Query 004220
Match_columns 767
No_of_seqs 499 out of 4009
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 19:37:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01862 putative voltage-gate 100.0 3E-77 6.5E-82 695.9 59.1 550 90-762 23-572 (574)
2 KOG0475 Cl- channel CLC-3 and 100.0 3.8E-66 8.2E-71 563.2 31.5 565 95-761 58-695 (696)
3 KOG0474 Cl- channel CLC-7 and 100.0 4E-64 8.7E-69 545.0 31.8 595 54-761 55-747 (762)
4 PRK01610 putative voltage-gate 100.0 8.3E-60 1.8E-64 525.9 44.0 411 90-563 3-414 (418)
5 cd01033 ClC_like Putative ClC 100.0 2.1E-57 4.5E-62 503.3 41.6 384 99-551 1-385 (388)
6 PRK05277 chloride channel prot 100.0 1.7E-55 3.6E-60 496.6 42.6 413 93-564 2-415 (438)
7 cd01031 EriC ClC chloride chan 100.0 1.1E-55 2.5E-60 493.3 39.8 400 98-562 1-400 (402)
8 cd03684 ClC_3_like ClC-3-like 100.0 1.8E-55 3.9E-60 495.3 36.5 409 99-563 1-437 (445)
9 COG0038 EriC Chloride channel 100.0 7.1E-54 1.5E-58 480.6 43.1 364 143-563 65-428 (443)
10 cd01034 EriC_like ClC chloride 100.0 6.1E-54 1.3E-58 477.0 38.9 387 103-560 1-390 (390)
11 cd03685 ClC_6_like ClC-6-like 100.0 5.6E-54 1.2E-58 485.3 34.5 398 87-564 28-452 (466)
12 cd00400 Voltage_gated_ClC CLC 100.0 1.3E-52 2.8E-57 466.5 39.9 383 99-546 1-383 (383)
13 PF00654 Voltage_CLC: Voltage 100.0 8.3E-53 1.8E-57 462.5 33.9 350 150-550 1-354 (355)
14 cd01036 ClC_euk Chloride chann 100.0 1.2E-52 2.7E-57 469.3 33.6 388 99-560 1-416 (416)
15 KOG0476 Cl- channel CLC-2 and 100.0 1.3E-53 2.9E-58 470.5 23.8 497 92-682 96-648 (931)
16 cd03683 ClC_1_like ClC-1-like 100.0 3.5E-52 7.6E-57 466.5 33.8 397 92-563 2-416 (426)
17 cd03682 ClC_sycA_like ClC sycA 100.0 2.4E-50 5.2E-55 446.1 40.2 373 95-559 2-377 (378)
18 PRK03655 putative ion channel 100.0 1.1E-49 2.3E-54 442.3 42.2 384 88-549 9-397 (414)
19 PRK01862 putative voltage-gate 99.8 3.9E-19 8.5E-24 207.9 19.7 190 350-560 25-227 (574)
20 COG3448 CBS-domain-containing 99.8 8.7E-19 1.9E-23 177.1 14.0 251 500-763 110-374 (382)
21 cd00400 Voltage_gated_ClC CLC 99.7 3.3E-17 7.2E-22 182.6 16.5 184 357-560 1-194 (383)
22 cd01031 EriC ClC chloride chan 99.7 7.5E-17 1.6E-21 180.7 16.6 184 356-559 1-194 (402)
23 PRK05277 chloride channel prot 99.7 5.2E-16 1.1E-20 175.7 20.1 190 351-559 2-204 (438)
24 cd01034 EriC_like ClC chloride 99.7 2.4E-15 5.3E-20 167.7 21.0 192 88-337 198-389 (390)
25 COG2524 Predicted transcriptio 99.7 2.8E-16 6.1E-21 156.7 11.9 124 620-761 168-291 (294)
26 cd01033 ClC_like Putative ClC 99.7 4.4E-15 9.5E-20 165.3 20.1 182 89-330 202-386 (388)
27 cd03682 ClC_sycA_like ClC sycA 99.6 8.3E-15 1.8E-19 162.7 18.2 175 353-552 2-180 (378)
28 PRK01610 putative voltage-gate 99.6 8.6E-15 1.9E-19 164.2 17.5 184 348-553 3-201 (418)
29 cd03685 ClC_6_like ClC-6-like 99.6 1.7E-14 3.6E-19 164.1 15.0 195 349-548 32-239 (466)
30 COG3620 Predicted transcriptio 99.6 1.6E-14 3.6E-19 134.1 10.9 123 622-762 63-185 (187)
31 COG0038 EriC Chloride channel 99.5 1E-13 2.2E-18 156.5 18.2 144 391-554 68-217 (443)
32 cd03683 ClC_1_like ClC-1-like 99.5 4.2E-14 9.1E-19 159.2 14.2 189 350-550 2-201 (426)
33 PRK10892 D-arabinose 5-phospha 99.5 7.2E-14 1.6E-18 152.6 14.3 122 622-759 200-323 (326)
34 PRK11543 gutQ D-arabinose 5-ph 99.5 5.4E-14 1.2E-18 153.2 12.8 127 617-759 187-318 (321)
35 cd01036 ClC_euk Chloride chann 99.5 6.6E-14 1.4E-18 157.3 13.6 191 357-552 1-202 (416)
36 cd04603 CBS_pair_KefB_assoc Th 99.5 2.6E-13 5.7E-18 123.6 13.0 109 633-758 2-110 (111)
37 cd04619 CBS_pair_6 The CBS dom 99.5 4.1E-13 8.9E-18 122.9 13.7 112 633-758 2-113 (114)
38 cd03684 ClC_3_like ClC-3-like 99.5 4.1E-13 8.9E-18 152.0 15.8 178 357-551 1-182 (445)
39 PRK07807 inosine 5-monophospha 99.5 4.2E-13 9E-18 151.8 14.4 127 615-762 80-206 (479)
40 PRK03655 putative ion channel 99.5 2.3E-12 5.1E-17 144.0 19.7 178 349-552 12-203 (414)
41 cd04641 CBS_pair_28 The CBS do 99.5 7.1E-13 1.5E-17 122.4 13.0 118 633-758 2-119 (120)
42 cd04617 CBS_pair_4 The CBS dom 99.4 1.5E-12 3.2E-17 119.9 13.5 113 633-758 2-117 (118)
43 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.7E-12 3.6E-17 118.7 13.7 113 632-759 1-115 (115)
44 cd04630 CBS_pair_17 The CBS do 99.4 1.8E-12 3.9E-17 118.4 13.9 111 633-758 2-113 (114)
45 cd04618 CBS_pair_5 The CBS dom 99.4 1.2E-12 2.5E-17 117.0 11.5 94 633-758 2-97 (98)
46 cd04607 CBS_pair_NTP_transfera 99.4 2.7E-12 5.9E-17 116.9 13.2 110 633-758 3-112 (113)
47 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.9E-12 4.1E-17 119.8 12.3 117 632-759 2-124 (124)
48 PRK15094 magnesium/cobalt effl 99.4 2.3E-12 4.9E-17 137.8 14.0 125 621-763 64-191 (292)
49 cd04801 CBS_pair_M50_like This 99.4 2.7E-12 5.8E-17 117.2 11.8 111 633-758 2-113 (114)
50 cd04608 CBS_pair_PALP_assoc Th 99.4 2.4E-12 5.2E-17 120.1 11.4 113 632-759 2-123 (124)
51 cd04627 CBS_pair_14 The CBS do 99.4 4.9E-12 1.1E-16 117.3 13.4 114 633-757 2-121 (123)
52 cd04624 CBS_pair_11 The CBS do 99.4 5.8E-12 1.2E-16 114.4 13.6 110 633-758 2-111 (112)
53 cd04596 CBS_pair_DRTGG_assoc T 99.4 3.3E-12 7.2E-17 115.5 11.9 106 632-758 2-107 (108)
54 cd04605 CBS_pair_MET2_assoc Th 99.4 8.3E-12 1.8E-16 112.9 14.3 108 632-758 2-109 (110)
55 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 6.8E-12 1.5E-16 113.1 13.7 107 632-758 2-108 (109)
56 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 6.3E-12 1.4E-16 112.9 13.4 104 633-758 2-105 (106)
57 cd04639 CBS_pair_26 The CBS do 99.4 5.1E-12 1.1E-16 114.5 12.9 109 633-758 2-110 (111)
58 cd04614 CBS_pair_1 The CBS dom 99.4 3.7E-12 8.1E-17 113.2 11.5 95 633-759 2-96 (96)
59 cd04615 CBS_pair_2 The CBS dom 99.4 8E-12 1.7E-16 113.6 13.9 111 633-758 2-112 (113)
60 cd04623 CBS_pair_10 The CBS do 99.4 1.1E-11 2.3E-16 112.4 14.6 111 633-758 2-112 (113)
61 COG4109 Predicted transcriptio 99.4 2E-12 4.3E-17 134.5 10.4 119 623-762 187-307 (432)
62 TIGR03520 GldE gliding motilit 99.4 4.8E-12 1E-16 141.7 14.2 123 620-762 187-312 (408)
63 cd04629 CBS_pair_16 The CBS do 99.4 6.6E-12 1.4E-16 114.2 12.5 112 633-758 2-113 (114)
64 cd04642 CBS_pair_29 The CBS do 99.4 5.2E-12 1.1E-16 117.7 12.1 115 633-758 2-125 (126)
65 cd04631 CBS_pair_18 The CBS do 99.4 5.6E-12 1.2E-16 116.8 12.2 115 633-758 2-124 (125)
66 cd04626 CBS_pair_13 The CBS do 99.4 9.6E-12 2.1E-16 112.8 13.3 109 633-758 2-110 (111)
67 cd04643 CBS_pair_30 The CBS do 99.4 7.1E-12 1.5E-16 114.4 12.4 113 633-758 2-115 (116)
68 PF00654 Voltage_CLC: Voltage 99.4 5E-12 1.1E-16 139.5 13.4 147 395-560 1-151 (355)
69 cd04621 CBS_pair_8 The CBS dom 99.4 8.5E-12 1.8E-16 118.2 13.1 114 633-758 2-134 (135)
70 TIGR00400 mgtE Mg2+ transporte 99.4 4E-12 8.6E-17 144.3 12.8 121 622-763 129-254 (449)
71 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 1E-11 2.2E-16 112.9 13.0 111 633-758 3-113 (114)
72 cd04640 CBS_pair_27 The CBS do 99.4 8.1E-12 1.8E-16 116.5 12.6 115 633-758 2-125 (126)
73 cd04590 CBS_pair_CorC_HlyC_ass 99.4 1.1E-11 2.3E-16 112.4 13.0 108 633-758 2-110 (111)
74 cd04803 CBS_pair_15 The CBS do 99.3 9.6E-12 2.1E-16 114.7 12.9 115 633-758 2-121 (122)
75 cd04635 CBS_pair_22 The CBS do 99.3 6.1E-12 1.3E-16 116.0 11.6 115 633-758 2-121 (122)
76 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 1.3E-11 2.8E-16 112.1 13.1 112 633-758 2-113 (114)
77 cd04588 CBS_pair_CAP-ED_DUF294 99.3 1.5E-11 3.3E-16 111.2 13.4 108 633-758 2-109 (110)
78 COG2905 Predicted signal-trans 99.3 4.7E-12 1E-16 139.5 11.7 127 621-763 146-272 (610)
79 cd04595 CBS_pair_DHH_polyA_Pol 99.3 2.2E-11 4.7E-16 110.3 14.0 108 632-758 2-109 (110)
80 cd04632 CBS_pair_19 The CBS do 99.3 1.7E-11 3.7E-16 114.4 13.5 117 633-758 2-127 (128)
81 cd04620 CBS_pair_7 The CBS dom 99.3 1.6E-11 3.5E-16 112.1 13.0 110 633-758 2-114 (115)
82 cd04586 CBS_pair_BON_assoc Thi 99.3 9E-12 2E-16 117.5 11.2 115 632-758 2-134 (135)
83 cd04625 CBS_pair_12 The CBS do 99.3 2.6E-11 5.7E-16 110.0 13.7 110 633-758 2-111 (112)
84 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1E-11 2.2E-16 140.4 13.3 123 618-762 82-204 (475)
85 cd04589 CBS_pair_CAP-ED_DUF294 99.3 3.4E-11 7.3E-16 109.2 14.2 109 633-758 2-110 (111)
86 TIGR00393 kpsF KpsF/GutQ famil 99.3 8.3E-12 1.8E-16 132.4 11.8 114 623-752 154-268 (268)
87 TIGR01137 cysta_beta cystathio 99.3 1.7E-11 3.7E-16 140.0 15.1 125 618-760 329-453 (454)
88 cd04587 CBS_pair_CAP-ED_DUF294 99.3 1.8E-11 3.8E-16 111.2 12.3 111 633-758 2-112 (113)
89 PRK07107 inosine 5-monophospha 99.3 8.6E-12 1.9E-16 142.0 12.4 120 624-760 94-219 (502)
90 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 2.4E-11 5.1E-16 109.9 13.0 109 633-758 2-110 (111)
91 cd04602 CBS_pair_IMPDH_2 This 99.3 2E-11 4.4E-16 111.5 12.6 106 633-758 3-113 (114)
92 cd04585 CBS_pair_ACT_assoc2 Th 99.3 2.2E-11 4.7E-16 111.9 12.9 114 633-758 2-121 (122)
93 cd04800 CBS_pair_CAP-ED_DUF294 99.3 3.5E-11 7.6E-16 109.0 13.8 110 632-758 1-110 (111)
94 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 2.6E-11 5.7E-16 109.6 12.9 110 632-758 1-110 (111)
95 cd04622 CBS_pair_9 The CBS dom 99.3 2.9E-11 6.3E-16 109.8 13.2 111 633-758 2-112 (113)
96 cd04636 CBS_pair_23 The CBS do 99.3 2.7E-11 5.8E-16 113.9 12.9 114 633-758 2-131 (132)
97 cd04606 CBS_pair_Mg_transporte 99.3 1.6E-11 3.6E-16 111.1 10.8 102 637-759 2-108 (109)
98 TIGR01302 IMP_dehydrog inosine 99.3 2.1E-11 4.6E-16 138.2 13.7 121 621-761 77-201 (450)
99 cd04601 CBS_pair_IMPDH This cd 99.3 2.2E-11 4.8E-16 109.9 11.2 107 632-758 2-109 (110)
100 PLN02274 inosine-5'-monophosph 99.3 2.6E-11 5.7E-16 138.3 14.2 119 626-762 102-223 (505)
101 cd04802 CBS_pair_3 The CBS dom 99.3 6.4E-11 1.4E-15 107.5 14.0 110 633-758 2-111 (112)
102 cd04584 CBS_pair_ACT_assoc Thi 99.3 4.5E-11 9.7E-16 110.0 12.9 114 633-758 2-120 (121)
103 cd04637 CBS_pair_24 The CBS do 99.3 6.5E-11 1.4E-15 109.3 13.7 114 633-758 2-121 (122)
104 cd04599 CBS_pair_GGDEF_assoc2 99.3 5.4E-11 1.2E-15 106.5 12.6 103 633-758 2-104 (105)
105 cd04610 CBS_pair_ParBc_assoc T 99.3 5.2E-11 1.1E-15 107.0 12.2 105 632-758 2-106 (107)
106 cd04594 CBS_pair_EriC_assoc_ar 99.3 5.3E-11 1.2E-15 106.9 12.2 100 635-758 4-103 (104)
107 cd04633 CBS_pair_20 The CBS do 99.3 6.5E-11 1.4E-15 109.0 12.8 113 633-758 2-120 (121)
108 PRK05567 inosine 5'-monophosph 99.2 4.5E-11 9.8E-16 136.9 13.7 120 622-761 85-205 (486)
109 COG0517 FOG: CBS domain [Gener 99.2 9.6E-11 2.1E-15 107.0 13.2 113 628-757 3-117 (117)
110 cd04591 CBS_pair_EriC_assoc_eu 99.2 7.7E-11 1.7E-15 106.4 12.3 100 632-758 2-104 (105)
111 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.1E-10 2.3E-15 105.3 12.4 108 633-758 2-109 (110)
112 PTZ00314 inosine-5'-monophosph 99.2 6.9E-11 1.5E-15 134.9 12.9 120 624-761 96-218 (495)
113 cd02205 CBS_pair The CBS domai 99.2 2.2E-10 4.7E-15 102.7 13.6 111 633-758 2-112 (113)
114 cd04598 CBS_pair_GGDEF_assoc T 99.2 1.6E-10 3.4E-15 106.0 12.3 113 633-758 2-118 (119)
115 COG2239 MgtE Mg/Co/Ni transpor 99.2 4.1E-11 8.9E-16 133.5 9.6 119 624-763 132-255 (451)
116 PRK11573 hypothetical protein; 99.2 2.5E-10 5.5E-15 127.8 14.7 128 620-763 183-313 (413)
117 cd04634 CBS_pair_21 The CBS do 99.2 3E-10 6.5E-15 108.6 13.2 113 633-758 2-142 (143)
118 PRK14869 putative manganese-de 99.2 1.6E-10 3.4E-15 135.0 13.5 129 624-762 68-305 (546)
119 cd04638 CBS_pair_25 The CBS do 99.2 4.2E-10 9.1E-15 101.2 13.1 104 633-758 2-105 (106)
120 cd04592 CBS_pair_EriC_assoc_eu 99.1 3.7E-10 8.1E-15 106.8 11.5 108 633-740 2-119 (133)
121 COG1253 TlyC Hemolysins and re 99.0 1.8E-09 3.9E-14 122.0 13.7 126 620-763 202-330 (429)
122 COG4536 CorB Putative Mg2+ and 98.9 3.6E-09 7.8E-14 111.8 10.2 127 621-763 197-326 (423)
123 PF00571 CBS: CBS domain CBS d 98.7 3.6E-08 7.8E-13 78.4 7.3 56 626-681 1-56 (57)
124 KOG1764 5'-AMP-activated prote 98.7 5.9E-08 1.3E-12 107.3 11.5 123 633-763 238-361 (381)
125 PRK10070 glycine betaine trans 98.7 1.4E-07 3E-12 105.3 12.6 121 622-763 272-395 (400)
126 PF00571 CBS: CBS domain CBS d 98.7 6.8E-08 1.5E-12 76.8 7.1 56 695-761 1-56 (57)
127 KOG0474 Cl- channel CLC-7 and 98.6 6.5E-08 1.4E-12 107.8 7.3 190 349-550 87-301 (762)
128 TIGR01186 proV glycine betaine 98.6 4.6E-07 1E-11 99.9 13.9 113 630-763 248-360 (363)
129 COG4535 CorC Putative Mg2+ and 98.6 1.6E-07 3.5E-12 93.4 8.1 125 621-763 64-191 (293)
130 KOG2550 IMP dehydrogenase/GMP 98.6 1.1E-07 2.3E-12 101.4 7.0 110 632-761 116-228 (503)
131 TIGR00400 mgtE Mg2+ transporte 98.3 5E-07 1.1E-11 102.9 4.0 114 623-762 194-307 (449)
132 COG3448 CBS-domain-containing 98.2 1.8E-06 4E-11 88.6 5.9 80 671-761 221-302 (382)
133 KOG0476 Cl- channel CLC-2 and 98.2 7.1E-06 1.5E-10 93.6 9.9 173 348-531 94-275 (931)
134 COG2524 Predicted transcriptio 98.1 5.8E-06 1.3E-10 83.7 6.3 60 622-681 232-291 (294)
135 PRK14869 putative manganese-de 98.0 1.6E-06 3.6E-11 101.4 2.0 130 618-759 240-391 (546)
136 cd04603 CBS_pair_KefB_assoc Th 98.0 1E-05 2.2E-10 73.3 5.6 55 624-678 56-110 (111)
137 cd04597 CBS_pair_DRTGG_assoc2 98.0 1E-05 2.3E-10 74.0 5.5 60 619-678 51-112 (113)
138 PRK05567 inosine 5'-monophosph 97.9 3.3E-05 7.1E-10 88.9 9.1 119 623-759 146-265 (486)
139 COG3620 Predicted transcriptio 97.8 4.7E-05 1E-09 71.7 6.8 74 672-762 49-122 (187)
140 cd04619 CBS_pair_6 The CBS dom 97.8 3.6E-05 7.8E-10 70.0 6.1 57 622-678 57-113 (114)
141 KOG1764 5'-AMP-activated prote 97.8 0.00011 2.4E-09 81.4 10.5 125 633-765 163-290 (381)
142 cd04597 CBS_pair_DRTGG_assoc2 97.7 6.3E-05 1.4E-09 68.8 6.4 55 693-758 58-112 (113)
143 TIGR01303 IMP_DH_rel_1 IMP deh 97.7 0.00018 3.8E-09 82.1 11.3 58 624-681 146-203 (475)
144 PRK07807 inosine 5-monophospha 97.7 0.00015 3.2E-09 82.8 10.6 118 624-763 148-265 (479)
145 KOG0475 Cl- channel CLC-3 and 97.7 3.4E-05 7.4E-10 86.9 4.6 111 405-530 150-260 (696)
146 cd04607 CBS_pair_NTP_transfera 97.6 0.00011 2.4E-09 66.4 6.4 55 623-677 57-111 (113)
147 cd04600 CBS_pair_HPP_assoc Thi 97.6 9E-05 1.9E-09 68.1 5.7 57 622-678 67-123 (124)
148 cd04620 CBS_pair_7 The CBS dom 97.6 0.00012 2.6E-09 66.3 6.3 56 623-678 57-114 (115)
149 cd04615 CBS_pair_2 The CBS dom 97.6 0.00015 3.2E-09 65.5 6.4 58 621-678 55-112 (113)
150 cd04627 CBS_pair_14 The CBS do 97.6 0.00015 3.3E-09 66.8 6.6 54 625-678 69-122 (123)
151 cd04596 CBS_pair_DRTGG_assoc T 97.5 0.00016 3.4E-09 64.9 6.2 56 623-678 52-107 (108)
152 cd04617 CBS_pair_4 The CBS dom 97.5 0.00012 2.6E-09 67.0 5.3 57 622-678 56-117 (118)
153 cd04630 CBS_pair_17 The CBS do 97.5 0.00014 3.1E-09 65.9 5.6 56 622-678 58-113 (114)
154 cd04585 CBS_pair_ACT_assoc2 Th 97.5 0.00018 3.9E-09 65.5 6.3 57 622-678 65-121 (122)
155 cd04606 CBS_pair_Mg_transporte 97.5 0.00019 4E-09 64.6 6.1 57 623-679 52-108 (109)
156 cd04610 CBS_pair_ParBc_assoc T 97.5 0.00021 4.5E-09 63.7 6.3 56 623-678 51-106 (107)
157 cd04604 CBS_pair_KpsF_GutQ_ass 97.5 0.00022 4.9E-09 64.2 6.4 55 624-678 59-113 (114)
158 PRK07107 inosine 5-monophospha 97.5 0.00028 6.1E-09 81.0 8.6 59 622-680 159-219 (502)
159 cd04625 CBS_pair_12 The CBS do 97.5 0.00019 4.2E-09 64.6 5.6 55 623-678 57-111 (112)
160 cd04635 CBS_pair_22 The CBS do 97.5 0.00021 4.6E-09 65.4 5.8 57 622-678 65-121 (122)
161 cd04587 CBS_pair_CAP-ED_DUF294 97.4 0.00017 3.7E-09 65.0 5.1 55 624-678 58-112 (113)
162 cd04611 CBS_pair_PAS_GGDEF_DUF 97.4 0.0003 6.4E-09 63.1 6.4 57 622-678 54-110 (111)
163 cd04583 CBS_pair_ABC_OpuCA_ass 97.4 0.00028 6.2E-09 63.0 6.3 55 624-678 54-108 (109)
164 cd04582 CBS_pair_ABC_OpuCA_ass 97.4 0.00031 6.7E-09 62.5 6.4 54 625-678 52-105 (106)
165 cd04639 CBS_pair_26 The CBS do 97.4 0.00027 5.8E-09 63.6 5.9 55 624-678 56-110 (111)
166 cd04602 CBS_pair_IMPDH_2 This 97.4 0.00029 6.3E-09 63.9 6.1 55 624-678 57-113 (114)
167 cd04801 CBS_pair_M50_like This 97.4 0.00021 4.5E-09 64.8 5.1 56 623-678 56-113 (114)
168 cd04803 CBS_pair_15 The CBS do 97.4 0.00029 6.2E-09 64.5 6.0 57 622-678 65-121 (122)
169 cd04593 CBS_pair_EriC_assoc_ba 97.4 0.00026 5.7E-09 64.2 5.7 55 624-678 58-114 (115)
170 cd04601 CBS_pair_IMPDH This cd 97.4 0.00033 7.1E-09 62.7 6.3 56 623-678 53-109 (110)
171 cd04631 CBS_pair_18 The CBS do 97.4 0.00026 5.7E-09 65.1 5.7 56 623-678 69-124 (125)
172 cd04618 CBS_pair_5 The CBS dom 97.4 0.00038 8.2E-09 61.9 6.3 49 708-760 2-50 (98)
173 cd04588 CBS_pair_CAP-ED_DUF294 97.4 0.00036 7.9E-09 62.6 6.1 55 624-678 55-109 (110)
174 PLN02274 inosine-5'-monophosph 97.4 0.00087 1.9E-08 77.2 10.6 61 622-682 161-223 (505)
175 cd04595 CBS_pair_DHH_polyA_Pol 97.3 0.00038 8.3E-09 62.5 6.1 56 622-678 54-109 (110)
176 smart00116 CBS Domain in cysta 97.3 0.00057 1.2E-08 50.7 6.1 47 709-760 2-48 (49)
177 cd04641 CBS_pair_28 The CBS do 97.3 0.00056 1.2E-08 62.7 7.3 49 708-761 2-50 (120)
178 cd04621 CBS_pair_8 The CBS dom 97.3 0.0004 8.6E-09 65.6 6.4 55 623-678 80-134 (135)
179 cd04622 CBS_pair_9 The CBS dom 97.3 0.00034 7.4E-09 63.0 5.7 55 624-678 58-112 (113)
180 cd04636 CBS_pair_23 The CBS do 97.3 0.0004 8.7E-09 64.8 6.4 57 621-678 75-131 (132)
181 cd04623 CBS_pair_10 The CBS do 97.3 0.00038 8.2E-09 62.5 5.9 55 623-678 58-112 (113)
182 PTZ00314 inosine-5'-monophosph 97.3 0.00074 1.6E-08 77.7 9.4 59 623-681 158-218 (495)
183 PRK11543 gutQ D-arabinose 5-ph 97.3 0.0004 8.7E-09 75.8 6.8 57 623-679 262-318 (321)
184 cd04605 CBS_pair_MET2_assoc Th 97.3 0.00053 1.1E-08 61.5 6.5 54 625-678 56-109 (110)
185 cd04586 CBS_pair_BON_assoc Thi 97.3 0.00029 6.4E-09 66.0 4.9 56 622-678 79-134 (135)
186 cd04642 CBS_pair_29 The CBS do 97.3 0.00052 1.1E-08 63.5 6.6 52 627-678 74-125 (126)
187 cd04612 CBS_pair_SpoIVFB_EriC_ 97.3 0.00054 1.2E-08 61.4 6.4 55 624-678 56-110 (111)
188 cd04802 CBS_pair_3 The CBS dom 97.3 0.00049 1.1E-08 61.9 6.1 56 622-678 56-111 (112)
189 cd04633 CBS_pair_20 The CBS do 97.3 0.00034 7.4E-09 63.9 5.2 57 621-678 64-120 (121)
190 cd04640 CBS_pair_27 The CBS do 97.3 0.00028 6E-09 65.4 4.5 57 622-678 62-125 (126)
191 cd04643 CBS_pair_30 The CBS do 97.3 0.00035 7.6E-09 63.2 5.1 54 623-678 62-115 (116)
192 cd04629 CBS_pair_16 The CBS do 97.3 0.00034 7.3E-09 63.1 4.8 55 623-678 59-113 (114)
193 cd04626 CBS_pair_13 The CBS do 97.3 0.00045 9.8E-09 62.1 5.7 55 623-678 56-110 (111)
194 COG4175 ProV ABC-type proline/ 97.3 0.0003 6.5E-09 74.0 4.9 130 602-762 253-384 (386)
195 cd04800 CBS_pair_CAP-ED_DUF294 97.3 0.00048 1E-08 61.9 5.8 55 623-678 56-110 (111)
196 cd04613 CBS_pair_SpoIVFB_EriC_ 97.3 0.00044 9.5E-09 62.2 5.6 56 623-678 57-113 (114)
197 cd04589 CBS_pair_CAP-ED_DUF294 97.3 0.00046 1E-08 62.0 5.6 56 622-678 55-110 (111)
198 cd04599 CBS_pair_GGDEF_assoc2 97.2 0.00053 1.1E-08 60.8 5.8 53 624-677 51-103 (105)
199 cd04624 CBS_pair_11 The CBS do 97.2 0.00063 1.4E-08 61.2 6.3 56 623-678 56-111 (112)
200 smart00116 CBS Domain in cysta 97.2 0.00089 1.9E-08 49.6 6.0 47 634-680 2-48 (49)
201 cd04592 CBS_pair_EriC_assoc_eu 97.2 0.00094 2E-08 63.0 7.5 50 708-762 2-51 (133)
202 cd04637 CBS_pair_24 The CBS do 97.2 0.00053 1.2E-08 62.8 5.6 55 624-678 67-121 (122)
203 cd04594 CBS_pair_EriC_assoc_ar 97.2 0.0006 1.3E-08 60.8 5.4 54 624-678 50-103 (104)
204 PRK15094 magnesium/cobalt effl 97.2 0.001 2.2E-08 71.5 8.0 96 624-726 133-228 (292)
205 PRK10892 D-arabinose 5-phospha 97.2 0.00062 1.4E-08 74.4 6.5 57 622-679 267-323 (326)
206 COG4109 Predicted transcriptio 97.1 0.00083 1.8E-08 71.2 6.6 66 619-684 244-309 (432)
207 cd04614 CBS_pair_1 The CBS dom 97.1 0.0011 2.3E-08 58.6 6.5 47 708-759 2-48 (96)
208 cd04584 CBS_pair_ACT_assoc Thi 97.1 0.0009 2E-08 61.0 6.0 57 621-678 64-120 (121)
209 cd04590 CBS_pair_CorC_HlyC_ass 97.1 0.00081 1.7E-08 60.4 5.6 54 624-678 57-110 (111)
210 cd04632 CBS_pair_19 The CBS do 97.1 0.0012 2.5E-08 61.2 6.3 57 622-678 69-127 (128)
211 COG0517 FOG: CBS domain [Gener 97.0 0.0012 2.5E-08 59.8 5.9 52 625-676 63-116 (117)
212 cd04608 CBS_pair_PALP_assoc Th 97.0 0.002 4.3E-08 59.8 7.4 49 708-761 3-51 (124)
213 TIGR03415 ABC_choXWV_ATP choli 97.0 0.0022 4.8E-08 71.3 9.0 112 619-761 269-380 (382)
214 cd04598 CBS_pair_GGDEF_assoc T 97.0 0.0012 2.7E-08 60.0 5.8 57 622-678 59-118 (119)
215 TIGR01302 IMP_dehydrog inosine 97.0 0.0025 5.5E-08 72.7 9.2 59 623-681 142-201 (450)
216 TIGR03520 GldE gliding motilit 97.0 0.0022 4.8E-08 72.2 8.6 96 624-727 255-350 (408)
217 cd04591 CBS_pair_EriC_assoc_eu 96.9 0.0014 3.1E-08 58.7 5.6 49 629-678 56-104 (105)
218 TIGR01137 cysta_beta cystathio 96.8 0.0025 5.3E-08 73.1 7.8 61 690-761 332-392 (454)
219 cd04609 CBS_pair_PALP_assoc2 T 96.8 0.0017 3.7E-08 57.9 5.0 54 623-678 56-109 (110)
220 cd02205 CBS_pair The CBS domai 96.8 0.0026 5.5E-08 56.3 5.9 53 626-678 60-112 (113)
221 TIGR00393 kpsF KpsF/GutQ famil 96.8 0.0024 5.3E-08 67.6 6.5 58 693-761 155-213 (268)
222 COG2239 MgtE Mg/Co/Ni transpor 96.7 0.002 4.3E-08 72.6 5.9 62 622-683 194-255 (451)
223 cd04634 CBS_pair_21 The CBS do 96.7 0.0034 7.3E-08 59.7 6.0 56 622-678 87-142 (143)
224 cd04638 CBS_pair_25 The CBS do 96.6 0.0037 8E-08 55.6 5.7 54 624-678 52-105 (106)
225 COG2905 Predicted signal-trans 96.3 0.0056 1.2E-07 69.0 6.1 60 621-681 211-270 (610)
226 PRK11573 hypothetical protein; 96.2 0.015 3.3E-07 65.6 9.0 64 689-760 183-246 (413)
227 TIGR01186 proV glycine betaine 96.0 0.014 3.1E-07 64.6 7.0 57 624-681 302-358 (363)
228 COG1253 TlyC Hemolysins and re 95.5 0.028 6E-07 63.9 7.1 67 689-763 202-268 (429)
229 KOG2550 IMP dehydrogenase/GMP 95.5 0.03 6.6E-07 60.7 6.7 59 622-680 169-227 (503)
230 COG1125 OpuBA ABC-type proline 95.3 0.094 2E-06 54.2 9.3 146 599-759 154-308 (309)
231 PRK10070 glycine betaine trans 94.9 0.054 1.2E-06 60.9 6.9 57 624-681 337-393 (400)
232 COG4535 CorC Putative Mg2+ and 94.1 0.013 2.8E-07 59.1 -0.2 98 641-763 32-129 (293)
233 COG1125 OpuBA ABC-type proline 92.8 0.11 2.4E-06 53.7 4.0 80 599-678 221-307 (309)
234 COG4536 CorB Putative Mg2+ and 92.2 0.67 1.4E-05 50.4 8.9 50 632-681 275-324 (423)
235 KOG2118 Predicted membrane pro 87.2 1.2 2.5E-05 51.5 6.5 127 618-761 198-328 (498)
236 TIGR03415 ABC_choXWV_ATP choli 86.6 1.1 2.4E-05 50.0 5.8 55 624-681 326-380 (382)
237 COG4175 ProV ABC-type proline/ 76.6 4.3 9.4E-05 43.6 5.3 52 629-681 332-383 (386)
238 TIGR02865 spore_II_E stage II 38.2 3.3E+02 0.0071 33.6 12.7 27 348-374 113-139 (764)
239 PRK11388 DNA-binding transcrip 30.4 83 0.0018 37.8 5.9 97 643-752 61-162 (638)
240 PF01102 Glycophorin_A: Glycop 29.5 82 0.0018 29.3 4.3 17 351-367 66-82 (122)
241 PRK10026 arsenate reductase; P 27.6 3.9E+02 0.0085 25.5 8.7 107 634-760 6-116 (141)
242 PRK01844 hypothetical protein; 27.1 1.2E+02 0.0027 25.3 4.4 18 351-368 7-24 (72)
243 KOG0236 Sulfate/bicarbonate/ox 25.8 5.8E+02 0.013 30.9 11.8 36 249-284 345-380 (665)
244 TIGR01148 mtrC N5-methyltetrah 24.1 8.3E+02 0.018 25.7 10.7 17 353-369 19-35 (265)
245 COG5336 Uncharacterized protei 22.3 1.3E+02 0.0029 27.2 4.0 38 245-282 56-93 (116)
No 1
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=3e-77 Score=695.87 Aligned_cols=550 Identities=27% Similarity=0.402 Sum_probs=453.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004220 90 GVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDD 169 (767)
Q Consensus 90 ~~~l~~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~ 169 (767)
.++++++++|+++|+++.+|++++++.++++|+..+... .+. ...+|++.+++|++||+++++++++....+ .
T Consensus 23 ~~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~p~~ggli~~~~~~~~~~~~--~ 95 (574)
T PRK01862 23 TMLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFV-EMA----KSLPWYVRVWLPAAGGFLAGCVLLLANRGA--R 95 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH-HHh----hcccHHHHHHHHHHHHHHHHHHHHHhcccc--c
Confidence 368899999999999999999999999999997533110 111 123677778899999999998865433221 1
Q ss_pred CCCcccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHH
Q 004220 170 DDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGK 249 (767)
Q Consensus 170 ~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga 249 (767)
+ +++.+.+.....+ ....+++..+.|++++++++++|+|+|||||++|+|+
T Consensus 96 ~-~g~~~~~~~~~~~----------------------------~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga 146 (574)
T PRK01862 96 K-GGKTDYMEAVALG----------------------------DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAA 146 (574)
T ss_pred c-CCcHHHHHHHHcC----------------------------CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHH
Confidence 1 2223322221100 1112234567899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHHhh
Q 004220 250 SIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329 (767)
Q Consensus 250 ~ig~~~~~~~~~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~ 329 (767)
++|++++++++.+++++|.+++||+|||+||+||||++|++|++|++..+ ++.+.+.+ +++++++|+++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~-------~~~~~~~~-~~~as~~a~~v~~~ 218 (574)
T PRK01862 147 LAASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGS-------IAMESFGP-LVVASVVANIVMRE 218 (574)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhh-------ccHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764 33455554 68899999999999
Q ss_pred hcCCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcc
Q 004220 330 GLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPE 409 (767)
Q Consensus 330 ~~g~~~~f~~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~P~ 409 (767)
+.|.++.|.++.++..+..++++++++|++||++|.+|++++.+++++++ +.+.+.+++++++|+++|++.+++|+
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~----~~~~~~~~~~~~~gl~~g~l~~~~p~ 294 (574)
T PRK01862 219 FAGYQPPYEMPVFPAVTGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFK----RLPVPLPVRLALGGLLVGVISVWVPE 294 (574)
T ss_pred HcCCCceeeCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 89999999988766556788999999999999999999998877655443 23345567889999999999999999
Q ss_pred cccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCcc
Q 004220 410 ILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489 (767)
Q Consensus 410 ~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~ 489 (767)
.+|+|++.++.++++. .+...++.++++|+++|++|+|+|+|||+|+|++++||++|+++|++++.+++.
T Consensus 295 ~~g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~----- 364 (574)
T PRK01862 295 VWGNGYSVVNTILHAP-----WTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPG----- 364 (574)
T ss_pred HhcCCHHHHHHHHcCC-----chHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 9999999999888654 345566778899999999999999999999999999999999999999876553
Q ss_pred ccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCcchhhhhHHhhhcc
Q 004220 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANT 569 (767)
Q Consensus 490 ~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v~~~~~~~~~~~~~~~~~~~~~ 569 (767)
....|..|+++||+|++++++|+|+|++++++|+|++++.++|+|+++++|+++++ .+..+++|+.....+.
T Consensus 365 -----~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~-~~~~~~iy~~~~~~~~-- 436 (574)
T PRK01862 365 -----HTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTAR-ALGTTSMYEITLRRHQ-- 436 (574)
T ss_pred -----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH-HhCCCChHHHHHHhcc--
Confidence 22357889999999999999999999999999999999999999999999988775 4567889987542100
Q ss_pred ccccchhhhccccccCCCcchhhcccccccccccccccccccccchhhhhhhccCccccccccCceEEeCCCCHHHHHHH
Q 004220 570 NRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTL 649 (767)
Q Consensus 570 ~~~~~~~~~p~~~~~l~~~~~l~~~~~~~~~L~~~~~~l~l~d~~~~~~~~l~~~~V~dvM~~~~~~V~~~~tl~eal~~ 649 (767)
.+.+++.++.++|+|+|+++..++++++++.|+.+.
T Consensus 437 --------------------------------------------~~~~~~~L~~~~V~dim~~~~~~v~~~~tl~ea~~~ 472 (574)
T PRK01862 437 --------------------------------------------DEAERERLRTTQMRELIQPAQTVVPPTASVADMTRV 472 (574)
T ss_pred --------------------------------------------ccchhhHHhhCcHHHHhcCCCceeCCCCCHHHHHHH
Confidence 012356789999999999999999999999999999
Q ss_pred HHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcC
Q 004220 650 MLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYG 729 (767)
Q Consensus 650 m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~ 729 (767)
|.+++.+.+||+|++++++|+|+.+|+.+.....+ ..++.+++|+|++ ++.++++|++++|++++|.+++
T Consensus 473 l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~----~~~~~~v~dim~~------~~~~v~~d~~L~~al~~m~~~~ 542 (574)
T PRK01862 473 FLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR----DTTDKTAADYAHT------PFPLLTPDMPLGDALEHFMAFQ 542 (574)
T ss_pred HHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc----ccccchHHHhccC------CCeeECCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999987653211 1234578899988 7889999999999999999999
Q ss_pred CCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhh
Q 004220 730 VNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 762 (767)
Q Consensus 730 ~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~ 762 (767)
.+.+||+|++ ++++++|+||++|+++++++
T Consensus 543 ~~~lpVVd~~---~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 543 GERLPVVESE---ASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCeeeeEeCC---CCCeEEEEEEHHHHHHHHHh
Confidence 9999999961 02589999999999999865
No 2
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-66 Score=563.18 Aligned_cols=565 Identities=24% Similarity=0.288 Sum_probs=432.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------------------------------cCCccccccCCCchhHHHH
Q 004220 95 SCLVGLLTGIGVVLFNKGVHEIRDFFWDGIP------------------------------YGGASWLREKPIPAIWIRV 144 (767)
Q Consensus 95 ~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~w~~~ 144 (767)
++++|+.+|..+.+.+...+| |++-+... ....+|- .++. ..|+++
T Consensus 58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~-~~~~-~~~l~y 133 (696)
T KOG0475|consen 58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWT-GHYI-VSYLIY 133 (696)
T ss_pred hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCC-Ccch-HHHHHH
Confidence 578888888888888888876 33222111 0011111 1222 467666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHH
Q 004220 145 VLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLK 224 (767)
Q Consensus 145 ~l~p~~ggll~gll~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k 224 (767)
.++.+...++...+.+. .. +-.-|++|||+|...- ++..+.+.+.+++++|
T Consensus 134 ~~~al~fa~la~~lv~~--~A--P~A~gSGIpEIK~ilS-------------------------Gf~~~~~lg~~tl~iK 184 (696)
T KOG0475|consen 134 VLWALLFAFLAVSLVKV--VA--PYACGSGIPEIKTILS-------------------------GFIIRGFLGKWTLLIK 184 (696)
T ss_pred HHHHHHHHHHHHHHhhh--ee--hhhhcCCCccceeeec-------------------------cchhhhhhhHHHHhhh
Confidence 66665655666555442 22 3345677999986421 1122568889999999
Q ss_pred HHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhhhc---CCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccc
Q 004220 225 AVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFD---RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSS 301 (767)
Q Consensus 225 ~l~~~l~l~~G~s~G~EgP~v~iga~ig~~~~~~~~---~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~ 301 (767)
.++..+++++|.|+|||||+||++.++|+.++++|+ .+...+|+.+++++|||+|++||||+||++|++|++. +++
T Consensus 185 sVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~-~~f 263 (696)
T KOG0475|consen 185 SVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVS-YYF 263 (696)
T ss_pred hhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhh-hcC
Confidence 999999999999999999999999999999999986 5678899999999999999999999999999999997 333
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhhh---cCCCCccccCcCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004220 302 AADSSASLAYTTSMVILSAVIASVVSEVG---LGSEPAFKVPEYDF-RSPGELPLYLLLGVLCGLISLTLSRCTTYMLAI 377 (767)
Q Consensus 302 ~~~~~~~~~~~~~~~~~aa~~a~~v~~~~---~g~~~~f~~~~~~~-~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~ 377 (767)
.. +. +...++++++|..+.+.. .++++.+..++|+. |++.|+++|+++|++||+.|.+|.|++.++.+.
T Consensus 264 p~------kt-lw~sff~aLsAv~~L~~i~pf~~~~~vLf~V~Y~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~ 336 (696)
T KOG0475|consen 264 PL------KT-LWRSFFCALSAVTALRSINPFGNSRLVLFYVDYDRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRF 336 (696)
T ss_pred Cc------cc-hHHHHHHHHHHHHHHeeecccCCCceEEEEEeccCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 21 11 222456777777776653 34455666666654 378999999999999999999999999888776
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCcc---------HHHHHHHHHHHHHHHH
Q 004220 378 VDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLT---------ADMLLQLVAAKIVATS 448 (767)
Q Consensus 378 ~~~~~~~~~~~~~~~~~lggl~vg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~---------~~~l~~~~~~K~l~t~ 448 (767)
++.. + ...+....+++++++++++.+..|+...++.+.++.+++.++...+.+ ...|+...++|+++|.
T Consensus 337 rK~~-~-lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ 414 (696)
T KOG0475|consen 337 RKSS-K-LGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTI 414 (696)
T ss_pred cchh-h-ccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 5544 2 233345678889999999999999999999999999999876543333 4557778999999999
Q ss_pred HhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 004220 449 LCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFEL 528 (767)
Q Consensus 449 ~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~El 528 (767)
+|+|++.|+|+|.||++|||++|+++|.+..+.++. |.+.+...+++.|+.|+++||||.++|+||+|+|.+||+||+
T Consensus 415 ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~--~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFEL 492 (696)
T KOG0475|consen 415 FTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQN--PDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFEL 492 (696)
T ss_pred hhhhccCccceecchHHHHHHHHHHHHHHHHHHhcC--CCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeec
Confidence 999999999999999999999999999888888775 444555668899999999999999999999999999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHhhhccCcchhhhhHHhhhccccccchhhhccccccCCCcchhhcccccccccccccccc
Q 004220 529 TQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSL 608 (767)
Q Consensus 529 tg~~~~~lP~~~a~~va~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~l~~~~~~~~~L~~~~~~l 608 (767)
||++++++|+|+|+++|+|+++.+.. ..+||.. ++.|+||... +.
T Consensus 493 TG~l~~IlPlm~av~~SkwI~d~~gk-~gIyda~----------I~~ng~P~l~----~k-------------------- 537 (696)
T KOG0475|consen 493 TGALNYILPLMLAVMISKWIGDGLGK-TGIYDAH----------IELNGYPFLD----SK-------------------- 537 (696)
T ss_pred cCcceeHHHHHHHHHHHHHHHhcccc-chHHHHH----------HHhcCCCCcc----cc--------------------
Confidence 99999999999999999999998864 4588874 4567776421 00
Q ss_pred cccccchhhhhhhccCcccccc---cc--CceEEeCC-CCHHHHHHHHHHcCCcEEEEeC--CCCcEEEEEehhhHHHHH
Q 004220 609 CIDDWNLEVEELKRRVFVSEVM---RT--RYVTVLMT-TLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEEFS 680 (767)
Q Consensus 609 ~l~d~~~~~~~~l~~~~V~dvM---~~--~~~~V~~~-~tl~eal~~m~~~~~~~lpVvd--~~g~lvGiVt~~dL~~~l 680 (767)
+..++.-..++| +. ...++..+ ++++|...+|.+++++.+||+- ++++++|+|.++|+.-.+
T Consensus 538 ----------~e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i 607 (696)
T KOG0475|consen 538 ----------SEFSSTLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAI 607 (696)
T ss_pred ----------cccccchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHH
Confidence 001111112222 22 34555554 8999999999999999888873 357899999999998877
Q ss_pred HHHhhhcc-------------------cccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCC
Q 004220 681 KYAQAKTS-------------------RSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIP 741 (767)
Q Consensus 681 ~~~~~~~~-------------------~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~ 741 (767)
.+.+..++ .......+++|+. .+.++..+++.+.+.+++++.+++...|.+
T Consensus 608 ~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~------tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~---- 677 (696)
T KOG0475|consen 608 LNARKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDM------TPFTVTDLTPMETVVDLFRKLGLRQILVTK---- 677 (696)
T ss_pred hhhccccccceecccccCCCCccccCCCCCCcCceeeccC------CcccccccCcHHHHHHHHHhhCceEEEEcc----
Confidence 64332111 1122234556655 889999999999999999999999998887
Q ss_pred CCCCeEEEEEeHHHHHHHhh
Q 004220 742 GQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 742 ~~~g~lvGIVt~~DIl~~~~ 761 (767)
+|++.|+||++|+++..+
T Consensus 678 --~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 678 --NGILLGIITKKDCLRHTR 695 (696)
T ss_pred --CCeeEeeeehHHHHHhhc
Confidence 799999999999998765
No 3
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-64 Score=545.04 Aligned_cols=595 Identities=19% Similarity=0.256 Sum_probs=430.5
Q ss_pred CCccccccCCCCCcchhccCCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccc
Q 004220 54 TKSLRLRPLGALPENERNRKEQPMIIGIDGHEVGNSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLR 133 (767)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~ 133 (767)
-+|++|.+- ||+-.+.+|.- .........+...|.+++++|+.+|+++...+..++.+..+.+..+.+. ...
T Consensus 55 yESLDYei~----ENdlf~e~~r~-~~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~---v~~ 126 (762)
T KOG0474|consen 55 YESLDYEIC----ENDLFLEDWRT-RDKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNS---VEE 126 (762)
T ss_pred ccccchhhh----cchHHHHHHHh-hcccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH---HHH
Confidence 677888777 66655444431 1112223445667999999999999999999999999999888654211 000
Q ss_pred c-CCCchhHHHHHHH---HHHHHHHHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCcccccccchhhhhccCCCCCc
Q 004220 134 E-KPIPAIWIRVVLV---PACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPT 209 (767)
Q Consensus 134 ~-~~~~~~w~~~~l~---p~~ggll~gll~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 209 (767)
. ..-+..|..++.. -+.--++.+.+..+ -.+...|+||||+| .|.|+.. .|
T Consensus 127 ~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~----iaP~AAGSGIPevK--~YLNGV~------------------iP- 181 (762)
T KOG0474|consen 127 CRSQKGCLALSLLVLLGFNLVLVFLASVLVAY----IAPVAAGSGIPEVK--CYLNGVK------------------IP- 181 (762)
T ss_pred hhhccccHHHHHHHHHHHhHHHHHHHHHHHHe----echhccCCCCchhh--hhhcCcc------------------Cc-
Confidence 0 0001123221111 11111222223211 14566788899998 5777642 22
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHh-----------hhc--CCchhhHHHHhhhhhH
Q 004220 210 IYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGN-----------LFD--RRPRRKVSLVAAGSAA 276 (767)
Q Consensus 210 ~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~ig~~~~~-----------~~~--~~~~~~~~l~~~g~aA 276 (767)
.+...++++.|+++.+.++++|..+|||||++|.|+++|+.++| ||+ .++++||.++.||+||
T Consensus 182 ----~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAA 257 (762)
T KOG0474|consen 182 ----GIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAA 257 (762)
T ss_pred ----ceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHH
Confidence 34556788999999999999999999999999999999999997 333 4788999999999999
Q ss_pred HHHHhccchhHHHHHHHHhhc--cccccccchhhhhhhHHHHHHHHHHHHHHHhh-----hcCCCCc--------cccCc
Q 004220 277 GISSGFNAAVAGCFFAVESVI--WPSSAADSSASLAYTTSMVILSAVIASVVSEV-----GLGSEPA--------FKVPE 341 (767)
Q Consensus 277 g~aa~F~aPl~g~lf~~E~~~--~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~-----~~g~~~~--------f~~~~ 341 (767)
|+||+|+||++|++|++|+.. |++ .+++..++++.+.+++-+. ..|.-.. |.+-+
T Consensus 258 GVaAAF~APvGGvLFaLEE~aS~Wnq----------~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~ 327 (762)
T KOG0474|consen 258 GVAAAFRAPVGGVLFALEEGASWWNQ----------ALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFD 327 (762)
T ss_pred hHHHHhCCCccceEEEechhhHHHHh----------hHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccC
Confidence 999999999999999999973 432 2333456666666666541 1232222 22221
Q ss_pred CC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhc---------c-c
Q 004220 342 YD-FRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFP---------E-I 410 (767)
Q Consensus 342 ~~-~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~P---------~-~ 410 (767)
-+ -++.+|++.++++|+++|++|++|+.++.+...++.+ .++.+..+.+-..+..++.+.+++..| . .
T Consensus 328 ~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~ 406 (762)
T KOG0474|consen 328 GPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSI 406 (762)
T ss_pred CccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCc
Confidence 11 2367899999999999999999999997777665554 222232233333333344444433322 0 0
Q ss_pred c-------c--C-CHH------------HHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHH
Q 004220 411 L-------Y--W-GFE------------NVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGA 468 (767)
Q Consensus 411 ~-------g--~-G~~------------~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa 468 (767)
. . . -|+ .+..++++++ +.++...|..+++.-++++..|+|.-.|.|.|.|++.+||
T Consensus 407 ~~~~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~--~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GA 484 (762)
T KOG0474|consen 407 TEGQCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPT--NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGA 484 (762)
T ss_pred ccccCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCC--CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhH
Confidence 0 0 0 133 3344554443 5577778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 004220 469 ATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWF 548 (767)
Q Consensus 469 ~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v 548 (767)
+.|+++|.++...+ .++|+.||++|+||+++|++||++|.+||++|+| +..+++|+|++-++|+++
T Consensus 485 a~GRlvg~~l~~~~-------------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~V 550 (762)
T KOG0474|consen 485 AYGRLVGMLLGSYT-------------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTV 550 (762)
T ss_pred HHHHHHHHHHHHhh-------------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHH
Confidence 99999999998643 3689999999999999999999999999999999 667999999999999999
Q ss_pred HhhhccCcchhhhhHHhhhccccccchhhhccccccCCCcchhhcccccccccccccccccccccchhhhhhhccCcccc
Q 004220 549 TSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSE 628 (767)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~l~~~~~~~~~L~~~~~~l~l~d~~~~~~~~l~~~~V~d 628 (767)
.+.+ ++++||.... .++.|. + ..+.+..+++++++|
T Consensus 551 GD~F--NegiYd~~i~----------LkgvP~-----------------L---------------e~~pe~~mr~L~a~e 586 (762)
T KOG0474|consen 551 GDSF--NEGIYDIIIQ----------LKGVPF-----------------L---------------EWEPEPYMRNLTAGE 586 (762)
T ss_pred Hhhh--hhhhHHHhhh----------ccCCcc-----------------c---------------cCCCchHhhhhhHhh
Confidence 9865 8999998652 233221 1 113356789999999
Q ss_pred ccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC-----CcEEEEEehhhHHHHHHHHhhhcc---------------
Q 004220 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-----NILIGLLTLGDIEEFSKYAQAKTS--------------- 688 (767)
Q Consensus 629 vM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~-----g~lvGiVt~~dL~~~l~~~~~~~~--------------- 688 (767)
+|++++++++.-+.+..+.+.++.+.|+.+||+|+. +++.|+|-++++...+++....++
T Consensus 587 v~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~ 666 (762)
T KOG0474|consen 587 VMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTF 666 (762)
T ss_pred hccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCH
Confidence 999999999999999999999999999999999962 578999999999988765322110
Q ss_pred --------cccccc-----hhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHH
Q 004220 689 --------RSKKLL-----VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRES 755 (767)
Q Consensus 689 --------~~~~~~-----V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~D 755 (767)
..++.. .+-.++-++.+++.|++|.+++++..+..+|++.+++++.||++ .++++|++||+|
T Consensus 667 ~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-----~~~~~gilTR~D 741 (762)
T KOG0474|consen 667 RDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-----TNRVVGILTRKD 741 (762)
T ss_pred HHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC-----CCceeEEEehhh
Confidence 011111 11122224567779999999999999999999999999999997 778899999999
Q ss_pred HHHHhh
Q 004220 756 IILACR 761 (767)
Q Consensus 756 Il~~~~ 761 (767)
+.+...
T Consensus 742 ~~~~~~ 747 (762)
T KOG0474|consen 742 LARYRI 747 (762)
T ss_pred hhhHHH
Confidence 986543
No 4
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=8.3e-60 Score=525.88 Aligned_cols=411 Identities=24% Similarity=0.342 Sum_probs=331.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004220 90 GVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDD 169 (767)
Q Consensus 90 ~~~l~~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~ 169 (767)
+++++++++|+++|+++.+|+++++++++++++.... .+....+...+| +.+++|++||+++|+++++.... ..
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~--~~ 76 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSG---SLVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKF--TQ 76 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---chhhcccccchH-HHHHHHHHHHHHHHHHHHHHccc--cc
Confidence 5688899999999999999999999999876653211 111111111245 57889999999999887543221 12
Q ss_pred CCCcccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHH
Q 004220 170 DDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGK 249 (767)
Q Consensus 170 ~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga 249 (767)
..+++++++++.... ++..+.+..+.|.+++++++++|+|+|||||++|+|+
T Consensus 77 ~~~~g~~~vi~av~~----------------------------~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa 128 (418)
T PRK01610 77 QRPHAPTDYMEALQT----------------------------DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAA 128 (418)
T ss_pred ccCCCcHHHHHHHHc----------------------------CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHH
Confidence 223346665543211 1122344678999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHHhh
Q 004220 250 SIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329 (767)
Q Consensus 250 ~ig~~~~~~~~~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~ 329 (767)
++|++++|+++ +++++|.+++||+|||+|++||||++|++|++|++..+ ++++.+.+ +++++++|+.+++.
T Consensus 129 ~~g~~~~~~~~-~~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~-------~~~~~~~p-~~ias~~a~~v~~~ 199 (418)
T PRK01610 129 LAASCFAQRFT-PRQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGT-------LMLASLGP-VVISAVVALLTTNL 199 (418)
T ss_pred HHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-------hhHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999998 67889999999999999999999999999999998754 34456655 67899999999998
Q ss_pred hcCCC-CccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhc
Q 004220 330 GLGSE-PAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFP 408 (767)
Q Consensus 330 ~~g~~-~~f~~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~P 408 (767)
+.|.+ +.|.++.....+..++++++++|+++|++|.+|+++..+.+++++ +.+.+.++++.++|+++|++.+++|
T Consensus 200 ~~g~~~~~~~i~~~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~----~~~~~~~~~~~lggli~g~l~~~~p 275 (418)
T PRK01610 200 LNGSDALLYNVQLSVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFV----SLKLAPPWQLALGGLIVGLLSLFTP 275 (418)
T ss_pred HcCCCCCeeecCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccccchhHHHHHHHHHHHHHHHHhh
Confidence 87754 678887654456778999999999999999999998876655443 3344566789999999999999999
Q ss_pred ccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCc
Q 004220 409 EILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPT 488 (767)
Q Consensus 409 ~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~ 488 (767)
+.+|+|++.++.+++++ .....++.++++|+++|++|+|+|++||.|+|++++||++|+++|++++..++.
T Consensus 276 ~~~G~G~~~i~~~~~~~-----~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~---- 346 (418)
T PRK01610 276 AVWGNGYSVVQSFLTAP-----PLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPD---- 346 (418)
T ss_pred HHhCCcHHHHHHHHcCC-----hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 99999999998887654 234455667899999999999999999999999999999999999999876553
Q ss_pred cccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCcchhhhhH
Q 004220 489 IHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKV 563 (767)
Q Consensus 489 ~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v~~~~~~~~~~~~~~~ 563 (767)
....+..|+++||+|++++++|+|+|++++++|+||+++.++|+|++|++|+++++ .+.++++|+...
T Consensus 347 ------~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~-~~~~~siy~~~~ 414 (418)
T PRK01610 347 ------GEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISR-TLRRDSIYRQHT 414 (418)
T ss_pred ------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH-HhCCCCchHHHH
Confidence 12346889999999999999999999999999999999999999999999998875 556888988643
No 5
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.1e-57 Score=503.31 Aligned_cols=384 Identities=26% Similarity=0.354 Sum_probs=320.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 004220 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (767)
Q Consensus 99 G~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~~~~~~i~~v 178 (767)
|+++|+++.+|+.+++++++++++.... .+.. .....+|++.+++|++||+++++++++.+. .++++||+
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~---~~~~-~~~~~~~~~~~~~~~~ggl~~~l~~~~~~~------~g~gi~~v 70 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEG---SFLT-GVAAVSPIRRALSLTVGGLIAGLGWYLLRR------KGKKLVSI 70 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccc---cchh-hhccCChHHHHHHHHHHHHHHHHHHHHHhc------cCCCcccH
Confidence 6889999999999999999999875321 1111 111234556788999999999988654321 24568887
Q ss_pred cccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 004220 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (767)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~ig~~~~~~ 258 (767)
++.... +...++++.+.|.+++++++++|+|+|||||++|+|+++|++++|+
T Consensus 71 ~~~~~~----------------------------~~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~ 122 (388)
T cd01033 71 KQAVRG----------------------------KKRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDW 122 (388)
T ss_pred HHHhcC----------------------------CCCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHH
Confidence 753211 1112344567899999999999999999999999999999999999
Q ss_pred hcCCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHHhhhcCCCCccc
Q 004220 259 FDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFK 338 (767)
Q Consensus 259 ~~~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~~~f~ 338 (767)
++++++++|.+++||+|||++|+||||++|++|++|+++.++ +.+.+.+ +++++++|+++++.++|++|.|.
T Consensus 123 ~~~~~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~-------~~~~~~~-~~~as~~a~~v~~~~~g~~~~f~ 194 (388)
T cd01033 123 LGLTVADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTI-------SLRSVVA-ALATSAIAAAVASLLKGDHPIYD 194 (388)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-------cHHHHHH-HHHHHHHHHHHHHHhCCCCceee
Confidence 999999999999999999999999999999999999997753 2345544 68899999999999999999999
Q ss_pred cCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHH
Q 004220 339 VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENV 418 (767)
Q Consensus 339 ~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~P~~~g~G~~~i 418 (767)
+++.+. ++.++++++++|+++|+++.+|++++.+..+++ ++. .+.++++.+++++++++.+++|+.+|+|++.+
T Consensus 195 ~~~~~~-~~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~----~~~-~~~~~~~~l~gl~~g~~~~~~p~~~G~G~~~i 268 (388)
T cd01033 195 IPPMQL-STPLLIWALLAGPVLGVVAAGFRRLSQAARAKR----PKG-KRILWQMPLAFLVIGLLSIFFPQILGNGRALA 268 (388)
T ss_pred cCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccc-cchHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 887664 467888999999999999999999887766543 222 23456788999999999999999999999999
Q ss_pred HHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccc
Q 004220 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (767)
Q Consensus 419 ~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (767)
+.+++++ .+...++.++++|+++|++|+|+|++||.|+|++++||++|+.+|++++..+|+ .+
T Consensus 269 ~~~~~~~-----~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~------------~~ 331 (388)
T cd01033 269 QLAFSTT-----LTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPP------------LS 331 (388)
T ss_pred HHHHcCC-----chHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCc------------cc
Confidence 9988764 355566778999999999999999999999999999999999999999875543 46
Q ss_pred hhHHHHHHHHHHHHHhcCchHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHhh
Q 004220 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ-DYRIVLPLLGAVGLSSWFTSG 551 (767)
Q Consensus 499 ~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg-~~~~~lP~~~a~~va~~v~~~ 551 (767)
+..|+++||+|++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.
T Consensus 332 ~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~ 385 (388)
T cd01033 332 IAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRF 385 (388)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999 999999999999999988753
No 6
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=1.7e-55 Score=496.61 Aligned_cols=413 Identities=25% Similarity=0.393 Sum_probs=328.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 004220 93 ISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDD 172 (767)
Q Consensus 93 l~~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~~~~ 172 (767)
++++++|+++|+++.+|+++++++++++++..+.. ..++ ...|...++++.+++++.+++.+ +. .+...|
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~~l~~--~~--~p~~~G 71 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASV-----ADNG-LLLWIVAFLISAVLAMIGYFLVR--RF--APEAGG 71 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccc-hHHHHHHHHHHHHHHHHHHHHHH--hc--CcccCC
Confidence 57899999999999999999999999987643210 0011 01122123334444444444432 12 233446
Q ss_pred cccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHH
Q 004220 173 DDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIA 252 (767)
Q Consensus 173 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~ig 252 (767)
+++||+++..... +.....+..+.|++++++++++|+|+|||||++|+|+++|
T Consensus 72 sGi~~i~~~l~~~---------------------------~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig 124 (438)
T PRK05277 72 SGIPEIEGALEGL---------------------------RPVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIG 124 (438)
T ss_pred CCHHHHHHHHcCC---------------------------CccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Confidence 6789887532110 0111123457899999999999999999999999999999
Q ss_pred HHHHhhhcC-CchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHHhhhc
Q 004220 253 KGVGNLFDR-RPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGL 331 (767)
Q Consensus 253 ~~~~~~~~~-~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~ 331 (767)
++++++++. ++.++|.+++||+|||++++||||++|++|++|++..+.. ++.+++.+ +++++++|+++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~-----~~~~~~~~-~~~a~~~a~~v~~~~~ 198 (438)
T PRK05277 125 RMVLDIFRLRSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFR-----YSLISIKA-VFIGVIMATIVFRLFN 198 (438)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhcc-----ccHHHHHH-HHHHHHHHHHHHHHhc
Confidence 999999998 8888999999999999999999999999999998864310 23344444 6789999999999988
Q ss_pred CCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccc
Q 004220 332 GSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEIL 411 (767)
Q Consensus 332 g~~~~f~~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~P~~~ 411 (767)
|+++.|+++.++..+..+++.++++|++||++|.+|++++.+.+++++++.++.+.+..+...++|++++++.+++|+..
T Consensus 199 g~~~~~~~~~~~~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~~ 278 (438)
T PRK05277 199 GEQAVIEVGKFSAPPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAAV 278 (438)
T ss_pred CCCceEeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999988876655677899999999999999999999998888777665433222222344677888888889999999
Q ss_pred cCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCcccc
Q 004220 412 YWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF 491 (767)
Q Consensus 412 g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~ 491 (767)
|+|++.++..++++ .+...++.++++|+++|++|+|+|++||.|+|++++||++|+.+|++++.++|.
T Consensus 279 g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~------- 346 (438)
T PRK05277 279 GGGFNLIPIALAGN-----FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQ------- 346 (438)
T ss_pred CChHHHHHHHHcCC-----chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------
Confidence 99999999888764 456667778999999999999999999999999999999999999999887664
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCcchhhhhHH
Q 004220 492 SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVA 564 (767)
Q Consensus 492 ~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v~~~~~~~~~~~~~~~~ 564 (767)
...+|..|+++||+|++++++|+|++++++++|+||+++.++|+++++++|+++++ ++.++++|+....
T Consensus 347 ---~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~-~~~~~~iy~~~l~ 415 (438)
T PRK05277 347 ---YHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQ-FLGGKPIYSALLE 415 (438)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH-HhCCCChHHHHHH
Confidence 23578999999999999999999999999999999999999999999999998775 5677899998654
No 7
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=1.1e-55 Score=493.33 Aligned_cols=400 Identities=27% Similarity=0.448 Sum_probs=331.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 004220 98 VGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQ 177 (767)
Q Consensus 98 vG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~~~~~~i~~ 177 (767)
+|+++|+++.+|++.++++++++++..+.. ... ...|++.+++|.++|++++++.++. . +...|+++|+
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~g~~~~~l~~~~--~--p~~~g~G~~~ 69 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFA-----ANN--PPLLLVLPLISAVLGLLAGWLVKKF--A--PEAKGSGIPQ 69 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhc-----ccc--cHHHHHHHHHHHHHHHHHHHHHHhc--C--CccCCCCHHH
Confidence 588999999999999999999998743211 011 1234445667888888888875431 2 2334556888
Q ss_pred ccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHh
Q 004220 178 VQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGN 257 (767)
Q Consensus 178 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~ig~~~~~ 257 (767)
+++....+ ......++.+.|++++++++++|+|+|||||++|+|+++|+++++
T Consensus 70 v~~~l~~~---------------------------~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~ 122 (402)
T cd01031 70 VEGVLAGL---------------------------LPPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK 122 (402)
T ss_pred HHHHHcCC---------------------------CCcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH
Confidence 87532111 011234567899999999999999999999999999999999999
Q ss_pred hhcCCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHHhhhcCCCCcc
Q 004220 258 LFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAF 337 (767)
Q Consensus 258 ~~~~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~~~f 337 (767)
+++.++.++|.+++||+|||++++||||++|++|++|++..++ +.+.+. ++++++++|+++++.++++++.|
T Consensus 123 ~~~~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~-------~~~~~~-~~~~a~~~a~~v~~~~~~~~~~~ 194 (402)
T cd01031 123 WFKTSPEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSF-------SPLALL-TALVASIAADFVSRLFFGLGPVL 194 (402)
T ss_pred HhcCCHHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhC-------CHHHHH-HHHHHHHHHHHHHHHHcCCCceE
Confidence 9999888999999999999999999999999999999886542 223444 46889999999999889999999
Q ss_pred ccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHH
Q 004220 338 KVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFEN 417 (767)
Q Consensus 338 ~~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~P~~~g~G~~~ 417 (767)
.++.++.+++.|+++++++|+++|++|.+|++...+..+++++.+ +.+.++++.+++++++++.+++|+.+|+|++.
T Consensus 195 ~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~---~~~~~~~~~l~gl~~~~~~~~~p~~~g~G~~~ 271 (402)
T cd01031 195 SIPPLPALPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK---KLPRELRVLLPGLLIGPLGLLLPEALGGGHGL 271 (402)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCChhHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 888766557789999999999999999999998887776655432 34567889999999999999999999999999
Q ss_pred HHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCcccccccccc
Q 004220 418 VDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVA 497 (767)
Q Consensus 418 i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~ 497 (767)
++.+++++ .+...++.+++.|+++|++|+++|++||.|+|++++||++|+++|++++..++. ...
T Consensus 272 i~~~~~~~-----~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~----------~~~ 336 (402)
T cd01031 272 ILSLAGGN-----FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPI----------PIS 336 (402)
T ss_pred HHHHHcCC-----chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCc----------ccc
Confidence 88887653 466677788999999999999999999999999999999999999999977653 246
Q ss_pred chhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCcchhhhh
Q 004220 498 SPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETK 562 (767)
Q Consensus 498 ~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v~~~~~~~~~~~~~~ 562 (767)
+|..|+++||+|++++++|+|++++++++|+||+++.++|+|+++++|+++++ .+.++++||..
T Consensus 337 ~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~-~~~~~siY~~~ 400 (402)
T cd01031 337 APATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVAD-LLGGKPIYEAL 400 (402)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH-HhCCCChhHHH
Confidence 79999999999999999999999999999999999999999999999998875 44588888864
No 8
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=1.8e-55 Score=495.28 Aligned_cols=409 Identities=22% Similarity=0.278 Sum_probs=321.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 004220 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (767)
Q Consensus 99 G~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~~~~~~i~~v 178 (767)
|+++|+++..+++.++++.+++.+.. +|..++++++++|++++++.+. . .+...|++|||+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~i~~~l~~~--~--~p~a~GsGIp~v 61 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC---------------NYIIYVLLALLFAFIAVLLVKV--V--APYAAGSGIPEI 61 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHh--c--CccccCCCHHHH
Confidence 78999999999999999998876521 2333466788888988888632 1 234556789999
Q ss_pred cccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 004220 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (767)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~ig~~~~~~ 258 (767)
++... ++ +..+..+.++.+.|++++++++++|+|+|||||++|+|+++|++++|+
T Consensus 62 ~~~l~--g~-----------------------~~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~ 116 (445)
T cd03684 62 KTILS--GF-----------------------IIRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRL 116 (445)
T ss_pred HHHHc--Cc-----------------------cccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHH
Confidence 75311 11 112344466789999999999999999999999999999999999998
Q ss_pred hc---CCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHHhhh--c--
Q 004220 259 FD---RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVG--L-- 331 (767)
Q Consensus 259 ~~---~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~--~-- 331 (767)
|+ .++++||++++||+|||++|+||||++|++|++|++..++ +.+++.+ +++++++|+++.+.+ +
T Consensus 117 ~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~-------~~~~l~~-~~~as~~a~~v~~~~~~~~~ 188 (445)
T cd03684 117 FPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYF-------PLKTLWR-SFFCALVAAFTLKSLNPFGT 188 (445)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhc-------cHHHHHH-HHHHHHHHHHHHHHhcccCC
Confidence 74 5888999999999999999999999999999999997642 3355554 688999999988864 2
Q ss_pred CCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccc
Q 004220 332 GSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEIL 411 (767)
Q Consensus 332 g~~~~f~~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~P~~~ 411 (767)
++...|+++....++..|+++++++|++||++|.+|++++.++.+++++... +.++++++.++++++++++++.|+..
T Consensus 189 ~~~~~f~~~~~~~~~~~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~ 266 (445)
T cd03684 189 GRLVLFEVEYDRDWHYFELIPFILLGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTR 266 (445)
T ss_pred CCceEEeccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHc
Confidence 3334455543222356789999999999999999999998887776654421 23457789999999999999999999
Q ss_pred cCCHHHHHHHHccCCC--------------ccC--ccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHH
Q 004220 412 YWGFENVDILLESRPF--------------VKG--LTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYG 475 (767)
Q Consensus 412 g~G~~~i~~ll~~~~~--------------~~~--~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g 475 (767)
++|++.++.++++... ..+ .+...++.++++|+++|++|+++|+|||.|+|++++||++|+++|
T Consensus 267 ~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g 346 (445)
T cd03684 267 LDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVG 346 (445)
T ss_pred cchhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHH
Confidence 9999999988864210 001 123456667899999999999999999999999999999999999
Q ss_pred HHHHHhh---hcCCCcccc--ccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHh
Q 004220 476 KFINFAI---AQSNPTIHF--SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTS 550 (767)
Q Consensus 476 ~~~~~~~---~~~~~~~~~--~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v~~ 550 (767)
++++.+. |+.. .+.. +.....+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++
T Consensus 347 ~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~ 425 (445)
T cd03684 347 ILVEQLAYSYPDSI-FFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVAD 425 (445)
T ss_pred HHHHHHHhhCCccc-ccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHH
Confidence 9998653 2210 0000 00013578999999999999999999999999999999999999999999999998875
Q ss_pred hhccCcchhhhhH
Q 004220 551 GQMRRRDVKETKV 563 (767)
Q Consensus 551 ~~~~~~~~~~~~~ 563 (767)
.+.++++||...
T Consensus 426 -~~~~~siY~~~l 437 (445)
T cd03684 426 -AIGKEGIYDAHI 437 (445)
T ss_pred -HhCCCCHHHHHH
Confidence 556789999765
No 9
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-54 Score=480.61 Aligned_cols=364 Identities=32% Similarity=0.480 Sum_probs=304.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHH
Q 004220 143 RVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPL 222 (767)
Q Consensus 143 ~~~l~p~~ggll~gll~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 222 (767)
+..++|..+|++++. +.+....|+.. |++++++++.... .+.....+..+
T Consensus 65 ~~~l~~~~~gl~~g~-~~~~~~~p~~~--g~Gi~~~i~a~~~---------------------------~~~~~~~~~~~ 114 (443)
T COG0038 65 LLPLVPALGGLLVGA-LLVYKFAPEAR--GSGIPQAIEALHG---------------------------RKGRISPRVLP 114 (443)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhCcccc--CCChhHHHHHHhc---------------------------CCCcccHHHHH
Confidence 467788999999995 22333333333 4568887753211 12233445567
Q ss_pred HHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhhhcCCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhcccccc
Q 004220 223 LKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSA 302 (767)
Q Consensus 223 ~k~l~~~l~l~~G~s~G~EgP~v~iga~ig~~~~~~~~~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~ 302 (767)
+|++++.+++++|+|+|||||++|+|+++|+.++++++.++.++|.+++||+|||+||+||||++|++|++|+++.++
T Consensus 115 vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~-- 192 (443)
T COG0038 115 VKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLSREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRF-- 192 (443)
T ss_pred HHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhc--
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhhhcCCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004220 303 ADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQ 382 (767)
Q Consensus 303 ~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~ 382 (767)
++..++.+ +++++++|+.+.+...+.++.+.+++.+..++++++.++++|+++|++|.+|.++.... ++++
T Consensus 193 ----~~~~~l~p-~~vaa~va~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~----~~~~ 263 (443)
T COG0038 193 ----LEYRALVP-VLVAAVVALLVAGLFGGPHFLLPIVTTPHMSLWDLLLYLVLGIIAGLFGVLLSRLLALS----RRFF 263 (443)
T ss_pred ----ccHHHHHH-HHHHHHHHHHHHHHcCCCCceeeccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 23455555 68899999999998878677777766665678899999999999999999999987544 4455
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceech
Q 004220 383 KDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAP 462 (767)
Q Consensus 383 ~~~~~~~~~~~~lggl~vg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~P 462 (767)
++.+.+.++++++++++++++.+++|+.+|+|+..++...+++ .....+..+++.|+++|++|+|+|+|||+|+|
T Consensus 264 ~~~~~~~~~~~~~~g~l~g~~~l~~P~~lg~G~~~~~~~~~~~-----~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~P 338 (443)
T COG0038 264 RRLPLPPLLRPALGGLLVGALGLLFPEVLGNGYGLIQLALAGE-----GGLLVLLLLFLLKLLATLLSYGSGAPGGIFAP 338 (443)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHhchhhhCCCccHHHHHHccC-----ccHHHHHHHHHHHHHHHHHHHhcCCCcceehH
Confidence 6666677889999999999999999999999999998888765 23322677899999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHH
Q 004220 463 SLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAV 542 (767)
Q Consensus 463 sl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~ 542 (767)
++++|+++|.++|.+++..++. ...++..|+++||+|++++++|+|+|++++++||||+++.++|+|++|
T Consensus 339 sl~iGa~lG~~~g~~~~~~~~~----------~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~ 408 (443)
T COG0038 339 SLFIGAALGLAFGALLGLLFPP----------SILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIAC 408 (443)
T ss_pred HHHHHHHHHHHHHHHHHhhcCc----------cccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHH
Confidence 9999999999999999987664 134678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCcchhhhhH
Q 004220 543 GLSSWFTSGQMRRRDVKETKV 563 (767)
Q Consensus 543 ~va~~v~~~~~~~~~~~~~~~ 563 (767)
++++.+++.. ..+++|+...
T Consensus 409 ~ia~~~~~~~-~~~~~~~~~~ 428 (443)
T COG0038 409 LIAYLVSRLL-GGRPIYTQLL 428 (443)
T ss_pred HHHHHHHHHh-CCCcHHHHHH
Confidence 9999887655 4577777654
No 10
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=6.1e-54 Score=476.95 Aligned_cols=387 Identities=28% Similarity=0.370 Sum_probs=311.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccC
Q 004220 103 GIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKS 182 (767)
Q Consensus 103 Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~~~~~~i~~v~~~~ 182 (767)
|+++..|+++++++++++++... . .+|+..++.|+.|+++.+++.++ .+...|+++||+++..
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~p~~~~~~~~~~~~~-----~p~~~gsGi~~v~~~~ 63 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTA--------T----HPWLPLLLTPAGFALIAWLTRRF-----FPGAAGSGIPQVIAAL 63 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH--------h----chHHHHHHHHHHHHHHHHHHHhh-----CCCCCCCCHHHHHHHH
Confidence 57889999999999999875321 1 24554567788877777766432 2233466799988632
Q ss_pred CCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhhhcCC
Q 004220 183 YPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRR 262 (767)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~ig~~~~~~~~~~ 262 (767)
..... .+..+..+.++.+.|++++++++++|+|+|||||++|+|+++|++++|++++.
T Consensus 64 ~~~~~----------------------~~~~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~ 121 (390)
T cd01034 64 ELPSA----------------------AARRRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKW 121 (390)
T ss_pred ccccc----------------------ccccccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccC
Confidence 11000 01122445667899999999999999999999999999999999999999985
Q ss_pred -chhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHHhhhcCCCCccccCc
Q 004220 263 -PRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFKVPE 341 (767)
Q Consensus 263 -~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~~~f~~~~ 341 (767)
++++|++++||+|||++++||||++|++|++|++..++ ..+...+ +++++++|+++++.++|+++.|.+++
T Consensus 122 ~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~-------~~~~~~~-~~~~~~~a~~~~~~~~g~~~~f~~~~ 193 (390)
T cd01034 122 GGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDF-------ELRFSGL-VLLAVIAAGLVSLAVLGNYPYFGVAA 193 (390)
T ss_pred chHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhh-------hHHHHHH-HHHHHHHHHHHHHHHcCCCCccCCCC
Confidence 68999999999999999999999999999999997642 2334443 56788889998988899999998886
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhHHHHHHHHHHHHHHHHhc-ccccCCHHHHH
Q 004220 342 YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD-NGIPKAVFPVMGGLAVGLIALMFP-EILYWGFENVD 419 (767)
Q Consensus 342 ~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~lggl~vg~i~~~~P-~~~g~G~~~i~ 419 (767)
.+..++.+++.++++|++||++|.+|++.+.++.+++++.++. .+.+.++++.++|++++++.+++| +..|+|++.++
T Consensus 194 ~~~~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~G~G~~~i~ 273 (390)
T cd01034 194 VALPLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLTFGTGYLQAR 273 (390)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCccccCcHHHHH
Confidence 5544677888999999999999999999988888777664322 223345667788888888887775 78889999999
Q ss_pred HHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccch
Q 004220 420 ILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASP 499 (767)
Q Consensus 420 ~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 499 (767)
..++++. . ....+.++|+++|.+|+++|+|||+|+|++++||++|++++++++. .++
T Consensus 274 ~~~~~~~---~----~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~~----------------~~~ 330 (390)
T cd01034 274 AALEGGG---G----LPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGS----------------VSQ 330 (390)
T ss_pred HHHhCCC---c----ccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhcC----------------CCc
Confidence 8887641 1 2345678999999999999999999999999999999999987642 367
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCcchhh
Q 004220 500 QAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKE 560 (767)
Q Consensus 500 ~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v~~~~~~~~~~~~ 560 (767)
..|+++||+|++++++|+|+|++++++|+|++++.++|+|+++++|+++++.+ ..+++||
T Consensus 331 ~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~-~~~~iY~ 390 (390)
T cd01034 331 GALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLV-CPEPLYH 390 (390)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHh-CCCCCCC
Confidence 89999999999999999999999999999999999999999999999887654 5677775
No 11
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=5.6e-54 Score=485.32 Aligned_cols=398 Identities=20% Similarity=0.294 Sum_probs=294.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004220 87 GNSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALS 166 (767)
Q Consensus 87 ~~~~~~l~~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~ 166 (767)
..+..|++++++|+++|+++.+|+.+++++++++++..- .+.........|..++++++++|++++++.++.
T Consensus 28 ~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~---- 99 (466)
T cd03685 28 YEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVK----NYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYI---- 99 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 345567888999999999999999999999999765421 011111111234434567889999999886532
Q ss_pred CCCCCCcccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHH
Q 004220 167 LDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVE 246 (767)
Q Consensus 167 ~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~ 246 (767)
.+...|+++||+++. .++. +..+..++++.+.|++++++++++|+|+|||||++|
T Consensus 100 ~p~a~GsGip~v~~~--l~g~-----------------------~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~ 154 (466)
T cd03685 100 APTAAGSGIPEVKGY--LNGV-----------------------KIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIH 154 (466)
T ss_pred CcccCCCCHHHHHHH--HcCc-----------------------CccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcch
Confidence 233456779998862 1111 112233456778999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----------hc--CCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhH
Q 004220 247 IGKSIAKGVGNL-----------FD--RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTT 313 (767)
Q Consensus 247 iga~ig~~~~~~-----------~~--~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~ 313 (767)
+|+++|++++++ ++ .+++++|++++||+|||+|++||||++|++|++|++..++.. +..
T Consensus 155 iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~-------~~~- 226 (466)
T cd03685 155 IGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQ-------ALT- 226 (466)
T ss_pred HHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcch-------hHH-
Confidence 999999999973 23 366788999999999999999999999999999998654221 111
Q ss_pred HHHHHHHHHHHHHHhhh---cCC--CCcc--------ccCc-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004220 314 SMVILSAVIASVVSEVG---LGS--EPAF--------KVPE-YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVD 379 (767)
Q Consensus 314 ~~~~~aa~~a~~v~~~~---~g~--~~~f--------~~~~-~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~ 379 (767)
...++++++|+++++.+ .+. ...| ..+. ...+++.|+++++++|++||++|.+|++.+.++.++++
T Consensus 227 ~~~l~~s~ias~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~ 306 (466)
T cd03685 227 WRTFFSSMIVTFTLNFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRK 306 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344555555544432 111 1222 2221 12235678899999999999999999999888876655
Q ss_pred HHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccce
Q 004220 380 NLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGY 459 (767)
Q Consensus 380 ~~~~~~~~~~~~~~~lggl~vg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~ 459 (767)
+..+. +++.+ ++++++++++...++. ...+..++++|+++|++|+|+|+|||+
T Consensus 307 ~~~~~---~~~~~-~l~~~lv~~~~~~~~~-----------------------~~~l~~~~~~k~l~t~lt~gsG~~GGi 359 (466)
T cd03685 307 RINHK---GKLLK-VLEALLVSLVTSVVAF-----------------------PQTLLIFFVLYYFLACWTFGIAVPSGL 359 (466)
T ss_pred Hhccc---cchhH-HHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 43221 22233 4555555554332221 013455667899999999999999999
Q ss_pred echHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHH
Q 004220 460 YAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLL 539 (767)
Q Consensus 460 f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~ 539 (767)
|+|++++||++|+++|++++.+++. ...+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|
T Consensus 360 f~Psl~iGA~~G~~~g~~~~~~~~~----------~~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l~pl~ 429 (466)
T cd03685 360 FIPMILIGAAYGRLVGILLGSYFGF----------TSIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIM 429 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccc----------cCCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhHHHHH
Confidence 9999999999999999999876542 235789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCcchhhhhHH
Q 004220 540 GAVGLSSWFTSGQMRRRDVKETKVA 564 (767)
Q Consensus 540 ~a~~va~~v~~~~~~~~~~~~~~~~ 564 (767)
+++++|+++++.+ ++++||....
T Consensus 430 ia~~iA~~va~~~--~~siY~~~l~ 452 (466)
T cd03685 430 LVLMIAKWVGDYF--NEGIYDIIIQ 452 (466)
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHH
Confidence 9999999988764 4799998763
No 12
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=1.3e-52 Score=466.53 Aligned_cols=383 Identities=39% Similarity=0.594 Sum_probs=319.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 004220 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (767)
Q Consensus 99 G~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~~~~~~i~~v 178 (767)
|+++|+++.+|++.+++.++++|+..+.... . ...+|++.++.|++||++++++.++.+ + ..+++++++
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~g~~~v~l~~~~~~---~--~~g~G~~~v 69 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELA-----A-GSLSPLYILLVPVIGGLLVGLLVRLLG---P--ARGHGIPEV 69 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccc-----c-ccccHHHHHHHHHHHHHHHHHHHHHhC---c--ccCCChHHH
Confidence 6889999999999999999999986442210 0 112455577889999999998875421 1 345567887
Q ss_pred cccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 004220 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (767)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~ig~~~~~~ 258 (767)
++.... .++....+..+.|++++.+++++|+|+|+|||++|+|+++|++++++
T Consensus 70 ~~~~~~---------------------------~~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~ 122 (383)
T cd00400 70 IEAIAL---------------------------GGGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRR 122 (383)
T ss_pred HHHHHh---------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 643110 01122345678999999999999999999999999999999999999
Q ss_pred hcCCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHHhhhcCCCCccc
Q 004220 259 FDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFK 338 (767)
Q Consensus 259 ~~~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~~~f~ 338 (767)
++.++.++|.+++||++||++++||||++|++|++|++..++. .+.+. ++++++++++++++.+.+.++.|.
T Consensus 123 ~~~~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~-------~~~~~-~~~~~~~~a~~v~~~~~~~~~~~~ 194 (383)
T cd00400 123 LRLSRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYS-------VASLI-PVLLASVAAALVSRLLFGAEPAFG 194 (383)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhcc-------HHHHH-HHHHHHHHHHHHHHHHcCCCCeee
Confidence 9998889999999999999999999999999999999976532 23344 468899999999999889989888
Q ss_pred cCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHH
Q 004220 339 VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENV 418 (767)
Q Consensus 339 ~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~P~~~g~G~~~i 418 (767)
++.....+..+++.++++|+++|++|.+|+++..++++++++ .+.++++++++++++++++.+++|+..|+|++.+
T Consensus 195 ~~~~~~~~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~----~~~~~~~~~~i~gll~~~~~~~~p~~~g~G~~~~ 270 (383)
T cd00400 195 VPLYDPLSLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRR----LPIPPWLRPALGGLLLGLLGLFLPQVLGSGYGAI 270 (383)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 876444567889999999999999999999988877655443 2345678899999999999999999999999998
Q ss_pred HHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccc
Q 004220 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (767)
Q Consensus 419 ~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (767)
+...+++ .+...+...++.|+++|++|+++|++||+|+|++++||++|+.++++++.++|. +..+
T Consensus 271 ~~~~~~~-----~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~----------~~~~ 335 (383)
T cd00400 271 LLALAGE-----LSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPG----------LVAS 335 (383)
T ss_pred HHHHcCC-----hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCc----------ccCC
Confidence 8777654 455566778999999999999999999999999999999999999999987663 3467
Q ss_pred hhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 004220 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSS 546 (767)
Q Consensus 499 ~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~ 546 (767)
+..|+++||+|++++++|+|++++++++|+||+++.++|+++++++|+
T Consensus 336 ~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 336 PGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999998763
No 13
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=8.3e-53 Score=462.48 Aligned_cols=350 Identities=35% Similarity=0.570 Sum_probs=279.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHH
Q 004220 150 CGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAAC 229 (767)
Q Consensus 150 ~ggll~gll~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~ 229 (767)
++|+++++++++. .+...++++||+++.... .+...+.++.+.|+++++
T Consensus 1 ~~~~~~~~l~~~~----~p~~~g~Gi~~v~~~~~~---------------------------~~~~~~~~~~~~k~~~~~ 49 (355)
T PF00654_consen 1 IGGLLSGLLWKKF----APEAAGSGIPEVKAALRG---------------------------KSGRLPFRTLPVKFVGSI 49 (355)
T ss_dssp -HHHHHHHHHHHC-----GGGSB-SHHHHHHHCTT---------------------------SS---HHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHH----CCccCCCCHHHHHHHHhC---------------------------CCCCCCHHHHHHHHHHHH
Confidence 4678888886542 122345679998864221 111245667889999999
Q ss_pred HHHhcCCccCCchhHHHHHHHHHHHHHhhhcCCchh-hHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhh
Q 004220 230 ITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRRPRR-KVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSAS 308 (767)
Q Consensus 230 l~l~~G~s~G~EgP~v~iga~ig~~~~~~~~~~~~~-~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~ 308 (767)
+++++|+|+|||||++|+|++++++++|+++.++++ +|.+++||+|||+|++||||++|++|++|++..++ +
T Consensus 50 ~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~-------~ 122 (355)
T PF00654_consen 50 LSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDF-------S 122 (355)
T ss_dssp HHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCC-------S
T ss_pred HHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccc-------c
Confidence 999999999999999999999999999999977776 88899999999999999999999999999976543 3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCCccc-cCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004220 309 LAYTTSMVILSAVIASVVSEVGLGSEPAFK-VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI 387 (767)
Q Consensus 309 ~~~~~~~~~~aa~~a~~v~~~~~g~~~~f~-~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~ 387 (767)
.+.+.+ +++++++|+++++.+.++++.|. +++...+++.|+++++++|++||++|.+|++.+.++.+++++.. +.+.
T Consensus 123 ~~~~~~-~~~as~~a~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~ 200 (355)
T PF00654_consen 123 VRLLLP-ALVASIVATLVSRLLFGNHPIFGSVPQLFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKI 200 (355)
T ss_dssp TTTHHH-HHHHHHHHHHHHHHHHTSS-SS---TT-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCH
T ss_pred chhhHH-HHHHHHHHHHHHHHHcCcCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc
Confidence 345554 68899999999999999999998 87655557889999999999999999999999999988777664 2333
Q ss_pred chhHHHHHHHHHHHHHHHHhcc--cccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhH
Q 004220 388 PKAVFPVMGGLAVGLIALMFPE--ILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLF 465 (767)
Q Consensus 388 ~~~~~~~lggl~vg~i~~~~P~--~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~ 465 (767)
+++++++++|++++++.+++|+ .+|+|++.++.++++++ ..++...++.+++.|+++|.+|+++|++||.|+|+++
T Consensus 201 ~~~l~~~i~gl~~g~l~~~~p~~~~~g~G~~~i~~ll~~~~--~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~ 278 (355)
T PF00654_consen 201 PPILRPVIGGLVIGLLAFFFPEGSVLGSGYELIQSLLSGSP--PWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLF 278 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHSSGG-SGSSSSTTHHHHHCTT------S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHHcCCc--chhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHH
Confidence 4567999999999999999999 99999999999987642 1356778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHH
Q 004220 466 IGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLS 545 (767)
Q Consensus 466 iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va 545 (767)
+|+++|++++++++..+|+. ...+|..|+++||+|++++++|+|++++++++|+||++++++|+|+++++|
T Consensus 279 iGa~~G~~~~~~~~~~~~~~---------~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a 349 (355)
T PF00654_consen 279 IGAALGRLFGALLGSFFPGI---------SSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVA 349 (355)
T ss_dssp HHHHHHHHHHHHHHHH-GGG----------T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCc---------CCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999877641 123799999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 004220 546 SWFTS 550 (767)
Q Consensus 546 ~~v~~ 550 (767)
+++++
T Consensus 350 ~~v~~ 354 (355)
T PF00654_consen 350 YLVAR 354 (355)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 88764
No 14
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=1.2e-52 Score=469.26 Aligned_cols=388 Identities=22% Similarity=0.258 Sum_probs=299.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccc
Q 004220 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (767)
Q Consensus 99 G~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~~~~~~i~~v 178 (767)
|+++|+++..|+.+++++++++.+.+... ..++ ...|..+++.|++++++++++.++. .+...|++|||+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~----~p~a~GsGIp~v 70 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI-----PGSY-LLGYLMWVLWSVVLVLISSGICLYF----APQAAGSGIPEV 70 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc-----ccch-HHHHHHHHHHHHHHHHHHHHHHHhc----CcccCCCCHHHH
Confidence 67788999999999999988876543211 1111 1133334567888888877775421 233456779998
Q ss_pred cccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 004220 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (767)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~ig~~~~~~ 258 (767)
++... ++ +..+..++++.+.|++++++++++|+|+|||||++|+|+++|++++++
T Consensus 71 ~~~l~--g~-----------------------~~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~ 125 (416)
T cd01036 71 MAYLN--GV-----------------------HLPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQG 125 (416)
T ss_pred HHHHc--CC-----------------------cccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhh
Confidence 86311 10 112334566789999999999999999999999999999999999997
Q ss_pred hc-------------CCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHH
Q 004220 259 FD-------------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (767)
Q Consensus 259 ~~-------------~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~ 325 (767)
++ .+++++|++++||+|||++++||||++|++|++|++..++ +.++.. ++++++++|++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~-------~~~~~~-~~~~as~~a~~ 197 (416)
T cd01036 126 RSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFF-------PVRLAW-RVFFAALVSAF 197 (416)
T ss_pred cccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccc-------cHHHHH-HHHHHHHHHHH
Confidence 65 4677899999999999999999999999999999997653 234444 46788999999
Q ss_pred HHhhhcCCCCccc--------------cCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchh
Q 004220 326 VSEVGLGSEPAFK--------------VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD-NGIPKA 390 (767)
Q Consensus 326 v~~~~~g~~~~f~--------------~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~ 390 (767)
+.+.+.+..+.+. ++....++..|+++++++|++||++|.+|++++.++.+++++..+. .+.+++
T Consensus 198 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 277 (416)
T cd01036 198 VIQIYNSFNSGFELLDRSSAMFLSLTVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRV 277 (416)
T ss_pred HHHHhccccCCccccccccccceeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Confidence 9887665543332 2222223567899999999999999999999999888877654332 334567
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHH
Q 004220 391 VFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAAT 470 (767)
Q Consensus 391 ~~~~lggl~vg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~ 470 (767)
+++.+++++++.+.+ ...++.+++.|+++|.+|+++|+|||.|.|++++||++
T Consensus 278 ~~~~~~~~i~~~~~~---------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~ 330 (416)
T cd01036 278 LEPVLFTLIYSTIHY---------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAI 330 (416)
T ss_pred HHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 788899988887764 11345678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHh
Q 004220 471 GMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTS 550 (767)
Q Consensus 471 G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v~~ 550 (767)
|+++|++++.++|+..+..+ .....+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++
T Consensus 331 G~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~ 408 (416)
T cd01036 331 GRLVGLLVHRIAVAGIGAES--ATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVAD 408 (416)
T ss_pred HHHHHHHHHHHccccccccc--cCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHH
Confidence 99999999987764211100 0123678999999999999999999999999999999999999999999999999877
Q ss_pred hhccCcchhh
Q 004220 551 GQMRRRDVKE 560 (767)
Q Consensus 551 ~~~~~~~~~~ 560 (767)
.+ . +++||
T Consensus 409 ~~-~-~siY~ 416 (416)
T cd01036 409 AF-C-ESLYH 416 (416)
T ss_pred hh-C-CCCCC
Confidence 55 3 68876
No 15
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-53 Score=470.46 Aligned_cols=497 Identities=18% Similarity=0.256 Sum_probs=370.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 004220 92 IISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDD 171 (767)
Q Consensus 92 ~l~~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~~~ 171 (767)
|+...++|++++++.+.++.+|+.+++..-..... ....++ ...|+-+...|+.--++.+.+.++ + .+...
T Consensus 96 W~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~----~~~~~~-yl~yl~Wv~y~v~Li~fSA~f~h~---i-apQAv 166 (931)
T KOG0476|consen 96 WFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRE----LGSSHS-YLAYLSWVGYPVGLVLFSAGFCHY---I-APQAV 166 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchh-HHHHHHHHHHHHHHHHHHHHHHhe---e-ccccc
Confidence 77889999999999999999999887653221100 000011 011211122233222222322221 1 23456
Q ss_pred CcccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHH
Q 004220 172 DDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSI 251 (767)
Q Consensus 172 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~i 251 (767)
|+||||+|.... ++-.+...+.++++.|.++..+++|+|.++|+|||+|||++.+
T Consensus 167 GSGIPEmKtIlr-------------------------Gv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasiv 221 (931)
T KOG0476|consen 167 GSGIPEMKTILR-------------------------GVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIV 221 (931)
T ss_pred cCCChhHHHHHH-------------------------hhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHH
Confidence 788999996421 1234556677889999999999999999999999999999999
Q ss_pred HHHHHhhhc-------CCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHH
Q 004220 252 AKGVGNLFD-------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIAS 324 (767)
Q Consensus 252 g~~~~~~~~-------~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~ 324 (767)
++.++++.. -++.+..+++++|+|.|+|+.|.||++|++|++|++..++. .+|++. -++|+.+++
T Consensus 222 A~~l~k~~a~~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFA-------VrnYWR-GFFAAtcsA 293 (931)
T KOG0476|consen 222 AALLSKVTACQFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFA-------VRNYWR-GFFAATCSA 293 (931)
T ss_pred HHHHHHHHHhhccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeee-------HHHHHH-HHHHHHhHH
Confidence 999988632 34556678999999999999999999999999999988744 477776 478999999
Q ss_pred HHHhhh---cC-CC----Ccccc--C-cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhcCC
Q 004220 325 VVSEVG---LG-SE----PAFKV--P-EYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIV------DNLQKDNGI 387 (767)
Q Consensus 325 ~v~~~~---~g-~~----~~f~~--~-~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~------~~~~~~~~~ 387 (767)
++.|++ +- .+ .+|+. + ++.| .+.|+++|+++|++||++|++|+++.+...-+. ++++.+
T Consensus 294 ~vFR~lavf~v~~~~tItA~yqT~F~~d~~F-~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k--- 369 (931)
T KOG0476|consen 294 FVFRLLAVFFVEAEVTITALYQTSFRPDFPF-DVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQK--- 369 (931)
T ss_pred HHHHHHHHHcccchhhhHHHHhccCCCCCCC-CHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhh---
Confidence 888753 12 11 23433 2 2344 789999999999999999999987544332221 222222
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccC---C----HHHHHHHHccCCCcc---------------------Ccc-HHHHHH
Q 004220 388 PKAVFPVMGGLAVGLIALMFPEILYW---G----FENVDILLESRPFVK---------------------GLT-ADMLLQ 438 (767)
Q Consensus 388 ~~~~~~~lggl~vg~i~~~~P~~~g~---G----~~~i~~ll~~~~~~~---------------------~~~-~~~l~~ 438 (767)
.++++|++.+++++.+ -||.-+|. | .+++..++++..|.. +.+ ...|+.
T Consensus 370 ~~llyp~~~a~v~ssl--tfP~GlG~f~aG~l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~l 447 (931)
T KOG0476|consen 370 SRLLYPAFIALVFSSL--TFPPGLGQFLAGRLSFRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVL 447 (931)
T ss_pred CccHHHHHHHHHHhhe--ecCCcccccccccccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHH
Confidence 3466787777777654 46765553 3 467778888775411 122 234777
Q ss_pred HHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCcccc-ccccccchhHHHHHHHHHHHHHhcCc
Q 004220 439 LVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF-SILEVASPQAYGLVGMAATLAGVCQV 517 (767)
Q Consensus 439 ~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~alvG~aA~la~~~~a 517 (767)
++++|+....+|.....|.|.|+|.++|||++|+++|+.+..+||.. ++. .+...+.||.||++|+|||.+++|+
T Consensus 448 f~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~G---i~~~gi~~~I~PG~YAVVGAAAfsGaVTH- 523 (931)
T KOG0476|consen 448 FFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEG---IRGGGITPPIHPGGYAVVGAAAFSGAVTH- 523 (931)
T ss_pred HHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccc---cccCCccCccccchhhhhhhhhhccceee-
Confidence 89999999999999999999999999999999999999998888762 111 1134688999999999999999999
Q ss_pred hHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCcchhhhhHHhhhccccccchhhhccccccCCCcchhhccccc
Q 004220 518 PLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPY 597 (767)
Q Consensus 518 Plt~~vi~~Eltg~~~~~lP~~~a~~va~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~l~~~~~~ 597 (767)
+++.+||++|+||+...++|+|+|+++++.+++.. ..++||.... . ++++|
T Consensus 524 TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~L--QPSiYDSII~----------I-----------------KklPY 574 (931)
T KOG0476|consen 524 TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASL--QPSIYDSIIR----------I-----------------KKLPY 574 (931)
T ss_pred eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHh--Ccchhhheee----------e-----------------ccCCc
Confidence 59999999999999999999999999999998654 6888987642 2 24556
Q ss_pred ccccccccccccccccchhhhhhhccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCC--CCcEEEEEehhh
Q 004220 598 AINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN--DNILIGLLTLGD 675 (767)
Q Consensus 598 ~~~L~~~~~~l~l~d~~~~~~~~l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~--~g~lvGiVt~~d 675 (767)
++++. ..+.....+.|+|+|.+++..+..++|..|..+.+..+..+.+|+||+ +..++|.|.+++
T Consensus 575 LPDlp-------------ps~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~ 641 (931)
T KOG0476|consen 575 LPDLP-------------PSRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRY 641 (931)
T ss_pred CCCCC-------------CcccceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHH
Confidence 66653 223456788999999999999999999999999998888999999986 456899999999
Q ss_pred HHHHHHH
Q 004220 676 IEEFSKY 682 (767)
Q Consensus 676 L~~~l~~ 682 (767)
|...++.
T Consensus 642 L~~ll~~ 648 (931)
T KOG0476|consen 642 LTALLQR 648 (931)
T ss_pred HHHHHHh
Confidence 9887753
No 16
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=3.5e-52 Score=466.53 Aligned_cols=397 Identities=19% Similarity=0.250 Sum_probs=301.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 004220 92 IISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDD 171 (767)
Q Consensus 92 ~l~~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~~~ 171 (767)
|+...++|+++|+++..++..++++++++....... ..++. ..|+.+++.|++++++++++.++ . .+...
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~l~~~~~~~~~~~~~~~l~~~--~--~p~a~ 71 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLL-----TGNSL-LQYLVWVAYPVALVLFSALFCKY--I--SPQAV 71 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccchH-HHHHHHHHHHHHHHHHHHHHHHh--c--CCccC
Confidence 456789999999999999999999988875432110 11111 23344567799989988888642 1 23455
Q ss_pred CcccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHH
Q 004220 172 DDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSI 251 (767)
Q Consensus 172 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~i 251 (767)
|++|||+++... ++ +..+..+.++.+.|++++.+++++|+|+|||||++|+|+++
T Consensus 72 GsGIp~v~~~l~--g~-----------------------~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i 126 (426)
T cd03683 72 GSGIPEMKTILR--GV-----------------------VLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIV 126 (426)
T ss_pred CCCHHHHHHHHc--CC-----------------------CccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHH
Confidence 677999965211 00 11234446678899999999999999999999999999999
Q ss_pred HHHHHhhhc------CCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHH
Q 004220 252 AKGVGNLFD------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (767)
Q Consensus 252 g~~~~~~~~------~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~ 325 (767)
++.++|+++ .++.+||++++||+|||++|+||||++|++|++|++..++ +.+.+.+ ++++|++|++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~-------~~~~~~~-~~i~s~~a~~ 198 (426)
T cd03683 127 AALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYF-------AVRNYWR-GFFAATCGAF 198 (426)
T ss_pred HHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhc-------cHHHHHH-HHHHHHHHHH
Confidence 999999875 3566788999999999999999999999999999997653 2344444 5788888888
Q ss_pred HHhhhc----CCCCc---cccCc--CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCchhHHH
Q 004220 326 VSEVGL----GSEPA---FKVPE--YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD---NGIPKAVFP 393 (767)
Q Consensus 326 v~~~~~----g~~~~---f~~~~--~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~~~ 393 (767)
+++.+. ++.+. |..+. ...++..+++.++++|+++|++|.+|++.+.++.+++++..+. .+.++++++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (426)
T cd03683 199 TFRLLAVFFSDQETITALFKTTFFVDFPFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYP 278 (426)
T ss_pred HHHHHHhhcCCCccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHH
Confidence 776532 33332 32221 1123567899999999999999999999998887776654321 233456778
Q ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHH
Q 004220 394 VMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMA 473 (767)
Q Consensus 394 ~lggl~vg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~ 473 (767)
.+++++++.+. +| ...+..+.++|+++|++|+++|+|||+|.|++++||++|++
T Consensus 279 ~~~g~~~~~l~--~p------------------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~ 332 (426)
T cd03683 279 AIVALLTAVLT--FP------------------------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRL 332 (426)
T ss_pred HHHHHHHHHHH--HH------------------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHH
Confidence 88888887643 44 11355678999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhc
Q 004220 474 YGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQM 553 (767)
Q Consensus 474 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v~~~~~ 553 (767)
+|.+++.++|+.. +.. .....+|..|+++||+|++++++|+|.++ ++++|+||++++++|+|+++++|+++++.+
T Consensus 333 ~g~~~~~~~p~~~--~~~-~~~~~~~~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~- 407 (426)
T cd03683 333 VGEIMAVLFPEGI--RGG-ISNPIGPGGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFL- 407 (426)
T ss_pred HHHHHHHHcCccc--ccC-CCCCcCchHHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhh-
Confidence 9999997765100 000 00235789999999999999999997765 699999999999999999999999988754
Q ss_pred cCcchhhhhH
Q 004220 554 RRRDVKETKV 563 (767)
Q Consensus 554 ~~~~~~~~~~ 563 (767)
++++||...
T Consensus 408 -~~~iY~~~l 416 (426)
T cd03683 408 -QPSIYDSII 416 (426)
T ss_pred -CCCHHHHHH
Confidence 469999875
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.4e-50 Score=446.09 Aligned_cols=373 Identities=21% Similarity=0.298 Sum_probs=293.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 004220 95 SCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDD 174 (767)
Q Consensus 95 ~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~~~~~~~ 174 (767)
++++|+++|+++.+|+..+++.++++|+ .+|. .+.+|+. |++++++.+.. ++.. +++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----------------~~~~-~~~~p~~-g~~i~~l~~~~---~~~~--~~g 58 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----------------HPWL-LPFLPLA-GLLIGYLYQKF---GKNS--EKG 58 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhHH-HHHHHHH-HHHHHHHHHHh---Cccc--CCC
Confidence 6899999999999999999999999764 1454 3445654 56666554321 2222 235
Q ss_pred cccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHH
Q 004220 175 VQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKG 254 (767)
Q Consensus 175 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~iga~ig~~ 254 (767)
++++++....+ +....++..+.|++++.+++++|+|+|||||++|+|+++|++
T Consensus 59 ~~~v~~~~~~~---------------------------~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~ 111 (378)
T cd03682 59 NNLIIEEIHGP---------------------------EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADA 111 (378)
T ss_pred hHHHHHHHHcc---------------------------CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHH
Confidence 66665421100 111123456789999999999999999999999999999999
Q ss_pred HHhhhcCCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHHhhhcCCC
Q 004220 255 VGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSE 334 (767)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~ 334 (767)
+++++|.+++++|.+++||++||++++||||++|++|++|++..+. .+++.+.+ +++++++++.+++.+...+
T Consensus 112 ~~~~~~~~~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~------~~~~~~~~-~~i~~~~a~~v~~~~~~~~ 184 (378)
T cd03682 112 FGRVFKLPEEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGR------LRYSALIP-CLVAAIVADWVSHALGLEH 184 (378)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhh------hhHHHHHH-HHHHHHHHHHHHHHhCCCC
Confidence 9999999888899999999999999999999999999999985321 22344444 5789999999888754555
Q ss_pred CccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHh--ccccc
Q 004220 335 PAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMF--PEILY 412 (767)
Q Consensus 335 ~~f~~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~--P~~~g 412 (767)
+.|.++.....++.++++++++|++||++|.+|++++.++++++++. ..+.+++++++|++++++.++. |+..|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~----~~~~~~~~~iggl~~g~~~~~~~~~~~~G 260 (378)
T cd03682 185 THYHIVFIPTLDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR----IKNPYLRPFVGGLLIILLVYLLGSRRYLG 260 (378)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 66766543334577888999999999999999999988877665432 2345788999999999988775 45789
Q ss_pred CCHHHHHH-HHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCcccc
Q 004220 413 WGFENVDI-LLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF 491 (767)
Q Consensus 413 ~G~~~i~~-ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~ 491 (767)
.|++.++. +.+++ .+ ....+.|+++|++|+|+|+|||.|+|++++||++|+.++++++.
T Consensus 261 ~g~~~i~~~~~~~~-----~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~~----------- 320 (378)
T cd03682 261 LGTPLIEDSFFGGT-----VY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILGL----------- 320 (378)
T ss_pred CCHHHHHHHHhcCC-----ch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHCC-----------
Confidence 99998887 43332 22 33468999999999999999999999999999999999998642
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCcchh
Q 004220 492 SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVK 559 (767)
Q Consensus 492 ~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v~~~~~~~~~~~ 559 (767)
++..|+++||+|++++++|+|+|++++++|+|| ++.++|+++++++|+.+++ ++++|
T Consensus 321 ------~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~----~~~iy 377 (378)
T cd03682 321 ------PVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG----HTGIY 377 (378)
T ss_pred ------CHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC----CCCCC
Confidence 467899999999999999999999999999999 5788999999999988764 44555
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=1.1e-49 Score=442.28 Aligned_cols=384 Identities=15% Similarity=0.227 Sum_probs=295.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004220 88 NSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSL 167 (767)
Q Consensus 88 ~~~~~l~~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~ 167 (767)
-.+++++++++|+++|+++.+|+.+++++++++|+..|... . . ....+| |.+++|.+||+++|++.++. +.
T Consensus 9 ~~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~-~---~-~~~~~~-~~~~~~~~gGllvgll~~~~---~~ 79 (414)
T PRK03655 9 MLLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTL-G---I-AQDSPL-WIIGMLTLTGIAVGLVIRFS---PG 79 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-c---c-ccccch-HHHHHHHHHHHHHHHHHHHc---CC
Confidence 44678999999999999999999999999999998765321 1 1 111234 35677999999999996532 11
Q ss_pred CCCCCcccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 004220 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (767)
Q Consensus 168 ~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~i 247 (767)
..++ .|++..... .+.+ ......|++++++++++|+|+|||||++|+
T Consensus 80 --~~G~-~~~~~~~~~-----------------------------~~~~-~~~~~~~~~~~~l~l~~G~S~GrEGP~Vqi 126 (414)
T PRK03655 80 --HAGP-DPATEPLIG-----------------------------APVP-PSALPGLLLALILGLAGGVSLGPEHPIMTV 126 (414)
T ss_pred --CCCC-hHHHHHHhc-----------------------------CCCC-ccHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 1122 233221100 0011 123467889999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHH
Q 004220 248 GKSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVS 327 (767)
Q Consensus 248 ga~ig~~~~~~~~~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~ 327 (767)
|++++++++|+++. +.+++.++.||+|||+||+||||++|++|++|++.+++.. .......++ +++++++..+.
T Consensus 127 Ga~igs~~~r~~~~-~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~----~~~~~~~~~-v~aa~~a~~v~ 200 (414)
T PRK03655 127 NIALAVAIGARLLP-RVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEV----PLWDRLFAP-LMAAAAGALTT 200 (414)
T ss_pred HHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhH----HHHHHHHHH-HHHHHHHHHHH
Confidence 99999999998843 3456678999999999999999999999999998764321 011122332 45666777777
Q ss_pred hhhcCCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHh
Q 004220 328 EVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMF 407 (767)
Q Consensus 328 ~~~~g~~~~f~~~~~~~~~~~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~ 407 (767)
+...+....|.++++...+..+++.++++|+++|++|.+|++....+.++++ +.+.+ ++++.++|+++++++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~----~~~~p-~~~~~lgGl~vg~l~l~~ 275 (414)
T PRK03655 201 GLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMH----RLKNP-VLVLGIGGFILGILGVIG 275 (414)
T ss_pred HHhCCCCcceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccc-hHHHHHHHHHHHHHHHHh
Confidence 7655544444555555556678889999999999999999988776655444 22334 356789999999998875
Q ss_pred -cccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCC
Q 004220 408 -PEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSN 486 (767)
Q Consensus 408 -P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~ 486 (767)
|+.+|+||+.++.+.++. +.+...++.+.++|+++|++|+++|+|||+|+|++++||++|..++++++.
T Consensus 276 ~~~~~g~Gy~~i~~~~~~~----~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~p~------ 345 (414)
T PRK03655 276 GPLTLFKGLDEMQQMAANQ----AFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHVPA------ 345 (414)
T ss_pred CCccccCCHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHhccC------
Confidence 778999999999887653 246666777899999999999999999999999999999999999887531
Q ss_pred CccccccccccchhHHHHHHHHHHHHHhcC----chHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 004220 487 PTIHFSILEVASPQAYGLVGMAATLAGVCQ----VPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFT 549 (767)
Q Consensus 487 ~~~~~~~~~~~~~~~~alvG~aA~la~~~~----aPlt~~vi~~Eltg~~~~~lP~~~a~~va~~v~ 549 (767)
.++...+++||+|++++++| +|+|++++++||| ++|+|+++.++.|+.
T Consensus 346 ----------~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 346 ----------VPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLL 397 (414)
T ss_pred ----------CChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence 35678889999999999999 6999999999999 899999999998875
No 19
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.81 E-value=3.9e-19 Score=207.92 Aligned_cols=190 Identities=14% Similarity=0.160 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhc-CCch---hHHHHHHHHHHHHHHHHh-cccc-cCCHHHHH
Q 004220 350 LPLYLLLGVLCGLISLTLSRCTTYMLAIVDNL----QKDN-GIPK---AVFPVMGGLAVGLIALMF-PEIL-YWGFENVD 419 (767)
Q Consensus 350 l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~----~~~~-~~~~---~~~~~lggl~vg~i~~~~-P~~~-g~G~~~i~ 419 (767)
+...+++|+++|+++.+|..++.+.++++... .... ..++ ++.|++||++++++.++. ++.. +.+.+.++
T Consensus 25 ~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~ 104 (574)
T PRK01862 25 LIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYME 104 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHH
Confidence 45679999999999999999988887764321 1111 1122 334667778888765543 3333 44556565
Q ss_pred HHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccch
Q 004220 420 ILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASP 499 (767)
Q Consensus 420 ~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 499 (767)
...++. ..++ ....+.|++.+.+|+|+|.|.|+++|++++||++|+.++++++. +....
T Consensus 105 ~~~~~~---~~~~----~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~--------------~~~~~ 163 (574)
T PRK01862 105 AVALGD---GVVP----VRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF--------------DPPRL 163 (574)
T ss_pred HHHcCC---CCCC----hHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC--------------CHHHH
Confidence 554433 2233 34567799999999999999999999999999999999999863 12345
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHh-CCc--hhHHHHHHHHHHHHHHHhhhccCcchhh
Q 004220 500 QAYGLVGMAATLAGVCQVPLTSVLLLFELT-QDY--RIVLPLLGAVGLSSWFTSGQMRRRDVKE 560 (767)
Q Consensus 500 ~~~alvG~aA~la~~~~aPlt~~vi~~Elt-g~~--~~~lP~~~a~~va~~v~~~~~~~~~~~~ 560 (767)
..+..||+||.+|+++++|+++++|.+|.+ +++ +.+.|.+++++++.++++.+...++.|+
T Consensus 164 r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~~g~~~~~~ 227 (574)
T PRK01862 164 RLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREFAGYQPPYE 227 (574)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCceee
Confidence 678899999999999999999999999975 544 6889999999999988877665555553
No 20
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.79 E-value=8.7e-19 Score=177.07 Aligned_cols=251 Identities=16% Similarity=0.153 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHhC-------Cch-hHHHHHHHHHHHHHHHhhhccCcchhhhhHH-h-hhcc
Q 004220 500 QAYGLVGMAATLAGVCQVPLTSVLLLFELTQ-------DYR-IVLPLLGAVGLSSWFTSGQMRRRDVKETKVA-V-HANT 569 (767)
Q Consensus 500 ~~~alvG~aA~la~~~~aPlt~~vi~~Eltg-------~~~-~~lP~~~a~~va~~v~~~~~~~~~~~~~~~~-~-~~~~ 569 (767)
+..+..+++++++--+=-|=++++-+.-+.| ++. .+.|+.+-+++ .+.-.+.+++-....+.. + ....
T Consensus 110 ~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~Sli--Lv~~a~lynnl~~r~YPh~~~~p~a 187 (382)
T COG3448 110 GLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLI--LVGLALLYNNLTRRTYPHHWLSPPA 187 (382)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHH--HHHHHHHHHHHhcCCCCCccCCCcc
Confidence 4445556667666555555565555544433 344 56787766654 223333322222222211 1 0111
Q ss_pred ccccchhhhccccccCCCcch---hhcccccccccccccccccccccchhhhhhhccCccccccccCceEEeCCCCHHHH
Q 004220 570 NRKRQFEIYTSRTRGLSSSDL---LAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEA 646 (767)
Q Consensus 570 ~~~~~~~~~p~~~~~l~~~~~---l~~~~~~~~~L~~~~~~l~l~d~~~~~~~~l~~~~V~dvM~~~~~~V~~~~tl~ea 646 (767)
..+-..|..|.+..++.+.|. +.+..+++.--.+.-+.+..+-.....+.....++..|+|+++++++++++++.+|
T Consensus 188 n~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSrdVvtv~~~ts~dhA 267 (382)
T COG3448 188 NLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSRDVVTVSTDTSIDHA 267 (382)
T ss_pred cccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCccceecCCcCChHHH
Confidence 122233444555556666662 22222222110000000000000111223345578999999999999999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhc-ccccccchhhccccCCCCccCCeEecCCCCHHHHHHHH
Q 004220 647 LTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-SRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILM 725 (767)
Q Consensus 647 l~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~-~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m 725 (767)
.++|.+|+++.+||+|++.+++|+||.+|+.+.......+. .......++.+|++ ...++.+|++..|...++
T Consensus 268 ~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~------~v~tv~pdtpa~~lvp~l 341 (382)
T COG3448 268 RKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTT------PVVTVRPDTPAVELVPRL 341 (382)
T ss_pred HHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccC------cceeecCCCcHHHHHHHh
Confidence 99999999999999999999999999999997432111100 12345568999997 799999999999999999
Q ss_pred HhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 726 DRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 726 ~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
.+.+.+++||+|+ +|+++||||.+|++.+..++
T Consensus 342 ad~g~H~lpvld~-----~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 342 ADEGLHALPVLDA-----AGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred hcCCcceeeEEcC-----CCcEEEEeeHHHHHHHHHHH
Confidence 9999999999998 99999999999999886543
No 21
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.73 E-value=3.3e-17 Score=182.62 Aligned_cols=184 Identities=22% Similarity=0.257 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-------cCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCcc
Q 004220 357 GVLCGLISLTLSRCTTYMLAIVDNLQKD-------NGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVK 429 (767)
Q Consensus 357 Gii~Gl~g~~f~~~~~~~~~~~~~~~~~-------~~~~~~~~~~lggl~vg~i~~~~P~~~g~G~~~i~~ll~~~~~~~ 429 (767)
|+++|+++.+|.+++.+.++++.+.... .++...+.+.+++++++++....|...|.|.+++...++++.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~~~~--- 77 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIALGG--- 77 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHhCC---
Confidence 6889999999999998888776544211 111223567788888988887777688899999887776531
Q ss_pred CccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHHH
Q 004220 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAA 509 (767)
Q Consensus 430 ~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA 509 (767)
+ .......+.|++++.+++++|.|+|+|+|++++|+++|..+++.++. +..+...++.+||+|
T Consensus 78 ~---~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--------------~~~~~~~l~~~G~aa 140 (383)
T cd00400 78 G---RLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--------------SRNDRRILVACGAAA 140 (383)
T ss_pred C---CCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHH
Confidence 1 12355789999999999999999999999999999999999998763 124577899999999
Q ss_pred HHHHhcCchHHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHhhhccCcchhh
Q 004220 510 TLAGVCQVPLTSVLLLFELTQDYR---IVLPLLGAVGLSSWFTSGQMRRRDVKE 560 (767)
Q Consensus 510 ~la~~~~aPlt~~vi~~Eltg~~~---~~lP~~~a~~va~~v~~~~~~~~~~~~ 560 (767)
.+++++|+|++++++++|++++.. .+.|.++++.+++.+++.+..++..|+
T Consensus 141 glaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~~ 194 (383)
T cd00400 141 GIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLFGAEPAFG 194 (383)
T ss_pred HHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCeee
Confidence 999999999999999999997554 789999999999988776654444433
No 22
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.72 E-value=7.5e-17 Score=180.71 Aligned_cols=184 Identities=24% Similarity=0.275 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCchhHH----HHHHHHHHHHHHH-HhcccccCCHHHHHHHHccCCCc
Q 004220 356 LGVLCGLISLTLSRCTTYMLAIVDNLQKDN--GIPKAVF----PVMGGLAVGLIAL-MFPEILYWGFENVDILLESRPFV 428 (767)
Q Consensus 356 lGii~Gl~g~~f~~~~~~~~~~~~~~~~~~--~~~~~~~----~~lggl~vg~i~~-~~P~~~g~G~~~i~~ll~~~~~~ 428 (767)
+|+++|+++.+|.+++.++++++.+..... ..+.++. +.+++++++.+.. +.|+..|+|+++++..++++.
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~-- 78 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL-- 78 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC--
Confidence 488999999999999999888776544321 1112222 2344555555543 479999999999999887651
Q ss_pred cCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHH
Q 004220 429 KGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMA 508 (767)
Q Consensus 429 ~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~a 508 (767)
. .......+.|++.+.+|+++|.|+|+|+|++++|+++|..+++.++. ...+...++.+||+
T Consensus 79 -~---~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~--------------~~~~~~~l~~~g~a 140 (402)
T cd01031 79 -P---PNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT--------------SPEERRQLIAAGAA 140 (402)
T ss_pred -C---cccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHH
Confidence 1 12345788999999999999999999999999999999999998763 12357889999999
Q ss_pred HHHHHhcCchHHHHHHHHH-HhCCch--hHHHHHHHHHHHHHHHhhhccCcchh
Q 004220 509 ATLAGVCQVPLTSVLLLFE-LTQDYR--IVLPLLGAVGLSSWFTSGQMRRRDVK 559 (767)
Q Consensus 509 A~la~~~~aPlt~~vi~~E-ltg~~~--~~lP~~~a~~va~~v~~~~~~~~~~~ 559 (767)
|.+++++|+|++++++.+| ++++++ .+.|++++++++.++++....+++.|
T Consensus 141 ag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~~~~~~~~ 194 (402)
T cd01031 141 AGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLFFGLGPVL 194 (402)
T ss_pred HhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCCceE
Confidence 9999999999999999999 666644 79999999999988877655544444
No 23
>PRK05277 chloride channel protein; Provisional
Probab=99.70 E-value=5.2e-16 Score=175.67 Aligned_cols=190 Identities=16% Similarity=0.198 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CchhHHHHHHHHHHHHHH-----HHhcccccCCHHHHHHHH
Q 004220 351 PLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNG---IPKAVFPVMGGLAVGLIA-----LMFPEILYWGFENVDILL 422 (767)
Q Consensus 351 ~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~lggl~vg~i~-----~~~P~~~g~G~~~i~~ll 422 (767)
...+++|+++|+++.+|.++++++++++........ ++.+..+++.+.+.+.+. .+.|+..|+|+++++..+
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l 81 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGAL 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 467999999999999999999998887765432211 222333444443333332 245999999999999888
Q ss_pred ccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhHH
Q 004220 423 ESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502 (767)
Q Consensus 423 ~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (767)
++.. ..+ .......|++.+.+++++|.|+|+|+|++++|+++|..+++.++.. +..+...+
T Consensus 82 ~~~~---~~~---~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~-------------~~~~~~~l 142 (438)
T PRK05277 82 EGLR---PVR---WWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLR-------------SDEARHTL 142 (438)
T ss_pred cCCC---ccc---hHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccC-------------CHHHHHHH
Confidence 7641 122 1345689999999999999999999999999999999999987631 12356789
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHH-HhCC--ch--hHHHHHHHHHHHHHHHhhhccCcchh
Q 004220 503 GLVGMAATLAGVCQVPLTSVLLLFE-LTQD--YR--IVLPLLGAVGLSSWFTSGQMRRRDVK 559 (767)
Q Consensus 503 alvG~aA~la~~~~aPlt~~vi~~E-ltg~--~~--~~lP~~~a~~va~~v~~~~~~~~~~~ 559 (767)
..+||+|.+++++|+|+++++|++| ++++ ++ .+.|+++++++++++.+.+..+.+.|
T Consensus 143 i~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~ 204 (438)
T PRK05277 143 LAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFNGEQAVI 204 (438)
T ss_pred HHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 9999999999999999999999999 5553 33 47999999998888776554444443
No 24
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.67 E-value=2.4e-15 Score=167.73 Aligned_cols=192 Identities=19% Similarity=0.139 Sum_probs=137.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004220 88 NSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSL 167 (767)
Q Consensus 88 ~~~~~l~~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~ 167 (767)
.+..++..+++|+++|+++.+|++.+++.++.+.+.. ...+ +.+.++.+.++|++++.+..+.+. .
T Consensus 198 ~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~--------~~~~----~~~~~~~~~~~gl~~~~~~~~~~~--~ 263 (390)
T cd01034 198 LGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWV--------RRFR----RRRPVLFAALCGLALALIGLVSGG--L 263 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccc----chhhHHHHHHHHHHHHHHHHhCCC--c
Confidence 4555788999999999999999999999888764321 0000 111223455677777766543211 1
Q ss_pred CCCCCcccccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 004220 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (767)
Q Consensus 168 ~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~i 247 (767)
.. |.+.+++++... .+........+.|++++.+++++|+++|+|+|++++
T Consensus 264 ~~--G~G~~~i~~~~~----------------------------~~~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~i 313 (390)
T cd01034 264 TF--GTGYLQARAALE----------------------------GGGGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAV 313 (390)
T ss_pred cc--cCcHHHHHHHHh----------------------------CCCcccHHHHHHHHHHHHHHHHcCCCcceechHHHH
Confidence 12 223444432100 000112235689999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHHHH
Q 004220 248 GKSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVS 327 (767)
Q Consensus 248 ga~ig~~~~~~~~~~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~ 327 (767)
|+++|+.++++++. .+.+.++.+||+|++++++|+|+++++|++|++... ..+.++++++++|+.++
T Consensus 314 Ga~~G~~~~~~~~~--~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~-----------~~l~p~lia~~~A~~v~ 380 (390)
T cd01034 314 GAGLGSLLAALLGS--VSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQ-----------QMLLPLLAAALLASGVS 380 (390)
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCCh-----------hhHHHHHHHHHHHHHHH
Confidence 99999999999875 355689999999999999999999999999999642 23445788999999999
Q ss_pred hhhcCCCCcc
Q 004220 328 EVGLGSEPAF 337 (767)
Q Consensus 328 ~~~~g~~~~f 337 (767)
+.+ +.++.|
T Consensus 381 ~~~-~~~~iY 389 (390)
T cd01034 381 RLV-CPEPLY 389 (390)
T ss_pred HHh-CCCCCC
Confidence 885 555655
No 25
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.67 E-value=2.8e-16 Score=156.71 Aligned_cols=124 Identities=24% Similarity=0.317 Sum_probs=114.6
Q ss_pred hhccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhcc
Q 004220 620 LKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMC 699 (767)
Q Consensus 620 ~l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm 699 (767)
...+.+|+++|++++.++.+|+|+.|+.+.+.+++++..||+|++ +++|++|..|+.+++.++. .+..|+|+|
T Consensus 168 siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~------~~~kV~~~M 240 (294)
T COG2524 168 SIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGN------LDAKVSDYM 240 (294)
T ss_pred ecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCC------ccccHHHHh
Confidence 355678999999999999999999999999999999999999965 9999999999999987442 467899999
Q ss_pred ccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 700 SADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 700 ~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
.+ +++++++|+.+.||+++|.++++.++.|+|+ +|+++|+||++||++.+.
T Consensus 241 ~k------~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-----~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 241 RK------NVITINEDEDIYDAIRLMNKNNVGRLLVTDS-----NGKPVGIITRTDILTRIA 291 (294)
T ss_pred cc------CCceEcCchhHHHHHHHHHhcCcceEEEEcc-----CCcEEEEEehHHHHHHhh
Confidence 99 8999999999999999999999999999997 899999999999998764
No 26
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.65 E-value=4.4e-15 Score=165.28 Aligned_cols=182 Identities=18% Similarity=0.169 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004220 89 SGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLD 168 (767)
Q Consensus 89 ~~~~l~~~lvG~l~Gl~~~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggll~gll~~~~~~~~~~ 168 (767)
+..+...+++|+++|+++.+|++.+++.++++... . .+| ..+.++|++++.+..+.+..
T Consensus 202 ~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~~-----------~---~~~----~~~~l~gl~~g~~~~~~p~~--- 260 (388)
T cd01033 202 TPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPKG-----------K---RIL----WQMPLAFLVIGLLSIFFPQI--- 260 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------c---chH----HHHHHHHHHHHHHHHHHHHH---
Confidence 55678899999999999999999999988765210 0 112 23568889998876544332
Q ss_pred CCCCcc-cccccccCCCCCCCcccccccchhhhhccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 004220 169 DDDDDD-VQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (767)
Q Consensus 169 ~~~~~~-i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~l~~~l~l~~G~s~G~EgP~v~i 247 (767)
.+.|.+ +..+.+. +..........+.|++++.+|+++|+|+|.|+|++.+
T Consensus 261 ~G~G~~~i~~~~~~-----------------------------~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~i 311 (388)
T cd01033 261 LGNGRALAQLAFST-----------------------------TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLAL 311 (388)
T ss_pred hCCcHHHHHHHHcC-----------------------------CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHH
Confidence 333311 1111110 0011111335689999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC--CchhhHHHHhhhhhHHHHHhccchhHHHHHHHHhhccccccccchhhhhhhHHHHHHHHHHHHH
Q 004220 248 GKSIAKGVGNLFDR--RPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (767)
Q Consensus 248 ga~ig~~~~~~~~~--~~~~~~~l~~~g~aAg~aa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~ 325 (767)
|+++|+.+++.++. ++.+...++.|||+|.+++++|+|+++++|++|++... +..+. ++++++++|+.
T Consensus 312 Ga~~G~~~g~~~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~---------~~~l~-Pl~ia~~~a~~ 381 (388)
T cd01033 312 GALLGALLGIVWNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQN---------PLFLI-PLMLAVAGAVA 381 (388)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCC---------HHHHH-HHHHHHHHHHH
Confidence 99999999998652 34455689999999999999999999999999997521 23344 46889999999
Q ss_pred HHhhh
Q 004220 326 VSEVG 330 (767)
Q Consensus 326 v~~~~ 330 (767)
+++.+
T Consensus 382 vs~~~ 386 (388)
T cd01033 382 VSRFI 386 (388)
T ss_pred HHHHh
Confidence 98764
No 27
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.62 E-value=8.3e-15 Score=162.72 Aligned_cols=175 Identities=19% Similarity=0.302 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCcc
Q 004220 353 YLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLT 432 (767)
Q Consensus 353 ~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~ 432 (767)
.+++|+++|+++.+|+++..++.+++.. .++. .....++|++++.+...+|+..+.|.+++.+.++++. ...+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----~~~~-~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~~~~~~~--~~~~ 74 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----HPWL-LPFLPLAGLLIGYLYQKFGKNSEKGNNLIIEEIHGPE--EGIP 74 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHH-HHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHccC--CCCc
Confidence 5789999999999999999888765432 1211 1222345666666666777777788888877776541 1122
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHH
Q 004220 433 ADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLA 512 (767)
Q Consensus 433 ~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la 512 (767)
....+.|++.+.+++++|.|+|+++|++++|+++|..+++.++. +..+...++.+||+|.++
T Consensus 75 ----~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~--------------~~~~~r~l~~~g~aAgla 136 (378)
T cd03682 75 ----LRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL--------------PEEDRRILLIAGIAAGFA 136 (378)
T ss_pred ----hHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHH
Confidence 34566799999999999999999999999999999999998753 123456789999999999
Q ss_pred HhcCchHHHHHHHHHHh--C--CchhHHHHHHHHHHHHHHHhhh
Q 004220 513 GVCQVPLTSVLLLFELT--Q--DYRIVLPLLGAVGLSSWFTSGQ 552 (767)
Q Consensus 513 ~~~~aPlt~~vi~~Elt--g--~~~~~lP~~~a~~va~~v~~~~ 552 (767)
+++|+|++++++.+|++ + +++.++|.++++++++.+++.+
T Consensus 137 a~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~ 180 (378)
T cd03682 137 AVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL 180 (378)
T ss_pred HHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987 3 3567889999999988876543
No 28
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.62 E-value=8.6e-15 Score=164.16 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=141.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----hhhcCCchhHHHHHHHHHHHHHHHHh-c--ccccCCH
Q 004220 348 GELPLYLLLGVLCGLISLTLSRCTTYMLAIVDN-----L----QKDNGIPKAVFPVMGGLAVGLIALMF-P--EILYWGF 415 (767)
Q Consensus 348 ~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~lggl~vg~i~~~~-P--~~~g~G~ 415 (767)
+++...+++|+++|+.+.+|.+.++++++.+-. + ....++..++.|++||++++++.+.+ | +..++|.
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~g~ 82 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPHAP 82 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCCCc
Confidence 346678999999999999999988776553211 0 11111223345677899998876554 3 3566788
Q ss_pred HHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCcccccccc
Q 004220 416 ENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILE 495 (767)
Q Consensus 416 ~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~ 495 (767)
+++.+.++.+ ..++ ....+.|++.+.+++++|.|.|+++|++++|+++|..+++.++.
T Consensus 83 ~~vi~av~~~---g~~~----~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~~--------------- 140 (418)
T PRK01610 83 TDYMEALQTD---GQFD----YAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTP--------------- 140 (418)
T ss_pred HHHHHHHHcC---CCCC----ccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhCC---------------
Confidence 7777666543 2233 33578999999999999999999999999999999999998762
Q ss_pred ccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHh-C--CchhHHHHHHHHHHHHHHHhhhc
Q 004220 496 VASPQAYGLVGMAATLAGVCQVPLTSVLLLFELT-Q--DYRIVLPLLGAVGLSSWFTSGQM 553 (767)
Q Consensus 496 ~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Elt-g--~~~~~lP~~~a~~va~~v~~~~~ 553 (767)
..+...+..||++|.+++++|+|+++++|.+|.. + .+..+.|++++++++..+++.+.
T Consensus 141 ~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~~ 201 (418)
T PRK01610 141 RQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLLN 201 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 1356789999999999999999999999999964 4 34588999999998888776543
No 29
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.58 E-value=1.7e-14 Score=164.07 Aligned_cols=195 Identities=16% Similarity=0.181 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h---hcCC-c----hhHHHHHHHHHHHHHHH-HhcccccCCHHHH
Q 004220 349 ELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQ-K---DNGI-P----KAVFPVMGGLAVGLIAL-MFPEILYWGFENV 418 (767)
Q Consensus 349 ~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~-~---~~~~-~----~~~~~~lggl~vg~i~~-~~P~~~g~G~~~i 418 (767)
.+...+++|+++|+.+.+|..++.++++++.... . .... . ....+++++++++++.. +.|+..|+|.+++
T Consensus 32 ~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~v 111 (466)
T cd03685 32 KWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEV 111 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHH
Confidence 4567799999999999999999988877643321 1 1111 1 11345566777777654 4599999999999
Q ss_pred HHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccc
Q 004220 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (767)
Q Consensus 419 ~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (767)
+..+++... +...-....+.|++.+.+++|+|.|.|+++|++++||++|..+++.....+....+.++.. .+..+
T Consensus 112 ~~~l~g~~~----~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~-~~~~~ 186 (466)
T cd03685 112 KGYLNGVKI----PHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYF-RNDRD 186 (466)
T ss_pred HHHHcCcCc----cccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhhc-cCHHH
Confidence 998886421 1112245688999999999999999999999999999999999974310000000000000 01245
Q ss_pred hhHHHHHHHHHHHHHhcCchHHHHHHHHHHhC---CchhHHHHHHHHHHHHHH
Q 004220 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWF 548 (767)
Q Consensus 499 ~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg---~~~~~lP~~~a~~va~~v 548 (767)
...+..+||||.+++++++|+++++|++|.++ +.+...+.+++++++..+
T Consensus 187 ~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~v 239 (466)
T cd03685 187 KRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFT 239 (466)
T ss_pred HHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999875 223444444444444433
No 30
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.56 E-value=1.6e-14 Score=134.05 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=110.9
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhcccc
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSA 701 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~ 701 (767)
..++++++|+.+++.+++++++.+++++|.+++++.+||+++ ++++|-||..++.+...+.. +...+..++++|..
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---e~i~~~~vr~vM~e 138 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---ESIRSLRVREVMGE 138 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---cchhhhhHHHHhcC
Confidence 667899999999999999999999999999999999999985 89999999999999886432 45677889999998
Q ss_pred CCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhh
Q 004220 702 DGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 762 (767)
Q Consensus 702 ~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~ 762 (767)
..++|++|+++..+.+++.+++. +.|++ +|+++||||+.|+++..++
T Consensus 139 ------~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e------~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 139 ------PFPTVSPDESLNVISQLLEEHPA--VLVVE------NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ------CCCcCCCCCCHHHHHHHHhhCCe--EEEEe------CCceEEEEeHHHHHHHHhc
Confidence 89999999999999999988765 88886 7999999999999998764
No 31
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1e-13 Score=156.45 Aligned_cols=144 Identities=29% Similarity=0.383 Sum_probs=120.6
Q ss_pred HHHHHHHHHHH--HHHHHhcccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHH
Q 004220 391 VFPVMGGLAVG--LIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGA 468 (767)
Q Consensus 391 ~~~~lggl~vg--~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa 468 (767)
..+.++|++++ .+..+.|+.-|+|.+++.+.+++.. .........+|.+++.+++++|.+.|+++|++++|+
T Consensus 68 l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~~------~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga 141 (443)
T COG0038 68 LVPALGGLLVGALLVYKFAPEARGSGIPQAIEALHGRK------GRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGA 141 (443)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcCC------CcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHH
Confidence 34557888888 3345689999999999999888741 123345677799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhC----CchhHHHHHHHHHH
Q 004220 469 ATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ----DYRIVLPLLGAVGL 544 (767)
Q Consensus 469 ~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg----~~~~~lP~~~a~~v 544 (767)
++|+.++++++. +..+...+.++|+||.+++++++|+++++|++|+.. ++..+.|+++++++
T Consensus 142 ~~g~~~~~~l~~--------------~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~v 207 (443)
T COG0038 142 AIGSLLGRLLKL--------------SREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVV 207 (443)
T ss_pred HHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 999999999974 235778999999999999999999999999999763 35689999999999
Q ss_pred HHHHHhhhcc
Q 004220 545 SSWFTSGQMR 554 (767)
Q Consensus 545 a~~v~~~~~~ 554 (767)
+..+...+..
T Consensus 208 a~~v~~~~~~ 217 (443)
T COG0038 208 ALLVAGLFGG 217 (443)
T ss_pred HHHHHHHcCC
Confidence 9888776654
No 32
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.54 E-value=4.2e-14 Score=159.24 Aligned_cols=189 Identities=19% Similarity=0.159 Sum_probs=144.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------chhHHHHHHHHHHHHHHH-HhcccccCCHHHHHHH
Q 004220 350 LPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI-------PKAVFPVMGGLAVGLIAL-MFPEILYWGFENVDIL 421 (767)
Q Consensus 350 l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lggl~vg~i~~-~~P~~~g~G~~~i~~l 421 (767)
|...+++|+++|+++.+|..+.++..+++..+.+.... .....|++++++++.+.. +.|+..|+|.++++..
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~ 81 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTI 81 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHH
Confidence 45678999999999999999999888777665543211 112345666667776664 6899999999999888
Q ss_pred HccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhH
Q 004220 422 LESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQA 501 (767)
Q Consensus 422 l~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (767)
+++... +...-.+..+.|++.+.+++++|.|.|+++|++++||++|..++++.+..... ..+..+...
T Consensus 82 l~g~~~----~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~--------~~~~~~rr~ 149 (426)
T cd03683 82 LRGVVL----PEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGI--------YENESRRME 149 (426)
T ss_pred HcCCCc----cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhccccccc--------ccCHHHHHH
Confidence 876421 22233567889999999999999999999999999999999999987631000 001234456
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhC-C--chhHHHHHHHHHHHHHHHh
Q 004220 502 YGLVGMAATLAGVCQVPLTSVLLLFELTQ-D--YRIVLPLLGAVGLSSWFTS 550 (767)
Q Consensus 502 ~alvG~aA~la~~~~aPlt~~vi~~Eltg-~--~~~~lP~~~a~~va~~v~~ 550 (767)
+..||+||.++++++||+++++|.+|... + .+.+.|.+++++++..+++
T Consensus 150 Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~ 201 (426)
T cd03683 150 MLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFR 201 (426)
T ss_pred HHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999763 3 3467888888888877554
No 33
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=7.2e-14 Score=152.56 Aligned_cols=122 Identities=21% Similarity=0.274 Sum_probs=108.6
Q ss_pred ccCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhcc
Q 004220 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMC 699 (767)
Q Consensus 622 ~~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm 699 (767)
..++|+|+|++ +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..... ....+.+++++|
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~----~~~~~~~v~~im 275 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG----IDLRQASIADVM 275 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC----CCcccCCHHHhc
Confidence 77899999997 899999999999999999988888888899899999999999998755321 123456799999
Q ss_pred ccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004220 700 SADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (767)
Q Consensus 700 ~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~ 759 (767)
++ ++.++++++++.+|++.|.+++.+.+||+| +++++|+||++|++++
T Consensus 276 ~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~------~~~lvGiit~~dil~~ 323 (326)
T PRK10892 276 TP------GGIRVRPGILAVDALNLMQSRHITSVLVAD------GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CC------CCEEECCCCCHHHHHHHHHHCCCcEEEEee------CCEEEEEEEhHHhHhc
Confidence 98 789999999999999999999999999998 5799999999999874
No 34
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=5.4e-14 Score=153.19 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=112.2
Q ss_pred hhhhhc---cCccccccccC--ceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhccccc
Q 004220 617 VEELKR---RVFVSEVMRTR--YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSK 691 (767)
Q Consensus 617 ~~~~l~---~~~V~dvM~~~--~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~ 691 (767)
+...++ .++|+|+|+++ ++++++++++.++.+.|.+++...+||+|++|+++|+|+.+|+.+.+... ...
T Consensus 187 ~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~-----~~~ 261 (321)
T PRK11543 187 PAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG-----GAL 261 (321)
T ss_pred CCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC-----CCc
Confidence 345677 78999999998 99999999999999999988889999999999999999999998765321 123
Q ss_pred ccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004220 692 KLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (767)
Q Consensus 692 ~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~ 759 (767)
+.+++++|++ ++.++.+++++.+|++.|.+++.+.+||||+ +|+++|+||++|++++
T Consensus 262 ~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTR------GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-----NGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHhc
Confidence 4568899988 7899999999999999999999999999997 7899999999999875
No 35
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.52 E-value=6.6e-14 Score=157.29 Aligned_cols=191 Identities=18% Similarity=0.181 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-------hhHHHHHHHHHHHHHH-HHhcccccCCHHHHHHHHccCCCc
Q 004220 357 GVLCGLISLTLSRCTTYMLAIVDNLQKDNGIP-------KAVFPVMGGLAVGLIA-LMFPEILYWGFENVDILLESRPFV 428 (767)
Q Consensus 357 Gii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lggl~vg~i~-~~~P~~~g~G~~~i~~ll~~~~~~ 428 (767)
|++.|+++.+|..++++..+++..+..+..-. ....+++.+++.+.+. ++.|+..|+|.++++..+++...
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~- 79 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHL- 79 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcc-
Confidence 56778888888888888887776655331111 1234455555555554 47899999999999998876421
Q ss_pred cCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHH
Q 004220 429 KGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMA 508 (767)
Q Consensus 429 ~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~a 508 (767)
+........+.|++.+.+++++|.|.|+++|++++||++|..+++.++............ ..+..+...+..+|++
T Consensus 80 ---~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~ll~aGaa 155 (416)
T cd01036 80 ---PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQL-FRNPRDRRDFLVAGAA 155 (416)
T ss_pred ---cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhh-ccCHHHHHHHHHHHhh
Confidence 222335668899999999999999999999999999999999999875321000000000 0023456789999999
Q ss_pred HHHHHhcCchHHHHHHHHHHhCC---chhHHHHHHHHHHHHHHHhhh
Q 004220 509 ATLAGVCQVPLTSVLLLFELTQD---YRIVLPLLGAVGLSSWFTSGQ 552 (767)
Q Consensus 509 A~la~~~~aPlt~~vi~~Eltg~---~~~~lP~~~a~~va~~v~~~~ 552 (767)
|.++++++||+++++|.+|.+.. ...+.|.+++++++..+++..
T Consensus 156 AGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 156 AGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred cchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998742 346789999998888776544
No 36
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2.6e-13 Score=123.60 Aligned_cols=109 Identities=22% Similarity=0.270 Sum_probs=95.1
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++.+.++|+|++++++|+|+..|+.+... ....+.+++++|.. ++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~------~~~~~~~v~~~~~~------~~~~v 69 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP------NDYETLKVCEVYIV------PVPIV 69 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc------ccccccChhheeec------CCcEE
Confidence 4678899999999999999889999999999999999999999987421 11223468888977 68899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.+|+++|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 70 ~~~~~l~~al~~m~~~~~~~lpVvd~-----~~~~~Giit~~di~~ 110 (111)
T cd04603 70 YCDSKVTDLLRIFRETEPPVVAVVDK-----EGKLVGTIYERELLR 110 (111)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcC-----CCeEEEEEEhHHhhc
Confidence 99999999999999999999999996 799999999999975
No 37
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=4.1e-13 Score=122.86 Aligned_cols=112 Identities=18% Similarity=0.239 Sum_probs=97.6
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+..... .....+.+++++|.+ ++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~---~~~~~~~~v~~~~~~------~~~~v 72 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRC---GGPGCTAPVENVMTR------AVVSC 72 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhc---CCCcccCCHHHHhcC------CCeeE
Confidence 356789999999999999999999999999999999999999998765321 112345678899987 78999
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+++.+.+||+|+ +|+++|+|+++|+++
T Consensus 73 ~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 73 RPGDLLHDVWQVMKQRGLKNIPVVDE-----NARPLGVLNARDALK 113 (114)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEECC-----CCcEEEEEEhHhhcc
Confidence 99999999999999999999999997 789999999999975
No 38
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.48 E-value=4.1e-13 Score=151.98 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH-HHhcccccCCHHHHHHHHccCCCccCccHHH
Q 004220 357 GVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIA-LMFPEILYWGFENVDILLESRPFVKGLTADM 435 (767)
Q Consensus 357 Gii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggl~vg~i~-~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~ 435 (767)
|++.|+++..+..+.++....+....+. ....+.+++++++++.+. .+.|+..|+|.++++..+++... +...
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~----~~~~ 74 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYCNY--IIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFII----RGFL 74 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccc----cccc
Confidence 6788999999988777776554432211 111233445566666664 56899999999999988876421 2223
Q ss_pred HHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHHHhc
Q 004220 436 LLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVC 515 (767)
Q Consensus 436 l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la~~~ 515 (767)
-.+..+.|++.+.+++++|.|.|+++|++++||++|..++++++.... +..+...+..||++|.+++++
T Consensus 75 ~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~-----------~~~~~r~li~~GaaAGlaAaF 143 (445)
T cd03684 75 GKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRR-----------NEAKRREILSAAAAAGVAVAF 143 (445)
T ss_pred cHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHhhhhHHhc
Confidence 356788999999999999999999999999999999999998864211 234677899999999999999
Q ss_pred CchHHHHHHHHHHh-C--CchhHHHHHHHHHHHHHHHhh
Q 004220 516 QVPLTSVLLLFELT-Q--DYRIVLPLLGAVGLSSWFTSG 551 (767)
Q Consensus 516 ~aPlt~~vi~~Elt-g--~~~~~lP~~~a~~va~~v~~~ 551 (767)
++|+++++|.+|.. . +.+.+.|.+++++++.++.+.
T Consensus 144 ~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~ 182 (445)
T cd03684 144 GAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKS 182 (445)
T ss_pred CCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999965 3 345788999999988877653
No 39
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.46 E-value=4.2e-13 Score=151.81 Aligned_cols=127 Identities=23% Similarity=0.262 Sum_probs=113.9
Q ss_pred hhhhhhhccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccc
Q 004220 615 LEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLL 694 (767)
Q Consensus 615 ~~~~~~l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~ 694 (767)
.+..+.++.++++++|.+++.++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+...- .+.+
T Consensus 80 ~~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----------~~~~ 149 (479)
T PRK07807 80 DVVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----------RFTQ 149 (479)
T ss_pred HHHHHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc----------cCCC
Confidence 345667888999999999999999999999999999999999999999999999999999995321 1245
Q ss_pred hhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhh
Q 004220 695 VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 762 (767)
Q Consensus 695 V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~ 762 (767)
++++|++ ++.++++++++.+|+++|.+++.+.+||+|+ +++++|+||++||++....
T Consensus 150 V~diMt~------~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-----~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 150 VRDVMST------DLVTLPAGTDPREAFDLLEAARVKLAPVVDA-----DGRLVGVLTRTGALRATIY 206 (479)
T ss_pred HHHhccC------CceEECCCCcHHHHHHHHHhcCCCEEEEEcC-----CCeEEEEEEHHHHHHHhhC
Confidence 8999988 8999999999999999999999999999997 7899999999999987654
No 40
>PRK03655 putative ion channel protein; Provisional
Probab=99.46 E-value=2.3e-12 Score=143.95 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=126.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHH
Q 004220 349 ELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQK-------DNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDIL 421 (767)
Q Consensus 349 ~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~~lggl~vg~i~~~~P~~~g~G~~~i~~l 421 (767)
-+...+++|+++|+.+.+|.+++++.++++-.... ..++.....+.++|+++|++....|...|. ...++..
T Consensus 12 l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~~G~-~~~~~~~ 90 (414)
T PRK03655 12 LSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGHAGP-DPATEPL 90 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCCCCC-hHHHHHH
Confidence 34678999999999999999999888776543211 011111233668899999988777755444 2223333
Q ss_pred HccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccchhH
Q 004220 422 LESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQA 501 (767)
Q Consensus 422 l~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (767)
.+.+ .. ......|++.+.+++++|.|.|+++|++++||++|..+++.+.. ..+...
T Consensus 91 -~~~~----~~----~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~~---------------~~~~~~ 146 (414)
T PRK03655 91 -IGAP----VP----PSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLP---------------RVNRMD 146 (414)
T ss_pred -hcCC----CC----ccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc---------------CCChhH
Confidence 3221 12 24567889999999999999999999999999999999988731 123445
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHH-hCCch------hHHHHHHHHHHHHHHHhhh
Q 004220 502 YGLVGMAATLAGVCQVPLTSVLLLFEL-TQDYR------IVLPLLGAVGLSSWFTSGQ 552 (767)
Q Consensus 502 ~alvG~aA~la~~~~aPlt~~vi~~El-tg~~~------~~lP~~~a~~va~~v~~~~ 552 (767)
..++|+||.+++++|+|+++++|.+|. .+++. .+.|+ ++++++..+++..
T Consensus 147 l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~~v~~~~ 203 (414)
T PRK03655 147 WTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGALTTGLF 203 (414)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 788999999999999999999999996 45443 34444 4555566655433
No 41
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=7.1e-13 Score=122.36 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=92.5
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+....... ......+.+.|...+.+..++.++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v 78 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY---NNLDLTVGEALERRSQDFEGVRTC 78 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcc---ccccCCHHHHHhhcccCCCCCeEE
Confidence 56789999999999999999999999999999999999999999976532211 011111222111111111257899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 79 ~~~~~l~~~~~~m~~~~~~~l~Vvd~-----~~~~~Givt~~di~~ 119 (120)
T cd04641 79 SPDDCLRTIFDLIVKARVHRLVVVDE-----NKRVEGIISLSDILQ 119 (120)
T ss_pred cCCCcHHHHHHHHHhcCccEEEEECC-----CCCEEEEEEHHHhhc
Confidence 99999999999999999999999997 789999999999875
No 42
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=1.5e-12 Score=119.89 Aligned_cols=113 Identities=22% Similarity=0.258 Sum_probs=95.6
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++.+.+||+|++++++|+|+.+|+.+..... ....+..++++|.+ .+++.++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~----~~~~~~~~~~~~~~----~~~~~~v 73 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG----ADLQKVPVGVIMTR----MPNITTT 73 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC----CCccCCCHHHHhCC----CCCcEEE
Confidence 467899999999999999999999999999889999999999999876421 12335567788862 1147899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCC---CeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQR---GQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~---g~lvGIVt~~DIl~ 758 (767)
++++++.+++++|.+++.+.+||+|+ + ++++|+||++|+++
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~lpVvd~-----~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 74 TPEESVLEAAKKLIEHQVDSLPVVEK-----VDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCCcHHHHHHHHHHcCCCEeeEEeC-----CCccceEEEEEEhhheec
Confidence 99999999999999999999999996 4 69999999999874
No 43
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.44 E-value=1.7e-12 Score=118.71 Aligned_cols=113 Identities=32% Similarity=0.420 Sum_probs=97.2
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+...+.. ...+.++.++|.+ ++.+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~----~~~~~~~~~~~~~------~~~~ 70 (115)
T cd04593 1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE----AGEPSAVDEVATP------PLLT 70 (115)
T ss_pred CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc----ccccccHHHhccC------CceE
Confidence 35678899999999999999999999999999999999999999998664211 1223447788877 7899
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCC--CeEEEEEeHHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQR--GQLVGLLDRESIILA 759 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~--g~lvGIVt~~DIl~~ 759 (767)
+.+++++.++++.|.+++.+.+||+|+ + |+++|+||++|++++
T Consensus 71 v~~~~~l~~~l~~~~~~~~~~~~Vvd~-----~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 71 VHPDEPLAHALDRMASRGLRQLPVVDR-----GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred ECCCCCHHHHHHHHHHcCCceeeEEeC-----CCCCeEEEEEEhHHhhcC
Confidence 999999999999999999999999996 5 799999999999863
No 44
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.8e-12 Score=118.37 Aligned_cols=111 Identities=23% Similarity=0.324 Sum_probs=96.7
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC-CcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++.+.... ....+.++.++|.+ ++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~---~~~~~~~v~~~~~~------~~~~ 72 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEG---RDPDRVNVYEIMTK------PLIS 72 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCC---CCCCccCHHHHhcC------CCee
Confidence 57789999999999999998999999999987 89999999999998654311 12234678899977 7899
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+++++++.++++.|.+.+.+.+||+| +|+++|+|+++|+++
T Consensus 73 v~~~~~l~~~~~~~~~~~~~~~~Vvd------~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 73 VSPDMDIKYCARLMERTNIRRAPVVE------NNELIGIISLTDIFL 113 (114)
T ss_pred ECCCCCHHHHHHHHHHcCCCEeeEee------CCEEEEEEEHHHhhc
Confidence 99999999999999999999999998 589999999999975
No 45
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=1.2e-12 Score=116.99 Aligned_cols=94 Identities=18% Similarity=0.295 Sum_probs=85.1
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC-CcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|++|.+|+.+... +.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~---------------------------~~~ 54 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR---------------------------LVS 54 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee---------------------------eEE
Confidence 46789999999999999999999999999974 89999999999986431 468
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCC-CeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQR-GQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~-g~lvGIVt~~DIl~ 758 (767)
+++++++.+|+++|.+++.+++||+|+ + |+++|+||.+|+++
T Consensus 55 v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~~giit~~d~~~ 97 (98)
T cd04618 55 IHPERSLFDAALLLLKNKIHRLPVIDP-----STGTGLYILTSRRILK 97 (98)
T ss_pred eCCCCcHHHHHHHHHHCCCCEeeEEEC-----CCCCceEEeehhhhhc
Confidence 999999999999999999999999997 5 89999999999975
No 46
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=2.7e-12 Score=116.93 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=95.6
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+.+.+.++|+|++++++|+++.+|+.+...+.. ..+.++.++|.+ .+.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~-----~~~~~v~~~~~~------~~~~v 71 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGL-----SLDDPVSEVMNR------NPITA 71 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCC-----CcCCCHHHhhcC------CCEEE
Confidence 4567899999999999999989999999999999999999999987653211 123468899987 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+++.+.+||+|+ +|+++|+||++|++.
T Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~di~~ 112 (113)
T cd04607 72 KVGSSREEILALMRERSIRHLPILDE-----EGRVVGLATLDDLLS 112 (113)
T ss_pred cCCCCHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEEhHHhcc
Confidence 99999999999999999999999997 789999999999874
No 47
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=1.9e-12 Score=119.80 Aligned_cols=117 Identities=28% Similarity=0.374 Sum_probs=98.6
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhc------ccccccchhhccccCCCC
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT------SRSKKLLVSEMCSADGET 705 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~------~~~~~~~V~dvm~~~~~~ 705 (767)
+++.++++++++.++.+.|.+++++.+||+|++|+++|+++.+|+.+......... ....+..+.++|++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---- 77 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP---- 77 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC----
Confidence 56788999999999999999999999999998899999999999987653211000 01234468888887
Q ss_pred ccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004220 706 CCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (767)
Q Consensus 706 ~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~ 759 (767)
++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|++++
T Consensus 78 --~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvit~~di~~~ 124 (124)
T cd04600 78 --PVVTVRPDTPIAELVPLLADGGHHHVPVVDE-----DRRLVGIVTQTDLIAA 124 (124)
T ss_pred --CCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-----CCCEEEEEEhHHhhcC
Confidence 7899999999999999999999999999997 7899999999999863
No 48
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.40 E-value=2.3e-12 Score=137.83 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=108.3
Q ss_pred hccCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC-CcEEEEEehhhHHHHHHHHhhhcccccccchhh
Q 004220 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (767)
Q Consensus 621 l~~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (767)
+...+|+++|++ ++.++++++++.++.+.+.+++++.+||++++ ++++|+|+.+|++...... .....+.+
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~------~~~~~l~~ 137 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD------AEAFSMDK 137 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc------CCcCCHHH
Confidence 455699999998 69999999999999999999999999999876 7899999999998654211 01234778
Q ss_pred ccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 698 vm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
+|++ +.++++++++.++++.|.+++.+.+||+|+ .|.++|+||++|+++.+-.+
T Consensus 138 l~r~-------~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-----~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 138 VLRQ-------AVVVPESKRVDRMLKEFRSQRYHMAIVIDE-----FGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred HcCC-------CcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEeEHHHHHHHHhCC
Confidence 8876 568999999999999999999999999997 78999999999999988654
No 49
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=2.7e-12 Score=117.17 Aligned_cols=111 Identities=21% Similarity=0.345 Sum_probs=93.4
Q ss_pred CceEEeCCCCHHHHHHHHHHcC-CcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~-~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
++.++++++++.++.+.|.+++ .+.+||+|++++++|+++.+|+.+..... ..+.++.++|++ ...+++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~------~~~~~v~~~~~~----~~~~~~ 71 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ------WAQTTVIQVMTP----AAKLVT 71 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh------ccccchhhhhcc----cccceE
Confidence 5678999999999999997665 78999999889999999999998765321 124567888864 113568
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+.+++++.++++.|.+++.+.+||+|+ +++++|++|.+|+++
T Consensus 72 v~~~~~l~~a~~~~~~~~~~~l~Vv~~-----~~~~~Gvl~~~di~~ 113 (114)
T cd04801 72 VLSEESLAEVLKLLEEQGLDELAVVED-----SGQVIGLITEADLLR 113 (114)
T ss_pred ECCCCcHHHHHHHHHHCCCCeeEEEcC-----CCcEEEEEeccceec
Confidence 999999999999999999999999996 689999999999875
No 50
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.39 E-value=2.4e-12 Score=120.08 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=96.4
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+...... ...+.+++++|++ ++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~----~~~~~~v~~im~~------~~~~ 71 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK----VQPSDPVSKALYK------QFKR 71 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc----cCCCCcHHHHhhc------ccee
Confidence 46788999999999999999999999999999899999999999987654322 1245689999998 8999
Q ss_pred ecCCCCHHHHHHHHHh---------cCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004220 712 ATPNMNLLSALILMDR---------YGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~---------~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~ 759 (767)
+++++++.++.+++.. .+..++||+|+ +|+++|+||++|+++.
T Consensus 72 v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 72 VNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-----QEKPIGIVTKIDLLSY 123 (124)
T ss_pred cCCCCCHHHHHhhcccCCceEEEecccccccccccc-----ccceEEEEehhHhhhh
Confidence 9999999999996543 35678889986 7999999999999875
No 51
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.9e-12 Score=117.27 Aligned_cols=114 Identities=19% Similarity=0.258 Sum_probs=92.2
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC-CcEEEEEehhhHHHHHHHHhhhcccc-----cccchhhccccCCCCc
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRS-----KKLLVSEMCSADGETC 706 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~-----~~~~V~dvm~~~~~~~ 706 (767)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.+............ ....+.++|.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS----- 76 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC-----
Confidence 46788999999999999998889999999987 99999999999988764321110000 01122345655
Q ss_pred cCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHH
Q 004220 707 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESII 757 (767)
Q Consensus 707 ~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl 757 (767)
++.++++++++.+|++.|.+++.+.+||+|+ +|+++|+||++|+-
T Consensus 77 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~vGiit~~di~ 121 (123)
T cd04627 77 -DVISINGDQPLIDALHLMHNEGISSVAVVDN-----QGNLIGNISVTDVR 121 (123)
T ss_pred -CceEeCCCCCHHHHHHHHHHcCCceEEEECC-----CCcEEEEEeHHHhh
Confidence 7889999999999999999999999999997 78999999999974
No 52
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=5.8e-12 Score=114.36 Aligned_cols=110 Identities=28% Similarity=0.300 Sum_probs=96.3
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+.+++.+||+|++++++|+++.+|+.+.+.... ..+..+.++|.+ +++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~-----~~~~~v~~~~~~------~~~~v 70 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI-----DLDTPVSEIMTR------DLVTV 70 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC-----CCccCHHHhccC------CCEEE
Confidence 5678899999999999999989999999998899999999999987664221 224468888887 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
.+++++.++++.|.+++...+||+|+ +|+++|++|++|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gilt~~dl~~ 111 (112)
T cd04624 71 DPDEPVAEAAKLMRKNNIRHHLVVDK-----GGELVGVISIRDLVR 111 (112)
T ss_pred CCCCcHHHHHHHHHHcCccEEEEEcC-----CCcEEEEEEHHHhcc
Confidence 99999999999999999999999996 799999999999975
No 53
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=3.3e-12 Score=115.45 Aligned_cols=106 Identities=20% Similarity=0.294 Sum_probs=94.9
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
.++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.... .+.+++++|.+ ++.+
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~~~~~------~~~~ 65 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEKVMTK------NPIT 65 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHHHhcC------CCeE
Confidence 3578899999999999999998889999999999999999999997531 23468888877 7889
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+++++++.++++.|.+++.+.+||+|+ +|+++|++|++|+++
T Consensus 66 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~di~~ 107 (108)
T cd04596 66 VNPKTSVASVAHMMIWEGIEMLPVVDD-----NKKLLGIISRQDVLK 107 (108)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCCEEEEEEHHHhhc
Confidence 999999999999999999999999997 789999999999975
No 54
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=8.3e-12 Score=112.93 Aligned_cols=108 Identities=28% Similarity=0.347 Sum_probs=95.1
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+..... ...+.++|.+ ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~--------~~~~~~~~~~------~~~~ 67 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD--------KKSVEDIMTR------NVIT 67 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC--------ccCHHHhcCC------CCeE
Confidence 4678899999999999999999999999999999999999999998765321 1237788876 7889
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++++++++.|.+++.+.+||+++ +|+++|+||++|+.+
T Consensus 68 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~v~~~di~~ 109 (110)
T cd04605 68 ATPDEPIDVAARKMERHNISALPVVDA-----ENRVIGIITSEDISK 109 (110)
T ss_pred ECCCCcHHHHHHHHHHhCCCEEeEECC-----CCcEEEEEEHHHhhh
Confidence 999999999999999999999999997 789999999999964
No 55
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.38 E-value=6.8e-12 Score=113.06 Aligned_cols=107 Identities=33% Similarity=0.453 Sum_probs=94.8
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+... ...+++++|.+ ++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~---------~~~~v~~~~~~------~~~~ 66 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK---------EAKSLEDIMLE------DVFT 66 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh---------cCCcHhHhhcC------CceE
Confidence 45778899999999999999989999999998899999999999987542 12357888877 7889
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+++++++.++.+.|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 67 v~~~~~~~~~~~~~~~~~~~~~~vv~~-----~g~~~Gvit~~~l~~ 108 (109)
T cd04583 67 VQPDASLRDVLGLVLKRGPKYVPVVDE-----DGKLVGLITRSSLVD 108 (109)
T ss_pred ECCCCcHHHHHHHHHHcCCceeeEECC-----CCeEEEEEehHHhhc
Confidence 999999999999999999999999997 789999999999975
No 56
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.38 E-value=6.3e-12 Score=112.90 Aligned_cols=104 Identities=24% Similarity=0.217 Sum_probs=92.4
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+... ..++++|++ .+.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~~~~~------~~~~~ 64 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGDHAEP------FKVTV 64 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhhhccc------CCEEE
Confidence 5678999999999999999888999999998899999999999986421 236788877 67889
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
.+++++.++++.|.+++.+.+||+|+ +++++|+||++|+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 65 SVDDDLRIVLSRMFAHDMSWLPCVDE-----DGRYVGEVTQRSIAD 105 (106)
T ss_pred CCCCCHHHHHHHHHHCCCCeeeEECC-----CCcEEEEEEHHHhhc
Confidence 99999999999999999999999997 789999999999875
No 57
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=5.1e-12 Score=114.50 Aligned_cols=109 Identities=30% Similarity=0.307 Sum_probs=95.7
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++..|+.+...... .+.++.++|.. ++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~~~------~~~~i 69 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG------PDAPVRGVMRR------DFPTV 69 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC------CCCcHHHHhcC------CCcEE
Confidence 5678899999999999998888899999998899999999999987664211 23468888877 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+++.+.+||+|+ +|+++|++|++|+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~dl~~ 110 (111)
T cd04639 70 SPSATLDAVLRLMQQGGAPAVPVVDG-----SGRLVGLVTLENVGE 110 (111)
T ss_pred CCCCcHHHHHHHHHhcCCceeeEEcC-----CCCEEEEEEHHHhhc
Confidence 99999999999999999999999996 689999999999875
No 58
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=3.7e-12 Score=113.16 Aligned_cols=95 Identities=25% Similarity=0.314 Sum_probs=86.1
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.. .+.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~---------------------------~~~~v 54 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS---------------------------EVVTA 54 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC---------------------------CcEEe
Confidence 577899999999999999989999999999999999999999998521 15689
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~ 759 (767)
++++++.++++.|.+++.+.+||+|+ +|+++|+||++|++++
T Consensus 55 ~~~~~l~~a~~~m~~~~~~~lpVv~~-----~~~~~Giit~~di~~~ 96 (96)
T cd04614 55 TKRTTVSECAQKMKRNRIEQIPIING-----NDKLIGLLRDHDLLKP 96 (96)
T ss_pred cCCCCHHHHHHHHHHhCCCeeeEECC-----CCcEEEEEEHHHhhcC
Confidence 99999999999999999999999996 6899999999999863
No 59
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=8e-12 Score=113.61 Aligned_cols=111 Identities=21% Similarity=0.332 Sum_probs=96.1
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++.+++++.++++.|.+++.+.+||+|++++++|+++.+|+.+..... ....+.++.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~----~~~~~~~i~~~~~~------~~~~v 71 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES----EELKDAKVREVMNS------PVITI 71 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh----hhhcCCcHHHhccC------CceEE
Confidence 356789999999999999999999999999889999999999998754321 12234568888877 78999
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 72 DANDSIAKARWLMSNNNISRLPVLDD-----KGKVGGIVTEDDILR 112 (113)
T ss_pred CCCCcHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEEHHHhhc
Confidence 99999999999999999999999997 789999999999974
No 60
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.1e-11 Score=112.41 Aligned_cols=111 Identities=25% Similarity=0.341 Sum_probs=95.9
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++++.+||+|++++++|+++.+|+.+.+.... ....+.++.++|.+ ++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~---~~~~~~~~~~~~~~------~~~~v 72 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRG---ASALDTPVSEIMTR------NVITV 72 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcC---CCccccCHHHhcCC------CcEEE
Confidence 4677899999999999999999999999998899999999999998664211 11224568888877 78999
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+.+.+.+||+| +|+++|+||.+|+++
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~Vv~------~~~~~Gvit~~di~~ 112 (113)
T cd04623 73 TPDDTVDEAMALMTERRFRHLPVVD------GGKLVGIVSIGDVVK 112 (113)
T ss_pred CCCCcHHHHHHHHHHcCCCEeEEEe------CCEEEEEEEHHHhhc
Confidence 9999999999999999999999998 589999999999975
No 61
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.37 E-value=2e-12 Score=134.48 Aligned_cols=119 Identities=18% Similarity=0.282 Sum_probs=110.1
Q ss_pred cCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccc
Q 004220 623 RVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCS 700 (767)
Q Consensus 623 ~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~ 700 (767)
-++|+|+|+| +..++.+++++++-.++-.+.+++++||+|+..+++|+||.+|+.+.. ++.++..+|+
T Consensus 187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~----------~~t~ieKVMt 256 (432)
T COG4109 187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK----------PSTTIEKVMT 256 (432)
T ss_pred eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC----------CCccHHHHhc
Confidence 3589999995 899999999999999999999999999999999999999999998542 5677899999
Q ss_pred cCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhh
Q 004220 701 ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 762 (767)
Q Consensus 701 ~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~ 762 (767)
+ +|.++.+.+++..+.++|.-.+++.+||+|+ +.+++|+|||+|+++.++.
T Consensus 257 k------np~tv~~~tsVAsvaq~MiwE~iem~PVv~~-----n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 257 K------NPITVRAKTSVASVAQMMIWEGIEMLPVVDS-----NNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred c------CCeeecccchHHHHHHHHHhccceeeeEEcC-----CceEEEEEEHHHHHHHHHH
Confidence 9 8999999999999999999999999999998 8999999999999998753
No 62
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.37 E-value=4.8e-12 Score=141.69 Aligned_cols=123 Identities=19% Similarity=0.127 Sum_probs=108.1
Q ss_pred hhccCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC-CcEEEEEehhhHHHHHHHHhhhcccccccchh
Q 004220 620 LKRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVS 696 (767)
Q Consensus 620 ~l~~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~ 696 (767)
.+++++|+|+|++ ++.+++.+++++++.+.+.+++++++||++++ ++++|+|+.+|+...... ++..++
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~--------~~~~l~ 258 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK--------KNFDWQ 258 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc--------CCCCHH
Confidence 3567899999998 78999999999999999999999999999864 789999999999865421 123467
Q ss_pred hccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhh
Q 004220 697 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 762 (767)
Q Consensus 697 dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~ 762 (767)
++|++ +.+|++++++.++++.|++++.+..+|+|+ .|..+|+||.+|+++.+-.
T Consensus 259 ~~~~~-------~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-----~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 259 SLLRE-------PYFVPENKKLDDLLRDFQEKKNHLAIVVDE-----YGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred HHcCC-------CeEeCCCCcHHHHHHHHHhcCceEEEEEcC-----CCCEEEEEEHHHHHHHHhC
Confidence 77765 789999999999999999999999999998 8999999999999998843
No 63
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=6.6e-12 Score=114.23 Aligned_cols=112 Identities=23% Similarity=0.267 Sum_probs=96.3
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+.+..... ....+.++.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~--~~~~~~~v~~~~~~------~~~~v 73 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSY--HCDGVATVRDIMTT------EVLTV 73 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhh--ccCCCccHHHHhcc------CceEE
Confidence 56788999999999999998888899999999999999999999876643221 11234568888887 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Gvit~~di~~ 113 (114)
T cd04629 74 SPDDSIVDLAQLMLKAKPKRYPVVD------DGKLVGQISRRDVLR 113 (114)
T ss_pred CCCCcHHHHHHHHHHhCCCccCEEE------CCEEEEEEEHHHHhc
Confidence 9999999999999999999999999 579999999999975
No 64
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=5.2e-12 Score=117.69 Aligned_cols=115 Identities=22% Similarity=0.217 Sum_probs=91.9
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccc---------cchhhccccCC
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKK---------LLVSEMCSADG 703 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~---------~~V~dvm~~~~ 703 (767)
++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+++.............. ....+.|.+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR-- 79 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC--
Confidence 467899999999999999999999999999999999999999998865321110000000 011233444
Q ss_pred CCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 704 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 704 ~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++.++++++++.++++.|.+++.+.+||+|+ +++++|+||++|+++
T Consensus 80 ----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-----~~~~~Giit~~dil~ 125 (126)
T cd04642 80 ----PLITCTPSSTLKEVITKLVANKVHRVWVVDE-----EGKPIGVITLTDIIS 125 (126)
T ss_pred ----CCeEECCCCcHHHHHHHHHHhCCcEEEEECC-----CCCEEEEEEHHHHhc
Confidence 6889999999999999999999999999997 789999999999975
No 65
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=5.6e-12 Score=116.81 Aligned_cols=115 Identities=26% Similarity=0.310 Sum_probs=96.9
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC-CcEEEEEehhhHHHHHHHHhhhc-------ccccccchhhccccCCC
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKT-------SRSKKLLVSEMCSADGE 704 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~-g~lvGiVt~~dL~~~l~~~~~~~-------~~~~~~~V~dvm~~~~~ 704 (767)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.+.+....... ....+.++.++|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR--- 78 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC---
Confidence 56788999999999999999999999999987 99999999999997764221100 01123467888877
Q ss_pred CccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 705 TCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 705 ~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+++++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 79 ---~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~~Gvit~~di~~ 124 (125)
T cd04631 79 ---NVITITPDDSIKDAAELMLEKRVGGLPVVDD-----DGKLVGIVTERDLLK 124 (125)
T ss_pred ---CceEeCCCCcHHHHHHHHHHcCCceEEEEcC-----CCcEEEEEEHHHhhc
Confidence 7899999999999999999999999999996 689999999999986
No 66
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=9.6e-12 Score=112.80 Aligned_cols=109 Identities=22% Similarity=0.279 Sum_probs=94.7
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|+....... ...+..+.++|.+ ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-----~~~~~~v~~~~~~------~~~~v 70 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE-----SFLEKKVFNIVSQ------DVFYV 70 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----ccccCcHHHHhcC------CcEEE
Confidence 567889999999999999999999999999889999999999998754321 1123468888877 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~~di~~ 110 (111)
T cd04626 71 NEEDTIDEALDIMREKQIGRLPVVD------DNKLIGVVRTKDILD 110 (111)
T ss_pred cCCCcHHHHHHHHHHcCCCeeeEeE------CCEEEEEEEhHHhcc
Confidence 9999999999999999999999999 579999999999874
No 67
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=7.1e-12 Score=114.39 Aligned_cols=113 Identities=21% Similarity=0.223 Sum_probs=94.0
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhc-ccccccchhhccccCCCCccCCeE
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-SRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~-~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+......... ....+.+++++|.+ ++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~ 75 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT------DVPV 75 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC------CCce
Confidence 5678999999999999999999999999998899999999999988764211100 00114568889987 7889
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+++++++.++++.|.+.+ .+||+|+ +|+++|++|++|+++
T Consensus 76 v~~~~~l~~a~~~~~~~~--~~~Vv~~-----~~~~~Gvit~~dil~ 115 (116)
T cd04643 76 IIDDADIEEILHLLIDQP--FLPVVDD-----DGIFIGIITRREILK 115 (116)
T ss_pred ecCCCCHHHHHHHHhcCC--ceeEEeC-----CCeEEEEEEHHHhhc
Confidence 999999999999998865 5999997 789999999999986
No 68
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.35 E-value=5e-12 Score=139.46 Aligned_cols=147 Identities=28% Similarity=0.369 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHh-cccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHH
Q 004220 395 MGGLAVGLIALMF-PEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMA 473 (767)
Q Consensus 395 lggl~vg~i~~~~-P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~ 473 (767)
+++++++++...+ |+..|+|.+++.+.+++. ....-....+.|++.+.+++++|.|.|+++|++.+|+++|+.
T Consensus 1 ~~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~------~~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~ 74 (355)
T PF00654_consen 1 IGGLLSGLLWKKFAPEAAGSGIPEVKAALRGK------SGRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSW 74 (355)
T ss_dssp -HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTS------S---HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHCCccCCCCHHHHHHHHhCC------CCCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHH
Confidence 4678888887776 999999999999888765 222456778999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHh
Q 004220 474 YGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWFTS 550 (767)
Q Consensus 474 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg---~~~~~lP~~~a~~va~~v~~ 550 (767)
+++.++.. +......+..+|++|.+++++++|+++++|.+|... ++..+.|.++++++++.+.+
T Consensus 75 ~~~~~~~~-------------~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~ 141 (355)
T PF00654_consen 75 LGRRFRLS-------------RNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSR 141 (355)
T ss_dssp HHHHTT---------------CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHhhccc-------------chHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHH
Confidence 99987631 112256699999999999999999999999999864 56799999999999998887
Q ss_pred hhccCcchhh
Q 004220 551 GQMRRRDVKE 560 (767)
Q Consensus 551 ~~~~~~~~~~ 560 (767)
.+..+++.|+
T Consensus 142 ~~~~~~~~f~ 151 (355)
T PF00654_consen 142 LLFGNHPIFG 151 (355)
T ss_dssp HHHTSS-SS-
T ss_pred HHcCcCcccc
Confidence 7766555554
No 69
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=8.5e-12 Score=118.22 Aligned_cols=114 Identities=19% Similarity=0.279 Sum_probs=96.3
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhc-------------------cccccc
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-------------------SRSKKL 693 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~-------------------~~~~~~ 693 (767)
++.++++++++.++++.|.+.+.+.+||+|++++++|+++..|+.+......... ....+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 4678899999999999999999999999999999999999999998664211100 001245
Q ss_pred chhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 694 LVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 694 ~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+++++|.+ ++..+.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 82 ~v~~~~~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~------~~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAEDIMTE------EIITVSPNDDVVDAAKLMLEANISGLPVVD------NDNIVGVITKTDICR 134 (135)
T ss_pred cHHHhcCC------CCeEECCCCCHHHHHHHHHHcCCCEEEEEe------CCEEEEEEEHHHHhh
Confidence 68899987 788999999999999999999999999998 589999999999986
No 70
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.35 E-value=4e-12 Score=144.33 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=107.1
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHH-----cCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchh
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLA-----EKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVS 696 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~-----~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~ 696 (767)
...+++++|++++.++++++|+.++++.|++ ++...++|+|++++++|+|+.+|+... .++.+++
T Consensus 129 ~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a----------~~~~~v~ 198 (449)
T TIGR00400 129 SDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA----------KPEEILS 198 (449)
T ss_pred CcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC----------CCCCcHH
Confidence 4468999999999999999999999999985 345678999999999999999998742 1234699
Q ss_pred hccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 697 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 697 dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
++|++ ++.++++++++.++++.|.+++...+||||+ +|+++|+||.+|+++.+.++
T Consensus 199 ~im~~------~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-----~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 199 SIMRS------SVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-----EGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred HHhCC------CCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-----CCeEEEEEEHHHHHHHHHhh
Confidence 99988 7889999999999999999999999999997 89999999999999988765
No 71
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.35 E-value=1e-11 Score=112.85 Aligned_cols=111 Identities=27% Similarity=0.341 Sum_probs=96.5
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
+++++++++++.++.+.+.+.+.+.+||+|++++++|+++.+++.+.+.... .....++.++|.+ ++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~----~~~~~~v~~~~~~------~~~~v 72 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL----DILTLPVADVMTR------NPKTI 72 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----ccccCCHHHhhcc------CCeEE
Confidence 4667899999999999998888899999998899999999999998764221 1223468899987 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.+++++|.+++.+.+||+|+ +++++|+||.+|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~iG~it~~di~~ 113 (114)
T cd04604 73 DPDALAAEALELMEENKITALPVVDD-----NGRPVGVLHIHDLLR 113 (114)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEEEHHHhhc
Confidence 99999999999999999999999997 789999999999975
No 72
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=8.1e-12 Score=116.46 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=91.8
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHH--HhhhcccccccchhhccccCCCCccCCe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY--AQAKTSRSKKLLVSEMCSADGETCCVPC 710 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~--~~~~~~~~~~~~V~dvm~~~~~~~~~~~ 710 (767)
++.++.+++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.... .........+.+++++|++ +..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~ 75 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP------KED 75 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc------hhh
Confidence 46788999999999999998888999999988999999999999863210 0000012345668899976 333
Q ss_pred E--e----cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCC-CeEEEEEeHHHHHH
Q 004220 711 T--A----TPNMNLLSALILMDRYGVNQVPVVMEHIPGQR-GQLVGLLDRESIIL 758 (767)
Q Consensus 711 ~--V----~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~-g~lvGIVt~~DIl~ 758 (767)
. + .+++++.++++.|.+++.+.+||+|+ + |+++|+||++|+++
T Consensus 76 ~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-----~~~~~~G~it~~di~~ 125 (126)
T cd04640 76 LKALDLEELENASVGDVVETLKASGRQHALVVDR-----EHHQIRGIISTSDIAR 125 (126)
T ss_pred hccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-----CCCEEEEEEeHHHHhh
Confidence 3 2 36899999999999999999999996 5 79999999999975
No 73
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.35 E-value=1.1e-11 Score=112.43 Aligned_cols=108 Identities=22% Similarity=0.218 Sum_probs=92.8
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC-CcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+...... ....+.++|. ++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~------~~~~~~~~~~-------~~~~ 68 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE------EDLDLRDLLR-------PPLF 68 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC------CcCCHHHHhc-------CCee
Confidence 56789999999999999998889999999988 99999999999998764211 1134666554 4788
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+.+++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 69 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~di~~ 110 (111)
T cd04590 69 VPESTPLDDLLEEMRKERSHMAIVVDE-----YGGTAGLVTLEDILE 110 (111)
T ss_pred cCCCCcHHHHHHHHHhcCCcEEEEEEC-----CCCEEEEeEHHHhhc
Confidence 999999999999999999999999997 799999999999975
No 74
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=9.6e-12 Score=114.72 Aligned_cols=115 Identities=26% Similarity=0.355 Sum_probs=97.4
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhc-----ccccccchhhccccCCCCcc
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-----SRSKKLLVSEMCSADGETCC 707 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~-----~~~~~~~V~dvm~~~~~~~~ 707 (767)
++.++.+++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+......... ....+.++.++|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 75 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT------ 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC------
Confidence 4678899999999999999999999999998899999999999988654211100 01235568888877
Q ss_pred CCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 708 ~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++.++++++++.++++.|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~dl~~ 121 (122)
T cd04803 76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-----KGTLVGIITRSDFLR 121 (122)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-----CCCEEEEEEHHHhhc
Confidence 7889999999999999999999999999996 689999999999975
No 75
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6.1e-12 Score=116.03 Aligned_cols=115 Identities=27% Similarity=0.347 Sum_probs=95.9
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHH-----hhhcccccccchhhccccCCCCcc
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA-----QAKTSRSKKLLVSEMCSADGETCC 707 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~-----~~~~~~~~~~~V~dvm~~~~~~~~ 707 (767)
++.++++++++.++.+.|.+++++.+||+|++++++|+++.+|+++..... ........+..+.++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST------ 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC------
Confidence 567899999999999999998999999999899999999999998642100 000001234567888877
Q ss_pred CCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 708 ~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++..+++++++.++++.|.+++.+.+||+|+ +|+++|++|++|+++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvit~~dl~~ 121 (122)
T cd04635 76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNE-----KDQLVGIVDRHDVLK 121 (122)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCcEEEEEEhHHhhc
Confidence 7899999999999999999999999999997 789999999999986
No 76
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.34 E-value=1.3e-11 Score=112.08 Aligned_cols=112 Identities=28% Similarity=0.399 Sum_probs=96.6
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+...+. ...++.++.++|++ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~----~~~~~~~v~~~~~~------~~~~v 71 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDP----SLYDLVVASDIMTK------PPVVV 71 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcc----cccccEEHHHhccC------CCcEE
Confidence 567899999999999999999999999999889999999999998765321 11223678899988 78999
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+.+.+.+||+|++ +++++|++|.+|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~----~~~~~Gvvt~~di~~ 113 (114)
T cd04613 72 YPEDSLEDALKKFEDSDYEQLPVVDDD----PGKLLGILSRSDLLS 113 (114)
T ss_pred cCCCCHHHHHHHHhhCCccEeeEEeCC----CCEEEEEEEhHHhhc
Confidence 999999999999999999999999831 378999999999975
No 77
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.34 E-value=1.5e-11 Score=111.20 Aligned_cols=108 Identities=25% Similarity=0.321 Sum_probs=94.5
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+...... ...++.++|.. ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~~~------~~~~v 68 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGL------ELAKVKDVMTK------DVITI 68 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccc------cccCHHHHhcC------CceEE
Confidence 5678899999999999999999999999998 99999999999998653211 12557888876 78999
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~~dl~~ 109 (110)
T cd04588 69 DEDEQLYDAIRLMNKHNVGRLIVTDD-----EGRPVGIITRTDILR 109 (110)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEEhHHhhc
Confidence 99999999999999999999999996 789999999999975
No 78
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.34 E-value=4.7e-12 Score=139.47 Aligned_cols=127 Identities=25% Similarity=0.252 Sum_probs=115.8
Q ss_pred hccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccc
Q 004220 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCS 700 (767)
Q Consensus 621 l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~ 700 (767)
+-..++.++|+.+++++++++++.+|.+.|.+++.+.+.++|+++...|+||++|+...... +....+.+|+++|+
T Consensus 146 ~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~----~g~~~~~~V~evmT 221 (610)
T COG2905 146 FILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIA----DGRSKTQKVSEVMT 221 (610)
T ss_pred HHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHh----cCCCcccchhhhhc
Confidence 34468999999999999999999999999999999999999999999999999999988753 23446788999999
Q ss_pred cCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 701 ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 701 ~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
. ++.+|+.++.+.||+-+|.+++++++||++ +|+++|+||.+||++..+.+
T Consensus 222 ~------p~~svd~~~~~feAml~m~r~~I~hl~V~e------~gq~~Gilt~~dIl~l~s~~ 272 (610)
T COG2905 222 S------PVISVDRGDFLFEAMLMMLRNRIKHLPVTE------DGQPLGILTLTDILRLFSQN 272 (610)
T ss_pred c------CceeecCcchHHHHHHHHHHhCCceeeeec------CCeeeEEeeHHHHHHhhCCC
Confidence 9 899999999999999999999999999999 79999999999999988754
No 79
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=2.2e-11 Score=110.26 Aligned_cols=108 Identities=24% Similarity=0.328 Sum_probs=95.0
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++.+++.++++.++.+.|.+.+.+.+||+|+ ++++|+++..|+.+..... ..+.++.++|.+ ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~------~~~~~~~~~~~~------~~~~ 68 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG------LGHAPVKDYMST------DVVT 68 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc------cccCcHHHHhcC------CCEE
Confidence 46788999999999999999888999999998 9999999999998765311 134668889987 7899
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+++++++.+++++|.+++.+.+||+| +|+++|+||++|+++
T Consensus 69 v~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~~Gvvt~~di~~ 109 (110)
T cd04595 69 VPPDTPLSEVQELMVEHDIGRVPVVE------DGRLVGIVTRTDLLR 109 (110)
T ss_pred ECCCCcHHHHHHHHHHcCCCeeEEEe------CCEEEEEEEhHHhhc
Confidence 99999999999999999999999998 579999999999975
No 80
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.7e-11 Score=114.38 Aligned_cols=117 Identities=25% Similarity=0.278 Sum_probs=95.8
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhh---------cccccccchhhccccCC
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK---------TSRSKKLLVSEMCSADG 703 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~---------~~~~~~~~V~dvm~~~~ 703 (767)
++.++.+++++.++++.|.+.+.+.+||+|++++++|++|.+|+.+.+...... .....+.++.++|++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS-- 79 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC--
Confidence 467889999999999999999999999999999999999999998765321100 011234568888877
Q ss_pred CCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 704 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 704 ~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+++++++++++.++++.|.+.+.+.+||++++ ++++++|+||++|+++
T Consensus 80 ----~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~---~~~~~~Gvit~~di~~ 127 (128)
T cd04632 80 ----PVITASPNDSVRDAVDRMLENDDSSVVVVTPD---DDTKVVGILTKKDVLR 127 (128)
T ss_pred ----CCceECCCCcHHHHHHHHHhCCCCeEeEeccC---CCCcEEEEEEhHhhhc
Confidence 78899999999999999999999999998520 1589999999999975
No 81
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.6e-11 Score=112.06 Aligned_cols=110 Identities=27% Similarity=0.445 Sum_probs=91.8
Q ss_pred CceEEeCCCCHHHHHHHHHHcC-CcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~-~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
++.++++++++.++.+.|.+++ ...++|+| +++++|+++.+|+.+..... ....+.++.++|.+ ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~----~~~~~~~i~~~~~~------~~~~ 70 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIG----KDLSDLPIGEVMTQ------PVVT 70 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcC----CCccccCHHHhcCC------CcEE
Confidence 4667899999999999998877 66777777 58999999999998765321 11234568888877 6788
Q ss_pred ecCC--CCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPN--MNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d--~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++ +++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 71 v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Gvit~~dl~~ 114 (115)
T cd04620 71 LQESEIQDIFTALSLFRQHQIRHLPVLDD-----QGQLIGLVTAESIRQ 114 (115)
T ss_pred EecccccCHHHHHHHHHHhCCceEEEEcC-----CCCEEEEEEhHHhhc
Confidence 8887 78999999999999999999997 799999999999986
No 82
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=9e-12 Score=117.54 Aligned_cols=115 Identities=30% Similarity=0.388 Sum_probs=96.3
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhh------------------hccccccc
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA------------------KTSRSKKL 693 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~------------------~~~~~~~~ 693 (767)
+++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+....... ........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 467889999999999999999999999999999999999999999875431100 00011235
Q ss_pred chhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 694 LVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 694 ~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
.+.++|.+ ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 82 ~v~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd------~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTR------PVVTVGEDTPLAEVAELMEEHRIKRVPVVR------GGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCC------CceEeCCCCcHHHHHHHHHHcCCCccCEec------CCEEEEEEEhHhhhc
Confidence 68888877 789999999999999999999999999999 589999999999975
No 83
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.6e-11 Score=110.01 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=92.5
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++...++|.| +++++|+++.+|+.+..... .....+.+++++|++ ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~---~~~~~~~~v~~~~~~------~~~~v 71 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQH---GAGVLDTTVRAIMNP------EPIVA 71 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhc---CCchhcCCHHHHhCC------CCeEE
Confidence 567889999999999999887877777665 59999999999999776421 011234568899987 68899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.+++++|.+++.+.+||+| +|+++|+||++|+++
T Consensus 72 ~~~~~l~~a~~~m~~~~~~~l~Vv~------~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 72 SPDDSIDEVRRLMVERHLRYLPVLD------GGTLLGVISFHDVAK 111 (112)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeEEE------CCEEEEEEEHHHhhc
Confidence 9999999999999999999999998 589999999999975
No 84
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.32 E-value=1e-11 Score=140.44 Aligned_cols=123 Identities=19% Similarity=0.250 Sum_probs=109.1
Q ss_pred hhhhccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhh
Q 004220 618 EELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (767)
Q Consensus 618 ~~~l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (767)
.+..+.+++.++|.+++.++.+++++.++.+.|.+++.+.+||+| +++++|+||.+|+...- .+.++++
T Consensus 82 ae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~----------~~~~V~d 150 (475)
T TIGR01303 82 KQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD----------RFTQVRD 150 (475)
T ss_pred HHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC----------CCCCHHH
Confidence 445778899999999999999999999999999999999999988 47999999999985321 2346999
Q ss_pred ccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhh
Q 004220 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 762 (767)
Q Consensus 698 vm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~ 762 (767)
+|++ ++.++++++++.+|+++|.+++.+.+||+|+ +|+++|+||++||++....
T Consensus 151 IMt~------~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-----~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 151 IMST------DLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-----DGTLAGILTRTGALRATIY 204 (475)
T ss_pred HccC------CceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHhC
Confidence 9998 8999999999999999999999999999997 7899999999999987654
No 85
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.32 E-value=3.4e-11 Score=109.20 Aligned_cols=109 Identities=23% Similarity=0.307 Sum_probs=94.2
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
+++++++++++.++++.|.+++.+.++|+|+ ++++|+++.+|+.+..... ....+.++.++|.+ +...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~----~~~~~~~i~~~~~~------~~~~v 70 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLD----GLPSSTPVGEIATF------PLITV 70 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcC----CCCCCCCHHHHhCC------CcEEE
Confidence 4678899999999999999888899999997 8999999999998765321 11235568888987 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+++.+.+||+| +++++|+||++|+++
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~~dl~~ 110 (111)
T cd04589 71 DPDDFLFNALLLMTRHRIHRVVVRE------GGEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCcHHHHHHHHHHhCccEEEEee------CCEEEEEEEhHHhhc
Confidence 9999999999999999999999998 579999999999975
No 86
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.32 E-value=8.3e-12 Score=132.42 Aligned_cols=114 Identities=27% Similarity=0.336 Sum_probs=101.6
Q ss_pred cCccccccccC-ceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhcccc
Q 004220 623 RVFVSEVMRTR-YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSA 701 (767)
Q Consensus 623 ~~~V~dvM~~~-~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~ 701 (767)
.++|+|+|+++ +.++++++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+.... ....+.+++++|.+
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-----~~~~~~~v~~im~~ 228 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-----GGSLKSEVRDFMTL 228 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-----CCcccCcHHHhCCC
Confidence 47999999998 9999999999999999999899999999999999999999999876431 11235679999988
Q ss_pred CCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEe
Q 004220 702 DGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLD 752 (767)
Q Consensus 702 ~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt 752 (767)
++.++++++++.+|++.|.+++.+.+||+|+ +|+++|+|+
T Consensus 229 ------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~g~l~GvI~ 268 (268)
T TIGR00393 229 ------GPKTFKLDALLLEALEFLERRKITSLVVVDD-----HNKVLGVLH 268 (268)
T ss_pred ------CCeEECCCCcHHHHHHHHHHcCCcEEEEECC-----CCeEEEEEC
Confidence 7889999999999999999999999999997 789999985
No 87
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.31 E-value=1.7e-11 Score=140.00 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=106.8
Q ss_pred hhhhccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhh
Q 004220 618 EELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (767)
Q Consensus 618 ~~~l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (767)
...++.++++++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|+.+.+.... ...+.++.+
T Consensus 329 ~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----~~~~~~v~~ 404 (454)
T TIGR01137 329 FDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK----ANPDDAVSK 404 (454)
T ss_pred HHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC----CCcCCCHHH
Confidence 4458899999999999999999999999999999999999999998899999999999998664211 122446889
Q ss_pred ccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHh
Q 004220 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (767)
Q Consensus 698 vm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~ 760 (767)
+|++ ++.++++++++.+++++|.+++ .+||++ +++++|+||++|+++.+
T Consensus 405 im~~------~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-----~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 405 VMSK------KFIQIGEGEKLSDLSKFLEKNS---SAIVTE-----EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred hcCC------CCeEECCcCcHHHHHHHHHHCC---eeEEEE-----CCEEEEEEEHHHHHHhh
Confidence 9987 7889999999999999998864 355655 78999999999999875
No 88
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.31 E-value=1.8e-11 Score=111.22 Aligned_cols=111 Identities=33% Similarity=0.421 Sum_probs=94.3
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+...... ....+.++.++|.+ ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~---~~~~~~~v~~i~~~------~~~~v 71 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQG---LDPESTLVERVMTP------NPVCA 71 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcC---CCcCcCCHHHhcCC------CCeEE
Confidence 5678899999999999999888899999997 99999999999985443211 11112568899887 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
.+++++.++++.|.+++.+++||+|+ +++++|+||.+|+++
T Consensus 72 ~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 72 TSDTPVLEALHLMVQGKFRHLPVVDK-----SGQVVGLLDVTKLTH 112 (113)
T ss_pred cCCCCHHHHHHHHHHcCCCcccEECC-----CCCEEEEEEHHHhcc
Confidence 99999999999999999999999996 789999999999975
No 89
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.31 E-value=8.6e-12 Score=141.96 Aligned_cols=120 Identities=19% Similarity=0.133 Sum_probs=103.3
Q ss_pred Cccccccc---cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCC---CCcEEEEEehhhHHHHHHHHhhhcccccccchhh
Q 004220 624 VFVSEVMR---TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (767)
Q Consensus 624 ~~V~dvM~---~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (767)
.+|+++|. .+.+++++++|+.++++.|.+++++.+||+|+ +++++|+||.+|++... ...+.++++
T Consensus 94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--------~~~~~~V~d 165 (502)
T PRK07107 94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--------MSLDTKVKD 165 (502)
T ss_pred HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--------cCCCCCHHH
Confidence 46777776 35679999999999999999999999999997 68999999999997421 124567999
Q ss_pred ccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHh
Q 004220 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (767)
Q Consensus 698 vm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~ 760 (767)
+|++ .+++.++++++++.+|+++|.+++++.+||+|+ +++++|+||++|+++..
T Consensus 166 IMt~----~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-----~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 166 FMTP----FEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-----NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HhCC----CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEhHHHHhcc
Confidence 9985 225788999999999999999999999999997 78999999999999864
No 90
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.31 E-value=2.4e-11 Score=109.88 Aligned_cols=109 Identities=27% Similarity=0.334 Sum_probs=95.1
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+...... . .+.+++++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~----~-~~~~v~~~~~~------~~~~~ 69 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGP----D-LQTPVGEVMSS------PLLTV 69 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCC----C-CCcCHHHhcCC------CceEE
Confidence 4678899999999999999988999999987 89999999999987764211 1 35668888877 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+.+.+.+||+|+ +|+++|+|+++|+++
T Consensus 70 ~~~~~l~~~l~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~~di~~ 110 (111)
T cd04611 70 PADTSLYDARQLMREHGIRHLVVVDD-----DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEECC-----CCcEEEEEEhHHhhc
Confidence 99999999999999999999999996 789999999999975
No 91
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.31 E-value=2e-11 Score=111.50 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=91.2
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCC---CCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCC
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVP 709 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~ 709 (767)
++.++.+++++.++.+.|.+++.+.+||+|+ +++++|+++.+|+..... .+.+++++|.+ .+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~---------~~~~v~~~~~~------~~ 67 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD---------SETPLSEVMTP------RE 67 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc---------cCCCHHHhcCC------Cc
Confidence 5678899999999999999888899999997 789999999999874321 12458889887 56
Q ss_pred eEecC--CCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 710 CTATP--NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 710 ~~V~~--d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
..+.. ++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 68 ~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-----~~~~~Gvit~~di~~ 113 (114)
T cd04602 68 VLVVAPTGITLEEANEILRESKKGKLPIVND-----DGELVALVTRSDLKK 113 (114)
T ss_pred eEEECCCCCCHHHHHHHHHhcCCCceeEECC-----CCeEEEEEEHHHhhc
Confidence 77766 999999999999999999999997 789999999999875
No 92
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.31 E-value=2.2e-11 Score=111.86 Aligned_cols=114 Identities=28% Similarity=0.368 Sum_probs=95.9
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcc------cccccchhhccccCCCCc
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTS------RSKKLLVSEMCSADGETC 706 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~------~~~~~~V~dvm~~~~~~~ 706 (767)
++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+.......... ...+.++.++|++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR----- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC-----
Confidence 4678899999999999999999999999997 999999999999987642111000 0123567888877
Q ss_pred cCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 707 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 707 ~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvvt~~di~~ 121 (122)
T cd04585 76 -DPITVSPDASVEEAAELMLERKISGLPVVDD-----QGRLVGIITESDLFR 121 (122)
T ss_pred -CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-----CCcEEEEEEHHHhhh
Confidence 7899999999999999999999999999996 789999999999986
No 93
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.31 E-value=3.5e-11 Score=108.97 Aligned_cols=110 Identities=30% Similarity=0.426 Sum_probs=94.3
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+..... ....+.++.++|.. ++++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~----~~~~~~~i~~~~~~------~~~~ 69 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAE----GLDPDTPVSEVMTA------PPIT 69 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhcc----CCCccCCHHHHhCC------CCeE
Confidence 35678899999999999999888899999997 9999999999998754321 11123568888877 7899
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+++++++.++++.|.+++.+.+||+| +|+++|++|++|+++
T Consensus 70 v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Giit~~di~~ 110 (111)
T cd04800 70 IPPDATVFEALLLMLERGIHHLPVVD------DGRLVGVISATDLLR 110 (111)
T ss_pred ECCCCcHHHHHHHHHHcCCCeeeEeE------CCEEEEEEEHHHhhc
Confidence 99999999999999999999999999 589999999999975
No 94
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.31 E-value=2.6e-11 Score=109.60 Aligned_cols=110 Identities=31% Similarity=0.501 Sum_probs=94.8
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+...... .....+.++|.+ ++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~-----~~~~~~~~~~~~------~~~~ 68 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGR-----EATVLVGDVMTR------DPVT 68 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCc-----ccccCHHHhccC------CCeE
Confidence 35678999999999999999888899999998 99999999999987653211 112457788877 7899
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++
T Consensus 69 v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~~di~~ 110 (111)
T cd04612 69 ASPDETLRDALKRMAERDIGRLPVVDD-----SGRLVGIVSRSDLLR 110 (111)
T ss_pred ECCCCCHHHHHHHHHhCCCCeeeEEcC-----CCCEEEEEEHHHhhh
Confidence 999999999999999999999999996 799999999999975
No 95
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=2.9e-11 Score=109.81 Aligned_cols=111 Identities=24% Similarity=0.263 Sum_probs=93.8
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+....... ........+.++|.+ ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~---~~~~~~~~~~~~~~~------~~~~v 71 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAE---GRDPDTTTVGDVMTR------GVVTV 71 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhc---cCCcccCCHHHhccC------CccEE
Confidence 5678999999999999999999999999997 9999999999987332211 111223348888887 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
.+++++.++++.|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~~di~~ 112 (113)
T cd04622 72 TEDDDVDEAARLMREHQVRRLPVVDD-----DGRLVGIVSLGDLAR 112 (113)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeEECC-----CCcEEEEEEHHHhhc
Confidence 99999999999999999999999996 789999999999975
No 96
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2.7e-11 Score=113.86 Aligned_cols=114 Identities=23% Similarity=0.328 Sum_probs=95.3
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcc----------------cccccchh
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTS----------------RSKKLLVS 696 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~----------------~~~~~~V~ 696 (767)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+.......... .....++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 56788999999999999998889999999999999999999999887643211000 01112677
Q ss_pred hccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 697 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 697 dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++|.+ ++..+.+++++.+++++|.+.+.+.+||+| +|+++|++|++|+++
T Consensus 82 ~~~~~------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~iGvit~~dl~~ 131 (132)
T cd04636 82 EIMTK------KVITVDEDTTIEDVARIMSKKNIKRLPVVD------DGKLVGIISRGDIIR 131 (132)
T ss_pred HhccC------CceEECCCCcHHHHHHHHHHCCCCeeEEEE------CCEEEEEEEHHHhhc
Confidence 88877 789999999999999999999999999999 589999999999975
No 97
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=1.6e-11 Score=111.06 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=89.1
Q ss_pred EeCCCCHHHHHHHHHHcC-----CcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 637 VLMTTLLIEALTLMLAEK-----QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 637 V~~~~tl~eal~~m~~~~-----~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++++++.++++.|.+++ +..+||+|++++++|+++.+|+.+.. .+.+++++|.+ ++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~----------~~~~v~~~~~~------~~~~ 65 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD----------PDTPVSDIMDT------DVIS 65 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC----------CcchHHHHhCC------CCeE
Confidence 578899999999998776 36899999889999999999987520 23458888877 7889
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~ 759 (767)
+.+++++.++++.|.+.+.+.+||+|+ +++++|+||++|++++
T Consensus 66 i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~dll~~ 108 (109)
T cd04606 66 VSADDDQEEVARLFEKYDLLALPVVDE-----EGRLVGIITVDDVIDV 108 (109)
T ss_pred EcCCCCHHHHHHHHHHcCCceeeeECC-----CCcEEEEEEhHHhhhh
Confidence 999999999999999999999999997 7899999999999975
No 98
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.29 E-value=2.1e-11 Score=138.17 Aligned_cols=121 Identities=26% Similarity=0.328 Sum_probs=107.6
Q ss_pred hccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC---CcEEEEEehhhHHHHHHHHhhhcccccccchhh
Q 004220 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (767)
Q Consensus 621 l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~---g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (767)
.+-.+.++.|.+++.++++++++.++++.|.+++++.+||+|++ ++++|+||.+|+.... ..+.++++
T Consensus 77 ~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~---------~~~~~V~d 147 (450)
T TIGR01302 77 KRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK---------DKGKPVSE 147 (450)
T ss_pred hhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------cCCCCHHH
Confidence 33457889999999999999999999999999999999999987 7999999999997532 12456899
Q ss_pred ccc-cCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 698 MCS-ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 698 vm~-~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
+|+ + ++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++...
T Consensus 148 vm~~~------~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-----~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 148 VMTRE------EVITVPEGIDLEEALKVLHEHRIEKLPVVDK-----NGELVGLITMKDIVKRRK 201 (450)
T ss_pred hhCCC------CCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-----CCcEEEEEEhHHhhhccc
Confidence 998 4 6899999999999999999999999999998 899999999999998764
No 99
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.29 E-value=2.2e-11 Score=109.91 Aligned_cols=107 Identities=29% Similarity=0.314 Sum_probs=92.5
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++.+++.++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.... ..+.++.++|.+ .+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~---------~~~~~v~~~~~~------~~~~ 66 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET---------DLDKPVSEVMTP------ENLL 66 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc---------cCCCCHHHhccc------CceE
Confidence 4567889999999999999989999999999889999999999986431 123568888876 5666
Q ss_pred ecC-CCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATP-NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~-d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+.+ ++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~~dil~ 109 (110)
T cd04601 67 TTVEGTSLEEALELLHEHKIEKLPVVDD-----EGKLKGLITVKDIEK 109 (110)
T ss_pred EecCCCCHHHHHHHHHHhCCCeeeEEcC-----CCCEEEEEEhhhhhc
Confidence 777 999999999999999999999997 789999999999975
No 100
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.28 E-value=2.6e-11 Score=138.32 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=103.8
Q ss_pred cccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCC---CCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccC
Q 004220 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSAD 702 (767)
Q Consensus 626 V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~ 702 (767)
.+..|.++++++++++|+.++++.|.+++++.+||+|+ +++++|+||.+|+.... ..+.+++++|++
T Consensus 102 ~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~eIMt~- 171 (505)
T PLN02274 102 RRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSEVMTS- 171 (505)
T ss_pred ccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHHHhcc-
Confidence 34458899999999999999999999999999999997 48999999999997432 135679999987
Q ss_pred CCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhh
Q 004220 703 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 762 (767)
Q Consensus 703 ~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~ 762 (767)
..+..++++++++.+++++|.+++.+.+||||+ +++++|+||++|+++....
T Consensus 172 ---~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-----~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 172 ---DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-----DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ---CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHhhC
Confidence 112779999999999999999999999999997 7899999999999998754
No 101
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=6.4e-11 Score=107.46 Aligned_cols=110 Identities=27% Similarity=0.398 Sum_probs=93.7
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++++.|.+++.+.+||+|++ +++|+++.+|+.+.+.... ....+..+.++|++ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~---~~~~~~~~~~~~~~------~~~~v 71 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRN---LKPREVPVGEVMST------PLITI 71 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhcc---CCcccCCHHHhcCC------CcEEE
Confidence 46778999999999999999889999999865 9999999999998654211 11234568888877 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+++.+.+||+|+ + +++|+|+++|+++
T Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~-~~~Gvi~~~di~~ 111 (112)
T cd04802 72 DPNASLNEAAKLMAKHGIKRLPVVDD-----D-ELVGIVTTTDIVM 111 (112)
T ss_pred CCCCCHHHHHHHHHHcCCCeeEEeeC-----C-EEEEEEEhhhhhc
Confidence 99999999999999999999999995 4 9999999999974
No 102
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.28 E-value=4.5e-11 Score=109.96 Aligned_cols=114 Identities=28% Similarity=0.338 Sum_probs=95.9
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhc-----ccccccchhhccccCCCCcc
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-----SRSKKLLVSEMCSADGETCC 707 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~-----~~~~~~~V~dvm~~~~~~~~ 707 (767)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+......... ....+.+++++|.+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 75 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK------ 75 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC------
Confidence 4678899999999999999888999999999899999999999987543211000 01234568888887
Q ss_pred CCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 708 ~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++.++++++++.++++.|.+.+.+.+||+| +|+++|++|.+|+++
T Consensus 76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 DVITVHPLDTVEEAALLMREHRIGCLPVVE------DGRLVGIITETDLLR 120 (121)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEee------CCEEEEEEEHHHhhc
Confidence 788999999999999999999999999998 589999999999986
No 103
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6.5e-11 Score=109.26 Aligned_cols=114 Identities=23% Similarity=0.291 Sum_probs=95.0
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhh------cccccccchhhccccCCCCc
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK------TSRSKKLLVSEMCSADGETC 706 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~------~~~~~~~~V~dvm~~~~~~~ 706 (767)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+...... +....+.++.++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR----- 75 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC-----
Confidence 5678999999999999999999999999996 9999999999998765421100 000112357888877
Q ss_pred cCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 707 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 707 ~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++.++++++++.++++.|.+++.+.+||+|+ +++++|++|++|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvit~~dll~ 121 (122)
T cd04637 76 -DPITVSPDTPVDEASKLLLENSISCLPVVDE-----NGQLIGIITWKDLLK 121 (122)
T ss_pred -CCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-----CCCEEEEEEHHHhhh
Confidence 7899999999999999999999999999996 789999999999985
No 104
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=5.4e-11 Score=106.52 Aligned_cols=103 Identities=25% Similarity=0.366 Sum_probs=91.0
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.. .+.++.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~----------~~~~~~~~~~~------~~~~v 64 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH----------PNRLVADAMTR------EVVTI 64 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc----------ccCCHHHHccC------CCEEE
Confidence 467789999999999999988889999998 68999999999998642 12357888877 78999
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++++.|.+++.+.+||+| +|+++|+||++|++.
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~~~l~~ 104 (105)
T cd04599 65 SPEASLLEAKRLMEEKKIERLPVLR------ERKLVGIITKGTIAL 104 (105)
T ss_pred CCCCCHHHHHHHHHHcCCCEeeEEE------CCEEEEEEEHHHhcc
Confidence 9999999999999999999999999 589999999999873
No 105
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=5.2e-11 Score=107.00 Aligned_cols=105 Identities=25% Similarity=0.379 Sum_probs=92.5
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++.+++.++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.... .+..++++|.+ .+.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----------~~~~~~~~~~~------~~~~ 64 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----------PDETVEEIMSK------DLVV 64 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----------ccccHHHhCCC------CCeE
Confidence 46788999999999999998888889999987 9999999999997521 23458888877 7889
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+.+++++.++++.|.+++.+.+||+|+ +|+++|+++.+|+++
T Consensus 65 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvi~~~di~~ 106 (107)
T cd04610 65 AVPEMDIMDAARVMFRTGISKLPVVDE-----NNNLVGIITNTDVIR 106 (107)
T ss_pred ECCCCCHHHHHHHHHHhCCCeEeEECC-----CCeEEEEEEHHHhhc
Confidence 999999999999999999999999997 789999999999985
No 106
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.26 E-value=5.3e-11 Score=106.90 Aligned_cols=100 Identities=22% Similarity=0.181 Sum_probs=88.3
Q ss_pred eEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEecC
Q 004220 635 VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATP 714 (767)
Q Consensus 635 ~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~ 714 (767)
.++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+.. ..++.++|.+ .+.++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~~~~~------~~~~v~~ 65 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVDYIVR------GIPYVRL 65 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhhhhhc------CCcEEcC
Confidence 46789999999999999999999999997 9999999999998532 1236677776 6889999
Q ss_pred CCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 715 NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 715 d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++.++++.|.+++.+.+||+| +|+++|++|++|+++
T Consensus 66 ~~~l~~a~~~~~~~~~~~~~Vv~------~~~~iGvit~~dl~~ 103 (104)
T cd04594 66 TSTAEEAWEVMMKNKTRWCPVVD------DGKFKGIVTLDSILD 103 (104)
T ss_pred CCCHHHHHHHHHHcCcceEEEEE------CCEEEEEEEHHHhhc
Confidence 99999999999999999999998 689999999999975
No 107
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=6.5e-11 Score=108.97 Aligned_cols=113 Identities=26% Similarity=0.344 Sum_probs=95.1
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhh------cccccccchhhccccCCCCc
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK------TSRSKKLLVSEMCSADGETC 706 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~------~~~~~~~~V~dvm~~~~~~~ 706 (767)
++.++.+++++.++.+.|.+++.+.+||+|+ ++++|+++..|+.+........ .....+..+.++|.+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR----- 75 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC-----
Confidence 5678899999999999999989999999996 9999999999998765421110 012234568888877
Q ss_pred cCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 707 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 707 ~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++.++++++++.+++++|.+.+.+.+||+| +|+++|+++++|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 -PVITIEPDTSVSDVASLMLENNIGGLPVVD------DGKLVGIVTRTDILR 120 (121)
T ss_pred -CceEECCCCcHHHHHHHHHHcCCCcccEEE------CCEEEEEEEHHHhhc
Confidence 789999999999999999999999999999 579999999999975
No 108
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.25 E-value=4.5e-11 Score=136.90 Aligned_cols=120 Identities=29% Similarity=0.280 Sum_probs=107.1
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccc-
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCS- 700 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~- 700 (767)
+-..++++|.+++.++++++++.++.+.|.+++++.+||+|++++++|+||.+|+.... ..+.+++++|+
T Consensus 85 ~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~---------~~~~~V~dim~~ 155 (486)
T PRK05567 85 KVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET---------DLSQPVSEVMTK 155 (486)
T ss_pred HhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc---------cCCCcHHHHcCC
Confidence 33468899999999999999999999999999999999999999999999999996431 12346889997
Q ss_pred cCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 701 ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 701 ~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
+ ++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++...
T Consensus 156 ~------~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-----~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 156 E------RLVTVPEGTTLEEALELLHEHRIEKLPVVDD-----NGRLKGLITVKDIEKAEE 205 (486)
T ss_pred C------CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEhHHhhhhhh
Confidence 4 6899999999999999999999999999998 899999999999998753
No 109
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.25 E-value=9.6e-11 Score=106.96 Aligned_cols=113 Identities=30% Similarity=0.394 Sum_probs=98.0
Q ss_pred cccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCcc
Q 004220 628 EVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCC 707 (767)
Q Consensus 628 dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~ 707 (767)
+.|.+++.++.++.++.++...|.+++...+||+++ ++++|++|.+|+.+....... ...++.++|+.
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~-----~~~~v~~v~~~------ 70 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGK-----RLLPVKEVMTK------ 70 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCC-----ccccHHHhccC------
Confidence 455588999999999999999999999999999974 489999999999998753321 11158899987
Q ss_pred CCeEecCCCCHHHHHHHHHh-cCCCEeEEEeccCCCCCC-eEEEEEeHHHHH
Q 004220 708 VPCTATPNMNLLSALILMDR-YGVNQVPVVMEHIPGQRG-QLVGLLDRESII 757 (767)
Q Consensus 708 ~~~~V~~d~sL~ea~~~m~~-~~~~~lpVVd~~~~~~~g-~lvGIVt~~DIl 757 (767)
++.++.+++++.++.+.|.+ ++.+.+||+|+ ++ +++|++|++|++
T Consensus 71 ~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-----~~~~lvGivt~~di~ 117 (117)
T COG0517 71 PVVTVDPDTPLEEALELMVERHKIRRLPVVDD-----DGGKLVGIITLSDIL 117 (117)
T ss_pred CcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-----CCCeEEEEEEHHHcC
Confidence 78999999999999999999 79999999997 65 999999999973
No 110
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.24 E-value=7.7e-11 Score=106.43 Aligned_cols=100 Identities=20% Similarity=0.294 Sum_probs=88.9
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCC---CCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccC
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCV 708 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~ 708 (767)
+....+++++++.++.+.+.+.+.+.+||+|+ +++++|+|+.+|+.+.... +|.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------~m~~------~ 60 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------YIDP------S 60 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------hccC------C
Confidence 35677899999999999999988889999998 6999999999999876531 6666 6
Q ss_pred CeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 709 ~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+.++++++++.++++.|.+++.+.+||++ +|+++|+||++|+++
T Consensus 61 ~~~v~~~~~l~~~~~~~~~~~~~~~pVv~------~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 61 PFTVSPRTSLEKVHQLFRKLGLRHLLVVD------EGRLVGIITRKDLLK 104 (105)
T ss_pred CceECCCCcHHHHHHHHHHcCCCEEEEEE------CCeEEEEEEhhhhhc
Confidence 88999999999999999999999999996 689999999999976
No 111
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.23 E-value=1.1e-10 Score=105.29 Aligned_cols=108 Identities=24% Similarity=0.267 Sum_probs=90.6
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+....... ..+.++.++|.+ ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~~~------~~~~v 70 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA----KFSLPVREVMGE------PLPTV 70 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc----ccCcCHHHHhcC------CCcee
Confidence 4678899999999999999999999999997 999999999999987642211 113567888877 68899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
++++++.++.++|.+ .. .+||+|+ +|+++|+||++|+++
T Consensus 71 ~~~~~l~~~~~~~~~-~~-~~~vv~~-----~~~~~Gvvt~~di~~ 109 (110)
T cd04609 71 DPDAPIEELSELLDR-GN-VAVVVDE-----GGKFVGIITRADLLK 109 (110)
T ss_pred CCCCcHHHHHHHHHh-CC-ceeEEec-----CCeEEEEEeHHHhhc
Confidence 999999999999998 33 4789987 799999999999975
No 112
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.21 E-value=6.9e-11 Score=134.87 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=104.8
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC---CcEEEEEehhhHHHHHHHHhhhcccccccchhhccc
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCS 700 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~---g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~ 700 (767)
.+.++.|..++.++++++|+.++.+.|.+++++.+||+|++ ++++|+||.+|+.... ..+.+++++|+
T Consensus 96 k~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~---------~~~~~V~diMt 166 (495)
T PTZ00314 96 KRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK---------DKSTPVSEVMT 166 (495)
T ss_pred cccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc---------cCCCCHHHhhC
Confidence 35778899999999999999999999999999999999974 8999999999997321 13567999997
Q ss_pred cCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 701 ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 701 ~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
+ ..++.++++++++.|+.++|.+++.+.+||+|+ +++++|+||++|+++...
T Consensus 167 ~----~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-----~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 167 P----REKLVVGNTPISLEEANEVLRESRKGKLPIVND-----NGELVALVSRSDLKKNRG 218 (495)
T ss_pred C----cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-----CCcEEEEEEehHhhhccc
Confidence 4 125789999999999999999999999999997 889999999999998753
No 113
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.21 E-value=2.2e-10 Score=102.71 Aligned_cols=111 Identities=31% Similarity=0.395 Sum_probs=94.3
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
++.+++.++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+....... .....+.++|.. ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~~~~~~~~------~~~~~ 71 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGL----DPLVTVGDVMTR------DVVTV 71 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccC----CccccHHHHhcC------Cceec
Confidence 46778899999999999999889999999988999999999999987642211 111225677776 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
.+++++.++++.|.+.+.+.+||+|+ +++++|+++++|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~~dl~~ 112 (113)
T cd02205 72 SPDTSLEEAAELMLEHGIRRLPVVDD-----EGRLVGIVTRSDILR 112 (113)
T ss_pred CCCcCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEHHHhhc
Confidence 99999999999999999999999997 799999999999975
No 114
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=1.6e-10 Score=106.04 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=92.6
Q ss_pred CceEEeCCCCHHHHHHHHHHcC-CcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~-~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+++++++++++.++.+.|.+.+ ++.+||+|+ ++++|+++.+|+.+....... .....+..+.++|++ ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~-~~~~~~~~v~~~~~~------~~~~ 73 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYG-RALYGKKPVSEVMDP------DPLI 73 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhh-HHHHcCCcHHHhcCC------CcEE
Confidence 4667899999999999998876 889999998 999999999999876542110 011234568899987 7899
Q ss_pred ecCCCCHHHHHHHHHhcCCC---EeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 712 ATPNMNLLSALILMDRYGVN---QVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~---~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
+.+++++.++++.|.+++.+ ..+|+++ +|+++|+||++|+++
T Consensus 74 v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvvs~~di~~ 118 (119)
T cd04598 74 VEADTPLEEVSRLATGRDSQNLYDGFIVTE-----EGRYLGIGTVKDLLR 118 (119)
T ss_pred ecCCCCHHHHHHHHHcCCcccccccEEEee-----CCeEEEEEEHHHHhc
Confidence 99999999999999988864 4468887 899999999999975
No 115
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.19 E-value=4.1e-11 Score=133.55 Aligned_cols=119 Identities=21% Similarity=0.282 Sum_probs=108.7
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHc-----CCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhc
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAE-----KQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEM 698 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~-----~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dv 698 (767)
-+++.+|+.++++++++.|+.++++.+++. ....++|+|++++++|+++.+++...- ++..++++
T Consensus 132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~----------~~~~i~~i 201 (451)
T COG2239 132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE----------PDELLKDL 201 (451)
T ss_pred hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC----------cHhHHHHH
Confidence 378999999999999999999999999854 357899999999999999999998432 46679999
Q ss_pred cccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 699 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 699 m~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
|.+ ++.++.++++.+++.+.|++++.-.+||||+ +++++|+||.+|+++.++++
T Consensus 202 m~~------~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-----~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 202 MED------DVVSVLADDDQEEVARLFEKYDLLAVPVVDE-----DNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred hcc------cceeecccCCHHHHHHHHHHhCCeecceECC-----CCceeeeeeHHHHHHHHHHH
Confidence 998 7899999999999999999999999999998 89999999999999999876
No 116
>PRK11573 hypothetical protein; Provisional
Probab=99.17 E-value=2.5e-10 Score=127.85 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=107.1
Q ss_pred hhccCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC-CcEEEEEehhhHHHHHHHHhhhcccccccchh
Q 004220 620 LKRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVS 696 (767)
Q Consensus 620 ~l~~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~ 696 (767)
.+++.+|+|+|++ ++..++.++++.++++.+.+++++++||++++ ++++|+++.+|+.....+.. ......+.
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~----~~~~~~l~ 258 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK----EFTKENML 258 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC----cCCHHHHH
Confidence 3567899999998 88999999999999999999999999999764 88999999999987543211 11112234
Q ss_pred hccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 697 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 697 dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
++++ ++.+|++++++.++++.|++++.+...|+|| .|...|+||.+|+++.+-.+
T Consensus 259 ~~~r-------~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-----yG~~~GiVTleDilEeivGe 313 (413)
T PRK11573 259 RAAD-------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-----YGDIQGLVTVEDILEEIVGD 313 (413)
T ss_pred hhcc-------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-----CCCeEEEeeHHHHHHHHhCC
Confidence 5554 4889999999999999999999999999998 89999999999999987644
No 117
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=3e-10 Score=108.56 Aligned_cols=113 Identities=26% Similarity=0.360 Sum_probs=94.4
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhc-------------------------
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT------------------------- 687 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~------------------------- 687 (767)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5678999999999999999999999999997 99999999999988764221000
Q ss_pred ---ccccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 688 ---SRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 688 ---~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
....+.++.++|.+ ++.++++++++.++++.|.+.+.+.+||++ +++++|++|++|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~------~~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTK------KVITISPDASIEDAAELMVRHKIKRLPVVE------DGRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCC------CCeEECCCCcHHHHHHHHHHcCCCEEEEEE------CCEEEEEEEHHHhhc
Confidence 00124457778877 789999999999999999999999999999 579999999999974
No 118
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.17 E-value=1.6e-10 Score=135.05 Aligned_cols=129 Identities=24% Similarity=0.235 Sum_probs=107.1
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhh-----------------
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK----------------- 686 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~----------------- 686 (767)
.+|+|+|++++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|+.+........
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L 147 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTL 147 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999999865431100
Q ss_pred -----------c----------------------------c-----------------------c---------------
Q 004220 687 -----------T----------------------------S-----------------------R--------------- 689 (767)
Q Consensus 687 -----------~----------------------------~-----------------------~--------------- 689 (767)
. . .
T Consensus 148 ~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ 227 (546)
T PRK14869 148 DGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVT 227 (546)
T ss_pred CcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCe
Confidence 0 0 0
Q ss_pred ---------------ccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHH
Q 004220 690 ---------------SKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRE 754 (767)
Q Consensus 690 ---------------~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~ 754 (767)
..+.+++++|++ +++.++++++++.++.+.|.+++.+.+||+|+ +|+++|+||++
T Consensus 228 ii~t~~dt~~t~~~l~~~~~V~~iM~~-----~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-----~g~lvGiit~~ 297 (546)
T PRK14869 228 VISTPYDTFTTARLINQSIPVSYIMTT-----EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-----DGKVVGVISRY 297 (546)
T ss_pred EEEecccHHHHHHHhhcCCCHHHhccC-----CCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-----CCCEEEEEEHH
Confidence 001234455550 37899999999999999999999999999997 89999999999
Q ss_pred HHHHHhhh
Q 004220 755 SIILACRF 762 (767)
Q Consensus 755 DIl~~~~~ 762 (767)
|+++..++
T Consensus 298 dl~~~~~~ 305 (546)
T PRK14869 298 HLLSPVRK 305 (546)
T ss_pred HhhccccC
Confidence 99987654
No 119
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=4.2e-10 Score=101.16 Aligned_cols=104 Identities=25% Similarity=0.326 Sum_probs=90.2
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEe
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 712 (767)
+..++.+++++.++.+.|.+.+.+.+||+|++++++|+++.+++.+.. .+..+.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~----------~~~~~~~~~~~------~~~~v 65 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP----------EEEQLALLMTR------DPPTV 65 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc----------ccchHHHHhcC------CCceE
Confidence 456788999999999999988889999999889999999999997521 12346777776 78899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 713 ~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
.+++++.++++.|.+++.+.+||+| +|+++|++|.+|+++
T Consensus 66 ~~~~~l~~~~~~~~~~~~~~~~Vvd------~~~~~G~it~~d~~~ 105 (106)
T cd04638 66 SPDDDVKEAAKLMVENNIRRVPVVD------DGKLVGIVTVADIVR 105 (106)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEE------CCEEEEEEEHHHhhc
Confidence 9999999999999999999999999 469999999999875
No 120
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.13 E-value=3.7e-10 Score=106.83 Aligned_cols=108 Identities=43% Similarity=0.635 Sum_probs=82.2
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccc-------cccchhhccccCC--
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRS-------KKLLVSEMCSADG-- 703 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~-------~~~~V~dvm~~~~-- 703 (767)
++.++.+++++.++++.|.+++.+.+||+|++++++|++|.+|+.+............ +...+.++|.+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 5788999999999999999999999999999999999999999998775322111000 1122344543100
Q ss_pred -CCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccC
Q 004220 704 -ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHI 740 (767)
Q Consensus 704 -~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~ 740 (767)
.+.+++.++++++++.+|++.|.+++.+.+||+|++.
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 0112688999999999999999999999999999743
No 121
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.03 E-value=1.8e-09 Score=122.03 Aligned_cols=126 Identities=21% Similarity=0.177 Sum_probs=106.5
Q ss_pred hhccCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeC-CCCcEEEEEehhhHHHHHHHHhhhcccccccchh
Q 004220 620 LKRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVD-NDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVS 696 (767)
Q Consensus 620 ~l~~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd-~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~ 696 (767)
.+.+.+|+++|++ ++..++.+++++++.+.+.+++++++||+| +.++++|+++.+|++....+... .....
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~------~~~~~ 275 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS------DLDLR 275 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc------ccchh
Confidence 3667899999998 788899999999999999999999999999 56889999999999988753221 11111
Q ss_pred hccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 697 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 697 dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
..+. ++..|++.+++.++++.|++.+.+...|+|| .|...|+||.+|+++.+-.+
T Consensus 276 ~~~~-------~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-----yG~~~GlVTleDIiEeIvGe 330 (429)
T COG1253 276 VLVR-------PPLFVPETLSLSDLLEEFREERTHMAIVVDE-----YGGVEGLVTLEDIIEEIVGE 330 (429)
T ss_pred hccc-------CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-----CCCeEEEeEHHHHHHHHhCC
Confidence 1111 4889999999999999999999999999998 89999999999999988654
No 122
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3.6e-09 Score=111.75 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=107.1
Q ss_pred hccCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC-CcEEEEEehhhHHHHHHHHhhhcccccccchhh
Q 004220 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (767)
Q Consensus 621 l~~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (767)
+++++|+|+|.+ ++..++.|++.+++++.+.+..|.++|+..++ ++.+|+++.+|+.+++.+... ..-.+
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------~~k~d 269 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------FTKED 269 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------ccHhH
Confidence 678899999988 78889999999999999999999999999654 679999999999999863221 12223
Q ss_pred ccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 698 vm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
+++. +.+|.+|++.+++.+-+..|.+++-+.-.|||| .|.+.|+||.+||++.+-.+
T Consensus 270 ~~~~----a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-----YG~i~GLVTLEDIlEEIVGd 326 (423)
T COG4536 270 ILRA----ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-----YGDIQGLVTLEDILEEIVGD 326 (423)
T ss_pred HHHH----hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-----cCcEEeeeeHHHHHHHHhcc
Confidence 3321 235899999999999999999999999999998 99999999999999987543
No 123
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.73 E-value=3.6e-08 Score=78.44 Aligned_cols=56 Identities=29% Similarity=0.333 Sum_probs=53.3
Q ss_pred cccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 626 V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
|+++|++++.++++++++.++.+.|.+++.+.+||+|++++++|++|.+|+.+++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 57899999999999999999999999999999999999999999999999998763
No 124
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.72 E-value=5.9e-08 Score=107.25 Aligned_cols=123 Identities=22% Similarity=0.202 Sum_probs=100.9
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccc-hhhccccCCCCccCCeE
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLL-VSEMCSADGETCCVPCT 711 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~-V~dvm~~~~~~~~~~~~ 711 (767)
++..+..++++.+|++.|.+.+++.+||+|++|+.+|.++..|+........... .+.. +++.-...+.-...+++
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~vvt 314 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNN---LDLSCLSEALSHRPIRFEGVVT 314 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCc---cchhHHHHHhhhcccccCccEE
Confidence 6888999999999999999999999999999999999999999998776433221 1222 33333222222235789
Q ss_pred ecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
+.++++|.++++.|.+++++++.|||+ +|+++|+||..|++..+..+
T Consensus 315 c~~~ssL~~vi~~lv~~~vHRl~VVd~-----~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 315 CRPTSTLAEVIDKLVAHRVHRLWVVDE-----DGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred EeecchHHHHHHHHHhcCceEEEEEcC-----CCcEEEEeeHHHHHHHHHhC
Confidence 999999999999999999999999997 89999999999999988655
No 125
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=1.4e-07 Score=105.28 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=98.4
Q ss_pred ccCccccccccCc---eEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhc
Q 004220 622 RRVFVSEVMRTRY---VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEM 698 (767)
Q Consensus 622 ~~~~V~dvM~~~~---~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dv 698 (767)
+..++.++|.+.. +...++.+..++++.|.+.+.+.++|+|+++++.|+++.+++.+.... ...+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~ 342 (400)
T PRK10070 272 QVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ---------QQGLDAA 342 (400)
T ss_pred cccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc---------CCchhhh
Confidence 3456777775532 223466789999999999999999999999999999999999765431 1235566
Q ss_pred cccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 699 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 699 m~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
+.+ ...++++++++.+++..+.+.... +||||+ +|+++|+|++.++++++...
T Consensus 343 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 343 LID------APLAVDAQTPLSELLSHVGQAPCA-VPVVDE-----DQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred hcc------CCceeCCCCCHHHHHHHHHhCCCc-EEEECC-----CCcEEEEEEHHHHHHHHHhc
Confidence 655 678999999999999999997776 999997 89999999999999998654
No 126
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.66 E-value=6.8e-08 Score=76.83 Aligned_cols=56 Identities=34% Similarity=0.619 Sum_probs=52.1
Q ss_pred hhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 695 VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 695 V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
++++|++ ++.++++++++.++.+.|.+++.+.+||+|+ +++++|+||++|+++.+.
T Consensus 1 v~~~m~~------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP------PPITVSPDDSLEEALEIMRKNGISRLPVVDE-----DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS------SSEEEETTSBHHHHHHHHHHHTSSEEEEEST-----TSBEEEEEEHHHHHHHHH
T ss_pred CeECCcC------CCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCEEEEEEEHHHHHhhhh
Confidence 4678888 8999999999999999999999999999997 899999999999998764
No 127
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.60 E-value=6.5e-08 Score=107.82 Aligned_cols=190 Identities=15% Similarity=0.216 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhc-CCchhHHHH---HH----HHHH-HH-HHHHhcccccC
Q 004220 349 ELPLYLLLGVLCGLISLTLSRCTTYMLAIV-----DNLQKDN-GIPKAVFPV---MG----GLAV-GL-IALMFPEILYW 413 (767)
Q Consensus 349 ~l~~~illGii~Gl~g~~f~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~---lg----gl~v-g~-i~~~~P~~~g~ 413 (767)
.|..+.++|++.||+|.+.....+.+..+- ..+.+.. ..--++... +| -..+ ++ ++++-|-..|+
T Consensus 87 kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGS 166 (762)
T KOG0474|consen 87 KWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGS 166 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCC
Confidence 456789999999999998776554443211 0001110 000011111 11 1111 12 23556999999
Q ss_pred CHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHH-------HhhhcCC
Q 004220 414 GFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFIN-------FAIAQSN 486 (767)
Q Consensus 414 G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~-------~~~~~~~ 486 (767)
|.++++.-+|+-. .+..+.+...+.|++-...+++.|.-.|-++|++..||++|+.++|.=. .++.
T Consensus 167 GIPevK~YLNGV~----iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr--- 239 (762)
T KOG0474|consen 167 GIPEVKCYLNGVK----IPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFR--- 239 (762)
T ss_pred CCchhhhhhcCcc----CcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhh---
Confidence 9999999988752 3444556778999999999999999999999999999999999887521 1111
Q ss_pred CccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHHh
Q 004220 487 PTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDY---RIVLPLLGAVGLSSWFTS 550 (767)
Q Consensus 487 ~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~~---~~~lP~~~a~~va~~v~~ 550 (767)
+| -+.-+..-++.||+||..++++|||+.+++|.+|-.-+. .++=-+.++++++.++.+
T Consensus 240 -~F----rnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 240 -YF----RNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred -hh----cccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 11 134578889999999999999999999999999954322 233334445544444443
No 128
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.60 E-value=4.6e-07 Score=99.90 Aligned_cols=113 Identities=26% Similarity=0.264 Sum_probs=94.6
Q ss_pred cccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCC
Q 004220 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVP 709 (767)
Q Consensus 630 M~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~ 709 (767)
|........++.+..++++.|...+.+...|+|+++++.|.++.+++...... ...+.+.|.+ ..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~------~~ 312 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK---------AQGLQDVLID------DI 312 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhc---------CCchhhhhcc------CC
Confidence 33344456677889999999999999999999999999999999998866531 1235666665 67
Q ss_pred eEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 710 CTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 710 ~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
.++++++++.+++..|.+++.. +||+|+ +|+++|+||+.++++++...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 313 YTVDAGTLLRETVRKVLKAGIK-VPVVDE-----DQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred ceECCCCcHHHHHHHHHhCCCC-EEEECC-----CCcEEEEEEHHHHHHHHHhh
Confidence 8999999999999999999998 999998 89999999999999988643
No 129
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.57 E-value=1.6e-07 Score=93.38 Aligned_cols=125 Identities=16% Similarity=0.171 Sum_probs=107.7
Q ss_pred hccCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCC-CCcEEEEEehhhHHHHHHHHhhhcccccccchhh
Q 004220 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDN-DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (767)
Q Consensus 621 l~~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~-~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (767)
...++|+|+|.+ +..+++.+.++.+.+..+.+..++++||+.+ .+.+.|++..+||++.+... .....+++
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~------~~~F~i~~ 137 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD------AEPFDIKE 137 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC------cccccHHH
Confidence 456799999988 7888999999999999999999999999965 46799999999999987421 12344666
Q ss_pred ccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 698 vm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
+..+ ...|+++-.+...++-|+..+.+...|+|+ -|-+-|.||.+|+++.+-.+
T Consensus 138 lLRP-------av~VPESKrvd~lLkeFR~~RnHMAIViDE-----fGgVsGLVTIEDiLEqIVGd 191 (293)
T COG4535 138 LLRP-------AVVVPESKRVDRLLKEFRSQRNHMAIVIDE-----FGGVSGLVTIEDILEQIVGD 191 (293)
T ss_pred hccc-------ceecccchhHHHHHHHHHhhcCceEEEEec-----cCCeeeeEEHHHHHHHHhcc
Confidence 6655 789999999999999999999999999998 89999999999999987644
No 130
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.55 E-value=1.1e-07 Score=101.36 Aligned_cols=110 Identities=23% Similarity=0.336 Sum_probs=98.1
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCC---CCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccC
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCV 708 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~ 708 (767)
.++.+++|+.++.++++.-.++++..+||.++ ..|++|+||.+|+... . .+...++|+|++ +
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~--------~~~~~~~~vmt~------~ 180 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-E--------DNSLLVSDVMTK------N 180 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-h--------cccchhhhhccc------c
Confidence 47889999999999999999999999999975 4789999999999765 1 145779999998 6
Q ss_pred CeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 709 ~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
+.+.+.+.+++++-+++++++-..+||||+ +|+++-+++++|+.+...
T Consensus 181 ~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-----~gelva~~~rtDl~k~~~ 228 (503)
T KOG2550|consen 181 PVTGAQGITLKEANEILKKIKKGKLPVVDD-----KGELVAMLSRTDLMKNRD 228 (503)
T ss_pred cccccccccHHHHHHHHHhhhcCCcceecc-----CCceeeeeehhhhhhhcC
Confidence 788999999999999999999999999998 899999999999988753
No 131
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.27 E-value=5e-07 Score=102.86 Aligned_cols=114 Identities=15% Similarity=0.224 Sum_probs=94.1
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccC
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSAD 702 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~ 702 (767)
+.+++++|++++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+.+.+.... .+|+|+.
T Consensus 194 ~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~----------~ed~~~~- 262 (449)
T TIGR00400 194 EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA----------TEDFYMI- 262 (449)
T ss_pred CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh----------HHHHHHh-
Confidence 45799999999999999999999999999999999999999999999999999999885322 3566665
Q ss_pred CCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhh
Q 004220 703 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 762 (767)
Q Consensus 703 ~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~ 762 (767)
...+..+++++.++...|.+++...++|.- +.|+++ ..+++.+++
T Consensus 263 -----~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~---------~~~~~t-~~ii~~f~~ 307 (449)
T TIGR00400 263 -----AAVKPLDDSYFDTSILVMAKNRIIWLLVLL---------VSSTFT-ATIISNYED 307 (449)
T ss_pred -----cCCCCCcchhhhchHHHHHHhccchHHHHH---------HHHHHH-HHHHHHHHH
Confidence 344445678889999999999999998863 677777 677666543
No 132
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.20 E-value=1.8e-06 Score=88.60 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=67.3
Q ss_pred EehhhHHHHHHHHh--hhcccccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEE
Q 004220 671 LTLGDIEEFSKYAQ--AKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLV 748 (767)
Q Consensus 671 Vt~~dL~~~l~~~~--~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lv 748 (767)
|+++|+.+.+.+-+ .-.....++...|+|++ +++++++|+++++|.++|.+++++.+||+|| +.+++
T Consensus 221 IdrddLe~llr~~elqa~~R~~~~LtcadIMSr------dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-----~~rl~ 289 (382)
T COG3448 221 IDRDDLERLLRETELQALRRRMGELTCADIMSR------DVVTVSTDTSIDHARKLLQEHRIKALPVLDE-----HRRLV 289 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc------cceecCCcCChHHHHHHHHHcCccccccccc-----cccee
Confidence 68888887775422 11234567789999999 8999999999999999999999999999998 88999
Q ss_pred EEEeHHHHHHHhh
Q 004220 749 GLLDRESIILACR 761 (767)
Q Consensus 749 GIVt~~DIl~~~~ 761 (767)
|+||++|+.+..+
T Consensus 290 GiVt~~dl~~~a~ 302 (382)
T COG3448 290 GIVTQRDLLKHAR 302 (382)
T ss_pred eeeeHHHHhhccC
Confidence 9999999998543
No 133
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.16 E-value=7.1e-06 Score=93.61 Aligned_cols=173 Identities=19% Similarity=0.245 Sum_probs=120.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ch-hHHHHHHHHHHHHH-------HHHhcccccCCHHHH
Q 004220 348 GELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI-PK-AVFPVMGGLAVGLI-------ALMFPEILYWGFENV 418 (767)
Q Consensus 348 ~~l~~~illGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~-~~-~~~~~lggl~vg~i-------~~~~P~~~g~G~~~i 418 (767)
.||.+..+||++.+++++..=..+...++....+.+...- .. ..+..-.+..++++ -++-|+..|+|.+.+
T Consensus 94 eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEm 173 (931)
T KOG0476|consen 94 EDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEM 173 (931)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHheeccccccCCChhH
Confidence 4567889999999999998887777776665444433211 11 11112222233322 245699999999999
Q ss_pred HHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhcCCCccccccccccc
Q 004220 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (767)
Q Consensus 419 ~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (767)
+-++.+-.+ .-..-+..++.|++...+++|+|.|-|-.+|-+.|++.+.+.++++...-+.+. +. +..-
T Consensus 174 KtIlrGv~L----keYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~---~e----nesR 242 (931)
T KOG0476|consen 174 KTILRGVIL----KEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGF---FE----NESR 242 (931)
T ss_pred HHHHHhhhH----HhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhcccc---cc----Ccch
Confidence 988876422 222335678999999999999999999999999999999999999875333321 10 1111
Q ss_pred hhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCC
Q 004220 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQD 531 (767)
Q Consensus 499 ~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg~ 531 (767)
-.-...+|.|-+.|.++.||++++++-+|.|-.
T Consensus 243 ~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~ 275 (931)
T KOG0476|consen 243 NMEMLAAACAVGVACTFSAPIGGVLFSIEVTST 275 (931)
T ss_pred HHHHHHHHhhhhheeeecCccceeEEEEEEeee
Confidence 233445666777888889999999999999853
No 134
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.07 E-value=5.8e-06 Score=83.70 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=56.8
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
.+.+|+|+|+++++++++|+.+.||+++|..++...+.|+|++|+++|+||+.|+++.+.
T Consensus 232 ~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 232 LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 457999999999999999999999999999999999999999999999999999998763
No 135
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.04 E-value=1.6e-06 Score=101.42 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=98.6
Q ss_pred hhhhccCccccccc-cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHH----------hh-
Q 004220 618 EELKRRVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA----------QA- 685 (767)
Q Consensus 618 ~~~l~~~~V~dvM~-~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~----------~~- 685 (767)
.......+|+++|+ +++.++++++++.++.+.|.+++.+.+||+|++|+++|+||.+|+.+...+. +.
T Consensus 240 ~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~ 319 (546)
T PRK14869 240 RLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAV 319 (546)
T ss_pred HHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccc
Confidence 44566789999999 8999999999999999999999999999999999999999999999865320 00
Q ss_pred ---hcc----cccccchhhccccCCCCccCCeEe---cCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHH
Q 004220 686 ---KTS----RSKKLLVSEMCSADGETCCVPCTA---TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRES 755 (767)
Q Consensus 686 ---~~~----~~~~~~V~dvm~~~~~~~~~~~~V---~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~D 755 (767)
... -..+.++.++|+. ++..+ +...+...+.++|.+.++...|++. ...+.||++-++
T Consensus 320 ~~~~~~~i~~iiDHH~~~~~~~~------~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia------~~ll~gIlsDT~ 387 (546)
T PRK14869 320 EGIEEAEILEIIDHHRLGDIQTS------NPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA------GLLLAAILSDTL 387 (546)
T ss_pred cchhhceEEEEecCCccCCCCCC------CCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH------HHHHHHHHHHhc
Confidence 000 0112234445544 34333 3356678899999999999888887 457899999888
Q ss_pred HHHH
Q 004220 756 IILA 759 (767)
Q Consensus 756 Il~~ 759 (767)
.++.
T Consensus 388 ~f~~ 391 (546)
T PRK14869 388 LFKS 391 (546)
T ss_pred CccC
Confidence 7764
No 136
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.98 E-value=1e-05 Score=73.34 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=51.8
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.+++++|..++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 4688999999999999999999999999999999999998899999999999875
No 137
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.97 E-value=1e-05 Score=74.00 Aligned_cols=60 Identities=32% Similarity=0.324 Sum_probs=54.2
Q ss_pred hhhcc--CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 619 ELKRR--VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 619 ~~l~~--~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..+++ .+++|+|.+++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 51 ~ll~~v~~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 51 ILLADVHPRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhhcchhhhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 33444 6799999999999999999999999999999999999999999999999999864
No 138
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.89 E-value=3.3e-05 Score=88.90 Aligned_cols=119 Identities=33% Similarity=0.342 Sum_probs=85.4
Q ss_pred cCccccccc-cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhcccc
Q 004220 623 RVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSA 701 (767)
Q Consensus 623 ~~~V~dvM~-~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~ 701 (767)
..+++++|+ ++++++++++++.++++.|.+++.+.+||+|++++++|+||.+|+.+.............++.+...|..
T Consensus 146 ~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~ 225 (486)
T PRK05567 146 SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGV 225 (486)
T ss_pred CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeeccc
Confidence 357899998 6899999999999999999999999999999999999999999999876421110111123344444433
Q ss_pred CCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004220 702 DGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (767)
Q Consensus 702 ~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~ 759 (767)
++ ++ .+..+.|.+.+.+.+ |+|.. +++..++++.-+.++.
T Consensus 226 -----------~~-~~-~e~a~~L~~agvdvi-vvD~a----~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 226 -----------GA-DN-EERAEALVEAGVDVL-VVDTA----HGHSEGVLDRVREIKA 265 (486)
T ss_pred -----------Cc-ch-HHHHHHHHHhCCCEE-EEECC----CCcchhHHHHHHHHHh
Confidence 23 22 677777888899854 77741 5777777665554443
No 139
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.81 E-value=4.7e-05 Score=71.75 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=60.1
Q ss_pred ehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEE
Q 004220 672 TLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751 (767)
Q Consensus 672 t~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIV 751 (767)
+.+.+++++..... .....+.+|+. +++.+++|+++.++.++|+++++..+||++ +++++|-|
T Consensus 49 t~k~Il~aL~e~e~-----~~ita~~iM~s------pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~------~~k~VGsI 111 (187)
T COG3620 49 TVKRILEALEEAEK-----TRITAKTIMHS------PVVSVSPDDSISDVVNLMRDKGISQLPVIE------EDKVVGSI 111 (187)
T ss_pred HHHHHHHHHHHhhc-----ceEeHhhhccC------CeeEECchhhHHHHHHHHHHcCCccCceee------CCeeeeee
Confidence 34445555543221 34567888888 899999999999999999999999999999 58999999
Q ss_pred eHHHHHHHhhh
Q 004220 752 DRESIILACRF 762 (767)
Q Consensus 752 t~~DIl~~~~~ 762 (767)
|.+||.+..-+
T Consensus 112 tE~~iv~~~le 122 (187)
T COG3620 112 TENDIVRALLE 122 (187)
T ss_pred cHHHHHHHHhc
Confidence 99999988743
No 140
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.80 E-value=3.6e-05 Score=70.03 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=52.9
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...+++++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 57 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 346789999999999999999999999999999999999998899999999999864
No 141
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.78 E-value=0.00011 Score=81.44 Aligned_cols=125 Identities=19% Similarity=0.254 Sum_probs=98.1
Q ss_pred CceEEeCCCCHHHHHHHHHHcCCcEEEEeC-CCCcEEEEEehhhHHHHHHHHhhhcc--cccccchhhccccCCCCccCC
Q 004220 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVD-NDNILIGLLTLGDIEEFSKYAQAKTS--RSKKLLVSEMCSADGETCCVP 709 (767)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~lpVvd-~~g~lvGiVt~~dL~~~l~~~~~~~~--~~~~~~V~dvm~~~~~~~~~~ 709 (767)
.+..+.++.++-++...+.+++++.+||.| +.+++..++|.+.+++.+........ ......+.|.-. ....+.
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~i---g~~~~i 239 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGI---GTWSNI 239 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCc---chhhhh
Confidence 348899999999999999999999999999 56899999999999998864332111 111222222111 122358
Q ss_pred eEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhcCC
Q 004220 710 CTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFCDF 765 (767)
Q Consensus 710 ~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~d~ 765 (767)
..+.+++++.+|+++|.+.++..+||||+ +|+.+|++++.|+....++.++
T Consensus 240 ~~i~~~~~v~~al~~m~~~~is~lpvV~~-----~g~~v~~~s~~Dv~~l~~~~~~ 290 (381)
T KOG1764|consen 240 ASISEDTPVIEALKIMSERRISALPVVDE-----NGKKVGNYSRFDVIHLAREGTY 290 (381)
T ss_pred eeecCCCcHHHHHHHHHhcCcCcceEEcC-----CCceecceehhhhhhhhhcCcc
Confidence 89999999999999999999999999998 7888999999999988876633
No 142
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.73 E-value=6.3e-05 Score=68.81 Aligned_cols=55 Identities=29% Similarity=0.386 Sum_probs=50.4
Q ss_pred cchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004220 693 LLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (767)
Q Consensus 693 ~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~ 758 (767)
..++++|.+ ++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+|+.+|+.+
T Consensus 58 ~~v~dim~~------~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR------KPVTARPNDPLREALNLMHEHNIRTLPVVDD-----DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC------CCCEECCcCcHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHhhc
Confidence 568899987 7889999999999999999999999999997 789999999999864
No 143
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.72 E-value=0.00018 Score=82.12 Aligned_cols=58 Identities=28% Similarity=0.265 Sum_probs=55.0
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
.+++++|+++++++++++++.+|++.|.+++.+.+||+|++++++|+||.+||.+...
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999999999998764
No 144
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.72 E-value=0.00015 Score=82.79 Aligned_cols=118 Identities=26% Similarity=0.215 Sum_probs=81.7
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCC
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADG 703 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~ 703 (767)
.+++|+|++++.++++++++.++++.|.+++.+.+||+|++++++|+||.+||.+......... ......+..
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~-~~g~l~V~a------ 220 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVD-AAGRLRVAA------ 220 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhh-hhhccchHh------
Confidence 5699999999999999999999999999999999999999999999999999998764221100 001112221
Q ss_pred CCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 704 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 704 ~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
. +.......+..+.|.+.+.+. .++|.. +|+ =.+..|.++.+++.
T Consensus 221 -----a--v~~~~~~~~~a~~Lv~aGvd~-i~~D~a----~~~---~~~~~~~i~~ik~~ 265 (479)
T PRK07807 221 -----A--VGINGDVAAKARALLEAGVDV-LVVDTA----HGH---QEKMLEALRAVRAL 265 (479)
T ss_pred -----h--hccChhHHHHHHHHHHhCCCE-EEEecc----CCc---cHHHHHHHHHHHHH
Confidence 1 222234667777778888877 466642 444 33444455555443
No 145
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.68 E-value=3.4e-05 Score=86.90 Aligned_cols=111 Identities=23% Similarity=0.172 Sum_probs=88.8
Q ss_pred HHhcccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHHHHHHHHHHHhhhc
Q 004220 405 LMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQ 484 (767)
Q Consensus 405 ~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~l~t~~t~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~ 484 (767)
.+.|..-|+|.++++-.+++-.. ....-.+..+.|-++..+++++|.+-|.++|++.++.+.|..+.++++....+
T Consensus 150 ~~AP~A~gSGIpEIK~ilSGf~~----~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~ 225 (696)
T KOG0475|consen 150 VVAPYACGSGIPEIKTILSGFII----RGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLN 225 (696)
T ss_pred heehhhhcCCCccceeeeccchh----hhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccc
Confidence 34699999999998877766422 22233456889999999999999999999999999999999999998853221
Q ss_pred CCCccccccccccchhHHHHHHHHHHHHHhcCchHHHHHHHHHHhC
Q 004220 485 SNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ 530 (767)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~alvG~aA~la~~~~aPlt~~vi~~Eltg 530 (767)
.+-..-+....|||+.|.+++||+++++|.+|-.-
T Consensus 226 -----------e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~ 260 (696)
T KOG0475|consen 226 -----------EAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVS 260 (696)
T ss_pred -----------hhHHHHHHHHHhhccchhhcCCccceeeeehhhhh
Confidence 23345566778999999999999999999999653
No 146
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.62 E-value=0.00011 Score=66.42 Aligned_cols=55 Identities=31% Similarity=0.308 Sum_probs=51.4
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~ 677 (767)
..++.++|.+.+.++++++++.++++.|.+++.+.+||+|++++++|+||.+|+.
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 57 DDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred CCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 3568899999999999999999999999999999999999889999999999986
No 147
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.61 E-value=9e-05 Score=68.12 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=53.0
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...++.++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 455789999999999999999999999999999999999998999999999999874
No 148
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.60 E-value=0.00012 Score=66.33 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=51.2
Q ss_pred cCccccccccCceEEeCC--CCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMT--TLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~--~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..++.++|.+++.++.++ +++.++++.|.+++.+.+||+|++|+++|+||.+|+.+
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 467889999899999887 68999999999999999999999899999999999875
No 149
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.58 E-value=0.00015 Score=65.52 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=53.0
Q ss_pred hccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 621 l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
....++.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+.+
T Consensus 55 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 4556889999999999999999999999999999999999998899999999999864
No 150
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.57 E-value=0.00015 Score=66.75 Aligned_cols=54 Identities=28% Similarity=0.315 Sum_probs=49.0
Q ss_pred ccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 625 ~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.+.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||.+|++.
T Consensus 69 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 69 RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 334578889999999999999999999999999999998899999999999863
No 151
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.54 E-value=0.00016 Score=64.92 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=52.2
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..+++++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 45789999999999999999999999999999999999999999999999999874
No 152
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.54 E-value=0.00012 Score=67.03 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=51.1
Q ss_pred ccCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC---CcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~---g~lvGiVt~~dL~~ 678 (767)
...+++++|++ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 35678889985 78899999999999999999999999999987 69999999999864
No 153
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.53 E-value=0.00014 Score=65.94 Aligned_cols=56 Identities=32% Similarity=0.324 Sum_probs=51.5
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...++.++|.+++.++++++++.++++.|.+++...+||+|+ ++++|+|+.+|+.+
T Consensus 58 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 346788999999999999999999999999999999999987 99999999999874
No 154
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.52 E-value=0.00018 Score=65.52 Aligned_cols=57 Identities=32% Similarity=0.395 Sum_probs=52.9
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
+..++.++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 456789999999999999999999999999999999999998899999999999875
No 155
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.50 E-value=0.00019 Score=64.57 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=52.6
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~ 679 (767)
+.+++++|++++..+.+++++.++++.|.+++...+||+|++++++|+||..|+.+.
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 457889999999999999999999999999999999999988999999999999864
No 156
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.50 E-value=0.00021 Score=63.70 Aligned_cols=56 Identities=25% Similarity=0.333 Sum_probs=51.7
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..+++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+
T Consensus 51 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 34688999999999999999999999999999999999999999999999999874
No 157
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.49 E-value=0.00022 Score=64.23 Aligned_cols=55 Identities=29% Similarity=0.358 Sum_probs=51.5
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.++.++|.++..++++++++.++++.|.+++...+||+|++++++|+|+.+|+.+
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 4799999999999999999999999999999999999998899999999999874
No 158
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.49 E-value=0.00028 Score=81.01 Aligned_cols=59 Identities=25% Similarity=0.225 Sum_probs=54.5
Q ss_pred ccCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHH
Q 004220 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (767)
Q Consensus 622 ~~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l 680 (767)
.+.+|+++|++ +++++++++++.+|++.|.+++.+.+||+|++++++|+||.+|+.+..
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 45689999997 888999999999999999999999999999999999999999999754
No 159
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.00019 Score=64.59 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=50.7
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..+++++|++++.++++++++.++++.|.+++...+||+| +++++|++|.+|+.+
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 4579999999999999999999999999999999999998 589999999999875
No 160
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.45 E-value=0.00021 Score=65.40 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=52.8
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...++.++|.+++..+.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 456788999999999999999999999999999999999998899999999999875
No 161
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.45 E-value=0.00017 Score=64.98 Aligned_cols=55 Identities=29% Similarity=0.395 Sum_probs=51.4
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|+..
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 5789999999999999999999999999999999999998899999999999864
No 162
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.43 E-value=0.0003 Score=63.09 Aligned_cols=57 Identities=33% Similarity=0.394 Sum_probs=52.4
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...+++++|.+++..+++++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+.+
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 456789999999999999999999999999999999999998899999999999874
No 163
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.43 E-value=0.00028 Score=62.98 Aligned_cols=55 Identities=25% Similarity=0.351 Sum_probs=51.2
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.+++++|.+++.++++++++.++.+.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 5688999999999999999999999999999999999998899999999999864
No 164
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.42 E-value=0.00031 Score=62.54 Aligned_cols=54 Identities=26% Similarity=0.215 Sum_probs=50.2
Q ss_pred ccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 625 ~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
+++++|.+.+..+.+++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 578999888889999999999999999999999999998899999999999864
No 165
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.41 E-value=0.00027 Score=63.56 Aligned_cols=55 Identities=33% Similarity=0.405 Sum_probs=51.2
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.++.++|..++.++++++++.++++.|.+++...+||+|++++++|++|.+|+.+
T Consensus 56 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 4788999999999999999999999999999999999998899999999999864
No 166
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.41 E-value=0.00029 Score=63.92 Aligned_cols=55 Identities=33% Similarity=0.375 Sum_probs=50.3
Q ss_pred CccccccccCceEEeC--CCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLM--TTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~--~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.+++++|.++..++.. ++++.++++.|.+++...+||+|++++++|+||.+|+.+
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 4688999988888877 999999999999999999999998899999999999874
No 167
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.41 E-value=0.00021 Score=64.78 Aligned_cols=56 Identities=30% Similarity=0.400 Sum_probs=50.0
Q ss_pred cCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..++.++|.+ ++.++.+++++.++++.|.+++.+.+||+|++++++|+++.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 4578899975 3678999999999999999999999999998899999999999864
No 168
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.40 E-value=0.00029 Score=64.54 Aligned_cols=57 Identities=39% Similarity=0.530 Sum_probs=52.7
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...++.++|.+++..+.+++++.++++.|.+.+.+.+||+|++++++|++|..|+.+
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 456889999999999999999999999999999999999998899999999999874
No 169
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.40 E-value=0.00026 Score=64.18 Aligned_cols=55 Identities=27% Similarity=0.237 Sum_probs=50.9
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCC--CcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND--NILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~--g~lvGiVt~~dL~~ 678 (767)
.+++++|.+++.++.+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 45888999999999999999999999999999999999987 89999999999875
No 170
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.40 E-value=0.00033 Score=62.69 Aligned_cols=56 Identities=38% Similarity=0.407 Sum_probs=50.3
Q ss_pred cCccccccccCceEEeC-CCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLM-TTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~-~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..++.++|.+++..+.+ ++++.++++.|.+++.+.+||+|++++++|+||.+|+.+
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 45788999887777777 999999999999999999999998899999999999874
No 171
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00026 Score=65.09 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=51.9
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||.+|+.+
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 45788999999999999999999999999999999999998899999999999875
No 172
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.38 E-value=0.00038 Score=61.87 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=43.4
Q ss_pred CCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHh
Q 004220 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (767)
Q Consensus 708 ~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~ 760 (767)
++.++++++++.++.+.|.+++.+.+||+|++ +|+++|++|.+|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR----KQQFVGMLTITDFILIL 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC----CCEEEEEEEHHHHhhhe
Confidence 36789999999999999999999999999961 37999999999998753
No 173
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.36 E-value=0.00036 Score=62.56 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=51.1
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++++++|+|+.+|+.+
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 5788899999999999999999999999999999999998899999999999864
No 174
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.36 E-value=0.00087 Score=77.16 Aligned_cols=61 Identities=30% Similarity=0.339 Sum_probs=56.2
Q ss_pred ccCccccccccC--ceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHH
Q 004220 622 RRVFVSEVMRTR--YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (767)
Q Consensus 622 ~~~~V~dvM~~~--~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~ 682 (767)
.+.+|+++|+++ ++++++++++.++++.|.+++.+.+||+|++++++|+||.+|+.+....
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 356899999976 8899999999999999999999999999999999999999999998753
No 175
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.34 E-value=0.00038 Score=62.49 Aligned_cols=56 Identities=30% Similarity=0.327 Sum_probs=51.7
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...++.++|.+++..+.+++++.++++.|.+++.+.+||+| +|+++|+||.+|+.+
T Consensus 54 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 45689999999999999999999999999999999999998 789999999999864
No 176
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.34 E-value=0.00057 Score=50.73 Aligned_cols=47 Identities=40% Similarity=0.636 Sum_probs=42.8
Q ss_pred CeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHh
Q 004220 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (767)
Q Consensus 709 ~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~ 760 (767)
+.++.+++++.++.+.|.+.+.+.+||+++ +++++|+++.+|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-----EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-----CCeEEEEEEHHHHHHhh
Confidence 467899999999999999999999999996 78999999999998764
No 177
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.34 E-value=0.00056 Score=62.66 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=44.9
Q ss_pred CCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 708 ~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
++.++++++++.++.+.|.+++.+.+||+|+ +|+++|+++.+|+++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-----~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-----NGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEeHHHHHHHHh
Confidence 4688999999999999999999999999997 899999999999997653
No 178
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.34 E-value=0.0004 Score=65.55 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=51.0
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..+++++|.+++..+.+++++.++++.|.+++.+.+||+|+ ++++|+||.+|+.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 45799999999999999999999999999999999999986 89999999999875
No 179
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.34 E-value=0.00034 Score=63.00 Aligned_cols=55 Identities=33% Similarity=0.419 Sum_probs=51.1
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.++.++|.+++.++.+++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 3589999999999999999999999999999999999998899999999999874
No 180
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.34 E-value=0.0004 Score=64.85 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=52.0
Q ss_pred hccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 621 l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
+...++.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ ++++|++|.+|+.+
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 4445899999999999999999999999999999999999997 99999999999875
No 181
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00038 Score=62.54 Aligned_cols=55 Identities=29% Similarity=0.433 Sum_probs=50.8
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..++.++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|+||.+|+.+
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 45789999999999999999999999999999999999987 89999999999864
No 182
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.31 E-value=0.00074 Score=77.69 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=55.0
Q ss_pred cCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 623 RVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 623 ~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
..+++|+|++ +++++++++++.|+.+.|.+++.+.+||+|++++++|+||.+|+.+...
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 4689999998 8999999999999999999999999999999999999999999998753
No 183
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.30 E-value=0.0004 Score=75.75 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=53.2
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~ 679 (767)
..+++++|++++.++.+++++.++++.|.+++...+||+|++++++|+||.+|+.++
T Consensus 262 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 346899999999999999999999999999999999999988999999999999864
No 184
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.30 E-value=0.00053 Score=61.48 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=50.4
Q ss_pred ccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 625 ~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
++.++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 588899899999999999999999999999999999999999999999999864
No 185
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.30 E-value=0.00029 Score=66.05 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=52.0
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...++.++|.+++..+.+++++.++++.|.+.+.+.+||+| +|+++|+||.+|+.+
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 44689999999999999999999999999999999999999 899999999999874
No 186
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.30 E-value=0.00052 Score=63.51 Aligned_cols=52 Identities=29% Similarity=0.365 Sum_probs=47.7
Q ss_pred ccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 627 SEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 627 ~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.+.|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||..|+.+
T Consensus 74 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 3567788999999999999999999999999999998899999999999874
No 187
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.29 E-value=0.00054 Score=61.39 Aligned_cols=55 Identities=27% Similarity=0.342 Sum_probs=51.2
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|++|..|+.+
T Consensus 56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 4678899999999999999999999999999999999998899999999999874
No 188
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.29 E-value=0.00049 Score=61.94 Aligned_cols=56 Identities=38% Similarity=0.392 Sum_probs=50.8
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...++.++|.+++..+.+++++.++++.|.+++.+.+||+|++ +++|+|+.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 4467889999999999999999999999999999999999865 9999999999864
No 189
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00034 Score=63.91 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=52.3
Q ss_pred hccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 621 l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
....++.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 3556888999999999999999999999999999999999997 99999999999874
No 190
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00028 Score=65.43 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=48.3
Q ss_pred ccCccccccccCceEE------eCCCCHHHHHHHHHHcCCcEEEEeCCC-CcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTV------LMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V------~~~~tl~eal~~m~~~~~~~lpVvd~~-g~lvGiVt~~dL~~ 678 (767)
...+++++|+++...+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+.+
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3467889998765443 368899999999999999999999987 79999999999874
No 191
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00035 Score=63.23 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=48.8
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..+++++|.+++.++.+++++.++++.|.+.+ .+||+|++++++|++|.+|+.+
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 56799999999999999999999999998754 5999998899999999999875
No 192
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00034 Score=63.14 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=50.8
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+.+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 45788999999999999999999999999999999999997 89999999999875
No 193
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00045 Score=62.12 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=50.6
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..|+.+
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 35788999999999999999999999999999999999987 89999999999863
No 194
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0003 Score=74.05 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=95.7
Q ss_pred ccccccccccccchhhhhhhccCcccccccc--CceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHH
Q 004220 602 CEVESSLCIDDWNLEVEELKRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (767)
Q Consensus 602 ~~~~~~l~l~d~~~~~~~~l~~~~V~dvM~~--~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~ 679 (767)
+..|++.++.+|. +..+..+-.+++++|++ ....-.+...-..+++.+.+...+.+.+++.+++.+|+++.++..+.
T Consensus 253 l~~PAndYV~~Fv-~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~ 331 (386)
T COG4175 253 LLNPANDYVRDFV-RNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA 331 (386)
T ss_pred HcCccHHHHHHHH-hcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc
Confidence 3344444444443 33456677899999985 22222233445678888888888888888888889999999987643
Q ss_pred HHHHhhhcccccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004220 680 SKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (767)
Q Consensus 680 l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~ 759 (767)
.+.+ .+.++.+|+++.+.+....+.+. .++|+|+ +++++|++++.+++++
T Consensus 332 ------------------~~~~------~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-----~~r~vG~i~~~~vl~a 381 (386)
T COG4175 332 ------------------ALID------DVLTVDADTPLSEILARIRQAPC-PVAVVDE-----DGRYVGIISRGELLEA 381 (386)
T ss_pred ------------------cccc------cccccCccchHHHHHHHHhcCCC-ceeEEcC-----CCcEEEEecHHHHHHH
Confidence 1222 57789999999999998887665 6889998 8999999999999998
Q ss_pred hhh
Q 004220 760 CRF 762 (767)
Q Consensus 760 ~~~ 762 (767)
+..
T Consensus 382 L~~ 384 (386)
T COG4175 382 LAR 384 (386)
T ss_pred Hhc
Confidence 743
No 195
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.27 E-value=0.00048 Score=61.86 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=51.0
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..++.++|.+++..+++++++.++++.|.+++.+.+||+|+ ++++|++|.+|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 46788999999999999999999999999999999999987 89999999999874
No 196
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.27 E-value=0.00044 Score=62.21 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=52.0
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCC-CCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN-DNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~-~g~lvGiVt~~dL~~ 678 (767)
..++.++|++++.++++++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+.+
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 36899999999999999999999999999999999999997 799999999999874
No 197
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.26 E-value=0.00046 Score=62.03 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=51.0
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...+++++|.++...+++++++.++++.|.+++...+||+|+ ++++|+||.+|+.+
T Consensus 55 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 345788999999999999999999999999999999999985 89999999999875
No 198
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.25 E-value=0.00053 Score=60.83 Aligned_cols=53 Identities=28% Similarity=0.380 Sum_probs=49.7
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~ 677 (767)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|++|.+|+.
T Consensus 51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 4688999999999999999999999999999999999997 9999999999986
No 199
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.24 E-value=0.00063 Score=61.22 Aligned_cols=56 Identities=29% Similarity=0.368 Sum_probs=51.4
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..++.++|.+++.++.+++++.++++.|.+++...+||+|++|++.|++|.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 35788999999999999999999999999988999999998899999999999874
No 200
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.22 E-value=0.00089 Score=49.65 Aligned_cols=47 Identities=34% Similarity=0.323 Sum_probs=42.5
Q ss_pred ceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHH
Q 004220 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (767)
Q Consensus 634 ~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l 680 (767)
+.++.+++++.++.+.|.+++.+.+||+|++++++|+++.+++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 56788999999999999999999999999889999999999997654
No 201
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.22 E-value=0.00094 Score=63.05 Aligned_cols=50 Identities=26% Similarity=0.087 Sum_probs=45.7
Q ss_pred CCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhh
Q 004220 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 762 (767)
Q Consensus 708 ~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~ 762 (767)
++.++++++++.+|++.|.+++.+.+||+|+ +|+++|+||.+|+++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-----~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-----DDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHHHHHHhh
Confidence 4789999999999999999999999999997 7999999999999987653
No 202
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00053 Score=62.79 Aligned_cols=55 Identities=31% Similarity=0.403 Sum_probs=51.4
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.++.++|.+++..+.+++++.++++.|.+++...+||+|++++++|+++.+|+.+
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 4688999999999999999999999999999999999998899999999999875
No 203
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.17 E-value=0.0006 Score=60.80 Aligned_cols=54 Identities=26% Similarity=0.279 Sum_probs=49.3
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.++.++|.++..++++++++.++++.|.+++.+.+||+| +|+++|++|.+|+.+
T Consensus 50 ~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 357788989999999999999999999999999999998 689999999999864
No 204
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.17 E-value=0.001 Score=71.50 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=68.9
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCC
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADG 703 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~ 703 (767)
.++.++|++. .++++++++.++++.|++++.+.+||+|+.|.++|+||.+|+.+.+...-.......+. .++-..
T Consensus 133 ~~l~~l~r~~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~--~~i~~~-- 207 (292)
T PRK15094 133 FSMDKVLRQA-VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDD--IDFRQL-- 207 (292)
T ss_pred CCHHHHcCCC-cCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccc--cccEEe--
Confidence 4578888764 48999999999999999999999999999899999999999999885321100000000 011110
Q ss_pred CCccCCeEecCCCCHHHHHHHHH
Q 004220 704 ETCCVPCTATPNMNLLSALILMD 726 (767)
Q Consensus 704 ~~~~~~~~V~~d~sL~ea~~~m~ 726 (767)
......++..+++.+..+.+.
T Consensus 208 --~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 208 --SRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred --CCCeEEEEeccCHHHHHHHhC
Confidence 113567888899988888763
No 205
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.17 E-value=0.00062 Score=74.43 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=52.5
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~ 679 (767)
...+|+|+|++++.++.+++++.++++.|.+++.+.+||+| +++++|+||.+|+.+.
T Consensus 267 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 267 RQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 34689999999999999999999999999999999999997 6799999999999864
No 206
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.14 E-value=0.00083 Score=71.17 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=60.3
Q ss_pred hhhccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHh
Q 004220 619 ELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684 (767)
Q Consensus 619 ~~l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~ 684 (767)
+...+.++..+|++++.++.+.+|+..+.+.|.-.+++-+||+|++.+++|+||++|+++.++..+
T Consensus 244 ~~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q 309 (432)
T COG4109 244 DKKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQ 309 (432)
T ss_pred cCCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhc
Confidence 345667899999999999999999999999999999999999999999999999999999987543
No 207
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.13 E-value=0.0011 Score=58.58 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=43.2
Q ss_pred CCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004220 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (767)
Q Consensus 708 ~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~ 759 (767)
++.++++++++.++.+.|.+++.+.+||+|+ +|+++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-----DGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHhcC
Confidence 5778999999999999999999999999997 7999999999999763
No 208
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.11 E-value=0.0009 Score=61.00 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=52.1
Q ss_pred hccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 621 l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
....++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 4556799999999999999999999999999999999999986 89999999999874
No 209
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.11 E-value=0.00081 Score=60.38 Aligned_cols=54 Identities=30% Similarity=0.297 Sum_probs=48.0
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..+.++| +++.++.+++++.++++.|.+++.+.+||+|++++++|++|.+|+.+
T Consensus 57 ~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 4566666 46889999999999999999999999999998899999999999864
No 210
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.06 E-value=0.0012 Score=61.23 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=50.8
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeC--CCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd--~~g~lvGiVt~~dL~~ 678 (767)
...++.++|.++++++.+++++.++++.|.+++...+||++ ++++++|+||.+|+.+
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 34678899999999999999999999999999989999984 4689999999999874
No 211
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.04 E-value=0.0012 Score=59.81 Aligned_cols=52 Identities=46% Similarity=0.515 Sum_probs=49.3
Q ss_pred ccccccccCceEEeCCCCHHHHHHHHHH-cCCcEEEEeCCCC-cEEEEEehhhH
Q 004220 625 FVSEVMRTRYVTVLMTTLLIEALTLMLA-EKQSCAMIVDNDN-ILIGLLTLGDI 676 (767)
Q Consensus 625 ~V~dvM~~~~~~V~~~~tl~eal~~m~~-~~~~~lpVvd~~g-~lvGiVt~~dL 676 (767)
++.++|++++.++.+++++.++.+.|.+ ++.+.+||+|+++ +++|++|.+|+
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 6899999999999999999999999999 7999999999886 99999999986
No 212
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.02 E-value=0.002 Score=59.77 Aligned_cols=49 Identities=24% Similarity=0.521 Sum_probs=44.9
Q ss_pred CCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 708 ~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
++.++++++++.++.+.|.+++.+.+||+|+ +++++|+++.+|+++...
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~Gii~~~dl~~~~~ 51 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-----SGKILGMVTLGNLLSSLS 51 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHH
Confidence 5789999999999999999999999999997 789999999999997654
No 213
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.01 E-value=0.0022 Score=71.35 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=79.1
Q ss_pred hhhccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhc
Q 004220 619 ELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEM 698 (767)
Q Consensus 619 ~~l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dv 698 (767)
+..+-++++++|.+.......+.+ .+++. ++.+.++|+|+ |+++.++........ .+..+.+
T Consensus 269 ~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~- 330 (382)
T TIGR03415 269 NPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWA-------AEQEVES- 330 (382)
T ss_pred CcccceeHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhcc-------cccchhh-
Confidence 446667999999554333343333 44433 67888999985 889988866543210 1112444
Q ss_pred cccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 699 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 699 m~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
+.+ +..++++|+++.|++..+.+.+. -++|+| +|+++|+|++.++++++.
T Consensus 331 ~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~------~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 331 LEA------APTVINPDTLMRDVLAARHRTGG-AILLVE------NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred hcc------cCcccCCCCcHHHHHHHHhcCCC-CeEEee------CCeEEEEEeHHHHHHHHh
Confidence 333 57789999999999999888776 488888 699999999999999874
No 214
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.00 E-value=0.0012 Score=59.97 Aligned_cols=57 Identities=26% Similarity=0.243 Sum_probs=49.6
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCc---EEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQS---CAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~---~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...++.++|.+++..+.+++++.++++.|.+++.. ..+|+|++++++|+||.+|+.+
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 45689999999999999999999999999887753 4468888899999999999864
No 215
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.97 E-value=0.0025 Score=72.73 Aligned_cols=59 Identities=34% Similarity=0.351 Sum_probs=54.9
Q ss_pred cCccccccc-cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 623 RVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 623 ~~~V~dvM~-~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
..+++++|+ +++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+...
T Consensus 142 ~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 467999999 49999999999999999999999999999999999999999999998763
No 216
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.97 E-value=0.0022 Score=72.23 Aligned_cols=96 Identities=18% Similarity=0.038 Sum_probs=70.5
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCC
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADG 703 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~ 703 (767)
.+++++|+ ++..+++++++.++++.|++++.+..+|+|+.|..+|+||.+|+.+.+..+-.+..+.+ .+.+.+
T Consensus 255 ~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~----~~~i~~-- 327 (408)
T TIGR03520 255 FDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDE----DLIYSK-- 327 (408)
T ss_pred CCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcC----ccceEE--
Confidence 45678886 47799999999999999999999999999999999999999999998742111000001 111111
Q ss_pred CCccCCeEecCCCCHHHHHHHHHh
Q 004220 704 ETCCVPCTATPNMNLLSALILMDR 727 (767)
Q Consensus 704 ~~~~~~~~V~~d~sL~ea~~~m~~ 727 (767)
.......++.+++++|..+.+.-
T Consensus 328 -~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 328 -IDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred -eCCCeEEEEeccCHHHHHHHhCC
Confidence 01245778889999999988853
No 217
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.94 E-value=0.0014 Score=58.73 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=45.8
Q ss_pred ccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 629 vM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
+|.+++.++++++++.++.+.|.+++.+.+||++ +|+++|+||.+|+.+
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 7888999999999999999999999999999995 789999999999875
No 218
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.84 E-value=0.0025 Score=73.08 Aligned_cols=61 Identities=26% Similarity=0.458 Sum_probs=54.9
Q ss_pred ccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 690 SKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 690 ~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
+...+++++|++ ++.++.+++++.++.+.|.+++.+.+||+|+ +++++|+||.+|+.+...
T Consensus 332 l~~~~v~~im~~------~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 332 LKNATVKDLHLP------APVTVHPTETVGDAIEILREYGFDQLPVVTE-----AGKVLGSVTLRELLSALF 392 (454)
T ss_pred hccCCHHHhCcC------CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHh
Confidence 456779999988 7899999999999999999999999999997 789999999999998654
No 219
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.81 E-value=0.0017 Score=57.89 Aligned_cols=54 Identities=26% Similarity=0.291 Sum_probs=46.9
Q ss_pred cCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 623 ~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
..++.++|.+++.++++++++.++.+.|.+ .. ..||+|++++++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence 357889999899999999999999999988 33 4788988899999999999875
No 220
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.78 E-value=0.0026 Score=56.32 Aligned_cols=53 Identities=38% Similarity=0.421 Sum_probs=49.3
Q ss_pred cccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 626 V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
+.++|..+...+.+++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 66788889999999999999999999999999999999999999999999874
No 221
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.75 E-value=0.0024 Score=67.60 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=52.0
Q ss_pred cchhhccccCCCCccC-CeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 693 LLVSEMCSADGETCCV-PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 693 ~~V~dvm~~~~~~~~~-~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
.+++++|++ + +.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+++.+|+.+...
T Consensus 155 ~~v~~im~~------~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-----~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 155 VKVKDLMQT------TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-----NNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhHHHHhCC------CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-----CCCEEEEEEcHHHHHHHh
Confidence 567888887 6 889999999999999999999999999997 799999999999988653
No 222
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.002 Score=72.63 Aligned_cols=62 Identities=26% Similarity=0.314 Sum_probs=57.8
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~ 683 (767)
...+++++|.++++++.++++-+++.+.+++++.-.+||||++++++|+||.+|+.+.+..+
T Consensus 194 ~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 194 PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999988754
No 223
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.66 E-value=0.0034 Score=59.70 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=51.3
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
...++.++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 87 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 456788999999999999999999999999999999999987 89999999999864
No 224
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.62 E-value=0.0037 Score=55.64 Aligned_cols=54 Identities=26% Similarity=0.281 Sum_probs=48.6
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ ++++|++|.+|+.+
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 3577889889999999999999999999999999999985 79999999999864
No 225
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.35 E-value=0.0056 Score=69.02 Aligned_cols=60 Identities=30% Similarity=0.396 Sum_probs=55.4
Q ss_pred hccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 621 l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
....+|+++|+.++.++..++-+-||+-.|.+++++++||++ +|+++|+||..||++...
T Consensus 211 ~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 211 SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred CcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 344689999999999999999999999999999999999997 799999999999998764
No 226
>PRK11573 hypothetical protein; Provisional
Probab=96.24 E-value=0.015 Score=65.60 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=56.0
Q ss_pred cccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHh
Q 004220 689 RSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (767)
Q Consensus 689 ~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~ 760 (767)
...+..++|+|++ ..++..++.+++++++.+.+.++++.++||.+++ .++++|++..+|++...
T Consensus 183 ~l~~~~v~eiMtP----r~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~----~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 183 DLEKVTVDDIMVP----RNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS----LDDAISMLRVREAYRLM 246 (413)
T ss_pred ccCCCChhhcCCc----cceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC----CCceEEEEEHHHHHHHh
Confidence 3577889999998 3468899999999999999999999999999862 47899999999998754
No 227
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.98 E-value=0.014 Score=64.62 Aligned_cols=57 Identities=26% Similarity=0.291 Sum_probs=52.8
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
-.+.+.|.+...++++++++.+++..|.+++.. +||+|++|+++|+||..++.+.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 302 QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 357888888899999999999999999999988 999999999999999999999875
No 228
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=95.50 E-value=0.028 Score=63.94 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=58.5
Q ss_pred cccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 689 RSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 689 ~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
...+.+++++|++ ..+...++.+++.+++.+.+.++++.++||.+++ .+.++|+++.+|++....+.
T Consensus 202 ~l~~~~v~eiMtP----R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 202 DLDDRTVREIMTP----RTDIVALDLTDTVEELIELILESGHSRIPVYDGD----LDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred ccCCcEeeeEeee----cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----CCcEEEEEEHHHHHHHHhcC
Confidence 4567889999998 4568899999999999999999999999999942 67899999999999987554
No 229
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.03 Score=60.73 Aligned_cols=59 Identities=25% Similarity=0.261 Sum_probs=54.3
Q ss_pred ccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHH
Q 004220 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (767)
Q Consensus 622 ~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l 680 (767)
+...++|+|+++.++.+.+.+++++-+.+++++...+||||++|+++.++++.||.+..
T Consensus 169 ~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 169 NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 34678999999999999999999999999999999999999999999999999998754
No 230
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.31 E-value=0.094 Score=54.23 Aligned_cols=146 Identities=14% Similarity=0.037 Sum_probs=89.6
Q ss_pred cccccccccccccccchhhhhhhccCccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHH
Q 004220 599 INLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (767)
Q Consensus 599 ~~L~~~~~~l~l~d~~~~~~~~l~~~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~ 678 (767)
+.++-|+++..--|...|.+-.-+-..+..-+.+.++.|..| +.||+++- +.+.|.| +|+++-+=+..++..
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~ 225 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILA 225 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHh
Confidence 444445554444444444333333334444444566666655 67888753 4577887 799999999988876
Q ss_pred HHHHHh---------hhcccccccchhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEE
Q 004220 679 FSKYAQ---------AKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVG 749 (767)
Q Consensus 679 ~l~~~~---------~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvG 749 (767)
.-.+.- .....+....+.+.|...... +-..+.......+++..+...+...+||+|+ +|+++|
T Consensus 226 ~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~-----~g~~~G 298 (309)
T COG1125 226 NPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPA--DGEPLLEGFVDRDALSDFLARGRSVLPVVDE-----DGRPLG 298 (309)
T ss_pred CccHHHHHHHhccccccccccchhhHHHhhcccccc--cCCccccchhhHHHHHHHHhcCCceeEEECC-----CCcEee
Confidence 443210 011223445566666542111 1122344555667888888899999999998 899999
Q ss_pred EEeHHHHHHH
Q 004220 750 LLDRESIILA 759 (767)
Q Consensus 750 IVt~~DIl~~ 759 (767)
.||++|++..
T Consensus 299 ~vt~~~l~~~ 308 (309)
T COG1125 299 TVTRADLLDE 308 (309)
T ss_pred EEEHHHHhhh
Confidence 9999999864
No 231
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.90 E-value=0.054 Score=60.86 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=51.5
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
.++.+.+.++..++++++++.+++..+.++... +||+|++|+++|+|+..++.+.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 337 QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 467778888899999999999999999987766 999999999999999999999885
No 232
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=94.13 E-value=0.013 Score=59.14 Aligned_cols=98 Identities=21% Similarity=0.195 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeEecCCCCHHH
Q 004220 641 TLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLS 720 (767)
Q Consensus 641 ~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~e 720 (767)
.+-.|.+.++++...+.+ +|.+ |..-+...+ .+.+..|+|+|.+ .....++..+.++.+
T Consensus 32 knr~eLl~liRdse~n~L--iD~d-------t~~mlEGvm--------~iadl~vrDiMIP----RSQM~~l~~~~~l~~ 90 (293)
T COG4535 32 KNREELLELIRDSEQNEL--IDAD-------TLDMLEGVM--------DIADLRVRDIMIP----RSQMITLKRNQTLDE 90 (293)
T ss_pred cCHHHHHHHHHHhhhccc--cChh-------HHHHHHHHH--------HHHHhhHhhhccc----HHHheeccccCCHHH
Confidence 356777777776654433 2322 333333333 2456779999987 345788999999999
Q ss_pred HHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhhhc
Q 004220 721 ALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 763 (767)
Q Consensus 721 a~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~~~ 763 (767)
.+..+.+...+++||+.++ ++.+.||+-.+|+++.++.+
T Consensus 91 ~l~~iiesaHSRfPVi~ed----kD~v~GIL~AKDLL~~~~~~ 129 (293)
T COG4535 91 CLDVIIESAHSRFPVISED----KDHVEGILLAKDLLPFMRSD 129 (293)
T ss_pred HHHHHHHhccccCCcccCC----chhhhhhhhHHHHHHHhcCC
Confidence 9999999999999999872 67899999999999987655
No 233
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.83 E-value=0.11 Score=53.71 Aligned_cols=80 Identities=23% Similarity=0.195 Sum_probs=58.8
Q ss_pred cccccccccccccccchhhhhh---hccCccccccccCce----EEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEE
Q 004220 599 INLCEVESSLCIDDWNLEVEEL---KRRVFVSEVMRTRYV----TVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLL 671 (767)
Q Consensus 599 ~~L~~~~~~l~l~d~~~~~~~~---l~~~~V~dvM~~~~~----~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiV 671 (767)
.++++.|++.|+.+|.+..+.. +...++.+.|.+... .+.....-.+++..+...+...+||+|++|+++|.|
T Consensus 221 ~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~v 300 (309)
T COG1125 221 DEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTV 300 (309)
T ss_pred HHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEE
Confidence 3556778888888887655433 344577777766332 233444556677788888889999999999999999
Q ss_pred ehhhHHH
Q 004220 672 TLGDIEE 678 (767)
Q Consensus 672 t~~dL~~ 678 (767)
|..++..
T Consensus 301 t~~~l~~ 307 (309)
T COG1125 301 TRADLLD 307 (309)
T ss_pred EHHHHhh
Confidence 9999875
No 234
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=92.16 E-value=0.67 Score=50.36 Aligned_cols=50 Identities=30% Similarity=0.239 Sum_probs=46.3
Q ss_pred cCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
.++..+++++++.+-+..|++++.+...|||+-|.+.|+||.+|+++.+-
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIV 324 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIV 324 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHh
Confidence 37788999999999999999999999999999999999999999998774
No 235
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=87.17 E-value=1.2 Score=51.55 Aligned_cols=127 Identities=18% Similarity=0.047 Sum_probs=87.5
Q ss_pred hhhhccCcccccccc--CceEEeCCCCHH-HHHHHHHHcCCcEEEEeCCCC-cEEEEEehhhHHHHHHHHhhhccccccc
Q 004220 618 EELKRRVFVSEVMRT--RYVTVLMTTLLI-EALTLMLAEKQSCAMIVDNDN-ILIGLLTLGDIEEFSKYAQAKTSRSKKL 693 (767)
Q Consensus 618 ~~~l~~~~V~dvM~~--~~~~V~~~~tl~-eal~~m~~~~~~~lpVvd~~g-~lvGiVt~~dL~~~l~~~~~~~~~~~~~ 693 (767)
...+....++|+|++ ++..+..+..+. +......+++++.+||.+.+. .-+|.+=...+.+... ........
T Consensus 198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~----~~~~~~~~ 273 (498)
T KOG2118|consen 198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQ----VEVPLEPL 273 (498)
T ss_pred hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhc----cccccccc
Confidence 445677899999998 677777777766 555666789999999998642 2333322222223321 11134556
Q ss_pred chhhccccCCCCccCCeEecCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHhh
Q 004220 694 LVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (767)
Q Consensus 694 ~V~dvm~~~~~~~~~~~~V~~d~sL~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt~~DIl~~~~ 761 (767)
++.+.+.. ....+++++++.+..+.|++.+.+.+.|.+ ...-+++++..|+ +...
T Consensus 274 ~v~~~~~~------~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~------~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 274 PVSESALL------RLPLVPENMPLLDLLNEFQKGKSHMAVVRN------GHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred cchhhhcc------ccccCCCcccHHHHHHHHhhhhceeEEEec------CCcceeeEeccch-hhhc
Confidence 67777666 688899999999999999987776665555 4567899999998 5544
No 236
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=86.65 E-value=1.1 Score=50.05 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=45.7
Q ss_pred CccccccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 624 ~~V~dvM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
.++.+ +.++..++++++++.|++..+.++++. ++|+|+ |+++|+|+..+++..+.
T Consensus 326 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 326 QEVES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cchhh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 34556 667788999999999999988877654 788885 99999999999998763
No 237
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=76.62 E-value=4.3 Score=43.62 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=44.4
Q ss_pred ccccCceEEeCCCCHHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHH
Q 004220 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (767)
Q Consensus 629 vM~~~~~~V~~~~tl~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~ 681 (767)
.+.+++.++..++++.+.+..+.+.. ..++|+|++++++|++++.++..++.
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence 56668888999999999998877665 45889999999999999999998874
No 238
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=38.22 E-value=3.3e+02 Score=33.65 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004220 348 GELPLYLLLGVLCGLISLTLSRCTTYM 374 (767)
Q Consensus 348 ~~l~~~illGii~Gl~g~~f~~~~~~~ 374 (767)
.++...++=+++++.+..+|...+..+
T Consensus 113 y~~~~~~~e~~l~~~l~~if~~~~~~~ 139 (764)
T TIGR02865 113 LDFILSIVEASLSFVLYYIFNYSIPCL 139 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888899999999998765443
No 239
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=30.40 E-value=83 Score=37.80 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCcEEEEEehhhHHHHHHHHhh-hcccccccchhhccccCC----CCccCCeEecCCCC
Q 004220 643 LIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA-KTSRSKKLLVSEMCSADG----ETCCVPCTATPNMN 717 (767)
Q Consensus 643 l~eal~~m~~~~~~~lpVvd~~g~lvGiVt~~dL~~~l~~~~~-~~~~~~~~~V~dvm~~~~----~~~~~~~~V~~d~s 717 (767)
+.+..+.+...+ ..+.++|++|.++.+....++.+....... ....+.+ +.+-++. .....+..|.....
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E----~~~GTnaig~al~~~~pv~v~g~EH 135 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAE----GIIGTNALSLAAISGQPVKTMGDQH 135 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccch----hccCcCHHHHHHhcCCceEEecHHH
Confidence 334444444444 688899999999999999988776543111 0111111 1111110 01124666666655
Q ss_pred HHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEe
Q 004220 718 LLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLD 752 (767)
Q Consensus 718 L~ea~~~m~~~~~~~lpVVd~~~~~~~g~lvGIVt 752 (767)
..+.. ....+...||.|+ +|+++|+++
T Consensus 136 ~~~~~---~~~~c~aaPI~d~-----~G~liGvl~ 162 (638)
T PRK11388 136 FKQAL---HNWAFCATPVFDS-----KGRLTGTIA 162 (638)
T ss_pred HHHhc---cCceEEeeEEEcC-----CCCEEEEEE
Confidence 55443 4456678999997 899999996
No 240
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.50 E-value=82 Score=29.28 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004220 351 PLYLLLGVLCGLISLTL 367 (767)
Q Consensus 351 ~~~illGii~Gl~g~~f 367 (767)
...|++|+++|++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 46889999999998876
No 241
>PRK10026 arsenate reductase; Provisional
Probab=27.60 E-value=3.9e+02 Score=25.46 Aligned_cols=107 Identities=10% Similarity=0.014 Sum_probs=60.7
Q ss_pred ceEEeCCCCHHHHHHHHHHcCCcEEEE--eCCCCcEEEEEehhhHHHHHHHHhhhcccccccchhhccccCCCCccCCeE
Q 004220 634 YVTVLMTTLLIEALTLMLAEKQSCAMI--VDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (767)
Q Consensus 634 ~~~V~~~~tl~eal~~m~~~~~~~lpV--vd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~ 711 (767)
+...+.-.|...|.+.+.++++..-.+ .. +. .|..+|.+.+.... ....+++++....-+..-.
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~-~p-----pt~~eL~~~l~~~g--------~~~~~lint~~~~yr~L~~ 71 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEPTIIHYLE-TP-----PTRDELVKLIADMG--------ISVRALLRKNVEPYEELGL 71 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcEEEeeeC-CC-----cCHHHHHHHHHhCC--------CCHHHHHHcCCchHHHcCC
Confidence 334444568999999999988665332 22 22 68888888875321 1133333332111111100
Q ss_pred ecCCCCHHHHHHHHHhcCC-CEeEE-EeccCCCCCCeEEEEEeHHHHHHHh
Q 004220 712 ATPNMNLLSALILMDRYGV-NQVPV-VMEHIPGQRGQLVGLLDRESIILAC 760 (767)
Q Consensus 712 V~~d~sL~ea~~~m~~~~~-~~lpV-Vd~~~~~~~g~lvGIVt~~DIl~~~ 760 (767)
-..+.+.+++++.|.++.. =.=|| +++ ++.++|- ..+.+...+
T Consensus 72 ~~~~ls~~e~l~ll~~~P~LIKRPIi~~~-----~~a~i~R-p~e~v~~~l 116 (141)
T PRK10026 72 AEDKFTDDQLIDFMLQHPILINRPIVVTP-----LGTRLCR-PSEVVLEIL 116 (141)
T ss_pred CccCCCHHHHHHHHHhCccceeCcEEEcC-----CCeEEEC-CHHHHHHHh
Confidence 1145788999999998764 22244 443 6777776 555555555
No 242
>PRK01844 hypothetical protein; Provisional
Probab=27.11 E-value=1.2e+02 Score=25.27 Aligned_cols=18 Identities=11% Similarity=0.061 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004220 351 PLYLLLGVLCGLISLTLS 368 (767)
Q Consensus 351 ~~~illGii~Gl~g~~f~ 368 (767)
.+.++++++.|+++.+|.
T Consensus 7 I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 7 ILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445667788888877775
No 243
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=25.76 E-value=5.8e+02 Score=30.94 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcCCchhhHHHHhhhhhHHHHHhccc
Q 004220 249 KSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNA 284 (767)
Q Consensus 249 a~ig~~~~~~~~~~~~~~~~l~~~g~aAg~aa~F~a 284 (767)
-+++..++++-+..-...++|++.|++--+++.|++
T Consensus 345 iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~ 380 (665)
T KOG0236|consen 345 IAIGKSFASLHGYKVDSNQELIALGISNILSSFFGC 380 (665)
T ss_pred HHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhce
Confidence 455666666555443445589999999999999883
No 244
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=24.10 E-value=8.3e+02 Score=25.70 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004220 353 YLLLGVLCGLISLTLSR 369 (767)
Q Consensus 353 ~illGii~Gl~g~~f~~ 369 (767)
...+|+++|+.+.....
T Consensus 19 i~~~Givg~LigiYla~ 35 (265)
T TIGR01148 19 IMALGIVGGLVGIYLGN 35 (265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56789999999888865
No 245
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.30 E-value=1.3e+02 Score=27.18 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhcCCchhhHHHHhhhhhHHHHHhc
Q 004220 245 VEIGKSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGF 282 (767)
Q Consensus 245 v~iga~ig~~~~~~~~~~~~~~~~l~~~g~aAg~aa~F 282 (767)
+..|+.+|..+-++++-++--.-.++..|++||+=-+.
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 56789999999888887777666788889998875443
Done!