Query 004219
Match_columns 767
No_of_seqs 272 out of 1572
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 19:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-187 3E-192 1617.6 64.6 705 32-767 23-728 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 3E-149 6E-154 1253.4 43.7 619 36-766 17-638 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 2.8E-88 6E-93 732.1 18.5 296 45-349 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 6.8E-36 1.5E-40 345.3 10.0 288 39-335 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 5.7E-21 1.2E-25 211.6 14.4 263 60-352 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 1.7E-12 3.7E-17 139.6 18.9 192 39-271 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 9.5E-11 2.1E-15 138.1 25.4 159 37-230 276-448 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.2 1.2E-10 2.7E-15 144.0 17.6 185 38-266 319-514 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.2 5E-10 1.1E-14 138.6 18.1 148 38-230 335-488 (1027)
10 PF13364 BetaGal_dom4_5: Beta- 99.0 9.7E-10 2.1E-14 102.4 6.3 73 656-754 33-109 (111)
11 COG3250 LacZ Beta-galactosidas 98.9 1.1E-08 2.3E-13 123.1 15.7 120 37-198 284-409 (808)
12 PF00150 Cellulase: Cellulase 98.9 2.3E-08 4.9E-13 105.1 15.1 160 49-230 4-171 (281)
13 PF13364 BetaGal_dom4_5: Beta- 98.4 6.3E-07 1.4E-11 83.6 8.2 84 468-588 24-110 (111)
14 PF03198 Glyco_hydro_72: Gluca 98.1 3.7E-05 8E-10 83.2 13.1 156 34-227 6-179 (314)
15 smart00633 Glyco_10 Glycosyl h 98.0 2.1E-05 4.5E-10 83.4 8.4 117 91-232 3-126 (254)
16 TIGR03356 BGL beta-galactosida 97.8 5.1E-05 1.1E-09 86.4 8.6 96 68-175 54-150 (427)
17 PF02837 Glyco_hydro_2_N: Glyc 97.7 0.00015 3.3E-09 71.2 9.7 99 475-609 64-164 (167)
18 PLN02705 beta-amylase 97.7 0.00011 2.4E-09 84.7 8.9 113 66-193 266-415 (681)
19 PLN02801 beta-amylase 97.7 0.00014 3.1E-09 82.6 9.1 80 66-151 35-126 (517)
20 PLN02905 beta-amylase 97.6 0.00015 3.3E-09 83.8 9.2 113 67-193 285-433 (702)
21 PLN00197 beta-amylase; Provisi 97.6 0.00017 3.7E-09 82.6 9.3 81 66-152 125-217 (573)
22 PLN02803 beta-amylase 97.6 0.00021 4.6E-09 81.6 9.2 83 66-152 105-197 (548)
23 PLN02161 beta-amylase 97.6 0.00025 5.5E-09 80.6 9.4 83 66-152 115-207 (531)
24 PF13204 DUF4038: Protein of u 97.5 0.00034 7.4E-09 75.8 9.8 225 43-297 2-274 (289)
25 PF07745 Glyco_hydro_53: Glyco 97.1 0.0015 3.2E-08 72.1 8.8 109 71-197 27-136 (332)
26 PF01373 Glyco_hydro_14: Glyco 97.0 0.00068 1.5E-08 75.9 5.3 114 69-192 17-152 (402)
27 COG3693 XynA Beta-1,4-xylanase 97.0 0.0029 6.4E-08 68.7 9.4 133 77-232 55-194 (345)
28 PF00232 Glyco_hydro_1: Glycos 96.8 0.0012 2.6E-08 75.9 5.0 96 68-175 58-155 (455)
29 PF14488 DUF4434: Domain of un 96.7 0.024 5.3E-07 56.7 12.7 137 63-229 15-159 (166)
30 PF00331 Glyco_hydro_10: Glyco 96.7 0.0017 3.7E-08 71.3 4.9 158 55-233 11-180 (320)
31 COG2730 BglC Endoglucanase [Ca 96.6 0.0065 1.4E-07 69.0 8.6 115 66-198 66-193 (407)
32 PRK09852 cryptic 6-phospho-bet 96.5 0.0022 4.7E-08 74.2 4.4 95 69-175 72-169 (474)
33 PF02837 Glyco_hydro_2_N: Glyc 96.5 0.004 8.6E-08 61.2 5.6 67 656-750 66-136 (167)
34 PRK15014 6-phospho-beta-glucos 96.4 0.009 1.9E-07 69.2 8.6 95 69-175 70-167 (477)
35 PLN02998 beta-glucosidase 96.4 0.0032 7E-08 73.2 4.9 99 69-175 83-183 (497)
36 PLN02814 beta-glucosidase 96.3 0.0041 8.9E-08 72.4 4.9 99 69-175 78-178 (504)
37 TIGR01233 lacG 6-phospho-beta- 96.2 0.015 3.3E-07 67.2 8.7 96 68-175 53-149 (467)
38 PRK09593 arb 6-phospho-beta-gl 96.1 0.0065 1.4E-07 70.4 5.5 100 68-175 73-175 (478)
39 PRK09589 celA 6-phospho-beta-g 96.1 0.0066 1.4E-07 70.3 5.0 100 68-175 67-169 (476)
40 PLN02849 beta-glucosidase 96.1 0.0064 1.4E-07 70.8 4.9 99 69-175 80-180 (503)
41 COG3867 Arabinogalactan endo-1 96.0 0.034 7.4E-07 59.9 9.6 116 69-197 64-182 (403)
42 PRK13511 6-phospho-beta-galact 96.0 0.021 4.4E-07 66.2 8.7 94 69-174 55-149 (469)
43 KOG2230 Predicted beta-mannosi 95.1 0.27 5.9E-06 57.0 12.9 150 43-232 327-494 (867)
44 PRK10150 beta-D-glucuronidase; 94.7 0.13 2.9E-06 61.2 10.1 99 476-611 62-179 (604)
45 PF14871 GHL6: Hypothetical gl 94.7 0.21 4.5E-06 48.3 9.4 97 72-173 4-122 (132)
46 COG2723 BglB Beta-glucosidase/ 94.5 0.046 9.9E-07 62.6 5.1 95 69-175 60-157 (460)
47 PRK10340 ebgA cryptic beta-D-g 94.3 0.17 3.7E-06 64.0 10.1 99 478-612 108-207 (1021)
48 PRK09525 lacZ beta-D-galactosi 92.4 0.47 1E-05 60.2 9.5 95 478-611 119-218 (1027)
49 PRK09936 hypothetical protein; 92.2 3.3 7.2E-05 45.1 14.3 59 63-127 33-92 (296)
50 TIGR01515 branching_enzym alph 91.6 2.6 5.5E-05 50.7 14.2 55 72-127 160-226 (613)
51 smart00642 Aamy Alpha-amylase 90.6 0.7 1.5E-05 46.2 6.9 66 69-134 20-97 (166)
52 PF02638 DUF187: Glycosyl hydr 90.5 0.79 1.7E-05 50.4 7.8 118 66-194 17-162 (311)
53 PRK14706 glycogen branching en 89.6 5.8 0.00013 48.0 14.7 51 74-127 174-237 (639)
54 COG3934 Endo-beta-mannanase [C 89.0 0.31 6.8E-06 55.7 3.2 157 45-219 3-168 (587)
55 PRK05402 glycogen branching en 88.3 6.1 0.00013 48.5 13.9 54 74-127 272-335 (726)
56 PF05913 DUF871: Bacterial pro 87.9 0.81 1.8E-05 51.4 5.6 73 56-134 2-74 (357)
57 TIGR00542 hxl6Piso_put hexulos 86.8 11 0.00023 40.3 13.2 98 67-190 15-113 (279)
58 COG1649 Uncharacterized protei 85.2 6.5 0.00014 45.1 10.9 122 66-197 62-210 (418)
59 PRK12568 glycogen branching en 84.4 19 0.00041 44.3 15.0 55 72-129 274-341 (730)
60 PF00128 Alpha-amylase: Alpha 84.4 1.2 2.7E-05 46.8 4.7 57 71-127 7-72 (316)
61 PLN02447 1,4-alpha-glucan-bran 83.1 28 0.00061 43.0 15.8 61 68-129 251-322 (758)
62 PRK09441 cytoplasmic alpha-amy 82.6 2.2 4.8E-05 49.6 6.1 60 68-127 19-101 (479)
63 PF14307 Glyco_tran_WbsX: Glyc 82.2 14 0.0003 41.3 11.9 140 65-231 55-197 (345)
64 PRK13210 putative L-xylulose 5 81.5 16 0.00034 38.8 11.7 132 68-225 16-149 (284)
65 PF01229 Glyco_hydro_39: Glyco 81.3 3.5 7.5E-05 48.1 7.1 66 57-128 28-105 (486)
66 PRK14705 glycogen branching en 81.2 29 0.00063 45.1 15.5 55 73-127 771-835 (1224)
67 COG0296 GlgB 1,4-alpha-glucan 81.0 3 6.5E-05 50.0 6.4 57 67-126 164-233 (628)
68 cd00019 AP2Ec AP endonuclease 80.5 18 0.00038 38.6 11.7 98 68-194 10-108 (279)
69 PRK01060 endonuclease IV; Prov 79.9 30 0.00065 36.8 13.2 93 70-191 14-109 (281)
70 smart00812 Alpha_L_fucos Alpha 79.8 1.2E+02 0.0026 34.7 22.9 242 65-357 81-337 (384)
71 TIGR02402 trehalose_TreZ malto 78.2 4 8.7E-05 48.4 6.4 54 71-127 114-180 (542)
72 TIGR02631 xylA_Arthro xylose i 77.7 32 0.0007 39.1 13.1 94 66-175 30-125 (382)
73 PRK13398 3-deoxy-7-phosphohept 77.3 12 0.00026 40.5 9.1 83 37-127 14-98 (266)
74 PF14683 CBM-like: Polysacchar 74.8 2.6 5.6E-05 42.4 3.1 63 681-754 91-153 (167)
75 PRK12313 glycogen branching en 74.7 6.2 0.00013 47.6 6.8 51 74-127 177-240 (633)
76 TIGR01531 glyc_debranch glycog 74.2 10 0.00022 49.3 8.6 111 45-161 104-234 (1464)
77 PF03659 Glyco_hydro_71: Glyco 74.1 15 0.00033 41.8 9.3 53 66-127 15-67 (386)
78 TIGR02403 trehalose_treC alpha 74.0 5 0.00011 47.5 5.7 57 69-127 28-95 (543)
79 PF13199 Glyco_hydro_66: Glyco 73.8 6.3 0.00014 46.9 6.3 78 68-145 118-210 (559)
80 PF02679 ComA: (2R)-phospho-3- 72.7 6.3 0.00014 42.1 5.5 52 67-128 83-134 (244)
81 PRK10785 maltodextrin glucosid 71.9 7.8 0.00017 46.5 6.7 54 71-127 182-246 (598)
82 COG3589 Uncharacterized conser 71.5 11 0.00024 41.9 7.1 72 56-134 4-76 (360)
83 PF01261 AP_endonuc_2: Xylose 71.3 6.9 0.00015 38.8 5.2 125 74-225 1-128 (213)
84 PLN02960 alpha-amylase 70.3 8.7 0.00019 47.8 6.6 57 71-127 420-486 (897)
85 TIGR02104 pulA_typeI pullulana 69.4 8.6 0.00019 46.2 6.3 55 72-127 168-249 (605)
86 PRK10933 trehalose-6-phosphate 68.3 11 0.00023 44.9 6.8 55 70-127 35-101 (551)
87 TIGR02456 treS_nterm trehalose 68.1 7.6 0.00017 45.9 5.5 56 69-127 29-96 (539)
88 PRK09856 fructoselysine 3-epim 68.1 78 0.0017 33.4 12.7 52 68-124 13-64 (275)
89 PRK09505 malS alpha-amylase; R 68.0 11 0.00024 46.0 6.8 58 70-127 232-312 (683)
90 PF13200 DUF4015: Putative gly 67.0 17 0.00037 40.3 7.5 111 66-177 11-136 (316)
91 KOG0496 Beta-galactosidase [Ca 66.9 4.7 0.0001 48.1 3.3 30 318-347 324-353 (649)
92 KOG0626 Beta-glucosidase, lact 66.5 12 0.00026 44.0 6.3 113 69-191 92-208 (524)
93 cd06593 GH31_xylosidase_YicI Y 65.8 22 0.00047 38.8 8.0 70 65-134 21-93 (308)
94 PF01791 DeoC: DeoC/LacD famil 65.5 2.5 5.4E-05 44.3 0.7 58 71-133 79-136 (236)
95 PRK09997 hydroxypyruvate isome 64.0 99 0.0022 32.5 12.4 42 70-125 17-58 (258)
96 KOG2024 Beta-Glucuronidase GUS 62.2 12 0.00027 40.3 5.0 81 475-556 84-181 (297)
97 PRK08673 3-deoxy-7-phosphohept 61.9 32 0.0007 38.5 8.5 76 45-127 86-164 (335)
98 smart00518 AP2Ec AP endonuclea 61.7 69 0.0015 33.8 10.8 92 70-191 12-104 (273)
99 TIGR02401 trehalose_TreY malto 61.3 19 0.00041 44.8 7.1 63 66-129 14-87 (825)
100 PRK13209 L-xylulose 5-phosphat 61.0 1.3E+02 0.0028 32.0 12.8 98 67-190 20-118 (283)
101 PRK14582 pgaB outer membrane N 60.6 34 0.00074 41.8 9.0 127 51-195 312-467 (671)
102 PLN02361 alpha-amylase 60.0 21 0.00045 40.9 6.8 57 71-127 32-96 (401)
103 TIGR03849 arch_ComA phosphosul 59.8 19 0.00041 38.4 5.9 53 67-129 70-122 (237)
104 PRK09989 hypothetical protein; 59.6 88 0.0019 33.0 11.1 43 69-125 16-58 (258)
105 PRK12677 xylose isomerase; Pro 59.6 90 0.002 35.6 11.8 91 67-175 30-124 (384)
106 cd04908 ACT_Bt0572_1 N-termina 59.1 29 0.00063 28.7 5.9 55 67-125 12-66 (66)
107 PRK14510 putative bifunctional 58.6 15 0.00033 47.7 6.0 56 72-127 191-267 (1221)
108 cd06592 GH31_glucosidase_KIAA1 57.7 75 0.0016 34.8 10.4 69 63-134 25-97 (303)
109 PRK14511 maltooligosyl trehalo 56.6 25 0.00055 44.0 7.1 60 66-129 18-91 (879)
110 PRK14507 putative bifunctional 56.0 24 0.00052 47.2 7.1 61 66-129 756-829 (1693)
111 COG3623 SgaU Putative L-xylulo 54.2 62 0.0014 34.6 8.4 97 67-192 17-115 (287)
112 PF08531 Bac_rhamnosid_N: Alph 53.1 34 0.00073 34.3 6.3 61 502-588 6-68 (172)
113 TIGR02100 glgX_debranch glycog 52.2 23 0.00051 43.3 5.9 55 73-127 189-265 (688)
114 PRK03705 glycogen debranching 50.2 27 0.00058 42.6 5.9 55 73-127 184-262 (658)
115 cd06589 GH31 The enzymes of gl 49.8 2.4E+02 0.0052 30.1 12.5 65 66-131 22-90 (265)
116 PLN00196 alpha-amylase; Provis 49.5 41 0.00088 38.9 7.0 57 71-127 47-112 (428)
117 TIGR00677 fadh2_euk methylenet 49.0 56 0.0012 35.6 7.6 108 54-175 130-250 (281)
118 COG5309 Exo-beta-1,3-glucanase 48.3 2.7E+02 0.0058 30.6 12.1 118 66-233 61-180 (305)
119 cd06565 GH20_GcnA-like Glycosy 48.3 1.1E+02 0.0023 33.6 9.7 59 66-127 15-80 (301)
120 PF02065 Melibiase: Melibiase; 47.8 94 0.002 35.6 9.4 89 61-149 51-148 (394)
121 TIGR03234 OH-pyruv-isom hydrox 46.3 36 0.00078 35.6 5.5 43 69-125 15-57 (254)
122 TIGR02102 pullulan_Gpos pullul 44.4 39 0.00084 43.6 6.3 21 107-127 555-575 (1111)
123 PF08531 Bac_rhamnosid_N: Alph 43.2 25 0.00055 35.2 3.6 23 676-698 7-29 (172)
124 PF14587 Glyco_hydr_30_2: O-Gl 42.7 1.6E+02 0.0034 33.8 10.0 121 96-231 93-226 (384)
125 PF12876 Cellulase-like: Sugar 42.6 35 0.00076 30.2 4.0 48 182-229 6-62 (88)
126 cd06591 GH31_xylosidase_XylS X 42.3 42 0.0009 37.0 5.4 66 66-132 22-91 (319)
127 smart00481 POLIIIAc DNA polyme 41.9 72 0.0016 26.4 5.6 45 69-126 16-60 (67)
128 cd06562 GH20_HexA_HexB-like Be 41.6 2.2E+02 0.0047 31.9 11.0 62 65-126 15-89 (348)
129 TIGR02455 TreS_stutzeri trehal 41.0 75 0.0016 38.7 7.5 76 66-145 76-176 (688)
130 TIGR00419 tim triosephosphate 40.9 56 0.0012 34.1 5.8 45 73-127 73-117 (205)
131 cd00311 TIM Triosephosphate is 40.6 60 0.0013 34.7 6.1 50 73-128 76-125 (242)
132 TIGR02103 pullul_strch alpha-1 40.6 47 0.001 41.9 6.1 21 107-127 404-424 (898)
133 PF02055 Glyco_hydro_30: O-Gly 40.6 1.7E+02 0.0038 34.5 10.4 274 51-351 74-424 (496)
134 PLN02877 alpha-amylase/limit d 40.2 54 0.0012 41.7 6.4 21 107-127 466-486 (970)
135 PRK00042 tpiA triosephosphate 39.4 57 0.0012 35.0 5.7 50 73-128 78-127 (250)
136 PF06832 BiPBP_C: Penicillin-B 39.3 58 0.0013 28.8 4.9 20 503-522 35-54 (89)
137 cd06595 GH31_xylosidase_XylS-l 39.0 96 0.0021 33.7 7.6 66 66-131 23-98 (292)
138 KOG3833 Uncharacterized conser 38.6 33 0.00072 38.0 3.8 53 69-127 444-499 (505)
139 cd06602 GH31_MGAM_SI_GAA This 38.4 54 0.0012 36.6 5.6 73 60-133 13-92 (339)
140 KOG0259 Tyrosine aminotransfer 37.4 36 0.00077 38.8 3.9 89 34-126 148-238 (447)
141 PRK14566 triosephosphate isome 37.2 98 0.0021 33.5 7.1 75 48-128 62-136 (260)
142 cd06598 GH31_transferase_CtsZ 37.2 59 0.0013 35.8 5.6 67 66-132 22-95 (317)
143 cd06545 GH18_3CO4_chitinase Th 37.1 1.5E+02 0.0033 31.3 8.5 96 98-222 36-132 (253)
144 PRK12858 tagatose 1,6-diphosph 36.9 48 0.001 37.2 4.9 65 60-127 99-163 (340)
145 PTZ00372 endonuclease 4-like p 36.5 72 0.0016 36.8 6.3 136 27-194 132-275 (413)
146 PRK09856 fructoselysine 3-epim 36.4 49 0.0011 34.9 4.7 55 69-127 91-149 (275)
147 PLN02784 alpha-amylase 36.1 82 0.0018 39.6 7.0 57 71-127 524-588 (894)
148 COG0366 AmyA Glycosidases [Car 35.0 52 0.0011 37.7 5.0 56 72-127 33-97 (505)
149 cd06416 GH25_Lys1-like Lys-1 i 34.9 86 0.0019 31.8 6.1 89 56-147 54-157 (196)
150 cd06599 GH31_glycosidase_Aec37 34.7 82 0.0018 34.7 6.2 66 67-132 28-98 (317)
151 cd06564 GH20_DspB_LnbB-like Gl 34.6 1.4E+02 0.0031 32.9 8.2 59 66-127 15-102 (326)
152 cd06603 GH31_GANC_GANAB_alpha 34.6 64 0.0014 35.9 5.4 68 66-134 22-91 (339)
153 PRK09267 flavodoxin FldA; Vali 33.7 3.3E+02 0.0071 26.7 9.8 74 48-124 44-117 (169)
154 PRK05265 pyridoxine 5'-phospha 33.5 61 0.0013 34.6 4.7 48 68-133 113-161 (239)
155 COG1874 LacA Beta-galactosidas 33.5 34 0.00073 41.8 3.1 53 675-754 540-592 (673)
156 cd02742 GH20_hexosaminidase Be 33.3 83 0.0018 34.4 6.0 60 65-127 13-92 (303)
157 COG1306 Uncharacterized conser 33.3 84 0.0018 34.8 5.7 59 66-127 75-144 (400)
158 PRK09875 putative hydrolase; P 33.2 2.3E+02 0.0049 31.2 9.2 63 67-146 33-95 (292)
159 cd06600 GH31_MGAM-like This fa 33.1 71 0.0015 35.2 5.4 71 61-132 14-89 (317)
160 PRK08645 bifunctional homocyst 32.2 1.4E+02 0.003 36.2 8.1 108 51-175 461-578 (612)
161 TIGR00433 bioB biotin syntheta 32.1 72 0.0016 34.2 5.2 51 71-125 123-176 (296)
162 PRK15492 triosephosphate isome 32.0 98 0.0021 33.5 6.1 50 73-128 86-135 (260)
163 PF11324 DUF3126: Protein of u 31.6 1.2E+02 0.0027 25.9 5.3 15 508-522 25-39 (63)
164 cd06601 GH31_lyase_GLase GLase 31.4 2.2E+02 0.0049 31.8 9.0 72 60-132 13-89 (332)
165 PF14701 hDGE_amylase: glucano 31.1 1.6E+02 0.0035 34.2 7.9 96 61-162 13-127 (423)
166 PLN03059 beta-galactosidase; P 31.0 1.6E+02 0.0034 37.1 8.2 41 657-698 469-517 (840)
167 PF08308 PEGA: PEGA domain; I 31.0 52 0.0011 27.6 3.1 20 503-522 3-22 (71)
168 COG1523 PulA Type II secretory 30.8 78 0.0017 38.9 5.6 55 73-127 205-285 (697)
169 PF01261 AP_endonuc_2: Xylose 30.6 55 0.0012 32.3 3.7 63 67-130 70-135 (213)
170 TIGR01361 DAHP_synth_Bsub phos 30.1 1.4E+02 0.0031 32.1 7.0 82 37-127 12-96 (260)
171 cd00003 PNPsynthase Pyridoxine 29.9 69 0.0015 34.1 4.4 49 68-134 110-159 (234)
172 PF07691 PA14: PA14 domain; I 29.6 2.9E+02 0.0063 25.8 8.4 35 480-522 47-81 (145)
173 PF07755 DUF1611: Protein of u 29.6 36 0.00077 37.6 2.3 61 52-127 34-95 (301)
174 PRK14567 triosephosphate isome 29.5 1.1E+02 0.0025 32.9 6.1 50 73-128 77-126 (253)
175 PRK13210 putative L-xylulose 5 29.4 82 0.0018 33.3 5.0 59 68-127 94-153 (284)
176 COG2876 AroA 3-deoxy-D-arabino 29.1 1.8E+02 0.0039 31.8 7.3 58 66-127 57-116 (286)
177 cd06597 GH31_transferase_CtsY 28.9 1.1E+02 0.0024 34.1 6.1 73 60-132 13-110 (340)
178 PF02228 Gag_p19: Major core p 28.8 26 0.00057 31.0 0.9 38 66-120 20-57 (92)
179 cd01299 Met_dep_hydrolase_A Me 28.7 1.2E+02 0.0026 33.0 6.3 59 66-127 118-180 (342)
180 PLN02561 triosephosphate isome 28.6 1.2E+02 0.0026 32.7 6.0 50 73-128 80-129 (253)
181 PF10566 Glyco_hydro_97: Glyco 28.4 1.5E+02 0.0032 32.5 6.7 114 66-187 30-159 (273)
182 PF01055 Glyco_hydro_31: Glyco 28.3 1.1E+02 0.0023 35.2 6.0 68 66-134 41-110 (441)
183 PRK09997 hydroxypyruvate isome 28.1 83 0.0018 33.1 4.8 60 68-127 85-144 (258)
184 cd00544 CobU Adenosylcobinamid 28.0 3.8E+02 0.0082 26.8 9.2 48 163-218 101-148 (169)
185 cd06547 GH85_ENGase Endo-beta- 27.8 1.2E+02 0.0025 34.1 6.0 104 84-221 32-138 (339)
186 COG5520 O-Glycosyl hydrolase [ 27.7 4.4E+02 0.0096 30.1 10.1 85 116-221 111-205 (433)
187 PRK14565 triosephosphate isome 27.7 1.2E+02 0.0026 32.4 5.8 50 73-128 77-126 (237)
188 PRK12595 bifunctional 3-deoxy- 27.5 3E+02 0.0064 31.2 9.2 81 38-127 106-189 (360)
189 cd06604 GH31_glucosidase_II_Ma 27.4 1E+02 0.0023 34.2 5.6 72 60-132 13-89 (339)
190 cd06418 GH25_BacA-like BacA is 27.1 3.7E+02 0.0081 28.1 9.2 90 65-176 49-139 (212)
191 PLN02429 triosephosphate isome 27.1 1.2E+02 0.0026 33.8 5.8 50 73-128 139-188 (315)
192 COG1735 Php Predicted metal-de 27.0 2.6E+02 0.0056 31.2 8.2 122 71-232 51-173 (316)
193 TIGR01698 PUNP purine nucleoti 26.8 88 0.0019 33.4 4.6 40 47-86 47-87 (237)
194 KOG0470 1,4-alpha-glucan branc 26.7 65 0.0014 39.5 3.9 57 71-127 258-331 (757)
195 PRK12331 oxaloacetate decarbox 26.5 1.4E+02 0.0031 34.7 6.6 56 60-127 88-143 (448)
196 cd06563 GH20_chitobiase-like T 26.1 2.6E+02 0.0057 31.3 8.5 60 65-127 15-106 (357)
197 PTZ00333 triosephosphate isome 26.0 1.4E+02 0.0031 32.1 6.1 50 73-128 81-130 (255)
198 TIGR03234 OH-pyruv-isom hydrox 25.9 91 0.002 32.6 4.6 60 68-127 84-143 (254)
199 COG1891 Uncharacterized protei 25.2 27 0.00058 35.7 0.3 68 53-126 116-186 (235)
200 KOG0622 Ornithine decarboxylas 24.8 1.2E+02 0.0026 35.0 5.3 67 65-141 190-257 (448)
201 PRK13396 3-deoxy-7-phosphohept 24.8 4.2E+02 0.0091 30.1 9.6 82 39-127 85-172 (352)
202 TIGR00559 pdxJ pyridoxine 5'-p 24.7 98 0.0021 33.1 4.4 49 68-134 110-159 (237)
203 TIGR00676 fadh2 5,10-methylene 24.6 2.9E+02 0.0063 29.7 8.2 106 53-175 125-246 (272)
204 PF00728 Glyco_hydro_20: Glyco 24.5 1E+02 0.0022 33.9 4.8 58 66-126 16-92 (351)
205 cd04882 ACT_Bt0572_2 C-termina 24.3 1.3E+02 0.0028 24.0 4.3 55 67-123 10-64 (65)
206 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.9 1.9E+02 0.004 31.3 6.6 50 65-126 88-137 (275)
207 PLN02231 alanine transaminase 23.6 2.5E+02 0.0053 33.5 8.0 60 63-126 251-310 (534)
208 PF04914 DltD_C: DltD C-termin 23.5 68 0.0015 31.1 2.8 59 107-190 36-95 (130)
209 PLN02389 biotin synthase 23.3 1.1E+02 0.0025 34.7 5.0 47 70-124 177-230 (379)
210 PRK09432 metF 5,10-methylenete 23.3 2E+02 0.0043 31.6 6.7 87 73-175 168-265 (296)
211 TIGR00587 nfo apurinic endonuc 23.2 6.3E+02 0.014 27.0 10.4 84 70-175 13-98 (274)
212 COG0149 TpiA Triosephosphate i 22.9 1.7E+02 0.0038 31.5 5.9 72 50-128 58-129 (251)
213 PF00121 TIM: Triosephosphate 22.6 62 0.0013 34.6 2.5 52 71-128 74-125 (244)
214 COG2179 Predicted hydrolase of 22.0 1.7E+02 0.0037 29.9 5.2 45 73-126 19-68 (175)
215 COG3684 LacD Tagatose-1,6-bisp 21.8 92 0.002 33.8 3.5 61 64-127 107-167 (306)
216 KOG4039 Serine/threonine kinas 21.7 1.5E+02 0.0032 30.8 4.8 79 62-146 103-184 (238)
217 TIGR03551 F420_cofH 7,8-dideme 21.5 81 0.0018 35.1 3.3 49 71-123 141-195 (343)
218 PRK10966 exonuclease subunit S 21.0 7.6E+02 0.016 28.4 11.0 85 52-149 41-135 (407)
219 PRK06703 flavodoxin; Provision 20.9 5E+02 0.011 24.9 8.3 103 48-175 46-148 (151)
220 PLN02450 1-aminocyclopropane-1 20.9 2.4E+02 0.0051 32.8 7.0 59 64-126 172-230 (468)
221 PF08821 CGGC: CGGC domain; I 20.7 2.5E+02 0.0053 26.4 5.8 60 58-126 42-105 (107)
222 cd07944 DRE_TIM_HOA_like 4-hyd 20.5 1.9E+02 0.0041 31.2 5.7 66 63-128 15-81 (266)
223 PLN03036 glutamine synthetase; 20.4 2.6E+02 0.0056 32.6 7.1 64 70-139 232-307 (432)
224 TIGR00542 hxl6Piso_put hexulos 20.3 1.6E+02 0.0034 31.4 5.1 55 69-127 95-153 (279)
225 PRK07094 biotin synthase; Prov 20.1 92 0.002 34.1 3.3 50 71-123 129-181 (323)
226 PF08306 Glyco_hydro_98M: Glyc 20.0 86 0.0019 34.9 3.0 60 54-124 104-170 (324)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.5e-187 Score=1617.58 Aligned_cols=705 Identities=82% Similarity=1.430 Sum_probs=655.3
Q ss_pred ccccceeEEEccCcEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHH
Q 004219 32 ISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (767)
Q Consensus 32 ~~~~~~~v~~d~~~~~ldGkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~ 111 (767)
+.+...+|++|+++|+|||+|++|+||+|||||+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|++||++
T Consensus 23 ~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~ 102 (840)
T PLN03059 23 VSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVK 102 (840)
T ss_pred hccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHH
Confidence 56667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004219 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (767)
Q Consensus 112 fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 191 (767)
||++|+|+||+|||||||||||||++||+|.||+++|+|++||+|++|+++|++|+++|+++++++++++++||||||+|
T Consensus 103 Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 103 FIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred HHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cccccCCcccCCCcchHHHHHHHHHHHHhcCCCcceEEecCCCCCCccccCCCCccccccCCCCCCCCcccccccccccc
Q 004219 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFT 271 (767)
Q Consensus 192 IENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vp~~~~~~~~~~~~v~~~~ng~~~~~~~~~~p~~P~~~tE~~~GWf~ 271 (767)
||||||++...++.+|++||+||+++++++|++|||+||++.++++++++||||.+|+.|.+..+.+|+|+||||+|||+
T Consensus 183 IENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~ 262 (840)
T PLN03059 183 IENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYT 262 (840)
T ss_pred ecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHh
Confidence 99999998766777899999999999999999999999999878888999999999999988777799999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCC-CcccccCCCCCCCcCCCCCchhHHHHHHHHHHH
Q 004219 272 EFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG-FVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAI 350 (767)
Q Consensus 272 ~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~-~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~i 350 (767)
+||+++++|+++|++.+++++|++|+|++||||||||||||||+|+ +++|||||||||+|+|++|+|||.+||++|+++
T Consensus 263 ~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~ 342 (840)
T PLN03059 263 EFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAI 342 (840)
T ss_pred hcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHH
Confidence 9999999999999999999999999998899999999999999998 599999999999999999667999999999999
Q ss_pred HhhcCCCCCCCCccccCCCccceEEeccCCcccchhhcccCCcceeeEeecCccccCCCCceeecCCccccccccceecc
Q 004219 351 KLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGV 430 (767)
Q Consensus 351 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~fl~N~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~~~~~t~~v~~ 430 (767)
+.++++++..+|....+|..+++.+|.... .|++|+.|++.+.+++|.|++.+|.||+|||||||||+.++|||+++.+
T Consensus 343 ~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~ 421 (840)
T PLN03059 343 KLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGA 421 (840)
T ss_pred HhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeecccccc
Confidence 988888888888787899999999998766 7999999999888999999999999999999999999999999999999
Q ss_pred ccccceeeccccccccccccccccCCCCCCCccccchhhhhcccCCCcceEEEEEEecCCCCcccccCCCCCceEecCcc
Q 004219 431 QSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAG 510 (767)
Q Consensus 431 ~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~~gyllYrt~i~~~~~~~~~~~g~~~~L~i~~~~ 510 (767)
|++.+..++....+.|++++|++...-...+++.++++||+++|+|.+||+||||+|..+.++..++++..++|+|.+.+
T Consensus 422 q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~ 501 (840)
T PLN03059 422 QSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAG 501 (840)
T ss_pred ccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccC
Confidence 98877666665667999999984443333578899999999999999999999999987666544566777899999999
Q ss_pred cEEEEEECCEEeCcccchhhHHHhhccccccccccccccccceeeeccCCCCceEEeeeeecCCCccEEEEEEeccCccc
Q 004219 511 HALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPN 590 (767)
Q Consensus 511 d~a~vfvng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~N 590 (767)
|++||||||+++ |+++++.....++++.+++++.|.|+|+||||||||+|
T Consensus 502 d~~~vFVNg~~~------------------------------Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~N 551 (840)
T PLN03059 502 HALHVFINGQLA------------------------------GTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPN 551 (840)
T ss_pred cEEEEEECCEEE------------------------------EEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCc
Confidence 999999999999 99998877788999888889999999999999999999
Q ss_pred ccccccccccceeccEEEccccCcceecccCceEEEecCccccccccccCCCCCccccccCccCCCCCceEEEEEEECCC
Q 004219 591 VGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPP 670 (767)
Q Consensus 591 yG~~~~~~~kGI~g~V~l~g~~~~~~~Lt~~~W~y~~gl~ge~~~~~~~~~~~~~~w~~~~~~~~~~~~~~Yk~~F~lp~ 670 (767)
||++|+++.|||+|+|+|+|.+.+..+|++|.|.|+++|.||.++++.+++..++.|.+.+..+..++++|||++|++|+
T Consensus 552 yG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~ 631 (840)
T PLN03059 552 VGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPG 631 (840)
T ss_pred cCcccccccccccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCC
Confidence 99999999999999999999888888999999999999999999999876556788976554444567999999999999
Q ss_pred CCCCeEEEeCCcceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceeeeecCcccccCCCcEEEEE
Q 004219 671 GNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVF 750 (767)
Q Consensus 671 ~~dp~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~PqqtlYhVP~~~Lk~g~N~ivvf 750 (767)
+.||+||||++||||+|||||+||||||+.....++|+.|+|+|.|+++||+|+||+|||||||||++|||+|+|+||||
T Consensus 632 g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViF 711 (840)
T PLN03059 632 GNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVF 711 (840)
T ss_pred CCCCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEE
Confidence 99999999999999999999999999998532346789999999999999999999999999999999999999999999
Q ss_pred EecCCCCccEEEEEeeC
Q 004219 751 EEWGGEPHWISLLKRTT 767 (767)
Q Consensus 751 E~~g~~~~~i~l~~~~~ 767 (767)
||+|++|..|+|+++++
T Consensus 712 Ee~gg~p~~I~~~~~~~ 728 (840)
T PLN03059 712 EEWGGNPAGISLVKRTT 728 (840)
T ss_pred EecCCCCCceEEEEeec
Confidence 99999999999999863
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-149 Score=1253.43 Aligned_cols=619 Identities=61% Similarity=1.106 Sum_probs=570.2
Q ss_pred ceeEEEccCcEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHH
Q 004219 36 KASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKL 115 (767)
Q Consensus 36 ~~~v~~d~~~~~ldGkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~l 115 (767)
.+.|++|+++|++||+|++++||++||+|++|++|+|+|+|+|++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 004219 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (767)
Q Consensus 116 a~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENE 195 (767)
|++.||+|+||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|+++++ +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCcccCCCcchHHHHHHHHHHHHhcCCCcceEEecCCCCCCccccCCCCccc-cccC-CCCCCCCcccccccccccccc
Q 004219 196 FGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-EKFV-PNQNYKPKMWTEAWTGWFTEF 273 (767)
Q Consensus 196 yg~~~~~~~~~~~~y~~~L~~~~~~~g~~vp~~~~~~~~~~~~v~~~~ng~~~-~~~~-~~~p~~P~~~tE~~~GWf~~W 273 (767)
||.+...+.+.+++|++|-+.++...+.++||++|.+.++|++++++||+++| +.|. +++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887667778899999999999999999999999999999999999999999 8887 899999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCCCcCCCCCchhHHHHHHHHHHHHhh
Q 004219 274 GSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLC 353 (767)
Q Consensus 274 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~i~~~ 353 (767)
|++++.|++++++..+++++++|+|++||||||||||||++||.+.+|||||||||+ |..++|||.++|.+|..++.+
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cCCCCCCCCccccCCCccceEEeccCCcccchhhcccCCcceeeEeecCccccCCCCceeecCCccccccccceeccccc
Q 004219 354 EPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSS 433 (767)
Q Consensus 354 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~fl~N~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~~~~~t~~v~~~~~ 433 (767)
++.+..+++....+|+.. ..|.+|+.|++......+.+.+..+.+|+++++|+|||++++|+|+++..+
T Consensus 333 ep~lv~gd~~~~kyg~~~---------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGNLR---------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred CccccccCcccccccchh---------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 998887776665665543 359999999998888899999999999999999999999999999987432
Q ss_pred cceeeccccccccccccccccCCCCCCCccccchhhhhcccCCCcceEEEEEEecCCCCcccccCCCCCceEec-CcccE
Q 004219 434 QKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIW-SAGHA 512 (767)
Q Consensus 434 ~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~~gyllYrt~i~~~~~~~~~~~g~~~~L~i~-~~~d~ 512 (767)
|..+.|+++ +|..+ |.+||++|++.++.+..+ ...|+|. +.+|+
T Consensus 402 ------------~~~~~e~~~-------------~~~~~---~~~~~ll~~~~~t~d~sd-------~t~~~i~ls~g~~ 446 (649)
T KOG0496|consen 402 ------------WISFTEPIP-------------SEAVG---QSFGGLLEQTNLTKDKSD-------TTSLKIPLSLGHA 446 (649)
T ss_pred ------------cccccCCCc-------------ccccc---CcceEEEEEEeeccccCC-------CceEeecccccce
Confidence 445545443 34443 588899999998765443 1358888 99999
Q ss_pred EEEEECCEEeCcccchhhHHHhhccccccccccccccccceeeeccCCCCceEEeeeeecCCCccEEEEEEeccCccccc
Q 004219 513 LQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVG 592 (767)
Q Consensus 513 a~vfvng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG 592 (767)
+||||||+++ |+++++.....+.+..++.|..|.|+|+|||||+||+|||
T Consensus 447 ~hVfvNg~~~------------------------------G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G 496 (649)
T KOG0496|consen 447 LHVFVNGEFA------------------------------GSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG 496 (649)
T ss_pred EEEEECCEEe------------------------------eeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC
Confidence 9999999999 9999988788888888888999999999999999999999
Q ss_pred ccccccccceeccEEEccccCcceecccCceEEEecCccccccccccCCCCCccccccCccCCCCCceEEEEEEECCCCC
Q 004219 593 THFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGN 672 (767)
Q Consensus 593 ~~~~~~~kGI~g~V~l~g~~~~~~~Lt~~~W~y~~gl~ge~~~~~~~~~~~~~~w~~~~~~~~~~~~~~Yk~~F~lp~~~ 672 (767)
+++++.|||+|+|+|+|. ++++.++|.|+++|.+|....+++...++++|......+..+|.+||+ +|++|++.
T Consensus 497 -~~e~~~~Gi~g~v~l~g~----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~ 570 (649)
T KOG0496|consen 497 -HFENDFKGILGPVYLNGL----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGS 570 (649)
T ss_pred -cccccccccccceEEeee----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCC
Confidence 789999999999999987 577777899999999999999999988889998765544447889999 99999999
Q ss_pred CCeEEEeCCcceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceeeeecCcccccCCCcEEEEEEe
Q 004219 673 DPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEE 752 (767)
Q Consensus 673 dp~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~PqqtlYhVP~~~Lk~g~N~ivvfE~ 752 (767)
+|++|||.|||||+|||||+|||||||. .| ||+++ |||++|||+++|+||||||
T Consensus 571 ~~t~Ldm~g~GKG~vwVNG~niGRYW~~---~G----------------------~Q~~y-hvPr~~Lk~~~N~lvvfEe 624 (649)
T KOG0496|consen 571 EPTALDMNGWGKGQVWVNGQNIGRYWPS---FG----------------------PQRTY-HVPRSWLKPSGNLLVVFEE 624 (649)
T ss_pred CCeEEecCCCcceEEEECCcccccccCC---CC----------------------CceEE-ECcHHHhCcCCceEEEEEe
Confidence 9999999999999999999999999997 49 87666 5999999999999999999
Q ss_pred cCCCCccEEEEEee
Q 004219 753 WGGEPHWISLLKRT 766 (767)
Q Consensus 753 ~g~~~~~i~l~~~~ 766 (767)
+|++|..|+|+++.
T Consensus 625 e~~~p~~i~~~~~~ 638 (649)
T KOG0496|consen 625 EGGDPNGISFVTRP 638 (649)
T ss_pred ccCCCccceEEEeE
Confidence 99999999999875
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=2.8e-88 Score=732.06 Aligned_cols=296 Identities=43% Similarity=0.788 Sum_probs=229.7
Q ss_pred cEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 004219 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (767)
Q Consensus 45 ~~~ldGkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi 124 (767)
+|+|||||++|+|||+||+|+|+++|+|+|+||||+|||||++||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCcccCCC
Q 004219 125 LRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG 204 (767)
Q Consensus 125 lr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~ 204 (767)
|||||||||||++||+|.||.+++++++||+|+.|++++++|+++|+++++ ++|+++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999954
Q ss_pred cchHHHHHHHHHHHHhcCCC-cceEEecCCC--------CCCccccCCCCccc-cc-------cCCCCCCCCcccccccc
Q 004219 205 APGKAYAKWAAQMAVGLNTG-VPWVMCKQDD--------APDPVINTCNGFYC-EK-------FVPNQNYKPKMWTEAWT 267 (767)
Q Consensus 205 ~~~~~y~~~L~~~~~~~g~~-vp~~~~~~~~--------~~~~v~~~~ng~~~-~~-------~~~~~p~~P~~~tE~~~ 267 (767)
.++++||+.|++++++.+++ ++.++++... .++..+.++.++.| +. ..+.+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 46899999999999999988 5567776521 22222333344444 21 23557889999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCCCc-----ccccCCCCCCCcCCCCCchhHHH
Q 004219 268 GWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFV-----ATSYDYDAPIDEYGLLNEPKWGH 342 (767)
Q Consensus 268 GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~-----~TSYDYdApl~E~G~~~t~Ky~~ 342 (767)
|||++||++++.+++++++..++++++.|.+ +||||||||||||+++|+.. +|||||+|||+|+|++ ||||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 79999999999999999843 4999999999999999 599999
Q ss_pred HHHHHHH
Q 004219 343 LRDLHKA 349 (767)
Q Consensus 343 lr~l~~~ 349 (767)
+|+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-36 Score=345.26 Aligned_cols=288 Identities=22% Similarity=0.302 Sum_probs=216.0
Q ss_pred EEEccCcEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-ceeCCCCCCCCCceecccchhHHHHHHHHH
Q 004219 39 VSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (767)
Q Consensus 39 v~~d~~~~~ldGkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~-yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~ 117 (767)
|.+++..+.+||+|++++||++||+|+|++.|.|||++||++|+|+|++ |+.||.|||++|+|||+ .+|++ |+++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 77888 899999
Q ss_pred HcCcEEEeecCc-ccccccCCCCCCeeeccCCCeeec---------CCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 004219 118 QAGLYVHLRIGP-YVCAEWNYGGFPVWLKYVPGIEFR---------TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (767)
Q Consensus 118 ~~GL~Vilr~GP-yicaEw~~GGlP~WL~~~p~~~~R---------t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 187 (767)
+.||+||||||| ..|.+|..+++|+||..++....| .+++.|++++++.+ ++|+ ++.+++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~----~~ir--er~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRIL----QQIR--ERLYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHH----HHHH--HHHhccCCce
Confidence 999999999999 999999999999999876653333 34677888887744 4555 3336899999
Q ss_pred EEeccccccCCcccCCCcchHHHHHHHHHHHHhc-CCCcceEEec-CCCCC-CccccCCC-----Cccc--cccCCCCCC
Q 004219 188 ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMCK-QDDAP-DPVINTCN-----GFYC--EKFVPNQNY 257 (767)
Q Consensus 188 I~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~-g~~vp~~~~~-~~~~~-~~v~~~~n-----g~~~--~~~~~~~p~ 257 (767)
|+||++||||++.+.|..|...+..||++.+-.+ ..+.+|-+.- ..+.. -..+.+.+ .... -++......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999965556778899999999987422 2233432211 00000 00011111 0000 022222222
Q ss_pred C----Cccccccccccc-cccCCCCCCCC-hHHHHHHHHHHHHcCCeeeeeeeeccCCCCC------CCCCC--------
Q 004219 258 K----PKMWTEAWTGWF-TEFGSAVPTRP-AEDLVFSVARFIQSGGSFINYYMYHGGTNFG------RTSGG-------- 317 (767)
Q Consensus 258 ~----P~~~tE~~~GWf-~~WG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~-------- 317 (767)
+ +....|.+-+|| +.|..+.-... .+.-.+.+.+.|..... -||||+|+|++|+ +.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 556778888899 77776544333 33334556677777766 6999999999999 66665
Q ss_pred ---CcccccCCCCCCCcCCCC
Q 004219 318 ---FVATSYDYDAPIDEYGLL 335 (767)
Q Consensus 318 ---~~~TSYDYdApl~E~G~~ 335 (767)
...|++++++.+.+.|..
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 267999999999999994
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.85 E-value=5.7e-21 Score=211.57 Aligned_cols=263 Identities=21% Similarity=0.273 Sum_probs=159.7
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEE-ceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC
Q 004219 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG 138 (767)
Q Consensus 60 ~Hy~r~~~~~W~d~l~kmKa~G~N~V~~-yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~G 138 (767)
+++..+|++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .||++|++|+++||+|||++. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4556689999999999999999999996 67899999999999999 899999999999999999985 56
Q ss_pred CCCeeecc-CCCeee----------------cCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccc
Q 004219 139 GFPVWLKY-VPGIEF----------------RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW 201 (767)
Q Consensus 139 GlP~WL~~-~p~~~~----------------Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~ 201 (767)
..|.||.+ .|++.. ..++|.|++++++++++|++++++ ++.||+|||+||++....
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-------HPAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-------cceEEEEEeccccCcCcC
Confidence 78999975 466522 134688999999999999888764 457999999999986422
Q ss_pred CCCcchHHHHHHHHHHHHhc-------CC-------------CcceEEecCC------C---------------------
Q 004219 202 DIGAPGKAYAKWAAQMAVGL-------NT-------------GVPWVMCKQD------D--------------------- 234 (767)
Q Consensus 202 ~~~~~~~~y~~~L~~~~~~~-------g~-------------~vp~~~~~~~------~--------------------- 234 (767)
.+..+.++|.+||++++... |. ..|..+.... |
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23346778999999988531 11 1222111000 0
Q ss_pred --CCCccccCCC--C-----c----------------ccc-----------------cc-CCCCCCCCcccccccccccc
Q 004219 235 --APDPVINTCN--G-----F----------------YCE-----------------KF-VPNQNYKPKMWTEAWTGWFT 271 (767)
Q Consensus 235 --~~~~v~~~~n--g-----~----------------~~~-----------------~~-~~~~p~~P~~~tE~~~GWf~ 271 (767)
.|+ ..-+.| + . |.. ++ +...+.+|.+++|..+| -.
T Consensus 224 ~~~p~-~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPD-HPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCC-ceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 010 000000 0 0 000 00 01247799999999999 55
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCCCcCC-CCCchhHHHHHHHHHHH
Q 004219 272 EFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYG-LLNEPKWGHLRDLHKAI 350 (767)
Q Consensus 272 ~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDYdApl~E~G-~~~t~Ky~~lr~l~~~i 350 (767)
.|+.......+..+....-.-++.|+..+.|+=+ ..-.+|.=.. ..+-|+-+| .+ +++|.+++++.+.|
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~~-~~~~~e~~~~~~~l 371 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGREP-TRRYREVAQLGREL 371 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS--B--HHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCCC-CcHHHHHHHHHHHH
Confidence 6765555555666666666778999998877755 3333342211 136778889 66 79999999998877
Q ss_pred Hh
Q 004219 351 KL 352 (767)
Q Consensus 351 ~~ 352 (767)
+.
T Consensus 372 ~~ 373 (374)
T PF02449_consen 372 KK 373 (374)
T ss_dssp HT
T ss_pred hc
Confidence 63
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.47 E-value=1.7e-12 Score=139.64 Aligned_cols=192 Identities=20% Similarity=0.268 Sum_probs=123.8
Q ss_pred EEEccCcEEECCEEEEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHH
Q 004219 39 VSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRF 112 (767)
Q Consensus 39 v~~d~~~~~ldGkp~~l~sG~~Hy~r------~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~f 112 (767)
|++.++.|+|||||+.|.|...|... .+++.|+++|++||++|+|+||+ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 67889999999999999999999632 57889999999999999999999 555544 489
Q ss_pred HHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 004219 113 IKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (767)
Q Consensus 113 l~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QI 192 (767)
+++|.++||.|+..+.=.-++.|..-|.. .....|+.+.+.+.+-+++++.+.+ |+++||+|-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~-------NHPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDR-------NHPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHT-------T-TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCc-------CcCchheeec
Confidence 99999999999987621112233221111 2345788888877776666665544 6679999999
Q ss_pred ccccCCcccCCCcchHHHHHHHHHHHHhcCCCcceEEecCC-C-CCCcc-ccCCCCccc-----cccC----C--CCCCC
Q 004219 193 ENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD-D-APDPV-INTCNGFYC-----EKFV----P--NQNYK 258 (767)
Q Consensus 193 ENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vp~~~~~~~-~-~~~~v-~~~~ng~~~-----~~~~----~--~~p~~ 258 (767)
.||-. ...+++.|.+++++.+.+.|+...... . ..+.. .+...+.+. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99992 457889999999999999987554431 1 11111 111111111 1111 1 35789
Q ss_pred Ccccccccccccc
Q 004219 259 PKMWTEAWTGWFT 271 (767)
Q Consensus 259 P~~~tE~~~GWf~ 271 (767)
|++.+||-...+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999655443
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.36 E-value=9.5e-11 Score=138.06 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=111.4
Q ss_pred eeEEEccCcEEECCEEEEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHH
Q 004219 37 ASVSYDHKAVIINGQKRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (767)
Q Consensus 37 ~~v~~d~~~~~ldGkp~~l~sG~~Hy~------r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~ 110 (767)
.+|++++..|+|||+|+++.|...|.. .++++.|+++++.||++|+|+||+ .|-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----------H
Confidence 447889999999999999999998853 257788999999999999999999 455543 3
Q ss_pred HHHHHHHHcCcEEEeecCcccccccCCCCCCeeec-------c-CCCeeecCCChhHHHHHHHHHHHHHHHHHhcccccc
Q 004219 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK-------Y-VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQT 182 (767)
Q Consensus 111 ~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~-------~-~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~ 182 (767)
+|+++|.|+||+|+.... ++ |+..|.. + .+....-..+|.+.++..+- +.++|++ +.
T Consensus 340 ~~~~~cD~~GllV~~E~p--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~mv~r----~~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--AV------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQA---IRELIAR----DK 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc--cc------cccccccccccccccccccccccccchhHHHHHHHH---HHHHHHh----cc
Confidence 899999999999998863 11 1111211 0 11111112345555544433 4444542 36
Q ss_pred CCCceEEeccccccCCcccCCCcchHHHHHHHHHHHHhcCCCcceEEe
Q 004219 183 QGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMC 230 (767)
Q Consensus 183 ~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vp~~~~ 230 (767)
|+++||||-+.||.... ......+++.|.+.+++.+.+.|+..+
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 88999999999997532 123457888899999999988887554
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.23 E-value=1.2e-10 Score=144.00 Aligned_cols=185 Identities=22% Similarity=0.252 Sum_probs=121.9
Q ss_pred eEEEccCcEEECCEEEEEEEEEeeCC-----C-CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHH
Q 004219 38 SVSYDHKAVIINGQKRILISGSIHYP-----R-STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (767)
Q Consensus 38 ~v~~d~~~~~ldGkp~~l~sG~~Hy~-----r-~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~ 111 (767)
+|+++++.|+|||+|+++.|...|.. | ++++.|+++|+.||++|+|+||+ .|-|.. .+
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~~-----------~~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPND-----------PR 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------HH
Confidence 36778889999999999999998842 1 47889999999999999999999 354433 38
Q ss_pred HHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004219 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (767)
Q Consensus 112 fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 191 (767)
|+++|.|+||+|+-.. |..|..|...+ +...-+++|.+.++ +.+++.+++++ .+|+++||||-
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~---~~~~~~~mV~R----drNHPSIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKV---YVDRIVRHIHA----QKNHPSIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHH---HHHHHHHHHHh----CCCCCEEEEEE
Confidence 9999999999999886 33332221101 00012356666543 34445555553 37889999999
Q ss_pred cccccCCcccCCCcchHHHHHHHHHHHHhcCCCcceEEecCCCCCCccccCCCCccc-----cccCCCCCCCCccccccc
Q 004219 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-----EKFVPNQNYKPKMWTEAW 266 (767)
Q Consensus 192 IENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vp~~~~~~~~~~~~v~~~~ng~~~-----~~~~~~~p~~P~~~tE~~ 266 (767)
+.||-+. +. .++.+.+.+++++.+.|+.. .+... ..+.+...-.|. +.+....+++|++.+|+-
T Consensus 446 lGNE~~~--------g~-~~~~~~~~~k~~DptR~v~~-~~~~~-~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 446 LGNESGY--------GC-NIRAMYHAAKALDDTRLVHY-EEDRD-AEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred CccCccc--------cH-HHHHHHHHHHHhCCCceEEe-CCCcC-ccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 9999762 12 23667788888888887643 22111 111222222222 233344467999999983
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.17 E-value=5e-10 Score=138.55 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=107.0
Q ss_pred eEEEccCcEEECCEEEEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHH
Q 004219 38 SVSYDHKAVIINGQKRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (767)
Q Consensus 38 ~v~~d~~~~~ldGkp~~l~sG~~Hy~------r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~ 111 (767)
+|++++..|+|||+|+++.|...|.. +++++.++++|+.||++|+|+||+ .++.+.| +
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------L 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 36778889999999999999999842 368899999999999999999999 3444445 8
Q ss_pred HHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004219 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (767)
Q Consensus 112 fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 191 (767)
|+++|.|+||+|+-...=..|+-+ |.. . -.+||.|.+++ .+++.+++++ .+|+++||||-
T Consensus 399 fydlcDe~GilV~dE~~~e~hg~~-----~~~---~-----~~~dp~~~~~~---~~~~~~mV~R----drNHPSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEANIETHGMV-----PMN---R-----LSDDPRWLPAM---SERVTRMVQR----DRNHPSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecCccccCCc-----ccc---C-----CCCCHHHHHHH---HHHHHHHHHh----CCCCCEEEEEe
Confidence 999999999999988631112211 110 0 13567776554 4455555653 36889999999
Q ss_pred cccccCCcccCCCcchHHHHHHHHHHHHhcCCCcceEEe
Q 004219 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMC 230 (767)
Q Consensus 192 IENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vp~~~~ 230 (767)
+.||-+. + ...+.+.+.+++.+.+.|+...
T Consensus 459 lgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 459 LGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred CccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 9999763 1 1245667777888888887554
No 10
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.96 E-value=9.7e-10 Score=102.36 Aligned_cols=73 Identities=36% Similarity=0.725 Sum_probs=52.6
Q ss_pred CCCceEEEEEEECCCCCCCeE-EEe--CCcceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceee
Q 004219 656 KQPMTWYKTTFNVPPGNDPLA-LDM--GAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRW 732 (767)
Q Consensus 656 ~~~~~~Yk~~F~lp~~~dp~~-Ld~--~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~Pqqtl 732 (767)
..+..|||++|..-.....+. |+. +...+++|||||++|||||+. +| ||+++
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~---~g----------------------~q~tf 87 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG---IG----------------------PQTTF 87 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT---TE----------------------CCEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC---CC----------------------ccEEE
Confidence 347899999996422111223 333 467899999999999999975 68 99999
Q ss_pred eecCcccccCCCcEEEEE-EecC
Q 004219 733 YHVPRSWLKPSGNLLVVF-EEWG 754 (767)
Q Consensus 733 YhVP~~~Lk~g~N~ivvf-E~~g 754 (767)
+ ||+++|+.++|.|+|+ +..|
T Consensus 88 ~-~p~~il~~~n~v~~vl~~~~g 109 (111)
T PF13364_consen 88 S-VPAGILKYGNNVLVVLWDNMG 109 (111)
T ss_dssp E-E-BTTBTTCEEEEEEEEE-ST
T ss_pred E-eCceeecCCCEEEEEEEeCCC
Confidence 7 9999999986666554 4443
No 11
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=1.1e-08 Score=123.13 Aligned_cols=120 Identities=20% Similarity=0.303 Sum_probs=94.5
Q ss_pred eeEEEccCcEEECCEEEEEEEEEeeCCC-----C-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHH
Q 004219 37 ASVSYDHKAVIINGQKRILISGSIHYPR-----S-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (767)
Q Consensus 37 ~~v~~d~~~~~ldGkp~~l~sG~~Hy~r-----~-~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~ 110 (767)
.+|+++...|.|||||+++-|..-|.+- . ..+.-+++|+.||++|+|+|||- |-|+. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------H
Confidence 4588898999999999999999999633 3 34448999999999999999992 77765 5
Q ss_pred HHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 004219 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (767)
Q Consensus 111 ~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 190 (767)
+|+++|.++||+||-.+ ..||- |+| +|+.|++.+..=+++++++. +|+++||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~--~~~-------------~~~~~~k~~~~~i~~mver~-------knHPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETH--GMP-------------DDPEWRKEVSEEVRRMVERD-------RNHPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhc--CCC-------------CCcchhHHHHHHHHHHHHhc-------cCCCcEEEE
Confidence 89999999999999987 33442 222 67778877765555555444 577899999
Q ss_pred ccccccCC
Q 004219 191 QIENEFGP 198 (767)
Q Consensus 191 QIENEyg~ 198 (767)
-+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999874
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.90 E-value=2.3e-08 Score=105.10 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=107.9
Q ss_pred CCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCC-CCCCc-eecccchhHHHHHHHHHHcCcEEEee
Q 004219 49 NGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-PTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 49 dGkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hE-p~~G~-ydf~g~~dL~~fl~la~~~GL~Vilr 126 (767)
+|+++.+.+-+.|... +..-++.++.||++|+|+||+.|.|...+ |.|+. ++=+....|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6999999999999321 22778999999999999999999995554 77764 77677789999999999999999987
Q ss_pred cCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCcccC--CC
Q 004219 127 IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWD--IG 204 (767)
Q Consensus 127 ~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~--~~ 204 (767)
+= + .|.|...... -...+...++..++++.|+.+++ +..+|++++|=||....... ..
T Consensus 82 ~h----~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Cccccccccc---cccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCccccc
Confidence 62 1 1666332111 01222233444445555555554 44579999999999764221 00
Q ss_pred ----cchHHHHHHHHHHHHhcCCCcceEEe
Q 004219 205 ----APGKAYAKWAAQMAVGLNTGVPWVMC 230 (767)
Q Consensus 205 ----~~~~~y~~~L~~~~~~~g~~vp~~~~ 230 (767)
..-.++.+.+.+.+|+.+.+.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 01134556666777888888766543
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.44 E-value=6.3e-07 Score=83.57 Aligned_cols=84 Identities=23% Similarity=0.302 Sum_probs=56.7
Q ss_pred hhhhcccCCCcceEEEEEEecCCCCcccccCCCCCc-eEec-CcccEEEEEECCEEeCcccchhhHHHhhcccccccccc
Q 004219 468 WEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPL-LTIW-SAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLT 545 (767)
Q Consensus 468 ~Eql~~t~d~~gyllYrt~i~~~~~~~~~~~g~~~~-L~i~-~~~d~a~vfvng~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (767)
.+..+.+++++|++|||++|..++.+. ... |.+. +.+++++|||||+++
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~----------------------- 74 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFL----------------------- 74 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEE-----------------------
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEe-----------------------
Confidence 455566678999999999997543321 123 4444 578999999999999
Q ss_pred ccccccceeeeccCCCCceEEeeeee-cCCCccEEEEEEeccCc
Q 004219 546 FSFYPYAGTVYGSLENPKLTFSKNVK-LRPGVNKISLLSTSVGL 588 (767)
Q Consensus 546 ~~~~~~~G~~~~~~~~~~~~~~~~~~-l~~g~~~L~ILven~Gr 588 (767)
|..... .....+|++|.. |+.+.|+|.+|+++||+
T Consensus 75 -------G~~~~~-~g~q~tf~~p~~il~~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 75 -------GSYWPG-IGPQTTFSVPAGILKYGNNVLVVLWDNMGH 110 (111)
T ss_dssp -------EEEETT-TECCEEEEE-BTTBTTCEEEEEEEEE-STT
T ss_pred -------eeecCC-CCccEEEEeCceeecCCCEEEEEEEeCCCC
Confidence 665422 122245655542 56677899999999996
No 14
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.08 E-value=3.7e-05 Score=83.17 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=85.3
Q ss_pred ccceeEEEccCcEE--ECCEEEEEEEEEeeCCC-----------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCc
Q 004219 34 FVKASVSYDHKAVI--INGQKRILISGSIHYPR-----------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN 100 (767)
Q Consensus 34 ~~~~~v~~d~~~~~--ldGkp~~l~sG~~Hy~r-----------~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ 100 (767)
+.-..|++.++.|. .+|++|+|.+-.+.+.. ..++.|++++..||++|+||||+| ...|..
T Consensus 6 ~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY----~vdp~~-- 79 (314)
T PF03198_consen 6 AAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVY----SVDPSK-- 79 (314)
T ss_dssp TTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS--
T ss_pred ccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEE----EeCCCC--
Confidence 34455888898888 78999999998877522 246789999999999999999996 234444
Q ss_pred eecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCCh--hHHHHHHHHHHHHHHHHHhcc
Q 004219 101 YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNG--PFKAAMHKFTEKIVSMMKAEK 178 (767)
Q Consensus 101 ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~--~y~~~~~~~~~~l~~~l~~~~ 178 (767)
|=++++++.++.|||||+..+. |...+-..+| .|-...-.-+.++++..+.+
T Consensus 80 -------nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y- 133 (314)
T PF03198_consen 80 -------NHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY- 133 (314)
T ss_dssp ---------HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT--
T ss_pred -------CHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC-
Confidence 7789999999999999998742 1222333344 44322222233445556633
Q ss_pred ccccCCCceEEeccccccCCccc--CCCcchHHHHHHHHHHHHhcCC-Ccce
Q 004219 179 LFQTQGGPIILSQIENEFGPVEW--DIGAPGKAYAKWAAQMAVGLNT-GVPW 227 (767)
Q Consensus 179 ~~~~~gGpII~~QIENEyg~~~~--~~~~~~~~y~~~L~~~~~~~g~-~vp~ 227 (767)
.+++++-+.||.-.-.. .-.++-++..+-+|+-.++.+. .+|+
T Consensus 134 ------~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 ------DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ------CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 47999999999853211 0112334555555555555554 4565
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.96 E-value=2.1e-05 Score=83.36 Aligned_cols=117 Identities=19% Similarity=0.309 Sum_probs=86.6
Q ss_pred CCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHH
Q 004219 91 WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKI 170 (767)
Q Consensus 91 Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l 170 (767)
|...||++|+|||+ .++++++.|+++||.| |..+- -|-. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l---~W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTL---VWHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEE---eecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 33222 2433 6899987433 345677888888888
Q ss_pred HHHHHhccccccCCCceEEeccccccCCccc------C-CCcchHHHHHHHHHHHHhcCCCcceEEecC
Q 004219 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEW------D-IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQ 232 (767)
Q Consensus 171 ~~~l~~~~~~~~~gGpII~~QIENEyg~~~~------~-~~~~~~~y~~~L~~~~~~~g~~vp~~~~~~ 232 (767)
+.+++ |.|..|+|=||--+... . +...+.+|+...-+.+++.+.++.++.++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 88766 56899999999532210 0 112345788888888888888888887653
No 16
>TIGR03356 BGL beta-galactosidase.
Probab=97.80 E-value=5.1e-05 Score=86.41 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=79.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~ 146 (767)
..|+++|+.||++|+|++|+-|.|+..+|. +|++|.+|....+++|+.|.++||.+|+-.=. | .+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H-----f---d~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH-----W---DLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc-----C---CccHHHHh
Confidence 458999999999999999999999999999 79999999999999999999999998866421 2 58999986
Q ss_pred CCCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
..+- .++...++..+|.+.++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhC
Confidence 5443 346666777777777777766
No 17
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.74 E-value=0.00015 Score=71.19 Aligned_cols=99 Identities=25% Similarity=0.367 Sum_probs=66.5
Q ss_pred CCCcceEEEEEEecCCCCcccccCCCCCceEecCcccEEEEEECCEEeCcccchhhHHHhhcccccccccccccccccee
Q 004219 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGT 554 (767)
Q Consensus 475 ~d~~gyllYrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 554 (767)
....|+.|||++|.++... .+....|.+.++.+.+.|||||+++ |.
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~v------------------------------g~ 109 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLV------------------------------GS 109 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEE------------------------------EE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEE------------------------------ee
Confidence 4578999999999876532 1334568888999999999999999 55
Q ss_pred eeccCCCCceEEeeeeecCCCc-cEEEEEEeccCcccccccc-cccccceeccEEEc
Q 004219 555 VYGSLENPKLTFSKNVKLRPGV-NKISLLSTSVGLPNVGTHF-EKWNAGVLGPVTLK 609 (767)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~g~-~~L~ILven~Gr~NyG~~~-~~~~kGI~g~V~l~ 609 (767)
..+. ...+.+++.-.|+.|. |+|.|.|.+.....+-+.. .....||.++|.|.
T Consensus 110 ~~~~--~~~~~~dIt~~l~~g~~N~l~V~v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 110 HEGG--YTPFEFDITDYLKPGEENTLAVRVDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EEST--TS-EEEECGGGSSSEEEEEEEEEEESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eCCC--cCCeEEeChhhccCCCCEEEEEEEeecCCCceeecCcCCccCccccEEEEE
Confidence 3321 2235555555578887 9999999965543321111 13468999998873
No 18
>PLN02705 beta-amylase
Probab=97.69 E-value=0.00011 Score=84.65 Aligned_cols=113 Identities=16% Similarity=0.247 Sum_probs=82.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEE--EeecCcccccccCCCC---
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGG--- 139 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dL~~fl~la~~~GL~V--ilr~GPyicaEw~~GG--- 139 (767)
.++.-+..|+++|++|+..|.+-|.|...|. .|++|||+| ..+++++++++||++ ||.+ --||. +.|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG--NVGD~~ 338 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG--NASGNV 338 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC--CCCCcc
Confidence 4566788999999999999999999999998 799999995 667899999999996 4554 44555 333
Q ss_pred ---CCeeecc----CCCeeec------------------------CCChhHHHHHHHHHHHHHHHHHhccccccCCCceE
Q 004219 140 ---FPVWLKY----VPGIEFR------------------------TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (767)
Q Consensus 140 ---lP~WL~~----~p~~~~R------------------------t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII 188 (767)
||.|+.+ +|+|.+. |--..|.+.++.|=....+.+ .+|-|.
T Consensus 339 ~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl--------~~g~I~ 410 (681)
T PLN02705 339 MISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLF--------VEGLIT 410 (681)
T ss_pred cccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhc--------cCCcee
Confidence 8999985 5776431 111345555555555444333 236788
Q ss_pred Eeccc
Q 004219 189 LSQIE 193 (767)
Q Consensus 189 ~~QIE 193 (767)
-+||.
T Consensus 411 eI~VG 415 (681)
T PLN02705 411 AVEIG 415 (681)
T ss_pred EEEec
Confidence 88883
No 19
>PLN02801 beta-amylase
Probab=97.66 E-value=0.00014 Score=82.58 Aligned_cols=80 Identities=25% Similarity=0.476 Sum_probs=64.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEE--eecCcccccccCCC----
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG---- 138 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dL~~fl~la~~~GL~Vi--lr~GPyicaEw~~G---- 138 (767)
.++.-+..|+++|++|+..|.+-|-|...|. .|++|||+| ..+++++++++||++. +.+ .-||- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5666899999999999999999999999998 699999995 6688999999999964 554 44554 112
Q ss_pred -CCCeeecc----CCCee
Q 004219 139 -GFPVWLKY----VPGIE 151 (767)
Q Consensus 139 -GlP~WL~~----~p~~~ 151 (767)
-||.|+.+ +|++.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999985 57763
No 20
>PLN02905 beta-amylase
Probab=97.65 E-value=0.00015 Score=83.81 Aligned_cols=113 Identities=20% Similarity=0.394 Sum_probs=81.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEE--eecCcccccccCCC-----
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG----- 138 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dL~~fl~la~~~GL~Vi--lr~GPyicaEw~~G----- 138 (767)
++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..+++++++++||++. +.+ .-||- +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~I 358 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCI 358 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 445688999999999999999999999998 899999995 6688999999999964 554 44554 112
Q ss_pred CCCeeecc----CCCeee------------------------cCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 004219 139 GFPVWLKY----VPGIEF------------------------RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (767)
Q Consensus 139 GlP~WL~~----~p~~~~------------------------Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 190 (767)
-||.|+.+ +|+|.+ ||--..|.+.++.|=....+.+. +|.|.-+
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI 430 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMV 430 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEE
Confidence 28999985 577643 11123466666665555544432 3678888
Q ss_pred ccc
Q 004219 191 QIE 193 (767)
Q Consensus 191 QIE 193 (767)
||.
T Consensus 431 ~VG 433 (702)
T PLN02905 431 EVG 433 (702)
T ss_pred Eec
Confidence 883
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.63 E-value=0.00017 Score=82.57 Aligned_cols=81 Identities=22% Similarity=0.482 Sum_probs=65.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEE--eecCcccccccCCC----
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG---- 138 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dL~~fl~la~~~GL~Vi--lr~GPyicaEw~~G---- 138 (767)
.++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..+++++++++||++. +.+ .-||- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566899999999999999999999999998 899999995 5678999999999964 554 44554 112
Q ss_pred -CCCeeecc----CCCeee
Q 004219 139 -GFPVWLKY----VPGIEF 152 (767)
Q Consensus 139 -GlP~WL~~----~p~~~~ 152 (767)
-||.|+.+ +|++.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 28999985 577643
No 22
>PLN02803 beta-amylase
Probab=97.59 E-value=0.00021 Score=81.62 Aligned_cols=83 Identities=18% Similarity=0.441 Sum_probs=64.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----C
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~G-----G 139 (767)
.++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..+++++++++||++..-..=.-||- +-| -
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 180 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIP 180 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 3455688999999999999999999999998 599999995 66889999999999643322244554 112 2
Q ss_pred CCeeecc----CCCeee
Q 004219 140 FPVWLKY----VPGIEF 152 (767)
Q Consensus 140 lP~WL~~----~p~~~~ 152 (767)
||.|+.+ +|+|.+
T Consensus 181 LP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVY 197 (548)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999985 577743
No 23
>PLN02161 beta-amylase
Probab=97.57 E-value=0.00025 Score=80.63 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=64.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----C
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~G-----G 139 (767)
.++.-+..|+++|++|+..|.+-|-|...|. .|++|||+| ..+++++++++||++..-..=.-|+- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 3445688999999999999999999999998 899999995 66889999999999643322244443 112 2
Q ss_pred CCeeecc----CCCeee
Q 004219 140 FPVWLKY----VPGIEF 152 (767)
Q Consensus 140 lP~WL~~----~p~~~~ 152 (767)
||.|+.+ +|+|.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 8999985 577743
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.54 E-value=0.00034 Score=75.80 Aligned_cols=225 Identities=20% Similarity=0.263 Sum_probs=111.4
Q ss_pred cCcEE-ECCEEEEEEEEEeeC---CCCCcccHHHHHHHHHHCCCCEEEEcee--CCCC-C-------C----CCCceecc
Q 004219 43 HKAVI-INGQKRILISGSIHY---PRSTPEMWPDLIQKAKDGGLDVIQTYVF--WNGH-E-------P----TQGNYYFQ 104 (767)
Q Consensus 43 ~~~~~-ldGkp~~l~sG~~Hy---~r~~~~~W~d~l~kmKa~G~N~V~~yv~--Wn~h-E-------p----~~G~ydf~ 104 (767)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+.|||+|++-|+ |... . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45566 7999999998 4444 3567899999999999999999999766 3322 1 1 12236776
Q ss_pred cc-----hhHHHHHHHHHHcCcEEEee---cCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHh
Q 004219 105 DR-----YDLVRFIKLVQQAGLYVHLR---IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (767)
Q Consensus 105 g~-----~dL~~fl~la~~~GL~Vilr---~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 176 (767)
.- ..|++.|+.|.+.||.+.|- -+||.-+-|-.| | ..| =.+..++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 58999999999999997543 235544555433 1 111 136788999999999985
Q ss_pred ccccccCCCceEEeccccccCCcccCCCcchHHHHHHHHHHHHhcCCCcce-EEecCC-CCC-----CccccC--C-CCc
Q 004219 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPW-VMCKQD-DAP-----DPVINT--C-NGF 246 (767)
Q Consensus 177 ~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vp~-~~~~~~-~~~-----~~v~~~--~-ng~ 246 (767)
.+ +|| |=|-||+ .. .....++.+.+.+.+++.+..-+. ++..+. ..+ .+-++. . .|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~~----~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-FD----TEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-CC----CCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 42 355 7799999 11 234667777788887776554332 332221 010 010111 1 111
Q ss_pred cc------c----ccC-CCCCCCCcccccc-ccccccccCCCCCCCChHHHHHHHHHHHHcCC
Q 004219 247 YC------E----KFV-PNQNYKPKMWTEA-WTGWFTEFGSAVPTRPAEDLVFSVARFIQSGG 297 (767)
Q Consensus 247 ~~------~----~~~-~~~p~~P~~~tE~-~~GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~ 297 (767)
.. + ... ...|.+|++..|- |.|--..+.+.....+++++...+=+-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 00 0 111 4568999999995 45543322222334567777655444455565
No 25
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.13 E-value=0.0015 Score=72.13 Aligned_cols=109 Identities=26% Similarity=0.404 Sum_probs=66.4
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCC-CceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCC
Q 004219 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPG 149 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~yv~Wn~hEp~~-G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~ 149 (767)
+|.++.||+.|+|+||.=| |+ .|.. |..|.+ +..+..+-|+++||.|+|.+- | ..-|...|- -..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-Y-SD~WaDPg~----Q~~P~ 94 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-Y-SDFWADPGK----QNKPA 94 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--S-SSS--BTTB-----B--T
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-c-cCCCCCCCC----CCCCc
Confidence 6899999999999999977 54 4555 666666 666777777889999999863 1 223322220 00111
Q ss_pred eeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccC
Q 004219 150 IEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 197 (767)
Q Consensus 150 ~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg 197 (767)
--.--+-....+++..|...++..|++ +|=.+=||||.||..
T Consensus 95 aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 95 AWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEIN 136 (332)
T ss_dssp TCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGG
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccc
Confidence 100113355678999999999999984 566788999999963
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.05 E-value=0.00068 Score=75.87 Aligned_cols=114 Identities=17% Similarity=0.274 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccc----cCCCCCCee
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE----WNYGGFPVW 143 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaE----w~~GGlP~W 143 (767)
.-+..|+++|++|+..|.+.|-|...|.. |++|||+| .+++.+++++.||++.+-..=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45789999999999999999999999997 99999994 67889999999999754322233432 111138999
Q ss_pred ecc---CCCeeec--C------------CChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 004219 144 LKY---VPGIEFR--T------------DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (767)
Q Consensus 144 L~~---~p~~~~R--t------------~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QI 192 (767)
+.+ ..+|... + .... ++.-+.|++......+ ++. +.|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 1254221 0 0112 4444555555555555 332 67888887
No 27
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0029 Score=68.66 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=97.5
Q ss_pred HHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCC
Q 004219 77 AKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDN 156 (767)
Q Consensus 77 mKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d 156 (767)
.|+.+.=|-+.=.=|+..||++|.|+|+ --|+..+.|+++||.+ |-=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 3343333334445599999999999999 6789999999999965 322222 433 6899997643 245
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccC----Cccc---CCCcchHHHHHHHHHHHHhcCCCcceEE
Q 004219 157 GPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG----PVEW---DIGAPGKAYAKWAAQMAVGLNTGVPWVM 229 (767)
Q Consensus 157 ~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg----~~~~---~~~~~~~~y~~~L~~~~~~~g~~vp~~~ 229 (767)
+..++.+++++..++.+.+ |.|+.|-|=||-= ++.. ..+..+.+|+++.-+.+++.+.+.-++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 6788999999999999887 4599999999962 2211 1124567899999999999888888888
Q ss_pred ecC
Q 004219 230 CKQ 232 (767)
Q Consensus 230 ~~~ 232 (767)
++.
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 776
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.82 E-value=0.0012 Score=75.89 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~ 145 (767)
..|+++|+.||++|+|+.|+-|.|...+|. +|++|-+|....+++|+.+.++||..|+-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 358999999999999999999999999999 699999999999999999999999976553 1236899998
Q ss_pred cCCCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 146 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
+.-+- .++...+...+|.+.+++++.
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~g 155 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFG 155 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhC
Confidence 64332 346667777777777777776
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.70 E-value=0.024 Score=56.71 Aligned_cols=137 Identities=15% Similarity=0.256 Sum_probs=83.4
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCC-----CC---CCceecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 004219 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (767)
Q Consensus 63 ~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hE-----p~---~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaE 134 (767)
-.+.++.|+++++.||++|+++|=+- |...+ |. ++.|.-.....|+.+|++|++.||+|++..+ ..
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--FD-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--CC--
Confidence 46899999999999999999998421 22221 11 2233334456899999999999999998763 22
Q ss_pred cCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCcccCCCcchHHHHHHH
Q 004219 135 WNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 214 (767)
Q Consensus 135 w~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L 214 (767)
|.|-.+ .|+... ..+-+.++..|. . .++++.+.=+|=|-.|...... ...++.+.|
T Consensus 89 ------~~~w~~--------~~~~~~---~~~~~~v~~el~--~-~yg~h~sf~GWYip~E~~~~~~----~~~~~~~~l 144 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDWE---AERNKQVADELW--Q-RYGHHPSFYGWYIPYEIDDYNW----NAPERFALL 144 (166)
T ss_pred ------chhhhc--------cCHHHH---HHHHHHHHHHHH--H-HHcCCCCCceEEEecccCCccc----chHHHHHHH
Confidence 222221 222221 111223444454 2 2566778888988888875532 245566666
Q ss_pred HHHHHhcCCCcceEE
Q 004219 215 AQMAVGLNTGVPWVM 229 (767)
Q Consensus 215 ~~~~~~~g~~vp~~~ 229 (767)
.+.+++.--+.|+..
T Consensus 145 ~~~lk~~s~~~Pv~I 159 (166)
T PF14488_consen 145 GKYLKQISPGKPVMI 159 (166)
T ss_pred HHHHHHhCCCCCeEE
Confidence 666665544556543
No 30
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.70 E-value=0.0017 Score=71.33 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=107.5
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEc--eeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccc
Q 004219 55 LISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (767)
Q Consensus 55 l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~y--v~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyic 132 (767)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||.+|+|||+ ..+++++.|+++||.|--.+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688888877665432 3444555669999875 5699999999999999 89999999999999975332 1
Q ss_pred cccCCCCCCeeeccCCCeeecCC-ChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccc---------C
Q 004219 133 AEWNYGGFPVWLKYVPGIEFRTD-NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW---------D 202 (767)
Q Consensus 133 aEw~~GGlP~WL~~~p~~~~Rt~-d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~---------~ 202 (767)
-|.. ..|.|+...+.. ... .+...+.++++++.++.++++ -|.|.+|-|=||-=.-.. -
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1433 789999875110 000 123788889999998887662 189999999999622110 0
Q ss_pred CCcchHHHHHHHHHHHHhcCCCcceEEecCC
Q 004219 203 IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD 233 (767)
Q Consensus 203 ~~~~~~~y~~~L~~~~~~~g~~vp~~~~~~~ 233 (767)
+...+.+|+...-+.+++...++.++.++..
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 1123456888888888888888889888764
No 31
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.0065 Score=68.99 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=71.4
Q ss_pred CcccH-----HHHHHHHHHCCCCEEEEceeCCCCCCC----CCceecccchhHHHHHHHHHHcCcEEEeec----Ccccc
Q 004219 66 TPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPT----QGNYYFQDRYDLVRFIKLVQQAGLYVHLRI----GPYVC 132 (767)
Q Consensus 66 ~~~~W-----~d~l~kmKa~G~N~V~~yv~Wn~hEp~----~G~ydf~g~~dL~~fl~la~~~GL~Vilr~----GPyic 132 (767)
....| ++.+..||.+|||+||.++.|..+++. |...+=+-...|++.|+.|++.||+|++-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45668 899999999999999999995444554 322212222389999999999999999883 22222
Q ss_pred cccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCC
Q 004219 133 AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 198 (767)
Q Consensus 133 aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~ 198 (767)
-| ..|.... . .......++..+-++.|+.+. ++.-.||++|+=||--.
T Consensus 146 ~~------~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f-------~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSD--Y---KEENENVEATIDIWKFIANRF-------KNYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccc--c---cccchhHHHHHHHHHHHHHhc-------cCCCceeeeeeecCCcc
Confidence 11 1222110 0 001222333334444444444 44678999999999863
No 32
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.52 E-value=0.0022 Score=74.19 Aligned_cols=95 Identities=12% Similarity=0.139 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~ 146 (767)
.|+++++.||++|+|+.|+-+.|...+|. ++++|-+|....+++|+.|.++||..++-.= -| .+|.||..
T Consensus 72 ry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~-----H~---~~P~~l~~ 143 (474)
T PRK09852 72 RYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC-----HF---DVPMHLVT 143 (474)
T ss_pred hhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-----CC---CCCHHHHH
Confidence 47999999999999999999999999997 5667888888999999999999999875541 13 58999875
Q ss_pred C-CCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 147 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
. -+- .++...++..+|.+.+++++.
T Consensus 144 ~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 144 EYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred hcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 3 232 344455555555555555554
No 33
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.51 E-value=0.004 Score=61.15 Aligned_cols=67 Identities=28% Similarity=0.567 Sum_probs=51.3
Q ss_pred CCCceEEEEEEECCCCC--CCeEEEeCCc-ceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceee
Q 004219 656 KQPMTWYKTTFNVPPGN--DPLALDMGAM-GKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRW 732 (767)
Q Consensus 656 ~~~~~~Yk~~F~lp~~~--dp~~Ld~~g~-gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~Pqqtl 732 (767)
..+..||+.+|++|... ..++|.+.+. ....|||||+.+|+....+ ..-+
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--------------------------~~~~- 118 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--------------------------TPFE- 118 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--------------------------S-EE-
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--------------------------CCeE-
Confidence 34679999999999743 4579999876 6999999999999987421 2333
Q ss_pred eecCcccccCCC-cEEEEE
Q 004219 733 YHVPRSWLKPSG-NLLVVF 750 (767)
Q Consensus 733 YhVP~~~Lk~g~-N~ivvf 750 (767)
+.|+. .|++|+ |+|.|.
T Consensus 119 ~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 119 FDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EECGG-GSSSEEEEEEEEE
T ss_pred EeChh-hccCCCCEEEEEE
Confidence 35865 799998 998873
No 34
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.43 E-value=0.009 Score=69.23 Aligned_cols=95 Identities=12% Similarity=0.141 Sum_probs=75.3
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~ 146 (767)
.|+++++.||++|+|+.|+-|.|+...|. +|++|-+|....+++|+.+.++||..++-.= -| .+|.||..
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-----H~---dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-----HF---EMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-----CC---CCCHHHHH
Confidence 58999999999999999999999999997 5678989999999999999999999776531 13 58999976
Q ss_pred C-CCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 147 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
. -+- .++...++..+|.+.++++++
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 4 332 345556666666666666665
No 35
>PLN02998 beta-glucosidase
Probab=96.41 E-value=0.0032 Score=73.16 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~ 147 (767)
.|+++++.||++|+|+-|+-|.|+..+|. .|.+|-+|..--+++|+.+.++||..++-.= -| -+|.||.+.
T Consensus 83 ry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~~ 154 (497)
T PLN02998 83 KYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALEDE 154 (497)
T ss_pred hhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHHh
Confidence 48999999999999999999999999996 6788999999999999999999998665431 24 479999764
Q ss_pred -CCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 148 -p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
-+-.=|..=..|.++++.-++++..+++
T Consensus 155 yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 155 YGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3321122223455555555555555554
No 36
>PLN02814 beta-glucosidase
Probab=96.30 E-value=0.0041 Score=72.42 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~ 147 (767)
.|+++++.||++|+|+-|+-|.|+..+|. +|.+|-+|..--+++|+.|.++||..++-.= -|+ +|.||.+.
T Consensus 78 ry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~d---lP~~L~~~ 149 (504)
T PLN02814 78 KYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HYD---LPQSLEDE 149 (504)
T ss_pred hhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHHh
Confidence 48999999999999999999999999996 6889999999999999999999998665431 343 79999864
Q ss_pred -CCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 148 -p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
-+-.=|..-..|.++++.-++++..+++
T Consensus 150 yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 150 YGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred cCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 3321122223344555444544444444
No 37
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.19 E-value=0.015 Score=67.24 Aligned_cols=96 Identities=11% Similarity=0.098 Sum_probs=74.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~ 146 (767)
..|+++++.||++|+|+-|+-|.|+..+|. +|.+|=+|..--+++|+.+.++||..++-.= -| -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHH
Confidence 348999999999999999999999999996 6788888999999999999999999776541 24 48999986
Q ss_pred CCCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
.-+- .++...++..+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5332 344445555555555555544
No 38
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.14 E-value=0.0065 Score=70.40 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~ 145 (767)
..|+++++.||++|+|+-|+-|.|+..+|. +|++|=+|..--+++|+.+.++||..++-.= -| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHH
Confidence 458999999999999999999999999997 6678889999999999999999998664430 24 4899997
Q ss_pred cC-CCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 146 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
+. -+-.=|..=..|.++++.-++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 3331122223455555555555555554
No 39
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.06 E-value=0.0066 Score=70.29 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~ 145 (767)
..|+++++.||++|+|+-|+-|.|+..+|. +|.+|=+|...-+++|+.+.++||.-++-.= -| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 348999999999999999999999999997 5678888999999999999999998665431 24 4899997
Q ss_pred cC-CCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 146 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
++ -+-.=|..-..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 54 3331122223455555555555555554
No 40
>PLN02849 beta-glucosidase
Probab=96.06 E-value=0.0064 Score=70.83 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~ 147 (767)
.|+++++.||++|+|+-|+-|.|...+|. .|.+|=+|...-+++|+.+.++||.-++-.= -| -+|.||.+.
T Consensus 80 rY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 151 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLEDD 151 (503)
T ss_pred hHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHHh
Confidence 48999999999999999999999999996 3788889999999999999999999665431 24 489999764
Q ss_pred -CCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 148 -p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
-+-.=|..-..|.++++.-++++..+++
T Consensus 152 yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 152 YGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred cCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3321122223455555555555555554
No 41
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.034 Score=59.87 Aligned_cols=116 Identities=24% Similarity=0.331 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHH---cCcEEEeecCcccccccCCCCCCeeec
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ---AGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~---~GL~Vilr~GPyicaEw~~GGlP~WL~ 145 (767)
.=+|.|+-+|+.|+|.||.- .|+..--..|.=-=.|+.|+.+.+++|++ .||+|++.+= | ..=|.- |+--
T Consensus 64 ~~qD~~~iLK~~GvNyvRlR-vwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y-SDfwaD---PakQ- 136 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLR-VWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y-SDFWAD---PAKQ- 136 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEE-EecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c-hhhccC---hhhc-
Confidence 34789999999999999984 47765444444444577899999998865 6999999862 1 111110 1100
Q ss_pred cCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccC
Q 004219 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 197 (767)
Q Consensus 146 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg 197 (767)
++|.-..--+-....+++-.|.+..+..+++ +|=-+=||||.||-.
T Consensus 137 ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~------eGi~pdmVQVGNEtn 182 (403)
T COG3867 137 KKPKAWENLNFEQLKKAVYSYTKYVLTTMKK------EGILPDMVQVGNETN 182 (403)
T ss_pred CCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH------cCCCccceEeccccC
Confidence 1121111123345567888899999888873 455667999999973
No 42
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.01 E-value=0.021 Score=66.18 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~ 147 (767)
.++++++.||++|+|+-|+-|.|+..+|. .|.+|-+|...-+++|+.+.++||.-++-.= -| .+|.||.+.
T Consensus 55 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 126 (469)
T PRK13511 55 RYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHSN 126 (469)
T ss_pred hhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHHc
Confidence 47999999999999999999999999996 5788999999999999999999998665431 23 489999864
Q ss_pred CCeeecCCChhHHHHHHHHHHHHHHHH
Q 004219 148 PGIEFRTDNGPFKAAMHKFTEKIVSMM 174 (767)
Q Consensus 148 p~~~~Rt~d~~y~~~~~~~~~~l~~~l 174 (767)
-+- .++...++..+|.+.+++++
T Consensus 127 GGW----~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 127 GDW----LNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHh
Confidence 332 34444444444444444444
No 43
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.27 Score=57.01 Aligned_cols=150 Identities=17% Similarity=0.255 Sum_probs=99.3
Q ss_pred cCcEEECCEEEEEEEEEeeC-----CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHH
Q 004219 43 HKAVIINGQKRILISGSIHY-----PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (767)
Q Consensus 43 ~~~~~ldGkp~~l~sG~~Hy-----~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~ 117 (767)
+..|.+||.|+++.++.--+ -|..-+.-+-.|+-++++|+|++|+ |. -|.| .=+.|.++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GGvY------Esd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GGVY------ESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Cccc------cchhHHHHhh
Confidence 36799999999999887654 2234445566799999999999999 43 2444 4469999999
Q ss_pred HcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc--
Q 004219 118 QAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE-- 195 (767)
Q Consensus 118 ~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENE-- 195 (767)
+.||.|--.. =+.||-. ..|..|+.-++.=.+.-+.+|+ .+.+||.+.=.||
T Consensus 393 ~lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls-------~HpSviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLS-------HHPSVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhc-------cCCeEEEEeCCCccH
Confidence 9999885322 1346553 2567888888776666666665 4568998887666
Q ss_pred -------cCCcccCCCcchH----HHHHHHHHHHHhcCCCcceEEecC
Q 004219 196 -------FGPVEWDIGAPGK----AYAKWAAQMAVGLNTGVPWVMCKQ 232 (767)
Q Consensus 196 -------yg~~~~~~~~~~~----~y~~~L~~~~~~~g~~vp~~~~~~ 232 (767)
||..-.+-.-.-+ -|.+-++++.....-..|+++...
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 3321100000112 244557777777777899887654
No 44
>PRK10150 beta-D-glucuronidase; Provisional
Probab=94.72 E-value=0.13 Score=61.21 Aligned_cols=99 Identities=23% Similarity=0.233 Sum_probs=64.3
Q ss_pred CCcceEEEEEEecCCCCcccccCCCCCceEecCcccEEEEEECCEEeCcccchhhHHHhhccccccccccccccccceee
Q 004219 476 DASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTV 555 (767)
Q Consensus 476 d~~gyllYrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 555 (767)
+..|..|||++|.++... .+....|.+.++...+.|||||+++ |..
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~v------------------------------g~~ 107 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEV------------------------------MEH 107 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEe------------------------------eeE
Confidence 356889999999875421 2344678899999999999999999 442
Q ss_pred eccCCCCceEEeeeeecCCCc-cEEEEEEeccCccc---ccc---------------cccccccceeccEEEccc
Q 004219 556 YGSLENPKLTFSKNVKLRPGV-NKISLLSTSVGLPN---VGT---------------HFEKWNAGVLGPVTLKGL 611 (767)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~g~-~~L~ILven~Gr~N---yG~---------------~~~~~~kGI~g~V~l~g~ 611 (767)
.+. ...+.|++.-.|+.|. |+|.|.|.|.-+.. .|. .. -...||..+|.|.-.
T Consensus 108 ~~~--~~~f~~DIT~~l~~G~~n~L~V~v~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~-~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 108 KGG--YTPFEADITPYVYAGKSVRITVCVNNELNWQTLPPGNVIEDGNGKKKQKYNFDF-FNYAGIHRPVMLYTT 179 (604)
T ss_pred cCC--ccceEEeCchhccCCCceEEEEEEecCCCcccCCCCccccCCcccccccccccc-ccccCCCceEEEEEc
Confidence 221 2234555443466675 49999998742110 110 01 135899999998544
No 45
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.66 E-value=0.21 Score=48.30 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=64.2
Q ss_pred HHHHHHHHCCCCEEEEcee----C-----CCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCe
Q 004219 72 DLIQKAKDGGLDVIQTYVF----W-----NGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (767)
Q Consensus 72 d~l~kmKa~G~N~V~~yv~----W-----n~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~ 142 (767)
+-++.+|++|+|+|.++.= | ..|.+.|+- .. .-|.++++.|++.||.|+.|...- -.|+-.---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~---Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KR---DLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-Cc---CHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4577899999999998432 2 335555544 12 266899999999999999998654 33444445799
Q ss_pred eeccCCCee-------------ecCCChhHHHHHHHHHHHHHHH
Q 004219 143 WLKYVPGIE-------------FRTDNGPFKAAMHKFTEKIVSM 173 (767)
Q Consensus 143 WL~~~p~~~-------------~Rt~d~~y~~~~~~~~~~l~~~ 173 (767)
|+..+++-+ .-+.+.+|++.+.+-+++++..
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 998654322 1123557887766666666543
No 46
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.49 E-value=0.046 Score=62.59 Aligned_cols=95 Identities=17% Similarity=0.303 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCc--eecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN--YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~--ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~ 146 (767)
.++++++.||+||+|+.|+-|.|+..-|..+. .+=.|..-.+++++.|.++||.-++-.= -|+ +|.||.+
T Consensus 60 rYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~~ 131 (460)
T COG2723 60 RYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQK 131 (460)
T ss_pred hhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHhh
Confidence 47899999999999999999999999997654 8888999999999999999999765541 343 7999987
Q ss_pred C-CCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 147 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
. -+= .+..-.++..+|.+.+++++.
T Consensus 132 ~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 132 PYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred ccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 5 233 223333444445555554444
No 47
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.30 E-value=0.17 Score=63.96 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=64.2
Q ss_pred cceEEEEEEecCCCCcccccCCCCCceEecCcccEEEEEECCEEeCcccchhhHHHhhccccccccccccccccceeeec
Q 004219 478 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYG 557 (767)
Q Consensus 478 ~gyllYrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 557 (767)
.+--|||++|.++..- .+....|.+.++...+.|||||+++|.+. |
T Consensus 108 n~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~--------------------------g---- 153 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSK--------------------------G---- 153 (1021)
T ss_pred CCeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEecccc--------------------------C----
Confidence 3567999999875431 23446788999999999999999994332 1
Q ss_pred cCCCCceEEeeeeecCCCccEEEEEEeccCccccccccc-ccccceeccEEEcccc
Q 004219 558 SLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFE-KWNAGVLGPVTLKGLN 612 (767)
Q Consensus 558 ~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~-~~~kGI~g~V~l~g~~ 612 (767)
....+.|++.-.|+.|.|+|.|.|.+...-.|-...+ -...||..+|.|--.+
T Consensus 154 --~~~pfefDIT~~l~~G~N~LaV~V~~~~d~s~le~qd~w~~sGI~R~V~L~~~p 207 (1021)
T PRK10340 154 --SRLTAEFDISAMVKTGDNLLCVRVMQWADSTYLEDQDMWWLAGIFRDVYLVGKP 207 (1021)
T ss_pred --CCccEEEEcchhhCCCccEEEEEEEecCCCCccccCCccccccccceEEEEEeC
Confidence 1223455544446788899999997543222211100 1247999999985543
No 48
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.37 E-value=0.47 Score=60.15 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=61.9
Q ss_pred cceEEEEEEecCCCCcccccCCC-CCceEecCcccEEEEEECCEEeCcccchhhHHHhhccccccccccccccccceeee
Q 004219 478 SDYLWYMTDVNIDSNEGFLKNGQ-DPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVY 556 (767)
Q Consensus 478 ~gyllYrt~i~~~~~~~~~~~g~-~~~L~i~~~~d~a~vfvng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 556 (767)
.+-.|||++|.++.+ +. +. ...|...++...+.|||||+++ |...
T Consensus 119 n~~gwYrr~F~vp~~--w~--~~~rv~L~FeGV~~~a~VwvNG~~V------------------------------G~~~ 164 (1027)
T PRK09525 119 NPTGCYSLTFTVDES--WL--QSGQTRIIFDGVNSAFHLWCNGRWV------------------------------GYSQ 164 (1027)
T ss_pred CCeEEEEEEEEeChh--hc--CCCeEEEEECeeccEEEEEECCEEE------------------------------Eeec
Confidence 467899999987542 11 11 3568888999999999999999 5422
Q ss_pred ccCCCCceEEeeeeecCCCccEEEEEEeccCcccccccccc----cccceeccEEEccc
Q 004219 557 GSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEK----WNAGVLGPVTLKGL 611 (767)
Q Consensus 557 ~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~----~~kGI~g~V~l~g~ 611 (767)
+ ....+.|++.-.|+.|.|+|.|.|..--.-+| ++. ...||..+|.|--.
T Consensus 165 g--~~~pfefDIT~~l~~G~N~L~V~V~~~sdgs~---~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 165 D--SRLPAEFDLSPFLRAGENRLAVMVLRWSDGSY---LEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred C--CCceEEEEChhhhcCCccEEEEEEEecCCCCc---cccCCceeeccccceEEEEEc
Confidence 2 12235565544477889999998853221122 221 23699999998544
No 49
>PRK09936 hypothetical protein; Provisional
Probab=92.20 E-value=3.3 Score=45.10 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=47.7
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc-hhHHHHHHHHHHcCcEEEeec
Q 004219 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR-YDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 63 ~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~-~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+++++.|++.++.+|+.||+|+= |=|... |.=||.+. .+|.+.++.|++.||.|++.-
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEcc
Confidence 468999999999999999999874 456544 11188764 599999999999999998753
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.64 E-value=2.6 Score=50.72 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=39.6
Q ss_pred HHH-HHHHHCCCCEEEE-ceeCCCCCCCCCce----------ecccchhHHHHHHHHHHcCcEEEeec
Q 004219 72 DLI-QKAKDGGLDVIQT-YVFWNGHEPTQGNY----------YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 72 d~l-~kmKa~G~N~V~~-yv~Wn~hEp~~G~y----------df~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
++| ..+|++|+|+|.. +|+..-.... --| .|.+..+|.+|++.|++.||.|||..
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 354 7779999999998 6765321110 012 34456799999999999999999884
No 51
>smart00642 Aamy Alpha-amylase domain.
Probab=90.60 E-value=0.7 Score=46.20 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCC-------CCCCce-----ecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHE-------PTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hE-------p~~G~y-----df~g~~dL~~fl~la~~~GL~Vilr~GPyicaE 134 (767)
.+.+.|..+|++|+|+|.+-=++...+ -.+..| .|....+++++++.|+++||.||+..=|-=++.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 356677779999999999753332222 112222 355668999999999999999998864433333
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=90.51 E-value=0.79 Score=50.43 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=69.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeC-------CCCCCC-------CCc-eecccchhHHHHHHHHHHcCcEEEeecCcc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFW-------NGHEPT-------QGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~W-------n~hEp~-------~G~-ydf~g~~dL~~fl~la~~~GL~Vilr~GPy 130 (767)
.++.-++.|++++++|||+|=.=|-+ +-.+|. +|. -.|+ -|..+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 56677899999999999999755443 222231 111 0144 79999999999999999776 11
Q ss_pred cccccCC----CCCCeeec-cCCCeeecC----CCh----hHHHHHHHHHHHHHHHHHhccccccCCCceEEecccc
Q 004219 131 VCAEWNY----GGFPVWLK-YVPGIEFRT----DNG----PFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 194 (767)
Q Consensus 131 icaEw~~----GGlP~WL~-~~p~~~~Rt----~d~----~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIEN 194 (767)
-...-.. -.-|.|+. +.|+..... .+. +-..+|++++..++..|.+ .+ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 1110011 12578876 455543322 111 1245777777777755442 22 366778763
No 53
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.58 E-value=5.8 Score=48.01 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHCCCCEEEE-cee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 74 IQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 74 l~kmKa~G~N~V~~-yv~-------Wn~h-----Ep~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
+.-+|++|+|+|+. .|. |... .|.+ .|....+|.+|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999996 231 3221 1111 23345799999999999999999874
No 54
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=89.00 E-value=0.31 Score=55.72 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=106.6
Q ss_pred cEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCC-CC---CCCceec-ccchhHHHHHHHHHHc
Q 004219 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EP---TQGNYYF-QDRYDLVRFIKLVQQA 119 (767)
Q Consensus 45 ~~~ldGkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~h-Ep---~~G~ydf-~g~~dL~~fl~la~~~ 119 (767)
.|.++++++..++..--++++..++-+++|+-|+.+|++++|.. -+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48888888888887777778877788899999999999999994 344 66 2332222 2345789999999999
Q ss_pred CcEEEeecCcccccccCCCCCC---eeec-cCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 004219 120 GLYVHLRIGPYVCAEWNYGGFP---VWLK-YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (767)
Q Consensus 120 GL~Vilr~GPyicaEw~~GGlP---~WL~-~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENE 195 (767)
+|+|+++. |.+==.+||.= .|.. +.|+..+ .|+.++..-++|.+.+++-. +....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~y-------k~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPY-------KLDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhh-------ccChHHHHHHhcCC
Confidence 99998774 33322355632 2331 2343222 25566666677777776533 45668999999999
Q ss_pred cCCcccCCCcchHHHHHHHHHHHH
Q 004219 196 FGPVEWDIGAPGKAYAKWAAQMAV 219 (767)
Q Consensus 196 yg~~~~~~~~~~~~y~~~L~~~~~ 219 (767)
.... -...+..+++|+++|+.
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 3321 12346789999999864
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=88.33 E-value=6.1 Score=48.53 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=36.9
Q ss_pred HHHHHHCCCCEEEE-ceeCC----CCCCCCCce-----ecccchhHHHHHHHHHHcCcEEEeec
Q 004219 74 IQKAKDGGLDVIQT-YVFWN----GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 74 l~kmKa~G~N~V~~-yv~Wn----~hEp~~G~y-----df~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
|.-+|++|+|+|.. +|+=. .|--.+..| .|.+..+|.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36779999999996 35310 011111111 24456799999999999999999883
No 56
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=87.90 E-value=0.81 Score=51.37 Aligned_cols=73 Identities=26% Similarity=0.237 Sum_probs=50.0
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 004219 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (767)
Q Consensus 56 ~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaE 134 (767)
+|=++++...+.+..+..|++|+++|+..|-| ++|.|+...=+. ...+.++++.|+++||.|++.+.|=+...
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~~ 74 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLKK 74 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHHT
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHHH
Confidence 45677776777889999999999999999999 999998633222 24788999999999999999998855443
No 57
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=86.82 E-value=11 Score=40.34 Aligned_cols=98 Identities=17% Similarity=0.314 Sum_probs=62.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeec
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLK 145 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi-lr~GPyicaEw~~GGlP~WL~ 145 (767)
...|++.|+.++++|++.|+..+ +.. ...+...+++ ..++.++.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 46799999999999999999942 222 2223344554 3478899999999999875 44431 01111
Q ss_pred cCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 004219 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (767)
Q Consensus 146 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 190 (767)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~ 113 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQL 113 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEe
Confidence 122356666666677777777766 32 5566654
No 58
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.19 E-value=6.5 Score=45.06 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=78.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEce-------------eCCCCCCCCCce-ecccchhHHHHHHHHHHcCcEEEeecCccc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv-------------~Wn~hEp~~G~y-df~g~~dL~~fl~la~~~GL~Vilr~GPyi 131 (767)
.+..-.+.|.+++++|+|||-.=| +|.... ||.+ -=.|..-|...|++|++.||.|+.+.-||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 677778999999999999996422 243332 4433 123444788999999999999999988887
Q ss_pred ccccCCCC---CCeeeccC-CCee-ecCCC-------hhHHHHHHHHHHHHH-HHHHhccccccCCCceEEeccccccC
Q 004219 132 CAEWNYGG---FPVWLKYV-PGIE-FRTDN-------GPFKAAMHKFTEKIV-SMMKAEKLFQTQGGPIILSQIENEFG 197 (767)
Q Consensus 132 caEw~~GG---lP~WL~~~-p~~~-~Rt~d-------~~y~~~~~~~~~~l~-~~l~~~~~~~~~gGpII~~QIENEyg 197 (767)
.|--..-. -|.|+... |+-. .|... .+...+++.|+..+. +.++++ .|=++|.+-=+.
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 76422111 36666643 4332 22221 234567888887777 555533 567788876554
No 59
>PRK12568 glycogen branching enzyme; Provisional
Probab=84.45 E-value=19 Score=44.31 Aligned_cols=55 Identities=22% Similarity=0.322 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEE-cee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 004219 72 DLIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (767)
Q Consensus 72 d~l~kmKa~G~N~V~~-yv~-------Wn~h-----Ep~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GP 129 (767)
+.|.-+|++|+|+|+. +|+ |... .|.+ .|....++.+|++.|+++||.|||..=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3468889999999996 342 3221 1111 3455679999999999999999988544
No 60
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.38 E-value=1.2 Score=46.83 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCC--cee-------cccchhHHHHHHHHHHcCcEEEeec
Q 004219 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYY-------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G--~yd-------f~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+.|..+|++|+|+|.+-=++......-| .-| |....+|.++++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 46788999999999998533332211111 112 3345799999999999999999885
No 61
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=83.11 E-value=28 Score=43.02 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-ee-------CCCCCC---CCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 004219 68 EMWPDLIQKAKDGGLDVIQTY-VF-------WNGHEP---TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~y-v~-------Wn~hEp---~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GP 129 (767)
+.|++.|..+|++|+|+|+.- |+ |..+-. .+ .-.|....+|.+|++.|+++||.|||..=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 347888999999999999963 32 332211 00 113455679999999999999999988533
No 62
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=82.65 E-value=2.2 Score=49.61 Aligned_cols=60 Identities=10% Similarity=0.258 Sum_probs=42.4
Q ss_pred ccHH---HHHHHHHHCCCCEEEEc-eeCCC-----CCCCC-Cce-------------ecccchhHHHHHHHHHHcCcEEE
Q 004219 68 EMWP---DLIQKAKDGGLDVIQTY-VFWNG-----HEPTQ-GNY-------------YFQDRYDLVRFIKLVQQAGLYVH 124 (767)
Q Consensus 68 ~~W~---d~l~kmKa~G~N~V~~y-v~Wn~-----hEp~~-G~y-------------df~g~~dL~~fl~la~~~GL~Vi 124 (767)
+.|. +.|.-+|++|+++|-+- ++-+. |--.+ .-| .|....||.++++.|++.||+||
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 4464 67888999999999873 55332 22222 112 23456799999999999999999
Q ss_pred eec
Q 004219 125 LRI 127 (767)
Q Consensus 125 lr~ 127 (767)
+..
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 885
No 63
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=82.23 E-value=14 Score=41.31 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=86.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHH---HcCcEEEeecCcccccccCCCCCC
Q 004219 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGFP 141 (767)
Q Consensus 65 ~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~---~~GL~Vilr~GPyicaEw~~GGlP 141 (767)
..|+..+..++.+|+.||+.--.|-.|- .|.+-|++-++..- +.+|...|. +.+-.|. =
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~----~ 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWT----R 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhh----h
Confidence 3677889999999999999999988884 45556666665543 345544443 1222221 1
Q ss_pred eeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCcccCCCcchHHHHHHHHHHHHhc
Q 004219 142 VWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL 221 (767)
Q Consensus 142 ~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~ 221 (767)
.|-.....+.+-...+. .+..++.++.|++..++..++--+|-||+++=--.+. .+-+++++.+++.+++.
T Consensus 117 ~w~g~~~~~l~~q~y~~-~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~~ 187 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYSG-EDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKEA 187 (345)
T ss_pred ccCCCCccccccccCCc-hhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHHc
Confidence 12222222211111110 1234667788888888755555589999987322111 24578999999999999
Q ss_pred CCCcceEEec
Q 004219 222 NTGVPWVMCK 231 (767)
Q Consensus 222 g~~vp~~~~~ 231 (767)
|+..+.+...
T Consensus 188 G~~giyii~~ 197 (345)
T PF14307_consen 188 GLPGIYIIAV 197 (345)
T ss_pred CCCceEEEEE
Confidence 9987665544
No 64
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=81.52 E-value=16 Score=38.81 Aligned_cols=132 Identities=14% Similarity=0.210 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeecc
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi-lr~GPyicaEw~~GGlP~WL~~ 146 (767)
-.|++.++.++++|+..|+..+. ..|+ .....+|+ ..++.++-++++++||.|. +.++.+ + .+|
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~~----- 80 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RFP----- 80 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---CcC-----
Confidence 47999999999999999999532 1121 01122333 3478999999999999875 333210 0 011
Q ss_pred CCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccc-CCCcchHHHHHHHHHHHHhcCCCc
Q 004219 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW-DIGAPGKAYAKWAAQMAVGLNTGV 225 (767)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~-~~~~~~~~y~~~L~~~~~~~g~~v 225 (767)
+.+.|+..++...+.++++++..+ .+ |.++|-+.--..+..... ..-..-.+.++.+.+++.+.|+.+
T Consensus 81 -----~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 81 -----FGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 223566666666666777766655 22 455655421100000000 000011245666777777777654
No 65
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=81.35 E-value=3.5 Score=48.11 Aligned_cols=66 Identities=17% Similarity=0.320 Sum_probs=43.8
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-HCCCCEEEEceeCCCC-C--------CCCC--ceecccchhHHHHHHHHHHcCcEEE
Q 004219 57 SGSIHYPRSTPEMWPDLIQKAK-DGGLDVIQTYVFWNGH-E--------PTQG--NYYFQDRYDLVRFIKLVQQAGLYVH 124 (767)
Q Consensus 57 sG~~Hy~r~~~~~W~d~l~kmK-a~G~N~V~~yv~Wn~h-E--------p~~G--~ydf~g~~dL~~fl~la~~~GL~Vi 124 (767)
-|+-|....-++.|+..|+.++ +.||..||+ |++. . ...| .|||+ .||.++|...++||+-+
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 3555555667888999999997 779999997 3332 1 1223 29999 99999999999999987
Q ss_pred eecC
Q 004219 125 LRIG 128 (767)
Q Consensus 125 lr~G 128 (767)
+..|
T Consensus 102 vel~ 105 (486)
T PF01229_consen 102 VELG 105 (486)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 7765
No 66
>PRK14705 glycogen branching enzyme; Provisional
Probab=81.21 E-value=29 Score=45.11 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=38.1
Q ss_pred HHHHHHHCCCCEEEE-cee-------CCCCCC--CCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 73 LIQKAKDGGLDVIQT-YVF-------WNGHEP--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~-yv~-------Wn~hEp--~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.|..+|++|+|+|+. +|+ |.+.-- ..=.=.|....||.+|++.|++.||.|||..
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999996 342 322100 0000124456899999999999999999874
No 67
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=80.99 E-value=3 Score=50.03 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=40.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEc-ee-------CCCCC-----CCCCceecccchhHHHHHHHHHHcCcEEEee
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTY-VF-------WNGHE-----PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~y-v~-------Wn~hE-----p~~G~ydf~g~~dL~~fl~la~~~GL~Vilr 126 (767)
.+.=.+.|.-+|+||+++|+.- |. |..-- |+. .|..-.||.+|||.|+++||-|||.
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3344668999999999999972 22 33211 111 2334479999999999999999987
No 68
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=80.55 E-value=18 Score=38.59 Aligned_cols=98 Identities=9% Similarity=0.151 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHc-CcEEEeecCcccccccCCCCCCeeecc
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~-GL~Vilr~GPyicaEw~~GGlP~WL~~ 146 (767)
..|++.|+.+|++|++.|++-+....... .......+++++.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 77999999999999999998553321111 1111346899999999999 6665543 2331 0
Q ss_pred CCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccc
Q 004219 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 194 (767)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIEN 194 (767)
.+...++.-++.....+++.++..+ .+ |-+.|.+...+
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g~ 108 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPGS 108 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCCC
Confidence 1223344445555555566665555 22 45566665543
No 69
>PRK01060 endonuclease IV; Provisional
Probab=79.91 E-value=30 Score=36.75 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=59.7
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE---EeecCcccccccCCCCCCeeecc
Q 004219 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV---HLRIGPYVCAEWNYGGFPVWLKY 146 (767)
Q Consensus 70 W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~V---ilr~GPyicaEw~~GGlP~WL~~ 146 (767)
+++.++.++++|++.|+..+. +-+.-.++.++- .++.++-++++++||.+ .+ -+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~------------~-- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL------------I-- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE------------e--
Confidence 899999999999999999543 112212222322 26888999999999973 22 23332 1
Q ss_pred CCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004219 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (767)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 191 (767)
.+-+.|+..+++..+.+++.++..+ .+ |.++|-+.
T Consensus 75 ----nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 75 ----NLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 1334567777777777777777665 33 45555554
No 70
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=79.82 E-value=1.2e+02 Score=34.68 Aligned_cols=242 Identities=16% Similarity=0.207 Sum_probs=121.8
Q ss_pred CCcccHHHHHHHHHHCCCCEEEE-------ceeCCCCCCCCCceecc-cchhHHHHHHHHHHcCcEEEeecCccccc-cc
Q 004219 65 STPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCA-EW 135 (767)
Q Consensus 65 ~~~~~W~d~l~kmKa~G~N~V~~-------yv~Wn~hEp~~G~ydf~-g~~dL~~fl~la~~~GL~Vilr~GPyica-Ew 135 (767)
..++.| .+.+|++|+.-|=. +-.|.-.-..-..-+-. ++--|.++.+.|+++||++-+ |... +|
T Consensus 81 fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~S~~DW 153 (384)
T smart00812 81 FDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YHSLFDW 153 (384)
T ss_pred CCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----EcCHHHh
Confidence 344444 56788999985532 12244432211111111 233567899999999997765 4333 67
Q ss_pred CCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCcccCCCcchHHHHHHHH
Q 004219 136 NYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAA 215 (767)
Q Consensus 136 ~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~ 215 (767)
.. |.|....+....+.+.+.|.++++.|+.+|.+.+.++ ||-|+|- +-..+.. ...--.+.|.
T Consensus 154 ~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~~l~ 216 (384)
T smart00812 154 FN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSKEFL 216 (384)
T ss_pred CC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHHHHH
Confidence 54 4443211111123456788888888888888888732 3445552 2111110 0111234566
Q ss_pred HHHHhcCCCc-ceEEecCCCCCCccccCCCCcc-c-cccCCCC-CCCCcc-ccccccccccccCC-CCCCCChHHHHHHH
Q 004219 216 QMAVGLNTGV-PWVMCKQDDAPDPVINTCNGFY-C-EKFVPNQ-NYKPKM-WTEAWTGWFTEFGS-AVPTRPAEDLVFSV 289 (767)
Q Consensus 216 ~~~~~~g~~v-p~~~~~~~~~~~~v~~~~ng~~-~-~~~~~~~-p~~P~~-~tE~~~GWf~~WG~-~~~~~~~~~~~~~~ 289 (767)
++++++..+. -.+.++.... . .+...++. + +...+.. ...|-- ++=.-.+|+=+-++ ....++++++...+
T Consensus 217 ~~~~~~qP~~~~vvvn~R~~~-~--~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~l 293 (384)
T smart00812 217 AWLYNLSPVKDTVVVNDRWGG-T--GCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRDL 293 (384)
T ss_pred HHHHHhCCCCceEEEEccccc-c--CCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHHH
Confidence 6666654432 1123332210 0 00000011 1 1111110 011110 00011245444333 23357889999999
Q ss_pred HHHHHcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcCCC
Q 004219 290 ARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPAL 357 (767)
Q Consensus 290 ~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~i~~~~~~l 357 (767)
.+..++|++++ + .-+-+.+|.+..+.-..|+++.+.++...+.+
T Consensus 294 ~~~Vsk~GnlL---L---------------------NVgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaI 337 (384)
T smart00812 294 VDIVSKGGNLL---L---------------------NVGPKADGTIPEEEEERLLEIGKWLKVNGEAI 337 (384)
T ss_pred hhhcCCCceEE---E---------------------ccCCCCCCCCCHHHHHHHHHHHHHHHhCCcee
Confidence 99999998742 2 12345678876666778999999998765544
No 71
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=78.18 E-value=4 Score=48.37 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEE-cee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 71 PDLIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~-yv~-------Wn~h-----Ep~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.++|..+|++|+|+|.. +|+ |... .+.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34689999999999996 342 3221 1111 24456799999999999999999884
No 72
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=77.69 E-value=32 Score=39.11 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=54.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc-cchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCee
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVW 143 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~-g~~dL~~fl~la~~~GL~Vi-lr~GPyicaEw~~GGlP~W 143 (767)
++....+++++++++|+..|+.. ..+ -.|-..+.. -..++.++-++++++||.|. +-++-+....+..|+
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~---~~d-l~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~---- 101 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFH---DDD-LIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG---- 101 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEec---ccc-cCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC----
Confidence 44567899999999999999963 110 011111110 02357899999999999975 343211111222222
Q ss_pred eccCCCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 144 L~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
+-+.|+..+++.-+.+++.++.-+
T Consensus 102 --------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 --------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334567666655555566666555
No 73
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=77.30 E-value=12 Score=40.51 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=62.4
Q ss_pred eeEEEccCcEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc--cchhHHHHHH
Q 004219 37 ASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLVRFIK 114 (767)
Q Consensus 37 ~~v~~d~~~~~ldGkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~--g~~dL~~fl~ 114 (767)
..|.+ ..+.+.+.+++++.|=.=- -.++.-.+..+++|++|+..++.|.+=+.-. -+.|. |...+..+-+
T Consensus 14 ~~~~~--~~~~~g~~~~~~iaGPCsi--e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~ 85 (266)
T PRK13398 14 TIVKV--GDVVIGGEEKIIIAGPCAV--ESEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKE 85 (266)
T ss_pred cEEEE--CCEEEcCCCEEEEEeCCcC--CCHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHH
Confidence 33444 3367777789999883311 1567778889999999999999998874433 34666 5788999999
Q ss_pred HHHHcCcEEEeec
Q 004219 115 LVQQAGLYVHLRI 127 (767)
Q Consensus 115 la~~~GL~Vilr~ 127 (767)
.|++.||.++-.|
T Consensus 86 ~~~~~Gl~~~te~ 98 (266)
T PRK13398 86 VGDKYNLPVVTEV 98 (266)
T ss_pred HHHHcCCCEEEee
Confidence 9999999998876
No 74
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=74.78 E-value=2.6 Score=42.38 Aligned_cols=63 Identities=24% Similarity=0.200 Sum_probs=29.4
Q ss_pred CcceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceeeeecCcccccCCCcEEEEEEecC
Q 004219 681 AMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWG 754 (767)
Q Consensus 681 g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~PqqtlYhVP~~~Lk~g~N~ivvfE~~g 754 (767)
.-++=+|.||| ..+..+... .| -+.|.+|++ +.+|+.+.--+.||+..|++|+|+|.+=-..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~--~~-~d~~~~r~g-------~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAP--FG-NDNAIYRSG-------IHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccc--cC-CCCceeeCc-------eecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 44777999999 777766311 22 234444333 12334555566799999999999997744444
No 75
>PRK12313 glycogen branching enzyme; Provisional
Probab=74.74 E-value=6.2 Score=47.64 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=37.6
Q ss_pred HHHHHHCCCCEEEE-cee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 74 IQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 74 l~kmKa~G~N~V~~-yv~-------Wn~h-----Ep~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
|..+|++|+|+|.. +|+ |... .+.| .|.+..+|.+|++.|+++||.|||..
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999995 343 2111 1111 35566899999999999999999883
No 76
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=74.19 E-value=10 Score=49.26 Aligned_cols=111 Identities=15% Similarity=0.270 Sum_probs=65.0
Q ss_pred cEEECCEEEEEEEE-Ee--eCCCC--CcccHHHHHHHHHHCCCCEEEE-cee-CCC-CCC--CCCcee----c----ccc
Q 004219 45 AVIINGQKRILISG-SI--HYPRS--TPEMWPDLIQKAKDGGLDVIQT-YVF-WNG-HEP--TQGNYY----F----QDR 106 (767)
Q Consensus 45 ~~~ldGkp~~l~sG-~~--Hy~r~--~~~~W~d~l~kmKa~G~N~V~~-yv~-Wn~-hEp--~~G~yd----f----~g~ 106 (767)
.+.|||++++.+.+ ++ ..+++ +-+.|++.|+.+|++|.|+|.. +++ =.. ..| ..+.+. | .+.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 45666633333222 22 34554 4577999999999999999985 343 110 000 112222 3 356
Q ss_pred hhHHHHHHHHHHc-CcEEEeecCcccccccCCCCC-CeeeccCCCeeecCCChhHHH
Q 004219 107 YDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGF-PVWLKYVPGIEFRTDNGPFKA 161 (767)
Q Consensus 107 ~dL~~fl~la~~~-GL~Vilr~GPyicaEw~~GGl-P~WL~~~p~~~~Rt~d~~y~~ 161 (767)
.|+.++++.|++. ||++|+.. -|+.-+. =.|+.++|+.-.-..+.++++
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhh
Confidence 7899999999996 99999874 2333332 247777776433333334443
No 77
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=74.10 E-value=15 Score=41.83 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
..+.|+++++.+|++||+.... |+.- ...+.. .-|...++.|++.|+++++-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaL----Nig~--~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFAL----NIGS--SDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----eccc--CCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7889999999999999999888 5442 222333 378889999999999999987
No 78
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=74.03 E-value=5 Score=47.52 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHCCCCEEEEc-eeCCCCCCCCCcee----------cccchhHHHHHHHHHHcCcEEEeec
Q 004219 69 MWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~y-v~Wn~hEp~~G~yd----------f~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
-+.+.|..+|++|+|+|-+- ++-+-.. ...|+ |....+|.++++.|+++||+|||..
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788999999999999873 4422110 11232 4456799999999999999999884
No 79
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=73.82 E-value=6.3 Score=46.91 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-eeCCCCCCCCCce--------ecccc----hhHHHHHHHHHHcCcEEEeecCcccccc
Q 004219 68 EMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNY--------YFQDR----YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~y-v~Wn~hEp~~G~y--------df~g~----~dL~~fl~la~~~GL~Vilr~GPyicaE 134 (767)
+.=++.|.+|+...||.|+.| ..|.+|.|-|+.= |+.++ .-+...|+.|++.|+.++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456889999999999999999 8899999987543 23332 4688999999999999985432222222
Q ss_pred c--CCCCCCeeec
Q 004219 135 W--NYGGFPVWLK 145 (767)
Q Consensus 135 w--~~GGlP~WL~ 145 (767)
. ..|=.|.|-+
T Consensus 198 ~~~~~gv~~eW~l 210 (559)
T PF13199_consen 198 NYEEDGVSPEWGL 210 (559)
T ss_dssp T--S--SS-GGBE
T ss_pred CcccccCCchhhh
Confidence 2 3556788876
No 80
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=72.66 E-value=6.3 Score=42.09 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
+...++-++.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 667899999999999999998 45555554 34677999999999999999997
No 81
>PRK10785 maltodextrin glucosidase; Provisional
Probab=71.92 E-value=7.8 Score=46.53 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCEEEE-ceeCCCCCCCCCcee----------cccchhHHHHHHHHHHcCcEEEeec
Q 004219 71 PDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~-yv~Wn~hEp~~G~yd----------f~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+.|.-+|++|+|+|-. +||=+ |.--.|| |.+..+|.++++.|++.||+|||..
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s---~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTA---PSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccC---CCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 56789999999999996 45522 1111232 4456899999999999999999874
No 82
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=71.46 E-value=11 Score=41.85 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=59.3
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCc-eecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 004219 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (767)
Q Consensus 56 ~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~-ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaE 134 (767)
+|=++.+.|.+.+.=..-|++|...|+..|-| ++|.|.+.. --|. -+.++++.|.++||+||+..-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 56677788888888889999999999999988 999998842 1122 577999999999999999998877555
No 83
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.32 E-value=6.9 Score=38.81 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=69.9
Q ss_pred HHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeec
Q 004219 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFR 153 (767)
Q Consensus 74 l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~R 153 (767)
|+.++++|+..|+............ ...++++.++++++||.+..--.+. .+.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~---~~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPT---NFWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEE---SSSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEeccc---cccc----------cccccc
Confidence 5789999999999954432221111 3478999999999999965322111 1100 101123
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccc--cccCCcccC-CCcchHHHHHHHHHHHHhcCCCc
Q 004219 154 TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE--NEFGPVEWD-IGAPGKAYAKWAAQMAVGLNTGV 225 (767)
Q Consensus 154 t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIE--NEyg~~~~~-~~~~~~~y~~~L~~~~~~~g~~v 225 (767)
+..++ ++...+.+.+.++..+ .+ |.+.|.+..- +........ .-..-.+.++.|.+.+.+.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 34444 7777778888888777 32 5677777754 222111000 00012345566666777777543
No 84
>PLN02960 alpha-amylase
Probab=70.33 E-value=8.7 Score=47.81 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEE-cee-------CCCCCCCC--CceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 71 PDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~-yv~-------Wn~hEp~~--G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
++.|.-+|++|+|+|+. .|+ |...-..- =.-.|....+|.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45699999999999997 343 33211000 00123456799999999999999999884
No 85
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=69.42 E-value=8.6 Score=46.20 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCEEEE-cee---------------CCCCC-----CCCCcee----cc--cchhHHHHHHHHHHcCcEEE
Q 004219 72 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PTQGNYY----FQ--DRYDLVRFIKLVQQAGLYVH 124 (767)
Q Consensus 72 d~l~kmKa~G~N~V~~-yv~---------------Wn~hE-----p~~G~yd----f~--g~~dL~~fl~la~~~GL~Vi 124 (767)
+.|.-+|++|+|+|+. +|+ |...- |. +.|- +. ...+|.+|++.|++.||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 343 22221 10 0110 10 12689999999999999999
Q ss_pred eec
Q 004219 125 LRI 127 (767)
Q Consensus 125 lr~ 127 (767)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 884
No 86
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=68.30 E-value=11 Score=44.90 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=41.0
Q ss_pred HHHHHHHHHHCCCCEEEE-ceeCCCCCCC-CCcee----------cccchhHHHHHHHHHHcCcEEEeec
Q 004219 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT-QGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 70 W~d~l~kmKa~G~N~V~~-yv~Wn~hEp~-~G~yd----------f~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
+.++|..+|++|+++|-+ +|+-+ |. ...|| |....||.++++.|+++||+|||..
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 568899999999999987 35422 21 11232 3456799999999999999999874
No 87
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=68.14 E-value=7.6 Score=45.92 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHCCCCEEEEc-eeCCCCCCC-CCcee----------cccchhHHHHHHHHHHcCcEEEeec
Q 004219 69 MWPDLIQKAKDGGLDVIQTY-VFWNGHEPT-QGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~y-v~Wn~hEp~-~G~yd----------f~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
-+.+.|.-+|++|+|+|-.- |+=+ +. ...|| |....++.++++.|++.||+|||..
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~---~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQS---PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCC---CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 46788999999999999863 4311 11 12222 4456799999999999999999863
No 88
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.08 E-value=78 Score=33.42 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi 124 (767)
..+++.|+.++++|++.|++..-.. |+-.+ +++ ..+++++-++++++||.|.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEE
Confidence 3599999999999999999832100 11011 121 2478889999999999975
No 89
>PRK09505 malS alpha-amylase; Reviewed
Probab=67.98 E-value=11 Score=46.04 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCCCCEEEE-ceeCCCCCCC----CC--------c----------eecccchhHHHHHHHHHHcCcEEEee
Q 004219 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT----QG--------N----------YYFQDRYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 70 W~d~l~kmKa~G~N~V~~-yv~Wn~hEp~----~G--------~----------ydf~g~~dL~~fl~la~~~GL~Vilr 126 (767)
+.+.|..+|++|+|+|-+ .++=+.|... .| . -.|....+|+++++.|+++||+||+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999985 4554433211 11 1 12445679999999999999999988
Q ss_pred c
Q 004219 127 I 127 (767)
Q Consensus 127 ~ 127 (767)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 90
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=66.98 E-value=17 Score=40.34 Aligned_cols=111 Identities=16% Similarity=0.250 Sum_probs=68.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-------ceeCCCCCCCCCceecc-c-chhHHHHHHHHHHcCcEEEeecCcccccccC
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-D-RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 136 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~-------yv~Wn~hEp~~G~ydf~-g-~~dL~~fl~la~~~GL~Vilr~GPyicaEw~ 136 (767)
.++.-+..|+.+|+.|+|+|=+ .|.+....|..-+..-. . ..|+.++++.++++|||+|.|+=-+- ...-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk-D~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK-DPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-ChHH
Confidence 3456788999999999999864 34454444433222111 1 26999999999999999999963221 0100
Q ss_pred CCCCCeeeccCCCe-eecCCC-----hhHHHHHHHHHHHHHHHHHhc
Q 004219 137 YGGFPVWLKYVPGI-EFRTDN-----GPFKAAMHKFTEKIVSMMKAE 177 (767)
Q Consensus 137 ~GGlP~WL~~~p~~-~~Rt~d-----~~y~~~~~~~~~~l~~~l~~~ 177 (767)
..--|.|-.+..+- ..|... .+|.+++.+|.-.|+..+++.
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 11145565532211 112111 257889999999999888844
No 91
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=66.88 E-value=4.7 Score=48.13 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=27.0
Q ss_pred CcccccCCCCCCCcCCCCCchhHHHHHHHH
Q 004219 318 FVATSYDYDAPIDEYGLLNEPKWGHLRDLH 347 (767)
Q Consensus 318 ~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~ 347 (767)
...|||||+||+.|+|+++++||.++|+..
T Consensus 324 ~~hts~d~~ep~lv~gd~~~~kyg~~~~~C 353 (649)
T KOG0496|consen 324 PLHTSYDYCEPALVAGDITTAKYGNLREAC 353 (649)
T ss_pred cchhhhhhcCccccccCcccccccchhhHH
Confidence 478999999999999998899999999543
No 92
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=66.50 E-value=12 Score=44.02 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCC---CceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ---GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~---G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~ 145 (767)
.++++++.||++|+++-|.-|-|+..=|.- +.-+-.|..-...+|+...++||..++-. | -| .+|.+|-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 478999999999999999999999987753 56788888888899999999999966543 1 34 4788876
Q ss_pred cC-CCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004219 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (767)
Q Consensus 146 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 191 (767)
+. -+-.-+..=..|+++++--|++...++| ....-|.+.|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 52 2221122234577888888888888887 54434666666654
No 93
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=65.84 E-value=22 Score=38.84 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 004219 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (767)
Q Consensus 65 ~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~-~G~ydf~g~--~dL~~fl~la~~~GL~Vilr~GPyicaE 134 (767)
...+..++.++++|+.||.+=.+.+=..++... -+.|.|+-. -|..++++..++.|++|++..=|+|+..
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~ 93 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQK 93 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 356678999999999997764444333333221 135555532 3899999999999999999988998753
No 94
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=65.49 E-value=2.5 Score=44.34 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCccccc
Q 004219 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyica 133 (767)
-...+.+.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+. +|..+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE--~~l~~ 136 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE--PYLRG 136 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE--ECECH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE--EecCc
Confidence 5678899999999999999997765554344444 8999999999999999999 44433
No 95
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=64.00 E-value=99 Score=32.54 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 004219 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (767)
Q Consensus 70 W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vil 125 (767)
++++|++++++|++.|+.. . |. ..+++++.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 7899999999999999982 1 11 13789999999999999854
No 96
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=62.25 E-value=12 Score=40.27 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=53.4
Q ss_pred CCCcceEEEEEEecCCCCcccccCCCCCceEecCcccEEEEEECCEEeCcccc-----h--hhHHHhhccccc-------
Q 004219 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGKRSI-----M--TDMIMFLGANIA------- 540 (767)
Q Consensus 475 ~d~~gyllYrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~~~~~~-----~--~~~~~~~~~~~~------- 540 (767)
.|..|.+||+.++.++..- +.-.++...|++.++|-.|.|||||.-+-++.. - +-.+-++|.-++
T Consensus 84 rdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP~~~~is~~~~~g~~~~~dn~L~~ 162 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLPLEPDISALVFFGPLPAIDNNLLS 162 (297)
T ss_pred ccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeecccccCccccchhhhhhhhccccccccCcccc
Confidence 4688999999998875432 122344567899999999999999886544421 1 112334444332
Q ss_pred ---cccccccccccceeee
Q 004219 541 ---CQQLTFSFYPYAGTVY 556 (767)
Q Consensus 541 ---~~~~~~~~~~~~G~~~ 556 (767)
.|+-+|+|.+|+|...
T Consensus 163 ~t~~~~~~~dffnYag~~~ 181 (297)
T KOG2024|consen 163 WTGPNSFCFDFFNYAGEQR 181 (297)
T ss_pred cccCCcccccCCCchhhhe
Confidence 2567789999998753
No 97
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=61.95 E-value=32 Score=38.48 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=59.3
Q ss_pred cEEECCEEEEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceeccc--chhHHHHHHHHHHcCc
Q 004219 45 AVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFIKLVQQAGL 121 (767)
Q Consensus 45 ~~~ldGkp~~l~sG~~Hy~r~-~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g--~~dL~~fl~la~~~GL 121 (767)
.+.+.|.++.++.| +--+ .++.-.+..+.+|++|.+.++.|+|= |+---|.|.| ..-|..+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 46777788888888 3333 56677888889999999999999995 4444477876 5678778888999999
Q ss_pred EEEeec
Q 004219 122 YVHLRI 127 (767)
Q Consensus 122 ~Vilr~ 127 (767)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 998876
No 98
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=61.68 E-value=69 Score=33.84 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=60.7
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCce-ecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCC
Q 004219 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVP 148 (767)
Q Consensus 70 W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~y-df~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p 148 (767)
-++.++.+.++|++.|+. ...+|+.-.- +++ ..+++++-++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 457899999999999999 4555533210 222 236889999999999986543 3432
Q ss_pred CeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004219 149 GIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (767)
Q Consensus 149 ~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 191 (767)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 11345677777777777777777665 22 55666554
No 99
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=61.25 E-value=19 Score=44.83 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=45.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-eeCCCCCCCCCce----------ecccchhHHHHHHHHHHcCcEEEeecCc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNY----------YFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~y-v~Wn~hEp~~G~y----------df~g~~dL~~fl~la~~~GL~Vilr~GP 129 (767)
+-+.+.+.|.-++++|+++|-.- ++ .......--| .|.+..++.+|++.|+++||.||+..=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~-~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPIL-TAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCc-cCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44568899999999999999763 33 1110011111 2457789999999999999999988544
No 100
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.04 E-value=1.3e+02 Score=31.97 Aligned_cols=98 Identities=18% Similarity=0.358 Sum_probs=59.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeec
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLK 145 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi-lr~GPyicaEw~~GGlP~WL~ 145 (767)
...|++.++.++++|+..|+..+. ..++ ....++++ ..+++++-++++++||.|. +.++... .++
T Consensus 20 ~~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~~-------~~~---- 85 (283)
T PRK13209 20 GECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAHR-------RFP---- 85 (283)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEeccccc-------ccC----
Confidence 346999999999999999999432 1111 01122333 2368899999999999875 3332110 011
Q ss_pred cCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 004219 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (767)
Q Consensus 146 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 190 (767)
+-+.|+.-++...+.+++.++..+ .+ |.++|.+
T Consensus 86 ------~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~ 118 (283)
T PRK13209 86 ------LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQL 118 (283)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEE
Confidence 112455566666667777777666 22 5666655
No 101
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=60.59 E-value=34 Score=41.78 Aligned_cols=127 Identities=13% Similarity=0.064 Sum_probs=72.2
Q ss_pred EEEEEEEEEeeCCC-CC----cccHHHHHHHHHHCCCCEEE---------------EceeCCCCCCCCCceecccchhHH
Q 004219 51 QKRILISGSIHYPR-ST----PEMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPTQGNYYFQDRYDLV 110 (767)
Q Consensus 51 kp~~l~sG~~Hy~r-~~----~~~W~d~l~kmKa~G~N~V~---------------~yv~Wn~hEp~~G~ydf~g~~dL~ 110 (767)
.+.+++...+-|-. .. .+.-...|+.+|++|+|||- .|++|.+.--+...||-
T Consensus 312 ~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~~------- 384 (671)
T PRK14582 312 SPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFNR------- 384 (671)
T ss_pred CCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcCH-------
Confidence 34455555444433 22 24467789999999999985 46667322222222321
Q ss_pred HHHHHHHHcCcEEEeecCccccc---------ccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccc
Q 004219 111 RFIKLVQQAGLYVHLRIGPYVCA---------EWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQ 181 (767)
Q Consensus 111 ~fl~la~~~GL~Vilr~GPyica---------Ew~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~ 181 (767)
-...++.+.|+.|..|..||-.. +++..+-|.-.. |+-..| =.+|..++++|++.|..-|+.+
T Consensus 385 ~aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~---- 456 (671)
T PRK14582 385 VAWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH---- 456 (671)
T ss_pred HHHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh----
Confidence 13455889999999999998532 111111111111 111122 2346788999999999888743
Q ss_pred cCCCceEEeccccc
Q 004219 182 TQGGPIILSQIENE 195 (767)
Q Consensus 182 ~~gGpII~~QIENE 195 (767)
.+|=++|...+
T Consensus 457 ---~~~dGilf~Dd 467 (671)
T PRK14582 457 ---AAFDGILFHDD 467 (671)
T ss_pred ---CCCceEEeccc
Confidence 24555665554
No 102
>PLN02361 alpha-amylase
Probab=59.97 E-value=21 Score=40.94 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCC---CCCc-ee----cccchhHHHHHHHHHHcCcEEEeec
Q 004219 71 PDLIQKAKDGGLDVIQTYVFWNGHEP---TQGN-YY----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~yv~Wn~hEp---~~G~-yd----f~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+.|..+|++|+++|-+.=+.....+ .+.. |+ |....+|.++++.|++.||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 56788899999999987533322111 1221 22 4456799999999999999999875
No 103
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=59.79 E-value=19 Score=38.37 Aligned_cols=53 Identities=11% Similarity=0.322 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GP 129 (767)
....++-++..|+.||++|++ ..|..+++ ..+..++|+.++++||.|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 356788888999999999998 56666665 347789999999999999988874
No 104
>PRK09989 hypothetical protein; Provisional
Probab=59.58 E-value=88 Score=32.95 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vil 125 (767)
-.+++|++++++|+..|++..+|. .+..++.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999843321 2356788889999999874
No 105
>PRK12677 xylose isomerase; Provisional
Probab=59.58 E-value=90 Score=35.55 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=56.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc---cchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCe
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPV 142 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~---g~~dL~~fl~la~~~GL~Vi-lr~GPyicaEw~~GGlP~ 142 (767)
+-.+++.+++++++|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-|.-+.+..+..|+
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~--- 100 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA--- 100 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc---
Confidence 3457999999999999999882 1111112221 12358899999999999976 544322111222222
Q ss_pred eeccCCCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 143 WLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 143 WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 ---------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 ---------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344567777766666666666555
No 106
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=59.13 E-value=29 Score=28.73 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vil 125 (767)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4566788999999999999999732 333 58777755 4778999999999988754
No 107
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=58.64 E-value=15 Score=47.75 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCEEEE-ceeCCCCCCC---CC-----cee----------cc--cchhHHHHHHHHHHcCcEEEeec
Q 004219 72 DLIQKAKDGGLDVIQT-YVFWNGHEPT---QG-----NYY----------FQ--DRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 72 d~l~kmKa~G~N~V~~-yv~Wn~hEp~---~G-----~yd----------f~--g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
+.|.-+|++|+|+|+. +|+=...|.. .| -|+ |. ...++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4577999999999996 4552222211 11 022 23 56799999999999999999883
No 108
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.75 E-value=75 Score=34.79 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=52.3
Q ss_pred CCCCcccHHHHHHHHHHCCCC--EEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 004219 63 PRSTPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (767)
Q Consensus 63 ~r~~~~~W~d~l~kmKa~G~N--~V~~yv~Wn~hEp~~G~ydf~g~--~dL~~fl~la~~~GL~Vilr~GPyicaE 134 (767)
.....+.-++.++++++.|+. +|-+=..|. ..-|.|.|+-. -|..++++..++.|+++++..=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 446777889999999999965 444434452 34566666532 3899999999999999999999999753
No 109
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=56.64 E-value=25 Score=44.02 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=45.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-eeCCCCCCCCC---ce---e-------cccchhHHHHHHHHHHcCcEEEeecCc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQG---NY---Y-------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~y-v~Wn~hEp~~G---~y---d-------f~g~~dL~~fl~la~~~GL~Vilr~GP 129 (767)
+-+.+.+.|..++++|+|+|-.- ++ +..+| .| | |.+..++.+|++.|+++||.|||..=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44568999999999999999863 32 11122 12 2 346789999999999999999988644
No 110
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=55.98 E-value=24 Score=47.18 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCC---cee----------cccchhHHHHHHHHHHcCcEEEeecCc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG---NYY----------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G---~yd----------f~g~~dL~~fl~la~~~GL~Vilr~GP 129 (767)
+-..|.+.|..+|++|+|+|-.-=++ +..+| -|| |.+..++.++++.|+++||.|||..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45668999999999999999874222 22222 222 457789999999999999999988544
No 111
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=54.19 E-value=62 Score=34.59 Aligned_cols=97 Identities=18% Similarity=0.334 Sum_probs=65.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCC--CceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeee
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 144 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~--G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL 144 (767)
.-.|+++|.-+|++||+-|++ +.-|..+ -+.||+. ...-.+.+++.+.|+. . |-+|=.
T Consensus 17 ~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv~----i-pSmClS---------- 76 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGVR----I-PSMCLS---------- 76 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCCC----c-cchhhh----------
Confidence 456999999999999999999 7778755 4678873 2455778888999983 3 333311
Q ss_pred ccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 004219 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (767)
Q Consensus 145 ~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QI 192 (767)
.+.-..+-+.|+.-++.....+.+-+..-. .+ -|=-+|+
T Consensus 77 -aHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL 115 (287)
T COG3623 77 -AHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL 115 (287)
T ss_pred -hhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee
Confidence 111112557899888887777777665444 33 2556675
No 112
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=53.06 E-value=34 Score=34.33 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=30.9
Q ss_pred CceEecCcccEEEEEECCEEeCcccchhhHHHhhccccccccccccccccceeeeccCCC--CceEEeeeeecCCCccEE
Q 004219 502 PLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYGSLEN--PKLTFSKNVKLRPGVNKI 579 (767)
Q Consensus 502 ~~L~i~~~~d~a~vfvng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~--~~~~~~~~~~l~~g~~~L 579 (767)
..|.|.. ..+..+||||+.++...+.+ |. .+... .-.++++.--|+.|.|+|
T Consensus 6 A~l~isa-~g~Y~l~vNG~~V~~~~l~P-----------------------~~--t~y~~~~~Y~tyDVt~~L~~G~N~i 59 (172)
T PF08531_consen 6 ARLYISA-LGRYELYVNGERVGDGPLAP-----------------------GW--TDYDKRVYYQTYDVTPYLRPGENVI 59 (172)
T ss_dssp -EEEEEE-ESEEEEEETTEEEEEE---------------------------------BTTEEEEEEEE-TTT--TTEEEE
T ss_pred EEEEEEe-CeeEEEEECCEEeeCCcccc-----------------------cc--ccCCCceEEEEEeChHHhCCCCCEE
Confidence 3566654 36779999999995432211 10 00001 112444443478899999
Q ss_pred EEEEeccCc
Q 004219 580 SLLSTSVGL 588 (767)
Q Consensus 580 ~ILven~Gr 588 (767)
.|++-+...
T Consensus 60 av~lg~gw~ 68 (172)
T PF08531_consen 60 AVWLGNGWY 68 (172)
T ss_dssp EEEEEE--S
T ss_pred EEEEeCCcc
Confidence 999976443
No 113
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=52.20 E-value=23 Score=43.32 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCC---CCCC-----cee----------c---ccchhHHHHHHHHHHcCcEEEeec
Q 004219 73 LIQKAKDGGLDVIQT-YVFWNGHE---PTQG-----NYY----------F---QDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~-yv~Wn~hE---p~~G-----~yd----------f---~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.|.-+|++|+|+|.. +|+=...+ ...| -|| | ....+|.++++.|++.||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999996 35411111 1111 121 1 124689999999999999999984
No 114
>PRK03705 glycogen debranching enzyme; Provisional
Probab=50.24 E-value=27 Score=42.60 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=36.7
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCCCCC---C-----cee----------ccc-----chhHHHHHHHHHHcCcEEEeec
Q 004219 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-----NYY----------FQD-----RYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~-yv~Wn~hEp~~---G-----~yd----------f~g-----~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.|.-+|++|+|+|.. +|+=...++.. | -|| |.. ..++.++++.|++.||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 588999999999996 34311111110 1 011 221 2479999999999999999884
No 115
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=49.77 E-value=2.4e+02 Score=30.10 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCce--eccc--chhHHHHHHHHHHcCcEEEeecCccc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY--YFQD--RYDLVRFIKLVQQAGLYVHLRIGPYV 131 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~y--df~g--~~dL~~fl~la~~~GL~Vilr~GPyi 131 (767)
..+...+.++.+++.||-.=.+.+=+...+. .+.| +|+- --|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5666888999999999986555554444433 3555 4432 23899999999999999999988877
No 116
>PLN00196 alpha-amylase; Provisional
Probab=49.49 E-value=41 Score=38.92 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCEEEEc-eeCCC--CCCCCCc-ee-----cccchhHHHHHHHHHHcCcEEEeec
Q 004219 71 PDLIQKAKDGGLDVIQTY-VFWNG--HEPTQGN-YY-----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~y-v~Wn~--hEp~~G~-yd-----f~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+.|..+|++|+++|-+. ++=+. |--.+.. |+ |....+|.++++.|++.||.||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 578889999999999875 33221 2112211 22 3345799999999999999999885
No 117
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=48.96 E-value=56 Score=35.59 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=67.0
Q ss_pred EEEEEEeeCCCCCcc-cHH---HHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 004219 54 ILISGSIHYPRSTPE-MWP---DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (767)
Q Consensus 54 ~l~sG~~Hy~r~~~~-~W~---d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GP 129 (767)
+.+++..|+...|.. ..+ ++|++-.++|.+.+-|=. .||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~----------~Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQL----------FYDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccc----------eecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 567888887664332 222 344444469999998822 34444 7889999999997665444444
Q ss_pred ccc---------cccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 130 YVC---------AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 130 yic---------aEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
..+ .+|..--+|.|+.+.=. ....++....+.--++..++++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 57776678999986200 0112234455666677777777776
No 118
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=48.26 E-value=2.7e+02 Score=30.57 Aligned_cols=118 Identities=15% Similarity=0.067 Sum_probs=79.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~ 145 (767)
.-+.-+.+|+.+|.-+. .||+|- +...-|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 35567889999999887 999963 223468889999999999999876 332
Q ss_pred cCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccc--CCcccCCCcchHHHHHHHHHHHHhcCC
Q 004219 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF--GPVEWDIGAPGKAYAKWAAQMAVGLNT 223 (767)
Q Consensus 146 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEy--g~~~~~~~~~~~~y~~~L~~~~~~~g~ 223 (767)
. |-. ..+++ .++..+. + +..--.|-.+-|.||- +.-.. ...--+|+...|..+++.|.
T Consensus 111 d---------d~~--~~~~~---til~ay~--~--~~~~d~v~~v~VGnEal~r~~~t--asql~~~I~~vrsav~~agy 170 (305)
T COG5309 111 D---------DIH--DAVEK---TILSAYL--P--YNGWDDVTTVTVGNEALNRNDLT--ASQLIEYIDDVRSAVKEAGY 170 (305)
T ss_pred c---------chh--hhHHH---HHHHHHh--c--cCCCCceEEEEechhhhhcCCCC--HHHHHHHHHHHHHHHHhcCC
Confidence 2 111 12222 3333333 2 1223578899999995 32211 11235799999999999999
Q ss_pred CcceEEecCC
Q 004219 224 GVPWVMCKQD 233 (767)
Q Consensus 224 ~vp~~~~~~~ 233 (767)
++|+.+.+.+
T Consensus 171 ~gpV~T~dsw 180 (305)
T COG5309 171 DGPVTTVDSW 180 (305)
T ss_pred CCceeecccc
Confidence 9999988875
No 119
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=48.26 E-value=1.1e+02 Score=33.64 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee----CCCCC-C--CCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE-P--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~----Wn~hE-p--~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
+.++-++.++.|...|+|.+..|+- +.-+. - .+|.|.- .++.++++.|++.||.||-.+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC
Confidence 4567899999999999999998753 32221 1 1344443 499999999999999999654
No 120
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=47.78 E-value=94 Score=35.62 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=56.5
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCC----Cceecccc---hhHHHHHHHHHHcCcEEEeecCccccc
Q 004219 61 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDR---YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (767)
Q Consensus 61 Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~----G~ydf~g~---~dL~~fl~la~~~GL~Vilr~GPyica 133 (767)
+|+.+..+.-.+.+++++++|++.+-+=--|....... |.+--+-. .-|..+++.+++.||..=|+..|-+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46677788888999999999998766655586542211 32221110 248999999999999998888886654
Q ss_pred ccC--CCCCCeeeccCCC
Q 004219 134 EWN--YGGFPVWLKYVPG 149 (767)
Q Consensus 134 Ew~--~GGlP~WL~~~p~ 149 (767)
.=+ .-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 211 2247999987554
No 121
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=46.25 E-value=36 Score=35.63 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vil 125 (767)
.+++.+++++++|++.|+...++ ..++.++.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 58999999999999999984321 12578899999999999863
No 122
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=44.44 E-value=39 Score=43.59 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 004219 107 YDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 107 ~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+|.++++.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999984
No 123
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=43.23 E-value=25 Score=35.23 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEeCCcceEEEEECCeeccccc
Q 004219 676 ALDMGAMGKGMVWINGQSIGRHW 698 (767)
Q Consensus 676 ~Ld~~g~gKG~vwVNG~nlGRYW 698 (767)
.|..++.|+=.+||||+.+|+--
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-
T ss_pred EEEEEeCeeEEEEECCEEeeCCc
Confidence 56777788999999999999854
No 124
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=42.72 E-value=1.6e+02 Score=33.81 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=64.7
Q ss_pred CCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCe----eecCC-ChhHHHHHHHHHHHH
Q 004219 96 PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRTD-NGPFKAAMHKFTEKI 170 (767)
Q Consensus 96 p~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~----~~Rt~-d~~y~~~~~~~~~~l 170 (767)
+..|.|||+....=+.|++.|++.|...++-+- | -.|.|+.+.-.. ...++ .+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS------N---SPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS------N---SPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE-------S---SS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee------c---CCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 567999999877777899999999999877641 2 368888753110 00111 234566777788888
Q ss_pred HHHHHhccccccCCCceEEeccccccCCccc-------CCC-cchHHHHHHHHHHHHhcCCCcceEEec
Q 004219 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEW-------DIG-APGKAYAKWAAQMAVGLNTGVPWVMCK 231 (767)
Q Consensus 171 ~~~l~~~~~~~~~gGpII~~QIENEyg~~~~-------~~~-~~~~~y~~~L~~~~~~~g~~vp~~~~~ 231 (767)
+++++.+ |=+|=-+-.=||...... .+. ....+.++.|...+++.|+..-+..|+
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 8877532 335555556688753210 011 123567888888888889876555544
No 125
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=42.59 E-value=35 Score=30.25 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=26.3
Q ss_pred cCCCceEEeccccc-cCCcccCC----C-cchHHHHHHHHHH---HHhcCCCcceEE
Q 004219 182 TQGGPIILSQIENE-FGPVEWDI----G-APGKAYAKWAAQM---AVGLNTGVPWVM 229 (767)
Q Consensus 182 ~~gGpII~~QIENE-yg~~~~~~----~-~~~~~y~~~L~~~---~~~~g~~vp~~~ 229 (767)
++...|.+|+|-|| -++....+ + .....+.+||+++ +|+.+.+.|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 45578999999999 55221101 1 1234566666665 567788888754
No 126
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=42.30 E-value=42 Score=37.03 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=48.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCC--ceecccch--hHHHHHHHHHHcCcEEEeecCcccc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRY--DLVRFIKLVQQAGLYVHLRIGPYVC 132 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G--~ydf~g~~--dL~~fl~la~~~GL~Vilr~GPyic 132 (767)
..+.-++.++++++.||-.=.+.+=|.... ..+ .|+|+-.+ |..++++..++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 555678899999999888655544444333 234 77666433 8999999999999999988767763
No 127
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.88 E-value=72 Score=26.42 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr 126 (767)
..++.++++|+.|+++|-+ .-|. ++. ...++.+++++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999988 4554 223 4568889999999988643
No 128
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=41.58 E-value=2.2e+02 Score=31.92 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=45.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----CCCCCC------CCCceeccc---chhHHHHHHHHHHcCcEEEee
Q 004219 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQGNYYFQD---RYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 65 ~~~~~W~d~l~kmKa~G~N~V~~yv~----Wn~hEp------~~G~ydf~g---~~dL~~fl~la~~~GL~Vilr 126 (767)
.+.+..++.|..|-...+|+...++- |.+--+ +.|.|.-.| ..|+.++++.|++.|+.||..
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 36788999999999999999998764 554322 123222111 249999999999999999976
No 129
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=40.96 E-value=75 Score=38.66 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=54.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-ee-----CC--CCCCCCCceec---------ccchhHHHHHHHHHHcCcEEEeecC
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTY-VF-----WN--GHEPTQGNYYF---------QDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~y-v~-----Wn--~hEp~~G~ydf---------~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
.+..|+ .++.+|+++|-+- ++ |. .-.-..|-||- .-..|++++++.|+++||+||+..=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 444554 7899999999863 33 33 22223466763 2347999999999999999997632
Q ss_pred --------cccccccCCCCCCeeec
Q 004219 129 --------PYVCAEWNYGGFPVWLK 145 (767)
Q Consensus 129 --------PyicaEw~~GGlP~WL~ 145 (767)
|+.-|+++.+-+|.|..
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 38888888888888883
No 130
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=40.95 E-value=56 Score=34.09 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
-..++|++|++.|-+ +|-|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 456799999999999 666655 5444 68999999999999999987
No 131
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=40.60 E-value=60 Score=34.69 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=39.0
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
-..++|++|++.|-+ +|-|. +--|.- .+.++.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii----GHSER-R~~f~E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVII----GHSER-RQYFGE-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEe----Ccccc-cCcCCC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 456799999999999 44444 433433 356888999999999999999997
No 132
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=40.59 E-value=47 Score=41.91 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 004219 107 YDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 107 ~dL~~fl~la~~~GL~Vilr~ 127 (767)
.++.++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999884
No 133
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=40.57 E-value=1.7e+02 Score=34.51 Aligned_cols=274 Identities=16% Similarity=0.258 Sum_probs=129.6
Q ss_pred EEEEEEEEEee------CCCCCcccHHHHHHHH---HHCCCCEEEEcee--------CCCCCCCCCcee---cccc----
Q 004219 51 QKRILISGSIH------YPRSTPEMWPDLIQKA---KDGGLDVIQTYVF--------WNGHEPTQGNYY---FQDR---- 106 (767)
Q Consensus 51 kp~~l~sG~~H------y~r~~~~~W~d~l~km---Ka~G~N~V~~yv~--------Wn~hEp~~G~yd---f~g~---- 106 (767)
+++.=+||++= ..+.+++.=++.|+.+ +.+|+|.+|+.|- +..-+ .|+.|+ |+-.
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 34555788773 2334544433334433 4589999998876 23222 233222 2211
Q ss_pred hhHHHHHHHHHHc--CcEEEeecCcccccccCCCCCCeeeccCCCe----eecC-CChhHHHHHHHHHHHHHHHHHhccc
Q 004219 107 YDLVRFIKLVQQA--GLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRT-DNGPFKAAMHKFTEKIVSMMKAEKL 179 (767)
Q Consensus 107 ~dL~~fl~la~~~--GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~----~~Rt-~d~~y~~~~~~~~~~l~~~l~~~~~ 179 (767)
..+.-+|+.|++. +|+++.-| |. .|+|+.....+ .++. ..+.|.++...|+.+-++.++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~---- 218 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYK---- 218 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHH----
Confidence 1234677777663 68888777 63 89999864332 2442 345787888888887777776
Q ss_pred cccCCCceEEeccccccCCc---ccCCCc------chHHHHH-HHHHHHHhcCC--CcceEEecCC--CCCC---ccccC
Q 004219 180 FQTQGGPIILSQIENEFGPV---EWDIGA------PGKAYAK-WAAQMAVGLNT--GVPWVMCKQD--DAPD---PVINT 242 (767)
Q Consensus 180 ~~~~gGpII~~QIENEyg~~---~~~~~~------~~~~y~~-~L~~~~~~~g~--~vp~~~~~~~--~~~~---~v~~~ 242 (767)
++|=+|=++-+.||.... ...+.. ..++|++ .|.-.+++.++ ++-++..+.. ..|. .++.-
T Consensus 219 --~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 219 --KEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp --CTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred --HCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 456699999999997631 011111 2355665 47778888876 7777665531 2221 11110
Q ss_pred ------CC--Cccc----------cccCCCCCCCCccccccccccccccCCCCCC---CChHHHHHHHHHHHHcCCeeee
Q 004219 243 ------CN--GFYC----------EKFVPNQNYKPKMWTEAWTGWFTEFGSAVPT---RPAEDLVFSVARFIQSGGSFIN 301 (767)
Q Consensus 243 ------~n--g~~~----------~~~~~~~p~~P~~~tE~~~GWf~~WG~~~~~---~~~~~~~~~~~~~l~~g~s~~n 301 (767)
+. +++| +......|++.++.||-..|.. .|+..... ..++..+..+..-+..+++ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 01 1222 1122457899999999876521 12211111 1123344444444566654 2
Q ss_pred eeee------ccCCCCCCCC-CCCcccccCCCCCCCcCCC-CCchhHHHHHHHHHHHH
Q 004219 302 YYMY------HGGTNFGRTS-GGFVATSYDYDAPIDEYGL-LNEPKWGHLRDLHKAIK 351 (767)
Q Consensus 302 ~YM~------hGGTNfG~~~-g~~~~TSYDYdApl~E~G~-~~t~Ky~~lr~l~~~i~ 351 (767)
+-++ .||-|++.-. .+..+. |- +.+. ..+|.|+.|..+.+|++
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iiv--d~-----~~~~~~~~p~yY~~gHfSKFV~ 424 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIV--DS-----DTGEFYKQPEYYAMGHFSKFVR 424 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEE--EG-----GGTEEEE-HHHHHHHHHHTTS-
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEE--Ec-----CCCeEEEcHHHHHHHHHhcccC
Confidence 2222 5888875321 111111 10 1121 23688999888776654
No 134
>PLN02877 alpha-amylase/limit dextrinase
Probab=40.18 E-value=54 Score=41.67 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 004219 107 YDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 107 ~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+++++++.|+++||.|||..
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999884
No 135
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=39.39 E-value=57 Score=35.02 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=35.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
-..++|++|++.|-+ + |..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii----G-HSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII----G-HSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe----C-cccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999999 4 44444444322 23444445559999999999997
No 136
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=39.32 E-value=58 Score=28.77 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=15.3
Q ss_pred ceEecCcccEEEEEECCEEe
Q 004219 503 LLTIWSAGHALQVFINGQLS 522 (767)
Q Consensus 503 ~L~i~~~~d~a~vfvng~~~ 522 (767)
.|++.+....++-||||+++
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPL 54 (89)
T ss_pred EEEEeCCCCcEEEEECCEEc
Confidence 45555445689999999999
No 137
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.97 E-value=96 Score=33.74 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee--CCCCC------CCCCceecccc--hhHHHHHHHHHHcCcEEEeecCccc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGHE------PTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 131 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~--Wn~hE------p~~G~ydf~g~--~dL~~fl~la~~~GL~Vilr~GPyi 131 (767)
+.+.-++.++++|+.||-+=-+++= |.... -.-+.|+|+-. -|..++++..++.|++|++.+=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5666788999999999986555442 43321 12346666543 3899999999999999998875543
No 138
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=38.59 E-value=33 Score=37.96 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcE--EE-eec
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VH-LRI 127 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~--Vi-lr~ 127 (767)
.|++.+.+++..|+ +|++.-+--..|..|+.| +|+.+.+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY-----KdVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESY-----KDVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhh-----hhHHHHhhhhhhcccchhhhcccc
Confidence 59999999999998 688888888999999888 5889999999999996 44 776
No 139
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=38.44 E-value=54 Score=36.57 Aligned_cols=73 Identities=11% Similarity=0.179 Sum_probs=53.2
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhH--HHHHHHHHHcCcEEEeecCcccc
Q 004219 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDL--VRFIKLVQQAGLYVHLRIGPYVC 132 (767)
Q Consensus 60 ~Hy~r~---~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dL--~~fl~la~~~GL~Vilr~GPyic 132 (767)
+|.+|. ..+..++.++++++.||..=.+.+=+.++. ..+.|+|+.. -|. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 466688999999999998655544333332 2467776653 377 99999999999999999888886
Q ss_pred c
Q 004219 133 A 133 (767)
Q Consensus 133 a 133 (767)
-
T Consensus 92 ~ 92 (339)
T cd06602 92 A 92 (339)
T ss_pred c
Confidence 4
No 140
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=37.41 E-value=36 Score=38.76 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=66.3
Q ss_pred ccceeEEEccCcEEECCEEEEEEEEEeeCCC-CCcccHHHHHHHHHHC-CCCEEEEceeCCCCCCCCCceecccchhHHH
Q 004219 34 FVKASVSYDHKAVIINGQKRILISGSIHYPR-STPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (767)
Q Consensus 34 ~~~~~v~~d~~~~~ldGkp~~l~sG~~Hy~r-~~~~~W~d~l~kmKa~-G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~ 111 (767)
.....|-.-+-+|-+.-.+-...+=|+.|+- .|.+.|+-+|..+.++ -=||+.+-| =|=+.|--++|+-. .|.+
T Consensus 148 ~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~---HL~k 223 (447)
T KOG0259|consen 148 NPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED---HLKK 223 (447)
T ss_pred CCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH---HHHH
Confidence 4444454444455555444444555665555 5888999999999987 778998844 47788888999888 9999
Q ss_pred HHHHHHHcCcEEEee
Q 004219 112 FIKLVQQAGLYVHLR 126 (767)
Q Consensus 112 fl~la~~~GL~Vilr 126 (767)
++++|+++|+.||..
T Consensus 224 iae~A~klgi~vIaD 238 (447)
T KOG0259|consen 224 IAETAKKLGIMVIAD 238 (447)
T ss_pred HHHHHHHhCCeEEeh
Confidence 999999999999865
No 141
>PRK14566 triosephosphate isomerase; Provisional
Probab=37.23 E-value=98 Score=33.54 Aligned_cols=75 Identities=16% Similarity=0.069 Sum_probs=46.6
Q ss_pred ECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 48 ldGkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
++|.++.+.+=.+|+.-.-+-.=+--..++|++|++.|-+ +|-| ++..|. +-+..+.+=++.|.++||.+|++.
T Consensus 62 ~~g~~i~v~AQnv~~~~~Ga~TGevS~~mL~d~G~~~vii----GHSE-RR~~f~-Etd~~v~~Kv~~al~~gl~pIvCv 135 (260)
T PRK14566 62 LDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVII----GHSE-RRRMYG-ETSNIVAEKFAAAQKHGLTPILCV 135 (260)
T ss_pred ccCceEEEEecccccccCCCccCccCHHHHHHcCCCEEEE----Cccc-ccCCCC-cCHHHHHHHHHHHHHCCCEEEEEc
Confidence 3454565443344542211111123356799999999998 4444 444443 234566778889999999999998
Q ss_pred C
Q 004219 128 G 128 (767)
Q Consensus 128 G 128 (767)
|
T Consensus 136 G 136 (260)
T PRK14566 136 G 136 (260)
T ss_pred C
Confidence 7
No 142
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.22 E-value=59 Score=35.81 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-----CCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-----TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp-----~~G~ydf~g~--~dL~~fl~la~~~GL~Vilr~GPyic 132 (767)
..+..++.++++|+.||-.=.+.+=+.++.. .-|.|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566789999999999876555443333331 2346666533 38999999999999999999877774
No 143
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=37.08 E-value=1.5e+02 Score=31.31 Aligned_cols=96 Identities=9% Similarity=0.034 Sum_probs=53.5
Q ss_pred CCceecc-cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHh
Q 004219 98 QGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (767)
Q Consensus 98 ~G~ydf~-g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 176 (767)
.|...+. ...++..+++.|++.|++|++..| .|..+.+-. + ..++. .-+++.+.+++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~~~~-~---------~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPEFTA-A---------LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCcchh-h---------hcCHH---HHHHHHHHHHHHHHH
Confidence 4565553 335788999999999999999986 222211100 1 12333 335678888888886
Q ss_pred ccccccCCCceEEeccccccCCcccCCCcchHHHHHHHHHHHHhcC
Q 004219 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN 222 (767)
Q Consensus 177 ~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~g 222 (767)
+++ =++.|+=|+.... ...-..+++.|++.+.+.+
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 543 2345555664321 0111235555555554433
No 144
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=36.88 E-value=48 Score=37.18 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=45.9
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 60 ~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
-++ |.+...-.-..+.+|++|.++|.+.|+|.-.++.+ -+-.-..+|.++.+.|+++||-+++.+
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 344 55544433346789999999999999999553310 011223489999999999999999875
No 145
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=36.53 E-value=72 Score=36.82 Aligned_cols=136 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhcccccccceeEEEccCcEEECCEEEEEEEEEeeCCC---CCcccHHHHHHHHHHCCCC----EEEEceeCCCCCCCCC
Q 004219 27 FCSWEISFVKASVSYDHKAVIINGQKRILISGSIHYPR---STPEMWPDLIQKAKDGGLD----VIQTYVFWNGHEPTQG 99 (767)
Q Consensus 27 ~~~~~~~~~~~~v~~d~~~~~ldGkp~~l~sG~~Hy~r---~~~~~W~d~l~kmKa~G~N----~V~~yv~Wn~hEp~~G 99 (767)
+++++++.+.--...-.+...+.+.-|+++.+.-+-++ +.++.-+.-.+.+++.|++ ++...-.-|+-.|.+.
T Consensus 132 ~iGaHvSiaGG~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e 211 (413)
T PTZ00372 132 YIGAHVSASGGVDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKE 211 (413)
T ss_pred eEEEEEeccccHHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHH
Q ss_pred ceecccchhHHHHHHHHHHcCcE-EEeecCcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhcc
Q 004219 100 NYYFQDRYDLVRFIKLVQQAGLY-VHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEK 178 (767)
Q Consensus 100 ~ydf~g~~dL~~fl~la~~~GL~-Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~ 178 (767)
.++++ ..-+.+-|+.|++.|.. |++.|| -........+.++++.+.|-+.++
T Consensus 212 ~rekS-v~~~~~eL~rA~~LGa~~VV~HPG-----------------------s~~~~~~~ee~i~~i~e~L~~~la--- 264 (413)
T PTZ00372 212 KREKS-YDAFLDDLQRCEQLGIKLYNFHPG-----------------------STVGQCSKEEGIKNIADCINKAHE--- 264 (413)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCCEEEECCC-----------------------cCCCCCCHHHHHHHHHHHHHHHHh---
Q ss_pred ccccCCCceEEecccc
Q 004219 179 LFQTQGGPIILSQIEN 194 (767)
Q Consensus 179 ~~~~~gGpII~~QIEN 194 (767)
...|..|++ ||
T Consensus 265 ---~~~gV~IlL--EN 275 (413)
T PTZ00372 265 ---ETKSVIIVL--EN 275 (413)
T ss_pred ---CcCCCEEEE--ec
No 146
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=36.45 E-value=49 Score=34.95 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCC----CceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~----G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.++|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 5567788999999999966 22232211 112111 1378999999999999999997
No 147
>PLN02784 alpha-amylase
Probab=36.11 E-value=82 Score=39.57 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCC---CCC-cee----cccchhHHHHHHHHHHcCcEEEeec
Q 004219 71 PDLIQKAKDGGLDVIQTYVFWNGHEP---TQG-NYY----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~yv~Wn~hEp---~~G-~yd----f~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+++..++++|+++|-+.=+.....+ .+. -|+ |....+|.++++.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 56788899999999988533222111 111 122 3335799999999999999999874
No 148
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=34.95 E-value=52 Score=37.67 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=39.8
Q ss_pred HHHHHHHHCCCCEEEE-ceeCC---CCCCCCCce-----ecccchhHHHHHHHHHHcCcEEEeec
Q 004219 72 DLIQKAKDGGLDVIQT-YVFWN---GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 72 d~l~kmKa~G~N~V~~-yv~Wn---~hEp~~G~y-----df~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
+.|.-+|++|+++|-+ +++=+ .|--..-.| .|....|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7899999999999964 23311 121111000 46677899999999999999999774
No 149
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=34.90 E-value=86 Score=31.81 Aligned_cols=89 Identities=16% Similarity=0.257 Sum_probs=55.4
Q ss_pred EEEEeeCCCCC-----cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceec--cc-chhHHHHHHHHHHcCcEEEeec
Q 004219 56 ISGSIHYPRST-----PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYF--QD-RYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 56 ~sG~~Hy~r~~-----~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf--~g-~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.-|.+||++.. .++.+.-++.++..+... ...|--.|..++.+.- +- ...+.+|++..+++|..+++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 33999998653 455777788888765432 1123344443343321 11 1478899999999999999998
Q ss_pred Ccccc----ccc---CCCCCCeeeccC
Q 004219 128 GPYVC----AEW---NYGGFPVWLKYV 147 (767)
Q Consensus 128 GPyic----aEw---~~GGlP~WL~~~ 147 (767)
+++-- +.. +...+|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 87521 111 145789999763
No 150
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.71 E-value=82 Score=34.70 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=46.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCC---CCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp---~~G~ydf~g~--~dL~~fl~la~~~GL~Vilr~GPyic 132 (767)
.+.-.+.++++++.+|-+=-+.+=+.+..- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 345678899999999986655443222211 1234565432 38999999999999999999888874
No 151
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.59 E-value=1.4e+02 Score=32.87 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee--CCCC---CC------------------------CCCceecccchhHHHHHHHH
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGH---EP------------------------TQGNYYFQDRYDLVRFIKLV 116 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~--Wn~h---Ep------------------------~~G~ydf~g~~dL~~fl~la 116 (767)
+.+..++.|+.|-..++|++...+- |.+- .| ..|.|.- .++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHHHHHHH
Confidence 7888999999999999999997544 3221 11 1223333 4999999999
Q ss_pred HHcCcEEEeec
Q 004219 117 QQAGLYVHLRI 127 (767)
Q Consensus 117 ~~~GL~Vilr~ 127 (767)
++.|+.||-.+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999998653
No 152
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=34.58 E-value=64 Score=35.88 Aligned_cols=68 Identities=6% Similarity=0.043 Sum_probs=50.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dL~~fl~la~~~GL~Vilr~GPyicaE 134 (767)
..+.-++.++++++.||..=.+.+=+.+ ....+.|+|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 4556788999999999986555433222 234566776543 3889999999999999999998888743
No 153
>PRK09267 flavodoxin FldA; Validated
Probab=33.69 E-value=3.3e+02 Score=26.68 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=49.2
Q ss_pred ECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 004219 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (767)
Q Consensus 48 ldGkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi 124 (767)
++.-..++++...|....++..|.+-+.+++...++-..+.+| .......-.-.| ..-+..+.+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 4455668899999987778889999999888877777777777 322111100112 2346677778888897655
No 154
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=33.54 E-value=61 Score=34.63 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCccccc
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi-lr~GPyica 133 (767)
+.-.+.++++|++|+ -|+.+| +|.+ +.++.|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 334678899999999 667644 6766 77999999999977 999999876
No 155
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=33.48 E-value=34 Score=41.78 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=46.8
Q ss_pred eEEEeCCcceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceeeeecCcccccCCCcEEEEEEecC
Q 004219 675 LALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWG 754 (767)
Q Consensus 675 ~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~PqqtlYhVP~~~Lk~g~N~ivvfE~~g 754 (767)
.+++++.|.+++-+.|+..|||||. .+ ++-..+ |++.|+++|.+..++++..|
T Consensus 540 ~~~~~~~~~~~v~~~~~~~l~~~~~----~~----------------------~~~~~~-v~~~~~~~g~~~~l~~~~~g 592 (673)
T COG1874 540 TTYGLKLWRATVDGEGGTVLARFRE----DG----------------------YAGGPA-VTRRWYGGGKAYYLGFRTSG 592 (673)
T ss_pred ceeccccceeeeeccCCeEEEEEec----cC----------------------cCCCcc-cchhhhcCcceeEEEeccCc
Confidence 4789999999999999999999996 36 788888 99999999999999987765
No 156
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=33.30 E-value=83 Score=34.41 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=47.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----CCCCCC----------------CCCceecccchhHHHHHHHHHHcCcEEE
Q 004219 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------TQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (767)
Q Consensus 65 ~~~~~W~d~l~kmKa~G~N~V~~yv~----Wn~hEp----------------~~G~ydf~g~~dL~~fl~la~~~GL~Vi 124 (767)
.+.+..++.|+.|-..++|++..++- |.+--+ ..|.|.-+ ++.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 37788899999999999999999887 754321 12344444 99999999999999998
Q ss_pred eec
Q 004219 125 LRI 127 (767)
Q Consensus 125 lr~ 127 (767)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 663
No 157
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=33.27 E-value=84 Score=34.76 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=40.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeC---CCCCCCCC--------ceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFW---NGHEPTQG--------NYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~W---n~hEp~~G--------~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+..-.++++.+|..|+|++-.=+== ++.=|... +=.|- |+.-||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 44556889999999999988642210 01111111 11233 99999999999999999995
No 158
>PRK09875 putative hydrolase; Provisional
Probab=33.21 E-value=2.3e+02 Score=31.21 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=46.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~ 146 (767)
.+.-...|+.+|++|.+||=- ..+ ..-.||...+.+++++-|+.||..+|-|.-.. +|.|+..
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMRETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHHHhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 344456788999999998732 222 12246999999999999999999999885332 6777763
No 159
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=33.07 E-value=71 Score=35.20 Aligned_cols=71 Identities=7% Similarity=0.113 Sum_probs=50.7
Q ss_pred eCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004219 61 HYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (767)
Q Consensus 61 Hy~r~---~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dL~~fl~la~~~GL~Vilr~GPyic 132 (767)
|..|. ..+..++.++++++.+|-.=.+.+=+.... ..+.|+|+-. -|..++++..++.|++|++..=|+|.
T Consensus 14 ~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 14 HISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 44453 556678999999999987555443322222 3456766543 38999999999999999998878775
No 160
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=32.18 E-value=1.4e+02 Score=36.17 Aligned_cols=108 Identities=12% Similarity=0.159 Sum_probs=72.8
Q ss_pred EEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcc
Q 004219 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (767)
Q Consensus 51 kp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPy 130 (767)
++-+.+++..|+.+.+.+.=-++|++-.++|...+-|=.+ ||-+ .+.+|++.+++.++.||..+-|-
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~----------fd~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPV----------YDEE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEeccc----------CCHH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4457888888877665554455677777899999999333 4444 78889999987788888777663
Q ss_pred --------cccccCCCCCCeeeccCCCeeec-CCC-hhHHHHHHHHHHHHHHHHH
Q 004219 131 --------VCAEWNYGGFPVWLKYVPGIEFR-TDN-GPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 131 --------icaEw~~GGlP~WL~~~p~~~~R-t~d-~~y~~~~~~~~~~l~~~l~ 175 (767)
+..+|..-=+|.|+.+. ++ ..| ...+++--++..++++.+.
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~----l~~~~d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRER----MRAVEDKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHH----HHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 22235445578888762 11 113 3566777777777777666
No 161
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=32.07 E-value=72 Score=34.24 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCCEEEEceeCCC---CCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 004219 71 PDLIQKAKDGGLDVIQTYVFWNG---HEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~yv~Wn~---hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vil 125 (767)
++.+++||++|++.|...+- .. ++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 67899999999999988644 11 11111223444 666788999999998653
No 162
>PRK15492 triosephosphate isomerase; Provisional
Probab=32.00 E-value=98 Score=33.48 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=37.9
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
-..++|++|++.|-+ + |..++-.|. +-+..+.+=++.|.++||.+|++.|
T Consensus 86 Sa~mLkd~G~~~vii----G-HSERR~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI----G-HSERRHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE----C-ccccccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999999 4 444444443 3345666788899999999999997
No 163
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=31.58 E-value=1.2e+02 Score=25.92 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=13.6
Q ss_pred CcccEEEEEECCEEe
Q 004219 508 SAGHALQVFINGQLS 522 (767)
Q Consensus 508 ~~~d~a~vfvng~~~ 522 (767)
...|.|-||++++++
T Consensus 25 k~~dsaEV~~g~Efi 39 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFI 39 (63)
T ss_pred CCCCceEEEeCCEEE
Confidence 457999999999999
No 164
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=31.39 E-value=2.2e+02 Score=31.75 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=53.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004219 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (767)
Q Consensus 60 ~Hy~r~---~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dL~~fl~la~~~GL~Vilr~GPyic 132 (767)
+|.+|. ..+..++.++++++.+|-.=.+++=|.++. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 566788999999999987655554454443 3466777643 37899999999999999998888887
No 165
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=31.11 E-value=1.6e+02 Score=34.15 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=56.5
Q ss_pred eCCCC--CcccHHHHHHHHHHCCCCEEEEc-eeCCCCCCCC----Cceecc-----cc-----hhHHHHHHHHH-HcCcE
Q 004219 61 HYPRS--TPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQ----GNYYFQ-----DR-----YDLVRFIKLVQ-QAGLY 122 (767)
Q Consensus 61 Hy~r~--~~~~W~d~l~kmKa~G~N~V~~y-v~Wn~hEp~~----G~ydf~-----g~-----~dL~~fl~la~-~~GL~ 122 (767)
+.+++ +-+.|+++|+.++++|.|+|..- +---....+| .+..|+ .. .+|.++++.++ ++||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 44443 55689999999999999999852 2111110011 122111 11 49999999985 69999
Q ss_pred EEeecCcccccccCCCCC-CeeeccCCCeeecCCChhHHHH
Q 004219 123 VHLRIGPYVCAEWNYGGF-PVWLKYVPGIEFRTDNGPFKAA 162 (767)
Q Consensus 123 Vilr~GPyicaEw~~GGl-P~WL~~~p~~~~Rt~d~~y~~~ 162 (767)
++... -|+.-.. =.||..+|+.-.=..+.++++.
T Consensus 93 ~~~Dv------V~NHtA~nS~Wl~eHPEagYN~~nsPHL~p 127 (423)
T PF14701_consen 93 SMTDV------VLNHTANNSPWLREHPEAGYNLENSPHLRP 127 (423)
T ss_pred EEEEE------eeccCcCCChHHHhCcccccCCCCCcchhh
Confidence 87554 2222221 3689988876443334455543
No 166
>PLN03059 beta-galactosidase; Provisional
Probab=30.99 E-value=1.6e+02 Score=37.08 Aligned_cols=41 Identities=29% Similarity=0.504 Sum_probs=31.2
Q ss_pred CCceEEEEEEECCCCC-------CCeEEEeCCc-ceEEEEECCeeccccc
Q 004219 657 QPMTWYKTTFNVPPGN-------DPLALDMGAM-GKGMVWINGQSIGRHW 698 (767)
Q Consensus 657 ~~~~~Yk~~F~lp~~~-------dp~~Ld~~g~-gKG~vwVNG~nlGRYW 698 (767)
.+-.||+++|+++... +| .|.+.+. -+.+|||||+-+|.-.
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~-~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYP-VLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCc-eEEEcccCcEEEEEECCEEEEEEE
Confidence 4678999999986542 23 4666554 5889999999999876
No 167
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=30.97 E-value=52 Score=27.60 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=16.1
Q ss_pred ceEecCcccEEEEEECCEEe
Q 004219 503 LLTIWSAGHALQVFINGQLS 522 (767)
Q Consensus 503 ~L~i~~~~d~a~vfvng~~~ 522 (767)
.|.|...-..|.|||||+++
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~ 22 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYI 22 (71)
T ss_pred EEEEEEECCCCEEEECCEEe
Confidence 46666655788999999999
No 168
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=30.83 E-value=78 Score=38.94 Aligned_cols=55 Identities=27% Similarity=0.370 Sum_probs=40.5
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCCCCC---C-----------------ceeccc-----chhHHHHHHHHHHcCcEEEee
Q 004219 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-----------------NYYFQD-----RYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~-yv~Wn~hEp~~---G-----------------~ydf~g-----~~dL~~fl~la~~~GL~Vilr 126 (767)
.|.-+|++|+++|+. +|+.-..|+.. | .|--+. .+.+..+++.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 499999999999996 57755544433 2 222222 257889999999999999998
Q ss_pred c
Q 004219 127 I 127 (767)
Q Consensus 127 ~ 127 (767)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 5
No 169
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=30.55 E-value=55 Score=32.31 Aligned_cols=63 Identities=17% Similarity=0.086 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeC-CCCCCCC--CceecccchhHHHHHHHHHHcCcEEEeecCcc
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFW-NGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~W-n~hEp~~--G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPy 130 (767)
.+..++.++.++++|+..|.+...+ +.+.+.. ..++. -...|.++.+.|+++|+.+.+.+-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWER-LAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHH-HHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHH-HHHHHHHHHhhhhhhcceEEEecccC
Confidence 3567888999999999998886442 1121111 11111 12478899999999999999998653
No 170
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=30.13 E-value=1.4e+02 Score=32.06 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=57.4
Q ss_pred eeEEEccCcEEECCEEEEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc--cchhHHHHH
Q 004219 37 ASVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLVRFI 113 (767)
Q Consensus 37 ~~v~~d~~~~~ldGkp~~l~sG~~Hy~r~-~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~--g~~dL~~fl 113 (767)
..|.+. .+.+.+..++++.| +-.+ ..+.-.+..+.+|+.|....+.|++=+.-.| |.|. |..-|..+-
T Consensus 12 s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~ 82 (260)
T TIGR01361 12 TVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLR 82 (260)
T ss_pred CEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHH
Confidence 335553 35566555666777 3333 4555677888999999998888888744443 4455 456788888
Q ss_pred HHHHHcCcEEEeec
Q 004219 114 KLVQQAGLYVHLRI 127 (767)
Q Consensus 114 ~la~~~GL~Vilr~ 127 (767)
+.|++.||.++-.|
T Consensus 83 ~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 83 RAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHhCCCEEEee
Confidence 89999999998876
No 171
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=29.94 E-value=69 Score=34.15 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccc
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAE 134 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi-lr~GPyicaE 134 (767)
+.-.+.++++|++|+- |+. +.+|.+ +.++.|++.|-..| |-+|||..+-
T Consensus 110 ~~l~~~i~~l~~~gI~-VSL-----FiDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a~ 159 (234)
T cd00003 110 EKLKPIIERLKDAGIR-VSL-----FIDPDP------------EQIEAAKEVGADRVELHTGPYANAY 159 (234)
T ss_pred HHHHHHHHHHHHCCCE-EEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcCC
Confidence 4457788999999994 777 456766 77899999999977 9999998643
No 172
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=29.65 E-value=2.9e+02 Score=25.81 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=23.9
Q ss_pred eEEEEEEecCCCCcccccCCCCCceEecCcccEEEEEECCEEe
Q 004219 480 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLS 522 (767)
Q Consensus 480 yllYrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~ 522 (767)
.+.|++.|..+.+.. -++.+. ..|.+.+||||+.+
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~v 81 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLV 81 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEE
Confidence 467888887544332 133443 56899999999998
No 173
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=29.62 E-value=36 Score=37.61 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=41.7
Q ss_pred EEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eec
Q 004219 52 KRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRI 127 (767)
Q Consensus 52 p~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi-lr~ 127 (767)
..++++-+..--+.| +.|++.+..+-++|+|.|+- +|+.-. |..+|.++|+++|..++ +|.
T Consensus 34 ~~liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 34 DTLIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp SEEEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred CEEEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 344555555544444 78999999999999999997 787544 67799999999999877 664
No 174
>PRK14567 triosephosphate isomerase; Provisional
Probab=29.54 E-value=1.1e+02 Score=32.87 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=37.7
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
-..++|++|++.|-+ +|-| ++-.|. +-+..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~yvii----GHSE-RR~~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 77 SARMLEDIGCDYLLI----GHSE-RRSLFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred CHHHHHHcCCCEEEE----Cccc-ccCccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 346799999999999 4444 444443 3345677778899999999999997
No 175
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.36 E-value=82 Score=33.33 Aligned_cols=59 Identities=19% Similarity=0.068 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCC-CceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~-G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
+.+++.++.++++|++.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4467889999999999998631100001111 01110 12468889999999999999987
No 176
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=29.10 E-value=1.8e+02 Score=31.78 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceeccc--chhHHHHHHHHHHcCcEEEeec
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g--~~dL~~fl~la~~~GL~Vilr~ 127 (767)
..++-...-+..|++|.+.++- ...-|+---|+|.| ..-|...-+.++++||.|+-+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe
Confidence 4566777889999999999999 55567777799996 4667777778888999999886
No 177
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.86 E-value=1.1e+02 Score=34.10 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=49.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEce----------eCCCCCCC---------CCceeccc---chhHHHHHH
Q 004219 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEPT---------QGNYYFQD---RYDLVRFIK 114 (767)
Q Consensus 60 ~Hy~r~---~~~~W~d~l~kmKa~G~N~V~~yv----------~Wn~hEp~---------~G~ydf~g---~~dL~~fl~ 114 (767)
+|..|. ..+.-++.++++++.||..=-+++ .|+...-. -+.++|.. --|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455553 456678899999999997655543 34432211 13333431 127999999
Q ss_pred HHHHcCcEEEeecCcccc
Q 004219 115 LVQQAGLYVHLRIGPYVC 132 (767)
Q Consensus 115 la~~~GL~Vilr~GPyic 132 (767)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 178
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=28.85 E-value=26 Score=31.04 Aligned_cols=38 Identities=24% Similarity=0.518 Sum_probs=26.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcC
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAG 120 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~G 120 (767)
....|-.-+|.+-. .||.|-.|||. +|.+||++|-|--
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTp 57 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTP 57 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCC
Confidence 34557777766543 58999999999 9999999998743
No 179
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=28.69 E-value=1.2e+02 Score=33.04 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=43.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC--CCC--ceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--TQG--NYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp--~~G--~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++ .++- ..+.+++++|+++|+.|.+..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 3677889999999999999999875432111 112 2332 378899999999999988775
No 180
>PLN02561 triosephosphate isomerase
Probab=28.59 E-value=1.2e+02 Score=32.71 Aligned_cols=50 Identities=12% Similarity=-0.015 Sum_probs=38.3
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
-..++|++|++.|-+ +|-| ++..|.= -+..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii----GHSE-RR~~f~E-td~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL----GHSE-RRALLGE-SNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE----Cccc-ccCccCC-ChHHHHHHHHHHHHCcCEEEEEcC
Confidence 456899999999999 4444 4444432 245777788899999999999997
No 181
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=28.39 E-value=1.5e+02 Score=32.45 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=67.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceeccc---chhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCe
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD---RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g---~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~ 142 (767)
.-+.-++-+..+.++|+..|-+=.-|...+ ....+||+. ..||.++++-|++.|..|+|+. -|+.+|-..
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~------~~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY------HSETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE------ECCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE------eCCcchhhH
Confidence 455678889999999999999877787622 234667653 4699999999999999888885 233322110
Q ss_pred eecc-------------CCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 004219 143 WLKY-------------VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (767)
Q Consensus 143 WL~~-------------~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 187 (767)
=|.+ ..++++=.-+. --+.+-+|+++|++.-++++++..=+|++
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 0111 12222211111 12466788999999999888766556554
No 182
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=28.33 E-value=1.1e+02 Score=35.15 Aligned_cols=68 Identities=15% Similarity=0.326 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dL~~fl~la~~~GL~Vilr~GPyicaE 134 (767)
..+...+.++.+|+.|+-.=...+-..... ..+.|.|+.. -|..++++.+++.|+++++..-|+|+-+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 456678999999999998666654433222 4445555432 3899999999999999999988887654
No 183
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=28.10 E-value=83 Score=33.13 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
+..++.++.++++|..+|.+...+......+.+..-.-...|.++.++|+++|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788899999999999774332111111111111112467888899999999999997
No 184
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=28.00 E-value=3.8e+02 Score=26.84 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhccccccCCCceEEeccccccCCcccCCCcchHHHHHHHHHHH
Q 004219 163 MHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMA 218 (767)
Q Consensus 163 ~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~ 218 (767)
+.+-+.+++..++ ..+.++|.+. ||.|+-.-++++..+.|.+.|-.+-
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viVs--nEvG~g~vp~~~~~r~f~d~lG~ln 148 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILVS--NEVGLGVVPENALGRRFRDELGRLN 148 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEEE--CCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3344555666666 3456888874 9998643334566788988665543
No 185
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=27.83 E-value=1.2e+02 Score=34.13 Aligned_cols=104 Identities=21% Similarity=0.377 Sum_probs=60.8
Q ss_pred EEEEceeCCCCC---CCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeeecCCChhHH
Q 004219 84 VIQTYVFWNGHE---PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFK 160 (767)
Q Consensus 84 ~V~~yv~Wn~hE---p~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~ 160 (767)
.|.+.|+|+++- |.+ ..++.|+++|+.|+--. .=||+ +-+.|+.. + ++ +++
T Consensus 32 yvD~fvywsh~~~~iPp~------------~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~-~~~--- 85 (339)
T cd06547 32 YVDTFVYFSHSAVTIPPA------------DWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LK-KDE--- 85 (339)
T ss_pred hhheeecccCccccCCCc------------HHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hc-cCc---
Confidence 478889999854 333 66899999999997422 22565 33455542 0 11 111
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCcccCCCcchHHHHHHHHHHHHhc
Q 004219 161 AAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL 221 (767)
Q Consensus 161 ~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~ 221 (767)
+...++.++|+++.+.+.+ .| +.+-+||..+... ....-.+|++.|++.+++.
T Consensus 86 ~~~~~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~ 138 (339)
T cd06547 86 DGSFPVADKLVEVAKYYGF----DG--WLINIETELGDAE--KAKRLIAFLRYLKAKLHEN 138 (339)
T ss_pred ccchHHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhc
Confidence 1235667788887774433 34 7777888773110 0112345777777777664
No 186
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=27.67 E-value=4.4e+02 Score=30.09 Aligned_cols=85 Identities=13% Similarity=0.203 Sum_probs=49.3
Q ss_pred HHHcCcEEEeecCcccccccCCCCCCeeeccCCCe------eec-CCChhHHHHHHHHHHHHHHHHHhccccccCCCceE
Q 004219 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI------EFR-TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (767)
Q Consensus 116 a~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~------~~R-t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII 188 (767)
+-..|+.|+.-| | -.|+|+...-.+ ++| ...+.|.++..+|+..+ + .+|=|+-
T Consensus 111 ~in~g~ivfASP-------W---spPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~m----~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------W---SPPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLEM----K------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------C---CCchhhhhccCcCCccccccchhHhHHHHHHHHHHHHHH----H------hCCCcee
Confidence 556899999887 6 389999863211 333 33455555544444322 3 5677999
Q ss_pred EeccccccCCcccCCCcc---hHHHHHHHHHHHHhc
Q 004219 189 LSQIENEFGPVEWDIGAP---GKAYAKWAAQMAVGL 221 (767)
Q Consensus 189 ~~QIENEyg~~~~~~~~~---~~~y~~~L~~~~~~~ 221 (767)
+..|.||..... .|+.| ..+.++.+++-++..
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si 205 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASI 205 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhh
Confidence 999999976321 12222 244555555555433
No 187
>PRK14565 triosephosphate isomerase; Provisional
Probab=27.66 E-value=1.2e+02 Score=32.39 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=35.0
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
-.+++|++|++.|-+ +|-|.+. .|+=+ +..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~~vii----GHSERR~-~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL----GHSERRS-TFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-cCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999998 5555443 33222 22333334899999999999998
No 188
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=27.49 E-value=3e+02 Score=31.24 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=56.5
Q ss_pred eEEEccCcEEECCEEEEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceeccc--chhHHHHHH
Q 004219 38 SVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFIK 114 (767)
Q Consensus 38 ~v~~d~~~~~ldGkp~~l~sG~~Hy~r~-~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g--~~dL~~fl~ 114 (767)
.|.+ ..+.+.|....++.|.. -+ ..+.-.+..+.+|+.|+..++-+.|= |+.--|.|.| ...+..+-+
T Consensus 106 ~~~~--~~~~~g~~~~~~iaGpc---~iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~~ 176 (360)
T PRK12595 106 IVDV--KGEVIGDGNQSFIFGPC---SVESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILKQ 176 (360)
T ss_pred EEEE--CCEEecCCCeeeEEecc---cccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHHH
Confidence 3444 34666655444566752 11 35566778888999999999976554 4444466765 468889999
Q ss_pred HHHHcCcEEEeec
Q 004219 115 LVQQAGLYVHLRI 127 (767)
Q Consensus 115 la~~~GL~Vilr~ 127 (767)
.|++.||.++-.|
T Consensus 177 ~~~~~Gl~~~t~v 189 (360)
T PRK12595 177 VADEYGLAVISEI 189 (360)
T ss_pred HHHHcCCCEEEee
Confidence 9999999998886
No 189
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=27.40 E-value=1e+02 Score=34.16 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=50.3
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004219 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (767)
Q Consensus 60 ~Hy~r~---~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dL~~fl~la~~~GL~Vilr~GPyic 132 (767)
+|..|. ..+..++.++++++.||-.=.+.+=+.+.. .-+.|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 344453 455678999999999987644433333222 3445666533 37899999999999999998878875
No 190
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=27.06 E-value=3.7e+02 Score=28.08 Aligned_cols=90 Identities=8% Similarity=0.071 Sum_probs=63.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc-cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCee
Q 004219 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVW 143 (767)
Q Consensus 65 ~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~-g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~W 143 (767)
..+..++..++.++++|+..+-+|..... ....|..+ |..|=..-+.+|+++|+ -+ |-|-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~-----------gs~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PP-----------GTIIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CC-----------CCEEE
Confidence 35788999999999999999999988765 22233332 67889999999999998 23 33444
Q ss_pred eccCCCeeecCCChhHHHHHHHHHHHHHHHHHh
Q 004219 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (767)
Q Consensus 144 L~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 176 (767)
+.-+.+. .+..+...+..|++.+.+.|..
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~ 139 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHE 139 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHh
Confidence 4333222 3334677888888888888874
No 191
>PLN02429 triosephosphate isomerase
Probab=27.05 E-value=1.2e+02 Score=33.80 Aligned_cols=50 Identities=18% Similarity=0.040 Sum_probs=33.7
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
-..++|++|++.|-+ +|-|. +-.|.=+ +..+.+=+..|.++||.+|++.|
T Consensus 139 Sa~mLkd~Gv~~Vii----GHSER-R~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL----GHSER-RHVIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe----Ccccc-CCCCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 456799999999999 55554 4344322 22233333449999999999997
No 192
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=26.97 E-value=2.6e+02 Score=31.16 Aligned_cols=122 Identities=18% Similarity=0.170 Sum_probs=72.1
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCe
Q 004219 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI 150 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~GPyicaEw~~GGlP~WL~~~p~~ 150 (767)
...+...++.|.+||=. +.+ =.--||..++.+.+++.||.+|...|.|.-+.|+ .|+...|
T Consensus 51 ~~e~~~~~a~Gg~TIVD--------~T~----~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~-- 111 (316)
T COG1735 51 IAELKRLMARGGQTIVD--------ATN----IGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP-- 111 (316)
T ss_pred HHHHHHHHHcCCCeEee--------CCc----cccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC--
Confidence 34577777889998854 111 0113689999999999999999999999988864 6665433
Q ss_pred eecCCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCcccCCCcchHHHHHHHHHHHHhc-CCCcceEE
Q 004219 151 EFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVM 229 (767)
Q Consensus 151 ~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~-g~~vp~~~ 229 (767)
++.+.+.+.+.++. +=.|+=|..=|=-|-|.+.. -.+.=.+-|+..++.. .+++|+.+
T Consensus 112 ------------i~~~ae~~v~ei~~-----Gi~gT~ikAGiIk~~~~~~~----iTp~Eek~lrAaA~A~~~Tg~Pi~t 170 (316)
T COG1735 112 ------------IEELAEFVVKEIEE-----GIAGTGIKAGIIKEAGGSPA----ITPLEEKSLRAAARAHKETGAPIST 170 (316)
T ss_pred ------------HHHHHHHHHHHHHh-----cccCCccccceeeeccCccc----CCHHHHHHHHHHHHHhhhcCCCeEE
Confidence 34444445555541 11133333333345554321 1222334455555543 45789877
Q ss_pred ecC
Q 004219 230 CKQ 232 (767)
Q Consensus 230 ~~~ 232 (767)
.++
T Consensus 171 Ht~ 173 (316)
T COG1735 171 HTP 173 (316)
T ss_pred ecc
Confidence 554
No 193
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=26.79 E-value=88 Score=33.40 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=32.3
Q ss_pred EECCEEEEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEE
Q 004219 47 IINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQ 86 (767)
Q Consensus 47 ~ldGkp~~l~sG~~Hy~r~-~~~~W~d~l~kmKa~G~N~V~ 86 (767)
.+.|+++..+.|..|+..- ...+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 4679999999999997654 444457889999999998764
No 194
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=26.73 E-value=65 Score=39.45 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=37.6
Q ss_pred HHHHHHHHHCCCCEEEEc-e--------eCCCCCC---C-CCceecc----cchhHHHHHHHHHHcCcEEEeec
Q 004219 71 PDLIQKAKDGGLDVIQTY-V--------FWNGHEP---T-QGNYYFQ----DRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~y-v--------~Wn~hEp---~-~G~ydf~----g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
+++|..+|.+|+|+|+.- | .|..+-- . -++|--. -..++.+++|.|++.||.|+|..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 455999999999999963 2 2433221 0 0111110 02489999999999999999885
No 195
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=26.48 E-value=1.4e+02 Score=34.74 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=45.9
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 60 ~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.-|.+.|.+.-++.++++.+.|+..|+++++-|.. +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 34666777888899999999999999998876654 268899999999999886554
No 196
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.08 E-value=2.6e+02 Score=31.34 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=45.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----CCCCC----------------------------CCCCceecccchhHHHH
Q 004219 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE----------------------------PTQGNYYFQDRYDLVRF 112 (767)
Q Consensus 65 ~~~~~W~d~l~kmKa~G~N~V~~yv~----Wn~hE----------------------------p~~G~ydf~g~~dL~~f 112 (767)
.+.+..++.|..|...++|+...++. |.+-- +..|.|.- .|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHH
Confidence 36888999999999999999998764 43211 11234443 499999
Q ss_pred HHHHHHcCcEEEeec
Q 004219 113 IKLVQQAGLYVHLRI 127 (767)
Q Consensus 113 l~la~~~GL~Vilr~ 127 (767)
++.|++.|+.||-.+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999663
No 197
>PTZ00333 triosephosphate isomerase; Provisional
Probab=26.05 E-value=1.4e+02 Score=32.11 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
-..++|++|++.|-+ + |..++-.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 81 S~~mL~d~G~~~vii----G-HSERR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 81 SAEMLKDLGINWTIL----G-HSERRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred CHHHHHHcCCCEEEE----C-cccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 346899999999999 4 444444442 3356888889999999999999997
No 198
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=25.92 E-value=91 Score=32.60 Aligned_cols=60 Identities=12% Similarity=-0.079 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
+.+++.++.++++|..+|.+...+.--++..-+..-.-...|.++.+.|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 567788999999999999863221100000000000112467888999999999999987
No 199
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.25 E-value=27 Score=35.69 Aligned_cols=68 Identities=25% Similarity=0.422 Sum_probs=43.9
Q ss_pred EEEEEEEeeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 004219 53 RILISGSIHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 53 ~~l~sG~~Hy~r~---~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr 126 (767)
...-+|--.|.|+ .|-.-+ +-..++|++.+-+=. ...--.--|||-...+|.+|+++|+++||.+-|.
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDT---aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDT---AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEEec---ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3445665566674 333333 246678888654300 1122234599988889999999999999988665
No 200
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=24.83 E-value=1.2e+02 Score=34.99 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=47.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE-EeecCcccccccCCCCCC
Q 004219 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIGPYVCAEWNYGGFP 141 (767)
Q Consensus 65 ~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~V-ilr~GPyicaEw~~GGlP 141 (767)
...+.-+..|+.+|+.|+|.|=++++=.---+.+-.|.- -..|-+.+++++.+.|..+ +|..| ||+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 345567889999999999999997654433233333322 2357778889999999985 68886 7876
No 201
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.81 E-value=4.2e+02 Score=30.07 Aligned_cols=82 Identities=17% Similarity=0.234 Sum_probs=57.9
Q ss_pred EEEcc--CcEEECC-EEEEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceeccc--chhHHHH
Q 004219 39 VSYDH--KAVIING-QKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRF 112 (767)
Q Consensus 39 v~~d~--~~~~ldG-kp~~l~sG~~Hy~r~-~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g--~~dL~~f 112 (767)
+.++. ....+.| +|++++.| +--+ .++.-.+.-+.+|++|...++-+.|= |+---|.|.| ..-|.-+
T Consensus 85 v~v~~~~~~v~iGg~~~l~vIAG---PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g~~gl~~L 157 (352)
T PRK13396 85 VVVPTPNGPVPFGENHPVVVVAG---PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHGESALELL 157 (352)
T ss_pred EEEecCcCCeEecCCCeEEEEEe---CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCchHHHHHHH
Confidence 54542 3455554 66888888 3333 56777888899999999999987665 4444477775 3556666
Q ss_pred HHHHHHcCcEEEeec
Q 004219 113 IKLVQQAGLYVHLRI 127 (767)
Q Consensus 113 l~la~~~GL~Vilr~ 127 (767)
-+.+++.||.++-.+
T Consensus 158 ~~~~~e~Gl~~~tev 172 (352)
T PRK13396 158 AAAREATGLGIITEV 172 (352)
T ss_pred HHHHHHcCCcEEEee
Confidence 677889999998776
No 202
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=24.66 E-value=98 Score=33.08 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccc
Q 004219 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAE 134 (767)
Q Consensus 68 ~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi-lr~GPyicaE 134 (767)
+.-.+.++++|+.|+ -|+. +.+|.+ +.++.|++.|-..| |-+|||..+.
T Consensus 110 ~~l~~~i~~l~~~gI-~VSL-----FiDP~~------------~qi~~A~~~GAd~VELhTG~YA~a~ 159 (237)
T TIGR00559 110 DKLCELVKRFHAAGI-EVSL-----FIDADK------------DQISAAAEVGADRIEIHTGPYANAY 159 (237)
T ss_pred HHHHHHHHHHHHCCC-EEEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcCC
Confidence 345677888999998 4555 266666 77889999999877 9999998643
No 203
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=24.60 E-value=2.9e+02 Score=29.75 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=66.5
Q ss_pred EEEEEEEeeCCCCCccc----HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE--Eee
Q 004219 53 RILISGSIHYPRSTPEM----WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLR 126 (767)
Q Consensus 53 ~~l~sG~~Hy~r~~~~~----W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~V--ilr 126 (767)
.+.+++..|+.+.|... =.++|++-.++|.+.+-| .=.||.+ .+.+|++.|++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iT----------Q~~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAIT----------QLFFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEee----------ccccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 46788888877654332 234566667899998888 2245555 7889999999997654 444
Q ss_pred cCcccc-------cccCCCCCCeeeccCCCeeec--CCC-hhHHHHHHHHHHHHHHHHH
Q 004219 127 IGPYVC-------AEWNYGGFPVWLKYVPGIEFR--TDN-GPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 127 ~GPyic-------aEw~~GGlP~WL~~~p~~~~R--t~d-~~y~~~~~~~~~~l~~~l~ 175 (767)
.-|-.. .+|..-.+|.|+.+. +. .++ ...+++--++..+++..+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~----l~~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKR----LEKYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444222 235666688888752 11 123 3455566666666666665
No 204
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=24.49 E-value=1e+02 Score=33.87 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=41.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee----CCCCCC------CCC---------ceecccchhHHHHHHHHHHcCcEEEee
Q 004219 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQG---------NYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 66 ~~~~W~d~l~kmKa~G~N~V~~yv~----Wn~hEp------~~G---------~ydf~g~~dL~~fl~la~~~GL~Vilr 126 (767)
+.+.-++.|..|-..++|++..++- |.+.-+ ..| .|.- .|+.++++.|++.||.||-.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 6778899999999999999998875 433211 122 3333 49999999999999999855
No 205
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.31 E-value=1.3e+02 Score=23.99 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE
Q 004219 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (767)
Q Consensus 67 ~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~V 123 (767)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44557788889999999998875 3333234455555433 4889999999999765
No 206
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.92 E-value=1.9e+02 Score=31.30 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 004219 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 65 ~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr 126 (767)
.|.+.-++++++..+.|+..|+++++.+. + ..+...++.|+++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEEE
Confidence 45556788999999999999999887665 2 37889999999999987753
No 207
>PLN02231 alanine transaminase
Probab=23.55 E-value=2.5e+02 Score=33.47 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=44.7
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 004219 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 63 ~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr 126 (767)
+.+..+..++.++..+..|+++--+++. |-|.|.=-.++-+ .+.+++++|+++|++||..
T Consensus 251 ~~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 251 WGLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 3455666666666666667666445555 7788887777766 8999999999999998865
No 208
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=23.54 E-value=68 Score=31.12 Aligned_cols=59 Identities=27% Similarity=0.443 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHcCcEEEeecCcccccccC-CCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHHhccccccCCC
Q 004219 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWN-YGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGG 185 (767)
Q Consensus 107 ~dL~~fl~la~~~GL~Vilr~GPyicaEw~-~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gG 185 (767)
.||..||+.|++.|+.|++=.-| +++.|- .-|+| .+.-++++++|-.+++ ++|-
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~------~~gf 90 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLK------SQGF 90 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHH------TTT-
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHH------HCCC
Confidence 49999999999999998765544 566662 11111 2445667788877777 3455
Q ss_pred ceEEe
Q 004219 186 PIILS 190 (767)
Q Consensus 186 pII~~ 190 (767)
.|+=.
T Consensus 91 ~v~D~ 95 (130)
T PF04914_consen 91 NVADF 95 (130)
T ss_dssp -EEE-
T ss_pred EEEec
Confidence 55544
No 209
>PLN02389 biotin synthase
Probab=23.35 E-value=1.1e+02 Score=34.72 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCce-------ecccchhHHHHHHHHHHcCcEEE
Q 004219 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-------YFQDRYDLVRFIKLVQQAGLYVH 124 (767)
Q Consensus 70 W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~y-------df~g~~dL~~fl~la~~~GL~Vi 124 (767)
=++.+++||++|++.+.. ++ |..|..| +|+ +..+.++.|++.||.|-
T Consensus 177 ~~E~l~~LkeAGld~~~~----~L-eTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNH----NL-DTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEe----ee-cCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 478999999999998876 32 3222222 444 66688999999999873
No 210
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=23.34 E-value=2e+02 Score=31.62 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=56.2
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCc--EEEeecCc--------ccccccCCCCCCe
Q 004219 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGL--YVHLRIGP--------YVCAEWNYGGFPV 142 (767)
Q Consensus 73 ~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL--~Vilr~GP--------yicaEw~~GGlP~ 142 (767)
.|++-.++|.+.+-|= =.||.+ .+.+|++.|++.|+ .|+..+-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ----------~~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQ----------FFFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecc----------cccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 4555557898888872 235555 88999999999994 45555555 34 5666778999
Q ss_pred eeccCCCeeecCCC-hhHHHHHHHHHHHHHHHHH
Q 004219 143 WLKYVPGIEFRTDN-GPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 143 WL~~~p~~~~Rt~d-~~y~~~~~~~~~~l~~~l~ 175 (767)
|+.+.=+ +. .+| ...+++--++..++++.+.
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~ 265 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILS 265 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9976210 01 133 3355566667777777766
No 211
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.23 E-value=6.3e+02 Score=27.02 Aligned_cols=84 Identities=10% Similarity=0.066 Sum_probs=51.8
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE--EeecCcccccccCCCCCCeeeccC
Q 004219 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLKYV 147 (767)
Q Consensus 70 W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~V--ilr~GPyicaEw~~GGlP~WL~~~ 147 (767)
-.+.++.+++.|+++|+.++-. |+--....-...+..+|-+.++++++.+ +.-=+||.
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~---------------- 72 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL---------------- 72 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee----------------
Confidence 3568999999999999996542 2111111112236778888899998863 33334543
Q ss_pred CCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 148 p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
+.+=+.|+..++..-+.+++.++.-+
T Consensus 73 --iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 --INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred --eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334567777776666666666555
No 212
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.93 E-value=1.7e+02 Score=31.52 Aligned_cols=72 Identities=17% Similarity=0.061 Sum_probs=44.7
Q ss_pred CEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 50 GQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 50 Gkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
| ++.+..=.+|+...-.-.=+--..++|++|++.|-+ +|-|.+. .|+=+ ...+.+=++.|.++||.+||+.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii----GHSERR~-~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI----GHSERRL-YFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE----Ccccccc-ccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 6 444444445543221111122345799999999998 5555443 33222 33566788999999999999987
No 213
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=22.63 E-value=62 Score=34.59 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 004219 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~G 128 (767)
+--..++|++|++.|-+ +|-|.+ -.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 74 evS~~mL~d~G~~~vii----GHSERR-~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 74 EVSAEMLKDLGCKYVII----GHSERR-QYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHBHHHHHHTTESEEEE----SCHHHH-HHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HhHHHHHHHhhCCEEEe----cccccc-Cccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 44567899999999998 444433 2332 3456888999999999999999987
No 214
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=22.03 E-value=1.7e+02 Score=29.87 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=39.3
Q ss_pred HHHHHHHCCCCEEE-----EceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 004219 73 LIQKAKDGGLDVIQ-----TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 73 ~l~kmKa~G~N~V~-----~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr 126 (767)
....+++.|+.+|= |-|+|.--+..| .+.+.++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35679999999885 679999999999 8999999999999998764
No 215
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.84 E-value=92 Score=33.81 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=46.5
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 64 r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
|.|.-.=.=.-+++|+.|-++|-.-|+|-.-||+- +-....-+++|...|..+||..+|.|
T Consensus 107 rlp~l~~~isa~riK~~G~~avK~Lvy~~~D~~e~---neqk~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 107 RLPDLLRKISAKRIKEDGGDAVKFLVYYRSDEDEI---NEQKLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred cchhhhhhhCHHHHHHhcccceEEEEEEcCCchHH---hHHHHHHHHHHHHHhhhcCCceeEee
Confidence 44433323346789999999999999999999832 22223468999999999999999998
No 216
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=21.69 E-value=1.5e+02 Score=30.80 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=44.8
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCcee-cccchhHHHHHHHHH--HcCcEEEeecCcccccccCCC
Q 004219 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYY-FQDRYDLVRFIKLVQ--QAGLYVHLRIGPYVCAEWNYG 138 (767)
Q Consensus 62 y~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~yd-f~g~~dL~~fl~la~--~~GL~Vilr~GPyicaEw~~G 138 (767)
+.++..+|--...+.+|+.||.++-.--.=..|....=-|- -.| .++ +-.. +..=++|+||||..|- ...-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG--EvE---~~v~eL~F~~~~i~RPG~ll~~-R~es 176 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG--EVE---RDVIELDFKHIIILRPGPLLGE-RTES 176 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc--hhh---hhhhhccccEEEEecCcceecc-cccc
Confidence 45788899888999999999988765333333333331121 112 111 1122 3345689999998775 2222
Q ss_pred CCCeeecc
Q 004219 139 GFPVWLKY 146 (767)
Q Consensus 139 GlP~WL~~ 146 (767)
-.-.||.+
T Consensus 177 r~geflg~ 184 (238)
T KOG4039|consen 177 RQGEFLGN 184 (238)
T ss_pred cccchhhh
Confidence 22345654
No 217
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.51 E-value=81 Score=35.06 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCC------CCCCCceecccchhHHHHHHHHHHcCcEE
Q 004219 71 PDLIQKAKDGGLDVIQTYVFWNGH------EPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~yv~Wn~h------Ep~~G~ydf~g~~dL~~fl~la~~~GL~V 123 (767)
++.+++||++|++.+-. .-.... .-.|+...++ +..+.++.|+++||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 77899999999998741 001111 1123333333 4568999999999975
No 218
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=20.99 E-value=7.6e+02 Score=28.36 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=47.1
Q ss_pred EEEEEEEEeeCCCCCcccH----HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 52 KRILISGSIHYPRSTPEMW----PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 52 p~~l~sG~~Hy~r~~~~~W----~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
.+++++|.+.-...|+... .+.++++++.++. +|+...=|.... .+....++.++.|++|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCChh---------hhhhHHHHHHHCCcEEEecc
Confidence 3567888875434444333 3456677777764 444444444322 34556777889999988544
Q ss_pred ------CcccccccCCCCCCeeeccCCC
Q 004219 128 ------GPYVCAEWNYGGFPVWLKYVPG 149 (767)
Q Consensus 128 ------GPyicaEw~~GGlP~WL~~~p~ 149 (767)
.|... +-..|...+|+.-.|-
T Consensus 109 ~~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 109 SDDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred cccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 22211 1134445567765554
No 219
>PRK06703 flavodoxin; Provisional
Probab=20.86 E-value=5e+02 Score=24.87 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=59.7
Q ss_pred ECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 004219 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 48 ldGkp~~l~sG~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
+..-..++++-..+-.-.+|..+.+-+..+++.-++.....+|-...-. |. ......+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~-~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YP-LFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hH-HHHHHHHHHHHHHHHCCCEEcccC
Confidence 3344455555544433345666777788887766666666666322110 11 022456667777889999887764
Q ss_pred CcccccccCCCCCCeeeccCCCeeecCCChhHHHHHHHHHHHHHHHHH
Q 004219 128 GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (767)
Q Consensus 128 GPyicaEw~~GGlP~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (767)
= . -+ ...++..-++.+++|.++|++.++
T Consensus 121 ~--~-~~-----------------~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 L--K-IE-----------------LAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred e--E-Ee-----------------cCCCchhHHHHHHHHHHHHHHHHH
Confidence 1 0 01 111234677888899999887766
No 220
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=20.85 E-value=2.4e+02 Score=32.82 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=44.5
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 004219 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (767)
Q Consensus 64 r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vilr 126 (767)
.+..+..++.++..++.|.++--+|+. |-|.|.=-.|+=+ .+.+++++|++++++||..
T Consensus 172 ~~~~~~le~~~~~~~~~~~~~k~v~l~-nP~NPTG~~~s~e---~l~~ll~~a~~~~~~iI~D 230 (468)
T PLN02450 172 QITESALEEAYQQAQKLNLKVKGVLIT-NPSNPLGTTTTRT---ELNLLVDFITAKNIHLISD 230 (468)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCCcccCHH---HHHHHHHHHHHCCcEEEEE
Confidence 444555666666666667766556777 7888887777766 8999999999999998855
No 221
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=20.75 E-value=2.5e+02 Score=26.36 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=42.8
Q ss_pred EEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCC---CCCCceecccchhHHHHHHHHHHc-CcEEEee
Q 004219 58 GSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE---PTQGNYYFQDRYDLVRFIKLVQQA-GLYVHLR 126 (767)
Q Consensus 58 G~~Hy~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hE---p~~G~ydf~g~~dL~~fl~la~~~-GL~Vilr 126 (767)
|-++=-=-|.+.+..++++|+..|+.+|..-.-=-... +=| +++++.++.++. |+.||..
T Consensus 42 gf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP---------~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 42 GFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCP---------HIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred EEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCC---------CHHHHHHHHHHHhCCCEeee
Confidence 33443234688899999999999999998753322222 334 678899999888 9998864
No 222
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.53 E-value=1.9e+02 Score=31.17 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=48.1
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHH-HcCcEEEeecC
Q 004219 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ-QAGLYVHLRIG 128 (767)
Q Consensus 63 ~r~~~~~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~-~~GL~Vilr~G 128 (767)
.+...+.-.+..+.+-++|++.|++..+-...+...|..-|.....+.++.+..+ +.-+-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 3457777888999999999999999888776656667777775445556665553 44555667775
No 223
>PLN03036 glutamine synthetase; Provisional
Probab=20.38 E-value=2.6e+02 Score=32.58 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=45.5
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc----------hhH-HHH-HHHHHHcCcEEEeecCcccccccCC
Q 004219 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR----------YDL-VRF-IKLVQQAGLYVHLRIGPYVCAEWNY 137 (767)
Q Consensus 70 W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~ydf~g~----------~dL-~~f-l~la~~~GL~Vilr~GPyicaEw~~ 137 (767)
-++..+.+.++|++.-.+ +||-.||+|.|+=. ..+ ..+ -++|+++|+.+-.-|=|+. ++|+.
T Consensus 232 ~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~G 305 (432)
T PLN03036 232 SDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWNG 305 (432)
T ss_pred HHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcCC
Confidence 345566889999998887 99999999987621 112 122 2467889999998888853 56665
Q ss_pred CC
Q 004219 138 GG 139 (767)
Q Consensus 138 GG 139 (767)
-|
T Consensus 306 SG 307 (432)
T PLN03036 306 AG 307 (432)
T ss_pred CC
Confidence 55
No 224
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.26 E-value=1.6e+02 Score=31.40 Aligned_cols=55 Identities=22% Similarity=0.144 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCc-ee--cc-cchhHHHHHHHHHHcCcEEEeec
Q 004219 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YY--FQ-DRYDLVRFIKLVQQAGLYVHLRI 127 (767)
Q Consensus 69 ~W~d~l~kmKa~G~N~V~~yv~Wn~hEp~~G~-yd--f~-g~~dL~~fl~la~~~GL~Vilr~ 127 (767)
..++.++.++++|.++|.+.- .+...+. .+ +. -...|.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAG----YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecC----cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 467889999999999997621 1111110 00 11 11467788899999999999985
No 225
>PRK07094 biotin synthase; Provisional
Probab=20.11 E-value=92 Score=34.07 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCCCEEEEcee---CCCCCCCCCceecccchhHHHHHHHHHHcCcEE
Q 004219 71 PDLIQKAKDGGLDVIQTYVF---WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (767)
Q Consensus 71 ~d~l~kmKa~G~N~V~~yv~---Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~V 123 (767)
++.+++||++|++.|.+.+- -..++.-....+++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 67889999999998886331 11111111134444 7778899999999864
No 226
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=20.00 E-value=86 Score=34.88 Aligned_cols=60 Identities=20% Similarity=0.404 Sum_probs=37.5
Q ss_pred EEEEEEee------CCCCCcccHHHHHHHHHHC-CCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 004219 54 ILISGSIH------YPRSTPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (767)
Q Consensus 54 ~l~sG~~H------y~r~~~~~W~d~l~kmKa~-G~N~V~~yv~Wn~hEp~~G~ydf~g~~dL~~fl~la~~~GL~Vi 124 (767)
++.+|. | +.+++.+-+++..++-..+ |+|-.+- ||..-++.. ....++|++|+++|-+.|
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eq--fWgf~~~~~--------~~~A~lLkl~akYGGy~i 170 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQ--FWGFDDPGS--------EHFADLLKLCAKYGGYFI 170 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE----TTS--TTHH--------HHHHHHHHHHHHTT-EEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhh--heecCCchh--------HHHHHHHHHHHHhCceEE
Confidence 445666 7 3345566667777777765 9998887 566666544 367899999999999883
Done!