BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004220
(767 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLHSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLASAILARTLAKQEAE-QLARSKAASASE 471
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLASAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLASAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLLSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLWSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLFSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 256 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 311
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 312 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 366
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 367 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 420
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K + A+ A T K++ E
Sbjct: 421 Q-FTGG-------KPLESAILARTLAKQEAE 443
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 256 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 311
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 312 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 366
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 367 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 420
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 421 Q-FTGG-------KPLYSAILARTLAKQEAE 443
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 257 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 312
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 313 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 367
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 368 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 421
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 422 Q-FTGG-------KPLYSAILARTLAKQEAE 444
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y++ LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLWLPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 22/203 (10%)
Query: 379 DNLQKDNGIPKAVFPVMGGLAVGL---IALMFPEILYWGFENVDILLESRPFVKGLTADM 435
D Q+ +G + +MGG GL + L+ P GF + I + +
Sbjct: 278 DMFQRFHGGEIKKWVLMGGAIGGLCGILGLIEPAAAGGGFNLIPIAAAGN-----FSVGL 332
Query: 436 LLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILE 495
LL + ++V T LC +SG GG +AP L +G G A+G A A P H LE
Sbjct: 333 LLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFG----MAAAVLFPQYH---LE 385
Query: 496 VASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLSSWFTSG 551
+ + + GM A +A + PLT ++L+ E+T +Y+++LP+ LGA L+ +
Sbjct: 386 AGT---FAIAGMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGK 442
Query: 552 QMRRRDVKETKVAVHANTNRKRQ 574
+ + T A K Q
Sbjct: 443 PLYSTILARTLAKQDAEQAEKNQ 465
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 223 LKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFD-RRPRRKVSLVXXXXXXXXXXX 281
+K + TLG G LG EGP+V+IG ++ + V ++F R + +L+
Sbjct: 130 VKFIGGMGTLGAGMVLGREGPTVQIGGNLGRMVLDVFRMRSAEARHTLLATGAAAGLSAA 189
Query: 282 XXXXVAGCFFAVESV 296
+AG F +E +
Sbjct: 190 FNAPLAGILFIIEEM 204
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 436 LLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSIL- 494
L+ + + + T +C SG +GG +AP L I + +A + HF +L
Sbjct: 325 LILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMAR-------------HFHLLF 371
Query: 495 --EVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLL 539
++ P + GM A +A + PLT++LL E+T +Y ++LPLL
Sbjct: 372 PSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLL 418
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 207 LPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFD 260
LP ++ L I K V ++LG G G EGP++++G SI + G F
Sbjct: 116 LPLVWQRVLPI------KLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFK 163
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
G T +L+ ++ +VA S+ L G + PS IGA G YG+ + +
Sbjct: 317 GWTELILMPIIKFILVALSI--GLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA---- 370
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFT 549
P +Y +VG AA AGV + L+ +++FE+T R ++P+L +V L+
Sbjct: 371 -------IVPGSYAVVGAAAFTAGVTRA-LSCAVIIFEVTGQIRHLVPVLISVLLA--VI 420
Query: 550 SGQMRRRDVKETKV 563
G R + ET V
Sbjct: 421 VGNAFNRSLYETLV 434
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684
V E+M +TV + + EAL +M+ + +VD L+GL+T+ D+ KY
Sbjct: 151 LVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKN 210
Query: 685 AKTSRSKKLLVSEMCS 700
A + +LLV+ S
Sbjct: 211 AVRDENGELLVAAAVS 226
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 624 VFVSEVM-RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682
+ +S+VM + + +T + T L EA ++ K +VDN+ +L GL+T+ DIE+ ++
Sbjct: 175 IKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234
Query: 683 AQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLL-----SALILMDRYGVNQ 732
+ + +LLV G V A ++ L A++L +G +Q
Sbjct: 235 PNSAKDKQGRLLV-------GAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQ 282
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 610 IDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIG 669
I D+++++ ++ + + +T + T L EA ++ K +VDN+ +L G
Sbjct: 170 IQDYSIKISDV--------XTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQG 221
Query: 670 LLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLL-----SALIL 724
L+T+ DIE+ ++ + + +LLV G V A ++ L A++L
Sbjct: 222 LITIKDIEKVIEFPNSAKDKQGRLLV-------GAAVGVTADAXTRIDALVKASVDAIVL 274
Query: 725 MDRYGVNQ 732
+G +Q
Sbjct: 275 DTAHGHSQ 282
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESI 756
P T TP+M + A+ LM Y + +PVV E G+LVGLL +
Sbjct: 105 PITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-----GRLVGLLTNRDV 147
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 76/199 (38%), Gaps = 23/199 (11%)
Query: 528 LTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAV-HAN---TNRKRQFEIYTSRTR 583
LT+ RI +PL+ A T + + +E + + H N + RQ I
Sbjct: 42 LTRQIRINIPLVSAA--MDTVTEAALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTEN 99
Query: 584 GL--------------SSSDLLAEEEPYAINLCEVESSLCIDDWNLEV---EELKRRVFV 626
G+ + DL+AE + + + + E L N +V + L +++
Sbjct: 100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKNLSKKIKD 159
Query: 627 SEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK 686
R + + L +A ++ + +V DN L+GL+T+ DI ++ A
Sbjct: 160 LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPNAA 219
Query: 687 TSRSKKLLVSEMCSADGET 705
+LLV ET
Sbjct: 220 RDEKGRLLVGAAVGTSPET 238
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
P TA N++++ A ++ ++ +N +P+V EH G+LVG++
Sbjct: 13 PITAHSNISIMEAAKILIKHNINHLPIVDEH-----GKLVGII 50
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
P TA N++++ A ++ ++ +N +P+V EH G+LVG++
Sbjct: 11 PITAHSNISIMEAAKILIKHNINHLPIVDEH-----GKLVGII 48
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V E+M +T+ + EA+ L + A IV+++N LI L+T D+
Sbjct: 86 VREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDV--------- 136
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
R+ + E D ATP L M R G ++PVV E G
Sbjct: 137 --IRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSE------G 188
Query: 746 QLVGLL 751
+LVG++
Sbjct: 189 RLVGII 194
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 610 IDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIG 669
I D+N + E VT + T L A ++ + +VDN L G
Sbjct: 147 ISDYNAPISE--------HXTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSG 198
Query: 670 LLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGET 705
L+T+ DIE+ ++ A +LLV+ +T
Sbjct: 199 LITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDT 234
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681
+ + V +V +T ++EA L K S ++D++N +IG++T DI
Sbjct: 6 KNIKVKDVXTKNVITAKRHEGVVEAFEKXLKYKISSLPVIDDENKVIGIVTTTDI----G 61
Query: 682 YAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYG-----VNQVPVV 736
Y + + + + ++ + D T + ++L A+ D G +NQ+PVV
Sbjct: 62 YNLIRDKYTLETTIGDVXTKD------VITIHEDASILEAIKKXDISGKKEEIINQLPVV 115
Query: 737 MEHIPGQRGQLVGLLDRESII 757
+ +LVG++ II
Sbjct: 116 -----DKNNKLVGIISDGDII 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,228,503
Number of Sequences: 62578
Number of extensions: 645949
Number of successful extensions: 1213
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 70
length of query: 767
length of database: 14,973,337
effective HSP length: 106
effective length of query: 661
effective length of database: 8,340,069
effective search space: 5512785609
effective search space used: 5512785609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)