BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004219
(767 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 165/332 (49%), Gaps = 26/332 (7%)
Query: 33 SFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWN 92
S + + ++NG+ ++ + IHYPR E W I+ K G + I YVFWN
Sbjct: 2 SLSEGTFEVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWN 61
Query: 93 GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEF 152
HEP +G Y F + D+ F +L Q+ G YV +R GPYVCAEW GG P WL I+
Sbjct: 62 FHEPEEGRYDFAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKL 121
Query: 153 RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAK 212
R + + + F ++ + ++ ++GG II Q+ENE+G + I P + +
Sbjct: 122 REQDPYYXERVKLFLNEVGKQLADLQI--SKGGNIIXVQVENEYGA--FGIDKPYISEIR 177
Query: 213 WAAQMAVGLNTGVPWVMCK-----QDDAPDPVINTCN----GFYCEKFVPNQNYKPKM-- 261
+ A G TGVP C +++A D ++ T N E+F + +P
Sbjct: 178 DXVKQA-GF-TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPL 235
Query: 262 -WTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGF-- 318
+E W+GWF +G+ TR AE+LV + SF + Y HGGT+FG G
Sbjct: 236 XCSEFWSGWFDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFP 294
Query: 319 ----VATSYDYDAPIDEYGLLNEPKWGHLRDL 346
TSYDYDAPI+E G + PK+ +R+L
Sbjct: 295 NFSPTCTSYDYDAPINESGKVT-PKYLEVRNL 325
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 29/101 (28%)
Query: 654 AQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXX 713
A+ QP +Y++TFN+ D L+ KG VW+NG +IGR+W
Sbjct: 504 AENQP-AYYRSTFNLNELGDTF-LNXXNWSKGXVWVNGHAIGRYWEIG------------ 549
Query: 714 XTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWG 754
P Q Y VP WLK N +++ + G
Sbjct: 550 --------------PQQTLY-VPGCWLKKGENEIIILDXAG 575
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 161/329 (48%), Gaps = 30/329 (9%)
Query: 39 VSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ 98
+ Y + + +GQ ISGSIHY R W D + K K GL+ IQTYV WN HEP
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 99 GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGP 158
G Y F + +D+ F++L + GL V LR GPY+CAEW GG P WL I R+ +
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 159 FKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMA 218
+ AA+ K+ ++ MK L GGP+I Q+ENE+G A Y ++ Q
Sbjct: 131 YLAAVDKWLGVLLPKMKP--LLYQNGGPVITVQVENEYG----SYFACDFDYLRF-LQKR 183
Query: 219 VGLNTGVPWVMCKQDDAPDPVIN--TCNGFY-----------CEKFVPNQNYKPK---MW 262
+ G V+ D A + G Y + F+ + +PK +
Sbjct: 184 FRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLIN 243
Query: 263 TEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG---FV 319
+E +TGW +G T E + S+ + G S +N YM+ GGTNF +G +
Sbjct: 244 SEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGAS-VNLYMFIGGTNFAYWNGANSPYA 302
Query: 320 A--TSYDYDAPIDEYGLLNEPKWGHLRDL 346
A TSYDYDAP+ E G L E K+ LR++
Sbjct: 303 AQPTSYDYDAPLSEAGDLTE-KYFALRNI 330
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 637 HTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALD----MGAMGKGMVWINGQ 692
H SG WA +S +Y F++P G L D KG VWING
Sbjct: 506 HRDSGHHDEAWAHNSS--NYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGF 563
Query: 693 SIGRHWP 699
++GR+WP
Sbjct: 564 NLGRYWP 570
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 145/315 (46%), Gaps = 42/315 (13%)
Query: 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRY 107
++G+ ++SG+IHY R PE W + K G + ++TYV WN HEP +G ++F+
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 108 DLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFT 167
DL +F+++ Q GLY +R P++CAEW +GG P WL + R+ + + A+ ++
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEAVGRYY 130
Query: 168 EKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPW 227
++++ + GG I++ Q+ENE+G D KAY + Q+ P
Sbjct: 131 DQLLPRLVPRL--LDNGGNILMMQVENEYGSYGED-----KAYLRAIRQLMEECGVTCPL 183
Query: 228 VMCKQDDAPDPVINTCNGFYCEKFVPNQNYK---------------------PKMWTEAW 266
D P E N+ P M E W
Sbjct: 184 FTS---DGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFW 240
Query: 267 TGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFV------- 319
GWF + + TR ++L +V ++ G IN YM+HGGTNFG +G
Sbjct: 241 DGWFNRWKEPIITRDPKELADAVREVLEQGS--INLYMFHGGTNFGFMNGCSARGTLDLP 298
Query: 320 -ATSYDYDAPIDEYG 333
TSYDYDA +DE G
Sbjct: 299 QVTSYDYDALLDEEG 313
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 47/196 (23%)
Query: 573 RPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGT-RDISKQKWTYKIGLKG 631
+ G++++ +L ++G N G F L KG+ G +D+ + + K
Sbjct: 437 KKGLSRLDILIENMGRVNYGHKF-------LADTQRKGIRTGVCKDLH-----FLLNWKH 484
Query: 632 EALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWING 691
L L +++++G + Q QP +Y F V D LD+ GKG+ ++NG
Sbjct: 485 YPLPL---DNPEKIDFSKGWT--QGQP-AFYAYDFTVEEPKDTY-LDLSEFGKGVAFVNG 537
Query: 692 QSIGRHWPXXXXXXXXXXXXXXXTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFE 751
Q++GR W P+ Y +P S+LK N +++FE
Sbjct: 538 QNLGRFWNVG--------------------------PTLSLY-IPHSYLKEGANRIIIFE 570
Query: 752 EWGGEPHWISLLKRTT 767
G I L ++ T
Sbjct: 571 TEGQYKEEIHLTRKPT 586
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 157/364 (43%), Gaps = 43/364 (11%)
Query: 34 FVKASVSYDHKAVIINGQKRILISGSIH-YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWN 92
++ V++D ++ +NG++ ++ SG +H Y ++ D+ +K K G + + YV W
Sbjct: 1 LLQKYVTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWA 60
Query: 93 GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEF 152
E G+Y + +DL F ++AG+Y+ R GPY+ AE + GGFP WL+ V GI
Sbjct: 61 LLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-L 119
Query: 153 RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF-GPVEWDIGAPGKAYA 211
RT + + A + I + + ++ T GGPIIL Q ENE+ G G P +Y
Sbjct: 120 RTSDEAYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYM 177
Query: 212 KWAAQMAVGLNTGVPWVM----CKQDDAPDPVINTCN---------GFYCEKFV--PNQN 256
++ A VP++ +AP + GF C P+ N
Sbjct: 178 QYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGN 237
Query: 257 Y--------------KPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQS-----GG 297
P E G F +G + A L R G
Sbjct: 238 LPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGV 297
Query: 298 SFINYYMYHGGTNFGRTS--GGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEP 355
+F+N YM GGTN+G GG+ TSYDY + I E + K+ L+ L K+
Sbjct: 298 AFLNLYMIFGGTNWGNLGHPGGY--TSYDYGSAISESRNITREKYSELKLLGNFAKVSPG 355
Query: 356 ALVS 359
LV+
Sbjct: 356 YLVA 359
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 156/369 (42%), Gaps = 47/369 (12%)
Query: 39 VSYDHKAVIINGQKRILISGSIH-YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT 97
V++D ++ ++G++ ++ SG +H + P ++ D+ K K G + + YV W E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 98 QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNG 157
G + + L F + +AG+Y+ R GPY+ AE + GGFP WL+ V G + RTD
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 158 PFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQM 217
+ A + I S++ ++ T GGP+IL Q ENE+ + P K Y ++
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 218 AVGLNTGVPWV--------------------MCKQD------DAPDPVINTCNGFYCEKF 251
A VP + + D D P NG
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 252 VPNQNYKPKM---WTEAWTGWFTEFG-------SAVPTRPAEDLVFSVARFIQSGGSFIN 301
+ N P E G F FG SA+ E + + + +G + N
Sbjct: 263 QDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYK--NNMAAGVTIFN 320
Query: 302 YYMYHGGTNFGRTS--GGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVS 359
YM GGTN+G GG+ TSYDY A I E ++ K+ L+ + +K+ P ++
Sbjct: 321 IYMTFGGTNWGNLGHPGGY--TSYDYGASIREDRRIDREKYSELKLQGQFLKVS-PGYIT 377
Query: 360 VDPTVKSLG 368
P + G
Sbjct: 378 ATPENATQG 386
>pdb|2WCD|A Chain A, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|B Chain B, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|C Chain C, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|D Chain D, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|E Chain E, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|F Chain F, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|G Chain G, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|H Chain H, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|I Chain I, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|J Chain J, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|K Chain K, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|L Chain L, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|M Chain M, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|N Chain N, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|O Chain O, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|P Chain P, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|Q Chain Q, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|R Chain R, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|S Chain S, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|T Chain T, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|U Chain U, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|V Chain V, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|W Chain W, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|X Chain X, Crystal Structure Of The Assembled Cytolysin A Pore
Length = 309
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 330 DEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLAN 389
DEY NE K +D+ IK+ + + ++ KSL + ++ FN+ SGK A +
Sbjct: 108 DEY---NEKKASAQKDI--LIKVLDDGITKLNEAQKSLLVSSQS--FNNASGKLLALDSQ 160
Query: 390 YDTTFSAKVSFGNAQYD 406
FS K S+ +Q D
Sbjct: 161 LTNDFSEKSSYFQSQVD 177
>pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea)
Length = 318
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 330 DEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLAN 389
DEY NE K +D+ IK+ + + ++ KSL + ++ FN+ SGK A +
Sbjct: 117 DEY---NEKKASAQKDI--LIKVLDDGITKLNEAQKSLLVSSQS--FNNASGKLLALDSQ 169
Query: 390 YDTTFSAKVSFGNAQYD 406
FS K S+ +Q D
Sbjct: 170 LTNDFSEKSSYFQSQVD 186
>pdb|3U43|A Chain A, Crystal Structure Of The Colicin E2 Dnase-Im2 Complex
Length = 94
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 452 ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH 511
E A+ DDN ++ +E++ D SD ++Y D DS EG +K ++ W A +
Sbjct: 26 EGATEEDDNKLVRE--FERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKE-----WRAAN 78
Query: 512 ALQVFING 519
F G
Sbjct: 79 GKSGFKQG 86
>pdb|2WPT|A Chain A, The Crystal Structure Of Im2 In Complex With Colicin E9
Dnase
Length = 86
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 452 ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH 511
E A+ DDN ++ +E++ D SD ++Y D DS EG +K ++ W A +
Sbjct: 26 EGATECDDNKLVRE--FERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKE-----WRAAN 78
Query: 512 ALQVFING 519
F G
Sbjct: 79 GKSGFKQG 86
>pdb|2NO8|A Chain A, Nmr Structure Analysis Of The Colicin Immuntiy Protein Im2
Length = 86
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 452 ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH 511
E A+ DDN ++ +E++ D SD ++Y D DS EG +K ++ W A +
Sbjct: 26 EGATEEDDNKLVRE--FERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKE-----WRAAN 78
Query: 512 ALQVFING 519
F G
Sbjct: 79 GKSGFKQG 86
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 20/111 (18%)
Query: 443 AFSWQSYIE------ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFL 496
+F W Y+E ST NTFT GL YL+ + T + +NE F+
Sbjct: 324 SFQWLKYLEYLNMDDNNIPSTKSNTFT--GLVSLKYLSLSKT-----FTSLQTLTNETFV 376
Query: 497 KNGQDPLLTIWSAGHALQVFINGQLS--GKRSIMTDMIMFLGANIACQQLT 545
PLLT+ + + NG S G+ I+ LG N Q+L+
Sbjct: 377 SLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILD-----LGLNEIEQKLS 422
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,432,911
Number of Sequences: 62578
Number of extensions: 1129741
Number of successful extensions: 2451
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2404
Number of HSP's gapped (non-prelim): 51
length of query: 767
length of database: 14,973,337
effective HSP length: 106
effective length of query: 661
effective length of database: 8,340,069
effective search space: 5512785609
effective search space used: 5512785609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)