555
Q ss_pred CCCceeeCCCCcCCCCCc--ccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeE
Q 004218 202 KKLNQIDLSGNELASEIP--TSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVT 279 (767)
Q Consensus 202 ~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~ 279 (767)
++|++|+|++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++| +.+++++|.++.. |..+ .++|+.
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~~l-~~~~--~~~L~~ 435 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIRVV-KTCI--PQTLEV 435 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCSCC-CTTS--CTTCSE
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCcccc-cchh--cCCceE
Confidence 666666666666654321 33555666666666666665 455555555555 3336666666532 2222 245666
Q ss_pred EEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcC
Q 004218 280 IDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNL 359 (767)
Q Consensus 280 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 359 (767)
|++++|++++. +..+++|+.|++++|+++ .+|. ...+++|+.|+|++|++++..|..+..+++|+.|++++|++
T Consensus 436 L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 436 LDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred EECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 66666666643 257899999999999999 5665 56899999999999999998888899999999999999999
Q ss_pred cCcCCC
Q 004218 360 EGVVPR 365 (767)
Q Consensus 360 ~~~~~~ 365 (767)
++..|.
T Consensus 510 ~~~~~~ 515 (549)
T 2z81_A 510 DCSCPR 515 (549)
T ss_dssp CCCHHH
T ss_pred cCCCcc
Confidence 987764
No 240
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.5e-38 Score=336.30 Aligned_cols=256 Identities=20% Similarity=0.268 Sum_probs=192.4
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC-cchhhHHHHHHH-HhcCCCCCceeEEeeeecCCcccce
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST-GTWKSFFAECEA-LRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~-l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
..++|++.+.||+|+||.||+|.+. +|+.||||++..... ....++..|..+ ++.++||||+++++++. ..+
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~-----~~~ 123 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----REG 123 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEE-----CSS
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEE-----eCC
Confidence 3467888999999999999999974 589999999865432 234456666665 67789999999999964 345
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||+++ +|.+++...... ...+++..++.++.|++.||+|||++ .+|+||||||+||+++.++.+||+||
T Consensus 124 ~~~lv~e~~~~-~L~~~l~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~--~~ivH~Dlkp~NIl~~~~~~~kl~Df 198 (340)
T 3an0_A 124 DVWICMELMDT-SLDKFYKQVIDK--GQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDF 198 (340)
T ss_dssp CEEEEECCCSE-EHHHHHHHHHHT--SCCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCSCCSTTEEECSTTCEEECCC
T ss_pred cEEEEHHHhhC-cHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeeC
Confidence 67999999976 999988643211 23499999999999999999999973 18999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccC----CCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL----GEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV 685 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~ 685 (767)
|+++...... ......||+.|+|||++. ...++.++|||||||++|||++|+.||.........+....
T Consensus 199 g~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~ 271 (340)
T 3an0_A 199 GISGYLVDSV-------AKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVV 271 (340)
T ss_dssp SHHHHHSCHH-------HHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHH
T ss_pred CCceeccccc-------ccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHh
Confidence 9998764321 112346899999999964 34688999999999999999999999965322211222222
Q ss_pred hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 686 ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
....+......+++. +.+++.+||+.||++|||+.|++++
T Consensus 272 ~~~~~~~~~~~~~~~----------------------~~~li~~~l~~dp~~Rps~~ell~h 311 (340)
T 3an0_A 272 EEPSPQLPADKFSAE----------------------FVDFTSQCLKKNSKERPTYPELMQH 311 (340)
T ss_dssp HSCCCCCCGGGSCHH----------------------HHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred cCCCCCCCcccCCHH----------------------HHHHHHHHccCCcccCcCHHHHhcC
Confidence 211111111111111 2236778999999999999999874
No 241
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=7e-39 Score=337.01 Aligned_cols=208 Identities=28% Similarity=0.415 Sum_probs=174.9
Q ss_pred HHhcCCCCCCccccccceEEEEEEeC--CCcEEEEEEeeccC--CcchhhHHHHHHHHhcC---CCCCceeEEeeeecCC
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLR--EGISVAVKVLDIES--TGTWKSFFAECEALRNT---RHRNLVKLITSCSSLD 524 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l---~h~niv~~~~~~~~~~ 524 (767)
.+.++|++.+.||+|+||.||+|.+. +++.||+|++.... ......+.+|+.+++.+ +||||+++++++....
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 35688999999999999999999973 58899999986442 22345677888877766 8999999999976433
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCce
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTA 604 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 604 (767)
.......++||||++ |+|.+++.... ...+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~ 159 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKVP----EPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQI 159 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHSC----TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCE
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCE
Confidence 345678899999998 59999997654 23489999999999999999999999 99999999999999999999
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
||+|||.++...... ......||..|+|||++.+..++.++||||+|+++|+|++|+.||...
T Consensus 160 kl~Dfg~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 222 (326)
T 1blx_A 160 KLADFGLARIYSFQM-------ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS 222 (326)
T ss_dssp EECSCCSCCCCCGGG-------GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred EEecCcccccccCCC-------CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence 999999997653221 123456899999999999999999999999999999999999999754
No 242
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.2e-37 Score=339.39 Aligned_cols=345 Identities=28% Similarity=0.377 Sum_probs=297.6
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEe
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYN 81 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 81 (767)
++|+.|++++|.+. .+|. +..+++|++|++++|.+.+. +. +.++++|++|++++|.+++..+ ++.+++|++|+
T Consensus 46 ~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 57899999999998 7885 34699999999999999954 44 9999999999999999985444 99999999999
Q ss_pred ecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEEC
Q 004218 82 IGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNL 161 (767)
Q Consensus 82 l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 161 (767)
+++|++... ..+.++++|++|++++|.+++ ++ .+..+++ |++|+++ |.+.+. ..+.++++|++|++
T Consensus 119 L~~n~l~~~--------~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~-L~~L~l~-~~~~~~--~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 119 LFNNQITDI--------DPLKNLTNLNRLELSSNTISD-IS-ALSGLTS-LQQLSFG-NQVTDL--KPLANLTTLERLDI 184 (466)
T ss_dssp CCSSCCCCC--------GGGTTCTTCSEEEEEEEEECC-CG-GGTTCTT-CSEEEEE-ESCCCC--GGGTTCTTCCEEEC
T ss_pred CCCCCCCCC--------hHHcCCCCCCEEECCCCccCC-Ch-hhccCCc-ccEeecC-CcccCc--hhhccCCCCCEEEC
Confidence 999998743 238899999999999999984 44 5888888 9999997 555533 23899999999999
Q ss_pred cCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCC
Q 004218 162 SYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGN 241 (767)
Q Consensus 162 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (767)
++|.+++. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|++++. ..+..+++|+.|++++|.+.+.
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 99999863 458899999999999999996655 78899999999999999854 4688999999999999999965
Q ss_pred CChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhc
Q 004218 242 IPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAE 321 (767)
Q Consensus 242 ~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 321 (767)
.+ +..+++|. .+++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +..
T Consensus 259 ~~--~~~l~~L~-~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 329 (466)
T 1o6v_A 259 AP--LSGLTKLT-ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS 329 (466)
T ss_dssp GG--GTTCTTCS-EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred hh--hhcCCCCC-EEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc
Confidence 54 88888884 45999999997655 8899999999999999997654 8899999999999999997765 789
Q ss_pred cCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCCccccccccccccCCcCccc
Q 004218 322 LKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~~c~ 385 (767)
+++|+.|++++|++++. ..+..+++|+.|++++|++++.+| ...++.+..+.+.+|++.+.
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCC
Confidence 99999999999999865 578899999999999999999887 56678889999999988764
No 243
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=2.3e-39 Score=347.11 Aligned_cols=258 Identities=15% Similarity=0.153 Sum_probs=187.4
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc---CCcchhhHHHHHH---HHhcCCCCCceeEE-------ee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE---STGTWKSFFAECE---ALRNTRHRNLVKLI-------TS 519 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~---~l~~l~h~niv~~~-------~~ 519 (767)
.++|++.+.||+|+||.||+|.+. +|+.||||++... .....+.+.+|++ ++++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 467888999999999999999964 5999999999643 3345677889994 55556899999998 44
Q ss_pred eecCCc-------ccce-----eeEEEEeecCCCChhhhhcccCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 004218 520 CSSLDF-------KNME-----FLALVYEFLGNGSLGDWIHGERKN-EHGNGLNFLERLNIAIDIASALDYLHNDCEVPI 586 (767)
Q Consensus 520 ~~~~~~-------~~~~-----~~~lv~e~~~~gsL~~~l~~~~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i 586 (767)
+...+. .+++ ..++||||+ +|+|.+++...... .....+++..++.|+.|++.||+|||++ +|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 322110 0111 378999999 57999999864321 1112345688889999999999999999 99
Q ss_pred EeecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCC-----------CCCCcccch
Q 004218 587 VHCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-----------KPSTAGDVY 655 (767)
Q Consensus 587 vH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~ 655 (767)
+||||||+||+++.++.+||+|||+++.... ......| +.|+|||++.+. .++.++|||
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~---------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Dvw 297 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA---------RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAW 297 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC---------EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC---------cccCCCC-cCccChhhhcccccccccccccccCChhhhHH
Confidence 9999999999999999999999999975322 1234457 999999999877 789999999
Q ss_pred hhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCC
Q 004218 656 SFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESP 735 (767)
Q Consensus 656 slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP 735 (767)
||||++|||++|+.||........ ........ ..+++. +.+++.+||+.||
T Consensus 298 SlG~il~elltg~~Pf~~~~~~~~--~~~~~~~~-----~~~~~~----------------------~~~li~~~L~~dp 348 (377)
T 3byv_A 298 ALGLVIYWIWCADLPITKDAALGG--SEWIFRSC-----KNIPQP----------------------VRALLEGFLRYPK 348 (377)
T ss_dssp HHHHHHHHHHHSSCCC------CC--SGGGGSSC-----CCCCHH----------------------HHHHHHHHTCSSG
T ss_pred HHHHHHHHHHHCCCCCcccccccc--hhhhhhhc-----cCCCHH----------------------HHHHHHHHcCCCc
Confidence 999999999999999965432211 01110000 011111 2226678999999
Q ss_pred CCCCCHHHHHH--HHHHHHHH
Q 004218 736 GGRIDIREALR--RLKNAQKI 754 (767)
Q Consensus 736 ~~Rpt~~evl~--~L~~~~~~ 754 (767)
++|||+.|+++ .++.+...
T Consensus 349 ~~Rpt~~e~l~hp~f~~~~~~ 369 (377)
T 3byv_A 349 EDRLLPLQAMETPEYEQLRTE 369 (377)
T ss_dssp GGCCCHHHHHTSHHHHHHHHH
T ss_pred hhCCCHHHHhhChHHHHHHHH
Confidence 99999999997 44554443
No 244
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1.1e-38 Score=333.13 Aligned_cols=258 Identities=24% Similarity=0.373 Sum_probs=192.5
Q ss_pred HHHHHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCC--cchhhHHHHHHHHhcCC--CCCceeEEeeeecCC
Q 004218 449 ELRRATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIEST--GTWKSFFAECEALRNTR--HRNLVKLITSCSSLD 524 (767)
Q Consensus 449 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~ 524 (767)
.+....++|++.+.||+|+||.||+|.+.+++.||||++..... ...+.+.+|++++++++ ||||+++++++.
T Consensus 22 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~--- 98 (313)
T 3cek_A 22 SMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI--- 98 (313)
T ss_dssp EEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEE---
T ss_pred eeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEee---
Confidence 33445678999999999999999999998899999999965432 34567889999999996 599999999964
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCce
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTA 604 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~ 604 (767)
.....++||| +.+++|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||++++ +.+
T Consensus 99 --~~~~~~lv~e-~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~ 165 (313)
T 3cek_A 99 --TDQYIYMVME-CGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GML 165 (313)
T ss_dssp --CSSEEEEEEC-CCSEEHHHHHHHCS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEE
T ss_pred --cCCEEEEEEe-cCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeE
Confidence 4456799999 56789999997643 389999999999999999999999 9999999999999964 899
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCC-----------CCCCCcccchhhhHHHHHHHhCCCCCCC
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-----------EKPSTAGDVYSFGVMLLEIFTGMSPTHE 673 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slG~il~el~tg~~p~~~ 673 (767)
||+|||.++........ .......||+.|+|||++.+ ..++.++||||||+++|+|++|+.||..
T Consensus 166 kL~Dfg~~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 241 (313)
T 3cek_A 166 KLIDFGIANQMQPDTTS----VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQ 241 (313)
T ss_dssp EECCCSSSCC------------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred EEeeccccccccCcccc----ccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhh
Confidence 99999999865432211 11233468999999999875 4678899999999999999999999965
Q ss_pred cccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 674 SFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
........................++. +.+++.+||+.||++|||++|++++-
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~ell~h~ 294 (313)
T 3cek_A 242 IINQISKLHAIIDPNHEIEFPDIPEKD----------------------LQDVLKCCLKRDPKQRISIPELLAHP 294 (313)
T ss_dssp CCSHHHHHHHHHCTTSCCCCCCCSCHH----------------------HHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred HHHHHHHHHHHHhcccccCCcccchHH----------------------HHHHHHHHccCCcccCcCHHHHhcCc
Confidence 332211111111111111111111111 22266789999999999999999763
No 245
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=5.8e-38 Score=326.63 Aligned_cols=255 Identities=24% Similarity=0.333 Sum_probs=193.4
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC----CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES----TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.. ..
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~ 79 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN---EE 79 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC---C-
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc---CC
Confidence 3578999999999999999999975 58899999986432 3445778999999999999999999998642 34
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
....++||||++++ +.+++.... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 80 ~~~~~lv~e~~~~~-l~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~ 151 (305)
T 2wtk_C 80 KQKMYMVMEYCVCG-MQEMLDSVP----EKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKIS 151 (305)
T ss_dssp --CEEEEEECCSEE-HHHHHHHST----TCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEEC
T ss_pred CCeEEEEehhccCC-HHHHHHhCc----ccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEee
Confidence 45779999999876 777776543 23499999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCC--CCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP--STAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWV 685 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~ 685 (767)
|||.+......... .......||..|+|||++.+... +.++||||+|+++|+|++|+.||...... .....+
T Consensus 152 dfg~~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i 225 (305)
T 2wtk_C 152 ALGVAEALHPFAAD----DTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY--KLFENI 225 (305)
T ss_dssp CCTTCEECCTTCSS----CEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHH
T ss_pred ccccccccCccccc----cccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH--HHHHHH
Confidence 99999765332111 11234568999999999876543 77999999999999999999999653211 111111
Q ss_pred hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 686 ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 686 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..... .....+.+ .+.+++.+||+.||++|||++|++++
T Consensus 226 ~~~~~-~~~~~~~~----------------------~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 226 GKGSY-AIPGDCGP----------------------PLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp HHCCC-CCCSSSCH----------------------HHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred hcCCC-CCCCccCH----------------------HHHHHHHHHccCChhhCCCHHHHhcC
Confidence 11000 00111111 12236778999999999999999975
No 246
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=5.3e-39 Score=336.81 Aligned_cols=270 Identities=24% Similarity=0.336 Sum_probs=194.5
Q ss_pred HHHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeecc--CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccc
Q 004218 451 RRATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIE--STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 451 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~ 528 (767)
....++|++.+.||+|+||.||+|.+.+ .||+|++... .....+.+.+|+.++++++||||+++++++. ..
T Consensus 29 ~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~ 101 (319)
T 2y4i_B 29 DIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACM-----SP 101 (319)
T ss_dssp SSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEE-----CS
T ss_pred cCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEe-----cC
Confidence 3445789999999999999999999864 4999998644 2334567889999999999999999999965 34
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcc
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGD 608 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~D 608 (767)
...++||||+++++|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++ ++.+||+|
T Consensus 102 ~~~~iv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~D 172 (319)
T 2y4i_B 102 PHLAIITSLCKGRTLYSVVRDAK-----IVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITD 172 (319)
T ss_dssp SCEEEECBCCCSEEHHHHTTSSC-----CCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECC
T ss_pred CceEEEeecccCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEee
Confidence 55799999999999999997643 3489999999999999999999999 999999999999998 67999999
Q ss_pred ccchhhhhhhcCCCccccccccccCCCCccCccccCC---------CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCc
Q 004218 609 FGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG---------EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEV 679 (767)
Q Consensus 609 fg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~ 679 (767)
||+++........ ..........||+.|+|||++.+ ..++.++||||||+++|||++|+.||.......
T Consensus 173 fg~~~~~~~~~~~-~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~- 250 (319)
T 2y4i_B 173 FGLFSISGVLQAG-RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEA- 250 (319)
T ss_dssp CSCCC-----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHH-
T ss_pred cCCcccccccccc-ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-
Confidence 9998765322111 11112234458999999998864 357889999999999999999999996532211
Q ss_pred chhhHhhhh-cccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHhhc
Q 004218 680 SLVKWVESN-FPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILLKR 758 (767)
Q Consensus 680 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~ 758 (767)
....+... .+......++.. +.+++.+||+.||++|||+.|+++.|+.+.+.....
T Consensus 251 -~~~~~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~~ 307 (319)
T 2y4i_B 251 -IIWQMGTGMKPNLSQIGMGKE----------------------ISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRRL 307 (319)
T ss_dssp -HHHHHHTTCCCCCCCSSCCTT----------------------HHHHHHHHHCSSTTTSCCHHHHHHHHTTC-------
T ss_pred -HHHHhccCCCCCCCcCCCCHH----------------------HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhccC
Confidence 11111111 111000011111 122677899999999999999999999988766554
Q ss_pred CCC
Q 004218 759 RQP 761 (767)
Q Consensus 759 ~~~ 761 (767)
..|
T Consensus 308 ~~~ 310 (319)
T 2y4i_B 308 SHP 310 (319)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 247
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=9.4e-39 Score=341.74 Aligned_cols=252 Identities=12% Similarity=0.057 Sum_probs=176.1
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC---cchhhHHHHH---HHHhcCCCCCceeEEe-------e
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST---GTWKSFFAEC---EALRNTRHRNLVKLIT-------S 519 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~---~~l~~l~h~niv~~~~-------~ 519 (767)
...|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|+ +.++. +||||++++. +
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~ 139 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDA 139 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehh
Confidence 345889999999999999999976 589999999976533 2345667774 45555 7999888553 2
Q ss_pred eecCCc------------ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHH------HHHHHHHHHHHHHHHhC
Q 004218 520 CSSLDF------------KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLER------LNIAIDIASALDYLHND 581 (767)
Q Consensus 520 ~~~~~~------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~------~~i~~~i~~~l~~LH~~ 581 (767)
+..... .....+++||||++ |+|.+++..... .+++..+ ..++.|++.||+|||++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~ 213 (371)
T 3q60_A 140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-----VYVFRGDEGILALHILTAQLIRLAANLQSK 213 (371)
T ss_dssp EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-----SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-----ccchhhhhhhhhHHHHHHHHHHHHHHHHHC
Confidence 221110 01145899999998 799999986532 1444555 67889999999999999
Q ss_pred CCCCeEeecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCC--CCCCCcccchhhhH
Q 004218 582 CEVPIVHCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG--EKPSTAGDVYSFGV 659 (767)
Q Consensus 582 ~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~ 659 (767)
+|+||||||+||+++.++.+||+|||+++..... .....+|+.|+|||++.+ ..++.++||||+||
T Consensus 214 ---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~ 281 (371)
T 3q60_A 214 ---GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR---------GPASSVPVTYAPREFLNASTATFTHALNAWQLGL 281 (371)
T ss_dssp ---TEEETTCSGGGEEECTTSCEEECCGGGEEETTCE---------EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHH
T ss_pred ---CCccCcCCHHHEEECCCCCEEEEecceeeecCCC---------ccCccCCcCCcChhhccCCCCCcCccccHHHHHH
Confidence 9999999999999999999999999999865321 113446799999999987 67899999999999
Q ss_pred HHHHHHhCCCCCCCcccCCcchhhHh------hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCC
Q 004218 660 MLLEIFTGMSPTHESFAGEVSLVKWV------ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTE 733 (767)
Q Consensus 660 il~el~tg~~p~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~ 733 (767)
++|||++|+.||.............. ...+.......+++. +.+++.+||+.
T Consensus 282 il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~li~~~L~~ 339 (371)
T 3q60_A 282 SIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDF----------------------VKTLIGRFLNF 339 (371)
T ss_dssp HHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHH----------------------HHHHHHHHTCS
T ss_pred HHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHH----------------------HHHHHHHHcCC
Confidence 99999999999977643321111000 000000000111211 22266789999
Q ss_pred CCCCCCCHHHHHH
Q 004218 734 SPGGRIDIREALR 746 (767)
Q Consensus 734 dP~~Rpt~~evl~ 746 (767)
||++|||+.|+++
T Consensus 340 dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 340 DRRRRLLPLEAME 352 (371)
T ss_dssp STTTCCCHHHHTT
T ss_pred ChhhCCCHHHHhc
Confidence 9999999999986
No 248
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=2e-38 Score=344.69 Aligned_cols=198 Identities=29% Similarity=0.401 Sum_probs=168.1
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCcchhhHHHHHHHHhcC------CCCCceeEEeeeecCCcc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTGTWKSFFAECEALRNT------RHRNLVKLITSCSSLDFK 526 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~~~~~~~~~~~~ 526 (767)
..+|++.+.||+|+||.||+|.+.. ++.||||++... ....+.+.+|+++++.+ .|+||+++++++.
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~----- 169 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFT----- 169 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEE-----
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecc-----
Confidence 4679999999999999999999764 899999998642 22345677888888776 5789999999854
Q ss_pred cceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc--e
Q 004218 527 NMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT--A 604 (767)
Q Consensus 527 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~--~ 604 (767)
....+++||||++ ++|.+++.... ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +
T Consensus 170 ~~~~~~lv~e~~~-~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~v 241 (429)
T 3kvw_A 170 FRNHICMTFELLS-MNLYELIKKNK----FQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGI 241 (429)
T ss_dssp ETTEEEEEECCCC-CBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCE
T ss_pred cCCeEEEEEeccC-CCHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcce
Confidence 4467799999996 59999987654 23489999999999999999999999 9999999999999999887 9
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 242 kL~DFG~a~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 242 KVIDFGSSCYEHQR---------VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp EECCCTTCEETTCC---------CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred EEeecccceecCCc---------ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 99999999654221 12346899999999999999999999999999999999999999664
No 249
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=3e-38 Score=339.77 Aligned_cols=204 Identities=27% Similarity=0.317 Sum_probs=165.2
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc-ccceeeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF-KNMEFLA 532 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-~~~~~~~ 532 (767)
..+|++.+.||+|+||.||+|++..+..||+|++.... ....+|+++++.++||||+++++++..... .+..+++
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~----~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK----RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc----chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 45799999999999999999998877779999885332 223379999999999999999999755432 4455688
Q ss_pred EEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeC-CCCceEEccccc
Q 004218 533 LVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLD-EDMTAKVGDFGL 611 (767)
Q Consensus 533 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~-~~~~~kl~Dfg~ 611 (767)
+||||++++ +.+.+..... ....+++..+..++.|+++||+|||++ +|+||||||+||+++ .++.+||+|||+
T Consensus 115 lv~e~~~~~-l~~~~~~~~~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~ 188 (394)
T 4e7w_A 115 LVLEYVPET-VYRASRHYAK--LKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGS 188 (394)
T ss_dssp EEEECCSEE-HHHHHHHHHH--TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred EEeeccCcc-HHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCC
Confidence 999999874 4443332111 123499999999999999999999999 999999999999999 799999999999
Q ss_pred hhhhhhhcCCCccccccccccCCCCccCccccCCC-CCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 612 ARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 612 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
++....... .....||+.|+|||++.+. .++.++||||+||++|||++|+.||...
T Consensus 189 a~~~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 245 (394)
T 4e7w_A 189 AKILIAGEP-------NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGE 245 (394)
T ss_dssp CEECCTTCC-------CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccccCCCC-------CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 976533211 1234689999999998765 5899999999999999999999999764
No 250
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=342.91 Aligned_cols=208 Identities=25% Similarity=0.345 Sum_probs=156.7
Q ss_pred cCCCC-CCccccccceEEEEEEeC---CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 455 GNFSH-ENLIGSGSFGSVYKGYLR---EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 455 ~~~~~-~~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
+.|++ .++||+|+||.||+|+++ +++.||||++... .....+.+|++++++++||||+++++++.. ..+..
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~---~~~~~ 94 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLS---HADRK 94 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEE---TTTTE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEec---CCCCe
Confidence 44665 558999999999999965 4789999998643 334578899999999999999999999753 34567
Q ss_pred eEEEEeecCCCChhhhhcccCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee----CCCCc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKN---EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL----DEDMT 603 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~---~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~----~~~~~ 603 (767)
+++||||+++ +|.+++...+.. .....+++..++.++.||+.||+|||++ +|+||||||+||++ +.++.
T Consensus 95 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~ 170 (405)
T 3rgf_A 95 VWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGR 170 (405)
T ss_dssp EEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTC
T ss_pred EEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCc
Confidence 8999999975 888887643211 1123499999999999999999999999 99999999999999 67789
Q ss_pred eEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCC-CCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 604 AKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 604 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+||+|||+++........ ........||+.|+|||++.+. .++.++||||+||++|||++|+.||...
T Consensus 171 ~kl~Dfg~a~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 171 VKIADMGFARLFNSPLKP---LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp EEECCTTCCC-------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred EEEEECCCceecCCCCcc---cccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 999999999876432111 1122345789999999998874 5899999999999999999999999654
No 251
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=5.3e-38 Score=325.76 Aligned_cols=252 Identities=24% Similarity=0.355 Sum_probs=195.1
Q ss_pred HHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC---------cchhhHHHHHHHHhcCC-CCCceeEEeee
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST---------GTWKSFFAECEALRNTR-HRNLVKLITSC 520 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---------~~~~~~~~e~~~l~~l~-h~niv~~~~~~ 520 (767)
...++|++.+.||+|+||.||+|.+. +++.||||+++.... ...+.+.+|+++++++. ||||+++++++
T Consensus 14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 93 (298)
T 1phk_A 14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY 93 (298)
T ss_dssp -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence 44678999999999999999999976 589999999965431 12356789999999995 99999999995
Q ss_pred ecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC
Q 004218 521 SSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE 600 (767)
Q Consensus 521 ~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~ 600 (767)
. .....++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.
T Consensus 94 ~-----~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~ 159 (298)
T 1phk_A 94 E-----TNTFFFLVFDLMKKGELFDYLTEKV------TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDD 159 (298)
T ss_dssp E-----CSSEEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECT
T ss_pred c-----cCCeEEEEEeccCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcC
Confidence 3 4567899999999999999997643 389999999999999999999999 9999999999999999
Q ss_pred CCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccC------CCCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 601 DMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL------GEKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 601 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
++.+||+|||.+....... ......|++.|+|||++. ...++.++||||+|+++|+|++|+.||...
T Consensus 160 ~~~~kl~dfg~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 232 (298)
T 1phk_A 160 DMNIKLTDFGFSCQLDPGE-------KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR 232 (298)
T ss_dssp TCCEEECCCTTCEECCTTC-------CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CCcEEEecccchhhcCCCc-------ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCc
Confidence 9999999999997653321 123346899999999874 456889999999999999999999998653
Q ss_pred ccCCcchhhHh-hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 004218 675 FAGEVSLVKWV-ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALR 746 (767)
Q Consensus 675 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~ 746 (767)
... .....+ ...+..... ......+ .+.+++.+||+.||++|||+.|+++
T Consensus 233 ~~~--~~~~~~~~~~~~~~~~----------------~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 233 KQM--LMLRMIMSGNYQFGSP----------------EWDDYSD----TVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp SHH--HHHHHHHHTCCCCCTT----------------TGGGSCH----HHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred cHH--HHHHHHhcCCcccCcc----------------cccccCH----HHHHHHHHHccCCcccCCCHHHHHh
Confidence 211 111111 111110000 0001111 1223677899999999999999986
No 252
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=4.4e-38 Score=336.17 Aligned_cols=272 Identities=22% Similarity=0.282 Sum_probs=193.9
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC--cchhhHHHHHHHHhcCCCCCceeEEeeeecCCc-ccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST--GTWKSFFAECEALRNTRHRNLVKLITSCSSLDF-KNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-~~~~ 529 (767)
.++|.+.+.||+|+||.||+|.+. +|+.||||++..... ...+.+.+|+.+++.++||||+++++++..... ....
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 468999999999999999999976 589999999965432 235678899999999999999999999754331 1222
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.+++||||++ ++|.+++.. .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~--------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Df 188 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM--------EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDF 188 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECST
T ss_pred eEEEEEcccc-ccHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEec
Confidence 4599999997 589888732 289999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESN 688 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 688 (767)
|.++..... .....||+.|+|||++.+ ..++.++||||+||++|+|++|+.||........ +.......
T Consensus 189 g~a~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~i~~~~ 258 (371)
T 4exu_A 189 GLARHADAE---------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ-LTQILKVT 258 (371)
T ss_dssp TCC-----------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHH
T ss_pred CcccccccC---------cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHh
Confidence 999765332 133468999999999887 6789999999999999999999999965322111 11111100
Q ss_pred -cc-cch-hhhccHHHHHhh----hcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 689 -FP-KNA-QQVLDRELRQLM----MSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 689 -~~-~~~-~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.+ ... ....+....... ........+........+.+++.+||+.||++|||++|++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 259 GVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp CCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred CCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 01 000 011111111110 000000011111112233447779999999999999999875
No 253
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=1.6e-38 Score=330.67 Aligned_cols=272 Identities=24% Similarity=0.362 Sum_probs=180.8
Q ss_pred HHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 452 RATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 452 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
...++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++. ..+
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 86 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFV-----VKD 86 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEE-----SSS
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEe-----ecC
Confidence 44678999999999999999999964 58899999986442 334567889999999999999999999964 344
Q ss_pred eeEEEEeecCCCChhhhhcccCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKN--EHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~--~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
..++||||+++++|.+++...... .....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 87 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~ 163 (303)
T 2vwi_A 87 ELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIA 163 (303)
T ss_dssp CEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEEC
T ss_pred CcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEE
Confidence 579999999999999998742111 1134489999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~ 686 (767)
|||.+......... ..........||+.|+|||++.+ ..++.++||||+|+++|+|++|+.||........ ......
T Consensus 164 dfg~~~~~~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~ 241 (303)
T 2vwi_A 164 DFGVSAFLATGGDI-TRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKV-LMLTLQ 241 (303)
T ss_dssp CCHHHHHCC----------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH-HHHHHT
T ss_pred eccchheeccCCCc-cchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhH-HHHHhc
Confidence 99999865432111 11111234568999999998865 5689999999999999999999999976432211 111111
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.. +......... ...... ..+ .+.+++.+||+.||++|||+.|++++
T Consensus 242 ~~-~~~~~~~~~~--~~~~~~-------~~~----~~~~li~~~l~~dp~~Rps~~~ll~h 288 (303)
T 2vwi_A 242 ND-PPSLETGVQD--KEMLKK-------YGK----SFRKMISLCLQKDPEKRPTAAELLRH 288 (303)
T ss_dssp SS-CCCTTC-------CCCCC-------CCH----HHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred cC-CCcccccccc--chhhhh-------hhH----HHHHHHHHHccCChhhCcCHHHHhhC
Confidence 11 1100000000 000000 011 12237778999999999999999874
No 254
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=5.3e-38 Score=340.61 Aligned_cols=204 Identities=27% Similarity=0.353 Sum_probs=165.9
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc-ccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF-KNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-~~~~~~ 531 (767)
..+|++.+.||+|+||.||+|++. +|+.||||++.... ....+|+++++.++||||+++++++..... .+..++
T Consensus 53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~ 128 (420)
T 1j1b_A 53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL 128 (420)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence 346899999999999999999986 48999999986432 234479999999999999999998754322 334567
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC-CceEEcccc
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED-MTAKVGDFG 610 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~-~~~kl~Dfg 610 (767)
++||||+++ ++.+.+..... ....+++..+..++.|+++||+|||++ +|+||||||+||+++.+ +.+||+|||
T Consensus 129 ~lv~e~~~~-~l~~~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG 202 (420)
T 1j1b_A 129 NLVLDYVPE-TVYRVARHYSR--AKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFG 202 (420)
T ss_dssp EEEEECCCE-EHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred Eeehhcccc-cHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccch
Confidence 899999976 77766653211 123499999999999999999999999 99999999999999955 678999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCC-CCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+++...... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||...
T Consensus 203 ~a~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~ 260 (420)
T 1j1b_A 203 SAKQLVRGE-------PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD 260 (420)
T ss_dssp TCEECCTTC-------CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred hhhhcccCC-------CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence 998653321 11234689999999998765 6899999999999999999999999764
No 255
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=5.8e-38 Score=326.38 Aligned_cols=260 Identities=25% Similarity=0.367 Sum_probs=189.2
Q ss_pred HhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCC-------
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLD------- 524 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------- 524 (767)
..++|++.+.||+|+||.||+|.+. +++.||||++... ....+.+.+|++++++++||||+++++++....
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 3567999999999999999999975 6899999998642 334567889999999999999999999875421
Q ss_pred -cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc
Q 004218 525 -FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT 603 (767)
Q Consensus 525 -~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~ 603 (767)
.......++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~ 154 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHSEN-----LNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRN 154 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHHSC-----GGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSC
T ss_pred ccccCCceEEEEecCCCCCHHHhhhccc-----cccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCC
Confidence 134578899999999999999997543 2378899999999999999999999 9999999999999999999
Q ss_pred eEEccccchhhhhhhcCC--------CccccccccccCCCCccCccccCCC-CCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 604 AKVGDFGLARSLLERIGN--------QSSISSTHVLKGSIGYIPPEYGLGE-KPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 604 ~kl~Dfg~a~~~~~~~~~--------~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+||+|||.++........ ...........||..|+|||++.+. .++.++||||+|+++|+|++ ||...
T Consensus 155 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~ 231 (303)
T 1zy4_A 155 VKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTG 231 (303)
T ss_dssp EEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSH
T ss_pred EEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCc
Confidence 999999999765432110 0001122345689999999998764 68999999999999999998 55321
Q ss_pred ccCCcchhhHhhh---hcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 675 FAGEVSLVKWVES---NFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 675 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.... .....+.. .++........ ..+.+++.+||+.||++|||+.|++++
T Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 232 MERV-NILKKLRSVSIEFPPDFDDNKM----------------------KVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HHHH-HHHHHHHSTTCCCCTTCCTTTS----------------------HHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred hhHH-HHHHhccccccccCccccccch----------------------HHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 1110 11111110 11111111111 112237778999999999999999874
No 256
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=1.1e-37 Score=332.66 Aligned_cols=213 Identities=25% Similarity=0.341 Sum_probs=162.2
Q ss_pred HHHHHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCc-
Q 004218 448 DELRRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDF- 525 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~- 525 (767)
.+.....++|++.+.||+|+||.||+|.+. +++.||||++... ......+.+|++.++.++||||+++++++.....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD-PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC-TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC-ccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 456677899999999999999999999975 5899999988543 3334567788888899999999999999854322
Q ss_pred -ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--hCCCCCeEeecCCCCCeeeCC-C
Q 004218 526 -KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLH--NDCEVPIVHCDLKPGNILLDE-D 601 (767)
Q Consensus 526 -~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--~~~~~~ivH~Dlkp~NIl~~~-~ 601 (767)
....+.++||||+++ +|.+.+..... ....+++..+..++.|++.||.||| +. +|+||||||+||+++. +
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~ 168 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYR--RQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEAD 168 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTT
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhh--cccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCC
Confidence 334468899999986 55554432111 1234899999999999999999999 77 9999999999999996 8
Q ss_pred CceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCC-CCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 602 MTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEK-PSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 602 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+.+||+|||+++...... ......||+.|+|||++.+.. ++.++||||+||++|+|++|+.||...
T Consensus 169 ~~~kl~Dfg~a~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~ 235 (360)
T 3e3p_A 169 GTLKLCDFGSAKKLSPSE-------PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGD 235 (360)
T ss_dssp TEEEECCCTTCBCCCTTS-------CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CcEEEeeCCCceecCCCC-------CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 999999999998654321 113346899999999986654 899999999999999999999999764
No 257
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=7.4e-38 Score=356.65 Aligned_cols=259 Identities=23% Similarity=0.337 Sum_probs=199.2
Q ss_pred HhcCCCCCCccccccceEEEEEEeCC----CcEEEEEEeeccCC-cchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLRE----GISVAVKVLDIEST-GTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
..++|++.+.||+|+||.||+|.+.. +..||+|.+..... ...+.+.+|+.++++++||||+++++++..
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~----- 462 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE----- 462 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-----
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-----
Confidence 44678888999999999999999743 56799999864332 334678999999999999999999998632
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
+..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 463 -~~~~lv~E~~~~g~L~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~ 533 (656)
T 2j0j_A 463 -NPVWIIMELCTLGELRSFLQVRK-----FSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLG 533 (656)
T ss_dssp -SSCEEEEECCTTCBHHHHHHHTT-----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEEC
T ss_pred -CceEEEEEcCCCCcHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEE
Confidence 34689999999999999997543 2389999999999999999999999 99999999999999999999999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchhhHhh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~~~~~ 686 (767)
|||+++....... .......+|+.|+|||++.+..++.++||||||+++|||++ |..||...... .....+.
T Consensus 534 DFG~a~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~--~~~~~i~ 606 (656)
T 2j0j_A 534 DFGLSRYMEDSTY-----YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIE 606 (656)
T ss_dssp CCCCCCSCCC---------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHH
T ss_pred ecCCCeecCCCcc-----eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHH
Confidence 9999986533211 11123446789999999988899999999999999999997 99998653221 1111111
Q ss_pred hhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHH
Q 004218 687 SNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKI 754 (767)
Q Consensus 687 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 754 (767)
.......+..+++. +.+++.+||+.||++|||+.|+++.|+.+.+.
T Consensus 607 ~~~~~~~~~~~~~~----------------------l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 607 NGERLPMPPNCPPT----------------------LYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp HTCCCCCCTTCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCccccHH----------------------HHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 11111111111111 22367789999999999999999999998754
No 258
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=1.6e-37 Score=320.06 Aligned_cols=253 Identities=27% Similarity=0.346 Sum_probs=196.1
Q ss_pred HHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc--CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 451 RRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE--STGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 451 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
....++|++.+.||+|+||.||+|.+. +++.||+|++... .....+.+.+|++++++++||||+++++++. .
T Consensus 18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~ 92 (287)
T 2wei_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----D 92 (287)
T ss_dssp HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----C
T ss_pred HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEe-----C
Confidence 445678999999999999999999976 5899999998654 2345678899999999999999999999964 4
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC---Cce
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED---MTA 604 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~---~~~ 604 (767)
....++||||+++++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.+ +.+
T Consensus 93 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~ 163 (287)
T 2wei_A 93 SSSFYIVGELYTGGELFDEIIKRK------RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDI 163 (287)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCE
T ss_pred CCeEEEEEEccCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccE
Confidence 556799999999999999887543 289999999999999999999999 99999999999999754 479
Q ss_pred EEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhH
Q 004218 605 KVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKW 684 (767)
Q Consensus 605 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~ 684 (767)
||+|||.+....... ......||+.|+|||.+.+ .++.++||||+|+++|+|++|+.||...... .....
T Consensus 164 kL~Dfg~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~ 233 (287)
T 2wei_A 164 KIIDFGLSTCFQQNT-------KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEY--DILKR 233 (287)
T ss_dssp EECSTTGGGTBCCCS-------SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHH
T ss_pred EEeccCcceeecCCC-------ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHH
Confidence 999999997653321 1123357899999999876 4899999999999999999999999653221 11111
Q ss_pred h-hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 685 V-ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 685 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
+ ...++..... ...+.+. +.+++.+||+.||++|||+.|++++
T Consensus 234 ~~~~~~~~~~~~----------------~~~~~~~----~~~li~~~l~~dp~~Rps~~ell~h 277 (287)
T 2wei_A 234 VETGKYAFDLPQ----------------WRTISDD----AKDLIRKMLTFHPSLRITATQCLEH 277 (287)
T ss_dssp HHHCCCCCCSGG----------------GTTSCHH----HHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHcCCCCCCchh----------------hhhcCHH----HHHHHHHHcccChhhCcCHHHHhcC
Confidence 1 1111111000 0001111 2236778999999999999999984
No 259
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.1e-37 Score=328.37 Aligned_cols=254 Identities=21% Similarity=0.313 Sum_probs=170.6
Q ss_pred HhcCCCCCC-ccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 453 ATGNFSHEN-LIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 453 ~~~~~~~~~-~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
..++|.+.+ .||+|+||.||+|.+. +++.||||++... .....+....++.++||||+++++++... ......
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 100 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS----PKARQEVDHHWQASGGPHIVCILDVYENM-HHGKRC 100 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc----HHHHHHHHHHHHhcCCCChHHHHHHHhhc-cCCCce
Confidence 357888855 6999999999999977 5899999998632 12222233345667999999999987542 123566
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC---CCceEEc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE---DMTAKVG 607 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~ 607 (767)
.++||||+++|+|.+++.... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+
T Consensus 101 ~~lv~e~~~gg~L~~~l~~~~----~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~ 173 (336)
T 3fhr_A 101 LLIIMECMEGGELFSRIQERG----DQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLT 173 (336)
T ss_dssp EEEEEECCTTEEHHHHHHTC-----CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeccCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEe
Confidence 899999999999999998653 23599999999999999999999999 9999999999999986 4569999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcch--hhHh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSL--VKWV 685 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~--~~~~ 685 (767)
|||+++..... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||.......... ....
T Consensus 174 Dfg~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~ 245 (336)
T 3fhr_A 174 DFGFAKETTQN--------ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRI 245 (336)
T ss_dssp CCTTCEEC------------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----------------
T ss_pred ccccceecccc--------ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhh
Confidence 99999754322 1233458999999999988889999999999999999999999996543321100 0000
Q ss_pred ---hhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 004218 686 ---ESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRL 748 (767)
Q Consensus 686 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 748 (767)
...++......+++ .+.+++.+||+.||++|||++|++++-
T Consensus 246 ~~~~~~~~~~~~~~~~~----------------------~~~~li~~~L~~dP~~Rpt~~ell~hp 289 (336)
T 3fhr_A 246 RLGQYGFPNPEWSEVSE----------------------DAKQLIRLLLKTDPTERLTITQFMNHP 289 (336)
T ss_dssp -----CCCTTTSTTCCH----------------------HHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred hccccccCchhhccCCH----------------------HHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence 00011100111111 122366789999999999999999853
No 260
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.8e-36 Score=332.88 Aligned_cols=326 Identities=28% Similarity=0.413 Sum_probs=283.6
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEE
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMY 80 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 80 (767)
+++|++|||++|.++ .+|. +..+++|++|++++|.+.+..+ +.++++|++|++++|.+++. +. +..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEE
T ss_pred hcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEE
Confidence 578999999999998 6765 5579999999999999995444 99999999999999999854 33 8999999999
Q ss_pred eecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEE
Q 004218 81 NIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLN 160 (767)
Q Consensus 81 ~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 160 (767)
++++|.+... ..+..+++|+.|+++ |.+.+. ..+.++++ |++|++++|+++.. ..+..+++|++|+
T Consensus 140 ~l~~n~l~~~--------~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 205 (466)
T 1o6v_A 140 ELSSNTISDI--------SALSGLTSLQQLSFG-NQVTDL--KPLANLTT-LERLDISSNKVSDI--SVLAKLTNLESLI 205 (466)
T ss_dssp EEEEEEECCC--------GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred ECCCCccCCC--------hhhccCCcccEeecC-CcccCc--hhhccCCC-CCEEECcCCcCCCC--hhhccCCCCCEEE
Confidence 9999998643 358889999999997 555533 23888888 99999999999853 4589999999999
Q ss_pred CcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCC
Q 004218 161 LSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNG 240 (767)
Q Consensus 161 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (767)
+++|.+.+..+ +..+++|++|++++|++.+. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 206 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 206 ATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred ecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc
Confidence 99999997544 78899999999999999854 468899999999999999987654 8899999999999999996
Q ss_pred CCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhh
Q 004218 241 NIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILA 320 (767)
Q Consensus 241 ~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 320 (767)
..+ +..+++| +.+++++|++++..+ ++.+++|+.|++++|.+++..| +..+++|+.|++++|++++. ..+.
T Consensus 280 ~~~--~~~l~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 350 (466)
T 1o6v_A 280 ISP--LAGLTAL-TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLA 350 (466)
T ss_dssp CGG--GTTCTTC-SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred ccc--ccCCCcc-CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhc
Confidence 444 8888888 455999999997655 8899999999999999997766 88999999999999999965 5789
Q ss_pred ccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCC
Q 004218 321 ELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVP 364 (767)
Q Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 364 (767)
.+++|+.|++++|++++..| +..+++|+.|++++|++++.+.
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCB
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCch
Confidence 99999999999999998776 8999999999999999998654
No 261
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=5.3e-38 Score=337.18 Aligned_cols=203 Identities=32% Similarity=0.414 Sum_probs=167.9
Q ss_pred HHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCC-CC-----CceeEEeeeecC
Q 004218 451 RRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTR-HR-----NLVKLITSCSSL 523 (767)
Q Consensus 451 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~~~~~~~~~ 523 (767)
....++|++.+.||+|+||.||+|.+. +++.||||++... ......+.+|+++++.++ |+ +|+++++++.
T Consensus 50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~-- 126 (382)
T 2vx3_A 50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFM-- 126 (382)
T ss_dssp CEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEE--
T ss_pred CEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeec--
Confidence 344679999999999999999999976 5889999998632 233456778888888874 44 4999999854
Q ss_pred CcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeC--CC
Q 004218 524 DFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLD--ED 601 (767)
Q Consensus 524 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~--~~ 601 (767)
.....++||||+++ +|.+++..... ..+++..+..++.|++.||+|||++ ..+|+||||||+||+++ .+
T Consensus 127 ---~~~~~~lv~e~~~~-~L~~~l~~~~~----~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~ 197 (382)
T 2vx3_A 127 ---FRNHLCLVFEMLSY-NLYDLLRNTNF----RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKR 197 (382)
T ss_dssp ---ETTEEEEEEECCCC-BHHHHHHHTTT----SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTS
T ss_pred ---cCCceEEEEecCCC-CHHHHHhhcCc----CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCC
Confidence 44677999999964 99999976542 3489999999999999999999952 23999999999999995 47
Q ss_pred CceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 602 MTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 602 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 198 ~~~kL~DFG~a~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 198 SAIKIVDFGSSCQLGQR---------IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp CCEEECCCTTCEETTCC---------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CcEEEEeccCceecccc---------cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 88999999999765322 12356899999999999999999999999999999999999999754
No 262
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=2.3e-37 Score=335.04 Aligned_cols=205 Identities=26% Similarity=0.344 Sum_probs=169.3
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCC--------CCCceeEEeeeecCC
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTR--------HRNLVKLITSCSSLD 524 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~~~~~~~~~~ 524 (767)
.++|++.+.||+|+||.||+|++. +++.||||++... ....+.+.+|+++++.++ |+||+++++++....
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 478999999999999999999965 4889999998632 234567889999999885 788999999865321
Q ss_pred cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCC--
Q 004218 525 FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDM-- 602 (767)
Q Consensus 525 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~-- 602 (767)
......++||||+ ++++.+++.... ...+++..++.++.||+.||+|||+++ ||+||||||+||+++.++
T Consensus 115 -~~~~~~~lv~e~~-~~~l~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~ 186 (397)
T 1wak_A 115 -VNGTHICMVFEVL-GHHLLKWIIKSN----YQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQY 186 (397)
T ss_dssp -TTEEEEEEEECCC-CCBHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHH
T ss_pred -CCCceEEEEEecc-CccHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchh
Confidence 2456789999999 557766665432 234999999999999999999999852 899999999999999775
Q ss_pred -----------------------------------------------ceEEccccchhhhhhhcCCCccccccccccCCC
Q 004218 603 -----------------------------------------------TAKVGDFGLARSLLERIGNQSSISSTHVLKGSI 635 (767)
Q Consensus 603 -----------------------------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~ 635 (767)
.+||+|||.++..... .....||+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~---------~~~~~gt~ 257 (397)
T 1wak_A 187 IRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH---------FTEDIQTR 257 (397)
T ss_dssp HHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC---------SCSCCSCG
T ss_pred hhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc---------CccCCCCC
Confidence 7999999999765322 12346899
Q ss_pred CccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCccc
Q 004218 636 GYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFA 676 (767)
Q Consensus 636 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~ 676 (767)
.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 258 ~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~ 298 (397)
T 1wak_A 258 QYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSG 298 (397)
T ss_dssp GGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCC
T ss_pred cccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcc
Confidence 99999999999999999999999999999999999976443
No 263
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=2.8e-37 Score=326.81 Aligned_cols=198 Identities=26% Similarity=0.356 Sum_probs=168.0
Q ss_pred hcCCCCCCccccccceEEEEEEe-C-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCC------CceeEEeeeecCCc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYL-R-EGISVAVKVLDIESTGTWKSFFAECEALRNTRHR------NLVKLITSCSSLDF 525 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~-~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~------niv~~~~~~~~~~~ 525 (767)
.++|++.+.||+|+||.||+|.+ . +++.||||++... ....+.+.+|+++++.++|+ +++++++++.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~---- 87 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFE---- 87 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEE----
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccc----
Confidence 46899999999999999999997 3 5889999998632 23456788899999888654 5999999854
Q ss_pred ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC-----
Q 004218 526 KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE----- 600 (767)
Q Consensus 526 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~----- 600 (767)
..+..++||||+ +++|.+++.... ...+++.++..++.|++.||+|||++ +|+||||||+||+++.
T Consensus 88 -~~~~~~lv~e~~-~~~l~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 158 (339)
T 1z57_A 88 -HHGHICIVFELL-GLSTYDFIKENG----FLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTE 158 (339)
T ss_dssp -ETTEEEEEEECC-CCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEE
T ss_pred -cCCcEEEEEcCC-CCCHHHHHHhcC----CCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEecccccc
Confidence 455789999999 889999997654 23489999999999999999999999 9999999999999987
Q ss_pred --------------CCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh
Q 004218 601 --------------DMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT 666 (767)
Q Consensus 601 --------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t 666 (767)
++.+||+|||.++..... .....||+.|+|||++.+..++.++||||+||++|||++
T Consensus 159 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 229 (339)
T 1z57_A 159 AYNPKIKRDERTLINPDIKVVDFGSATYDDEH---------HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYL 229 (339)
T ss_dssp EEC----CEEEEESCCCEEECCCSSCEETTSC---------CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCccccccccccCCCceEeeCcccccCccc---------cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHh
Confidence 668999999999754321 123468999999999999999999999999999999999
Q ss_pred CCCCCCCc
Q 004218 667 GMSPTHES 674 (767)
Q Consensus 667 g~~p~~~~ 674 (767)
|+.||...
T Consensus 230 g~~pf~~~ 237 (339)
T 1z57_A 230 GFTVFPTH 237 (339)
T ss_dssp SSCSCCCS
T ss_pred CCCCCCCC
Confidence 99999654
No 264
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=337.94 Aligned_cols=252 Identities=23% Similarity=0.324 Sum_probs=180.5
Q ss_pred HhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCcccceee
Q 004218 453 ATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 453 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 531 (767)
...+|++.+.||+|+||+||.....+++.||||++... ....+.+|+++++.+ +||||+++++++ .+....
T Consensus 22 ~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~l~~~~-----~~~~~~ 93 (432)
T 3p23_A 22 GKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE---CFSFADREVQLLRESDEHPNVIRYFCTE-----KDRQFQ 93 (432)
T ss_dssp TTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT---TEEECHHHHHHHHHSCCCTTBCCEEEEE-----EETTEE
T ss_pred ccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH---HHHHHHHHHHHHHhccCCCCcCeEEEEE-----ecCCEE
Confidence 34568888999999999976655667999999998643 234567899999999 799999999985 345667
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC-----CCceEE
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE-----DMTAKV 606 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~-----~~~~kl 606 (767)
++||||++ |+|.+++..... ..++.++..++.|++.||+|||++ +|+||||||+||+++. ...+||
T Consensus 94 ~lv~E~~~-g~L~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL 164 (432)
T 3p23_A 94 YIAIELCA-ATLQEYVEQKDF-----AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMI 164 (432)
T ss_dssp EEEEECCS-EEHHHHHHSSSC-----CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEE
T ss_pred EEEEECCC-CCHHHHHHhcCC-----CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEE
Confidence 99999996 599999976542 244556788999999999999999 9999999999999953 336889
Q ss_pred ccccchhhhhhhcCCCccccccccccCCCCccCccccC---CCCCCCcccchhhhHHHHHHHh-CCCCCCCcccCCcchh
Q 004218 607 GDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL---GEKPSTAGDVYSFGVMLLEIFT-GMSPTHESFAGEVSLV 682 (767)
Q Consensus 607 ~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slG~il~el~t-g~~p~~~~~~~~~~~~ 682 (767)
+|||+++........ ........||+.|+|||++. ...++.++||||+||++|||++ |..||....... .
T Consensus 165 ~DFG~a~~~~~~~~~---~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~---~ 238 (432)
T 3p23_A 165 SDFGLCKKLAVGRHS---FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQ---A 238 (432)
T ss_dssp CCTTEEECC---------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHH---H
T ss_pred ecccceeeccCCCcc---eeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHH---H
Confidence 999999866432111 11223456999999999987 4567889999999999999999 889985432111 1
Q ss_pred hHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 004218 683 KWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALR 746 (767)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~ 746 (767)
............ .. .. .....+.+++.+||+.||++|||++|+++
T Consensus 239 ~~~~~~~~~~~~---~~------------~~----~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 239 NILLGACSLDCL---HP------------EK----HEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp HHHTTCCCCTTS---CT------------TC----HHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHhccCCcccc---Cc------------cc----cccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 111110000000 00 00 01111233777999999999999999995
No 265
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=9.8e-38 Score=326.61 Aligned_cols=246 Identities=22% Similarity=0.304 Sum_probs=192.6
Q ss_pred HHHHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCc------chhhHHHHHHHHhcCC--CCCceeEEee
Q 004218 449 ELRRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTG------TWKSFFAECEALRNTR--HRNLVKLITS 519 (767)
Q Consensus 449 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~--h~niv~~~~~ 519 (767)
+.....++|++.+.||+|+||.||+|.+. +++.||||++...... ..+.+.+|+.++++++ ||||++++++
T Consensus 37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~ 116 (320)
T 3a99_A 37 EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW 116 (320)
T ss_dssp ---CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEE
T ss_pred ccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEE
Confidence 33445678999999999999999999965 5899999999654322 2356778999999996 5999999999
Q ss_pred eecCCcccceeeEEEEeecCC-CChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee
Q 004218 520 CSSLDFKNMEFLALVYEFLGN-GSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL 598 (767)
Q Consensus 520 ~~~~~~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~ 598 (767)
+. ..+..++|||++.+ ++|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||++
T Consensus 117 ~~-----~~~~~~lv~e~~~~~~~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll 182 (320)
T 3a99_A 117 FE-----RPDSFVLILERPEPVQDLFDFITERG------ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILI 182 (320)
T ss_dssp EE-----CSSEEEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEE
T ss_pred Ee-----cCCcEEEEEEcCCCCccHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEE
Confidence 64 45567999999976 89999997643 389999999999999999999999 99999999999999
Q ss_pred C-CCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCccc
Q 004218 599 D-EDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHESFA 676 (767)
Q Consensus 599 ~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~~~ 676 (767)
+ +++.+||+|||+++..... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||.....
T Consensus 183 ~~~~~~~kL~Dfg~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~ 254 (320)
T 3a99_A 183 DLNRGELKLIDFGSGALLKDT--------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE 254 (320)
T ss_dssp ETTTTEEEECCCTTCEECCSS--------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH
T ss_pred eCCCCCEEEeeCccccccccc--------cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh
Confidence 9 7899999999999765322 1123458999999999877665 6789999999999999999999864210
Q ss_pred CCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 677 GEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
...... .....+++. +.+++.+||+.||++|||++|++++
T Consensus 255 -------~~~~~~--~~~~~~~~~----------------------~~~li~~~l~~dp~~Rps~~~ll~h 294 (320)
T 3a99_A 255 -------IIRGQV--FFRQRVSSE----------------------CQHLIRWCLALRPSDRPTFEEIQNH 294 (320)
T ss_dssp -------HHHCCC--CCSSCCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred -------hhcccc--cccccCCHH----------------------HHHHHHHHccCChhhCcCHHHHhcC
Confidence 111000 001111111 2236778999999999999999874
No 266
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=329.05 Aligned_cols=272 Identities=23% Similarity=0.282 Sum_probs=192.8
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC--cchhhHHHHHHHHhcCCCCCceeEEeeeecCCc-ccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST--GTWKSFFAECEALRNTRHRNLVKLITSCSSLDF-KNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-~~~~ 529 (767)
.++|.+.+.||+|+||.||+|.+. +|+.||||++..... ...+.+.+|+.+++.++||||+++++++..... ....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 368999999999999999999975 589999999865322 234678899999999999999999999754321 1223
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..++||||++ ++|.+++.. .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~--------~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Df 170 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL--------KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDF 170 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECST
T ss_pred eEEEEecccc-CCHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeec
Confidence 4699999997 588888742 289999999999999999999999 9999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCC-CCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhh-
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-EKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVES- 687 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~- 687 (767)
|.++..... .....||+.|+|||++.+ ..++.++||||+|+++|+|++|+.||....... .+......
T Consensus 171 g~~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~i~~~~ 240 (353)
T 3coi_A 171 GLARHADAE---------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVT 240 (353)
T ss_dssp TCTTC-----------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH-HHHHHHHHH
T ss_pred ccccCCCCC---------ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHh
Confidence 999764322 123468999999999877 678999999999999999999999996532211 11111110
Q ss_pred hcc-cc-hhhhccHHHHHhhhcch---h-hHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 688 NFP-KN-AQQVLDRELRQLMMSSE---S-QTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 688 ~~~-~~-~~~~~~~~l~~~~~~~~---~-~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
..+ .. .....+......+...+ . ............+.+++.+||+.||++|||++|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 306 (353)
T 3coi_A 241 GVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 306 (353)
T ss_dssp CBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred CCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 000 00 01111111111110000 0 0000000111223347779999999999999999875
No 267
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=322.98 Aligned_cols=246 Identities=23% Similarity=0.326 Sum_probs=185.7
Q ss_pred HHHHHhcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC------cchhhHHHHHHHHhcC----CCCCceeEE
Q 004218 449 ELRRATGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST------GTWKSFFAECEALRNT----RHRNLVKLI 517 (767)
Q Consensus 449 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l----~h~niv~~~ 517 (767)
+.....++|++.+.||+|+||.||+|.+. +++.||||++..... .....+.+|+.+++++ +||||++++
T Consensus 25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~ 104 (312)
T 2iwi_A 25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL 104 (312)
T ss_dssp --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence 34556789999999999999999999964 588999999964432 2334566899999888 899999999
Q ss_pred eeeecCCcccceeeEEEEee-cCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCe
Q 004218 518 TSCSSLDFKNMEFLALVYEF-LGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNI 596 (767)
Q Consensus 518 ~~~~~~~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NI 596 (767)
+++. ..+..++|||| +++++|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||
T Consensus 105 ~~~~-----~~~~~~~v~e~~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Ni 170 (312)
T 2iwi_A 105 DWFE-----TQEGFMLVLERPLPAQDLFDYITEKG------PLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENI 170 (312)
T ss_dssp EEC----------CEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGE
T ss_pred EEEe-----cCCeEEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhE
Confidence 9853 44567999999 78999999997643 389999999999999999999999 999999999999
Q ss_pred eeC-CCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCC-CCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 597 LLD-EDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKP-STAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 597 l~~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
+++ .++.+||+|||.++..... ......||..|+|||++.+..+ +.++||||+|+++|+|++|+.||...
T Consensus 171 l~~~~~~~~kl~dfg~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 242 (312)
T 2iwi_A 171 LIDLRRGCAKLIDFGSGALLHDE--------PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD 242 (312)
T ss_dssp EEETTTTEEEECCCSSCEECCSS--------CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred EEeCCCCeEEEEEcchhhhcccC--------cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh
Confidence 999 8899999999999765332 1233458999999999877666 45899999999999999999998642
Q ss_pred ccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 675 FAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
. ....... .....++.. +.+++.+||+.||++|||++|++++
T Consensus 243 ~-------~~~~~~~--~~~~~~~~~----------------------~~~li~~~l~~~p~~Rps~~e~l~~ 284 (312)
T 2iwi_A 243 Q-------EILEAEL--HFPAHVSPD----------------------CCALIRRCLAPKPSSRPSLEEILLD 284 (312)
T ss_dssp H-------HHHHTCC--CCCTTSCHH----------------------HHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred H-------HHhhhcc--CCcccCCHH----------------------HHHHHHHHccCChhhCcCHHHHhcC
Confidence 1 1111000 001111111 2236778999999999999999974
No 268
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=334.40 Aligned_cols=302 Identities=19% Similarity=0.179 Sum_probs=248.4
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEe
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYN 81 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 81 (767)
+++++|||++|+++ .++...+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 47899999999999 67666667899999999999999988899999999999999999999966666789999999999
Q ss_pred ecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEEC
Q 004218 82 IGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNL 161 (767)
Q Consensus 82 l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 161 (767)
|++|++... .+..+.++++|++|++++|.+++..+..+..+++ |++|++++|++++..+..|.++++|+.|+|
T Consensus 111 Ls~n~i~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 111 ISENKIVIL------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp CTTSCCCEE------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT-CCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCccccC------ChhHccccccCCEEECCCCccceeChhhccCCCC-CCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 999998753 3456788999999999999999888999999998 999999999999877778999999999999
Q ss_pred cCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCC
Q 004218 162 SYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGN 241 (767)
Q Consensus 162 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (767)
++|.+.+..+..|..+++|++|++++|.+.+.+|.......+|++|+|++|+++...+..|..+++|+.|+|++|.+++.
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence 99999988888999999999999999988878887777777999999999999976667899999999999999998854
Q ss_pred CChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhc
Q 004218 242 IPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAE 321 (767)
Q Consensus 242 ~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 321 (767)
.+..+.. +++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..|..
T Consensus 264 ~~~~~~~-------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 264 EGSMLHE-------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp CTTSCTT-------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred Chhhccc-------------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 4444444 445555555555555555555555555555555555555544445555
Q ss_pred cCCceEEEcCCcccC
Q 004218 322 LKGLEVLDLSSNKLS 336 (767)
Q Consensus 322 l~~L~~L~Ls~N~l~ 336 (767)
+++|+.|+|++|++.
T Consensus 319 l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 319 VGNLETLILDSNPLA 333 (477)
T ss_dssp GGGCCEEECCSSCEE
T ss_pred CcccCEEEccCCCcc
Confidence 555666666666555
No 269
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.7e-36 Score=322.73 Aligned_cols=333 Identities=19% Similarity=0.202 Sum_probs=256.1
Q ss_pred CCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCC
Q 004218 26 LPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNST 105 (767)
Q Consensus 26 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 105 (767)
+++++.|++++|.+....+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|.+...+ +..+.+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC------HHHhcCCC
Confidence 677888888888887544455778888888888888887666667888888888888888876432 33467778
Q ss_pred CCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEc
Q 004218 106 RLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDL 185 (767)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 185 (767)
+|++|++++|+++...+..+..+++ |++|++++|++++..+..|..+++|++|++++|.+++. .+..+++|++|++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCC-CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 8888888888887333333567776 88888888888877777788888888888888888754 3556788888888
Q ss_pred cCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCC
Q 004218 186 AGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDG 265 (767)
Q Consensus 186 ~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~ 265 (767)
++|.+.+ +...++|++|++++|.++.. |.. ..++|+.|++++|.+++. ..+..+++|.. +++++|.+++
T Consensus 194 ~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~-L~Ls~n~l~~ 262 (390)
T 3o6n_A 194 SYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVE-VDLSYNELEK 262 (390)
T ss_dssp CSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSE-EECCSSCCCE
T ss_pred ccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccE-EECCCCcCCC
Confidence 8888773 23346788888888888754 332 347888888888888753 56777777744 4888888888
Q ss_pred CCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccc
Q 004218 266 TLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQN 345 (767)
Q Consensus 266 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (767)
..|..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|+|++|+++.. + +..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~ 337 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 337 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chh
Confidence 888889999999999999999985 5666788999999999999998 5677788999999999999999854 3 678
Q ss_pred cccCceEeccCCcCcCcCCCCccccccccccccCCcCccc
Q 004218 346 LRALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 346 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~~c~ 385 (767)
+++|+.|++++|++++... ...+..+....+.+++..|.
T Consensus 338 ~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp TCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCC
T ss_pred hccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceec
Confidence 8999999999999987532 23345566666778888885
No 270
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=2.2e-37 Score=337.27 Aligned_cols=257 Identities=24% Similarity=0.325 Sum_probs=179.6
Q ss_pred cCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCcccceeeEE
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNMEFLAL 533 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~~l 533 (767)
+.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|+++++++ +||||+++++++ ......++
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~-----~~~~~~~l 86 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSE-----TTDRFLYI 86 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEE-----ECSSEEEE
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEE-----ecCCeEEE
Confidence 345556889999999998777677999999998643 235678999999876 899999999985 45567899
Q ss_pred EEeecCCCChhhhhcccCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCC-----------
Q 004218 534 VYEFLGNGSLGDWIHGERKNEHG-NGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDED----------- 601 (767)
Q Consensus 534 v~e~~~~gsL~~~l~~~~~~~~~-~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~----------- 601 (767)
||||++ |+|.+++......... ...++..++.++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 87 v~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~ 162 (434)
T 2rio_A 87 ALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGA 162 (434)
T ss_dssp EECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCC
T ss_pred EEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCC
Confidence 999996 5999999865432111 1123445678999999999999999 99999999999999754
Q ss_pred --CceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCC-------CCCCCcccchhhhHHHHHHHh-CCCCC
Q 004218 602 --MTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLG-------EKPSTAGDVYSFGVMLLEIFT-GMSPT 671 (767)
Q Consensus 602 --~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~slG~il~el~t-g~~p~ 671 (767)
+.+||+|||+++......... ........||+.|+|||++.+ ..++.++||||+||++|||++ |+.||
T Consensus 163 ~~~~~kL~DFG~a~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf 240 (434)
T 2rio_A 163 ENLRILISDFGLCKKLDSGQSSF--RTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPF 240 (434)
T ss_dssp CSCEEEECCCTTCEECCC----------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred CceEEEEcccccceecCCCCccc--eeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCC
Confidence 489999999998654322111 111234569999999999865 568999999999999999999 99999
Q ss_pred CCcccCCcchhhHhhhhcccc-hhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 004218 672 HESFAGEVSLVKWVESNFPKN-AQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALR 746 (767)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~ 746 (767)
....... .......+... ....... . +...+.+++.+||+.||++|||+.|+++
T Consensus 241 ~~~~~~~---~~i~~~~~~~~~~~~~~~~--------------~----~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 241 GDKYSRE---SNIIRGIFSLDEMKCLHDR--------------S----LIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp CSTTTHH---HHHHHTCCCCCCCTTCCCH--------------H----HHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCchhhH---HHHhcCCCCcccccccccc--------------c----chHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 6543221 11111111110 0000000 1 1112233777999999999999999986
No 271
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=4.8e-37 Score=322.88 Aligned_cols=256 Identities=22% Similarity=0.292 Sum_probs=172.3
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC-cchhhHHHHHH-HHhcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST-GTWKSFFAECE-ALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~-~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|.+. +|+.||||++..... ....++..|+. +++.++||||+++++++. ..+.
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~-----~~~~ 95 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALF-----REGD 95 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEE-----CSSE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEE-----eCCc
Confidence 368999999999999999999975 589999999975432 23345566666 677789999999999964 3456
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.++||||+++ +|.+++..... .....+++..+..++.|++.||.|||+. .+|+||||||+||+++.++.+||+|||
T Consensus 96 ~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg 171 (327)
T 3aln_A 96 CWICMELMST-SFDKFYKYVYS-VLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFG 171 (327)
T ss_dssp EEEEECCCSE-EHHHHHHHHHH-TTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCS
T ss_pred eEEEEeecCC-ChHHHHHHHHh-hhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCC
Confidence 7999999985 88888763211 0123489999999999999999999984 289999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCcccc----CCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhh
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYG----LGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVE 686 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~ 686 (767)
+++....... .....||+.|+|||++ .+..++.++||||||+++|+|++|+.||...............
T Consensus 172 ~~~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~ 244 (327)
T 3aln_A 172 ISGQLVDSIA-------KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVK 244 (327)
T ss_dssp SSCC-------------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCC
T ss_pred Cceecccccc-------cccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhc
Confidence 9976543211 1223589999999998 4567899999999999999999999999653222111111111
Q ss_pred hhccc---chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 687 SNFPK---NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 687 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
...+. .....+++. +.+++.+||+.||++|||+.|++++
T Consensus 245 ~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~ell~h 286 (327)
T 3aln_A 245 GDPPQLSNSEEREFSPS----------------------FINFVNLCLTKDESKRPKYKELLKH 286 (327)
T ss_dssp SCCCCCCCCSSCCCCHH----------------------HHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred CCCCCCCCcccccCCHH----------------------HHHHHHHHhhCChhhCcCHHHHHhC
Confidence 11111 000111111 2226678999999999999999874
No 272
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-35 Score=339.89 Aligned_cols=358 Identities=23% Similarity=0.237 Sum_probs=285.8
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEE
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMY 80 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 80 (767)
|++|++|||++|+|+ .||...|..+++|++|+|++|++++..+++|.++++|++|+|++|.+++..+..|+.+++|++|
T Consensus 75 l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153 (635)
T ss_dssp CTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred CCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCee
Confidence 578999999999998 8998888889999999999999997777889999999999999999997666789999999999
Q ss_pred eecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhcc---ccCeEEccCCcccccCC----------
Q 004218 81 NIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSN---VLSKLYMGGNRFYGKIP---------- 147 (767)
Q Consensus 81 ~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---~L~~L~l~~n~i~~~~~---------- 147 (767)
+|++|.+... ..+..+.++++|++|++++|++++..+..+..+.+ .+..++++.|.+....+
T Consensus 154 ~Ls~N~l~~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 154 NVAHNLIQSF-----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp ECCSSCCCCC-----CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccccCccccC-----CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 9999999765 55677889999999999999999877777665543 01233333333221100
Q ss_pred --------------------------------------------------------------------------------
Q 004218 148 -------------------------------------------------------------------------------- 147 (767)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (767)
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence
Q ss_pred -------------ccccCCCCCCEEECcCCcCcccCcc-------------------ccCCCCCCCEEEccCCcccc---
Q 004218 148 -------------TSIGRLRSLTLLNLSYNSISGEILT-------------------EIGQLQELQSLDLAGNQISG--- 192 (767)
Q Consensus 148 -------------~~l~~l~~L~~L~l~~n~i~~~~~~-------------------~~~~l~~L~~L~L~~n~i~~--- 192 (767)
..+....+|+.|++.+|.+...... ....+++|+.|++++|.+..
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence 0122233455666666554432211 12245667777777766642
Q ss_pred ----------------------ccCcCcccCCCCceeeCCCCcCCCCC-cccccCccccccccccCcccCCCCChhhccc
Q 004218 193 ----------------------SIPNTLGNLKKLNQIDLSGNELASEI-PTSFGNFQNLLSIDLSNNKLNGNIPKEILSL 249 (767)
Q Consensus 193 ----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 249 (767)
..+..+..+++|+.++++.|...... +..|..+++++.++++.|.+.+..+..+..+
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~ 468 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 468 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc
Confidence 22344566778888888877765443 4568899999999999999998888888888
Q ss_pred ccccceeecccccCC-CCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEE
Q 004218 250 SSLTTIVNLSKNFLD-GTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVL 328 (767)
Q Consensus 250 ~~l~~~l~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 328 (767)
+.+ +.+++++|.+. +..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|
T Consensus 469 ~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 469 SSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp TTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred hhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 888 45599999754 4578889999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccCCCCCcccccc-ccCceEeccCCcCcCcCCC
Q 004218 329 DLSSNKLSGSIPSDLQNL-RALRSLNLTFNNLEGVVPR 365 (767)
Q Consensus 329 ~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~ 365 (767)
+|++|+|++..|..+..+ ++|+.|+|++|++++...-
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 999999999999999988 6899999999999986653
No 273
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=3e-37 Score=331.10 Aligned_cols=203 Identities=23% Similarity=0.325 Sum_probs=167.7
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCC-----------CCCceeEEeeee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTR-----------HRNLVKLITSCS 521 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~~~~~~~ 521 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++... ....+.+.+|+++++++. ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 368999999999999999999974 5899999998632 223466788999988875 899999999875
Q ss_pred cCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeC--
Q 004218 522 SLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLD-- 599 (767)
Q Consensus 522 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~-- 599 (767)
... .....+++||||+ +++|.+++.... ...+++..+..++.|++.||+|||+++ +|+||||||+||+++
T Consensus 97 ~~~-~~~~~~~lv~e~~-~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~ 168 (373)
T 1q8y_A 97 HKG-PNGVHVVMVFEVL-GENLLALIKKYE----HRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIV 168 (373)
T ss_dssp EEE-TTEEEEEEEECCC-CEEHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEE
T ss_pred ccC-CCCceEEEEEecC-CCCHHHHHHHhh----ccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEecc
Confidence 422 2345789999999 889999997643 234899999999999999999999842 899999999999994
Q ss_pred ----CCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCc
Q 004218 600 ----EDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHES 674 (767)
Q Consensus 600 ----~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 674 (767)
..+.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 169 ~~~~~~~~~kl~Dfg~a~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 238 (373)
T 1q8y_A 169 DSPENLIQIKIADLGNACWYDEH---------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD 238 (373)
T ss_dssp ETTTTEEEEEECCCTTCEETTBC---------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred CCCcCcceEEEcccccccccCCC---------CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 4458999999999765332 12346899999999999999999999999999999999999999754
No 274
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=6.4e-37 Score=341.35 Aligned_cols=207 Identities=28% Similarity=0.414 Sum_probs=173.2
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeecc-CCcchhhHHHHHHHHhcCCCCCceeEEeeeecCC-ccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIE-STGTWKSFFAECEALRNTRHRNLVKLITSCSSLD-FKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|.+. +|+.||||++... .....+.+.+|++++++++||||+++++++.... ...+..
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 478999999999999999999975 5899999998654 2334567889999999999999999999875422 233667
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCc---eEEc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMT---AKVG 607 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~---~kl~ 607 (767)
.++||||+++|+|.+++..... ...+++..++.++.|++.||+|||+. ||+||||||+||+++.++. +||+
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~---~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~ 166 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFEN---CCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKII 166 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSC---TTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred EEEEEEeCCCCCHHHHHHhccc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEc
Confidence 7999999999999999986542 23488999999999999999999999 9999999999999997664 9999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCC
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHE 673 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~ 673 (767)
|||.+....... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||..
T Consensus 167 DFG~a~~~~~~~-------~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~ 225 (676)
T 3qa8_A 167 DLGYAKELDQGE-------LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLP 225 (676)
T ss_dssp SCCCCCBTTSCC-------CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccccccccccc-------ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCc
Confidence 999998654321 12335689999999999999999999999999999999999999965
No 275
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=1.3e-36 Score=323.99 Aligned_cols=198 Identities=23% Similarity=0.354 Sum_probs=165.3
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-C-cEEEEEEeeccCCcchhhHHHHHHHHhcCCCCC------ceeEEeeeecCCc
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-G-ISVAVKVLDIESTGTWKSFFAECEALRNTRHRN------LVKLITSCSSLDF 525 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~-~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~~~~~~~~~~~ 525 (767)
.++|++.+.||+|+||.||+|.+.. + +.||+|+++.. ....+.+.+|+++++.++|++ ++.+++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~---- 92 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFN---- 92 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEE----
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeee----
Confidence 4689999999999999999999753 4 68999998632 234567788999999887655 888888743
Q ss_pred ccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeee-------
Q 004218 526 KNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILL------- 598 (767)
Q Consensus 526 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~------- 598 (767)
.....++||||+ ++++.+++.... ...+++.++..++.|++.||+|||++ +|+||||||+||++
T Consensus 93 -~~~~~~lv~e~~-~~~l~~~l~~~~----~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~ 163 (355)
T 2eu9_A 93 -FHGHMCIAFELL-GKNTFEFLKENN----FQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFET 163 (355)
T ss_dssp -ETTEEEEEEECC-CCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEE
T ss_pred -eCCeEEEEEecc-CCChHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccc
Confidence 455779999999 567777776543 23489999999999999999999999 99999999999999
Q ss_pred ------------CCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHh
Q 004218 599 ------------DEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFT 666 (767)
Q Consensus 599 ------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t 666 (767)
+.++.+||+|||.++..... .....||+.|+|||++.+..++.++||||+||++|||++
T Consensus 164 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 234 (355)
T 2eu9_A 164 LYNEHKSCEEKSVKNTSIRVADFGSATFDHEH---------HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYR 234 (355)
T ss_dssp EECCC-CCCEEEESCCCEEECCCTTCEETTSC---------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCcEEEeecCcccccccc---------ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHh
Confidence 56789999999999753221 123468999999999999999999999999999999999
Q ss_pred CCCCCCCc
Q 004218 667 GMSPTHES 674 (767)
Q Consensus 667 g~~p~~~~ 674 (767)
|+.||...
T Consensus 235 g~~pf~~~ 242 (355)
T 2eu9_A 235 GFTLFQTH 242 (355)
T ss_dssp SSCSCCCS
T ss_pred CCCCCCCC
Confidence 99999754
No 276
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=9.9e-37 Score=319.41 Aligned_cols=251 Identities=22% Similarity=0.289 Sum_probs=173.0
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCCc-ch-hhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTG-TW-KSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-~~-~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|.+. +|+.||||++...... .. +.+.++..+++.++||||+++++++. ....
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-----~~~~ 98 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFI-----TNTD 98 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEe-----cCCc
Confidence 467899999999999999999986 5899999999754322 22 33444555778889999999999964 4456
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHN-DCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
.++||||+ ++.+..+..... ..+++..+..++.|++.||+|||+ . +|+||||||+||+++.++.+||+||
T Consensus 99 ~~lv~e~~-~~~~~~l~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~df 169 (318)
T 2dyl_A 99 VFIAMELM-GTCAEKLKKRMQ-----GPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDF 169 (318)
T ss_dssp EEEEECCC-SEEHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEecc-CCcHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEEC
Confidence 79999999 445655554322 238999999999999999999998 6 8999999999999999999999999
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccC-----CCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhH
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL-----GEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKW 684 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~ 684 (767)
|.+....... ......||+.|+|||++. ...++.++||||+|+++|+|++|+.||.............
T Consensus 170 g~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~ 242 (318)
T 2dyl_A 170 GISGRLVDDK-------AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKV 242 (318)
T ss_dssp TTC---------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHH
T ss_pred CCchhccCCc-------cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHH
Confidence 9997654321 112345899999999984 4567899999999999999999999996532211111111
Q ss_pred hhhhcccch-hhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 685 VESNFPKNA-QQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 685 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.....+... ...+++. +.+++.+||+.||.+|||++|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~----------------------l~~li~~~l~~dp~~Rps~~~ll~h 284 (318)
T 2dyl_A 243 LQEEPPLLPGHMGFSGD----------------------FQSFVKDCLTKDHRKRPKYNKLLEH 284 (318)
T ss_dssp HHSCCCCCCSSSCCCHH----------------------HHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred hccCCCCCCccCCCCHH----------------------HHHHHHHHccCChhHCcCHHHHhhC
Confidence 111111100 0011111 2226678999999999999999874
No 277
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-35 Score=336.08 Aligned_cols=334 Identities=19% Similarity=0.199 Sum_probs=264.3
Q ss_pred CCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCC
Q 004218 26 LPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNST 105 (767)
Q Consensus 26 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 105 (767)
+.+++.|++++|.+....+..|.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+.+.+ +..+.+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQNVP 123 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC------HHHHcCCC
Confidence 567888888888888655666788888888888888888777778888888888888888877532 33467788
Q ss_pred CCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEc
Q 004218 106 RLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDL 185 (767)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 185 (767)
+|++|+|++|.+++..+..+..+++ |++|+|++|.+++..|..|.++++|++|+|++|.+++. .+..+++|+.|++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l 199 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 199 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCC-CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhc
Confidence 8888888888888444444577777 88888888888877787888888888888888888854 3556788888888
Q ss_pred cCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCC
Q 004218 186 AGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDG 265 (767)
Q Consensus 186 ~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~ 265 (767)
++|.+.+ +...++|+.|++++|.++...+. + .++|+.|+|++|.+++ +..+..+++|.. |++++|.+++
T Consensus 200 ~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~-L~Ls~N~l~~ 268 (597)
T 3oja_B 200 SYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVE-VDLSYNELEK 268 (597)
T ss_dssp CSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSE-EECCSSCCCE
T ss_pred ccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCE-EECCCCccCC
Confidence 8888774 33446788888888888744332 2 3678888888888885 467778888844 4888898888
Q ss_pred CCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccc
Q 004218 266 TLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQN 345 (767)
Q Consensus 266 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (767)
..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++. | +..
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~ 343 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 343 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhh
Confidence 888999999999999999999996 5677788999999999999999 6777889999999999999999854 3 677
Q ss_pred cccCceEeccCCcCcCcCCCCccccccccccccCCcCcccc
Q 004218 346 LRALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPKLCLH 386 (767)
Q Consensus 346 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~~c~~ 386 (767)
+++|+.|++++|++++... ...+..+....+.+++..|..
T Consensus 344 ~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp TCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCT
T ss_pred cCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCc
Confidence 8999999999999987642 233555666667888888874
No 278
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=3.1e-36 Score=309.03 Aligned_cols=231 Identities=13% Similarity=0.103 Sum_probs=178.5
Q ss_pred hcCCCCCCccccccceEEEEEEeCC-CcEEEEEEeeccCCc---chhhHHHHHHHHhcCCCCCceeEEeeeecCCcccce
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTG---TWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNME 529 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 529 (767)
.++|++.+.||+|+||.||+|.+.. ++.||||++...... ..+.+.+|+.++++++||||+++++++. ..+
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~~ 104 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVH-----TRA 104 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETT
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEE-----ECC
Confidence 3689999999999999999999865 899999999754332 3467899999999999999999999954 445
Q ss_pred eeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccc
Q 004218 530 FLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDF 609 (767)
Q Consensus 530 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Df 609 (767)
..|+||||++|++|.+++... ....++.+|+.|++.||+|||++ ||+||||||+||+++.++.+||+++
T Consensus 105 ~~~lv~e~~~g~~L~~~l~~~--------~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~ 173 (286)
T 3uqc_A 105 GGLVVAEWIRGGSLQEVADTS--------PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYP 173 (286)
T ss_dssp EEEEEEECCCEEEHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSC
T ss_pred cEEEEEEecCCCCHHHHHhcC--------CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEec
Confidence 679999999999999998532 45567899999999999999999 9999999999999999999999754
Q ss_pred cchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcc--hhhHhhh
Q 004218 610 GLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVS--LVKWVES 687 (767)
Q Consensus 610 g~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~--~~~~~~~ 687 (767)
| |++ .++.++|||||||++|||++|+.||......... .......
T Consensus 174 ~--------------------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~ 220 (286)
T 3uqc_A 174 A--------------------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAG 220 (286)
T ss_dssp C--------------------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTS
T ss_pred c--------------------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhcc
Confidence 3 333 3688999999999999999999999765432211 0011111
Q ss_pred hccc--chhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHHHh
Q 004218 688 NFPK--NAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRRLKNAQKILL 756 (767)
Q Consensus 688 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 756 (767)
..+. .....+++ .+.+++.+||+.||++| |+.|+++.|+.+.....
T Consensus 221 ~~~~~~~~~~~~~~----------------------~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~ 268 (286)
T 3uqc_A 221 QPIEPADIDRDIPF----------------------QISAVAARSVQGDGGIR-SASTLLNLMQQATAVAD 268 (286)
T ss_dssp CBCCHHHHCTTSCH----------------------HHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC---
T ss_pred CCCChhhcccCCCH----------------------HHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCC
Confidence 1110 00011111 12236778999999999 99999999999875443
No 279
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.4e-36 Score=344.63 Aligned_cols=247 Identities=23% Similarity=0.325 Sum_probs=191.4
Q ss_pred hcCCCCCCccccccceEEEEEEeC--CCcEEEEEEeeccC-CcchhhHHHHHHHHhcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR--EGISVAVKVLDIES-TGTWKSFFAECEALRNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++...+......
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 378999999999999999999975 58999999986432 234467889999999999999999999986544333344
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.|+||||+++++|.+++.. .+++.+++.|+.||+.||+|||++ +|+||||||+||+++.+ .+||+|||
T Consensus 159 ~~lv~E~~~g~~L~~~~~~--------~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG 226 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ--------KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLG 226 (681)
T ss_dssp EEEEEECCCCEECC----C--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCT
T ss_pred eEEEEEeCCCCcHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecc
Confidence 7999999999999987754 399999999999999999999999 99999999999999985 89999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcc
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFP 690 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 690 (767)
+++..... ....||+.|+|||++.+. ++.++|||||||++|+|++|..||........ +
T Consensus 227 ~a~~~~~~----------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~----------~ 285 (681)
T 2pzi_A 227 AVSRINSF----------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDGL----------P 285 (681)
T ss_dssp TCEETTCC----------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSSC----------C
T ss_pred cchhcccC----------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccccc----------c
Confidence 99765321 335689999999998765 48899999999999999999988765322111 0
Q ss_pred cchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCC-HHHHHHHHHHHHHH
Q 004218 691 KNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRID-IREALRRLKNAQKI 754 (767)
Q Consensus 691 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt-~~evl~~L~~~~~~ 754 (767)
.. ... .... ..+.+++.+||+.||++||+ ++++.+.+..+.+.
T Consensus 286 ~~-----~~~------------~~~~----~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~ 329 (681)
T 2pzi_A 286 ED-----DPV------------LKTY----DSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLRE 329 (681)
T ss_dssp TT-----CHH------------HHHC----HHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHHH
T ss_pred cc-----ccc------------cccC----HHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHHH
Confidence 00 000 0001 11223777999999999995 66677777766543
No 280
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.6e-34 Score=304.87 Aligned_cols=305 Identities=25% Similarity=0.382 Sum_probs=222.5
Q ss_pred CCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCC
Q 004218 25 KLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNS 104 (767)
Q Consensus 25 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 104 (767)
.+++|++|++++|.+. .++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.+... ..+.++
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--------~~~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--------SALQNL 109 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--------GGGTTC
T ss_pred hcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--------hHHcCC
Confidence 4667777777777777 3443 7777777778887777773 333 77777777887777776532 346777
Q ss_pred CCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEE
Q 004218 105 TRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLD 184 (767)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 184 (767)
++|++|++++|++++ ++. +..+++ |++|++++|..... +..+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 110 ~~L~~L~l~~n~i~~-~~~-~~~l~~-L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 110 TNLRELYLNEDNISD-ISP-LANLTK-MYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp TTCSEEECTTSCCCC-CGG-GTTCTT-CCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred CcCCEEECcCCcccC-chh-hccCCc-eeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 777788887777773 333 666666 78888887755433 3347777788888888887775333 67777888888
Q ss_pred ccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCC
Q 004218 185 LAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLD 264 (767)
Q Consensus 185 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~ 264 (767)
+++|.+.+..+ +..+++|+.|++++|.++...+ +..+++|++|++++|++++..+ +..++++.. +++++|.++
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~-L~l~~n~l~ 256 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTW-LEIGTNQIS 256 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE-EECCSSCCC
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCE-EECCCCccC
Confidence 88887774333 7777788888888887775433 6777788888888887774333 666777733 477777777
Q ss_pred CCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCcccc
Q 004218 265 GTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQ 344 (767)
Q Consensus 265 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (767)
+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..| +.
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 53 4577888899999999988864 458888999999999999988888888889999999999999886655 78
Q ss_pred ccccCceEeccCCcCc
Q 004218 345 NLRALRSLNLTFNNLE 360 (767)
Q Consensus 345 ~l~~L~~L~l~~N~l~ 360 (767)
.+++|+.|++++|+++
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 8899999999999876
No 281
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-34 Score=314.83 Aligned_cols=298 Identities=20% Similarity=0.216 Sum_probs=224.6
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEE
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMY 80 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 80 (767)
|++|++|+|++|+++ .+| .+ ..+++|++|++++|.+.+ +| ++.+++|++|++++|.+++. + ++.+++|++|
T Consensus 41 l~~L~~L~Ls~n~l~-~~~-~l-~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT-DMT-GI-EKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCC-CCT-TG-GGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred cCCCCEEEccCCCcc-cCh-hh-cccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 467899999999998 677 44 468999999999999995 44 88999999999999999853 3 8889999999
Q ss_pred eecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEE
Q 004218 81 NIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLN 160 (767)
Q Consensus 81 ~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 160 (767)
++++|++.+. .+.++++|++|++++|++++ ++ ++.+++ |++|++++|+..+.+ .+..+++|++|+
T Consensus 112 ~L~~N~l~~l---------~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~-L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 112 NCDTNKLTKL---------DVSQNPLLTYLNCARNTLTE-ID--VSHNTQ-LTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp ECCSSCCSCC---------CCTTCTTCCEEECTTSCCSC-CC--CTTCTT-CCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred ECCCCcCCee---------cCCCCCcCCEEECCCCccce-ec--cccCCc-CCEEECCCCCccccc--ccccCCcCCEEE
Confidence 9999988743 27788999999999999986 33 777777 999999999654444 478889999999
Q ss_pred CcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCC
Q 004218 161 LSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNG 240 (767)
Q Consensus 161 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (767)
+++|++++. + +..+++|++|++++|++++. .+..+++|+.|++++|++++ +| ++.+++|+.|++++|++++
T Consensus 177 ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 177 CSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred CCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 999999863 3 88889999999999999854 38888999999999999987 44 7888999999999999987
Q ss_pred CCChhhcccc-------cccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCc--------ccccCcccceee
Q 004218 241 NIPKEILSLS-------SLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPN--------SFKNCKSLEKLL 305 (767)
Q Consensus 241 ~~~~~~~~l~-------~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~--------~~~~l~~L~~L~ 305 (767)
..+..+.++. ++ +.+++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|+.|+
T Consensus 248 ~~~~~l~~L~~L~l~~n~L-~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 248 LDVSTLSKLTTLHCIQTDL-LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp CCCTTCTTCCEEECTTCCC-SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred cCHHHCCCCCEEeccCCCC-CEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 6555544444 22 233666666555554 45667777777777765544442 234445566666
Q ss_pred ccCccccCCCCchhhccCCceEEEcCCcccCC
Q 004218 306 MANNKFSGPIPNILAELKGLEVLDLSSNKLSG 337 (767)
Q Consensus 306 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (767)
+++|++++. + +..+++|+.|++++|++++
T Consensus 325 L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 325 LNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred CCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 666666653 2 5556666666666666653
No 282
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.6e-34 Score=303.74 Aligned_cols=304 Identities=22% Similarity=0.340 Sum_probs=263.2
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEE
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMY 80 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 80 (767)
+++|++|++++|.+. .+|. +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ + +.+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred cccccEEEEeCCccc-cchh--hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence 368999999999998 7875 4469999999999999995 554 9999999999999999984 3 469999999999
Q ss_pred eecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEE
Q 004218 81 NIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLN 160 (767)
Q Consensus 81 ~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 160 (767)
++++|.+... + .+..+++|++|++++|..... +..+..+++ |++|++++|++....+ +..+++|++|+
T Consensus 116 ~l~~n~i~~~-------~-~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~-L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 116 YLNEDNISDI-------S-PLANLTKMYSLNLGANHNLSD-LSPLSNMTG-LNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp ECTTSCCCCC-------G-GGTTCTTCCEEECTTCTTCCC-CGGGTTCTT-CCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred ECcCCcccCc-------h-hhccCCceeEEECCCCCCccc-ccchhhCCC-CcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 9999998743 2 278899999999999976644 445888888 9999999999985433 88999999999
Q ss_pred CcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCC
Q 004218 161 LSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNG 240 (767)
Q Consensus 161 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (767)
+++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|+++...+ +..+++|++|++++|.+++
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 99999996433 8899999999999999996544 8899999999999999986544 8899999999999999985
Q ss_pred CCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhh
Q 004218 241 NIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILA 320 (767)
Q Consensus 241 ~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 320 (767)
+ ..+..+++|. .+++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..| +.
T Consensus 258 -~-~~~~~l~~L~-~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 258 -I-NAVKDLTKLK-MLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp -C-GGGTTCTTCC-EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred -C-hhHhcCCCcC-EEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 3 4688888884 459999999965 468899999999999999998889999999999999999999997666 88
Q ss_pred ccCCceEEEcCCcccC
Q 004218 321 ELKGLEVLDLSSNKLS 336 (767)
Q Consensus 321 ~l~~L~~L~Ls~N~l~ 336 (767)
.+++|+.|++++|+|+
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 9999999999999986
No 283
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-34 Score=310.38 Aligned_cols=313 Identities=21% Similarity=0.210 Sum_probs=271.6
Q ss_pred cCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhh
Q 004218 48 HNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGN 127 (767)
Q Consensus 48 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 127 (767)
-.+++|++|++++|.++...+..+..+++|++|++++|.+... .+..+..+++|++|++++|++++..|..+.+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc------ChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 3578999999999999954445578899999999999998743 2336788999999999999999888888999
Q ss_pred hccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCcee
Q 004218 128 LSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQI 207 (767)
Q Consensus 128 l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 207 (767)
+++ |++|++++|+++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+++|+.|
T Consensus 116 l~~-L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L 191 (390)
T 3o6n_A 116 VPL-LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHA 191 (390)
T ss_dssp CTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEE
T ss_pred CCC-CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccccccccee
Confidence 998 99999999999966556679999999999999999988888899999999999999999854 36778999999
Q ss_pred eCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCC
Q 004218 208 DLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGL 287 (767)
Q Consensus 208 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 287 (767)
++++|.+++ +...++|+.|++++|.+... |... .+++ +.+++++|.+++. ..+..+++|+.|++++|.+
T Consensus 192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 192 NVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVEL-TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp ECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECCC--CSSC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ecccccccc-----cCCCCcceEEECCCCeeeec-cccc--cccc-cEEECCCCCCccc--HHHcCCCCccEEECCCCcC
Confidence 999999874 34557899999999999843 4322 3455 4559999999864 5789999999999999999
Q ss_pred CCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCCc
Q 004218 288 SGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREG 367 (767)
Q Consensus 288 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 367 (767)
++..|..|..+++|+.|++++|++++ ++..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++..+ ..
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~ 336 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LS 336 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CC
T ss_pred CCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--ch
Confidence 99889999999999999999999985 5666788999999999999998 67778899999999999999999875 44
Q ss_pred cccccccccccCCcCccc
Q 004218 368 IFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 368 ~~~~~~~~~l~~Np~~c~ 385 (767)
.++++..+++.+||+.|.
T Consensus 337 ~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TTCCCSEEECCSSCEEHH
T ss_pred hhccCCEEEcCCCCccch
Confidence 578899999999999884
No 284
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=4.9e-35 Score=303.19 Aligned_cols=231 Identities=23% Similarity=0.368 Sum_probs=175.0
Q ss_pred hcCCCCC-CccccccceEEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHH-hcCCCCCceeEEeeeecCCccccee
Q 004218 454 TGNFSHE-NLIGSGSFGSVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEAL-RNTRHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 454 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.++|.+. +.||+|+||.||+|.+. +++.||+|++.. ...+.+|+.++ +..+||||+++++++... ......
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 89 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC 89 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCce
Confidence 4567777 78999999999999975 589999999853 25677899888 566999999999986532 234667
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCC---CCceEEc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDE---DMTAKVG 607 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~---~~~~kl~ 607 (767)
.++||||+++|+|.+++.... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~ 162 (299)
T 3m2w_A 90 LLIVMECLDGGELFSRIQDRG----DQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLT 162 (299)
T ss_dssp EEEEECCCCSCBHHHHHHHCT----TCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEEC
T ss_pred EEEEEeecCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEe
Confidence 899999999999999998643 23599999999999999999999999 9999999999999997 7899999
Q ss_pred cccchhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCCcc--hhhHh
Q 004218 608 DFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGEVS--LVKWV 685 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~--~~~~~ 685 (767)
|||++... .+..++.++||||+||++|||++|+.||......... .....
T Consensus 163 Dfg~a~~~----------------------------~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~ 214 (299)
T 3m2w_A 163 DFGFAKET----------------------------TGEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRI 214 (299)
T ss_dssp CCTTCEEC----------------------------TTCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSS
T ss_pred cccccccc----------------------------ccccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHH
Confidence 99998532 1234678899999999999999999999654322110 00000
Q ss_pred -hhhc--ccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 004218 686 -ESNF--PKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPGGRIDIREALRR 747 (767)
Q Consensus 686 -~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 747 (767)
.... +......++ ..+.+++.+||+.||++|||++|++++
T Consensus 215 ~~~~~~~~~~~~~~~~----------------------~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 215 RMGQYEFPNPEWSEVS----------------------EEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp CTTCCSSCHHHHTTSC----------------------HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hhccccCCchhcccCC----------------------HHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 0000 000001111 112236778999999999999999985
No 285
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=1.3e-35 Score=321.21 Aligned_cols=251 Identities=17% Similarity=0.152 Sum_probs=178.2
Q ss_pred hcCCCCCCccccccceEEEEEEeC-CCcEEEEEEeeccCC---cchhhHHHHHHHHhcCCC-CCceeE---------Eee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST---GTWKSFFAECEALRNTRH-RNLVKL---------ITS 519 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h-~niv~~---------~~~ 519 (767)
..+|...+.||+|+||.||+|.+. +|+.||||++..... ...+.+.+|+.+++.++| ++.... .+.
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 345778889999999999999965 599999999863322 336788999999999977 321111 111
Q ss_pred eec------------CCcccceeeEEEEeecCCCChhhhhcccCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 004218 520 CSS------------LDFKNMEFLALVYEFLGNGSLGDWIHGERK-NEHGNGLNFLERLNIAIDIASALDYLHNDCEVPI 586 (767)
Q Consensus 520 ~~~------------~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i 586 (767)
+.. .........+++|+++ +++|.+++..... ......+++..++.++.|+++||+|||++ +|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 100 0000122356777765 6799999852211 01123488889999999999999999999 99
Q ss_pred EeecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCcccc----------CCCCCCCcccchh
Q 004218 587 VHCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYG----------LGEKPSTAGDVYS 656 (767)
Q Consensus 587 vH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~s 656 (767)
+||||||+||+++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++||||
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~---------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwS 302 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS---------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWT 302 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE---------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc---------cccCCC-CceeCchhhhccccccccccCcCCCchhhHHH
Confidence 99999999999999999999999998764332 233457 999999998 5666888999999
Q ss_pred hhHHHHHHHhCCCCCCCcccCCcchhhHhhhhcccchhhhccHHHHHhhhcchhhHHHHHHHHHHHHHHHhccccCCCCC
Q 004218 657 FGVMLLEIFTGMSPTHESFAGEVSLVKWVESNFPKNAQQVLDRELRQLMMSSESQTIQLHDCLITIIESVGLSCTTESPG 736 (767)
Q Consensus 657 lG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~ 736 (767)
|||++|||++|+.||......... .. .+... ..++ + .+.+++.+||+.||+
T Consensus 303 lGvil~elltg~~Pf~~~~~~~~~--~~---~~~~~--~~~~------------------~----~~~~li~~~l~~dP~ 353 (413)
T 3dzo_A 303 LGLAIYWIWCADLPNTDDAALGGS--EW---IFRSC--KNIP------------------Q----PVRALLEGFLRYPKE 353 (413)
T ss_dssp HHHHHHHHHHSSCCCCTTGGGSCS--GG---GGSSC--CCCC------------------H----HHHHHHHHHTCSSGG
T ss_pred HHHHHHHHHHCCCCCCCcchhhhH--HH---HHhhc--ccCC------------------H----HHHHHHHHHccCChh
Confidence 999999999999999664322110 00 01100 0011 1 122367789999999
Q ss_pred CCCCHHHHHHH
Q 004218 737 GRIDIREALRR 747 (767)
Q Consensus 737 ~Rpt~~evl~~ 747 (767)
+|||+.|++++
T Consensus 354 ~Rpt~~~~l~~ 364 (413)
T 3dzo_A 354 DRLLPLQAMET 364 (413)
T ss_dssp GSCCHHHHTTS
T ss_pred hCcCHHHHHhC
Confidence 99999888654
No 286
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.9e-34 Score=310.83 Aligned_cols=316 Identities=20% Similarity=0.210 Sum_probs=269.4
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEE
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMY 80 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 80 (767)
+++|++|+|++|+++ .+| +..+++|++|++++|.+.+ ++ ++++++|++|++++|.+++ ++ ++.+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 578999999999998 676 4469999999999999996 44 8999999999999999995 44 8999999999
Q ss_pred eecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEE
Q 004218 81 NIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLN 160 (767)
Q Consensus 81 ~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 160 (767)
++++|++++. .+.++++|++|++++|+..+.+ .+..+++ |++|++++|++++ +| +..+++|+.|+
T Consensus 133 ~l~~N~l~~l---------~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~-L~~L~ls~n~l~~-l~--l~~l~~L~~L~ 197 (457)
T 3bz5_A 133 NCARNTLTEI---------DVSHNTQLTELDCHLNKKITKL--DVTPQTQ-LTTLDCSFNKITE-LD--VSQNKLLNRLN 197 (457)
T ss_dssp ECTTSCCSCC---------CCTTCTTCCEEECTTCSCCCCC--CCTTCTT-CCEEECCSSCCCC-CC--CTTCTTCCEEE
T ss_pred ECCCCcccee---------ccccCCcCCEEECCCCCccccc--ccccCCc-CCEEECCCCccce-ec--cccCCCCCEEE
Confidence 9999998753 2778999999999999665555 4777887 9999999999996 45 88999999999
Q ss_pred CcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCcc-------ccccccc
Q 004218 161 LSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQ-------NLLSIDL 233 (767)
Q Consensus 161 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~l 233 (767)
+++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++..+..+..++ +|+.|++
T Consensus 198 l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 198 CDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDL 271 (457)
T ss_dssp CCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred CcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEEC
Confidence 999999965 48899999999999999996 56 88999999999999999987766666665 6678888
Q ss_pred cCcccCCCCChhhcccccccceeecccccCCCCCch--------hhcCCCceeEEEccCCCCCCCCCcccccCcccceee
Q 004218 234 SNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPE--------EIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLL 305 (767)
Q Consensus 234 ~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~--------~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 305 (767)
++|.+.+.+| +..+++|.. +++++|...+.+|. .++.+++|+.|++++|++++. .+..+++|+.|+
T Consensus 272 ~~n~~~~~~~--~~~l~~L~~-L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~ 345 (457)
T 3bz5_A 272 THNTQLIYFQ--AEGCRKIKE-LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLS 345 (457)
T ss_dssp TTCTTCCEEE--CTTCTTCCC-CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEE
T ss_pred CCCccCCccc--ccccccCCE-EECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEE
Confidence 8888777766 467788844 49999987766554 366778999999999999975 389999999999
Q ss_pred ccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCC
Q 004218 306 MANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPRE 366 (767)
Q Consensus 306 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 366 (767)
+++|++++ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 99999985 35677888999999875 46678899999999999988764
No 287
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=2.9e-36 Score=318.08 Aligned_cols=196 Identities=19% Similarity=0.223 Sum_probs=161.0
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCC--------cchhhHHHHHHHHhcCC---------CCCceeE
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIEST--------GTWKSFFAECEALRNTR---------HRNLVKL 516 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~---------h~niv~~ 516 (767)
.++|++.+.||+|+||.||+|++ +|+.||||++..... ...+.+.+|+++++.++ ||||+++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46789999999999999999998 589999999975432 23467889999998885 7777777
Q ss_pred EeeeecC-------------------------CcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHH
Q 004218 517 ITSCSSL-------------------------DFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDI 571 (767)
Q Consensus 517 ~~~~~~~-------------------------~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i 571 (767)
.+++... ++.....+++||||+++|++.+.+... .+++.++..++.|+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~-------~~~~~~~~~i~~qi 170 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK-------LSSLATAKSILHQL 170 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT-------CCCHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc-------CCCHHHHHHHHHHH
Confidence 7654211 011356789999999999877766432 28999999999999
Q ss_pred HHHHHHHH-hCCCCCeEeecCCCCCeeeCCCC--------------------ceEEccccchhhhhhhcCCCcccccccc
Q 004218 572 ASALDYLH-NDCEVPIVHCDLKPGNILLDEDM--------------------TAKVGDFGLARSLLERIGNQSSISSTHV 630 (767)
Q Consensus 572 ~~~l~~LH-~~~~~~ivH~Dlkp~NIl~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~ 630 (767)
+.||+||| +. +|+||||||+|||++.++ .+||+|||+|+.... ..
T Consensus 171 ~~aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~-----------~~ 236 (336)
T 2vuw_A 171 TASLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD-----------GI 236 (336)
T ss_dssp HHHHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET-----------TE
T ss_pred HHHHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC-----------Cc
Confidence 99999999 88 999999999999999887 899999999986532 13
Q ss_pred ccCCCCccCccccCCCCCCCcccchhhhHH-HHHHHhCCCCCC
Q 004218 631 LKGSIGYIPPEYGLGEKPSTAGDVYSFGVM-LLEIFTGMSPTH 672 (767)
Q Consensus 631 ~~gt~~y~aPE~~~~~~~~~~~Dv~slG~i-l~el~tg~~p~~ 672 (767)
..||+.|+|||++.+.. +.++||||+|++ .+++++|..||.
T Consensus 237 ~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~ 278 (336)
T 2vuw_A 237 VVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS 278 (336)
T ss_dssp EECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred EEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCc
Confidence 46899999999998766 889999998777 778888999873
No 288
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.3e-34 Score=323.60 Aligned_cols=312 Identities=21% Similarity=0.210 Sum_probs=273.4
Q ss_pred CCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhh
Q 004218 49 NLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNL 128 (767)
Q Consensus 49 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 128 (767)
.+.+++.|++++|.++...+..+..+++|++|+|++|.+.+. .+..+..+++|++|+|++|.+++..|..++++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC------ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 468999999999999965556688899999999999998753 23478899999999999999998888888999
Q ss_pred ccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceee
Q 004218 129 SNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQID 208 (767)
Q Consensus 129 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 208 (767)
++ |++|+|++|+++...+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+.+. + +..+++|+.|+
T Consensus 123 ~~-L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~ 198 (597)
T 3oja_B 123 PL-LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHAN 198 (597)
T ss_dssp TT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEE
T ss_pred CC-CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhh
Confidence 98 99999999999977667789999999999999999998888999999999999999999954 3 67789999999
Q ss_pred CCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCC
Q 004218 209 LSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLS 288 (767)
Q Consensus 209 L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 288 (767)
+++|.+++ +...++|+.|++++|.+... +..+. ++| +.+++++|.+++ +..++.+++|+.|+|++|.++
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~~--~~L-~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGPVN--VEL-TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSCC--SCC-CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred cccCcccc-----ccCCchhheeeccCCccccc-ccccC--CCC-CEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 99999874 44567899999999999843 33222 345 555999999986 478999999999999999999
Q ss_pred CCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCCcc
Q 004218 289 GNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREGI 368 (767)
Q Consensus 289 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 368 (767)
+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++.+ ...
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~ 343 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LST 343 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCT
T ss_pred CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhh
Confidence 9999999999999999999999995 5667788999999999999999 67888999999999999999999875 345
Q ss_pred ccccccccccCCcCccc
Q 004218 369 FRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 369 ~~~~~~~~l~~Np~~c~ 385 (767)
++.+..+++.+|||.|.
T Consensus 344 ~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred cCCCCEEEeeCCCCCCh
Confidence 78899999999999985
No 289
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.2e-33 Score=293.03 Aligned_cols=295 Identities=19% Similarity=0.241 Sum_probs=141.2
Q ss_pred CccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEee
Q 004218 3 SLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNI 82 (767)
Q Consensus 3 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 82 (767)
++++++++++.++ .+|..+. ++|++|++++|++.+..+..|.++++|++|+|++|.+++..|..|+.+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3555566666555 5555443 35555666666655444445556666666666666655444555555555555555
Q ss_pred cCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECc
Q 004218 83 GFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLS 162 (767)
Q Consensus 83 ~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 162 (767)
++|+++. +|..+. ++ |++|++++|++++..+..|.++++|++|+++
T Consensus 108 s~n~l~~-------------------------------l~~~~~--~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 108 SKNQLKE-------------------------------LPEKMP--KT-LQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CSSCCSB-------------------------------CCSSCC--TT-CCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCcCCc-------------------------------cChhhc--cc-ccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 5555543 332222 12 4455555555544444444555555555555
Q ss_pred CCcCcc--cCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCC
Q 004218 163 YNSISG--EILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNG 240 (767)
Q Consensus 163 ~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (767)
+|.+.. ..+..+..+++|++|++++|.+. .+|..+. ++|++|++++|++++..+..|..+++|+.|++++|.+++
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 555432 33444555555555555555555 2333322 455555555555555445555555555555555555543
Q ss_pred CCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhh
Q 004218 241 NIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILA 320 (767)
Q Consensus 241 ~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 320 (767)
..+..+..+++|. .+++++|.++ .+|..+..+++|+.|++++|.+++..+..|..... ..
T Consensus 231 ~~~~~~~~l~~L~-~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~------------------~~ 290 (330)
T 1xku_A 231 VDNGSLANTPHLR-ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY------------------NT 290 (330)
T ss_dssp ECTTTGGGSTTCC-EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC------------------CT
T ss_pred eChhhccCCCCCC-EEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc------------------cc
Confidence 2222222222221 1122222222 22333344444555555555554444333322100 01
Q ss_pred ccCCceEEEcCCcccCC--CCCccccccccCceEeccCCc
Q 004218 321 ELKGLEVLDLSSNKLSG--SIPSDLQNLRALRSLNLTFNN 358 (767)
Q Consensus 321 ~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 358 (767)
..+.|+.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 12456666666666642 445566666667777766663
No 290
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.5e-33 Score=294.88 Aligned_cols=304 Identities=17% Similarity=0.219 Sum_probs=216.5
Q ss_pred CCeeeecCCCccccCCC-----CCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCc
Q 004218 11 SNQLWGEIPYDVGDKLP-----NLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFN 85 (767)
Q Consensus 11 ~n~l~~~ip~~~~~~l~-----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 85 (767)
.+.+. ++|..+....+ +++.++++++.+. .+|..+. ++|++|+|++|.+++..|..|+.+++|++|++++|
T Consensus 13 ~~~l~-~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 88 (332)
T 2ft3_A 13 IPDLD-SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88 (332)
T ss_dssp -------------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCccc-cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC
Confidence 34444 66665543322 6888888888888 6776553 68888888888888766778888888888888888
Q ss_pred cccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCc
Q 004218 86 KIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNS 165 (767)
Q Consensus 86 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 165 (767)
++.. ..+..+.++++|++|++++|+++ .+|..+. ++ |++|++++|+++...+..|.++++|++|++++|.
T Consensus 89 ~l~~------~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 89 KISK------IHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SS-LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CCCE------ECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TT-CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred ccCc------cCHhHhhCcCCCCEEECCCCcCC-ccCcccc--cc-CCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 8763 23556788888888888888888 6666555 44 9999999999987777779999999999999999
Q ss_pred Ccc--cCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCC
Q 004218 166 ISG--EILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIP 243 (767)
Q Consensus 166 i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 243 (767)
++. ..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+++..+..|..+++|+.|++++|++++..+
T Consensus 159 l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 159 LENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred cccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 963 667778888 99999999999984 565554 789999999999998888899999999999999998885444
Q ss_pred hhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhc--
Q 004218 244 KEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAE-- 321 (767)
Q Consensus 244 ~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-- 321 (767)
..+.. +++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|..
T Consensus 235 ~~~~~-------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 235 GSLSF-------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288 (332)
T ss_dssp TGGGG-------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred hHhhC-------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence 44444 445555555555555 44445555556666666666555544444433
Q ss_pred ----cCCceEEEcCCcccC--CCCCccccccccCceEeccCCc
Q 004218 322 ----LKGLEVLDLSSNKLS--GSIPSDLQNLRALRSLNLTFNN 358 (767)
Q Consensus 322 ----l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~l~~N~ 358 (767)
.++|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356777888888776 5666777778888888887764
No 291
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.5e-33 Score=290.47 Aligned_cols=218 Identities=22% Similarity=0.275 Sum_probs=101.1
Q ss_pred ccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeec
Q 004218 4 LVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIG 83 (767)
Q Consensus 4 L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 83 (767)
++++++++++++ .+|..++ ++|++|++++|.+.+..|..|.++++|++|+|++|.+++..|..|+.+++|++|+++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 444555555554 4444432 244555555555544444445555555555555555544444445555555555555
Q ss_pred CccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCccc--ccCCccccCCCCCCEEEC
Q 004218 84 FNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFY--GKIPTSIGRLRSLTLLNL 161 (767)
Q Consensus 84 ~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~l 161 (767)
+|++...+.. +. ++|++|++++|++++..+..+..+++ |++|++++|.++ +..+..+..+ +|++|++
T Consensus 111 ~n~l~~l~~~-------~~--~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 111 KNHLVEIPPN-------LP--SSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp SSCCCSCCSS-------CC--TTCCEEECCSSCCCCCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CCcCCccCcc-------cc--ccCCEEECCCCccCccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 5544432211 11 34455555555554333333444444 555555555443 1334444444 4555555
Q ss_pred cCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccC
Q 004218 162 SYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 162 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (767)
++|.+++ +|..+. ++|++|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++
T Consensus 180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp CSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred cCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 5555442 222222 34555555555554444444445555555555555554444444444455555544444443
No 292
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-34 Score=299.35 Aligned_cols=253 Identities=34% Similarity=0.577 Sum_probs=171.2
Q ss_pred CCCCEEECcCCccee--ecCchhhhhccccCeEEccC-CcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCC
Q 004218 105 TRLNFLAFDGNQFEG--EIPESIGNLSNVLSKLYMGG-NRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQ 181 (767)
Q Consensus 105 ~~L~~L~l~~n~l~~--~~~~~~~~l~~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 181 (767)
.+++.|+|++|++++ .+|..+.+++. |++|++++ |++.+.+|..|.++++|++|+|++|.+++..|..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356666666666665 56666666655 66666663 556555566666666666666666666555555566666666
Q ss_pred EEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCcc-ccccccccCcccCCCCChhhcccccccceeeccc
Q 004218 182 SLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQ-NLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSK 260 (767)
Q Consensus 182 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~ 260 (767)
+|+|++|.+.+.+|..|..+++|++|+|++|++++..|..+..++ +|+.|++++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~--------------------- 187 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT--------------------- 187 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---------------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---------------------
Confidence 666666666555555566666666666666666555555555555 5555555555555
Q ss_pred ccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCC
Q 004218 261 NFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIP 340 (767)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (767)
+..|..++.++ |+.|++++|.+++..|..|..+++|+.|++++|.+++..+. +..+++|++|+|++|++++.+|
T Consensus 188 ----~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 188 ----GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp ----EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC
T ss_pred ----ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC
Confidence 44455555554 77777777777777777777777777777777777755554 6777888888888888887888
Q ss_pred ccccccccCceEeccCCcCcCcCCCCccccccccccccCCcCccc
Q 004218 341 SDLQNLRALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 341 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~~c~ 385 (767)
..+..+++|+.|++++|++++.+|....++++..+++.+||+.|+
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred hHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 888888888888888888887777777778888888888888887
No 293
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.3e-33 Score=303.54 Aligned_cols=330 Identities=23% Similarity=0.293 Sum_probs=179.9
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCC-------------CEEEcccccCcccCC
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNI-------------QIIRMAHNLLEGTVP 68 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-------------~~L~l~~n~i~~~~~ 68 (767)
++|++|++++|++ |++|.+++ .+++|++|++++|++.+.+|..++++++| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 5799999999999 59999886 59999999999999999999999988864 889999998884 44
Q ss_pred ccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCc
Q 004218 69 PGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPT 148 (767)
Q Consensus 69 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~ 148 (767)
.. .++|++|++++|.+.+.+.. .++|++|++++|++++ +|... ++ |++|++++|++++ +|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~----------~~~L~~L~l~~n~l~~-l~~~~---~~-L~~L~L~~n~l~~-lp- 147 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPEL----------PQSLKSLLVDNNNLKA-LSDLP---PL-LEYLGVSNNQLEK-LP- 147 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCC----------CTTCCEEECCSSCCSC-CCSCC---TT-CCEEECCSSCCSS-CC-
T ss_pred CC---cCCCCEEEccCCcCCccccc----------cCCCcEEECCCCccCc-ccCCC---CC-CCEEECcCCCCCC-Cc-
Confidence 42 36788888888887754321 2456666666666552 22211 22 5666666666653 44
Q ss_pred cccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCcccc
Q 004218 149 SIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNL 228 (767)
Q Consensus 149 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 228 (767)
.|+++++|++|++++|++++ +|.. .++|++|++++|++.+ +| .+.++++|++|++++|++++ .|... ++|
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L 217 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSL 217 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTC
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---Ccc
Confidence 35556666666666665553 2322 2355555555555553 33 35555555555555555543 22211 345
Q ss_pred ccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCccc-------------
Q 004218 229 LSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSF------------- 295 (767)
Q Consensus 229 ~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~------------- 295 (767)
+.|++++|.+. .+| .+..++++. .+++++|++++ +|. .+++|+.|++++|.+++ +|..+
T Consensus 218 ~~L~l~~n~l~-~lp-~~~~l~~L~-~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 218 ESIVAGNNILE-ELP-ELQNLPFLT-TIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIF 289 (454)
T ss_dssp CEEECCSSCCS-SCC-CCTTCTTCC-EEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCC
T ss_pred cEEECcCCcCC-ccc-ccCCCCCCC-EEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcccCcCCEEECcCCcc
Confidence 55555555554 344 244444442 22555555543 221 12344444444444443 22211
Q ss_pred ----ccCcccceeeccCccccCCCCchhhcc-CCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCCcccc
Q 004218 296 ----KNCKSLEKLLMANNKFSGPIPNILAEL-KGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREGIFR 370 (767)
Q Consensus 296 ----~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 370 (767)
.-.++|+.|++++|.+++. ..+ ++|+.|++++|++++ +|.. +++|+.|++++|.+++++. .+.
T Consensus 290 ~~l~~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~ 357 (454)
T 1jl5_A 290 SGLSELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE---LPQ 357 (454)
T ss_dssp SEESCCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCT
T ss_pred CcccCcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc---hhh
Confidence 0013455555555555431 122 478888888888885 5543 5788889999998887554 467
Q ss_pred ccccccccCCcCcc
Q 004218 371 HTSMVHLEGNPKLC 384 (767)
Q Consensus 371 ~~~~~~l~~Np~~c 384 (767)
++..+++.+|+..+
T Consensus 358 ~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 358 NLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSCCSS
T ss_pred hccEEECCCCCCCc
Confidence 78888888887655
No 294
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-33 Score=294.26 Aligned_cols=255 Identities=32% Similarity=0.504 Sum_probs=226.1
Q ss_pred CCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcC-CcceeecCchhhhhccccCeEEccCCcccccCCccccCC
Q 004218 75 PFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDG-NQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRL 153 (767)
Q Consensus 75 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l 153 (767)
.+++.|+|++|.+.+. ..++..+.++++|++|++++ |++.+.+|..+.++++ |++|++++|++++.+|..|.++
T Consensus 50 ~~l~~L~L~~~~l~~~----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT-CSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCC----cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCC-CCEEECcCCeeCCcCCHHHhCC
Confidence 5799999999998631 13567889999999999995 9999999999999998 9999999999999999999999
Q ss_pred CCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCC-CCceeeCCCCcCCCCCcccccCcccccccc
Q 004218 154 RSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLK-KLNQIDLSGNELASEIPTSFGNFQNLLSID 232 (767)
Q Consensus 154 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 232 (767)
++|++|+|++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|++|+|++|++++..|..|..++ |+.|+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 9999999999999999999999999999999999999999999999998 999999999999988999998887 88888
Q ss_pred ccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCcccc
Q 004218 233 LSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFS 312 (767)
Q Consensus 233 l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 312 (767)
+++|.+++. .|..+..+++|+.|+|++|.+++..|. +..+++|++|++++|.++
T Consensus 204 Ls~N~l~~~-------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 204 LSRNMLEGD-------------------------ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CCSSEEEEC-------------------------CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE
T ss_pred CcCCcccCc-------------------------CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc
Confidence 888877643 344566677888888888888866554 788899999999999999
Q ss_pred CCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCc-CcCc
Q 004218 313 GPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNN-LEGV 362 (767)
Q Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~ 362 (767)
+.+|..+..+++|+.|+|++|++++.+|.. ..+++|+.+++++|+ +.+.
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 889999999999999999999999888876 889999999999998 5553
No 295
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-31 Score=293.25 Aligned_cols=322 Identities=25% Similarity=0.343 Sum_probs=195.9
Q ss_pred CccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEee
Q 004218 3 SLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNI 82 (767)
Q Consensus 3 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 82 (767)
++++|++++|+++ .+|.. .++|++|++++|.+.+ +|.. .++|++|++++|.+++ ++.. .++|++|++
T Consensus 72 ~l~~L~l~~~~l~-~lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L 138 (454)
T 1jl5_A 72 QAHELELNNLGLS-SLPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGV 138 (454)
T ss_dssp TCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEEC
T ss_pred CCCEEEecCCccc-cCCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEEC
Confidence 3567777777776 56642 3567777777777774 5543 3677777777777763 3321 157777777
Q ss_pred cCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECc
Q 004218 83 GFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLS 162 (767)
Q Consensus 83 ~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 162 (767)
++|++.+. + .+.++++|++|++++|++++ +|..+ .+ |++|++++|++++ +| .+.++++|++|+++
T Consensus 139 ~~n~l~~l-------p-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~-L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 139 SNNQLEKL-------P-ELQNSSFLKIIDVDNNSLKK-LPDLP---PS-LEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp CSSCCSSC-------C-CCTTCTTCCEEECCSSCCSC-CCCCC---TT-CCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred cCCCCCCC-------c-ccCCCCCCCEEECCCCcCcc-cCCCc---cc-ccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 77777532 2 46777778888888887773 55433 23 7778888887775 45 47777788888888
Q ss_pred CCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCC
Q 004218 163 YNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNI 242 (767)
Q Consensus 163 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 242 (767)
+|.+++ +|.. .++|++|++++|.+. .+| .+..+++|++|++++|++++ +|.. +++|+.|++++|++++ +
T Consensus 204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l 272 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-L 272 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-C
T ss_pred CCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-c
Confidence 887774 3322 247777788877777 555 37777778888888887764 3332 3677777777777774 4
Q ss_pred ChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccC-cccceeeccCccccCCCCchhhc
Q 004218 243 PKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNC-KSLEKLLMANNKFSGPIPNILAE 321 (767)
Q Consensus 243 ~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~ 321 (767)
|..+ +++ +.+++++|.+++.. . ..++|+.|++++|.+++. + .+ ++|+.|++++|++++ +|..
T Consensus 273 ~~~~---~~L-~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~--- 335 (454)
T 1jl5_A 273 PELP---QSL-TFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL--- 335 (454)
T ss_dssp CCCC---TTC-CEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---
T ss_pred Cccc---CcC-CEEECcCCccCccc-C---cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---
Confidence 4432 334 34477777776521 1 124667777777766642 1 22 477777777777775 4433
Q ss_pred cCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCc--CCCC-ccc-------------cccccccccCCcCcc
Q 004218 322 LKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGV--VPRE-GIF-------------RHTSMVHLEGNPKLC 384 (767)
Q Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~-~~~-------------~~~~~~~l~~Np~~c 384 (767)
+++|+.|++++|+++ .+|. .+++|++|++++|++++. .|.. ..+ +++..+++.+|+...
T Consensus 336 ~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 336 PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 466777777777777 3554 357777777777777773 2322 222 455666677776543
No 296
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.7e-32 Score=285.00 Aligned_cols=287 Identities=22% Similarity=0.311 Sum_probs=223.5
Q ss_pred CCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccc
Q 004218 52 NIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNV 131 (767)
Q Consensus 52 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~ 131 (767)
+|+.++++++.++ .+|..+. ++|++|++++|++++.+ ...+.++++|++|++++|++++..|..+..+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~- 101 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIK------DGDFKNLKNLHTLILINNKISKISPGAFAPLVK- 101 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBC------TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT-
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeC------hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC-
Confidence 5677777777776 5555443 56777777777776432 224677788888888888888777889999988
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCcccc--ccCcCcccCCCCceeeC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISG--SIPNTLGNLKKLNQIDL 209 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L 209 (767)
|++|++++|+++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.. ..+..|..+++|++|++
T Consensus 102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 999999999998 5566554 799999999999998888889999999999999999963 67788999999999999
Q ss_pred CCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCC
Q 004218 210 SGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSG 289 (767)
Q Consensus 210 ~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 289 (767)
++|.++. +|..+. ++|++|++++|++++ ..+..+..+++|+.|++++|.+++
T Consensus 179 ~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 179 ADTNITT-IPQGLP--PSLTELHLDGNKITK-------------------------VDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CSSCCCS-CCSSCC--TTCSEEECTTSCCCE-------------------------ECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCCcccc-CCcccc--ccCCEEECCCCcCCc-------------------------cCHHHhcCCCCCCEEECCCCcCce
Confidence 9999985 454443 778888888877763 334456667788888888888887
Q ss_pred CCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccc------cccCceEeccCCcCcCcC
Q 004218 290 NLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQN------LRALRSLNLTFNNLEGVV 363 (767)
Q Consensus 290 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~~~ 363 (767)
..+..+..+++|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..|.. .+.|+.|++++|++....
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 77778888888888888888888 67777888889999999999998766666643 378999999999997532
Q ss_pred --CCC-ccccccccccccCC
Q 004218 364 --PRE-GIFRHTSMVHLEGN 380 (767)
Q Consensus 364 --~~~-~~~~~~~~~~l~~N 380 (767)
|.. .....+..+++.+|
T Consensus 310 i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGGTTCCCGGGEEC---
T ss_pred cCccccccccceeEEEeccc
Confidence 222 33456677777776
No 297
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=5.3e-36 Score=331.13 Aligned_cols=358 Identities=15% Similarity=0.120 Sum_probs=286.6
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccc----cCCccccCCCCCCEEEcccccCcccCCccCC-CCC
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTG----KIPGSLHNLTNIQIIRMAHNLLEGTVPPGLG-NLP 75 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~l~ 75 (767)
+++|++|||++|++++.....++..+++|++|++++|++.+ .++..+..+++|++|+|++|.+++..+..+. .++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35789999999999844334446679999999999999985 4577889999999999999999865443332 244
Q ss_pred ----CCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhh-----ccccCeEEccCCccccc-
Q 004218 76 ----FLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNL-----SNVLSKLYMGGNRFYGK- 145 (767)
Q Consensus 76 ----~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~~L~~L~l~~n~i~~~- 145 (767)
+|++|+|++|++...+. ..++..+.++++|++|++++|.+++..+..+... .+ |++|++++|+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~-L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGC--GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR-LEKLQLEYCSLSAAS 158 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGH--HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC-CCEEECTTSCCBGGG
T ss_pred hCCCceeEEEccCCCCCHHHH--HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc-ceEEECCCCCCCHHH
Confidence 79999999999864211 1457788999999999999999987666666542 34 99999999999864
Q ss_pred ---CCccccCCCCCCEEECcCCcCcccCccccC-----CCCCCCEEEccCCccccc----cCcCcccCCCCceeeCCCCc
Q 004218 146 ---IPTSIGRLRSLTLLNLSYNSISGEILTEIG-----QLQELQSLDLAGNQISGS----IPNTLGNLKKLNQIDLSGNE 213 (767)
Q Consensus 146 ---~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~N~ 213 (767)
++..+..+++|++|++++|.++...+..+. ..++|++|++++|.++.. ++..+..+++|++|+|++|+
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 366677889999999999999865555544 367999999999999853 56778889999999999999
Q ss_pred CCCCC-----cccccCccccccccccCcccCCC----CChhhcccccccceeecccccCCCCCchhhcC-----CCceeE
Q 004218 214 LASEI-----PTSFGNFQNLLSIDLSNNKLNGN----IPKEILSLSSLTTIVNLSKNFLDGTLPEEIGM-----LGNVVT 279 (767)
Q Consensus 214 l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~-----l~~L~~ 279 (767)
++... +..+..+++|++|++++|.++.. ++..+..+++|. .+++++|.+++..+..+.. .++|+.
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK-ELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC-EEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc-eEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 87532 22334689999999999999854 567777788885 4599999997654444433 369999
Q ss_pred EEccCCCCCCC----CCcccccCcccceeeccCccccCCCCchhhc-----cCCceEEEcCCcccCC----CCCcccccc
Q 004218 280 IDLSANGLSGN----LPNSFKNCKSLEKLLMANNKFSGPIPNILAE-----LKGLEVLDLSSNKLSG----SIPSDLQNL 346 (767)
Q Consensus 280 L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l 346 (767)
|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|+.|+|++|.+++ .+|..+..+
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 99999999865 4566778899999999999998765555554 6799999999999986 778888899
Q ss_pred ccCceEeccCCcCcCc
Q 004218 347 RALRSLNLTFNNLEGV 362 (767)
Q Consensus 347 ~~L~~L~l~~N~l~~~ 362 (767)
++|+.|++++|++++.
T Consensus 398 ~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 398 HSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCCEEECCSSSCCHH
T ss_pred CCccEEECCCCCCCHH
Confidence 9999999999999864
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2e-33 Score=310.41 Aligned_cols=356 Identities=16% Similarity=0.160 Sum_probs=274.1
Q ss_pred CCCccEEeCCCCeeee----cCCCccccCCCCCcEEEccCCcccccCCccc-cCCC----CCCEEEcccccCcc----cC
Q 004218 1 MTSLVYLGLASNQLWG----EIPYDVGDKLPNLLGFNFCFNKFTGKIPGSL-HNLT----NIQIIRMAHNLLEG----TV 67 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~----~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~----~L~~L~l~~n~i~~----~~ 67 (767)
+++|++|+|++|++++ .+|..+ ..+++|++|+|++|.+.+..+..+ ..++ +|++|+|++|.+++ .+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 4689999999999984 244444 358999999999999986544333 3455 79999999999985 45
Q ss_pred CccCCCCCCCcEEeecCccccCCCCCCcccccc-ccCCCCCCEEECcCCcceeec----CchhhhhccccCeEEccCCcc
Q 004218 68 PPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITS-LTNSTRLNFLAFDGNQFEGEI----PESIGNLSNVLSKLYMGGNRF 142 (767)
Q Consensus 68 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~~L~~L~l~~n~i 142 (767)
+..+..+++|++|++++|.+...+.. .+... ....++|++|++++|++++.. +..+..+++ |++|++++|.+
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~i 182 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQ--LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD-FKELTVSNNDI 182 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHH--HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTT-CCEEECCSSBC
T ss_pred HHHHccCCceeEEECCCCcCchHHHH--HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCC-CCEEECcCCCc
Confidence 88899999999999999998632111 12222 223578999999999998644 555666677 99999999999
Q ss_pred cccCCcccc-----CCCCCCEEECcCCcCccc----CccccCCCCCCCEEEccCCcccccc-----CcCcccCCCCceee
Q 004218 143 YGKIPTSIG-----RLRSLTLLNLSYNSISGE----ILTEIGQLQELQSLDLAGNQISGSI-----PNTLGNLKKLNQID 208 (767)
Q Consensus 143 ~~~~~~~l~-----~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~ 208 (767)
+...+..+. .+++|++|++++|.++.. ++..+..+++|++|++++|.+.+.. +..+..+++|++|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 865555554 367999999999999964 4667788999999999999998543 22334689999999
Q ss_pred CCCCcCCCC----CcccccCccccccccccCcccCCCCChhhccc-----ccccceeecccccCCCC----CchhhcCCC
Q 004218 209 LSGNELASE----IPTSFGNFQNLLSIDLSNNKLNGNIPKEILSL-----SSLTTIVNLSKNFLDGT----LPEEIGMLG 275 (767)
Q Consensus 209 L~~N~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~l~~~l~l~~n~l~~~----~~~~~~~l~ 275 (767)
+++|.++.. ++..+..+++|++|++++|.+++..+..+... +++ +.+++++|.+++. ++..+..++
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 999999854 46677789999999999999975555444433 466 5559999999865 466777889
Q ss_pred ceeEEEccCCCCCCCCCccccc-----CcccceeeccCccccC----CCCchhhccCCceEEEcCCcccCCCCCcccc--
Q 004218 276 NVVTIDLSANGLSGNLPNSFKN-----CKSLEKLLMANNKFSG----PIPNILAELKGLEVLDLSSNKLSGSIPSDLQ-- 344 (767)
Q Consensus 276 ~L~~L~ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-- 344 (767)
+|+.|++++|.+++..+..+.. .++|+.|++++|.+++ .++..+..+++|++|+|++|++++.....+.
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~ 421 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHH
Confidence 9999999999998665555543 6799999999999986 6788889999999999999999854222222
Q ss_pred ---ccccCceEeccCCcCcC
Q 004218 345 ---NLRALRSLNLTFNNLEG 361 (767)
Q Consensus 345 ---~l~~L~~L~l~~N~l~~ 361 (767)
...+|+.|++.++.+..
T Consensus 422 l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 422 VRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HTSTTCCCCEEECTTCCCCH
T ss_pred hccCCcchhheeecccccCH
Confidence 13467888887776654
No 299
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7e-30 Score=265.42 Aligned_cols=254 Identities=24% Similarity=0.296 Sum_probs=159.6
Q ss_pred CCCCEEECcCCcceeecCchhhhhccccCeEEccCCccccc--CCccccCCCCCCEEECcCCcCcccCccccCCCCCCCE
Q 004218 105 TRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGK--IPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQS 182 (767)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 182 (767)
++|++|++++|+++...+..+.++++ |++|++++|+++.. .+..+..+++|++|+|++|.+. ..+..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhcccc-CCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 35555555555555222223445554 55555555555421 1344445555555555555555 23444555555555
Q ss_pred EEccCCccccccC-cCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccc
Q 004218 183 LDLAGNQISGSIP-NTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKN 261 (767)
Q Consensus 183 L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n 261 (767)
|++++|++.+..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------- 163 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---------------------- 163 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG----------------------
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc----------------------
Confidence 5555555553332 34555555555555555555444555555555555555555544
Q ss_pred cCCC-CCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCC
Q 004218 262 FLDG-TLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIP 340 (767)
Q Consensus 262 ~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (767)
+ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..|
T Consensus 164 ---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 164 ---ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp ---GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ---cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 3 345667778888888888888887778888888888888888888887777778888889999999999888888
Q ss_pred ccccccc-cCceEeccCCcCcCcCCCCc---cccccccccccCCcCccc
Q 004218 341 SDLQNLR-ALRSLNLTFNNLEGVVPREG---IFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 341 ~~~~~l~-~L~~L~l~~N~l~~~~~~~~---~~~~~~~~~l~~Np~~c~ 385 (767)
..+..++ +|+.|++++|++++..+... .+...+.+....+...|.
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~ 289 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 289 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEE
T ss_pred HHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccC
Confidence 8888885 88999999998887654321 123333444555655664
No 300
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.5e-30 Score=272.51 Aligned_cols=278 Identities=14% Similarity=0.130 Sum_probs=177.3
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCE
Q 004218 30 LGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNF 109 (767)
Q Consensus 30 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~ 109 (767)
...++++|+++ .+|..+. ++|++|++++|.+++..+..++.+++|++|++++|++.+. .+..+.++++|++
T Consensus 34 ~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~ 104 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI------EEDSFSSLGSLEH 104 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCE
T ss_pred eEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc------CHhhcCCCCCCCE
Confidence 34555555555 4444333 3555555555555544444555555555555555555421 1223555566666
Q ss_pred EECcCCcceeecCchhhhhccccCeEEccCCcccccCC-ccccCCCCCCEEECcCC-cCcccCccccCCCCCCCEEEccC
Q 004218 110 LAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIP-TSIGRLRSLTLLNLSYN-SISGEILTEIGQLQELQSLDLAG 187 (767)
Q Consensus 110 L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~ 187 (767)
|++++|++++..+..+..+++ |++|++++|+++...+ ..+.++++|++|++++| .+....+..|..+++|++|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTT-CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCcc-CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 666666666333333666666 7777777777774333 36777888888888887 46666667788888888888888
Q ss_pred CccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCC
Q 004218 188 NQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTL 267 (767)
Q Consensus 188 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~ 267 (767)
|++.+..|..|..+++|++|++++|+++...+..+..+++|+.|++++|.+++..+..+..
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------------- 244 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------------- 244 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------------------
Confidence 8888777788888888888888888886544444456788888888888887543322211
Q ss_pred chhhcCCCceeEEEccCCCCCC----CCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCC
Q 004218 268 PEEIGMLGNVVTIDLSANGLSG----NLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSI 339 (767)
Q Consensus 268 ~~~~~~l~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (767)
....+.++.++++++.+++ .+|..+..+++|+.|++++|+++...+..|..+++|+.|+|++|++.+..
T Consensus 245 ---~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 245 ---GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ---ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 1123345566666666654 34566777888888888888888444444678888888888888887543
No 301
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.2e-29 Score=263.78 Aligned_cols=282 Identities=18% Similarity=0.219 Sum_probs=175.4
Q ss_pred cEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCccc--CCccCCCCCCCcEEee
Q 004218 5 VYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGT--VPPGLGNLPFLKMYNI 82 (767)
Q Consensus 5 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l 82 (767)
+.+++++++++ .+|..+. ++|++|+|++|++....+..|.++++|++|+|++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46777777777 7777654 4677888888887744444567777888888887777632 2445555677777777
Q ss_pred cCccccCCCCCCccccccccCCCCCCEEECcCCcceeecC-chhhhhccccCeEEccCCcccccCCccccCCCCCCEEEC
Q 004218 83 GFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIP-ESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNL 161 (767)
Q Consensus 83 ~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 161 (767)
++|.+. .++..+..+++|++|++++|++++..+ ..+..+++ |++|++++|++.+..+..+..+++|++|++
T Consensus 86 s~n~i~-------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 86 SFNGVI-------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CSCSEE-------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT-CCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred CCCccc-------cChhhcCCCCCCCEEECCCCcccccccchhhhhccC-CCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 777665 344455666666666666666664333 34555555 666666666666555666666666666666
Q ss_pred cCCcCcc-cCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCC
Q 004218 162 SYNSISG-EILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNG 240 (767)
Q Consensus 162 ~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (767)
++|.+++ ..|..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 6666654 345556666666666666666665555566666666666666666655545455555666666666655553
Q ss_pred CCChhhcccccccceeecccccCCCCCchhhcCC-CceeEEEccCCCCCCCCC--cccccCcccceeeccCccccCCCCc
Q 004218 241 NIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGML-GNVVTIDLSANGLSGNLP--NSFKNCKSLEKLLMANNKFSGPIPN 317 (767)
Q Consensus 241 ~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~ 317 (767)
..|..+..+ ++|+.|+|++|.++.... .....+...+.+....+.+....|.
T Consensus 238 -------------------------~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 238 -------------------------SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp -------------------------CSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred -------------------------cCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 444445555 377888888888764321 1233445556666667777766776
Q ss_pred hhhccC
Q 004218 318 ILAELK 323 (767)
Q Consensus 318 ~~~~l~ 323 (767)
.+.+.+
T Consensus 293 ~~~g~~ 298 (306)
T 2z66_A 293 DKQGMP 298 (306)
T ss_dssp GGTTCB
T ss_pred hhCCce
Confidence 665543
No 302
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=269.14 Aligned_cols=256 Identities=21% Similarity=0.265 Sum_probs=144.9
Q ss_pred CCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEcc
Q 004218 107 LNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLA 186 (767)
Q Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (767)
|++|++++|++++..+..+.++++ |++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccCHHHhccCCC-CCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 334444444444333333444444 4444444444444444444444444444444444443333334444444444444
Q ss_pred CCccccccC-cCcccCCCCceeeCCCC-cCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCC
Q 004218 187 GNQISGSIP-NTLGNLKKLNQIDLSGN-ELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLD 264 (767)
Q Consensus 187 ~n~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~ 264 (767)
+|++....+ ..|..+++|++|++++| .++...+..|..+++|++|++++|++.+..|..+..+++|.. +++++|.+.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~-L~l~~n~l~ 211 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH-LILHMKQHI 211 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE-EEEECSCST
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe-ecCCCCccc
Confidence 444442222 24444445555555444 233333444444555555555555554444444444444422 255555554
Q ss_pred CCCchhhcCCCceeEEEccCCCCCCCCCcccc---cCcccceeeccCccccC----CCCchhhccCCceEEEcCCcccCC
Q 004218 265 GTLPEEIGMLGNVVTIDLSANGLSGNLPNSFK---NCKSLEKLLMANNKFSG----PIPNILAELKGLEVLDLSSNKLSG 337 (767)
Q Consensus 265 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (767)
...+..+..+++|+.|++++|.+++..+..+. ....++.++++++.+.+ .+|..+..+++|+.|+|++|+++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 33333445578889999999988876554443 35667778888877765 36777889999999999999999
Q ss_pred CCCcc-ccccccCceEeccCCcCcCcCCC
Q 004218 338 SIPSD-LQNLRALRSLNLTFNNLEGVVPR 365 (767)
Q Consensus 338 ~~~~~-~~~l~~L~~L~l~~N~l~~~~~~ 365 (767)
.+|.. +..+++|+.|++++|++++.+|.
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 45554 68999999999999999987653
No 303
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=9.9e-29 Score=258.34 Aligned_cols=231 Identities=20% Similarity=0.226 Sum_probs=147.4
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEe
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYN 81 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 81 (767)
+.+++|+|++|+++ .+|..++. +++|++|+|++|.+. .+|..++++++|++|+|++|.++ .+|..++.+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45677777777776 77777664 777777777777777 67777777777777777777777 6676777777777777
Q ss_pred ecCccccCCCCCCc---cccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCE
Q 004218 82 IGFNKIVGSGDEGL---SFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTL 158 (767)
Q Consensus 82 l~~n~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 158 (767)
+++|++.+.-+..+ .....+.++++|++|++++|+++ .+|..+..+++ |++|++++|++++ +|..+..+++|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT-CCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC-CCEEEccCCCCCc-CchhhccCCCCCE
Confidence 77765443211100 00111233666666666666666 56666666665 6666666666663 4445666666666
Q ss_pred EECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCccc
Q 004218 159 LNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKL 238 (767)
Q Consensus 159 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (767)
|+|++|.+.+..|..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|++.+.+|..++++++|+.+++..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666665554
Q ss_pred C
Q 004218 239 N 239 (767)
Q Consensus 239 ~ 239 (767)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 4
No 304
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.6e-28 Score=269.59 Aligned_cols=228 Identities=25% Similarity=0.256 Sum_probs=112.8
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
|++|+|++|++++..+..|.++++|++|+|++|.|+++.+..|.++++|++|+|++|+++...+..|..+++|++|+|++
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence 55555555555544455555555555555555555544445555555555555555555544444455555555555555
Q ss_pred CcCCCCCcccccCccccccccccCcccCCCCC-hhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCC
Q 004218 212 NELASEIPTSFGNFQNLLSIDLSNNKLNGNIP-KEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGN 290 (767)
Q Consensus 212 N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 290 (767)
|+++...+..|..+++|+.|++++|...+.++ ..|.++++| +.|++++|.+++. | .+..+++|+.|+|++|.+++.
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCccccc-c-cccccccccEEECcCCcCccc
Confidence 55554444445555555555555422211111 122222222 1112333322211 1 234445555555555555555
Q ss_pred CCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCc
Q 004218 291 LPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGV 362 (767)
Q Consensus 291 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 362 (767)
.|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+.
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 555555555555555555555555555555555555555555555544444555555555555555555443
No 305
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=268.11 Aligned_cols=248 Identities=23% Similarity=0.288 Sum_probs=137.2
Q ss_pred CCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEcc
Q 004218 107 LNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLA 186 (767)
Q Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (767)
...++++++.++ .+|..+. ..++.|+|++|+++...+..|.++++|++|+|++|.|+++.+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345566666665 4555443 226666666666666666666666677777777776666666666666677777777
Q ss_pred CCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCC
Q 004218 187 GNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGT 266 (767)
Q Consensus 187 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~ 266 (767)
+|+++...+..|..+++|++|+|++|+++...+..|..+++|+.|++++|...+.++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----------------------- 177 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS----------------------- 177 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-----------------------
Confidence 776665555566666667777777776665555566666666666666643221111
Q ss_pred CchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCcccccc
Q 004218 267 LPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNL 346 (767)
Q Consensus 267 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (767)
+..|..+++|+.|+|++|.++. +| .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+
T Consensus 178 -~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 178 -EGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp -TTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred -cchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 1223344444444444444442 22 24444455555555555544444445555555555555555554444445555
Q ss_pred ccCceEeccCCcCcCcCCCC-ccccccccccccCCcCcc
Q 004218 347 RALRSLNLTFNNLEGVVPRE-GIFRHTSMVHLEGNPKLC 384 (767)
Q Consensus 347 ~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~l~~Np~~c 384 (767)
++|+.|+|++|++++.++.. ..++++..+++.+|||.|
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 55555555555555444332 223444455555555555
No 306
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.1e-28 Score=253.45 Aligned_cols=226 Identities=19% Similarity=0.213 Sum_probs=200.8
Q ss_pred cEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecC
Q 004218 5 VYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGF 84 (767)
Q Consensus 5 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 84 (767)
++++.++++++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|+|++|.+++..|..++.+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 67999999998 899765 45899999999999987778899999999999999999988788999999999999999
Q ss_pred cc-ccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcC
Q 004218 85 NK-IVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSY 163 (767)
Q Consensus 85 n~-l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 163 (767)
|. +... .+..+..+++|++|++++|++++..|..+..+++ |++|++++|++++..+..|..+++|++|+|++
T Consensus 90 n~~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 90 NAQLRSV------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162 (285)
T ss_dssp CTTCCCC------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcccc------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC-CCEEECCCCcccccCHhHhccCCCccEEECCC
Confidence 97 6543 2456788899999999999999777888888888 99999999999977777799999999999999
Q ss_pred CcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCC
Q 004218 164 NSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGN 241 (767)
Q Consensus 164 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (767)
|++++..+..|..+++|++|++++|.+.+..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+...
T Consensus 163 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 999977777799999999999999999988889999999999999999999987777889999999999999998743
No 307
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-30 Score=288.12 Aligned_cols=214 Identities=21% Similarity=0.192 Sum_probs=143.9
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
|++|+|++|++++..|..|..+++|++|+|++|.+++..+ +..+++|++|+|++|.|++.. ..++|++|++++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~ 108 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC
Confidence 7777777777776666677777777777777777765443 667777777777777776432 226677777777
Q ss_pred CcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhc-CCCceeEEEccCCCCCCC
Q 004218 212 NELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIG-MLGNVVTIDLSANGLSGN 290 (767)
Q Consensus 212 N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~ 290 (767)
|.+++..+. .+++|+.|+|++|.+++..|..+..+++|. .|++++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEE-EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCC-EEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 777655443 346677777777777765566666666663 336666666665666554 577777777777777755
Q ss_pred CCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCc
Q 004218 291 LPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLE 360 (767)
Q Consensus 291 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 360 (767)
.+ +..+++|+.|+|++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 22 33477777777777777753 3347777777777777777773 5666777777777777777776
No 308
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2e-28 Score=256.04 Aligned_cols=236 Identities=19% Similarity=0.272 Sum_probs=154.0
Q ss_pred CCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEE
Q 004218 105 TRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLD 184 (767)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 184 (767)
++++.|+|++|+++ .+|..++.+++ |++|+|++|+++ .+|..++++++|++|+|++|.++ .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTT-CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCC-CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 44555555555555 45555555554 555555555555 45555555555555555555555 4455555555555555
Q ss_pred ccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCC
Q 004218 185 LAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLD 264 (767)
Q Consensus 185 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~ 264 (767)
|++|++.+.+|..+... ..+..|.++++|++|+|++|+++ .+|..+..+++|. .+++++|.++
T Consensus 157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~-~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK-SLKIRNSPLS 219 (328)
T ss_dssp EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCC-EEEEESSCCC
T ss_pred CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCC-EEEccCCCCC
Confidence 55555444445443320 00011223555555566555555 5555555555553 3356666665
Q ss_pred CCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCcccc
Q 004218 265 GTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQ 344 (767)
Q Consensus 265 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (767)
+ +|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+|++|++.+.+|..+.
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 3 444577788888899999888888888888899999999999888888888889999999999999998889999999
Q ss_pred ccccCceEeccCCcCcCc
Q 004218 345 NLRALRSLNLTFNNLEGV 362 (767)
Q Consensus 345 ~l~~L~~L~l~~N~l~~~ 362 (767)
.+++|+.+++..|.+...
T Consensus 299 ~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 299 QLPANCIILVPPHLQAQL 316 (328)
T ss_dssp GSCTTCEEECCGGGSCC-
T ss_pred hccCceEEeCCHHHHHHH
Confidence 999999998887776654
No 309
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=9.3e-28 Score=269.72 Aligned_cols=268 Identities=22% Similarity=0.267 Sum_probs=152.2
Q ss_pred CccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEee
Q 004218 3 SLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNI 82 (767)
Q Consensus 3 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 82 (767)
.+++|++++|+++ .+|..++ ++|++|+|++|.++ .+|. .+++|++|+|++|.++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 3667777777777 7777664 57777777777777 4554 4677777777777776 4554 4567777777
Q ss_pred cCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECc
Q 004218 83 GFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLS 162 (767)
Q Consensus 83 ~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 162 (767)
++|+++..+ . .+++|+.|++++|+++ .+|..+ ++ |++|++++|++++ +|. .+.+|+.|+++
T Consensus 109 s~N~l~~l~-------~---~l~~L~~L~L~~N~l~-~lp~~l---~~-L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 109 FSNPLTHLP-------A---LPSGLCKLWIFGNQLT-SLPVLP---PG-LQELSVSDNQLAS-LPA---LPSELCKLWAY 169 (622)
T ss_dssp CSCCCCCCC-------C---CCTTCCEEECCSSCCS-CCCCCC---TT-CCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred cCCcCCCCC-------C---CCCCcCEEECCCCCCC-cCCCCC---CC-CCEEECcCCcCCC-cCC---ccCCCCEEECC
Confidence 777765432 1 3456666666666666 344322 33 6666666666553 232 23455556666
Q ss_pred CCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCC
Q 004218 163 YNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNI 242 (767)
Q Consensus 163 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 242 (767)
+|.+++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++. +|.. +++|+.|+|++|+++
T Consensus 170 ~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~--- 234 (622)
T 3g06_A 170 NNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT--- 234 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS---
T ss_pred CCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccC---
Confidence 665553 22 334555555555555552 2321 2455555555555542 2221 244444444444444
Q ss_pred ChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhcc
Q 004218 243 PKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAEL 322 (767)
Q Consensus 243 ~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 322 (767)
+ +| ..+++|+.|+|++|.|++ +|. .+++|+.|+|++|+|+ .+|..+..+
T Consensus 235 ----------------------~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 235 ----------------------S-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp ----------------------C-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred ----------------------c-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 1 11 223556666666666663 333 4456666666666666 455666666
Q ss_pred CCceEEEcCCcccCCCCCccccccc
Q 004218 323 KGLEVLDLSSNKLSGSIPSDLQNLR 347 (767)
Q Consensus 323 ~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (767)
++|+.|+|++|++++..|..+..++
T Consensus 284 ~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cccCEEEecCCCCCCcCHHHHHhcc
Confidence 6666666666666665555554443
No 310
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.6e-28 Score=267.97 Aligned_cols=248 Identities=24% Similarity=0.256 Sum_probs=223.7
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
...+++++++++ .+|..+. ++|++|+|++|.|+++.+..|.++++|++|+|++|+|.+..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 567888888888 5676654 6999999999999998899999999999999999999988889999999999999999
Q ss_pred CcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeeccc-ccCCCCCchhhcCCCceeEEEccCCCCCCC
Q 004218 212 NELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSK-NFLDGTLPEEIGMLGNVVTIDLSANGLSGN 290 (767)
Q Consensus 212 N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 290 (767)
|+++...+..|..+++|++|+|++|++....+..|..+++|.. +++++ |.+....+..|..+++|+.|+|++|++++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR-LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE-EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE-EeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9999888888999999999999999999777778999999955 49998 555555556799999999999999999954
Q ss_pred CCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCC-ccc
Q 004218 291 LPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPRE-GIF 369 (767)
Q Consensus 291 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~ 369 (767)
| .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++.++.. ..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4 5889999999999999999999999999999999999999999999999999999999999999999887765 457
Q ss_pred cccccccccCCcCccc
Q 004218 370 RHTSMVHLEGNPKLCL 385 (767)
Q Consensus 370 ~~~~~~~l~~Np~~c~ 385 (767)
+++..+++.+|||.|.
T Consensus 290 ~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cCCCEEEccCCCcCCC
Confidence 8889999999999995
No 311
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.5e-28 Score=252.41 Aligned_cols=248 Identities=24% Similarity=0.286 Sum_probs=159.8
Q ss_pred CEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccC
Q 004218 108 NFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAG 187 (767)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (767)
+.++++++.++ .+|..+. ++ |++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~-l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGIP--AA-SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTCC--TT-CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCCC--CC-ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 57788888887 5565432 23 88888888888877667788888888888888888877777788888888888888
Q ss_pred Cc-cccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCC
Q 004218 188 NQ-ISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGT 266 (767)
Q Consensus 188 n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~ 266 (767)
|. +....|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------------- 148 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT--------------------- 148 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH---------------------
Confidence 86 77565777788888888888888887777777777888888888777776433333
Q ss_pred CchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCcccccc
Q 004218 267 LPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNL 346 (767)
Q Consensus 267 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (767)
++.+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+
T Consensus 149 ----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 149 ----FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp ----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred ----hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 4444555555555555554444445555555555555555555555555555555556666555554444445555
Q ss_pred ccCceEeccCCcCcCcCCCCccccccccccccCCcCcc
Q 004218 347 RALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPKLC 384 (767)
Q Consensus 347 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~~c 384 (767)
++|+.|++++|++.+..+.......+.......|...|
T Consensus 225 ~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c 262 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262 (285)
T ss_dssp TTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBE
T ss_pred cccCEEeccCCCccCCCCcHHHHHHHHhcccccCcccc
Confidence 55666666666555544333222223333334444444
No 312
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=266.43 Aligned_cols=223 Identities=24% Similarity=0.278 Sum_probs=187.4
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
...+++++++++ .+|..+. ++++.|+|++|+|+.+.+..|.++++|++|+|++|+|.+..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 667888888887 5676665 6889999999999887788888899999999999998877778888889999999999
Q ss_pred CcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCC-CCCCC
Q 004218 212 NELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSAN-GLSGN 290 (767)
Q Consensus 212 N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~ 290 (767)
|+++...+..|..+++|++|+|++|++.. ..+..|..+++|+.|+|++| .+...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIES-------------------------IPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCE-------------------------ECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccc-------------------------cCHHHhhhCcccCEeCCCCCCCccee
Confidence 98887777778888888888888887762 23345667888999999994 56656
Q ss_pred CCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCC-ccc
Q 004218 291 LPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPRE-GIF 369 (767)
Q Consensus 291 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~ 369 (767)
.+..|.++++|+.|++++|+++. +| .+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred CcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 66689999999999999999994 45 4889999999999999999988999999999999999999999987765 456
Q ss_pred cccccccccCCcCcc
Q 004218 370 RHTSMVHLEGNPKLC 384 (767)
Q Consensus 370 ~~~~~~~l~~Np~~c 384 (767)
+++..+++.+|....
T Consensus 255 ~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 255 QSLVEINLAHNNLTL 269 (440)
T ss_dssp TTCCEEECTTSCCCC
T ss_pred CCCCEEECCCCCCCc
Confidence 888899999997543
No 313
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=8.4e-30 Score=265.74 Aligned_cols=257 Identities=19% Similarity=0.198 Sum_probs=128.8
Q ss_pred ccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeec
Q 004218 4 LVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIG 83 (767)
Q Consensus 4 L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 83 (767)
++.++++.+.+. .++..++..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 455666666665 5555555556667777777777775555666777777777777777664333 6666666666666
Q ss_pred CccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcC
Q 004218 84 FNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSY 163 (767)
Q Consensus 84 ~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 163 (767)
+|++.+. ...++|++|++++|++++..+. . +++|++|++++
T Consensus 89 ~n~l~~l-----------~~~~~L~~L~l~~n~l~~~~~~-------------------------~---~~~L~~L~l~~ 129 (317)
T 3o53_A 89 NNYVQEL-----------LVGPSIETLHAANNNISRVSCS-------------------------R---GQGKKNIYLAN 129 (317)
T ss_dssp SSEEEEE-----------EECTTCCEEECCSSCCSEEEEC-------------------------C---CSSCEEEECCS
T ss_pred CCccccc-----------cCCCCcCEEECCCCccCCcCcc-------------------------c---cCCCCEEECCC
Confidence 6665421 1224455555555555433222 1 34455555555
Q ss_pred CcCcccCccccCCCCCCCEEEccCCccccccCcCc-ccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCC
Q 004218 164 NSISGEILTEIGQLQELQSLDLAGNQISGSIPNTL-GNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNI 242 (767)
Q Consensus 164 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 242 (767)
|++++..+..+..+++|++|+|++|.+.+..+..+ ..+++|++|+|++|.+++. + ....+++|+.|+|++|++++ +
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l 206 (317)
T 3o53_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-M 206 (317)
T ss_dssp SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-E
T ss_pred CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-c
Confidence 55554444445555555555555555554444433 2445555555555555432 1 12234555555555555541 1
Q ss_pred ChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCC-CCCCcccccCcccceeecc
Q 004218 243 PKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLS-GNLPNSFKNCKSLEKLLMA 307 (767)
Q Consensus 243 ~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~ 307 (767)
|..+..+++|. .+++++|.++ .+|..+..+++|+.|++++|.+. +..|..+..+++|+.|+++
T Consensus 207 ~~~~~~l~~L~-~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 207 GPEFQSAAGVT-WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CGGGGGGTTCS-EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhcccCccc-EEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 21222222221 1122222222 12223344445555555555554 3444445555555555554
No 314
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.8e-29 Score=260.13 Aligned_cols=248 Identities=20% Similarity=0.227 Sum_probs=171.3
Q ss_pred CCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCccc-ccCCcccc-------CCCCCCEEECcCCcCcccCcccc
Q 004218 103 NSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFY-GKIPTSIG-------RLRSLTLLNLSYNSISGEILTEI 174 (767)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~-~~~~~~l~-------~l~~L~~L~l~~n~i~~~~~~~~ 174 (767)
..++|+.|++++|.+ .+|..+... |+.|++++|++. ..+|..+. ++++|++|+|++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345566666666666 556555543 556666666663 33444443 56677777777777766666654
Q ss_pred --CCCCCCCEEEccCCccccccCcCcccC-----CCCceeeCCCCcCCCCCcccccCccccccccccCcccCCC--CChh
Q 004218 175 --GQLQELQSLDLAGNQISGSIPNTLGNL-----KKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGN--IPKE 245 (767)
Q Consensus 175 --~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~ 245 (767)
..+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..+..|+.+++|++|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 6677777777777777654 6666655 6777777777777666666677777777777777766543 2223
Q ss_pred h--cccccccceeecccccCCCC---CchhhcCCCceeEEEccCCCCCCCCC-cccccCcccceeeccCccccCCCCchh
Q 004218 246 I--LSLSSLTTIVNLSKNFLDGT---LPEEIGMLGNVVTIDLSANGLSGNLP-NSFKNCKSLEKLLMANNKFSGPIPNIL 319 (767)
Q Consensus 246 ~--~~l~~l~~~l~l~~n~l~~~---~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~ 319 (767)
+ ..+++|. .+++++|.+++. ....+..+++|+.|++++|.+++..| ..+..+++|+.|++++|.|+ .+|..+
T Consensus 195 ~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 195 LCPLKFPTLQ-VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp SCTTSCTTCC-EEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHhccCCCCC-EEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 3 5566663 336777776632 22345678899999999999987664 56677899999999999998 666666
Q ss_pred hccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCc
Q 004218 320 AELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGV 362 (767)
Q Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 362 (767)
. ++|+.|+|++|+|++. |. +..+++|++|++++|++++.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 5 7899999999999865 65 88899999999999998863
No 315
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1e-26 Score=261.28 Aligned_cols=262 Identities=26% Similarity=0.341 Sum_probs=183.9
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCC
Q 004218 28 NLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRL 107 (767)
Q Consensus 28 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L 107 (767)
++++|++++|.++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|++++.+ . .+++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp-------~---~l~~L 103 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLP-------V---LPPGL 103 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCC-------C---CCTTC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCC-------C---CCCCC
Confidence 5778888888888 6776555 78888888888887 5554 4577888888888776432 1 45677
Q ss_pred CEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccC
Q 004218 108 NFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAG 187 (767)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (767)
++|++++|+++ .+|. .+.+ |+.|++++|+++. +|.. +++|++|+|++|.+++ +|. .+++|+.|++++
T Consensus 104 ~~L~Ls~N~l~-~l~~---~l~~-L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 104 LELSIFSNPLT-HLPA---LPSG-LCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYN 170 (622)
T ss_dssp CEEEECSCCCC-CCCC---CCTT-CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CEEECcCCcCC-CCCC---CCCC-cCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCC
Confidence 77777777777 3444 2333 7777777777763 4432 3667777777776663 222 245666667777
Q ss_pred CccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCC
Q 004218 188 NQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTL 267 (767)
Q Consensus 188 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~ 267 (767)
|.+++ +| ..+++|+.|+|++|.+++ +|.. +++|+.|++++|.++ .+
T Consensus 171 N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~--------------------------~l 216 (622)
T 3g06_A 171 NQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT--------------------------SL 216 (622)
T ss_dssp SCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS--------------------------SC
T ss_pred CCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc--------------------------cc
Confidence 66663 34 334666666666666654 2322 355666666666555 12
Q ss_pred chhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccc
Q 004218 268 PEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLR 347 (767)
Q Consensus 268 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (767)
|. .+++|+.|+|++|.+++ +| ..+++|+.|++++|.|++ +|. .+++|+.|+|++|+|+ .+|..+..++
T Consensus 217 ~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 217 PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 21 23689999999999996 44 556899999999999994 554 6788999999999999 7799999999
Q ss_pred cCceEeccCCcCcCcCCC
Q 004218 348 ALRSLNLTFNNLEGVVPR 365 (767)
Q Consensus 348 ~L~~L~l~~N~l~~~~~~ 365 (767)
+|+.|+|++|++++..+.
T Consensus 285 ~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TTCEEECCSCCCCHHHHH
T ss_pred ccCEEEecCCCCCCcCHH
Confidence 999999999999987654
No 316
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.95 E-value=2e-29 Score=281.69 Aligned_cols=184 Identities=18% Similarity=0.063 Sum_probs=126.8
Q ss_pred cccccceEEEEEE-eCCCcEEEEEEeeccC----------CcchhhHHHHHHHHhcC-CCCCceeEEeeeecCCccccee
Q 004218 463 IGSGSFGSVYKGY-LREGISVAVKVLDIES----------TGTWKSFFAECEALRNT-RHRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 463 lg~G~~g~V~~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 530 (767)
.+.|++|.+..++ .-.|+.||+|++.... ....+++.+|+++|+++ .|+||++++++ ++++..
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~-----~ed~~~ 316 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAH-----GENAQS 316 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEE-----EECSSE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEE-----EEECCE
Confidence 4455666555544 2238889999996542 12345689999999999 79999999999 556778
Q ss_pred eEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 531 LALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
.||||||++|++|.+++..... ++.. +|+.||+.||+|+|++ |||||||||+|||++++|.+||+|||
T Consensus 317 ~yLVMEyv~G~~L~d~i~~~~~------l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFG 384 (569)
T 4azs_A 317 GWLVMEKLPGRLLSDMLAAGEE------IDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFG 384 (569)
T ss_dssp EEEEEECCCSEEHHHHHHTTCC------CCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCT
T ss_pred EEEEEecCCCCcHHHHHHhCCC------CCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecc
Confidence 8999999999999999976542 5554 5899999999999999 99999999999999999999999999
Q ss_pred chhhhhhhcCCCccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCC
Q 004218 611 LARSLLERIGNQSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSP 670 (767)
Q Consensus 611 ~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p 670 (767)
+|+...... ......+||+.|+|||++.+ .+..++|+||+|++.+++.++..|
T Consensus 385 lAr~~~~~~------~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 385 SIVTTPQDC------SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp TEESCC---------CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred cCeeCCCCC------ccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 998654321 12245679999999999876 467789999999998877665444
No 317
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.6e-28 Score=255.36 Aligned_cols=205 Identities=18% Similarity=0.172 Sum_probs=148.4
Q ss_pred ccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCc-ccCCccCC-------CCCCCcEEeecCccccCCCCCC
Q 004218 23 GDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLE-GTVPPGLG-------NLPFLKMYNIGFNKIVGSGDEG 94 (767)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~ 94 (767)
+...++|++|++++|.+ .+|..+... |+.|+|++|.+. ..+|..+. .+++|++|+|++|++.+.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---- 110 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT---- 110 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC----
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch----
Confidence 34566788888888888 577666554 888888988884 34555554 678899999999888742
Q ss_pred ccccccc--cCCCCCCEEECcCCcceeecCchhhhh-----ccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCc
Q 004218 95 LSFITSL--TNSTRLNFLAFDGNQFEGEIPESIGNL-----SNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSIS 167 (767)
Q Consensus 95 ~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~ 167 (767)
.+..+ ..+++|++|+|++|++++. |..+..+ ++ |++|++++|++.+..+..|+++++|++|+|++|++.
T Consensus 111 --~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 111 --APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPG-LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp --CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTT-CCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred --hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCC-CcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 23333 7788899999999998866 8888887 55 888888888888777788888888888888888876
Q ss_pred cc--Ccccc--CCCCCCCEEEccCCcccc---ccCcCcccCCCCceeeCCCCcCCCCCc-ccccCccccccccccCcccC
Q 004218 168 GE--ILTEI--GQLQELQSLDLAGNQISG---SIPNTLGNLKKLNQIDLSGNELASEIP-TSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 168 ~~--~~~~~--~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 239 (767)
+. .+..+ ..+++|++|+|++|++++ .....+..+++|++|+|++|++++..| ..+..+++|++|+|++|+++
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 53 23333 777888888888888772 112334566777777777777776553 34455666666666666665
No 318
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.8e-29 Score=259.40 Aligned_cols=268 Identities=19% Similarity=0.193 Sum_probs=199.3
Q ss_pred CcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCC
Q 004218 29 LLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLN 108 (767)
Q Consensus 29 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~ 108 (767)
++.++++.+.+...+...+..+++|++|+|++|.+++..|..|+.+++|++|+|++|++.
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------- 71 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-------------------- 71 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE--------------------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC--------------------
Confidence 344556666666444455556667777777777776555556666666666666666553
Q ss_pred EEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCC
Q 004218 109 FLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGN 188 (767)
Q Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 188 (767)
+..+ +..+++ |++|++++|++++.. ..++|++|++++|.+++..+. .+++|++|++++|
T Consensus 72 ----------~~~~--~~~l~~-L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N 130 (317)
T 3o53_A 72 ----------ETLD--LESLST-LRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANN 130 (317)
T ss_dssp ----------EEEE--ETTCTT-CCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSS
T ss_pred ----------cchh--hhhcCC-CCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCC
Confidence 2222 444444 666666666655322 227888999999988865443 3688999999999
Q ss_pred ccccccCcCcccCCCCceeeCCCCcCCCCCcccc-cCccccccccccCcccCCCCChhhcccccccceeecccccCCCCC
Q 004218 189 QISGSIPNTLGNLKKLNQIDLSGNELASEIPTSF-GNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTL 267 (767)
Q Consensus 189 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~ 267 (767)
++++..+..+..+++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++. +
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~------------------------ 185 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K------------------------ 185 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E------------------------
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c------------------------
Confidence 9998888899999999999999999998777776 4789999999999998721 1
Q ss_pred chhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccC-CCCCcccccc
Q 004218 268 PEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLS-GSIPSDLQNL 346 (767)
Q Consensus 268 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 346 (767)
....+++|+.|+|++|.+++. |..+..+++|+.|++++|+++ .+|..+..+++|+.|+|++|++. +.+|..+..+
T Consensus 186 --~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 186 --GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp --CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred --cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 111367899999999999854 445889999999999999998 56778889999999999999998 7788888999
Q ss_pred ccCceEecc-CCcCcCcCCCC
Q 004218 347 RALRSLNLT-FNNLEGVVPRE 366 (767)
Q Consensus 347 ~~L~~L~l~-~N~l~~~~~~~ 366 (767)
++|+.|+++ .+.+++..+..
T Consensus 262 ~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HHHHHHHHHHHHHHHSSSSCC
T ss_pred ccceEEECCCchhccCCchhc
Confidence 999999998 44566655443
No 319
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-27 Score=263.05 Aligned_cols=236 Identities=21% Similarity=0.260 Sum_probs=177.9
Q ss_pred CCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEE
Q 004218 104 STRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSL 183 (767)
Q Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 183 (767)
+++|++|+|++|.+++..|..+..+++ |++|+|++|.+++..| |..+++|++|+|++|.|++..+ .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 346777777777777666667777776 7777777777765544 7777777777777777774322 2677777
Q ss_pred EccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhc-ccccccceeeccccc
Q 004218 184 DLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEIL-SLSSLTTIVNLSKNF 262 (767)
Q Consensus 184 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~l~~~l~l~~n~ 262 (767)
++++|.+.+..+. .+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..+. .+++| +.|+|++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCc
Confidence 7777777755443 346677777777777776677777777777777777777766666665 56666 344777777
Q ss_pred CCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccC-CCCCc
Q 004218 263 LDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLS-GSIPS 341 (767)
Q Consensus 263 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~ 341 (767)
+++.. ....+++|+.|+|++|.+++.+| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 77552 23458999999999999997555 59999999999999999995 6777999999999999999998 67777
Q ss_pred cccccccCceEecc
Q 004218 342 DLQNLRALRSLNLT 355 (767)
Q Consensus 342 ~~~~l~~L~~L~l~ 355 (767)
.+..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 88888888888775
No 320
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=9.9e-26 Score=230.24 Aligned_cols=228 Identities=21% Similarity=0.223 Sum_probs=155.2
Q ss_pred EECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCc
Q 004218 110 LAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQ 189 (767)
Q Consensus 110 L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 189 (767)
.+..+.++. .+|..+. .+|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|+|++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 445555555 4454332 237777777777776666667777777777777777776666667777777777777777
Q ss_pred cccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCch
Q 004218 190 ISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPE 269 (767)
Q Consensus 190 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~ 269 (767)
+.+..+..|..+++|++|++++|.+++..+..++.+++|++|++++|.+++. .+|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~l~~ 143 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF------------------------KLPE 143 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------------------------CCCG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee------------------------cCch
Confidence 7766666677777777777777777766555667777777777777766521 1344
Q ss_pred hhcCCCceeEEEccCCCCCCCCCcccccCcccc----eeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccc
Q 004218 270 EIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLE----KLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQN 345 (767)
Q Consensus 270 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (767)
.++.+++|+.|++++|++++..+..+..+++|+ .|++++|.+++..+..+. ..+|+.|+|++|++++..+..+..
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence 556666777777777777766666666666666 677777777755444443 347888888888888666666778
Q ss_pred cccCceEeccCCcCcCcCCCC
Q 004218 346 LRALRSLNLTFNNLEGVVPRE 366 (767)
Q Consensus 346 l~~L~~L~l~~N~l~~~~~~~ 366 (767)
+++|+.|++++|++++..+..
T Consensus 223 l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCSCCEEECCSSCBCCCTTTT
T ss_pred cccccEEEccCCcccccCCch
Confidence 888888888888888766543
No 321
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.7e-25 Score=225.95 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=188.6
Q ss_pred cEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecC
Q 004218 5 VYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGF 84 (767)
Q Consensus 5 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 84 (767)
..++.++.+++ .+|..+. ++|++|++++|++.+..+..|.++++|++|+|++|.+++..+..+..+++|++|++++
T Consensus 10 ~~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp TEEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 35677888887 8998764 4799999999999977777899999999999999999977777899999999999999
Q ss_pred ccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCccccc-CCccccCCCCCCEEECcC
Q 004218 85 NKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGK-IPTSIGRLRSLTLLNLSY 163 (767)
Q Consensus 85 n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~ 163 (767)
|.+... .+..+.++++|++|++++|++.+..+..+..+++ |++|++++|++++. +|..+.++++|++|++++
T Consensus 86 n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 86 NPIQSL------ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp CCCCEE------CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT-CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CccCcc------ChhhhcCCccccEEECCCCCccccCchhcccCCC-CCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence 998743 2346788899999999999998766667888887 99999999999863 588899999999999999
Q ss_pred CcCcccCccccCCCCCCC----EEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccC
Q 004218 164 NSISGEILTEIGQLQELQ----SLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 164 n~i~~~~~~~~~~l~~L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (767)
|++++..+..+..+++|+ +|++++|.+.+..+..+.. .+|++|+|++|++++..+..|..+++|+.|++++|++.
T Consensus 159 N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 999987777777777766 8999999998665555544 48999999999998877777888999999999999988
Q ss_pred CCC
Q 004218 240 GNI 242 (767)
Q Consensus 240 ~~~ 242 (767)
+..
T Consensus 238 c~c 240 (276)
T 2z62_A 238 CSC 240 (276)
T ss_dssp CCT
T ss_pred ccC
Confidence 644
No 322
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=7.6e-29 Score=282.91 Aligned_cols=350 Identities=11% Similarity=0.075 Sum_probs=153.1
Q ss_pred CCCCCcEEEccCCcccccCCccccCC--CCCCEEEccccc-Ccc-cCCccCCCCCCCcEEeecCccccCCCCCCcccccc
Q 004218 25 KLPNLLGFNFCFNKFTGKIPGSLHNL--TNIQIIRMAHNL-LEG-TVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITS 100 (767)
Q Consensus 25 ~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~-i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 100 (767)
.+++|++|+|++|.+.+..+..+... .+|++|+|++|. ++. .++.....+++|++|+|++|.+.+.+.. .+...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK--WLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH--HHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh--HHHHH
Confidence 35566666666665554444444432 235566665554 111 1111222445555555555554322100 02222
Q ss_pred ccCCCCCCEEECcCCcce----eecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECc--------------
Q 004218 101 LTNSTRLNFLAFDGNQFE----GEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLS-------------- 162 (767)
Q Consensus 101 l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~-------------- 162 (767)
+.++++|++|++++|.++ +.++..+..+++ |++|++++|.+.+ ++..+..+++|++|+++
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~-L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS-LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT-CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC-CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 334455555555555554 122233334444 5555555555542 33444444444444444
Q ss_pred -------------CCcCcccCccccCCCCCCCEEEccCCccccccC-cCcccCCCCceeeCCCCcCCC-CCcccccCccc
Q 004218 163 -------------YNSISGEILTEIGQLQELQSLDLAGNQISGSIP-NTLGNLKKLNQIDLSGNELAS-EIPTSFGNFQN 227 (767)
Q Consensus 163 -------------~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~ 227 (767)
++... ..+..+..+++|++|+|++|.+.+... ..+..+++|++|+++ |.+.. ..+..+..+++
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence 32111 223333344444444444444332111 122344444444444 22211 11112233445
Q ss_pred cccccccC-----------cccCCCC-ChhhcccccccceeecccccCCCCCchhhcC-CCceeEEEcc----CCCCCCC
Q 004218 228 LLSIDLSN-----------NKLNGNI-PKEILSLSSLTTIVNLSKNFLDGTLPEEIGM-LGNVVTIDLS----ANGLSGN 290 (767)
Q Consensus 228 L~~L~l~~-----------n~l~~~~-~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~-l~~L~~L~ls----~n~l~~~ 290 (767)
|++|++++ |.+++.. +..+..+++|.. ++++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY-MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE-EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE-EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 55555552 3333211 111223444422 255555555444444433 5556666664 4444432
Q ss_pred -----CCcccccCcccceeeccCcc--ccCCCCchhhc-cCCceEEEcCCcccCC-CCCccccccccCceEeccCCcCcC
Q 004218 291 -----LPNSFKNCKSLEKLLMANNK--FSGPIPNILAE-LKGLEVLDLSSNKLSG-SIPSDLQNLRALRSLNLTFNNLEG 361 (767)
Q Consensus 291 -----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~ 361 (767)
++..+.++++|+.|++++|. +++..+..+.. +++|+.|+|++|++++ .++..+..+++|+.|++++|++++
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 12224445566666665332 33333333322 5566666666666653 223334555666666666666543
Q ss_pred cCCC--CccccccccccccCCc
Q 004218 362 VVPR--EGIFRHTSMVHLEGNP 381 (767)
Q Consensus 362 ~~~~--~~~~~~~~~~~l~~Np 381 (767)
.... ...++++..+.+.+|.
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHHhcCccCeeECcCCc
Confidence 2111 1234555566666654
No 323
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=3.5e-28 Score=277.38 Aligned_cols=356 Identities=12% Similarity=0.063 Sum_probs=257.4
Q ss_pred CCCccEEeCCCCeeeecCCCccccCCCC-CcEEEccCCc-ccc-cCCccccCCCCCCEEEcccccCccc----CCccCCC
Q 004218 1 MTSLVYLGLASNQLWGEIPYDVGDKLPN-LLGFNFCFNK-FTG-KIPGSLHNLTNIQIIRMAHNLLEGT----VPPGLGN 73 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~~ip~~~~~~l~~-L~~L~l~~n~-l~~-~~~~~l~~l~~L~~L~l~~n~i~~~----~~~~~~~ 73 (767)
+++|++|+|++|.+++..+..+...++. |++|+|++|. +.. .++....++++|++|+|++|.+++. ++..+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 4678999999998876555554432344 8999998886 221 2233345788999999999988754 2234456
Q ss_pred CCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcc-----------
Q 004218 74 LPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRF----------- 142 (767)
Q Consensus 74 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i----------- 142 (767)
+++|++|++++|.+.....+ .+...+.++++|+.|++++|.+.+ +|..+..+++ |++|+++.+..
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPK--DLETIARNCRSLVSVKVGDFEILE-LVGFFKAAAN-LEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHH--HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTT-CCEEEECBCCCCTTCTTSSSCC
T ss_pred CCCccEEEeeccCCCccCHH--HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhH-HHhhcccccccccchHHHHHHh
Confidence 78899999998887633222 344455678889999999988874 6677777776 77777763211
Q ss_pred ---------------cccCCccccCCCCCCEEECcCCcCcccCc-cccCCCCCCCEEEccCCccc-cccCcCcccCCCCc
Q 004218 143 ---------------YGKIPTSIGRLRSLTLLNLSYNSISGEIL-TEIGQLQELQSLDLAGNQIS-GSIPNTLGNLKKLN 205 (767)
Q Consensus 143 ---------------~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~ 205 (767)
...+|..+..+++|++|+|++|.+++... ..+..+++|++|+++ +.+. ..++..+..+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 12356667778899999999999875443 346889999999999 4444 33444456789999
Q ss_pred eeeCCC-----------CcCCCCC-cccccCccccccccccCcccCCCCChhhcc-cccccceeecc----cccCCCC--
Q 004218 206 QIDLSG-----------NELASEI-PTSFGNFQNLLSIDLSNNKLNGNIPKEILS-LSSLTTIVNLS----KNFLDGT-- 266 (767)
Q Consensus 206 ~L~L~~-----------N~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~l~~~l~l~----~n~l~~~-- 266 (767)
+|+|++ |.++... +..+..+++|++|+++.|.+++..+..+.. +++|.. ++++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~-L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD-FRLVLLDREERITDLPL 424 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCE-EEEEECSCCSCCSSCCC
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcE-EEEeecCCCccccCchH
Confidence 999993 5665322 222456899999999999998777767665 777744 4885 6788764
Q ss_pred ---CchhhcCCCceeEEEccCCC--CCCCCCcccc-cCcccceeeccCccccCC-CCchhhccCCceEEEcCCcccCCC-
Q 004218 267 ---LPEEIGMLGNVVTIDLSANG--LSGNLPNSFK-NCKSLEKLLMANNKFSGP-IPNILAELKGLEVLDLSSNKLSGS- 338 (767)
Q Consensus 267 ---~~~~~~~l~~L~~L~ls~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~- 338 (767)
++..+..+++|+.|++++|. +++..+..+. .+++|+.|++++|++++. .+..+..+++|+.|+|++|.+++.
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 34457789999999998644 6654444444 488999999999999863 445567889999999999998744
Q ss_pred CCccccccccCceEeccCCcCcCc
Q 004218 339 IPSDLQNLRALRSLNLTFNNLEGV 362 (767)
Q Consensus 339 ~~~~~~~l~~L~~L~l~~N~l~~~ 362 (767)
++..+..+++|+.|++++|+++..
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhcCccCeeECcCCcCCHH
Confidence 344456789999999999998865
No 324
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=8.5e-25 Score=224.08 Aligned_cols=205 Identities=24% Similarity=0.276 Sum_probs=102.0
Q ss_pred ccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccc
Q 004218 150 IGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLL 229 (767)
Q Consensus 150 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 229 (767)
++++++++++++++|.++ .+|..+. +++++|+|++|.+.+..+..|..+++|++|+|++|.+++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 344455555555555555 2333222 455555555555554445555555555555555555553222 14555555
Q ss_pred cccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCc
Q 004218 230 SIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANN 309 (767)
Q Consensus 230 ~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 309 (767)
+|++++|+++ .+|.. +..+++|+.|++++|++++..+..|..+++|+.|+|++|
T Consensus 81 ~L~Ls~N~l~-~l~~~-------------------------~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLL-------------------------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp EEECCSSCCS-SCCCC-------------------------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchh-------------------------hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 5555555554 22222 233344444444444444444444444555555555555
Q ss_pred cccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCCCccccccccccccCCcCccc
Q 004218 310 KFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPREGIFRHTSMVHLEGNPKLCL 385 (767)
Q Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~~Np~~c~ 385 (767)
++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|+++.+++.......+..+.+.+|||.|.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 5544444444455555555555555554333344445555555555555554444433444455556666666663
No 325
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.4e-24 Score=217.80 Aligned_cols=205 Identities=22% Similarity=0.279 Sum_probs=146.9
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
.+.+++++++++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|+++...+..|..+++|++|+|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 677888888887 4565543 5778888888888766666777788888888888887755556667777888888888
Q ss_pred CcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCC
Q 004218 212 NELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNL 291 (767)
Q Consensus 212 N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 291 (767)
|+++...+..|..+++|++|++++|++++ ..+..|+.+++|+.|+|++|.+++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKS-------------------------LPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCC-------------------------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCe-------------------------eCHHHhCcCcCCCEEECCCCcCCccC
Confidence 87776666667777777777777776663 23344556667777777777777666
Q ss_pred CcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCC
Q 004218 292 PNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVP 364 (767)
Q Consensus 292 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 364 (767)
+..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 6667777777777777777776666667777777777777777776555567777777777777777665443
No 326
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6e-24 Score=215.98 Aligned_cols=201 Identities=21% Similarity=0.283 Sum_probs=112.6
Q ss_pred ccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeec
Q 004218 4 LVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIG 83 (767)
Q Consensus 4 L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 83 (767)
.+.+++++++++ .+|..+. ++|++|+|++|++.+..+..|.++++|++|+|++|.++...+..|..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 455666666665 5655443 355666666666654444455666666666666666553333334555555555555
Q ss_pred CccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcC
Q 004218 84 FNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSY 163 (767)
Q Consensus 84 ~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 163 (767)
+|++. +..+..+..+++ |++|++++|++++..+..|..+++|++|+|++
T Consensus 94 ~n~l~------------------------------~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 94 DNKLQ------------------------------ALPIGVFDQLVN-LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp SSCCC------------------------------CCCTTTTTTCSS-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcCC------------------------------cCCHhHcccccC-CCEEECCCCccCeeCHHHhCcCcCCCEEECCC
Confidence 55544 333333444444 55555555555554455555566666666666
Q ss_pred CcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccC
Q 004218 164 NSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 164 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (767)
|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 6665544444556666666666666666544455566666666666666666555555556666666666666655
No 327
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.2e-24 Score=218.88 Aligned_cols=202 Identities=22% Similarity=0.179 Sum_probs=143.8
Q ss_pred CCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCC
Q 004218 25 KLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNS 104 (767)
Q Consensus 25 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 104 (767)
.+++++++++++|+++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.++.. + ....+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~-~~~~l 76 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-------Q-VDGTL 76 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-------E-CCSCC
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-------c-CCCCC
Confidence 4566666666666666 4454443 5666666666666655556666666666666666666432 1 12456
Q ss_pred CCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEE
Q 004218 105 TRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLD 184 (767)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 184 (767)
++|++|++++|+++ .+|..+..+++ |++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~-L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPA-LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTT-CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcCC-cCchhhccCCC-CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 67777777777776 56666777776 88888888888766667788888888888888888877667778888888888
Q ss_pred ccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCC
Q 004218 185 LAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNG 240 (767)
Q Consensus 185 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (767)
|++|+++...+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.+..
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 8888888666666778888888888888887 456666677788888888888763
No 328
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=6e-26 Score=252.16 Aligned_cols=192 Identities=16% Similarity=0.130 Sum_probs=141.3
Q ss_pred CCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCc--------chhhHHHHHHHHhcCCCCCceeEEeeeecCCccc
Q 004218 456 NFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTG--------TWKSFFAECEALRNTRHRNLVKLITSCSSLDFKN 527 (767)
Q Consensus 456 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 527 (767)
.+...+.||+|+||.||+|... ++.+|+|........ ..+++.+|++++++++||||+++..++. .
T Consensus 337 ~~~~~~~LG~G~fg~Vy~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~-----~ 410 (540)
T 3en9_A 337 RKIPEHLIGKGAEADIKRDSYL-DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDV-----D 410 (540)
T ss_dssp -----------CCEEEEEEECS-SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEE-----E
T ss_pred cCCCCCEEeeCCCEEEEEEEEC-CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEE-----e
Confidence 3345678999999999999554 788999986432211 1345789999999999999994444432 2
Q ss_pred ceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEc
Q 004218 528 MEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVG 607 (767)
Q Consensus 528 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~ 607 (767)
....++||||+++++|.+++.. +..++.|+++||+|||++ +|+||||||+||+++. .+||+
T Consensus 411 ~~~~~lVmE~~~ggsL~~~l~~--------------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~ 471 (540)
T 3en9_A 411 LDNKRIMMSYINGKLAKDVIED--------------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYII 471 (540)
T ss_dssp TTTTEEEEECCCSEEHHHHSTT--------------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHH--------------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEE
Confidence 2334999999999999999864 457999999999999999 9999999999999999 99999
Q ss_pred cccchhhhhhhcCCCcc-ccccccccCCCCccCccccCC--CCCCCcccchhhhHHHHHHHhCCCCCC
Q 004218 608 DFGLARSLLERIGNQSS-ISSTHVLKGSIGYIPPEYGLG--EKPSTAGDVYSFGVMLLEIFTGMSPTH 672 (767)
Q Consensus 608 Dfg~a~~~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slG~il~el~tg~~p~~ 672 (767)
|||+++........... ........||+.|+|||++.. ..|+..+|+|+..+-..+.+.++.+|.
T Consensus 472 DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 472 DFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp CCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred ECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 99999876432110000 001235679999999999876 567888999999999999888887763
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.4e-24 Score=219.16 Aligned_cols=204 Identities=23% Similarity=0.308 Sum_probs=124.8
Q ss_pred hhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCc
Q 004218 126 GNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLN 205 (767)
Q Consensus 126 ~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 205 (767)
..+.+ |++|++++|.++. ...+..+++|++|++++|.+++ ...+..+++|++|++++|.+++..+..|..+++|+
T Consensus 38 ~~l~~-L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNS-IDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTT-CCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccc-eeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34444 5555555555542 1235555555555555555553 13455555555555555555544444455555555
Q ss_pred eeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCC
Q 004218 206 QIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSAN 285 (767)
Q Consensus 206 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 285 (767)
+|+|++|++++..+..|..+++|++|++++|+++ +..+..++.+++|+.|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-------------------------SLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccC-------------------------ccCHHHhccCccCCEEECCCC
Confidence 5555555555544444555555555555555544 333444556667777777777
Q ss_pred CCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcCCC
Q 004218 286 GLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPR 365 (767)
Q Consensus 286 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 365 (767)
++++..+..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++.+. +++|+.|+++.|.++|.+|.
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 77766666677777777777777777776666677777788888887777643 34677777788888777665
Q ss_pred C
Q 004218 366 E 366 (767)
Q Consensus 366 ~ 366 (767)
.
T Consensus 241 ~ 241 (272)
T 3rfs_A 241 S 241 (272)
T ss_dssp T
T ss_pred c
Confidence 3
No 330
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1e-24 Score=221.81 Aligned_cols=199 Identities=25% Similarity=0.334 Sum_probs=108.3
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCC
Q 004218 28 NLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRL 107 (767)
Q Consensus 28 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L 107 (767)
++..+++..+.+.+.. .+..+++|+.|++++|.++ .+ ..++.+++|++|++++|++.+ +..+.++++|
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~--------~~~l~~l~~L 87 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD--------ISALKELTNL 87 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC--------CGGGTTCTTC
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC--------chhhcCCCCC
Confidence 3444555555554322 2445555666666666554 22 235555556666666555532 1244555555
Q ss_pred CEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccC
Q 004218 108 NFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAG 187 (767)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (767)
++|++++|++++..+..+..+++ |++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 88 ~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 88 TYLILTGNQLQSLPNGVFDKLTN-LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCccChhHhcCCcC-CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 55555555555444444555555 66666666665555455555555666666666655554444455555666666666
Q ss_pred CccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccC
Q 004218 188 NQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 188 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (767)
|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 6655544445555556666666666665555555555555666655555554
No 331
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=6.5e-27 Score=267.08 Aligned_cols=351 Identities=12% Similarity=0.061 Sum_probs=192.1
Q ss_pred CCCCCcEEEccCCcccccCCcccc-CCCCCCEEEcccc-cCccc-CCccCCCCCCCcEEeecCccccCCCCCCccccccc
Q 004218 25 KLPNLLGFNFCFNKFTGKIPGSLH-NLTNIQIIRMAHN-LLEGT-VPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSL 101 (767)
Q Consensus 25 ~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 101 (767)
.+++|++|+|++|.+.+..+..+. .+++|++|+|++| .+++. ++..+..+++|++|+|++|.+...... .+....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~--~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH--WLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG--GGGGSC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH--HHHHHh
Confidence 345555566655555544444443 4555555555555 33321 222223455555555555554432111 111222
Q ss_pred cCCCCCCEEECcCCc--ceee-cCchhhhhccccCeEEccCC-cccccCCccccCCCCCCEEECcCCc------------
Q 004218 102 TNSTRLNFLAFDGNQ--FEGE-IPESIGNLSNVLSKLYMGGN-RFYGKIPTSIGRLRSLTLLNLSYNS------------ 165 (767)
Q Consensus 102 ~~l~~L~~L~l~~n~--l~~~-~~~~~~~l~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~~n~------------ 165 (767)
..+++|+.|++++|. ++.. ++..+..+++ |++|++++| .+. .++..+..+++|++|+++.+.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~-L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPN-LKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT-CCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCC-CcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 244555555555554 1100 1111122233 555555555 222 234444444444444433321
Q ss_pred --------------Cc----ccCccccCCCCCCCEEEccCCcccccc-CcCcccCCCCceeeCCCCcCCCC-CcccccCc
Q 004218 166 --------------IS----GEILTEIGQLQELQSLDLAGNQISGSI-PNTLGNLKKLNQIDLSGNELASE-IPTSFGNF 225 (767)
Q Consensus 166 --------------i~----~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l 225 (767)
+. ..++..+..+++|++|+|++|.+.+.. +..+..+++|++|++++| +... .+.....+
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 11 122333335688888888888876432 223457788888888887 4321 12222357
Q ss_pred ccccccccc---------CcccCCCCChhhc-ccccccceeecccccCCCCCchhhc-CCCceeEEEcc--C----CCCC
Q 004218 226 QNLLSIDLS---------NNKLNGNIPKEIL-SLSSLTTIVNLSKNFLDGTLPEEIG-MLGNVVTIDLS--A----NGLS 288 (767)
Q Consensus 226 ~~L~~L~l~---------~n~l~~~~~~~~~-~l~~l~~~l~l~~n~l~~~~~~~~~-~l~~L~~L~ls--~----n~l~ 288 (767)
++|++|+++ .+.+++.....+. .+++|..+ .+..|.+++..+..+. .+++|+.|+++ + |.++
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L-~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE-EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH-HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 888888873 3444433223333 36777555 7777887765555554 57888888888 3 4555
Q ss_pred CCCC-----cccccCcccceeeccCccccCCCCchhhc-cCCceEEEcCCcccCCCCCccc-cccccCceEeccCCcCcC
Q 004218 289 GNLP-----NSFKNCKSLEKLLMANNKFSGPIPNILAE-LKGLEVLDLSSNKLSGSIPSDL-QNLRALRSLNLTFNNLEG 361 (767)
Q Consensus 289 ~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~ 361 (767)
+... ..+..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|++++
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 2211 2256778888888877 565544455554 7888888888888865444444 567888888888888854
Q ss_pred cCCC--CccccccccccccCCcC
Q 004218 362 VVPR--EGIFRHTSMVHLEGNPK 382 (767)
Q Consensus 362 ~~~~--~~~~~~~~~~~l~~Np~ 382 (767)
.... ...++++..+.+.+|+.
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHhCCCCCEEeeeCCCC
Confidence 3221 13356777778877753
No 332
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2.6e-25 Score=236.35 Aligned_cols=269 Identities=12% Similarity=0.147 Sum_probs=194.9
Q ss_pred EEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCC----ccccCCC-CCCEEEcccccCcccCCccCCCC-----C
Q 004218 6 YLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIP----GSLHNLT-NIQIIRMAHNLLEGTVPPGLGNL-----P 75 (767)
Q Consensus 6 ~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~l-----~ 75 (767)
.++|++|+++|.+|.... ..++|++|+|++|.+.+..+ ..|.+++ +|++|+|++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 468899999977775543 35669999999999997666 7788888 89999999999987766666664 8
Q ss_pred CCcEEeecCccccCCCCCCccccccccCC-CCCCEEECcCCcceeecCchhhhh----ccccCeEEccCCcccccC----
Q 004218 76 FLKMYNIGFNKIVGSGDEGLSFITSLTNS-TRLNFLAFDGNQFEGEIPESIGNL----SNVLSKLYMGGNRFYGKI---- 146 (767)
Q Consensus 76 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l----~~~L~~L~l~~n~i~~~~---- 146 (767)
+|++|+|++|.+...+.. .+...+..+ ++|++|+|++|++++..+..+... ..+|++|+|++|+++...
T Consensus 81 ~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSD--ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TCCEEECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CccEEECcCCcCChHHHH--HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 899999999998753222 233345555 789999999999987666666553 224999999999988533
Q ss_pred CccccCCC-CCCEEECcCCcCcccCcccc----CCC-CCCCEEEccCCccccc----cCcCccc-CCCCceeeCCCCcCC
Q 004218 147 PTSIGRLR-SLTLLNLSYNSISGEILTEI----GQL-QELQSLDLAGNQISGS----IPNTLGN-LKKLNQIDLSGNELA 215 (767)
Q Consensus 147 ~~~l~~l~-~L~~L~l~~n~i~~~~~~~~----~~l-~~L~~L~L~~n~i~~~----~~~~~~~-l~~L~~L~L~~N~l~ 215 (767)
+..+..++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|.|.+. ++..+.. .++|++|+|++|+++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 34445555 89999999999987666444 344 5899999999998852 3445555 358999999999988
Q ss_pred CCCc----ccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCC
Q 004218 216 SEIP----TSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNL 291 (767)
Q Consensus 216 ~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 291 (767)
...+ ..+..+++|+.|+|++|.+.+..+..+.. ++..+..+++|+.||+++|.+....
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~------------------l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA------------------LGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHH------------------HHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHH------------------HHHHhccCCceEEEecCCCcCCCcc
Confidence 6544 33466788888888888876433332221 2334567788999999999887654
Q ss_pred Cccc
Q 004218 292 PNSF 295 (767)
Q Consensus 292 ~~~~ 295 (767)
+..+
T Consensus 301 ~~~~ 304 (362)
T 3goz_A 301 SIPI 304 (362)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 4333
No 333
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=6.2e-25 Score=233.44 Aligned_cols=262 Identities=16% Similarity=0.204 Sum_probs=147.1
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEcccccCcccCC----ccCCCCC-CCcEEeecCccccCCCCCCccccccccCC-
Q 004218 31 GFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVP----PGLGNLP-FLKMYNIGFNKIVGSGDEGLSFITSLTNS- 104 (767)
Q Consensus 31 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l- 104 (767)
.+++++|++.+.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|++...+.. .+...+...
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD--ELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH--HHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH--HHHHHHhccC
Confidence 35677888887777777777778888888888875554 5566666 677777777776542211 122222222
Q ss_pred CCCCEEECcCCcceeecCchhhhh-----ccccCeEEccCCcccccCCccc----cC-CCCCCEEECcCCcCcccCcc--
Q 004218 105 TRLNFLAFDGNQFEGEIPESIGNL-----SNVLSKLYMGGNRFYGKIPTSI----GR-LRSLTLLNLSYNSISGEILT-- 172 (767)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l-----~~~L~~L~l~~n~i~~~~~~~l----~~-l~~L~~L~l~~n~i~~~~~~-- 172 (767)
++|++|+|++|++++..+..++.. ++ |++|++++|+++...+..+ .. .++|++|+|++|.+++....
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~-L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFT-ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTT-CCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCC-ccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 667777777777765555544443 34 6667777666665444333 22 24666666666666643322
Q ss_pred --ccCCCC-CCCEEEccCCccccccCcCcc----cC-CCCceeeCCCCcCCCC----CcccccC-ccccccccccCcccC
Q 004218 173 --EIGQLQ-ELQSLDLAGNQISGSIPNTLG----NL-KKLNQIDLSGNELASE----IPTSFGN-FQNLLSIDLSNNKLN 239 (767)
Q Consensus 173 --~~~~l~-~L~~L~L~~n~i~~~~~~~~~----~l-~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~n~l~ 239 (767)
.+..++ +|++|+|++|++++..+..+. .+ ++|++|+|++|.++.. ++..+.. .++|++|+|++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 223343 666666666666544443332 23 3666666666666532 1222322 235555555555555
Q ss_pred CCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCC-------CcccccCcccceeeccCcccc
Q 004218 240 GNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNL-------PNSFKNCKSLEKLLMANNKFS 312 (767)
Q Consensus 240 ~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-------~~~~~~l~~L~~L~l~~n~l~ 312 (767)
+..+..+ ...+..+++|+.|+|++|.+.+.. +..+..+++|+.|++++|.+.
T Consensus 239 ~~~~~~l---------------------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 239 GPSLENL---------------------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CCCHHHH---------------------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cHHHHHH---------------------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 3222111 122345566777777777744332 234556666777777777766
Q ss_pred CCCC
Q 004218 313 GPIP 316 (767)
Q Consensus 313 ~~~~ 316 (767)
...+
T Consensus 298 ~~~~ 301 (362)
T 3goz_A 298 PSHS 301 (362)
T ss_dssp GGGC
T ss_pred Ccch
Confidence 5433
No 334
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=3.8e-26 Score=260.69 Aligned_cols=351 Identities=16% Similarity=0.147 Sum_probs=221.7
Q ss_pred CCccEEeCCCCeeeecCCCccccCCCCCcEEEccCC-ccccc-CCccccCCCCCCEEEcccccCcccCCccC----CCCC
Q 004218 2 TSLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFN-KFTGK-IPGSLHNLTNIQIIRMAHNLLEGTVPPGL----GNLP 75 (767)
Q Consensus 2 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~----~~l~ 75 (767)
++|++|+|++|.+++..+..+...+++|++|+|++| .+... ++..+.++++|++|+|++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 568888888888776555555545788888888888 45432 44445578888888888888765443333 3566
Q ss_pred CCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCC-cceeecCchhhhhccccCeEEccCCc-------------
Q 004218 76 FLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGN-QFEGEIPESIGNLSNVLSKLYMGGNR------------- 141 (767)
Q Consensus 76 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~~L~~L~l~~n~------------- 141 (767)
+|++|++++|. ...... .+.....++++|++|++++| .+. .++..+..+++ |++|+++.+.
T Consensus 185 ~L~~L~l~~~~-~~~~~~--~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 185 SLVSLNISCLA-SEVSFS--ALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQ-LEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CCCEEECTTCC-SCCCHH--HHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTT-CSEEECSBCCCCCCHHHHHHHHH
T ss_pred cCcEEEecccC-CcCCHH--HHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCc-ceEcccccccCccchhhHHHHHH
Confidence 88888888876 111111 12222345688888888888 444 46677777776 8888765442
Q ss_pred -------------ccc----cCCccccCCCCCCEEECcCCcCcccCcc-ccCCCCCCCEEEccCCccccc-cCcCcccCC
Q 004218 142 -------------FYG----KIPTSIGRLRSLTLLNLSYNSISGEILT-EIGQLQELQSLDLAGNQISGS-IPNTLGNLK 202 (767)
Q Consensus 142 -------------i~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~ 202 (767)
+.. .++..+..+++|++|+|++|.+++.... .+..+++|++|++++| +... ++.....++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 111 1222233567888888888887643222 3567888888888887 4322 222233578
Q ss_pred CCceeeCC---------CCcCCCCCccccc-CccccccccccCcccCCCCChhhc-ccccccceeecc--c----ccCCC
Q 004218 203 KLNQIDLS---------GNELASEIPTSFG-NFQNLLSIDLSNNKLNGNIPKEIL-SLSSLTTIVNLS--K----NFLDG 265 (767)
Q Consensus 203 ~L~~L~L~---------~N~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~-~l~~l~~~l~l~--~----n~l~~ 265 (767)
+|++|+|+ .+.++......+. .+++|+.|.++.|.+++..+..+. .+++|.. ++++ + +.++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~-L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR-FRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE-EEEEESSTTCCCTTTC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce-eEeecccCCCcccccC
Confidence 88888873 3444432222222 477888888888887755555554 4666643 4777 3 45552
Q ss_pred CC-----chhhcCCCceeEEEccCCCCCCCCCccccc-CcccceeeccCccccCCCCchh-hccCCceEEEcCCcccCCC
Q 004218 266 TL-----PEEIGMLGNVVTIDLSANGLSGNLPNSFKN-CKSLEKLLMANNKFSGPIPNIL-AELKGLEVLDLSSNKLSGS 338 (767)
Q Consensus 266 ~~-----~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~ 338 (767)
.. +..+..+++|+.|+|++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|.+++.
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 21 12356677888888876 565544445544 7788888888888765444444 5678888888888888543
Q ss_pred CCc-cccccccCceEeccCCcCc
Q 004218 339 IPS-DLQNLRALRSLNLTFNNLE 360 (767)
Q Consensus 339 ~~~-~~~~l~~L~~L~l~~N~l~ 360 (767)
... .+..+++|+.|++++|+++
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHhCCCCCEEeeeCCCCC
Confidence 333 3445788888888888774
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=216.35 Aligned_cols=229 Identities=21% Similarity=0.220 Sum_probs=163.4
Q ss_pred CCCCEEECcCCcceeecCc---hhhhhccccCeEEccCCcccccCCccc--cCCCCCCEEECcCCcCcccCc----cccC
Q 004218 105 TRLNFLAFDGNQFEGEIPE---SIGNLSNVLSKLYMGGNRFYGKIPTSI--GRLRSLTLLNLSYNSISGEIL----TEIG 175 (767)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~---~~~~l~~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~l~~n~i~~~~~----~~~~ 175 (767)
..++.|.+.++.++...-. .+..+++ |++|++++|++.+..|..+ ..+++|++|+|++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSR-LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSC-CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCc-eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 4567777777766532111 1223445 8889999998888888877 888889999999988886443 3455
Q ss_pred CCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCC---C-cccccCccccccccccCcccCCCCChhhccccc
Q 004218 176 QLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASE---I-PTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSS 251 (767)
Q Consensus 176 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 251 (767)
.+++|++|+|++|++.+..+..|..+++|++|+|++|++.+. . +..+..+++|++|+|++|+++ .++...
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~----- 216 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVC----- 216 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHH-----
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHH-----
Confidence 788899999999988877778888888899999999887642 1 223467888888888888876 222110
Q ss_pred ccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccC---cccceeeccCccccCCCCchhhccCCceEE
Q 004218 252 LTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNC---KSLEKLLMANNKFSGPIPNILAELKGLEVL 328 (767)
Q Consensus 252 l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 328 (767)
...++.+++|++|+|++|.+++..|..+..+ ++|++|++++|+|+ .+|..+. ++|+.|
T Consensus 217 ----------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 217 ----------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp ----------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred ----------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 0123556777888888888877666666665 58888888888888 4555553 688888
Q ss_pred EcCCcccCCCCCccccccccCceEeccCCcCcC
Q 004218 329 DLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEG 361 (767)
Q Consensus 329 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 361 (767)
+|++|+|++. |. +..+++|+.|++++|+++.
T Consensus 278 ~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8888888854 33 5677888888888888864
No 336
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.4e-25 Score=241.10 Aligned_cols=259 Identities=15% Similarity=0.165 Sum_probs=147.8
Q ss_pred ccCCcccccCCccccCCCCCCEEEcccccCcccC----CccCCCCCCCcEEeecCccccCCCC----CCccccccccCCC
Q 004218 34 FCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTV----PPGLGNLPFLKMYNIGFNKIVGSGD----EGLSFITSLTNST 105 (767)
Q Consensus 34 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~l~~l~ 105 (767)
+....+. .++..+..+++|++|+|++|.+++.. +..+..+++|++|+|++|.+..... +...+...+.+++
T Consensus 16 l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 16 ITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp CCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 3333444 45556666666666666666666542 2335566666666666654432110 0001122235566
Q ss_pred CCCEEECcCCccee----ecCchhhhhccccCeEEccCCcccccCCccc----cCC---------CCCCEEECcCCcCcc
Q 004218 106 RLNFLAFDGNQFEG----EIPESIGNLSNVLSKLYMGGNRFYGKIPTSI----GRL---------RSLTLLNLSYNSISG 168 (767)
Q Consensus 106 ~L~~L~l~~n~l~~----~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l----~~l---------~~L~~L~l~~n~i~~ 168 (767)
+|++|+|++|+++. .+|..+..+++ |++|+|++|+++...+..+ ..+ ++|++|+|++|+++.
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTP-LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTT-CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCC-CCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 66666666666664 34555566665 6666666666653333222 222 677777777777762
Q ss_pred -cCc---cccCCCCCCCEEEccCCcccc-----ccCcCcccCCCCceeeCCCCcCC----CCCcccccCccccccccccC
Q 004218 169 -EIL---TEIGQLQELQSLDLAGNQISG-----SIPNTLGNLKKLNQIDLSGNELA----SEIPTSFGNFQNLLSIDLSN 235 (767)
Q Consensus 169 -~~~---~~~~~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~ 235 (767)
..+ ..+..+++|++|+|++|++.. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 222 345566677777777777662 23336666777777777777764 34555666667777777777
Q ss_pred cccCCCCChhhcccccccceeecccccCCCCCchhh--cCCCceeEEEccCCCCCC----CCCccc-ccCcccceeeccC
Q 004218 236 NKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEI--GMLGNVVTIDLSANGLSG----NLPNSF-KNCKSLEKLLMAN 308 (767)
Q Consensus 236 n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~--~~l~~L~~L~ls~n~l~~----~~~~~~-~~l~~L~~L~l~~ 308 (767)
|.+++.... .++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|++++
T Consensus 254 n~i~~~~~~---------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 254 CLLSARGAA---------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp CCCCHHHHH---------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred CCCchhhHH---------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 766532111 122333 235667777777777765 255555 4567777777777
Q ss_pred ccccCCC
Q 004218 309 NKFSGPI 315 (767)
Q Consensus 309 n~l~~~~ 315 (767)
|.+++..
T Consensus 313 N~l~~~~ 319 (386)
T 2ca6_A 313 NRFSEED 319 (386)
T ss_dssp SBSCTTS
T ss_pred CcCCcch
Confidence 7777554
No 337
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3e-23 Score=206.81 Aligned_cols=196 Identities=15% Similarity=0.245 Sum_probs=103.3
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCc-CcccCccccCCCCCCCEEEccC-CccccccCcCcccCCCCceeeC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNS-ISGEILTEIGQLQELQSLDLAG-NQISGSIPNTLGNLKKLNQIDL 209 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L 209 (767)
|++|++++|++++..+..|.++++|++|++++|+ ++.+.+..|.++++|++|++++ |+++...+..|.++++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 5555555555554444455555555555555554 5544444555555555555555 5555444445555555555555
Q ss_pred CCCcCCCCCcccccCccccc---cccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCcee-EEEccCC
Q 004218 210 SGNELASEIPTSFGNFQNLL---SIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVV-TIDLSAN 285 (767)
Q Consensus 210 ~~N~l~~~~~~~~~~l~~L~---~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~-~L~ls~n 285 (767)
++|++++ +|. |..+++|+ .|++++|. .+++..+..|..+++|+ .|++++|
T Consensus 113 ~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~------------------------~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 113 FNTGLKM-FPD-LTKVYSTDIFFILEITDNP------------------------YMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEECCCS-CCC-CTTCCBCCSEEEEEEESCT------------------------TCCEECTTTTTTTBSSEEEEECCSC
T ss_pred CCCCCcc-ccc-cccccccccccEEECCCCc------------------------chhhcCcccccchhcceeEEEcCCC
Confidence 5555543 332 44444444 44444440 33333334455566666 6666666
Q ss_pred CCCCCCCcccccCcccceeeccCcc-ccCCCCchhhcc-CCceEEEcCCcccCCCCCccccccccCceEeccCC
Q 004218 286 GLSGNLPNSFKNCKSLEKLLMANNK-FSGPIPNILAEL-KGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFN 357 (767)
Q Consensus 286 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 357 (767)
+++.+.+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 666433333443 566666666663 665555556666 666666666666663 3322 4455666666544
No 338
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=214.25 Aligned_cols=222 Identities=18% Similarity=0.125 Sum_probs=170.2
Q ss_pred ccEEeCCCCeeee----cCCCccccCCCCCcEEEccCCcccccCCccc--cCCCCCCEEEcccccCcccCC----ccCCC
Q 004218 4 LVYLGLASNQLWG----EIPYDVGDKLPNLLGFNFCFNKFTGKIPGSL--HNLTNIQIIRMAHNLLEGTVP----PGLGN 73 (767)
Q Consensus 4 L~~L~l~~n~l~~----~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~i~~~~~----~~~~~ 73 (767)
++.|.++++.+.. .++... .+++|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVL--AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHH--HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred eeEEEEeCCcCCHHHHHHHHHhc--ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 5677777777652 122222 25679999999999988888877 889999999999999886544 34557
Q ss_pred CCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceee--c--CchhhhhccccCeEEccCCcccccCCc-
Q 004218 74 LPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGE--I--PESIGNLSNVLSKLYMGGNRFYGKIPT- 148 (767)
Q Consensus 74 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~~L~~L~l~~n~i~~~~~~- 148 (767)
+++|++|+|++|++... .+..+.++++|++|+|++|++.+. + +..+..+++ |++|++++|+++. ++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~-l~~~ 215 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAF------SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA-IQNLALRNTGMET-PTGV 215 (310)
T ss_dssp CSCCCEEEEECCSSCCC------CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC-CCSCBCCSSCCCC-HHHH
T ss_pred ccCCCEEEeeCCCcchh------hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC-CCEEECCCCCCCc-hHHH
Confidence 88999999999988653 334677888999999999987642 2 222356776 9999999999873 232
Q ss_pred ---cccCCCCCCEEECcCCcCcccCccccCCC---CCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccc
Q 004218 149 ---SIGRLRSLTLLNLSYNSISGEILTEIGQL---QELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSF 222 (767)
Q Consensus 149 ---~l~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 222 (767)
.+..+++|++|+|++|.+++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|++|++++. |. +
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~ 290 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-P 290 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-T
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-h
Confidence 35778999999999999998777777766 69999999999999 6676664 7999999999999864 33 6
Q ss_pred cCccccccccccCcccCC
Q 004218 223 GNFQNLLSIDLSNNKLNG 240 (767)
Q Consensus 223 ~~l~~L~~L~l~~n~l~~ 240 (767)
..+++|+.|+|++|+++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TSCCCCSCEECSSTTTSC
T ss_pred hhCCCccEEECcCCCCCC
Confidence 788999999999999873
No 339
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3.9e-25 Score=237.56 Aligned_cols=247 Identities=18% Similarity=0.242 Sum_probs=143.0
Q ss_pred cccccccCCCCCCEEECcCCcceeecCch----hhhhccccCeEEccCCc---ccccCCccc-------cCCCCCCEEEC
Q 004218 96 SFITSLTNSTRLNFLAFDGNQFEGEIPES----IGNLSNVLSKLYMGGNR---FYGKIPTSI-------GRLRSLTLLNL 161 (767)
Q Consensus 96 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~~L~~L~l~~n~---i~~~~~~~l-------~~l~~L~~L~l 161 (767)
.++..+..+++|+.|+|++|+++...+.. +..+++ |++|+|++|. +.+.+|..+ ..+++|++|+|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD-LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTT-CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCC-ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34445555566666666666665443333 334444 6666665542 222333333 45555555555
Q ss_pred cCCcCcc----cCccccCCCCCCCEEEccCCccccccCcCcc----cC---------CCCceeeCCCCcCCC-CCc---c
Q 004218 162 SYNSISG----EILTEIGQLQELQSLDLAGNQISGSIPNTLG----NL---------KKLNQIDLSGNELAS-EIP---T 220 (767)
Q Consensus 162 ~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~L~~N~l~~-~~~---~ 220 (767)
++|.++. .++..+..+++|++|+|++|.+....+..+. .+ ++|++|+|++|+++. ..+ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 5555554 2344455555555555555555432222222 22 555555555555541 122 2
Q ss_pred cccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCC----CCCCcccc
Q 004218 221 SFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLS----GNLPNSFK 296 (767)
Q Consensus 221 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~----~~~~~~~~ 296 (767)
.+..+++|++|+|++|+++.. .+. ...+..+..+++|+.|+|++|.++ ..+|..+.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~---g~~-----------------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPE---GIE-----------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHH---HHH-----------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred HHHhCCCcCEEECcCCCCCHh---HHH-----------------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 333445555555555544310 000 022335667788888888888885 45667778
Q ss_pred cCcccceeeccCccccCC----CCchhhc--cCCceEEEcCCcccCC----CCCccc-cccccCceEeccCCcCcCcC
Q 004218 297 NCKSLEKLLMANNKFSGP----IPNILAE--LKGLEVLDLSSNKLSG----SIPSDL-QNLRALRSLNLTFNNLEGVV 363 (767)
Q Consensus 297 ~l~~L~~L~l~~n~l~~~----~~~~~~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~ 363 (767)
.+++|+.|+|++|.+++. ++..+.. +++|+.|+|++|.+++ .+|..+ ..+++|+.|++++|++++..
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 888888888888888754 4455533 7888888888888886 366666 55788888888888888653
No 340
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7.8e-24 Score=223.06 Aligned_cols=250 Identities=21% Similarity=0.249 Sum_probs=158.8
Q ss_pred CCEEECcCCcceeecCchhhhh--ccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCccc-CccccCCCCCCCEE
Q 004218 107 LNFLAFDGNQFEGEIPESIGNL--SNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGE-ILTEIGQLQELQSL 183 (767)
Q Consensus 107 L~~L~l~~n~l~~~~~~~~~~l--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L 183 (767)
++.+++++|.+. +..+..+ .. ++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~-l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQG-VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTT-CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhcc-ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 455555555554 2344444 33 66666666666544333 34556666666666665543 44555666666666
Q ss_pred EccCCccccccCcCcccCCCCceeeCCCC-cCCCC-CcccccCccccccccccCc-ccCCC-CChhhcccc-cccceeec
Q 004218 184 DLAGNQISGSIPNTLGNLKKLNQIDLSGN-ELASE-IPTSFGNFQNLLSIDLSNN-KLNGN-IPKEILSLS-SLTTIVNL 258 (767)
Q Consensus 184 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~l~~~l~l 258 (767)
+|++|.+.+..+..++.+++|++|+|++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +| +.+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEe
Confidence 66666665555555566666666666666 44431 3444555666666666666 55532 344555555 55 33366
Q ss_pred ccc--cCC-CCCchhhcCCCceeEEEccCCC-CCCCCCcccccCcccceeeccCcc-ccCCCCchhhccCCceEEEcCCc
Q 004218 259 SKN--FLD-GTLPEEIGMLGNVVTIDLSANG-LSGNLPNSFKNCKSLEKLLMANNK-FSGPIPNILAELKGLEVLDLSSN 333 (767)
Q Consensus 259 ~~n--~l~-~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~N 333 (767)
++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 666 333 3456667788899999999998 776777788999999999999995 33222236788999999999999
Q ss_pred ccCCCCCcccccc-ccCceEeccCCcCcCcCCCC
Q 004218 334 KLSGSIPSDLQNL-RALRSLNLTFNNLEGVVPRE 366 (767)
Q Consensus 334 ~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~ 366 (767)
+. ...+..+ .+++.|++++|++++..|..
T Consensus 283 -i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 -VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp -SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred -cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 43 2344555 34888889999999887754
No 341
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.6e-22 Score=209.38 Aligned_cols=207 Identities=20% Similarity=0.328 Sum_probs=157.0
Q ss_pred eCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccc
Q 004218 8 GLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKI 87 (767)
Q Consensus 8 ~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 87 (767)
.+..+.+++.++.. .+++|++|++++|.+. .+| .+..+++|++|+|++|.+++. +. +..+++|++|++++|++
T Consensus 25 ~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 25 AAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HTTCSSTTSEECHH---HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCC
T ss_pred HhCCCCcCceecHH---HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcC
Confidence 44555555323222 3678888888888888 455 478888888888888888843 33 88888888888888887
Q ss_pred cCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCc
Q 004218 88 VGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSIS 167 (767)
Q Consensus 88 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~ 167 (767)
... ..+.++++|++|++++|++++ ++ .+..+++ |++|++++|++++..+ +..+++|++|++++|.++
T Consensus 98 ~~~--------~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~-L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 98 KNV--------SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSN-LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp SCC--------GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTT-CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCc--------hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCC-CCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 632 357788888888888888874 33 3777777 8888888888875433 788888888888888888
Q ss_pred ccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCC
Q 004218 168 GEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNG 240 (767)
Q Consensus 168 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (767)
+..+ +..+++|++|++++|++++..+ +..+++|++|+|++|++++.. .+..+++|+.|++++|++++
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 5433 8888888888888888885433 788888888888888887544 37888888888888888873
No 342
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.5e-22 Score=201.76 Aligned_cols=211 Identities=15% Similarity=0.162 Sum_probs=177.1
Q ss_pred CCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccccc-CcccCCccCCCCCCCcEEeecC-cc
Q 004218 9 LASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNL-LEGTVPPGLGNLPFLKMYNIGF-NK 86 (767)
Q Consensus 9 l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~ 86 (767)
++.++++ ++|. +. ++|++|++++|++++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |+
T Consensus 18 v~c~~l~-~ip~-~~---~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 18 VTCKDIQ-RIPS-LP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp EEECSCS-SCCC-CC---TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred eEccCcc-ccCC-CC---CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 3344466 8987 43 489999999999997777789999999999999997 8866667899999999999998 88
Q ss_pred ccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccC---eEEccCC-cccccCCccccCCCCCC-EEEC
Q 004218 87 IVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLS---KLYMGGN-RFYGKIPTSIGRLRSLT-LLNL 161 (767)
Q Consensus 87 l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~---~L~l~~n-~i~~~~~~~l~~l~~L~-~L~l 161 (767)
++..+ +..+.++++|++|++++|++++ +|. +..+.+ |+ +|++++| +++...+..|.++++|+ +|++
T Consensus 93 l~~i~------~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~-L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 93 LTYID------PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYS-TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp CCEEC------TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCB-CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred eeEcC------HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccc-cccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 87432 2357788999999999999995 776 778877 88 9999999 99988788899999999 9999
Q ss_pred cCCcCcccCccccCCCCCCCEEEccCCc-cccccCcCcccC-CCCceeeCCCCcCCCCCcccccCccccccccccCcc
Q 004218 162 SYNSISGEILTEIGQLQELQSLDLAGNQ-ISGSIPNTLGNL-KKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNK 237 (767)
Q Consensus 162 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 237 (767)
++|+++.+.+..|.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 164 ~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 164 YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 999999555555555 899999999995 997777889999 9999999999999865444 57888999888763
No 343
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.88 E-value=3.3e-23 Score=210.65 Aligned_cols=152 Identities=19% Similarity=0.093 Sum_probs=119.9
Q ss_pred HHHHHHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCC------------------cchhhHHHHHHHHhcCC
Q 004218 448 DELRRATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIEST------------------GTWKSFFAECEALRNTR 509 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~e~~~l~~l~ 509 (767)
..+......|.+.+.||+|+||.||+|.+.+|+.||+|+++.... .....+.+|++++++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 344455566778899999999999999997799999999864321 12356889999999998
Q ss_pred CCCceeEEeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEee
Q 004218 510 HRNLVKLITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHC 589 (767)
Q Consensus 510 h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~ 589 (767)
| +++.+++. .+..++||||++||+|.+ +.. .+...++.|++.||+|||+. ||+||
T Consensus 163 ~---~~v~~~~~------~~~~~lvmE~~~g~~L~~-l~~------------~~~~~i~~qi~~~l~~lH~~---giiHr 217 (282)
T 1zar_A 163 G---LAVPKVYA------WEGNAVLMELIDAKELYR-VRV------------ENPDEVLDMILEEVAKFYHR---GIVHG 217 (282)
T ss_dssp T---SSSCCEEE------EETTEEEEECCCCEEGGG-CCC------------SCHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred C---CCcCeEEe------ccceEEEEEecCCCcHHH-cch------------hhHHHHHHHHHHHHHHHHHC---CCEeC
Confidence 4 55555432 134599999999999998 421 12456999999999999999 99999
Q ss_pred cCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCccCccccC
Q 004218 590 DLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYIPPEYGL 644 (767)
Q Consensus 590 Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 644 (767)
||||+||+++ ++.+||+|||+|+. +..+.|||++.
T Consensus 218 Dlkp~NILl~-~~~vkl~DFG~a~~-------------------~~~~~a~e~l~ 252 (282)
T 1zar_A 218 DLSQYNVLVS-EEGIWIIDFPQSVE-------------------VGEEGWREILE 252 (282)
T ss_dssp CCSTTSEEEE-TTEEEECCCTTCEE-------------------TTSTTHHHHHH
T ss_pred CCCHHHEEEE-CCcEEEEECCCCeE-------------------CCCCCHHHHHH
Confidence 9999999999 99999999999963 34578899764
No 344
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.8e-22 Score=207.46 Aligned_cols=194 Identities=24% Similarity=0.347 Sum_probs=100.1
Q ss_pred hhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCc
Q 004218 126 GNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLN 205 (767)
Q Consensus 126 ~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 205 (767)
.++.+ |++|++++|++.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|++++. + .+..+++|+
T Consensus 38 ~~l~~-L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDG-ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIK 110 (308)
T ss_dssp HHHHT-CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCC
T ss_pred HHcCC-cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCC
Confidence 34444 6666666666552 23 35556666666666666654322 56666666666666666532 2 455666666
Q ss_pred eeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCC
Q 004218 206 QIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSAN 285 (767)
Q Consensus 206 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 285 (767)
+|+|++|++++. + .+..+++|++|++++|.+++..+ ++.+++|+.|++++|
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~---------------------------l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP---------------------------LAGLTNLQYLSIGNA 161 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG---------------------------GGGCTTCCEEECCSS
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc---------------------------ccCCCCccEEEccCC
Confidence 666666666542 2 25566666666666665552211 333444444455544
Q ss_pred CCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcC
Q 004218 286 GLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEG 361 (767)
Q Consensus 286 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 361 (767)
.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|+|++|++++.. .+..+++|+.|++++|++++
T Consensus 162 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 162 QVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 4443222 4444555555555555443222 444555555555555554332 14455555555555555544
No 345
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.2e-23 Score=219.57 Aligned_cols=253 Identities=16% Similarity=0.220 Sum_probs=194.6
Q ss_pred ccEEeCCCCeeeecCCCccccCC--CCCcEEEccCCcccccCCccccCCCCCCEEEcccccCccc-CCccCCCCCCCcEE
Q 004218 4 LVYLGLASNQLWGEIPYDVGDKL--PNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGT-VPPGLGNLPFLKMY 80 (767)
Q Consensus 4 L~~L~l~~n~l~~~ip~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L 80 (767)
++.||+++|++.. . .+..+ ++++.|++++|.+.+..+. +.++++|++|+|++|.+++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~~---~-~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLHP---D-VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCCH---H-HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCCH---H-HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 6789999988762 2 22345 7899999999999876665 66789999999999998765 77778889999999
Q ss_pred eecCccccCCCCCCccccccccCCCCCCEEECcCC-cceee-cCchhhhhccccCeEEccCC-ccccc-CCccccCCC-C
Q 004218 81 NIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGN-QFEGE-IPESIGNLSNVLSKLYMGGN-RFYGK-IPTSIGRLR-S 155 (767)
Q Consensus 81 ~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~~L~~L~l~~n-~i~~~-~~~~l~~l~-~ 155 (767)
++++|.+.. ..+..+..+++|++|++++| .+++. ++..+..+++ |++|++++| ++++. ++..+..++ +
T Consensus 124 ~L~~~~l~~------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 124 SLEGLRLSD------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR-LDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp ECTTCBCCH------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT-CCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred eCcCcccCH------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC-CCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 999998753 45667788899999999999 67753 6666778887 999999999 88754 567788888 9
Q ss_pred CCEEECcCC--cCc-ccCccccCCCCCCCEEEccCCc-cccccCcCcccCCCCceeeCCCCc-CCCCCcccccCcccccc
Q 004218 156 LTLLNLSYN--SIS-GEILTEIGQLQELQSLDLAGNQ-ISGSIPNTLGNLKKLNQIDLSGNE-LASEIPTSFGNFQNLLS 230 (767)
Q Consensus 156 L~~L~l~~n--~i~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 230 (767)
|++|++++| .++ +..+..+..+++|++|++++|. +++..+..+..+++|++|+|++|. +.......+..+++|+.
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 999999999 454 3456667788999999999998 776777788889999999999995 32222225778899999
Q ss_pred ccccCcccCCCCChhhc-ccccccceeecccccCCCCCchhhcC
Q 004218 231 IDLSNNKLNGNIPKEIL-SLSSLTTIVNLSKNFLDGTLPEEIGM 273 (767)
Q Consensus 231 L~l~~n~l~~~~~~~~~-~l~~l~~~l~l~~n~l~~~~~~~~~~ 273 (767)
|++++| ++......+. .++.+ ++++|.+++..|..++.
T Consensus 277 L~l~~~-i~~~~~~~l~~~l~~L----~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 277 LQVFGI-VPDGTLQLLKEALPHL----QINCSHFTTIARPTIGN 315 (336)
T ss_dssp EECTTS-SCTTCHHHHHHHSTTS----EESCCCSCCTTCSSCSS
T ss_pred EeccCc-cCHHHHHHHHhhCcce----EEecccCccccCCcccc
Confidence 999998 5533333332 24433 78999999888877664
No 346
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=8.7e-22 Score=197.65 Aligned_cols=181 Identities=20% Similarity=0.263 Sum_probs=128.4
Q ss_pred CCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCcccccccccc
Q 004218 155 SLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLS 234 (767)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 234 (767)
+.++++++++.++ .+|..+. ++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567778877777 4454443 577778888887777666677777778888887777777667777777777777777
Q ss_pred CcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCC
Q 004218 235 NNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGP 314 (767)
Q Consensus 235 ~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 314 (767)
+|++++. .+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++.
T Consensus 92 ~n~l~~~-------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 92 NNQLASL-------------------------PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCCCC-------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccccc-------------------------ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 7776633 334455566677777777777766666667777777777777777766
Q ss_pred CCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcC
Q 004218 315 IPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVV 363 (767)
Q Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 363 (767)
.+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 6666777777777777777777666666777777777777777777653
No 347
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.7e-21 Score=195.53 Aligned_cols=179 Identities=21% Similarity=0.274 Sum_probs=119.4
Q ss_pred ccEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeec
Q 004218 4 LVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIG 83 (767)
Q Consensus 4 L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 83 (767)
.+++++++++++ .+|..+. +++++|+|++|++.+..+..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456677777776 6666554 366677777777766556666666677777777666665555555556666666655
Q ss_pred CccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcC
Q 004218 84 FNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSY 163 (767)
Q Consensus 84 ~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 163 (767)
+|++. +..+..+..+++ |++|+|++|++++..+..|..+++|++|+|++
T Consensus 92 ~n~l~------------------------------~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 92 NNQLA------------------------------SLPLGVFDHLTQ-LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp TSCCC------------------------------CCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCccc------------------------------ccChhHhcccCC-CCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence 55554 333344455555 66666666666655555667777777777777
Q ss_pred CcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCC
Q 004218 164 NSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASE 217 (767)
Q Consensus 164 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 217 (767)
|+|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus 141 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 777766666677777777777777777766666777777888888888877653
No 348
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.9e-21 Score=205.42 Aligned_cols=241 Identities=17% Similarity=0.202 Sum_probs=125.8
Q ss_pred EEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccC-ccccCCCCCCCE-EEcc
Q 004218 109 FLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEI-LTEIGQLQELQS-LDLA 186 (767)
Q Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~-L~L~ 186 (767)
+++.++++++ .+|..+ +.++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+ +.+|.++++|++ +.++
T Consensus 13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4455555555 445433 122666666666666444455666666666666666654322 334555655543 4444
Q ss_pred CCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccC-cccCCCCChhhcccccccceeecccccCCC
Q 004218 187 GNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSN-NKLNGNIPKEILSLSSLTTIVNLSKNFLDG 265 (767)
Q Consensus 187 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~ 265 (767)
.|++....|..|..+++|++|++++|+++...+..+....++..|++.+ +++. .
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-------------------------~ 143 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-------------------------T 143 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-------------------------E
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-------------------------c
Confidence 5666655555666666666666666666554444444445555555543 2333 2
Q ss_pred CCchhhcCCC-ceeEEEccCCCCCCCCCcccccCcccceeeccC-ccccCCCCchhhccCCceEEEcCCcccCCCCCccc
Q 004218 266 TLPEEIGMLG-NVVTIDLSANGLSGNLPNSFKNCKSLEKLLMAN-NKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDL 343 (767)
Q Consensus 266 ~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (767)
..+..|..+. .++.|++++|+|+.+.+..| ...+|+.|++++ |.++.+.++.|..+++|+.|||++|+|+...+..+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 2222333332 45666666666664433333 345666666653 45554444556667777777777777764333333
Q ss_pred cccccCceEeccCC-cCcCcCCCCccccccccccccCCcCcc
Q 004218 344 QNLRALRSLNLTFN-NLEGVVPREGIFRHTSMVHLEGNPKLC 384 (767)
Q Consensus 344 ~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~l~~Np~~c 384 (767)
..+ +.|.+.++ .++.. |....++++..+.+ .||+.|
T Consensus 223 ~~L---~~L~~l~~~~l~~l-P~l~~l~~L~~l~l-~~~~~c 259 (350)
T 4ay9_X 223 ENL---KKLRARSTYNLKKL-PTLEKLVALMEASL-TYPSHC 259 (350)
T ss_dssp TTC---CEEECTTCTTCCCC-CCTTTCCSCCEEEC-SCHHHH
T ss_pred ccc---hHhhhccCCCcCcC-CCchhCcChhhCcC-CCCccc
Confidence 333 33333322 33333 33444555555555 356666
No 349
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=2.2e-21 Score=204.86 Aligned_cols=218 Identities=16% Similarity=0.152 Sum_probs=168.5
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccC-cCcccCCCCce-eeC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIP-NTLGNLKKLNQ-IDL 209 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~-L~L 209 (767)
-+++++++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.++++|.+ +.+
T Consensus 11 ~~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 11 NRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TTEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CCEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 367889999998 677766 3689999999999997777789999999999999999865554 57888888776 567
Q ss_pred CCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccC-CCCC
Q 004218 210 SGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSA-NGLS 288 (767)
Q Consensus 210 ~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~-n~l~ 288 (767)
+.|+++.+.|+.|..+++|++|++++|++....+. .+....++..|++++ |.+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~-------------------------~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-------------------------HKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC-------------------------TTCCBSSCEEEEEESCTTCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCch-------------------------hhcccchhhhhhhccccccc
Confidence 78999888888999999999999999988732221 222344677888865 5777
Q ss_pred CCCCcccccCc-ccceeeccCccccCCCCchhhccCCceEEEcCC-cccCCCCCccccccccCceEeccCCcCcCcCCCC
Q 004218 289 GNLPNSFKNCK-SLEKLLMANNKFSGPIPNILAELKGLEVLDLSS-NKLSGSIPSDLQNLRALRSLNLTFNNLEGVVPRE 366 (767)
Q Consensus 289 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 366 (767)
.+.+..|..+. .++.|++++|+|+.+.+..| ...+|+.|++++ |.++...+..|..+++|+.|++++|+++.+++..
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~ 221 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred cccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh
Confidence 67777787775 68999999999995544444 556799999985 6677555567899999999999999999887643
Q ss_pred ccccccccccccCC
Q 004218 367 GIFRHTSMVHLEGN 380 (767)
Q Consensus 367 ~~~~~~~~~~l~~N 380 (767)
+.++..+...++
T Consensus 222 --~~~L~~L~~l~~ 233 (350)
T 4ay9_X 222 --LENLKKLRARST 233 (350)
T ss_dssp --CTTCCEEECTTC
T ss_pred --hccchHhhhccC
Confidence 555555554443
No 350
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.4e-20 Score=208.81 Aligned_cols=190 Identities=19% Similarity=0.286 Sum_probs=133.4
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCC
Q 004218 28 NLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRL 107 (767)
Q Consensus 28 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L 107 (767)
+|+.|+|++|++.+ +|..+ .++|++|+|++|.|+ .+| ..+++|++|+|++|++++.+ . +.+ +|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip-------~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLP-------E-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCC-------C-CCT--TC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcc-------h-hhc--CC
Confidence 67777777777764 55544 266777777777776 555 34567777777777766432 1 222 67
Q ss_pred CEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccC
Q 004218 108 NFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAG 187 (767)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (767)
++|+|++|++++ +|. .+++ |++|+|++|++++ +|. .+++|++|+|++|+|++ +|. |. ++|++|+|++
T Consensus 123 ~~L~Ls~N~l~~-lp~---~l~~-L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 123 KHLDVDNNQLTM-LPE---LPAL-LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CEEECCSSCCSC-CCC---CCTT-CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred CEEECCCCcCCC-CCC---cCcc-ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 777777777774 555 3455 8888888888875 454 46788888888888885 455 55 7888888888
Q ss_pred CccccccCcCcccCCCC-------ceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccc
Q 004218 188 NQISGSIPNTLGNLKKL-------NQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSL 252 (767)
Q Consensus 188 n~i~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l 252 (767)
|+|+ .+|. |.. +| +.|+|++|+|+. +|..+..+++|+.|+|++|++++.+|..+..+...
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~ 256 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHS
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcC
Confidence 8888 5565 543 66 889999999984 67777778999999999999988888887776553
No 351
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3e-20 Score=180.74 Aligned_cols=181 Identities=16% Similarity=0.130 Sum_probs=109.0
Q ss_pred cEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecC
Q 004218 5 VYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGF 84 (767)
Q Consensus 5 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 84 (767)
+.+++++++++ .+|..+. ++|++|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45666777776 6665543 3667777777777755555566777777777777776644444455666666666666
Q ss_pred ccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCC
Q 004218 85 NKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYN 164 (767)
Q Consensus 85 n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 164 (767)
|++.. ..+..+..+++ |++|++++|++++..+..|..+++|++|++++|
T Consensus 86 n~l~~------------------------------~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 86 NQLQS------------------------------LPNGVFDKLTQ-LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp SCCCC------------------------------CCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCc------------------------------cCHhHhcCccC-CCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 65543 22333444444 555555555555444445566666666666666
Q ss_pred cCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccc
Q 004218 165 SISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQN 227 (767)
Q Consensus 165 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 227 (767)
.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|++++.+|..++.++.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 6665555556666666666666665542 3346666677777776666666665544
No 352
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.2e-20 Score=179.63 Aligned_cols=180 Identities=22% Similarity=0.258 Sum_probs=96.4
Q ss_pred CeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCC
Q 004218 133 SKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGN 212 (767)
Q Consensus 133 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 212 (767)
+.+++++++++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555554 233322 245666666666666544445556666666666666666444445556666666666666
Q ss_pred cCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCC
Q 004218 213 ELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLP 292 (767)
Q Consensus 213 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 292 (767)
++++..+..|..+++|++|++++|++++..+ ..+..+++|+.|+|++|.+++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPD-------------------------GVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------------------TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCH-------------------------hHhccCCcCCEEECCCCccceeCH
Confidence 6665555555566666666666655553222 223344455555555555554444
Q ss_pred cccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccc
Q 004218 293 NSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLR 347 (767)
Q Consensus 293 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (767)
..+..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+|..++.++
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 445555555555555555442 233455555666666666665555444
No 353
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=5.9e-20 Score=203.73 Aligned_cols=189 Identities=22% Similarity=0.341 Sum_probs=155.2
Q ss_pred CCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccc
Q 004218 52 NIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNV 131 (767)
Q Consensus 52 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~ 131 (767)
+|+.|+|++|.+++ +|..+. ++|++|+|++|+++..| ..+++|++|+|++|++++ +|. +.. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip----------~~l~~L~~L~Ls~N~l~~-ip~-l~~--~- 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISLP----------ELPASLEYLDACDNRLST-LPE-LPA--S- 121 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCCC----------CCCTTCCEEECCSSCCSC-CCC-CCT--T-
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcccc----------cccCCCCEEEccCCCCCC-cch-hhc--C-
Confidence 89999999999985 777663 78999999999987543 346899999999999995 777 555 4
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
|++|+|++|++++ +|. .+++|+.|+|++|.|++ +|. .+++|++|+|++|+|++ +|. |. ++|+.|+|++
T Consensus 122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 9999999999986 565 67899999999999996 444 57899999999999995 666 66 8999999999
Q ss_pred CcCCCCCcccccCcccc-------ccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCc
Q 004218 212 NELASEIPTSFGNFQNL-------LSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGN 276 (767)
Q Consensus 212 N~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~ 276 (767)
|+|+ .+|. |.. +| +.|+|++|+|+ .+|..+..+++|. .+++++|.+++..|..++.++.
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC-TIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTE-EEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCC-EEEeeCCcCCCcCHHHHHHhhc
Confidence 9998 4555 554 77 99999999999 6888888899884 5599999999888888876543
No 354
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=3.7e-20 Score=189.73 Aligned_cols=188 Identities=26% Similarity=0.346 Sum_probs=112.7
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCE
Q 004218 30 LGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNF 109 (767)
Q Consensus 30 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~ 109 (767)
..+.+..+.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|++|++++|++.+. +. +.++++|++
T Consensus 27 ~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-------~~-l~~l~~L~~ 94 (291)
T 1h6t_A 27 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-------KP-LANLKNLGW 94 (291)
T ss_dssp HHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCE
T ss_pred HHHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-------cc-cccCCCCCE
Confidence 334455555543222 3455666666666666652 22 355566666666666665432 11 555666666
Q ss_pred EECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCc
Q 004218 110 LAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQ 189 (767)
Q Consensus 110 L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 189 (767)
|++++|++++ ++ .+..+++ |++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|+
T Consensus 95 L~l~~n~l~~-~~-~l~~l~~-L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 95 LFLDENKVKD-LS-SLKDLKK-LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp EECCSSCCCC-GG-GGTTCTT-CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred EECCCCcCCC-Ch-hhccCCC-CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc
Confidence 6666666653 22 3555555 66666666666632 3466667777777777777643 456667777777777777
Q ss_pred cccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCC
Q 004218 190 ISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNG 240 (767)
Q Consensus 190 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (767)
+++..+ +..+++|+.|+|++|.++.. + .+..+++|+.|++++|++..
T Consensus 168 l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 168 ISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 764433 66677777777777777642 3 36677777777777777663
No 355
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=4.2e-20 Score=207.42 Aligned_cols=169 Identities=28% Similarity=0.371 Sum_probs=77.3
Q ss_pred CCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCC
Q 004218 26 LPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNST 105 (767)
Q Consensus 26 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 105 (767)
|++|+.|++++|.+. .+| .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+... ..+..++
T Consensus 42 L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~ 109 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--------SSLKDLK 109 (605)
T ss_dssp HTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------TTSTTCT
T ss_pred CCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--------hhhccCC
Confidence 445555555555554 233 24555555555555555553222 44555555555555554321 1344445
Q ss_pred CCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEc
Q 004218 106 RLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDL 185 (767)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 185 (767)
+|+.|+|++|++++ + +.+..+++ |+.|+|++|++++. ..+..+++|+.|+|++|.|.+..+ +..+++|++|+|
T Consensus 110 ~L~~L~Ls~N~l~~-l-~~l~~l~~-L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 110 KLKSLSLEHNGISD-I-NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TCCEEECTTSCCCC-C-GGGGGCTT-CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEEecCCCCCC-C-ccccCCCc-cCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 55555555555442 1 23444444 44444444444432 334444444444444444443322 444444444444
Q ss_pred cCCccccccCcCcccCCCCceeeCCCCcCC
Q 004218 186 AGNQISGSIPNTLGNLKKLNQIDLSGNELA 215 (767)
Q Consensus 186 ~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 215 (767)
++|+|++. ..+..+++|+.|+|++|++.
T Consensus 183 s~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 183 SKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred cCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 44444422 12444444444444444444
No 356
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2.3e-20 Score=209.47 Aligned_cols=198 Identities=25% Similarity=0.324 Sum_probs=165.8
Q ss_pred CCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCC
Q 004218 27 PNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTR 106 (767)
Q Consensus 27 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~ 106 (767)
.++..++++.+.+.+.++ +..+++|+.|++++|.+. .++ .++.+++|+.|+|++|.+... +. +..+++
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~-------~~-l~~l~~ 88 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI-------KP-LTNLKN 88 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCC-------GG-GGGCTT
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCC-------hh-hccCCC
Confidence 356777888888886544 678999999999999998 444 689999999999999998743 22 888999
Q ss_pred CCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEcc
Q 004218 107 LNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLA 186 (767)
Q Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (767)
|+.|+|++|++++ +| .+..+++ |++|+|++|++... ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|+
T Consensus 89 L~~L~Ls~N~l~~-l~-~l~~l~~-L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 89 LGWLFLDENKIKD-LS-SLKDLKK-LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp CCEEECCSSCCCC-CT-TSTTCTT-CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CCEEECcCCCCCC-Ch-hhccCCC-CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 9999999999984 44 6888888 99999999999853 4688999999999999999964 678999999999999
Q ss_pred CCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhc
Q 004218 187 GNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEIL 247 (767)
Q Consensus 187 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 247 (767)
+|.|.+..| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++.+.....+.
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccc
Confidence 999997656 89999999999999999864 4688999999999999999854333333
No 357
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.5e-19 Score=185.25 Aligned_cols=188 Identities=26% Similarity=0.356 Sum_probs=154.2
Q ss_pred EeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCcc
Q 004218 7 LGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNK 86 (767)
Q Consensus 7 L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 86 (767)
+.+..+.+++.++. ..+++|++|++++|.+.. ++. +..+++|++|+|++|.+++..+ ++.+++|++|++++|+
T Consensus 29 ~~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 29 DNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHTTCSCTTSEECH---HHHHTCCEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHhcCCCcccccch---hhcCcccEEEccCCCccc-Chh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 45566666532222 247789999999999984 554 8899999999999999985443 8899999999999999
Q ss_pred ccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcC
Q 004218 87 IVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSI 166 (767)
Q Consensus 87 l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i 166 (767)
+.. +..+.++++|++|++++|++++. ..+..+++ |++|++++|++++. ..+..+++|++|++++|.+
T Consensus 102 l~~--------~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 102 VKD--------LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp CCC--------GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred CCC--------ChhhccCCCCCEEECCCCcCCCC--hhhcCCCC-CCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 863 34588899999999999999853 56888888 99999999999854 6789999999999999999
Q ss_pred cccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCC
Q 004218 167 SGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEI 218 (767)
Q Consensus 167 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 218 (767)
++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++...
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 96544 8999999999999999985 44 4889999999999999997543
No 358
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=3e-19 Score=174.79 Aligned_cols=152 Identities=22% Similarity=0.329 Sum_probs=87.5
Q ss_pred CEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCc
Q 004218 157 TLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNN 236 (767)
Q Consensus 157 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 236 (767)
+.++++++.++ .+|..+. ++|++|+|++|+|++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666665 3343332 45666666666666555555666666666666666665555555555555555555555
Q ss_pred ccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCC
Q 004218 237 KLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIP 316 (767)
Q Consensus 237 ~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 316 (767)
+++. ..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..+
T Consensus 91 ~l~~-------------------------l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 91 KITE-------------------------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CCCC-------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCc-------------------------cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 5441 222334455666666666666666666666666666666666666665555
Q ss_pred chhhccCCceEEEcCCcccC
Q 004218 317 NILAELKGLEVLDLSSNKLS 336 (767)
Q Consensus 317 ~~~~~l~~L~~L~Ls~N~l~ 336 (767)
..|..+++|+.|+|++|++.
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEE
T ss_pred HHHhCCCCCCEEEeCCCCcC
Confidence 55555666666666666554
No 359
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4.6e-19 Score=187.89 Aligned_cols=177 Identities=20% Similarity=0.189 Sum_probs=118.4
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCC-CCCCCcEEeecCccccCCCCCCccccccccCCCCCC
Q 004218 30 LGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLG-NLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLN 108 (767)
Q Consensus 30 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~ 108 (767)
+.++++++++. .+|..+. +.+++|+|++|.|++..+..+. .+++|++|+|++|++...+ +..+.++++|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~------~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS------SEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC------TTTTTTCTTCC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC------hhhccCCCCCC
Confidence 34555555555 3444332 2355555555555544444444 5556666666666554321 12355566666
Q ss_pred EEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCcccc---CCCCCCCEEEc
Q 004218 109 FLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEI---GQLQELQSLDL 185 (767)
Q Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~L 185 (767)
+|+|++|+++...+..+..+.+ |++|+|++|+|+...+..|.++++|++|+|++|.|+...+..| ..+++|++|+|
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQA-LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred EEECCCCcCCcCCHHHhCCCcC-CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 6666666666555566777776 8888888888887778888888888888888888886555555 56889999999
Q ss_pred cCCccccccCcCcccCCC--CceeeCCCCcCCC
Q 004218 186 AGNQISGSIPNTLGNLKK--LNQIDLSGNELAS 216 (767)
Q Consensus 186 ~~n~i~~~~~~~~~~l~~--L~~L~L~~N~l~~ 216 (767)
++|+|+...+..|..++. |+.|+|++|++..
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 999998655567777776 4889999999864
No 360
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=5.7e-19 Score=187.15 Aligned_cols=179 Identities=22% Similarity=0.264 Sum_probs=128.5
Q ss_pred CEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCcccc-CCCCCCEEECcCCcCcccCccccCCCCCCCEEEcc
Q 004218 108 NFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIG-RLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLA 186 (767)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (767)
+.+++++++++ .+|..+.. .++.|+|++|+|++..+..|. ++++|++|+|++|+|+++.+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~~---~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLPS---YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCCT---TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCCC---CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57888888887 56665432 377888888888877777776 78888888888888887777778888888888888
Q ss_pred CCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCC
Q 004218 187 GNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGT 266 (767)
Q Consensus 187 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~ 266 (767)
+|+|+...+..|..+++|+.|+|++|+|+...+..|..+++|+.|+|++|++++ +|..+..
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~------------------ 157 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIK------------------ 157 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhc------------------
Confidence 888886666677888888888888888877777778888888888888887773 2221100
Q ss_pred CchhhcCCCceeEEEccCCCCCCCCCcccccCcc--cceeeccCcccc
Q 004218 267 LPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKS--LEKLLMANNKFS 312 (767)
Q Consensus 267 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~ 312 (767)
.+..+++|+.|+|++|+|++..+..+..++. |+.|+|++|++.
T Consensus 158 ---~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 ---DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ---CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 0134667777777777777665566666665 366777777765
No 361
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.9e-18 Score=169.01 Aligned_cols=134 Identities=22% Similarity=0.270 Sum_probs=84.9
Q ss_pred CCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEE
Q 004218 105 TRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLD 184 (767)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 184 (767)
++|+.|++++|++++..+..+..+++ |++|+|++|++++..|..|.++++|++|+|++|.|+.+.+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~-L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKK-LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTT-CCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCC-CCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 34555555555555444445555555 66666666666655566666666666666666666655555566666666666
Q ss_pred ccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccC
Q 004218 185 LAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 185 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (767)
|++|+|.+..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6666666665666666666666666666666655556666666666666666665
No 362
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.77 E-value=2.1e-19 Score=180.45 Aligned_cols=136 Identities=24% Similarity=0.254 Sum_probs=105.2
Q ss_pred CCCCCccccccceEEEEEEe-CCCcE--EEEEEeeccCCcc------------------------hhhHHHHHHHHhcCC
Q 004218 457 FSHENLIGSGSFGSVYKGYL-REGIS--VAVKVLDIESTGT------------------------WKSFFAECEALRNTR 509 (767)
Q Consensus 457 ~~~~~~lg~G~~g~V~~~~~-~~~~~--vavK~~~~~~~~~------------------------~~~~~~e~~~l~~l~ 509 (767)
|++.+.||+|+||.||+|.+ .+|+. ||||+++...... ...+.+|+++++.+.
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999998 67888 9999875331110 125788999999998
Q ss_pred CCCc--eeEEeeeecCCcccceeeEEEEeecCC-C----ChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-hC
Q 004218 510 HRNL--VKLITSCSSLDFKNMEFLALVYEFLGN-G----SLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLH-ND 581 (767)
Q Consensus 510 h~ni--v~~~~~~~~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH-~~ 581 (767)
|+++ ..++++ ...++||||+++ | +|.++... .++.++..++.|++.|+.||| +.
T Consensus 129 ~~~i~~p~~~~~---------~~~~lVmE~~g~~g~~~~~L~~~~~~---------~~~~~~~~i~~qi~~~l~~lH~~~ 190 (258)
T 1zth_A 129 EAGVSVPQPYTY---------MKNVLLMEFIGEDELPAPTLVELGRE---------LKELDVEGIFNDVVENVKRLYQEA 190 (258)
T ss_dssp HTTCCCCCEEEE---------ETTEEEEECCEETTEECCBHHHHGGG---------GGGSCHHHHHHHHHHHHHHHHHTS
T ss_pred hCCCCCCeEEEc---------CCCEEEEEecCCCCCccccHHHHhhc---------cChHHHHHHHHHHHHHHHHHHHHC
Confidence 7754 334432 234899999942 4 67666432 223457889999999999999 88
Q ss_pred CCCCeEeecCCCCCeeeCCCCceEEccccchhhh
Q 004218 582 CEVPIVHCDLKPGNILLDEDMTAKVGDFGLARSL 615 (767)
Q Consensus 582 ~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~ 615 (767)
||+||||||+|||++. .++|+|||+|...
T Consensus 191 ---givHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 191 ---ELVHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp ---CEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred ---CEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 9999999999999998 9999999999643
No 363
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=168.78 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=98.1
Q ss_pred cEEeCCCCeeeecCCCccccCCCCCcEEEccCCcccccCC-ccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeec
Q 004218 5 VYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIP-GSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIG 83 (767)
Q Consensus 5 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 83 (767)
+++++++|+++ .+|..+.. .+++|+|++|++.+..| ..|..+++|++|+|++|.|++..+..|..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~~---~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCCT---TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCCC---CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 45667777766 66665532 45666777776665433 346666666666666666665444455555555555555
Q ss_pred CccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcC
Q 004218 84 FNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSY 163 (767)
Q Consensus 84 ~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 163 (767)
+|++ ++..+..+..+++ |++|+|++|++++..|..|..+++|++|+|++
T Consensus 90 ~N~l------------------------------~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 90 SNRL------------------------------ENVQHKMFKGLES-LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp SSCC------------------------------CCCCGGGGTTCSS-CCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred CCcc------------------------------CccCHhHhcCCcC-CCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 5554 4344444555555 66677777777666667777777777777777
Q ss_pred CcCcccCccccCCCCCCCEEEccCCcccc
Q 004218 164 NSISGEILTEIGQLQELQSLDLAGNQISG 192 (767)
Q Consensus 164 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 192 (767)
|+|++..|..|..+++|++|+|++|.+..
T Consensus 139 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 139 NQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77776667777777777777777777763
No 364
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=167.96 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=97.8
Q ss_pred CCEEECcCCcceeecC-chhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEc
Q 004218 107 LNFLAFDGNQFEGEIP-ESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDL 185 (767)
Q Consensus 107 L~~L~l~~n~l~~~~~-~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 185 (767)
+++|+|++|++++..+ ..+..+++ |++|+|++|+|++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQ-LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCC-CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 4566666666664433 33566666 777777777777666667777777777777777777766667777777888888
Q ss_pred cCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCC
Q 004218 186 AGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGN 241 (767)
Q Consensus 186 ~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (767)
++|+|++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.+.+.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 88877777677777777888888888888777777777778888888888777643
No 365
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=3.6e-21 Score=214.84 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=98.5
Q ss_pred cccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcc-------------cccCCccccCCCCCCEEE-CcCCc
Q 004218 100 SLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRF-------------YGKIPTSIGRLRSLTLLN-LSYNS 165 (767)
Q Consensus 100 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i-------------~~~~~~~l~~l~~L~~L~-l~~n~ 165 (767)
.+..++.|+.|+|++|+++ .+|..++++++ |++|++++|.. .+..|..++++++|+.|+ ++.|.
T Consensus 344 d~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 344 DSATDEQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp CCSTTTTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccccCccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence 3466788888888888887 78888888888 88888877652 223333333334444443 33322
Q ss_pred CcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChh
Q 004218 166 ISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKE 245 (767)
Q Consensus 166 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 245 (767)
+. +|+.+.+++|.+....+ ..|+.|+|++|.+++ +|. |+.+++|+.|+|++|+++ .
T Consensus 422 ~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~---- 477 (567)
T 1dce_A 422 LD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A---- 477 (567)
T ss_dssp HH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C----
T ss_pred cc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c----
Confidence 21 12222333333331111 124555555555543 233 445555555555555444 2
Q ss_pred hcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCC-CchhhccCC
Q 004218 246 ILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPI-PNILAELKG 324 (767)
Q Consensus 246 ~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 324 (767)
+|..++.+++|+.|+|++|.|++ +| .++.+++|+.|+|++|+|++.. |..+..+++
T Consensus 478 ---------------------lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 478 ---------------------LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp ---------------------CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred ---------------------cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence 23334444455555555555553 33 4555555555555555555443 555555555
Q ss_pred ceEEEcCCcccCCC
Q 004218 325 LEVLDLSSNKLSGS 338 (767)
Q Consensus 325 L~~L~Ls~N~l~~~ 338 (767)
|+.|+|++|++++.
T Consensus 535 L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 535 LVLLNLQGNSLCQE 548 (567)
T ss_dssp CCEEECTTSGGGGS
T ss_pred CCEEEecCCcCCCC
Confidence 55555555555543
No 366
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.2e-18 Score=167.80 Aligned_cols=105 Identities=23% Similarity=0.268 Sum_probs=52.6
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
.+.+++++++++ .+|..+. ++|++|+|++|.|++..+..|..+++|++|+|++|+|....+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 344555555554 3343332 4555555555555554455555555555555555555543334445555555555555
Q ss_pred CcCCCCCcccccCccccccccccCcccC
Q 004218 212 NELASEIPTSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 212 N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (767)
|++++..+..|..+++|+.|+|++|+++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc
Confidence 5555444444444444444444444443
No 367
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=4.1e-19 Score=178.97 Aligned_cols=168 Identities=26% Similarity=0.401 Sum_probs=94.7
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCC
Q 004218 28 NLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRL 107 (767)
Q Consensus 28 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L 107 (767)
+++.+++++|.+.+ ++ .+..+++|++|++++|.++ .++ .++.+++|++|+|++|++.+. +. +.++++|
T Consensus 20 ~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-------~~-l~~l~~L 87 (263)
T 1xeu_A 20 NAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-------SP-LKDLTKL 87 (263)
T ss_dssp HHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-------GG-GTTCSSC
T ss_pred HHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-------hh-hccCCCC
Confidence 44555555555553 22 3555555566666665555 333 455555566666665555422 11 5555556
Q ss_pred CEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccC
Q 004218 108 NFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAG 187 (767)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (767)
++|++++|++++ +|.... .+ |++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++
T Consensus 88 ~~L~L~~N~l~~-l~~~~~--~~-L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 88 EELSVNRNRLKN-LNGIPS--AC-LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHG 159 (263)
T ss_dssp CEEECCSSCCSC-CTTCCC--SS-CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTT
T ss_pred CEEECCCCccCC-cCcccc--Cc-ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCC
Confidence 666666666553 232221 33 66666666666532 2466666666666666666643 2566666666666666
Q ss_pred CccccccCcCcccCCCCceeeCCCCcCCCC
Q 004218 188 NQISGSIPNTLGNLKKLNQIDLSGNELASE 217 (767)
Q Consensus 188 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 217 (767)
|++++. ..+..+++|+.|++++|++...
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 666644 4566666666666666666543
No 368
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.5e-18 Score=166.85 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=84.8
Q ss_pred cccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchh
Q 004218 46 SLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESI 125 (767)
Q Consensus 46 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 125 (767)
....+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|++++..+..+
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--------NYNPISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--------CCGGGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--------cchhhhcCCCCCEEEeECCccCcccChhh
Confidence 3467788888888888887 555 5777788888888877553 22345555556666666665554445555
Q ss_pred hhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCc-CcccCccccCCCCCCCEEEccCCccccccCcCcccCCCC
Q 004218 126 GNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNS-ISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKL 204 (767)
Q Consensus 126 ~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 204 (767)
..+++ |++|++++|++++..+..+..+++|++|++++|. ++. .+ .+..+++|++|++++|++++ ++ .+..+++|
T Consensus 109 ~~l~~-L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L 183 (197)
T 4ezg_A 109 SGLTS-LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKL 183 (197)
T ss_dssp TTCTT-CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSC
T ss_pred cCCCC-CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCC
Confidence 55544 5555555555554444445555555555555554 332 22 34444455555555554442 22 34444444
Q ss_pred ceeeCCCCcC
Q 004218 205 NQIDLSGNEL 214 (767)
Q Consensus 205 ~~L~L~~N~l 214 (767)
++|++++|++
T Consensus 184 ~~L~l~~N~i 193 (197)
T 4ezg_A 184 NQLYAFSQTI 193 (197)
T ss_dssp CEEEECBC--
T ss_pred CEEEeeCccc
Confidence 4444444444
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.5e-19 Score=182.06 Aligned_cols=178 Identities=22% Similarity=0.287 Sum_probs=144.5
Q ss_pred cccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCccee
Q 004218 40 TGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEG 119 (767)
Q Consensus 40 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 119 (767)
....|+ ..+.++..+++++|.+++. + .+..+++|++|++++|++... ..+..+++|++|++++|++++
T Consensus 10 ~~~~pd--~~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l--------~~l~~l~~L~~L~L~~N~i~~ 77 (263)
T 1xeu_A 10 NQVFPD--PGLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL--------AGMQFFTNLKELHLSHNQISD 77 (263)
T ss_dssp HHHCCS--HHHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC--------TTGGGCTTCCEEECCSSCCCC
T ss_pred HHhCCC--HHHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc--------hHHhhCCCCCEEECCCCccCC
Confidence 334454 2567778888999999843 3 577889999999999988743 257888999999999999985
Q ss_pred ecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcc
Q 004218 120 EIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLG 199 (767)
Q Consensus 120 ~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 199 (767)
. +. +..+++ |++|++++|++++ ++. +.. ++|++|+|++|++++. ..+..+++|++|+|++|++++. + .+.
T Consensus 78 ~-~~-l~~l~~-L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~ 147 (263)
T 1xeu_A 78 L-SP-LKDLTK-LEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLG 147 (263)
T ss_dssp C-GG-GTTCSS-CCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGG
T ss_pred C-hh-hccCCC-CCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHc
Confidence 4 44 888887 9999999999985 343 333 8999999999999863 4688999999999999999854 3 688
Q ss_pred cCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCC
Q 004218 200 NLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGN 241 (767)
Q Consensus 200 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (767)
.+++|+.|+|++|++++. ..+..+++|+.|++++|.+.+.
T Consensus 148 ~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 899999999999999865 6788999999999999998854
No 370
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=1.6e-20 Score=209.61 Aligned_cols=204 Identities=18% Similarity=0.174 Sum_probs=138.8
Q ss_pred CCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCc-------------ceeecCchhhhhccccCeEE-c
Q 004218 72 GNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQ-------------FEGEIPESIGNLSNVLSKLY-M 137 (767)
Q Consensus 72 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~~L~~L~-l 137 (767)
..+++|+.|+|+.|++. .+|..+.++++|+.|++++|. +.+..|..+..+.+ |+.|+ +
T Consensus 346 ~~~~~L~~L~Ls~n~L~-------~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~-L~~L~~l 417 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST-LKAVDPM 417 (567)
T ss_dssp STTTTSSSCCCCHHHHH-------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHH-HHHHCGG
T ss_pred ccCccceeccCChhhHH-------hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHh-cccCcch
Confidence 34455555555555554 344455555555555554443 45577888888888 99998 6
Q ss_pred cCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCC
Q 004218 138 GGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASE 217 (767)
Q Consensus 138 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 217 (767)
+.|.+. +|+.+.+++|.++...+ ..|+.|+|++|+|++ +|. |+.+++|+.|+|++|+|+ .
T Consensus 418 ~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 418 RAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp GHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred hhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence 776653 45556677777774322 248888899888884 565 888889999999999888 5
Q ss_pred CcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCC-Ccccc
Q 004218 218 IPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNL-PNSFK 296 (767)
Q Consensus 218 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~ 296 (767)
+|..|+.+++|+.|+|++|++++ +| .++.+++|+.|+|++|.|++.. |..++
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~-lp--------------------------~l~~l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALEN-VD--------------------------GVANLPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC-CG--------------------------GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred cchhhhcCCCCCEEECCCCCCCC-Cc--------------------------ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence 67788888888888888888773 22 3445566777777777777665 77777
Q ss_pred cCcccceeeccCccccCCCCc---hhhccCCceEEEc
Q 004218 297 NCKSLEKLLMANNKFSGPIPN---ILAELKGLEVLDL 330 (767)
Q Consensus 297 ~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L 330 (767)
.+++|+.|+|++|++++..+. .+..+++|+.|++
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 777777777777777755442 2344677777754
No 371
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=8.5e-18 Score=165.62 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=113.8
Q ss_pred CcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCC
Q 004218 77 LKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSL 156 (767)
Q Consensus 77 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L 156 (767)
-+.++.+.+.+...|. .+. ++|++|+|++|++++..|..+..+++ |++|+|++|+++...+..|..+++|
T Consensus 21 ~~~v~c~~~~l~~ip~-------~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~N~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-------GIP--TNAQILYLHDNQITKLEPGVFDSLIN-LKELYLGSNQLGALPVGVFDSLTQL 90 (229)
T ss_dssp TTEEECTTSCCSSCCS-------CCC--TTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCEeEccCCCcCccCC-------CCC--CCCCEEEcCCCccCccCHHHhhCccC-CcEEECCCCCCCCcChhhcccCCCc
Confidence 4456666666554332 121 56777777777777666777777776 8888888888876656667788888
Q ss_pred CEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCc
Q 004218 157 TLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNN 236 (767)
Q Consensus 157 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 236 (767)
++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 88888888888666666778888888888888888 66777788888888888888888766677788888888888888
Q ss_pred ccCCC
Q 004218 237 KLNGN 241 (767)
Q Consensus 237 ~l~~~ 241 (767)
.+.+.
T Consensus 170 ~~~c~ 174 (229)
T 3e6j_A 170 PWDCE 174 (229)
T ss_dssp CBCTT
T ss_pred CccCC
Confidence 87743
No 372
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=4.7e-19 Score=204.22 Aligned_cols=197 Identities=23% Similarity=0.237 Sum_probs=105.5
Q ss_pred CCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhcc
Q 004218 51 TNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSN 130 (767)
Q Consensus 51 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (767)
+.++.|+|++|.+.. .+. ..|+.++|+.|.+. .++++.|.+. ..++.+..+..
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i~--------------------~~~~~~n~~~-~~~~~~~~l~~ 225 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSID--------------------EDDDIENRMV-MPKDSKYDDQL 225 (727)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCccccc--------------------Ccccccccee-cChhhhccCCC
Confidence 456667777776663 222 23455566665543 2445556665 56666777776
Q ss_pred ccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCC
Q 004218 131 VLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLS 210 (767)
Q Consensus 131 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 210 (767)
|+.|+|++|++. .+|..+.++++|++|+|++|.|+ .+|..|..+++|++|+|++|.|+ .+|..|+.+++|++|+|+
T Consensus 226 -L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 226 -WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp -CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred -CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 888888888877 56666667888888888888888 66777888888888888888888 667788888888888888
Q ss_pred CCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCC
Q 004218 211 GNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSAN 285 (767)
Q Consensus 211 ~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 285 (767)
+|.|+ .+|..|+.+++|+.|+|++|.+++.+|..+..+......+++++|.+++.+|. .|..|++++|
T Consensus 302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 88886 45667888888888888888888777777766544433456777777766654 3455666666
No 373
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=6.9e-18 Score=162.22 Aligned_cols=153 Identities=21% Similarity=0.286 Sum_probs=121.7
Q ss_pred CCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCcccc
Q 004218 72 GNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIG 151 (767)
Q Consensus 72 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~ 151 (767)
+.+++|++|++++|.+... + .+..+++|++|++++|.++ .+..+..+++ |++|++++|++++..+..++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-------~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-------T-GIEYAHNIKDLTINNIHAT--NYNPISGLSN-LERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-------T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTT-CCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCccCh-------H-HHhcCCCCCEEEccCCCCC--cchhhhcCCC-CCEEEeECCccCcccChhhc
Confidence 5567889999999888633 2 4777888999999988775 3347777877 89999999988877788888
Q ss_pred CCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCc-cccccCcCcccCCCCceeeCCCCcCCCCCcccccCcccccc
Q 004218 152 RLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQ-ISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLS 230 (767)
Q Consensus 152 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 230 (767)
.+++|++|++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|+++.. + .+..+++|+.
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~ 185 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQ 185 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCE
Confidence 88899999999998887778888888899999999887 66 444 688888899999999888753 3 6788888888
Q ss_pred ccccCcccC
Q 004218 231 IDLSNNKLN 239 (767)
Q Consensus 231 L~l~~n~l~ 239 (767)
|++++|++.
T Consensus 186 L~l~~N~i~ 194 (197)
T 4ezg_A 186 LYAFSQTIG 194 (197)
T ss_dssp EEECBC---
T ss_pred EEeeCcccC
Confidence 888888876
No 374
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.6e-18 Score=199.84 Aligned_cols=182 Identities=25% Similarity=0.304 Sum_probs=83.4
Q ss_pred cCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcc
Q 004218 169 EILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILS 248 (767)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 248 (767)
..+..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.|+ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 33445555555555555555555 44444445555555555555555 44555555555555555555555 44555555
Q ss_pred cccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcc-cceeeccCccccCCCCchhhccCCceE
Q 004218 249 LSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKS-LEKLLMANNKFSGPIPNILAELKGLEV 327 (767)
Q Consensus 249 l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~ 327 (767)
+++| +.|+|++|.|+ .+|..|+.+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|.. |+.
T Consensus 292 l~~L-~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~ 363 (727)
T 4b8c_D 292 CFQL-KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRF 363 (727)
T ss_dssp GTTC-SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred CCCC-CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cce
Confidence 5555 22355555554 44555777777788888888887777766655422 234678888887776653 556
Q ss_pred EEcCCc--------ccCCCCCccccccccCceEeccCCcCcC
Q 004218 328 LDLSSN--------KLSGSIPSDLQNLRALRSLNLTFNNLEG 361 (767)
Q Consensus 328 L~Ls~N--------~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 361 (767)
|+++.| .+.+..+..+..+..+....+++|-+.+
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp --------------------------------------CCCG
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 667666 2333333334445555555666665543
No 375
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=3.5e-17 Score=171.15 Aligned_cols=243 Identities=12% Similarity=0.068 Sum_probs=128.8
Q ss_pred CCCccEEeCCCCeeee-------------------cCCCccccC--------CCCCcEEEccCCcccccCCccccCCCCC
Q 004218 1 MTSLVYLGLASNQLWG-------------------EIPYDVGDK--------LPNLLGFNFCFNKFTGKIPGSLHNLTNI 53 (767)
Q Consensus 1 l~~L~~L~l~~n~l~~-------------------~ip~~~~~~--------l~~L~~L~l~~n~l~~~~~~~l~~l~~L 53 (767)
+++|++|||++|++.. .||...|.+ +++|++|+|.+ .++.+-+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 5789999999999971 356666666 67777777776 6665555667777777
Q ss_pred CEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCC-EEECcCCcceeecCchhhh----h
Q 004218 54 QIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLN-FLAFDGNQFEGEIPESIGN----L 128 (767)
Q Consensus 54 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~----l 128 (767)
+.|++++|.+....+..|..+.++..+.+..+........ -....+.++..|+ .+.+.... .++..+.. .
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~--i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR--WEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQP 201 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT--TTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCG
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc--ccccccccccccceeEEecCCC---cHHHHHhhcccCc
Confidence 7777777766655556666666555555544211000000 0001122233333 22222111 11121111 1
Q ss_pred ccccCeEEccCCcccccCCccc-cCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCc-e
Q 004218 129 SNVLSKLYMGGNRFYGKIPTSI-GRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLN-Q 206 (767)
Q Consensus 129 ~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~-~ 206 (767)
.+ +..+.+.++-.. .....+ ..+++|+.|+|++|.++.+...+|.++++|++|+|.+| +..+.+.+|.++++|+ .
T Consensus 202 ~~-~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 202 RD-INFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GG-CSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cc-cceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 12 444444433211 111111 12556666666666666555556666666666666665 5545555666666666 6
Q ss_pred eeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhccccccc
Q 004218 207 IDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLT 253 (767)
Q Consensus 207 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~ 253 (767)
|++.+ .++.+.+.+|.++++|+.|++++|+++...+..|.++++|.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 66665 45545556666666666666666666644455566665553
No 376
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.4e-17 Score=174.03 Aligned_cols=282 Identities=12% Similarity=0.083 Sum_probs=123.9
Q ss_pred CCCCCEEEcccccCcccCCccCCC-CCCCcEEeecCcccc--CCCCCCccccccccCCCCCCEEECcCCcceeecCchhh
Q 004218 50 LTNIQIIRMAHNLLEGTVPPGLGN-LPFLKMYNIGFNKIV--GSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIG 126 (767)
Q Consensus 50 l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~--~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 126 (767)
+.+|+.|.++++--. .....+.. +++|+.|+|++|++. .+..+ ..+.+..+.+..|.+ .+..|.
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---------~~~~~~~~~~~~~~I---~~~aF~ 90 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---------TYPNGKFYIYMANFV---PAYAFS 90 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---------SSGGGCCEEECTTEE---CTTTTE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccc---------ccccccccccccccc---CHHHhc
Confidence 556777777765221 11112222 566777777777765 22111 011122333333321 122233
Q ss_pred h--------hccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCcc----cccc
Q 004218 127 N--------LSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQI----SGSI 194 (767)
Q Consensus 127 ~--------l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i----~~~~ 194 (767)
+ +.+ |++|+|.+ +++.+.+.+|.++++|+.|++++|.+..+.+.+|..+.++..+.+..+.. ....
T Consensus 91 ~~~~~~~~g~~~-L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 91 NVVNGVTKGKQT-LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp EEETTEEEECTT-CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred ccccccccccCC-CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence 3 444 55555555 45444445555555555555555555544455555544444444443211 1122
Q ss_pred CcCcccCCCCc-eeeCCCCcCCCCCcccc----cCccccccccccCcccCCCCChhhc-ccccccceeecccccCCCCCc
Q 004218 195 PNTLGNLKKLN-QIDLSGNELASEIPTSF----GNFQNLLSIDLSNNKLNGNIPKEIL-SLSSLTTIVNLSKNFLDGTLP 268 (767)
Q Consensus 195 ~~~~~~l~~L~-~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~l~~~l~l~~n~l~~~~~ 268 (767)
...|.++..|+ .+.+.... .++..+ ....+++.+.+.++-.. .....+. .+++| +.+++++|.++.+.+
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L-~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNL-VSLDISKTNATTIPD 243 (329)
T ss_dssp TSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTC-CEEECTTBCCCEECT
T ss_pred ccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCC-eEEECCCCCcceecH
Confidence 23344444444 23222211 011100 01223333333322110 0001111 13333 222555555554444
Q ss_pred hhhcCCCceeEEEccCCCCCCCCCcccccCcccc-eeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccc
Q 004218 269 EEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLE-KLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLR 347 (767)
Q Consensus 269 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (767)
..|.++++|+.|+|++| ++.+.+..|.++++|+ .+++.+ .++.+.+..|.++++|+.|++++|.+....+..|..++
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence 45555555555555555 4445555555555555 555555 44444455555555555555555555544444555555
Q ss_pred cCceEe
Q 004218 348 ALRSLN 353 (767)
Q Consensus 348 ~L~~L~ 353 (767)
+|+.++
T Consensus 322 ~L~~ly 327 (329)
T 3sb4_A 322 PSKLIY 327 (329)
T ss_dssp CCCEEE
T ss_pred chhhhc
Confidence 555544
No 377
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=5.1e-17 Score=155.26 Aligned_cols=129 Identities=23% Similarity=0.330 Sum_probs=71.1
Q ss_pred ceeeCCCCcCCCCCcccccCccccccccccCcccCCCCCh-hhcccccccceeecccccCCCCCchhhcCCCceeEEEcc
Q 004218 205 NQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPK-EILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLS 283 (767)
Q Consensus 205 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls 283 (767)
+.+++++|.++ .+|..+. .+|++|++++|++++..+. .+..+++|. .|++++|.+++..|..|..+++|+.|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLV-KLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCC-EEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCC-EEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67888888886 4555443 3777888888877744332 244555542 22555555555445555555555555555
Q ss_pred CCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCC
Q 004218 284 ANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSG 337 (767)
Q Consensus 284 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (767)
+|++++..+..|..+++|+.|+|++|+|++..|..+..+++|+.|+|++|++.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 555554444445555555555555555554445555555555555555555543
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=5e-16 Score=148.30 Aligned_cols=91 Identities=27% Similarity=0.392 Sum_probs=47.3
Q ss_pred hhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCC
Q 004218 125 IGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKL 204 (767)
Q Consensus 125 ~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 204 (767)
+..+++ |++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..|..|..+++|
T Consensus 50 ~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 50 FGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp GGGCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred cccCCC-CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 344444 5555555555554445555555555555555555554444445555555555555555554445555555555
Q ss_pred ceeeCCCCcCCC
Q 004218 205 NQIDLSGNELAS 216 (767)
Q Consensus 205 ~~L~L~~N~l~~ 216 (767)
++|+|++|++.+
T Consensus 129 ~~L~L~~N~l~c 140 (192)
T 1w8a_A 129 TSLNLASNPFNC 140 (192)
T ss_dssp CEEECTTCCBCC
T ss_pred CEEEeCCCCccC
Confidence 555555555543
No 379
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.66 E-value=7.7e-17 Score=167.17 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=99.1
Q ss_pred cCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCc--------------chhh--------HHHHHHHHhcCCCCC
Q 004218 455 GNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTG--------------TWKS--------FFAECEALRNTRHRN 512 (767)
Q Consensus 455 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--------------~~~~--------~~~e~~~l~~l~h~n 512 (767)
.=|++.+.||.|++|.||+|...+|+.||||+++..... .... ..+|...+.++.+.+
T Consensus 95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g 174 (397)
T 4gyi_A 95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG 174 (397)
T ss_dssp SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 348899999999999999999989999999987532100 0011 124555555554333
Q ss_pred c--eeEEeeeecCCcccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 004218 513 L--VKLITSCSSLDFKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCD 590 (767)
Q Consensus 513 i--v~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D 590 (767)
+ ...++. ...++||||++|++|.++... .....++.|++.+|.|||+. ||||||
T Consensus 175 v~vp~p~~~---------~~~~LVME~i~G~~L~~l~~~------------~~~~~l~~qll~~l~~lH~~---gIVHrD 230 (397)
T 4gyi_A 175 FPVPEPIAQ---------SRHTIVMSLVDALPMRQVSSV------------PDPASLYADLIALILRLAKH---GLIHGD 230 (397)
T ss_dssp CSCCCEEEE---------ETTEEEEECCSCEEGGGCCCC------------SCHHHHHHHHHHHHHHHHHT---TEECSC
T ss_pred CCCCeeeec---------cCceEEEEecCCccHhhhccc------------HHHHHHHHHHHHHHHHHHHC---CCcCCC
Confidence 2 222222 123799999999888765421 12456889999999999999 999999
Q ss_pred CCCCCeeeCCCC----------ceEEccccchhh
Q 004218 591 LKPGNILLDEDM----------TAKVGDFGLARS 614 (767)
Q Consensus 591 lkp~NIl~~~~~----------~~kl~Dfg~a~~ 614 (767)
|||.|||+++++ .+.|+||+.+..
T Consensus 231 LKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~ 264 (397)
T 4gyi_A 231 FNEFNILIREEKDAEDPSSITLTPIIIXFPQMVS 264 (397)
T ss_dssp CSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEE
T ss_pred CCHHHEEEeCCCCcccccccccceEEEEeCCccc
Confidence 999999998776 389999998854
No 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=2.8e-16 Score=146.80 Aligned_cols=133 Identities=23% Similarity=0.266 Sum_probs=96.2
Q ss_pred CCCCCEEECcCCcce-eecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCE
Q 004218 104 STRLNFLAFDGNQFE-GEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQS 182 (767)
Q Consensus 104 l~~L~~L~l~~n~l~-~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 182 (767)
.++|+.|++++|+++ +.+|..+..+++ |++|++++|++++. ..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~-L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVN-LEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGG-CCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCC-CCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777776 566666677776 78888888877754 66777778888888888877656666666778888
Q ss_pred EEccCCccccccC-cCcccCCCCceeeCCCCcCCCCCc---ccccCccccccccccCcccC
Q 004218 183 LDLAGNQISGSIP-NTLGNLKKLNQIDLSGNELASEIP---TSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 183 L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 239 (767)
|++++|++++..+ ..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888887774322 567777788888888887775544 36777778888888777776
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.9e-16 Score=143.69 Aligned_cols=132 Identities=16% Similarity=0.183 Sum_probs=77.8
Q ss_pred CCCCEEEcccccCc-ccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhc
Q 004218 51 TNIQIIRMAHNLLE-GTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLS 129 (767)
Q Consensus 51 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (767)
++|++|++++|.++ +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|++++.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 55566666666655 44555555556666666666655421 3445556666666666666644555555566
Q ss_pred cccCeEEccCCcccccC-CccccCCCCCCEEECcCCcCcccCc---cccCCCCCCCEEEccCCccc
Q 004218 130 NVLSKLYMGGNRFYGKI-PTSIGRLRSLTLLNLSYNSISGEIL---TEIGQLQELQSLDLAGNQIS 191 (767)
Q Consensus 130 ~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~~n~i~ 191 (767)
+ |++|++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 96 ~-L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 N-LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp T-CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred C-CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6 777777777766421 1556666666666666666664333 35666666666666666655
No 382
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=145.83 Aligned_cols=127 Identities=25% Similarity=0.449 Sum_probs=89.1
Q ss_pred CEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccC
Q 004218 108 NFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAG 187 (767)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (767)
+.+++++|+++ .+|..+. .+ |++|++++|+++ .+|..|.++++|++|+|++|.|+++.+..|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~-l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RD-VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TT-CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CC-CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 35666666666 4554432 23 777777777776 5566777777777777777777766666777777777777777
Q ss_pred CccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccC
Q 004218 188 NQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 188 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (767)
|+|++..+..|..+++|+.|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777666667777777777777777777666666777777777777777765
No 383
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=1.5e-14 Score=154.16 Aligned_cols=267 Identities=9% Similarity=0.086 Sum_probs=189.6
Q ss_pred CCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCC
Q 004218 25 KLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNS 104 (767)
Q Consensus 25 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 104 (767)
....++.+.+-+ .++.+-..+|.+. +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+...+. .++.++
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~------~aF~~c 179 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE------DIFYYC 179 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS------STTTTC
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH------HHhhCc
Confidence 346677777765 4554666778775 7999998877 554556677774 688888875 4543322 356788
Q ss_pred CCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEE
Q 004218 105 TRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLD 184 (767)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 184 (767)
++|+.++++.|+++. ++...+.... |+.+.|..+ +..+...+|.++++|+.+++..| ++.+...+|.+ .+|+.+.
T Consensus 180 ~~L~~l~l~~n~l~~-I~~~aF~~~~-L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 180 YNLKKADLSKTKITK-LPASTFVYAG-IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp TTCCEEECTTSCCSE-ECTTTTTTCC-CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred ccCCeeecCCCcceE-echhhEeecc-cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 889999999998884 4444444565 999999854 77678889999999999999875 66677788888 7899999
Q ss_pred ccCCccccccCcCcccCCCCceeeCCCCcCC-----CCCcccccCccccccccccCcccCCCCChhhcccccccceeecc
Q 004218 185 LAGNQISGSIPNTLGNLKKLNQIDLSGNELA-----SEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLS 259 (767)
Q Consensus 185 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~ 259 (767)
+. +.+..+...+|.++++|+.+.+.+|.+. .+.+.+|.++++|+.+.|.+ .+.....
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~---------------- 316 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ---------------- 316 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT----------------
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh----------------
Confidence 94 5566577788999999999999888775 45677899999999998874 3542222
Q ss_pred cccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccC-CceEEEcCCcccC
Q 004218 260 KNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELK-GLEVLDLSSNKLS 336 (767)
Q Consensus 260 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 336 (767)
..|.++++|+.+.|..| ++.+....|.++ +|+.+++.+|.+.......|..++ +++.|++..+.+.
T Consensus 317 ---------~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 317 ---------GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ---------TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ---------hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 34455556666666443 554556666666 677777777766655556666663 5667777666543
No 384
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=1.2e-14 Score=154.85 Aligned_cols=240 Identities=7% Similarity=0.068 Sum_probs=140.6
Q ss_pred CCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEc
Q 004218 106 RLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDL 185 (767)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 185 (767)
+|+.+.+..+ ++.....+|.+. + |+.+.+.+ .++.+...+|.++.+|+.+++++|.++.+...+|. ..+|+.+.|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~-L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-T-VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-C-CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-C-ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 4666666554 553444555553 3 77777765 55555666677777777777777777655555555 466777777
Q ss_pred cCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCC-
Q 004218 186 AGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLD- 264 (767)
Q Consensus 186 ~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~- 264 (767)
..+ +..+...+|.++++|+.+++..| ++.+...+|.+ .+|+.+.+. +.++......|.++++|..+ .+.+|.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l-~l~~~~~~~ 285 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEV-TTYGSTFND 285 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEE-EEESSCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEE-EeCCccccC
Confidence 643 55455666777777777777654 44455556655 566666663 33443334444444444322 44443332
Q ss_pred ----CCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCC
Q 004218 265 ----GTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIP 340 (767)
Q Consensus 265 ----~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (767)
.+.+..|.++++|+.++|. +.++.+....|.++++|+.++|..| ++.+....|.++ +|+.+++++|.+....+
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 2344556666677777776 3455556666667777777777444 554555666666 67777777766665555
Q ss_pred ccccccc-cCceEeccCCc
Q 004218 341 SDLQNLR-ALRSLNLTFNN 358 (767)
Q Consensus 341 ~~~~~l~-~L~~L~l~~N~ 358 (767)
..|..++ +++.|++..+.
T Consensus 363 ~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSCCCSCTTCCEEEECGGG
T ss_pred ccccCCCCCccEEEeCHHH
Confidence 5555553 45556555444
No 385
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=145.88 Aligned_cols=93 Identities=29% Similarity=0.343 Sum_probs=53.3
Q ss_pred hhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccC
Q 004218 270 EIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRAL 349 (767)
Q Consensus 270 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (767)
.|..+++|+.|+|++|.|++..+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|.|+...+..|..+++|
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128 (193)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence 34444455555555555555555555555555555555555555555555666666666666666664444455666666
Q ss_pred ceEeccCCcCcCc
Q 004218 350 RSLNLTFNNLEGV 362 (767)
Q Consensus 350 ~~L~l~~N~l~~~ 362 (767)
+.|++++|++.+.
T Consensus 129 ~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 129 SHLAIGANPLYCD 141 (193)
T ss_dssp CEEECCSSCEECS
T ss_pred cEEEeCCCCeecC
Confidence 6666666666553
No 386
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=3.6e-15 Score=140.50 Aligned_cols=131 Identities=22% Similarity=0.262 Sum_probs=94.8
Q ss_pred CEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccC
Q 004218 108 NFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAG 187 (767)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (767)
+.+++++|+++ .+|..+. .. |++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~-l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SS-ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TT-CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCCC--CC-CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45666666666 4454332 23 77777777777766666677778888888888888766666677788888888888
Q ss_pred CccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCC
Q 004218 188 NQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNI 242 (767)
Q Consensus 188 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 242 (767)
|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8887666666777888888888888887666666777888888888888777543
No 387
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=5.5e-16 Score=141.54 Aligned_cols=127 Identities=22% Similarity=0.273 Sum_probs=63.3
Q ss_pred CCCCEEECcCCcce-eecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEE
Q 004218 105 TRLNFLAFDGNQFE-GEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSL 183 (767)
Q Consensus 105 ~~L~~L~l~~n~l~-~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 183 (767)
++|+.|++++|.++ +.+|..+..+++ |++|++++|++++. ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEE-LEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTT-CCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCC-CcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34444555555544 344444444444 55555555555433 445555555555555555554444444445555555
Q ss_pred EccCCccccc-cCcCcccCCCCceeeCCCCcCCCCCc---ccccCcccccccccc
Q 004218 184 DLAGNQISGS-IPNTLGNLKKLNQIDLSGNELASEIP---TSFGNFQNLLSIDLS 234 (767)
Q Consensus 184 ~L~~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~ 234 (767)
++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555532 12445555555555555555554333 244555555555544
No 388
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.4e-15 Score=138.91 Aligned_cols=127 Identities=16% Similarity=0.183 Sum_probs=64.7
Q ss_pred CCCCEEEcccccCc-ccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhc
Q 004218 51 TNIQIIRMAHNLLE-GTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLS 129 (767)
Q Consensus 51 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (767)
++|++|++++|.++ +.+|..+..+++|++|++++|++... ..+.++++|++|++++|++++.+|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 44555555555554 34444455555555555555554321 3344455555555555555544555555555
Q ss_pred cccCeEEccCCccccc-CCccccCCCCCCEEECcCCcCcccCc---cccCCCCCCCEEEcc
Q 004218 130 NVLSKLYMGGNRFYGK-IPTSIGRLRSLTLLNLSYNSISGEIL---TEIGQLQELQSLDLA 186 (767)
Q Consensus 130 ~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~ 186 (767)
+ |++|++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 89 ~-L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 N-LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp T-CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred C-CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5 66666666665532 22445555555555555555554332 244455555555543
No 389
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1e-14 Score=137.31 Aligned_cols=133 Identities=22% Similarity=0.289 Sum_probs=93.9
Q ss_pred CceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEcc
Q 004218 204 LNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLS 283 (767)
Q Consensus 204 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls 283 (767)
.+.+++++|.++. +|..+ .++|+.|++++|+++ +..+..++.+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-------------------------~~~~~~~~~l~~L~~L~l~ 60 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQ-------------------------SLPHGVFDKLTQLTKLSLS 60 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCC-------------------------CCCTTTTTTCTTCSEEECC
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCccc-------------------------EeCHHHhcCcccccEEECC
Confidence 3566666666653 33222 245555555555554 3444455667778888888
Q ss_pred CCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCCcCcCcC
Q 004218 284 ANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFNNLEGVV 363 (767)
Q Consensus 284 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 363 (767)
+|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|++++.+
T Consensus 61 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 61 QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 88888766677788888888888888888766667788888888888888888666656677888888888888888765
Q ss_pred C
Q 004218 364 P 364 (767)
Q Consensus 364 ~ 364 (767)
+
T Consensus 141 ~ 141 (177)
T 2o6r_A 141 P 141 (177)
T ss_dssp H
T ss_pred c
Confidence 5
No 390
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=9e-14 Score=149.06 Aligned_cols=319 Identities=12% Similarity=0.042 Sum_probs=227.5
Q ss_pred eeeecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCC
Q 004218 13 QLWGEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGD 92 (767)
Q Consensus 13 ~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 92 (767)
.++ +|....|.+..+|+++.|.. .++.+-..+|.++++|+.++|..+ ++......|..+.+|+.+.+..+ +...+.
T Consensus 58 ~Vt-sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVV-SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEE-EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEe-EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 455 79999999899999999975 477666788999999999999876 55455678999999998887654 333222
Q ss_pred CCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCcc
Q 004218 93 EGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILT 172 (767)
Q Consensus 93 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 172 (767)
. ++.++..+....... .......+|.++.+ |+.+.+.++.. .+...+|.++.+|+.+.+..| ++.+...
T Consensus 134 ~------aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~-L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~ 202 (394)
T 4fs7_A 134 E------AFKGCDFKEITIPEG--VTVIGDEAFATCES-LEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDY 202 (394)
T ss_dssp T------TTTTCCCSEEECCTT--CCEECTTTTTTCTT-CCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTT
T ss_pred e------eeecccccccccCcc--ccccchhhhcccCC-CcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCch
Confidence 2 233443333332222 22244567777777 99999876643 366778888999999998876 5556677
Q ss_pred ccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccc
Q 004218 173 EIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSL 252 (767)
Q Consensus 173 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l 252 (767)
+|.++..|+.+.+..+... . ...+....+|+.+.+..+ ++.+...+|.++..|+.+.+..+... .....|..+..+
T Consensus 203 ~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l 278 (394)
T 4fs7_A 203 CFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL 278 (394)
T ss_dssp TTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC
T ss_pred hhccccccceeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccccc
Confidence 8888888988888776544 2 333444577888887654 33355667888888888888777544 555666666666
Q ss_pred cceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCC
Q 004218 253 TTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSS 332 (767)
Q Consensus 253 ~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (767)
... ....+.+ ....|....+|+.+.+.++ ++.+....|.++.+|+.+++.++ ++.+...+|.++.+|+.+++..
T Consensus 279 ~~~-~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 279 KKV-IYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp CEE-EECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred cee-ccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 443 4443332 2346777888898888765 66567778888999999998754 6656678888999999999987
Q ss_pred cccCCCCCccccccccCceEeccCC
Q 004218 333 NKLSGSIPSDLQNLRALRSLNLTFN 357 (767)
Q Consensus 333 N~l~~~~~~~~~~l~~L~~L~l~~N 357 (767)
| ++.+....|..+.+|+.+++..+
T Consensus 353 ~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 353 S-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c-ccEehHHHhhCCCCCCEEEECCC
Confidence 7 66566778888899999988654
No 391
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=1.4e-13 Score=147.45 Aligned_cols=318 Identities=10% Similarity=0.045 Sum_probs=220.0
Q ss_pred cccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcc
Q 004218 38 KFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQF 117 (767)
Q Consensus 38 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 117 (767)
.++.+-..+|.++++|+.+.|..+ ++.....+|.++++|+.+++..+ ++..+. .++.++++|+.+.+..+ +
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~------~aF~~c~~L~~i~~p~~-l 128 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGR------CTFSGCYALKSILLPLM-L 128 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT------TTTTTCTTCCCCCCCTT-C
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccc------hhhcccccchhhcccCc-e
Confidence 456566678999999999999754 66456678999999999999754 443332 24567777877777654 4
Q ss_pred eeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcC
Q 004218 118 EGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNT 197 (767)
Q Consensus 118 ~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 197 (767)
......+|.+.. +....+..+ +......+|.++.+|+.+.+.++. ..+...+|.++.+|+.+.+..| +......+
T Consensus 129 ~~i~~~aF~~~~--~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~ 203 (394)
T 4fs7_A 129 KSIGVEAFKGCD--FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYC 203 (394)
T ss_dssp CEECTTTTTTCC--CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTT
T ss_pred eeecceeeeccc--ccccccCcc-ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchh
Confidence 435555666554 333333322 233556789999999999998664 3367788999999999999877 55466778
Q ss_pred cccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCce
Q 004218 198 LGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNV 277 (767)
Q Consensus 198 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L 277 (767)
|.++..|+.+.+..+... +.+.+....+|+.+.+..+- .......+..+..+..+ .+..+... .....|.....+
T Consensus 204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~-~~~~~~~~-i~~~~F~~~~~l 278 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESI-SIQNNKLR-IGGSLFYNCSGL 278 (394)
T ss_dssp TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEE-EECCTTCE-ECSCTTTTCTTC
T ss_pred hccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeE-EcCCCcce-eecccccccccc
Confidence 889999999988876543 23334455788888876543 32445566677777444 66665443 566678888888
Q ss_pred eEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceEeccCC
Q 004218 278 VTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFN 357 (767)
Q Consensus 278 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 357 (767)
+.+.+..+.+. ...|..+.+|+.+.+.++ ++.+....|..+.+|+.++|.++ ++.+....|..+.+|+.+++..|
T Consensus 279 ~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 279 KKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 88888776543 356888899999998765 66566778999999999999754 66566778889999999999766
Q ss_pred cCcCcCCCCc-cccccccccccCC
Q 004218 358 NLEGVVPREG-IFRHTSMVHLEGN 380 (767)
Q Consensus 358 ~l~~~~~~~~-~~~~~~~~~l~~N 380 (767)
++.+..... ...++..+.+..+
T Consensus 354 -l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 -LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -ccEehHHHhhCCCCCCEEEECCC
Confidence 665543331 1244555655443
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=7.4e-15 Score=138.13 Aligned_cols=133 Identities=20% Similarity=0.216 Sum_probs=93.9
Q ss_pred ccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCC
Q 004218 101 LTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQEL 180 (767)
Q Consensus 101 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 180 (767)
+.++++|+.|++++|+++ .+|. +..+..+|++|++++|++++. ..|..+++|++|++++|.|++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445666777777777776 3443 444442278888888887754 567778888888888888876544555778888
Q ss_pred CEEEccCCccccccCc--CcccCCCCceeeCCCCcCCCCCcc----cccCccccccccccCcccC
Q 004218 181 QSLDLAGNQISGSIPN--TLGNLKKLNQIDLSGNELASEIPT----SFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 181 ~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~n~l~ 239 (767)
++|+|++|+|. .+|. .+..+++|+.|++++|+++. .|. .+..+++|+.|++++|.+.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888886 4454 67778888888888888864 444 3777888888888887765
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.8e-14 Score=134.12 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=65.3
Q ss_pred ccCCCCCCEEEcccccCcccCCccCCCCC-CCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchh
Q 004218 47 LHNLTNIQIIRMAHNLLEGTVPPGLGNLP-FLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESI 125 (767)
Q Consensus 47 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 125 (767)
+.++.+|++|++++|.++ .++. +..+. +|++|++++|.+.+ + ..+..+++|++|++++|++++..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-------~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-------L-DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-------E-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-------c-cccccCCCCCEEECCCCcccccCcchh
Confidence 445555555555555555 2332 22222 55555555555432 1 334455555555555555553333333
Q ss_pred hhhccccCeEEccCCcccccCCc--cccCCCCCCEEECcCCcCcccCcc----ccCCCCCCCEEEccCCccc
Q 004218 126 GNLSNVLSKLYMGGNRFYGKIPT--SIGRLRSLTLLNLSYNSISGEILT----EIGQLQELQSLDLAGNQIS 191 (767)
Q Consensus 126 ~~l~~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~i~ 191 (767)
..+++ |++|++++|+++ .+|. .+..+++|++|++++|.++. .+. .+..+++|+.|++++|.+.
T Consensus 85 ~~l~~-L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALPD-LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTT-CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCC-CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 55555 666666666554 2333 45555555555555555552 232 2444555555555555443
No 394
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=2.7e-16 Score=151.21 Aligned_cols=109 Identities=24% Similarity=0.358 Sum_probs=61.1
Q ss_pred ccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCc-cccCCCCC
Q 004218 101 LTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEIL-TEIGQLQE 179 (767)
Q Consensus 101 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~ 179 (767)
+.++++|++|++++|+++ .+|..+..+++ |++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++
T Consensus 66 ~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~-L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~ 141 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIK-KIENLDAVADT-LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141 (198)
T ss_dssp HHHHTTCCEEEEEEEEEC-SCSSHHHHHHH-CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred cccCCCCCEEECCCCCcc-cccchhhcCCc-CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCC
Confidence 334444444555555544 44555555555 6666666666663 23 45566666666666666664222 35666666
Q ss_pred CCEEEccCCccccccCc----------CcccCCCCceeeCCCCcCC
Q 004218 180 LQSLDLAGNQISGSIPN----------TLGNLKKLNQIDLSGNELA 215 (767)
Q Consensus 180 L~~L~L~~n~i~~~~~~----------~~~~l~~L~~L~L~~N~l~ 215 (767)
|++|++++|.+.+..|. .+..+++|+.|+ +|.++
T Consensus 142 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 77777776666644443 255566666665 44443
No 395
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=4e-16 Score=150.01 Aligned_cols=152 Identities=22% Similarity=0.280 Sum_probs=117.4
Q ss_pred CCCCcEEEccCCcccccCCc------cccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccc
Q 004218 26 LPNLLGFNFCFNKFTGKIPG------SLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFIT 99 (767)
Q Consensus 26 l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 99 (767)
...++.++++.+.+.+.+|. .+..+++|++|+|++|.+++ +| .+..+++|++|++++|.+.. ++.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-------l~~ 87 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-------IEN 87 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-------CSS
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-------ccc
Confidence 55667777777777766665 78888888888888888884 56 77888888888888888863 334
Q ss_pred cccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCC-ccccCCCCCCEEECcCCcCcccCcc------
Q 004218 100 SLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIP-TSIGRLRSLTLLNLSYNSISGEILT------ 172 (767)
Q Consensus 100 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~------ 172 (767)
.+..+++|++|++++|++++ +| .+..+++ |++|++++|+++...+ ..+..+++|++|++++|.+.+..|.
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~-L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIAS-LS-GIEKLVN-LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCC-HH-HHHHHHH-SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred hhhcCCcCCEEECcCCcCCc-CC-ccccCCC-CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 45566788899999998884 45 6888887 9999999999985332 4788899999999999999765443
Q ss_pred ----ccCCCCCCCEEEccCCccc
Q 004218 173 ----EIGQLQELQSLDLAGNQIS 191 (767)
Q Consensus 173 ----~~~~l~~L~~L~L~~n~i~ 191 (767)
.+..+++|++|| +|.++
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHhCCCcEEEC--CcccC
Confidence 277899999987 66665
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.3e-13 Score=125.72 Aligned_cols=105 Identities=28% Similarity=0.333 Sum_probs=57.9
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
.+.+++++|+++ .+|..+. ++|++|+|++|.|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 344555555554 2343332 4555555555555555555555555555555555555544444555555666666666
Q ss_pred CcCCCCCcccccCccccccccccCcccC
Q 004218 212 NELASEIPTSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 212 N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (767)
|+|++..+..|..+++|+.|+|++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6655544555555566666666666555
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=5.3e-13 Score=124.75 Aligned_cols=104 Identities=21% Similarity=0.331 Sum_probs=49.3
Q ss_pred CEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccC
Q 004218 108 NFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAG 187 (767)
Q Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (767)
+.+++++|+++ .+|..+. .. |++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TD-KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TT-CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CC-CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44555555554 4444332 22 55555555555544444455555555555555555543333344445555555555
Q ss_pred CccccccCcCcccCCCCceeeCCCCcCC
Q 004218 188 NQISGSIPNTLGNLKKLNQIDLSGNELA 215 (767)
Q Consensus 188 n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 215 (767)
|+|++..+..|..+++|+.|+|++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5544333333444444444444444444
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4.7e-13 Score=124.65 Aligned_cols=107 Identities=25% Similarity=0.312 Sum_probs=92.3
Q ss_pred CCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEcc
Q 004218 107 LNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLA 186 (767)
Q Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (767)
.+.+++++|+++ .+|..+. .. |++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~-l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TT-TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TT-CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CC-CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 467888888887 5676553 34 9999999999998888899999999999999999998777788999999999999
Q ss_pred CCccccccCcCcccCCCCceeeCCCCcCCCC
Q 004218 187 GNQISGSIPNTLGNLKKLNQIDLSGNELASE 217 (767)
Q Consensus 187 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 217 (767)
+|+|++..+..|..+++|++|+|++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999977777899999999999999999754
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=8e-13 Score=123.50 Aligned_cols=106 Identities=25% Similarity=0.290 Sum_probs=93.5
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
-+.+++++|+++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 468999999997 6677664 8999999999999988888999999999999999999977667788999999999999
Q ss_pred CcCCCCCcccccCccccccccccCcccCC
Q 004218 212 NELASEIPTSFGNFQNLLSIDLSNNKLNG 240 (767)
Q Consensus 212 N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (767)
|+|++..+..|..+++|+.|+|++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99998777779999999999999999983
No 400
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=4e-11 Score=128.36 Aligned_cols=318 Identities=11% Similarity=0.103 Sum_probs=150.3
Q ss_pred cCCCccccCCC-CCcEEEccCCcccccCCccccCCCCCCEEEccccc---CcccCCccCCCCCCCcEEeecCccccCCCC
Q 004218 17 EIPYDVGDKLP-NLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNL---LEGTVPPGLGNLPFLKMYNIGFNKIVGSGD 92 (767)
Q Consensus 17 ~ip~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 92 (767)
+|+...|.... .|+++.+-.+ ++.+-..+|.++++|+.+.++.|. ++.....+|..+.+|+.+.+..+ ++..+
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~- 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID- 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC-
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh-
Confidence 45555555443 4677766543 554555667777777777776653 44334456666666666665433 22211
Q ss_pred CCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCcc
Q 004218 93 EGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILT 172 (767)
Q Consensus 93 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 172 (767)
...+..+.+|+.+.+..+ +.......+..+.. |+.+.+..+ ++.+...+|.. .+|+.+.+..+-.. +...
T Consensus 130 -----~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~-L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~ 199 (394)
T 4gt6_A 130 -----SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYS-LHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTN 199 (394)
T ss_dssp -----TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTT
T ss_pred -----hhhhhhhcccccccccce-eeeecccceecccc-cccccccce-eeEeccccccc-cceeEEEECCcccc-cccc
Confidence 123455666666666543 22244445555555 666666554 33344444543 45666666554333 4455
Q ss_pred ccCCCCCCCEEEccCCccccccCcCcc--------------cCCCCceeeCCCCcCCCCCcccccCccccccccccCccc
Q 004218 173 EIGQLQELQSLDLAGNQISGSIPNTLG--------------NLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKL 238 (767)
Q Consensus 173 ~~~~l~~L~~L~L~~n~i~~~~~~~~~--------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (767)
+|..+.+++......+... .....+. ....+..+.+.. .++.+...+|.++.+|+.+.+.++..
T Consensus 200 af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 200 AFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp TTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC
T ss_pred hhhhccccceecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc
Confidence 6666666666655544433 1111111 111222222221 12222334555556666665554332
Q ss_pred CCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCch
Q 004218 239 NGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNI 318 (767)
Q Consensus 239 ~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 318 (767)
. .....|.++..|..+ .+. +.++.+....|.++.+|+.++|..+ ++.+....|.++.+|+.+.+..+ ++.+...+
T Consensus 278 ~-I~~~aF~~c~~L~~i-~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a 352 (394)
T 4gt6_A 278 S-IGTGAFMNCPALQDI-EFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESA 352 (394)
T ss_dssp E-ECTTTTTTCTTCCEE-ECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred e-ecCcccccccccccc-cCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence 2 333444444444332 332 2333333444555555555555433 33344455555555555555432 44344445
Q ss_pred hhccCCceEEEcCCcccCCCCCccccccccCceEeccCC
Q 004218 319 LAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSLNLTFN 357 (767)
Q Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 357 (767)
|.++.+|+.+++.+|.... ..+..+.+|+.+.+..|
T Consensus 353 F~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 353 FSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp GTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred hhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 5555555555555544321 23334444554444433
No 401
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=1.8e-14 Score=152.14 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=45.1
Q ss_pred CCCEEECcCCcceeecCchhhhh-----ccccCeEEccCCcccc----cCCccccCCCCCCEEECcCCcCcccC----cc
Q 004218 106 RLNFLAFDGNQFEGEIPESIGNL-----SNVLSKLYMGGNRFYG----KIPTSIGRLRSLTLLNLSYNSISGEI----LT 172 (767)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l-----~~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~n~i~~~~----~~ 172 (767)
+|+.|+|++|+++......++.. .. |++|+|++|+|+. .++..+..+++|++|+|++|.|+... ..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~-L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQ-ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCC-CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCc-cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 44555555555543333333221 22 4555555554432 12222344444555555555444221 22
Q ss_pred ccCCCCCCCEEEccCCccccc----cCcCcccCCCCceeeCCCCcCC
Q 004218 173 EIGQLQELQSLDLAGNQISGS----IPNTLGNLKKLNQIDLSGNELA 215 (767)
Q Consensus 173 ~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~ 215 (767)
.+...++|++|+|++|.|++. ++..+...++|++|+|++|.|+
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 333444455555555544421 1122223344444444444443
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=9e-14 Score=146.73 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=111.1
Q ss_pred CCCcEEeecCccccCCCCCCccccccccC-CCCCCEEECcCCcceeecCchhhh-hccccCeEEccCCcccccCCccc--
Q 004218 75 PFLKMYNIGFNKIVGSGDEGLSFITSLTN-STRLNFLAFDGNQFEGEIPESIGN-LSNVLSKLYMGGNRFYGKIPTSI-- 150 (767)
Q Consensus 75 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~-l~~~L~~L~l~~n~i~~~~~~~l-- 150 (767)
+.|++|+|++|.++..... .+...+.. .++|+.|+|++|.++......+.. +.+ |++|+|++|+++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCT--VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR-ARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHH--HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHT-EEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHH--HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHh-ccHhhcCCCCCCHHHHHHHHH
Confidence 5677777777776532111 22223332 368888888888887554445544 344 8899999998875444444
Q ss_pred ---cCCCCCCEEECcCCcCccc----CccccCCCCCCCEEEccCCcccccc----CcCcccCCCCceeeCCCCcCCCCC-
Q 004218 151 ---GRLRSLTLLNLSYNSISGE----ILTEIGQLQELQSLDLAGNQISGSI----PNTLGNLKKLNQIDLSGNELASEI- 218 (767)
Q Consensus 151 ---~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~~~~- 218 (767)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|.+.. +..+...++|++|+|++|.|+...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 3467899999999988753 3334467888999999999887432 455667788999999999887432
Q ss_pred ---cccccCccccccccccCcccCCC
Q 004218 219 ---PTSFGNFQNLLSIDLSNNKLNGN 241 (767)
Q Consensus 219 ---~~~~~~l~~L~~L~l~~n~l~~~ 241 (767)
+..+...++|++|+|++|.|+..
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 23344567888888888887743
No 403
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.29 E-value=6.7e-12 Score=126.44 Aligned_cols=147 Identities=16% Similarity=0.070 Sum_probs=113.1
Q ss_pred HHHHhcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCC-CCCceeEEeeeecCCcccc
Q 004218 450 LRRATGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTR-HRNLVKLITSCSSLDFKNM 528 (767)
Q Consensus 450 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~ 528 (767)
+......|++....+.|+.+.||++... ++.+++|+...........+.+|+++++.+. +..+.++++++. ..
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~-----~~ 82 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER-----HD 82 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEE-----ET
T ss_pred HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEe-----cC
Confidence 4455678988888999999999999865 6889999986432233456889999999884 677888888754 34
Q ss_pred eeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--------------------------
Q 004218 529 EFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDC-------------------------- 582 (767)
Q Consensus 529 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-------------------------- 582 (767)
+..|+||||++|.++.+.+.. ..+...++.+++++++.||+..
T Consensus 83 ~~~~lv~e~i~G~~l~~~~~~-----------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (263)
T 3tm0_A 83 GWSNLLMSEADGVLCSEEYED-----------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLA 151 (263)
T ss_dssp TEEEEEEECCSSEEHHHHCCT-----------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCS
T ss_pred CceEEEEEecCCeehhhccCC-----------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccc
Confidence 556999999999999876421 1123468899999999999810
Q ss_pred ------------------------------CCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 583 ------------------------------EVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 583 ------------------------------~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
+..++|||++|.||+++++..+.|+||+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 152 DVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp CCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred ccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 1359999999999999876666799998874
No 404
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.28 E-value=1.3e-10 Score=124.34 Aligned_cols=311 Identities=11% Similarity=0.093 Sum_probs=217.1
Q ss_pred CccEEeCCCCeeeecCCCccccCCCCCcEEEccCCc---ccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcE
Q 004218 3 SLVYLGLASNQLWGEIPYDVGDKLPNLLGFNFCFNK---FTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKM 79 (767)
Q Consensus 3 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 79 (767)
.|+.+.+..+ ++ +|....|.+..+|+.+.+..|. ++.+-..+|..+.+|+.+.+..+ ++......|..+.+|+.
T Consensus 65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 4777888654 66 8899999999999999998874 66555678999999999888766 44356678899999999
Q ss_pred EeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEE
Q 004218 80 YNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLL 159 (767)
Q Consensus 80 L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 159 (767)
+.+..+- ...+ ...+..+.+|+.+.+..+ ++.....+|. ... |+.+.+..+-.. ....+|.++.+|+..
T Consensus 142 i~lp~~~-~~I~------~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~-l~~i~ip~~~~~-i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 142 VTIPEGV-TSVA------DGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTA-LTQIHIPAKVTR-IGTNAFSECFALSTI 210 (394)
T ss_dssp EECCTTC-CEEC------TTTTTTCTTCCEEECCTT-CCEECTTTTT-TCC-CSEEEECTTCCE-ECTTTTTTCTTCCEE
T ss_pred cccccee-eeec------ccceecccccccccccce-eeEecccccc-ccc-eeEEEECCcccc-cccchhhhcccccee
Confidence 9997543 3222 235677889999999865 4434444454 445 999999876554 677889999999998
Q ss_pred ECcCCcCcccCccc-------------cCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCcc
Q 004218 160 NLSYNSISGEILTE-------------IGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQ 226 (767)
Q Consensus 160 ~l~~n~i~~~~~~~-------------~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 226 (767)
....+......-.. +.....+..+.+.. .+......+|.++..|+.+.+.++... +...+|.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~ 288 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCP 288 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccccc
Confidence 87766544211111 11223444555443 333355677888899999998766543 6677888889
Q ss_pred ccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeec
Q 004218 227 NLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLM 306 (767)
Q Consensus 227 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l 306 (767)
+|+.+.+. +.++......|.++.+|..+ .+..+ ++.+....|.++.+|+.+.|..+ ++.+....|.++++|+.+++
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i-~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSI-DIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEE-ECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred ccccccCC-CcccccCceeecCCCCcCEE-EeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 99999886 44554556778888888555 77654 55566778999999999999765 77677889999999999999
Q ss_pred cCccccCCCCchhhccCCceEEEcCCcccC
Q 004218 307 ANNKFSGPIPNILAELKGLEVLDLSSNKLS 336 (767)
Q Consensus 307 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (767)
.++.... ..+..+.+|+.+.+..|.+.
T Consensus 365 ~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 365 SGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp SSCHHHH---HTCBCCCCC-----------
T ss_pred CCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 9987542 45677788999988877653
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=9.9e-12 Score=130.78 Aligned_cols=105 Identities=20% Similarity=0.187 Sum_probs=79.7
Q ss_pred ecccc-cCCCCCchhhcCCCceeEEEccC-CCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcc
Q 004218 257 NLSKN-FLDGTLPEEIGMLGNVVTIDLSA-NGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNK 334 (767)
Q Consensus 257 ~l~~n-~l~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (767)
+.+++ .++ .+|. +..+++|+.|+|++ |.|+++.+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 56665 666 3555 77777888888885 88887777788888888888888888887777788888888888888888
Q ss_pred cCCCCCccccccccCceEeccCCcCcCcCC
Q 004218 335 LSGSIPSDLQNLRALRSLNLTFNNLEGVVP 364 (767)
Q Consensus 335 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 364 (767)
|++..+..+..++ |+.|+|.+|++.+...
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 8865555555555 8888888888876543
No 406
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=2.7e-11 Score=127.40 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=65.3
Q ss_pred eEEccCC-cccccCCccccCCCCCCEEECcC-CcCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 134 KLYMGGN-RFYGKIPTSIGRLRSLTLLNLSY-NSISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 134 ~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
.++++++ +++ .+|. |..+++|++|+|++ |.|+++.+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 555 3555 66666666666664 666665556666666666666666666666666666666666666666
Q ss_pred CcCCCCCcccccCccccccccccCcccC
Q 004218 212 NELASEIPTSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 212 N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (767)
|+|++..+..|..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666655555555544 666666666665
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.12 E-value=9.1e-11 Score=118.05 Aligned_cols=138 Identities=14% Similarity=0.012 Sum_probs=98.8
Q ss_pred hcCCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCC--ceeEEeeeecCCcccceee
Q 004218 454 TGNFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRN--LVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 454 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~~~~~~~~~~~~~ 531 (767)
...|.+....+.|..+.||++...+|+.+++|+.... ....+.+|+++++.+.+.+ +.+++++.. .++..
T Consensus 19 ~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~-----~~~~~ 90 (264)
T 1nd4_A 19 LFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVT-----EAGRD 90 (264)
T ss_dssp TTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEE-----CSSCE
T ss_pred cCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEecc-----CCCCC
Confidence 3445544333456669999998777888999997533 3356788999998885444 455777643 23456
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC-----------------------------
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDC----------------------------- 582 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~----------------------------- 582 (767)
++||||++|.++. ... .+ ...++.++++.++.||+..
T Consensus 91 ~~v~e~i~G~~l~--~~~---------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (264)
T 1nd4_A 91 WLLLGEVPGQDLL--SSH---------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQD 156 (264)
T ss_dssp EEEEECCSSEETT--TSC---------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTT
T ss_pred EEEEEecCCcccC--cCc---------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccch
Confidence 9999999998884 211 11 2356788888888888752
Q ss_pred --------------------------CCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 583 --------------------------EVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 583 --------------------------~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
+..++|||++|.||++++++.+.|+|||.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 157 DLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp SCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1129999999999999877667799999874
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.04 E-value=1.7e-08 Score=107.39 Aligned_cols=301 Identities=11% Similarity=0.082 Sum_probs=208.3
Q ss_pred CCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCC
Q 004218 25 KLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNS 104 (767)
Q Consensus 25 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 104 (767)
.-.+|+++.+.. .++.+-..+|.++.+|+.++|..+ ++.....+|.++ +|+.+.+..+ +...+.. ++..
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~------aF~~- 112 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDY------VFQG- 112 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTT------TTTT-
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccc------eecc-
Confidence 345788888864 577566778999999999999765 554556678776 6888777643 4433332 2222
Q ss_pred CCCCEEECcCCcceeecCchhhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcc------------cCcc
Q 004218 105 TRLNFLAFDGNQFEGEIPESIGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISG------------EILT 172 (767)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~------------~~~~ 172 (767)
.+|+.+.+..+- .......+.+. . |+.+.+..+ ++.....+|..+.+++.+.+..+.... ....
T Consensus 113 ~~L~~i~lp~~~-~~i~~~~F~~~-~-l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 113 TDLDDFEFPGAT-TEIGNYIFYNS-S-VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp CCCSEEECCTTC-CEECTTTTTTC-C-CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred CCcccccCCCcc-ccccccccccc-e-eeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceec
Confidence 478889887653 32444444443 3 777776654 444667788888899888877654331 1223
Q ss_pred ccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccc
Q 004218 173 EIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSL 252 (767)
Q Consensus 173 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l 252 (767)
.+.....+..+.+..+.-. .....+....+|+.+.+..+ +..+...+|.++..|+.+.+..+ ++......|.++.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 4555666777766654433 55667777888888888765 44456677888888998888765 554555677777777
Q ss_pred cceeecccccCCCCCchhhcCCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCC
Q 004218 253 TTIVNLSKNFLDGTLPEEIGMLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSS 332 (767)
Q Consensus 253 ~~~l~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (767)
..+ .+.. .+.......|.++++|+.+.+.++.++.+....|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..
T Consensus 266 ~~i-~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 266 KTL-NFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEE-EECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccc-cccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 544 5543 355455667889999999999999898788889999999999999755 6666778899999999999876
Q ss_pred cccCCCCCccccccc
Q 004218 333 NKLSGSIPSDLQNLR 347 (767)
Q Consensus 333 N~l~~~~~~~~~~l~ 347 (767)
+ ++.+....|..+.
T Consensus 343 ~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 343 S-ITLIESGAFEGSS 356 (379)
T ss_dssp T-CCEECTTTTTTSS
T ss_pred c-cCEEchhHhhCCC
Confidence 5 5545555666554
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2.1e-08 Score=106.54 Aligned_cols=296 Identities=11% Similarity=0.101 Sum_probs=208.9
Q ss_pred ccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcceeecCch
Q 004218 45 GSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPES 124 (767)
Q Consensus 45 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 124 (767)
.++....+|+.+.+... ++.....+|.++.+|+.+.|..+ ++..+... +.++ +|+.+.+..+ ++.....+
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~a------F~~c-~l~~i~~~~~-l~~I~~~a 109 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGA------FADT-KLQSYTGMER-VKKFGDYV 109 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTT------TTTC-CCCEEEECTT-CCEECTTT
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhh------hcCC-CCceEECCce-eeEeccce
Confidence 35677788999998754 55456678999999999999754 55544442 3444 5777777643 55333444
Q ss_pred hhhhccccCeEEccCCcccccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccCCccccc-----------
Q 004218 125 IGNLSNVLSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAGNQISGS----------- 193 (767)
Q Consensus 125 ~~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~----------- 193 (767)
|.. .+ |+.+.+..+-. .....+|.+. +|+.+.+..+ ++.+...+|..+.+++...+..+.....
T Consensus 110 F~~-~~-L~~i~lp~~~~-~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (379)
T 4h09_A 110 FQG-TD-LDDFEFPGATT-EIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNK 184 (379)
T ss_dssp TTT-CC-CSEEECCTTCC-EECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTS
T ss_pred ecc-CC-cccccCCCccc-cccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccc
Confidence 444 45 99999987643 3555666654 6888777654 4546677888999999988876554311
Q ss_pred -cCcCcccCCCCceeeCCCCcCCCCCcccccCccccccccccCcccCCCCChhhcccccccceeecccccCCCCCchhhc
Q 004218 194 -IPNTLGNLKKLNQIDLSGNELASEIPTSFGNFQNLLSIDLSNNKLNGNIPKEILSLSSLTTIVNLSKNFLDGTLPEEIG 272 (767)
Q Consensus 194 -~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~l~l~~n~l~~~~~~~~~ 272 (767)
....+.....+..+.+..+.- ......+....+|+.+.+..+ +.......+.++..|..+ .+..+ ++.+....|.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i-~lp~~-v~~I~~~aF~ 260 (379)
T 4h09_A 185 TILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEI-AIPKN-VTSIGSFLLQ 260 (379)
T ss_dssp SEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEE-EECTT-CCEECTTTTT
T ss_pred ceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEE-EcCCC-ccEeCccccc
Confidence 112234445566666554433 245567778889999888765 343556677778877554 66654 5556667888
Q ss_pred CCCceeEEEccCCCCCCCCCcccccCcccceeeccCccccCCCCchhhccCCceEEEcCCcccCCCCCccccccccCceE
Q 004218 273 MLGNVVTIDLSANGLSGNLPNSFKNCKSLEKLLMANNKFSGPIPNILAELKGLEVLDLSSNKLSGSIPSDLQNLRALRSL 352 (767)
Q Consensus 273 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (767)
+..+|+.+.+..+ +..+....|.++++|+.+.+.++.++.+....|.++.+|+.+.|..+ ++.+....|..+.+|+.+
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 8999999999765 66567788999999999999999998778889999999999999765 665666789999999999
Q ss_pred eccCCcCcCc
Q 004218 353 NLTFNNLEGV 362 (767)
Q Consensus 353 ~l~~N~l~~~ 362 (767)
.+..+ ++.+
T Consensus 339 ~ip~~-v~~I 347 (379)
T 4h09_A 339 SYPKS-ITLI 347 (379)
T ss_dssp CCCTT-CCEE
T ss_pred EECCc-cCEE
Confidence 98654 5443
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=2e-10 Score=119.95 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=114.8
Q ss_pred CCCCCcEEEccCCccc---------ccCCccccCCCCCCEEEcccccCcccCCccCCCCCCCcEEeecCccccCCCCCCc
Q 004218 25 KLPNLLGFNFCFNKFT---------GKIPGSLHNLTNIQIIRMAHNLLEGTVPPGLGNLPFLKMYNIGFNKIVGSGDEGL 95 (767)
Q Consensus 25 ~l~~L~~L~l~~n~l~---------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 95 (767)
++++|+.|.+..+... +.++..+..+++|+.|+|++|.-. .++. +. +++|++|+|..|.+..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~------ 207 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPD------ 207 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCH------
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCCh------
Confidence 5778888888665331 124456678889999999887311 2333 43 7889999998887642
Q ss_pred ccccccc--CCCCCCEEECcC--Ccceee-----cCchh--hhhccccCeEEccCCcccccCCcccc---CCCCCCEEEC
Q 004218 96 SFITSLT--NSTRLNFLAFDG--NQFEGE-----IPESI--GNLSNVLSKLYMGGNRFYGKIPTSIG---RLRSLTLLNL 161 (767)
Q Consensus 96 ~~~~~l~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~l 161 (767)
.....+. .+++|+.|+|+. |...+. +...+ ..+++ |++|+|.+|.+....+..+. .+++|++|+|
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~-Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN-LKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTT-CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCC-cCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence 2233333 678888888753 221111 11112 13455 99999999988754333333 4789999999
Q ss_pred cCCcCcccCc----cccCCCCCCCEEEccCCccccccCcCccc-CCCCceeeCCCCc
Q 004218 162 SYNSISGEIL----TEIGQLQELQSLDLAGNQISGSIPNTLGN-LKKLNQIDLSGNE 213 (767)
Q Consensus 162 ~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~N~ 213 (767)
+.|.+++... ..+..+++|+.|+|++|.|+......+.. + ...++++.++
T Consensus 287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 9999886433 23345789999999999888544444443 2 4668888887
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=1.1e-10 Score=121.75 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=31.4
Q ss_pred CCCCCEEEccCCccccccCcCcc---cCCCCceeeCCCCcCCCC----CcccccCccccccccccCcccC
Q 004218 177 LQELQSLDLAGNQISGSIPNTLG---NLKKLNQIDLSGNELASE----IPTSFGNFQNLLSIDLSNNKLN 239 (767)
Q Consensus 177 l~~L~~L~L~~n~i~~~~~~~~~---~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 239 (767)
+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.++.. ++..+..+++|+.|+|++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 45566666655555432222222 345566666666655432 1222234556666666666555
No 412
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.93 E-value=2.2e-09 Score=113.19 Aligned_cols=145 Identities=16% Similarity=0.167 Sum_probs=106.1
Q ss_pred CCCccccccceEEEEEEeCCCcEEEEEEee--ccC-CcchhhHHHHHHHHhcCC--CCCceeEEeeeecCCcccceeeEE
Q 004218 459 HENLIGSGSFGSVYKGYLREGISVAVKVLD--IES-TGTWKSFFAECEALRNTR--HRNLVKLITSCSSLDFKNMEFLAL 533 (767)
Q Consensus 459 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~~~~~~~~~l 533 (767)
..+.++.|.++.||++... +..+++|+.. ... ......+.+|+++++.+. +..+.+++.++.... ..+..++
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~--~~g~~~~ 118 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDES--VIGRAFY 118 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTT--TTSSCEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCC--ccCCeEE
Confidence 3567899999999999876 4678888775 322 123457788999999886 455788888865432 1234689
Q ss_pred EEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC-------------------------------
Q 004218 534 VYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDC------------------------------- 582 (767)
Q Consensus 534 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------------------------------- 582 (767)
||||++|.++.+... ..++..++..++.++++.|+.||+..
T Consensus 119 vme~v~G~~l~~~~~--------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (359)
T 3dxp_A 119 IMEFVSGRVLWDQSL--------PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSE 190 (359)
T ss_dssp EEECCCCBCCCCTTC--------TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCeecCCCcc--------ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcC
Confidence 999999987754211 12778888999999999999999731
Q ss_pred ------------------------CCCeEeecCCCCCeeeCCCCc--eEEccccchhh
Q 004218 583 ------------------------EVPIVHCDLKPGNILLDEDMT--AKVGDFGLARS 614 (767)
Q Consensus 583 ------------------------~~~ivH~Dlkp~NIl~~~~~~--~kl~Dfg~a~~ 614 (767)
+..++|||++|.||+++.++. +.|+||+.+..
T Consensus 191 ~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 191 TESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp CSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred CcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 247999999999999997653 68999998864
No 413
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.85 E-value=5.4e-10 Score=114.95 Aligned_cols=194 Identities=14% Similarity=0.090 Sum_probs=121.4
Q ss_pred CCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCC-CCC--ceeEEeeeecCCcccceeeEEEEe
Q 004218 460 ENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTR-HRN--LVKLITSCSSLDFKNMEFLALVYE 536 (767)
Q Consensus 460 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~n--iv~~~~~~~~~~~~~~~~~~lv~e 536 (767)
.+.++.|....||++. ..+++|+.... .....+.+|+++++.+. +.. +.+++...... ......|+|||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~--~~~~~~~~vm~ 96 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPS--ETYQMSFAGFT 96 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCC--SSCSCSCEEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCC--CCCCcceEEEc
Confidence 4568999999999863 46899986422 33467889999998873 322 34444443211 11123488999
Q ss_pred ecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------------------------
Q 004218 537 FLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDC---------------------------------- 582 (767)
Q Consensus 537 ~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~---------------------------------- 582 (767)
+++|.++.+.... .++..++..++.++++.++.||+..
T Consensus 97 ~i~G~~l~~~~~~--------~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
T 3sg8_A 97 KIKGVPLTPLLLN--------NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGP 168 (304)
T ss_dssp CCCCEECCHHHHH--------TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHH
T ss_pred ccCCeECCccccc--------cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcc
Confidence 9999888754321 1777888889999999999999621
Q ss_pred ---------------------CCCeEeecCCCCCeeeCC--CCceEEccccchhhhhhhcC--CCcc------ccccccc
Q 004218 583 ---------------------EVPIVHCDLKPGNILLDE--DMTAKVGDFGLARSLLERIG--NQSS------ISSTHVL 631 (767)
Q Consensus 583 ---------------------~~~ivH~Dlkp~NIl~~~--~~~~kl~Dfg~a~~~~~~~~--~~~~------~~~~~~~ 631 (767)
+..++|+|++|.||++++ ...+.++||+.+........ .... .......
T Consensus 169 ~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 248 (304)
T 3sg8_A 169 QMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKI 248 (304)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHH
Confidence 135899999999999998 55688999999864321100 0000 0000000
Q ss_pred cCCCCccC-ccccCCCCCCCcccchhhhHHHHHHHhCCCCC
Q 004218 632 KGSIGYIP-PEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPT 671 (767)
Q Consensus 632 ~gt~~y~a-PE~~~~~~~~~~~Dv~slG~il~el~tg~~p~ 671 (767)
....+... |+.... .....+.|++|.++|.+.+|..+|
T Consensus 249 l~~Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 249 LNHYKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HHHHTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 00001111 111110 011258999999999999998875
No 414
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=3.9e-09 Score=99.35 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=33.8
Q ss_pred cCeEEccCCccccc----CCccccCCCCCCEEEC--cCCcCcccC----ccccCCCCCCCEEEccCCccc
Q 004218 132 LSKLYMGGNRFYGK----IPTSIGRLRSLTLLNL--SYNSISGEI----LTEIGQLQELQSLDLAGNQIS 191 (767)
Q Consensus 132 L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l--~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~ 191 (767)
|++|+|++|+|+.. +...+...++|++|+| ++|.|.... ...+...++|++|+|++|.+.
T Consensus 95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 55555555554421 2344555566777777 667666432 233444566777777777765
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.60 E-value=1.6e-07 Score=97.07 Aligned_cols=136 Identities=18% Similarity=0.110 Sum_probs=100.8
Q ss_pred CCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCC----CCceeEEeeeecCCcccceee
Q 004218 456 NFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRH----RNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 456 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h----~niv~~~~~~~~~~~~~~~~~ 531 (767)
.+...+.++.|..+.||++ +..+++|+... ......+.+|.++++.+.+ ..+.+++++ +..
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~--~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~---------~~~ 102 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKR--DSVRISQKRELELYRFLENCKLSYQIPAVVYQ---------SDR 102 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE---------CSS
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCc--HHHHHHHHHHHHHHHHHHhcCCCCCcceEEec---------CCc
Confidence 6667788999999999998 66789997642 2223567899998888865 223444443 123
Q ss_pred EEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC----------------------------
Q 004218 532 ALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCE---------------------------- 583 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~---------------------------- 583 (767)
++||||++|.++.+.... .++..+...++.+++..++.||+...
T Consensus 103 ~lvme~i~G~~l~~~~~~--------~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (320)
T 3r70_A 103 FNIMKYIKGERITYEQYH--------KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISI 174 (320)
T ss_dssp CEEEECCCCBCCCHHHHT--------TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCccccccccc--------cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHH
Confidence 899999999888743311 16777788888999999999886421
Q ss_pred --------------------------------CCeEeecCCCCCeeeCCCCceEEccccchhh
Q 004218 584 --------------------------------VPIVHCDLKPGNILLDEDMTAKVGDFGLARS 614 (767)
Q Consensus 584 --------------------------------~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 614 (767)
..++|+|++|.||+++.+..+.|+||+.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 175 LEKEQLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred HhhcccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 2359999999999999876679999998853
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=7.1e-09 Score=97.58 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=40.5
Q ss_pred ccCCCCCCEEECcCCcCccc----CccccCCCCCCCEEEc--cCCccccc----cCcCcccCCCCceeeCCCCcCC
Q 004218 150 IGRLRSLTLLNLSYNSISGE----ILTEIGQLQELQSLDL--AGNQISGS----IPNTLGNLKKLNQIDLSGNELA 215 (767)
Q Consensus 150 l~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L--~~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~ 215 (767)
+...++|++|+|++|.|... +...+...++|++|+| ++|.|... +...+...++|++|+|++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44456677777777777643 2344556667777777 66777633 2233444567777777777664
No 417
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.49 E-value=6.7e-07 Score=90.33 Aligned_cols=76 Identities=17% Similarity=0.069 Sum_probs=60.4
Q ss_pred CCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCC---CceeEEeeeecCCcccceeeEEEE
Q 004218 459 HENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHR---NLVKLITSCSSLDFKNMEFLALVY 535 (767)
Q Consensus 459 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~lv~ 535 (767)
..+.++.|.++.||++...+|+.++||+...........+.+|++.++.+.+. .+.+++++. ..++||
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~---------~~~lvm 89 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---------DRTLAM 89 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---------TTEEEE
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec---------CcEEEE
Confidence 35679999999999999888999999997543333456789999999999764 577777763 138999
Q ss_pred eecCCCCh
Q 004218 536 EFLGNGSL 543 (767)
Q Consensus 536 e~~~~gsL 543 (767)
||++++++
T Consensus 90 e~l~g~~~ 97 (288)
T 3d1u_A 90 EWVDERPP 97 (288)
T ss_dssp ECCCCCCC
T ss_pred EecccCCC
Confidence 99999875
No 418
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.36 E-value=1.6e-06 Score=88.67 Aligned_cols=136 Identities=16% Similarity=0.082 Sum_probs=95.2
Q ss_pred CCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCC---CceeEEeeeecCCcccceeeEEEEe
Q 004218 460 ENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHR---NLVKLITSCSSLDFKNMEFLALVYE 536 (767)
Q Consensus 460 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~lv~e 536 (767)
.+.++.|....||+. |..+++|+.. .......+.+|+++++.+.+. .+.+++.++. ...+..++|||
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~----~~~g~~~~v~e 93 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGK----RSDGNPFVGYR 93 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEE----CTTSCEEEEEE
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecc----cCCCceEEEEe
Confidence 356888888999998 5678899853 223456788999999998642 3556666543 12344589999
Q ss_pred ecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC-----------------------------------
Q 004218 537 FLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHND----------------------------------- 581 (767)
Q Consensus 537 ~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~----------------------------------- 581 (767)
|++|.++.+.... .++..+...++.++++.|+.||+.
T Consensus 94 ~i~G~~l~~~~~~--------~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~ 165 (306)
T 3tdw_A 94 KVQGQILGEDGMA--------VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLD 165 (306)
T ss_dssp CCCSEECHHHHHT--------TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSC
T ss_pred ccCCeECchhhhh--------hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccc
Confidence 9999888763211 145556666666677666666653
Q ss_pred ----------------------CCCCeEeecCCCCCeeeCC---CCc-eEEccccchh
Q 004218 582 ----------------------CEVPIVHCDLKPGNILLDE---DMT-AKVGDFGLAR 613 (767)
Q Consensus 582 ----------------------~~~~ivH~Dlkp~NIl~~~---~~~-~kl~Dfg~a~ 613 (767)
.+..++|+|++|.||+++. ++. +.|+||+.+.
T Consensus 166 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~ 223 (306)
T 3tdw_A 166 ESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAA 223 (306)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCE
T ss_pred hhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcC
Confidence 1235699999999999987 455 4899999875
No 419
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=1.3e-07 Score=93.36 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=53.9
Q ss_pred cCCCceeEEEccCCCCCCC--CCcccccCcccceeeccCccccCCCCchhhccC--CceEEEcCCcccCCCCCc------
Q 004218 272 GMLGNVVTIDLSANGLSGN--LPNSFKNCKSLEKLLMANNKFSGPIPNILAELK--GLEVLDLSSNKLSGSIPS------ 341 (767)
Q Consensus 272 ~~l~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~------ 341 (767)
.++++|+.|+|++|+|++. +|..+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4567788888888888763 345666777888888888877754 2334444 778888888887765552
Q ss_pred -cccccccCceEe
Q 004218 342 -DLQNLRALRSLN 353 (767)
Q Consensus 342 -~~~~l~~L~~L~ 353 (767)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 355667777665
No 420
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=3.4e-08 Score=97.42 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=23.5
Q ss_pred cCCCCCCEEEcccccCcc--cCCccCCCCCCCcEEeecCcccc
Q 004218 48 HNLTNIQIIRMAHNLLEG--TVPPGLGNLPFLKMYNIGFNKIV 88 (767)
Q Consensus 48 ~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~ 88 (767)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 445666666666666664 23344445566666666666654
No 421
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.24 E-value=2.5e-06 Score=85.79 Aligned_cols=134 Identities=16% Similarity=0.067 Sum_probs=95.5
Q ss_pred ccccccce-EEEEEEeC-CCcEEEEEEeeccCCcchhhHHHHHHHHhcCC-CCCceeEEeeeecCCcccceeeEEEEeec
Q 004218 462 LIGSGSFG-SVYKGYLR-EGISVAVKVLDIESTGTWKSFFAECEALRNTR-HRNLVKLITSCSSLDFKNMEFLALVYEFL 538 (767)
Q Consensus 462 ~lg~G~~g-~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~~lv~e~~ 538 (767)
.+..|..+ .||+.... ++..+++|+-.. .....+.+|..+++.+. +--+.++++++.. .+..++|||++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~-----~~~~~lvme~l 102 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRT-----PDDAWLLTTAI 102 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEE-----TTEEEEEEECC
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEE-----CCeEEEEEEee
Confidence 45556655 68988865 467899998653 23456778999888774 3336677777543 34569999999
Q ss_pred CCCChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC------------------------------------
Q 004218 539 GNGSLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDC------------------------------------ 582 (767)
Q Consensus 539 ~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------------------------------------ 582 (767)
+|.++.+...... .....++.+++..++.||+..
T Consensus 103 ~G~~~~~~~~~~~----------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (272)
T 4gkh_A 103 PGKTAFQVLEEYP----------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERN 172 (272)
T ss_dssp CSEEHHHHHHHCG----------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGT
T ss_pred CCccccccccCCH----------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhcccccc
Confidence 9988887654321 233456777888888888531
Q ss_pred -------------------CCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 583 -------------------EVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 583 -------------------~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
+..++|+|+.+.||+++.++.+-|+||+.+.
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 173 GWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp TCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred chHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 0138999999999999988777899998874
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.20 E-value=4.1e-06 Score=87.73 Aligned_cols=78 Identities=9% Similarity=0.056 Sum_probs=55.4
Q ss_pred CCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCC--ceeEEeeeecCCcccceeeEEE
Q 004218 457 FSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRN--LVKLITSCSSLDFKNMEFLALV 534 (767)
Q Consensus 457 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~~~~~~~~~~~~~~lv 534 (767)
....+.++.|....+|+... +++.+++|+.... ..+.+|+.+++.+.... +.++++++... .+..++|
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~----~g~~~lv 112 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFS----ESLTYCI 112 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESS----SSCEEEE
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCC----CCCeEEE
Confidence 33456789999999999886 4788999987421 35788999888885433 45666654321 1456899
Q ss_pred EeecCCCChh
Q 004218 535 YEFLGNGSLG 544 (767)
Q Consensus 535 ~e~~~~gsL~ 544 (767)
|||++|.++.
T Consensus 113 ~e~l~G~~l~ 122 (362)
T 3ovc_A 113 SRRAQGVTLQ 122 (362)
T ss_dssp EECCCSEETT
T ss_pred EEecCCCCcc
Confidence 9999986664
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.19 E-value=4.8e-06 Score=87.45 Aligned_cols=84 Identities=10% Similarity=-0.024 Sum_probs=56.1
Q ss_pred CCcc-ccccceEEEEEEeC-------CCcEEEEEEeeccC---CcchhhHHHHHHHHhcCC-C--CCceeEEeeeecCCc
Q 004218 460 ENLI-GSGSFGSVYKGYLR-------EGISVAVKVLDIES---TGTWKSFFAECEALRNTR-H--RNLVKLITSCSSLDF 525 (767)
Q Consensus 460 ~~~l-g~G~~g~V~~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~-h--~niv~~~~~~~~~~~ 525 (767)
.+.| +.|....+|+.... +++.+++|+..... ......+.+|+.+++.+. + -.+.+++.++.....
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88889999998754 26689999865322 112356778998888773 2 356777777543211
Q ss_pred ccceeeEEEEeecCCCChhh
Q 004218 526 KNMEFLALVYEFLGNGSLGD 545 (767)
Q Consensus 526 ~~~~~~~lv~e~~~~gsL~~ 545 (767)
.+..++||||++|.++.+
T Consensus 105 --~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 --LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp --TSSCEEEEECCCCBCCCB
T ss_pred --cCCceEEEEecCCCChhh
Confidence 134579999999977654
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=9.5e-07 Score=80.56 Aligned_cols=81 Identities=12% Similarity=0.132 Sum_probs=37.6
Q ss_pred cCeEEccCCcccccCCccccCCCCCCEEECcCCc-CcccCccccCCC----CCCCEEEccCCc-cccccCcCcccCCCCc
Q 004218 132 LSKLYMGGNRFYGKIPTSIGRLRSLTLLNLSYNS-ISGEILTEIGQL----QELQSLDLAGNQ-ISGSIPNTLGNLKKLN 205 (767)
Q Consensus 132 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~L~ 205 (767)
|++|++++|.|+...-..+.++++|++|+|++|. |++.....++.+ ++|++|+|++|. |++..-..+.++++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 5555555555544444444555555555555552 443333333332 245555555542 4432223344445555
Q ss_pred eeeCCCC
Q 004218 206 QIDLSGN 212 (767)
Q Consensus 206 ~L~L~~N 212 (767)
+|+|+++
T Consensus 143 ~L~L~~c 149 (176)
T 3e4g_A 143 YLFLSDL 149 (176)
T ss_dssp EEEEESC
T ss_pred EEECCCC
Confidence 5555544
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.94 E-value=5e-05 Score=80.88 Aligned_cols=75 Identities=20% Similarity=0.114 Sum_probs=48.4
Q ss_pred CCccccccceEEEEEEeC-CCcEEEEEEeeccCC-------cchhhHHHHHHHHhcCCC--C-CceeEEeeeecCCcccc
Q 004218 460 ENLIGSGSFGSVYKGYLR-EGISVAVKVLDIEST-------GTWKSFFAECEALRNTRH--R-NLVKLITSCSSLDFKNM 528 (767)
Q Consensus 460 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~h--~-niv~~~~~~~~~~~~~~ 528 (767)
.+.+|.|..+.||++... +++.|+||....... ....++..|.++++.+.. + .+.+++.+..
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d~------- 107 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDT------- 107 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEET-------
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEcC-------
Confidence 467999999999999754 468899998643211 233556789998887632 3 3445554421
Q ss_pred eeeEEEEeecCCC
Q 004218 529 EFLALVYEFLGNG 541 (767)
Q Consensus 529 ~~~~lv~e~~~~g 541 (767)
...++||||+++.
T Consensus 108 ~~~~lvmE~l~g~ 120 (397)
T 2olc_A 108 EMAVTVMEDLSHL 120 (397)
T ss_dssp TTTEEEECCCTTS
T ss_pred CccEEEEEeCCCc
Confidence 1237999999764
No 426
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=2.4e-06 Score=77.89 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=21.8
Q ss_pred cCeEEccCCc-ccccCCccccCCCCCCEEECcCCc
Q 004218 132 LSKLYMGGNR-FYGKIPTSIGRLRSLTLLNLSYNS 165 (767)
Q Consensus 132 L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n~ 165 (767)
|++|+|++|. |+...-..+.++++|++|+|+++.
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 6677776663 665444456667777777777764
No 427
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.92 E-value=1.2e-06 Score=81.44 Aligned_cols=122 Identities=12% Similarity=0.163 Sum_probs=71.1
Q ss_pred CccccCCCCCCEEEcccc-cCccc----CCccCCCCCCCcEEeecCccccCCCCCCccccccccCCCCCCEEECcCCcce
Q 004218 44 PGSLHNLTNIQIIRMAHN-LLEGT----VPPGLGNLPFLKMYNIGFNKIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFE 118 (767)
Q Consensus 44 ~~~l~~l~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 118 (767)
...+.+.+.|++|+|++| .|.+. +...+..-+.|+.|+|++|.+.. .+...+...|...++|+.|+|++|+|.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd--~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD--SEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH--HHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh--HHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 334455666777777664 66532 33445555667777777776643 223355556666677777777777776
Q ss_pred eecCchhhhh---ccccCeEEccCC---cccc----cCCccccCCCCCCEEECcCCcCc
Q 004218 119 GEIPESIGNL---SNVLSKLYMGGN---RFYG----KIPTSIGRLRSLTLLNLSYNSIS 167 (767)
Q Consensus 119 ~~~~~~~~~l---~~~L~~L~l~~n---~i~~----~~~~~l~~l~~L~~L~l~~n~i~ 167 (767)
......++.. ..+|++|+|++| .+.. .+...+...++|+.|+++.|.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 5444443332 112777777654 2332 23445566678888888777654
No 428
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.91 E-value=5e-05 Score=76.81 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=57.6
Q ss_pred CCCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCC---CCceeEEeeeecCCcccceeeE
Q 004218 456 NFSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRH---RNLVKLITSCSSLDFKNMEFLA 532 (767)
Q Consensus 456 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h---~niv~~~~~~~~~~~~~~~~~~ 532 (767)
+..-++.+|.|..+.||+....+|+.|++|+...........+..|++.|+.+.. --+.+++++.. -+
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~~---------~~ 86 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWDD---------RT 86 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEET---------TE
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEeccC---------ce
Confidence 3445677999999999999999999999998764444444567889998887732 23555555421 27
Q ss_pred EEEeecCCCCh
Q 004218 533 LVYEFLGNGSL 543 (767)
Q Consensus 533 lv~e~~~~gsL 543 (767)
+||||++++..
T Consensus 87 lv~e~l~~~~~ 97 (288)
T 3f7w_A 87 LAMEWVDERPP 97 (288)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEeecccCC
Confidence 89999987653
No 429
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.89 E-value=1.6e-06 Score=80.56 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=76.1
Q ss_pred ccCCCCCCCcEEeecCc-cccCCCCCCccccccccCCCCCCEEECcCCcceeecCchhhh----hccccCeEEccCCccc
Q 004218 69 PGLGNLPFLKMYNIGFN-KIVGSGDEGLSFITSLTNSTRLNFLAFDGNQFEGEIPESIGN----LSNVLSKLYMGGNRFY 143 (767)
Q Consensus 69 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~~L~~L~l~~n~i~ 143 (767)
..+.+-+.|++|+|++| +|.. .+...+...|...+.|+.|+|++|++.......+.. -.. |++|+|++|+|+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd--~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~t-L~~L~L~~N~Ig 111 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSK--ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS-LRVLNVESNFLT 111 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCH--HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSS-CCEEECCSSBCC
T ss_pred HHHhcCCCccEEECCCCCCCCH--HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCc-cCeEecCCCcCC
Confidence 34455577888888775 5532 223356667777788888888888887554444443 233 888888888887
Q ss_pred c----cCCccccCCCCCCEEECcCC---cCccc----CccccCCCCCCCEEEccCCccc
Q 004218 144 G----KIPTSIGRLRSLTLLNLSYN---SISGE----ILTEIGQLQELQSLDLAGNQIS 191 (767)
Q Consensus 144 ~----~~~~~l~~l~~L~~L~l~~n---~i~~~----~~~~~~~l~~L~~L~L~~n~i~ 191 (767)
. .+.+++...+.|++|+|++| .+... +...+..-+.|+.|+++.|.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4 23445666677888888765 33321 2334555677888888777654
No 430
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.75 E-value=7.7e-05 Score=77.64 Aligned_cols=148 Identities=19% Similarity=0.148 Sum_probs=79.3
Q ss_pred CccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCC--CCCceeEEeeeecCC-cccceeeEEEEee
Q 004218 461 NLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTR--HRNLVKLITSCSSLD-FKNMEFLALVYEF 537 (767)
Q Consensus 461 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~-~~~~~~~~lv~e~ 537 (767)
+.++.|..+.||++...+| .+++|+.... ...+..|.++++.+. .-.+.+++....... ....+..+++|||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 3466677899999987655 5899988641 233445555555542 112333333110000 1123456899999
Q ss_pred cCCCChh--------------hhhcccCC-C--CCC-----CCCCHHHH-------------------------------
Q 004218 538 LGNGSLG--------------DWIHGERK-N--EHG-----NGLNFLER------------------------------- 564 (767)
Q Consensus 538 ~~~gsL~--------------~~l~~~~~-~--~~~-----~~l~~~~~------------------------------- 564 (767)
++|.++. ..++.... . ... ..-.|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986542 01111100 0 000 01122211
Q ss_pred HHHHHHHHHHHHHHHh----------CCCCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 565 LNIAIDIASALDYLHN----------DCEVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 565 ~~i~~~i~~~l~~LH~----------~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
..+..++..++++|++ ..+..++|||+++.||+++.++.+.|+||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 1112234445666653 023589999999999999888899999998774
No 431
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.41 E-value=0.00044 Score=70.33 Aligned_cols=74 Identities=9% Similarity=0.146 Sum_probs=45.3
Q ss_pred CCCCCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCc-eeEEeeeecCCcccceeeEEEE
Q 004218 457 FSHENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNL-VKLITSCSSLDFKNMEFLALVY 535 (767)
Q Consensus 457 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~~~~~~lv~ 535 (767)
+.-.+.|+.|....+|++ ..+++|+...... ......+|+.+++.+....+ .++++++.. .-++|+
T Consensus 20 ~~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~-~~~~r~~E~~~l~~l~~~g~~P~~~~~~~~-------~~~~v~ 86 (301)
T 3dxq_A 20 YTGPLERLGGLTNLVFRA-----GDLCLRIPGKGTE-EYINRANEAVAAREAAKAGVSPEVLHVDPA-------TGVMVT 86 (301)
T ss_dssp CCSCEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEECTT-------TCCEEE
T ss_pred ccceeEcCCcccccccee-----eeEEEECCCCCcc-ceeCHHHHHHHHHHHHHcCCCCceEEEECC-------CCEEEE
Confidence 333678999999999999 4689998754321 12233568877776632222 456655321 126899
Q ss_pred eec-CCCCh
Q 004218 536 EFL-GNGSL 543 (767)
Q Consensus 536 e~~-~~gsL 543 (767)
||+ +|.++
T Consensus 87 e~i~~g~~l 95 (301)
T 3dxq_A 87 RYIAGAQTM 95 (301)
T ss_dssp ECCTTCEEC
T ss_pred eecCCCccC
Confidence 999 66444
No 432
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.39 E-value=0.00067 Score=68.83 Aligned_cols=141 Identities=18% Similarity=0.104 Sum_probs=89.0
Q ss_pred CCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCC---CCCceeEEeeeecCCcccceeeEEEEe
Q 004218 460 ENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTR---HRNLVKLITSCSSLDFKNMEFLALVYE 536 (767)
Q Consensus 460 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~~~~~~~~lv~e 536 (767)
.+.++.|....+|+.... +..+++|+.... ....+..|++.|+.+. ...+.++++++.. .+..++|||
T Consensus 41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-----~g~~~lvme 111 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE-VQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNS-----QGHSFLLLE 111 (312)
T ss_dssp EEEECCSSSSEEEEEESS-SCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-----SSEEEEEEE
T ss_pred eEEeCCccceeeeEEEEC-CCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-----CCceEEEEE
Confidence 467899999999999864 678899987532 3456788988888773 3567788877542 245699999
Q ss_pred ecCCCChhh-----------hhcccCC-CC---------------CCCCCCHHHHH---HHHH----------------H
Q 004218 537 FLGNGSLGD-----------WIHGERK-NE---------------HGNGLNFLERL---NIAI----------------D 570 (767)
Q Consensus 537 ~~~~gsL~~-----------~l~~~~~-~~---------------~~~~l~~~~~~---~i~~----------------~ 570 (767)
|+++.++.. .++.... .. ....-+|.+.. ++.. +
T Consensus 112 ~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~ 191 (312)
T 3jr1_A 112 ALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDL 191 (312)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHH
T ss_pred eccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 999876421 1222111 00 01112454332 1111 1
Q ss_pred HHHH-HHHHHh-CCCCCeEeecCCCCCeeeCCCCceEEcccc
Q 004218 571 IASA-LDYLHN-DCEVPIVHCDLKPGNILLDEDMTAKVGDFG 610 (767)
Q Consensus 571 i~~~-l~~LH~-~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 610 (767)
++.. ...|.. ..++.++|+|+.+.|++++.++ +.|+|++
T Consensus 192 l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 192 IVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 1111 223421 2245899999999999999887 8899984
No 433
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.32 E-value=0.0006 Score=72.97 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=47.3
Q ss_pred CCeEeecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccC--CCCccCccccCCC---CCCCcccchhhh
Q 004218 584 VPIVHCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKG--SIGYIPPEYGLGE---KPSTAGDVYSFG 658 (767)
Q Consensus 584 ~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~---~~~~~~Dv~slG 658 (767)
..++|||++|.||+++.++ ++++||+.+..-.....- ....+ ...|++|+..... ......++.+..
T Consensus 232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dl-------a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDI-------GAYLGNLILAFFAQDGHATQENDRKEYKQWILRTI 303 (420)
T ss_dssp CEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHH-------HHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHH
T ss_pred CeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHH-------HHHHHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 4899999999999998876 999999988643221100 00000 1235666654311 112234556778
Q ss_pred HHHHHHHhCC
Q 004218 659 VMLLEIFTGM 668 (767)
Q Consensus 659 ~il~el~tg~ 668 (767)
..+|+.+++.
T Consensus 304 ~~~~~~y~~~ 313 (420)
T 2pyw_A 304 EQTWNLFNKR 313 (420)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 434
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.30 E-value=0.0014 Score=67.75 Aligned_cols=144 Identities=13% Similarity=0.048 Sum_probs=73.5
Q ss_pred CccccccceE-EEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCC--CCceeEEeeeecCCcccceeeEEEEee
Q 004218 461 NLIGSGSFGS-VYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRH--RNLVKLITSCSSLDFKNMEFLALVYEF 537 (767)
Q Consensus 461 ~~lg~G~~g~-V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~~~~~~~~~~~~~~~~~~lv~e~ 537 (767)
+.++.|.... +|+....+++.+++|...... ...+..|+++++.+.. -.+.+++.+.. ..+ +++||+
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~---~~~~~~e~~~l~~L~~~g~~vP~v~~~d~-----~~g--~ll~e~ 93 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE---GGDTQPFVDLAQYLRNLDISAPEIYAEEH-----ARG--LLLIED 93 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT---TCCSHHHHHHHHHHHHTTCBCCCEEEEET-----TTT--EEEECC
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC---CccccHHHHHHHHHHhCCCCCCceeeecC-----CCC--EEEEee
Confidence 4566665554 667765446778888654321 1344567777766632 23556666522 112 689999
Q ss_pred cCCCChhhhhcccCCC--------------------CCCCCCCHHHHH-------H-------------HHHHHHHHHHH
Q 004218 538 LGNGSLGDWIHGERKN--------------------EHGNGLNFLERL-------N-------------IAIDIASALDY 577 (767)
Q Consensus 538 ~~~gsL~~~l~~~~~~--------------------~~~~~l~~~~~~-------~-------------i~~~i~~~l~~ 577 (767)
+++.++.+++...... ..-..++..... . ....+...++.
T Consensus 94 l~~~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 173 (333)
T 3csv_A 94 LGDALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQ 173 (333)
T ss_dssp CCSCBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred CCCcchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9877776554321100 000112211100 0 00111122222
Q ss_pred HH---hCCCCCeEeecCCCCCeeeCCC----CceEEccccchhh
Q 004218 578 LH---NDCEVPIVHCDLKPGNILLDED----MTAKVGDFGLARS 614 (767)
Q Consensus 578 LH---~~~~~~ivH~Dlkp~NIl~~~~----~~~kl~Dfg~a~~ 614 (767)
+. ...+..++|||+.+.||+++.+ +.+.++||+.+..
T Consensus 174 l~~~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 174 ILSAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp HHHHHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred HHHhcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 21 1124489999999999999874 6899999998853
No 435
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.28 E-value=0.0018 Score=66.60 Aligned_cols=167 Identities=18% Similarity=0.129 Sum_probs=90.9
Q ss_pred CCccCHHHHHHHhcCCCC-----CCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCC--Cce
Q 004218 442 PQMISYDELRRATGNFSH-----ENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHR--NLV 514 (767)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~-----~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~--niv 514 (767)
...++.+.+......|.+ ...++ |....||++...+|+.+++|...... .....+..|..+++.+... .+.
T Consensus 8 ~~~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp 85 (328)
T 1zyl_A 8 FQTLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVA 85 (328)
T ss_dssp CCCCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBC
T ss_pred CCCCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeec
Confidence 344566666655555533 23466 78889999887778789999985321 2345666788887776322 234
Q ss_pred eEEeeeecCC-cccceeeEEEEeecCCCChhh-----h---------hcccC---CCCCCCCCCHHHH------------
Q 004218 515 KLITSCSSLD-FKNMEFLALVYEFLGNGSLGD-----W---------IHGER---KNEHGNGLNFLER------------ 564 (767)
Q Consensus 515 ~~~~~~~~~~-~~~~~~~~lv~e~~~~gsL~~-----~---------l~~~~---~~~~~~~l~~~~~------------ 564 (767)
+++.. .... ....+..+++|||++|.++.. + ++... ........++...
T Consensus 86 ~~~~~-~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (328)
T 1zyl_A 86 APVAF-NGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDAT 164 (328)
T ss_dssp CCCCB-TTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCS
T ss_pred ceeec-CCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcC
Confidence 44432 1100 112345678999998854321 0 11100 0000111222111
Q ss_pred ----------HHHHHHHHHHHHHHHh-CCCCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 565 ----------LNIAIDIASALDYLHN-DCEVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 565 ----------~~i~~~i~~~l~~LH~-~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
...+.+++..+...-. ..+..++|||+++.||+++ + .+.++||+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~ 222 (328)
T 1zyl_A 165 LIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR 222 (328)
T ss_dssp SSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence 1111222222222211 1234789999999999999 4 89999998875
No 436
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.16 E-value=0.0024 Score=65.43 Aligned_cols=167 Identities=17% Similarity=0.112 Sum_probs=90.0
Q ss_pred ccCHHHHHHHhcCCCCC-----CccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCC--ceeE
Q 004218 444 MISYDELRRATGNFSHE-----NLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRN--LVKL 516 (767)
Q Consensus 444 ~~~~~~~~~~~~~~~~~-----~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~ 516 (767)
.++.+++.....+|.+. +.++.|....+|+....+| .+++|+.... .....+..|+.+++.+.... +.++
T Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~ 82 (322)
T 2ppq_A 6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLP 82 (322)
T ss_dssp CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCB
T ss_pred cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCcc
Confidence 45667777777777652 3466788899999987655 6889988642 12345567777777663212 2333
Q ss_pred EeeeecCC-cccceeeEEEEeecCCCChhh--------------hhcccCCC-CCC--CCC---CHHHHHH---------
Q 004218 517 ITSCSSLD-FKNMEFLALVYEFLGNGSLGD--------------WIHGERKN-EHG--NGL---NFLERLN--------- 566 (767)
Q Consensus 517 ~~~~~~~~-~~~~~~~~lv~e~~~~gsL~~--------------~l~~~~~~-~~~--~~l---~~~~~~~--------- 566 (767)
+....... ....+..+++|+|++|..+.. .++..... ... ... .|.....
T Consensus 83 ~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 162 (322)
T 2ppq_A 83 LPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEV 162 (322)
T ss_dssp CCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGT
T ss_pred cCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhh
Confidence 32210000 011244689999999865421 01111000 000 001 1222100
Q ss_pred ---HHHHHHHHHHHHHhC----CCCCeEeecCCCCCeeeCCCCceEEccccchh
Q 004218 567 ---IAIDIASALDYLHND----CEVPIVHCDLKPGNILLDEDMTAKVGDFGLAR 613 (767)
Q Consensus 567 ---i~~~i~~~l~~LH~~----~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 613 (767)
+...+...++++++. .+.+++|+|+++.||++++++.+.++||+.+.
T Consensus 163 ~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 163 EKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp STTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 011234445555531 23479999999999999987666899998874
No 437
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=97.15 E-value=0.0015 Score=70.02 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=47.7
Q ss_pred CCccccccceEEEEEEeCC-CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCc-eeEEeeeecCCcccceeeEEEEee
Q 004218 460 ENLIGSGSFGSVYKGYLRE-GISVAVKVLDIESTGTWKSFFAECEALRNTRHRNL-VKLITSCSSLDFKNMEFLALVYEF 537 (767)
Q Consensus 460 ~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~~~~~~lv~e~ 537 (767)
.+.|+.|-...+|++...+ +..+++|+..... .....-.+|..+++.+...++ .++++.+ . + ..||||
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-~~~idR~~E~~vl~~L~~~gl~P~ll~~~-----~-~---G~v~e~ 182 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKT-DEIINREREKKISCILYNKNIAKKIYVFF-----T-N---GRIEEF 182 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-C-CSCSCHHHHHHHHHHHTTSSSBCCEEEEE-----T-T---EEEEEC
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCCh-hhhcCHHHHHHHHHHHHhcCCCCCEEEEe-----C-C---eEEEEe
Confidence 3568888899999999875 5789999874322 111222578888888864444 5666653 1 1 359999
Q ss_pred cCCCCh
Q 004218 538 LGNGSL 543 (767)
Q Consensus 538 ~~~gsL 543 (767)
++|.++
T Consensus 183 I~G~~l 188 (458)
T 2qg7_A 183 MDGYAL 188 (458)
T ss_dssp CCSEEC
T ss_pred eCCccC
Confidence 988554
No 438
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.08 E-value=0.00098 Score=71.23 Aligned_cols=73 Identities=21% Similarity=0.113 Sum_probs=49.1
Q ss_pred CCccccccceEEEEEEeCC--------CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCC-ceeEEeeeecCCccccee
Q 004218 460 ENLIGSGSFGSVYKGYLRE--------GISVAVKVLDIESTGTWKSFFAECEALRNTRHRN-LVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 460 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~~~~~~~ 530 (767)
.+.|+.|....+|++...+ ++.|++|+.... .....+.+|..+++.+...+ ..++++.+. +
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~-----~--- 147 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS-----G--- 147 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET-----T---
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC-----C---
Confidence 3568888899999998653 578999988421 11245668998888774333 356666532 1
Q ss_pred eEEEEeecCCCCh
Q 004218 531 LALVYEFLGNGSL 543 (767)
Q Consensus 531 ~~lv~e~~~~gsL 543 (767)
.+|+||++|.++
T Consensus 148 -g~v~e~l~G~~l 159 (429)
T 1nw1_A 148 -GRLEEYIPSRPL 159 (429)
T ss_dssp -EEEECCCCEEEC
T ss_pred -CEEEEEeCCccc
Confidence 489999987444
No 439
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.02 E-value=0.0017 Score=67.81 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=83.1
Q ss_pred CccccccceEEEEEEeC--------CCcEEEEEEeeccCCcchhhHHHHHHHHhcCC-CCCceeEEeeeecCCcccceee
Q 004218 461 NLIGSGSFGSVYKGYLR--------EGISVAVKVLDIESTGTWKSFFAECEALRNTR-HRNLVKLITSCSSLDFKNMEFL 531 (767)
Q Consensus 461 ~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~ 531 (767)
+.+..|-...+|++... +++.|++|+... .........+|.++++.+. +.-..++++++. +
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~-~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~-----~---- 125 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA-ILQGVDSLVLESVMFAILAERSLGPQLYGVFP-----E---- 125 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET-----T----
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC-ccchHHHHHHHHHHHHHHHhcCCCCeEEEEcC-----C----
Confidence 56777888899999864 257899998632 2233456668999888773 222356666532 2
Q ss_pred EEEEeecCCCChhhh-h----------------cccCCCCCCCCCC--HHHHHHHHHHHHH-------------------
Q 004218 532 ALVYEFLGNGSLGDW-I----------------HGERKNEHGNGLN--FLERLNIAIDIAS------------------- 573 (767)
Q Consensus 532 ~lv~e~~~~gsL~~~-l----------------~~~~~~~~~~~l~--~~~~~~i~~~i~~------------------- 573 (767)
.+||||++|.++..- + +.... ..+.... +.++.++..++..
T Consensus 126 g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~-~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (379)
T 3feg_A 126 GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEM-PFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKD 204 (379)
T ss_dssp EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCC-SSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHH
T ss_pred ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCC-CCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHH
Confidence 389999998655421 1 11100 1111222 4555555544422
Q ss_pred HHHHHH----hC-CCCCeEeecCCCCCeeeCCC----CceEEccccchh
Q 004218 574 ALDYLH----ND-CEVPIVHCDLKPGNILLDED----MTAKVGDFGLAR 613 (767)
Q Consensus 574 ~l~~LH----~~-~~~~ivH~Dlkp~NIl~~~~----~~~kl~Dfg~a~ 613 (767)
.+..|. .. .+..++|+|+.+.||+++.+ +.+.++||..+.
T Consensus 205 ~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 205 EMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 223332 21 23478999999999999876 789999998885
No 440
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.81 E-value=0.0014 Score=68.82 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=43.8
Q ss_pred CccccccceEEEEEEeCC---------CcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCC-ceeEEeeeecCCccccee
Q 004218 461 NLIGSGSFGSVYKGYLRE---------GISVAVKVLDIESTGTWKSFFAECEALRNTRHRN-LVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 461 ~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~~~~~~~ 530 (767)
+.++.|....+|++...+ ++.+++|+..... ........|.++++.+...+ +.++++.. . +
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~-~~~~~~~~E~~~l~~L~~~g~~P~~~~~~-----~-~-- 109 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV-DELYNTISEFEVYKTMSKYKIAPQLLNTF-----N-G-- 109 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG-GGTSCHHHHHHHHHHHHHTTSSCCEEEEE-----T-T--
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc-cceecHHHHHHHHHHHHhcCCCCceEEec-----C-C--
Confidence 467788888999998754 2689999875322 22223457888887774333 44666542 1 1
Q ss_pred eEEEEeecCCCCh
Q 004218 531 LALVYEFLGNGSL 543 (767)
Q Consensus 531 ~~lv~e~~~~gsL 543 (767)
++||||++|.++
T Consensus 110 -~~v~e~i~G~~l 121 (369)
T 3c5i_A 110 -GRIEEWLYGDPL 121 (369)
T ss_dssp -EEEEECCCSEEC
T ss_pred -cEEEEEecCCcC
Confidence 689999988543
No 441
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.71 E-value=0.0061 Score=62.87 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=27.6
Q ss_pred CCeEeecCCCCCeeeCCCCceEEccccchhh
Q 004218 584 VPIVHCDLKPGNILLDEDMTAKVGDFGLARS 614 (767)
Q Consensus 584 ~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 614 (767)
..++|+|+.+.||+++.++.+.++||+.+..
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 4799999999999999888899999987753
No 442
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.0023 Score=55.43 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=32.6
Q ss_pred EEeCCCCeee-ecCCCccccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccccC
Q 004218 6 YLGLASNQLW-GEIPYDVGDKLPNLLGFNFCFNKFTGKIPGSLHNLTNIQIIRMAHNLL 63 (767)
Q Consensus 6 ~L~l~~n~l~-~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 63 (767)
+++.++++++ ..+|..+. ++|++|+|++|+|+...++.|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5566666663 25665443 2566666666666644445566666666666666654
No 443
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.53 E-value=0.01 Score=55.26 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=66.7
Q ss_pred ChhhhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchhhhhhhcCC
Q 004218 542 SLGDWIHGERKNEHGNGLNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLARSLLERIGN 621 (767)
Q Consensus 542 sL~~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~ 621 (767)
||.+++.... .+++++++|.++.|.+.+|.-.-.+. .-..+=+.|..|++..+|.+...+ +.+.
T Consensus 34 SL~eIL~~~~-----~PlsEEqaWALc~Qc~~~L~~~~~~~--~~~~~i~~~~~i~l~~dG~V~f~~-~~s~-------- 97 (229)
T 2yle_A 34 SLEEILRLYN-----QPINEEQAWAVCYQCCGSLRAAARRR--QPRHRVRSAAQIRVWRDGAVTLAP-AADD-------- 97 (229)
T ss_dssp EHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCSGGGEEEETTSCEEECC-C-----------
T ss_pred cHHHHHHHcC-----CCcCHHHHHHHHHHHHHHHHhhhhcc--cCCceecCCcceEEecCCceeccc-cccc--------
Confidence 7999998764 56999999999999999988772210 111223456888999999888764 2111
Q ss_pred CccccccccccCCCCccCccccCCCCCCCcccchhhhHHHHHHHhCCCC
Q 004218 622 QSSISSTHVLKGSIGYIPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSP 670 (767)
Q Consensus 622 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p 670 (767)
.....+.|||... ...+.+.=|||+|+++|..+--..|
T Consensus 98 ----------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 ----------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp -------------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred ----------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0123467888753 3456778899999999999865554
No 444
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0036 Score=54.13 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=16.7
Q ss_pred CCEEEccCCccccccCcCcccCCCCceeeCCCCcC
Q 004218 180 LQSLDLAGNQISGSIPNTLGNLKKLNQIDLSGNEL 214 (767)
Q Consensus 180 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l 214 (767)
|++|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433334444445555555555544
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.22 E-value=0.012 Score=61.46 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=82.4
Q ss_pred CccccccceEEEEEEeCC--------CcEEEEEEeeccCCc-----------c-------hhhHHHHHHHHhcCC-CCCc
Q 004218 461 NLIGSGSFGSVYKGYLRE--------GISVAVKVLDIESTG-----------T-------WKSFFAECEALRNTR-HRNL 513 (767)
Q Consensus 461 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~-----------~-------~~~~~~e~~~l~~l~-h~ni 513 (767)
+.+..|-...+|++...+ ++.|.+++.-..... + .+....|..+++.+. +--.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 457778888999998753 368999987432111 0 112235888887774 3335
Q ss_pred eeEEeeeecCCcccceeeEEEEeecCCCChhh--hh---------------cccCCCCCCCCCC--HHHHHHHHHHHH--
Q 004218 514 VKLITSCSSLDFKNMEFLALVYEFLGNGSLGD--WI---------------HGERKNEHGNGLN--FLERLNIAIDIA-- 572 (767)
Q Consensus 514 v~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~--~l---------------~~~~~~~~~~~l~--~~~~~~i~~~i~-- 572 (767)
.++++++ .+ .+|+||++|-+|.. +- +.... ....... +..+.++..++.
T Consensus 138 Pkl~~~~-----~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~-~~~~~~~~l~~~i~~~~~~l~~~ 207 (401)
T 3f2s_A 138 PKLYGIF-----PQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKM-PFNKEPKWLFGTMEKYLKEVLRI 207 (401)
T ss_dssp CCEEEEE-----TT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCC-SSCCSCCHHHHHHHHHHHHHHHC
T ss_pred CeEEEEe-----CC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCC-CCCCCcchHHHHHHHHHHHHHhc
Confidence 5667663 22 38999999755432 10 11100 0111122 334444443322
Q ss_pred --------------------HHH----HHHHhC-CCCCeEeecCCCCCeeeCCC------CceEEccccchh
Q 004218 573 --------------------SAL----DYLHND-CEVPIVHCDLKPGNILLDED------MTAKVGDFGLAR 613 (767)
Q Consensus 573 --------------------~~l----~~LH~~-~~~~ivH~Dlkp~NIl~~~~------~~~kl~Dfg~a~ 613 (767)
..+ +++... .+..++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 208 KFTEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp CCCSHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred cCcchhhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 112 223221 23478999999999999876 789999998874
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.63 E-value=0.031 Score=59.06 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=84.6
Q ss_pred CCccccccceEEEEEEeCC--------CcEEEEEEeeccCCcchhhHHHHHHHHhcCC-CCCceeEEeeeecCCccccee
Q 004218 460 ENLIGSGSFGSVYKGYLRE--------GISVAVKVLDIESTGTWKSFFAECEALRNTR-HRNLVKLITSCSSLDFKNMEF 530 (767)
Q Consensus 460 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 530 (767)
.+.+..|-...+|+....+ ++.|++|+..... .....-.+|.++++.+. +.-..++++.+. +
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~~------~-- 145 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADFP------E-- 145 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET------T--
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEcC------C--
Confidence 3567778888999998763 5789999874322 22223457888887774 222455555421 1
Q ss_pred eEEEEeecCCCChhh-hh----------------cccCC-----CC--CCCCCCHHHHHHHHHHHH--------------
Q 004218 531 LALVYEFLGNGSLGD-WI----------------HGERK-----NE--HGNGLNFLERLNIAIDIA-------------- 572 (767)
Q Consensus 531 ~~lv~e~~~~gsL~~-~l----------------~~~~~-----~~--~~~~l~~~~~~~i~~~i~-------------- 572 (767)
+.||||++|.++.. -+ +.... .. ...+.-+.++.++..++-
T Consensus 146 -~~I~efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~ 224 (424)
T 3mes_A 146 -GRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKEL 224 (424)
T ss_dssp -EEEEECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHH
T ss_pred -CEEEEEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhcccc
Confidence 78999999865421 00 00000 00 111122444444443322
Q ss_pred -----HHHHHHHh---------------------CCCCCeEeecCCCCCeeeCCCCceEEccccchhh
Q 004218 573 -----SALDYLHN---------------------DCEVPIVHCDLKPGNILLDEDMTAKVGDFGLARS 614 (767)
Q Consensus 573 -----~~l~~LH~---------------------~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 614 (767)
..+..|.+ ..+..++|+|+.+.||+ +.++.+.++||..+..
T Consensus 225 ~~~l~~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 225 YSKILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 22233321 11346899999999999 7788999999998853
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=93.89 E-value=0.13 Score=54.24 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=24.8
Q ss_pred CeEeecCCCCCeee------CCCCceEEccccchh
Q 004218 585 PIVHCDLKPGNILL------DEDMTAKVGDFGLAR 613 (767)
Q Consensus 585 ~ivH~Dlkp~NIl~------~~~~~~kl~Dfg~a~ 613 (767)
.++|+|+.+.||++ +++..++++||.+|.
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~ 279 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence 36799999999999 456789999999885
No 448
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.97 E-value=0.18 Score=33.29 Aligned_cols=17 Identities=18% Similarity=-0.013 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHcCCC
Q 004218 413 AGCFLIFWLIIVRKGKA 429 (767)
Q Consensus 413 ~~~~~~~~~~~~r~~~~ 429 (767)
+++++.+|++++|++++
T Consensus 25 ~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 25 LVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhhhhHhh
Confidence 33444445555555443
No 449
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=89.19 E-value=0.55 Score=30.82 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=3.3
Q ss_pred HHHHhHcC
Q 004218 420 WLIIVRKG 427 (767)
Q Consensus 420 ~~~~~r~~ 427 (767)
..+++|++
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 33444443
No 450
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=89.06 E-value=0.72 Score=42.92 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCcc
Q 004218 559 LNFLERLNIAIDIASALDYLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGYI 638 (767)
Q Consensus 559 l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y~ 638 (767)
.+..++++++.+|+....+++.+ +|--++|+|++++.++.+++.-.|+...+
T Consensus 78 ~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL~f~~~~~p~i~~RGik~~l----------------------- 129 (215)
T 4ann_A 78 FTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDELFFTRDGLPIAKTRGLQNVV----------------------- 129 (215)
T ss_dssp SCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGEEECTTSCEEESCCEETTTB-----------------------
T ss_pred cCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceEEEcCCCCEEEEEccCccCC-----------------------
Confidence 78899999999999998777643 78889999999999999999887765321
Q ss_pred CccccCCCCCCCcccchhhhHHHHHHHhCCCCCCCcccCC
Q 004218 639 PPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHESFAGE 678 (767)
Q Consensus 639 aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~ 678 (767)
+|. ..++..=.-.+=|++..+++++..|+....+.
T Consensus 130 ~P~-----~~~ee~fL~qyKAliiall~~K~~Fe~l~~G~ 164 (215)
T 4ann_A 130 DPL-----PVSEAEFLTRYKALVICAFNEKQSFDALVEGN 164 (215)
T ss_dssp SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHHHHHHSC
T ss_pred CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHHHHHcCh
Confidence 222 11222223457788999999999986654443
No 451
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=86.83 E-value=0.92 Score=29.82 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHcCCC
Q 004218 414 GCFLIFWLIIVRKGKA 429 (767)
Q Consensus 414 ~~~~~~~~~~~r~~~~ 429 (767)
++++.+|++++|+++.
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 3334445555554443
No 452
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=80.07 E-value=3.5 Score=38.45 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHHH-HHHhCCCCCeEeecCCCCCeeeCCCCceEEccccchhhhhhhcCCCccccccccccCCCCc
Q 004218 559 LNFLERLNIAIDIASALD-YLHNDCEVPIVHCDLKPGNILLDEDMTAKVGDFGLARSLLERIGNQSSISSTHVLKGSIGY 637 (767)
Q Consensus 559 l~~~~~~~i~~~i~~~l~-~LH~~~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~gt~~y 637 (767)
.+..++++++.+|+.... +++ .-+|--++|+|++++.++.+++.-.|.-..
T Consensus 82 ~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~f~~~~~p~i~hRGi~~~----------------------- 133 (219)
T 4ano_A 82 TTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLMFNRALEPFFLHVGVKES----------------------- 133 (219)
T ss_dssp SCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEEECTTCCEEESCCEETTT-----------------------
T ss_pred cCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceEEEeCCCcEEEEEcCCccc-----------------------
Confidence 788899999999998877 666 447888999999999999999988876532
Q ss_pred cCccccCCCCCCCcccchhhhHHHHHHHhCCCCCCC
Q 004218 638 IPPEYGLGEKPSTAGDVYSFGVMLLEIFTGMSPTHE 673 (767)
Q Consensus 638 ~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~ 673 (767)
++|.- .++..=.-.+=|++..++.++..|+.
T Consensus 134 lpP~e-----~~ee~fl~qyKali~all~~K~~Fe~ 164 (219)
T 4ano_A 134 LPPDE-----WDDERLLREVKATVLALTEGEYRFDE 164 (219)
T ss_dssp BSSCS-----CCHHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred CCCCC-----CCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 23322 11111233577888888888888744
No 453
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=71.57 E-value=0.49 Score=50.61 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=18.2
Q ss_pred CCCCccccccceEEEEEEeCC-CcEEEE------EEeecc--CCcchhhHHHHHHHHhcCCCCCceeEEeeee
Q 004218 458 SHENLIGSGSFGSVYKGYLRE-GISVAV------KVLDIE--STGTWKSFFAECEALRNTRHRNLVKLITSCS 521 (767)
Q Consensus 458 ~~~~~lg~G~~g~V~~~~~~~-~~~vav------K~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~ 521 (767)
.+.+.+| ||.||+|.+.. ..+||| |..... ..+....+.+|..+++..+|||+++.+++..
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 4456676 99999999864 467888 655321 2233456888999999999999999988753
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.64 E-value=16 Score=29.14 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=22.7
Q ss_pred cccCCccccCCCCCCEEECcCCcCcccCccccCCCCCCCEEEccC
Q 004218 143 YGKIPTSIGRLRSLTLLNLSYNSISGEILTEIGQLQELQSLDLAG 187 (767)
Q Consensus 143 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (767)
+.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344455555555555555543 3334445555555555555544
No 455
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=54.58 E-value=20 Score=20.27 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=15.9
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHhH
Q 004218 401 IIYIIVAIIAIIAGCFLIFWLIIVR 425 (767)
Q Consensus 401 ~~~i~~~~~~~i~~~~~~~~~~~~r 425 (767)
++-++.+.++.+..+.+.+|++..-
T Consensus 5 iweviaglvalltflafgfwlfkyl 29 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666777778877544
No 456
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.78 E-value=19 Score=28.78 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=25.4
Q ss_pred cCcccCccccCCCCCCCEEEccCCccccccCcCcccCCCCceeeCCC
Q 004218 165 SISGEILTEIGQLQELQSLDLAGNQISGSIPNTLGNLKKLNQIDLSG 211 (767)
Q Consensus 165 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 211 (767)
.++.+...+|.++.+|+.+.|-.+ ++.+...+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344445556666666666666554 2324455566666666665543
No 457
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=45.01 E-value=28 Score=21.83 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=15.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHhHcC
Q 004218 400 IIIYIIVAIIAIIAGCFLIFWLIIVRKG 427 (767)
Q Consensus 400 ~~~~i~~~~~~~i~~~~~~~~~~~~r~~ 427 (767)
.+..++.++.+.+++.++...++++|-.
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRRLI 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666655555555555555543
No 458
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=41.90 E-value=41 Score=24.25 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhHcCCCC
Q 004218 408 IIAIIAGCFLIFWLIIVRKGKAK 430 (767)
Q Consensus 408 ~~~~i~~~~~~~~~~~~r~~~~~ 430 (767)
.++.+.++++.+|++.+-++..+
T Consensus 23 avaalg~li~gcwcylrlqri~q 45 (90)
T 1zza_A 23 AIAALGALILGCWCYLRLQRISQ 45 (90)
T ss_dssp HHHHHHHHHHHHHTTTSSCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555666777766554433
No 459
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=26.77 E-value=73 Score=31.65 Aligned_cols=141 Identities=16% Similarity=0.038 Sum_probs=70.7
Q ss_pred CCccccccceEEEEEEeCCCcEEEEEEeeccCCcchhhHHHHHHHHhcCCCCCceeEEeeeec------------CC---
Q 004218 460 ENLIGSGSFGSVYKGYLREGISVAVKVLDIESTGTWKSFFAECEALRNTRHRNLVKLITSCSS------------LD--- 524 (767)
Q Consensus 460 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~------------~~--- 524 (767)
++....|. +.||.+.. ++..|+||.. ..-..+.+-.++...-.+.-|+..-+ .+... ..
T Consensus 74 I~~s~~Gs-tgvff~~t-d~~~~VVK~s---~~l~~E~l~s~LA~~LGlpiP~~Riv-~~~~~E~~e~~~~L~~~~~~~~ 147 (342)
T 1cja_A 74 IERSEKGT-EGLFFVET-ESGVFIVKRS---TNIESETFCSLLCMRLGLHAPKVRVV-SSNSEEGTNMLECLAAIDKSFR 147 (342)
T ss_dssp EEECCSTT-SCEEEEEE-SSCEEEEECC---TTHHHHHHHHHHHHHHTCCCCCEEEE-ESSSHHHHHHHHHHHHHCSSSC
T ss_pred EEeccCCC-CCeEEEEe-CCCEEEEeCc---HHHHHHHHHHHHHHHhCCCCCCeeEE-eeCcHHHHHHHHHHHHhhhhhH
Confidence 34445555 45665555 4778999943 12223334445544445566653222 22100 00
Q ss_pred ---cccceeeEEEEeecCCCChhhhhcccCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHhCCCC-CeEe-ecCCCCCee
Q 004218 525 ---FKNMEFLALVYEFLGNGSLGDWIHGERKNEHGNGLNFLERLNIAIDI--ASALDYLHNDCEV-PIVH-CDLKPGNIL 597 (767)
Q Consensus 525 ---~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~i--~~~l~~LH~~~~~-~ivH-~Dlkp~NIl 597 (767)
.......+++|||++|..|.+.-.... ...+..+ .+.++ +-++.....+..+ +.+. .--.+.|||
T Consensus 148 ~l~~l~~~~~~l~meyv~G~~L~e~~~~~~----~~~f~~~----~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL 219 (342)
T 1cja_A 148 VITTLANQANILLMELVRGITLNKLTTTSA----PEVLTKS----TMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIM 219 (342)
T ss_dssp HHHHHTTCSEEEEEECCCEEESTTCCSSSH----HHHSCHH----HHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEE
T ss_pred HHHHhhcccceehhhhcCCCccccchhhhh----hhhcCHH----HHHhhchhheehhhhcCCccCcccccCCCChhheE
Confidence 011224579999999866654322110 0012222 23332 3345555554322 2211 235789999
Q ss_pred eCCCC-ceEEccccchhh
Q 004218 598 LDEDM-TAKVGDFGLARS 614 (767)
Q Consensus 598 ~~~~~-~~kl~Dfg~a~~ 614 (767)
+++++ .+.++|-+.+..
T Consensus 220 ~~~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 220 LSERGATVVPIDSKIIPL 237 (342)
T ss_dssp EESBTTCEEECSCCCCCC
T ss_pred EeCCCCeEEEEcCCcccc
Confidence 98654 488999988853
No 460
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=25.44 E-value=1.1e+02 Score=21.08 Aligned_cols=8 Identities=38% Similarity=0.866 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 004218 415 CFLIFWLI 422 (767)
Q Consensus 415 ~~~~~~~~ 422 (767)
+++++|.+
T Consensus 26 ii~~LwK~ 33 (54)
T 2l8s_A 26 LILALWKI 33 (54)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 33444544
No 461
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.90 E-value=85 Score=21.61 Aligned_cols=8 Identities=25% Similarity=0.775 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 004218 415 CFLIFWLI 422 (767)
Q Consensus 415 ~~~~~~~~ 422 (767)
+++++|.+
T Consensus 29 i~~~LwK~ 36 (54)
T 2knc_A 29 LVLAMWKV 36 (54)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 33444544
Done!