RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004220
(767 letters)
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 282 bits (724), Expect = 2e-87
Identities = 90/462 (19%), Positives = 182/462 (39%), Gaps = 67/462 (14%)
Query: 91 VIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPAC 150
++++ +VGL+TG+ F V+ + + A L P A + ++
Sbjct: 31 TLVAAIVVGLITGVLGAGFKSAVNNMLQWR-----SQLAQILAPIPPLAWLVTALISGGM 85
Query: 151 GGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPH--PQAQAKDDISVITVSSTTSLP 208
++ R+A PQ +
Sbjct: 86 VALSFWLM--KRFA-----------------PDTSGSGIPQIEG---------------- 110
Query: 209 TIYYDYLKIAFQ-PLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRRPRRKV 267
+ + + +K V ++LG G G EGP++++G SI + G F +
Sbjct: 111 HLEGKLPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKATQENQR 170
Query: 268 SLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVS 327
L+A G+ AG+++ FNA +AG E + P + + A + ++ V+A+++
Sbjct: 171 ILIAVGAGAGLATAFNAPLAGVALIGE-EMHPRFRSQTLAYHS-----LLFGCVMATIIL 224
Query: 328 EVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI 387
+ G + E+ L ++++LG+L G++ T +R + ++D + +
Sbjct: 225 RMIRGQSAIISLTEFKRVPLDSLWMFIILGILFGVMGYTFNRG---LFKVLDWFDRLPPL 281
Query: 388 PKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVAT 447
+ G +G+++L + G V S+ L+ + + + T
Sbjct: 282 ATKWKGFLLGSIIGILSLFPLPLTDGGDNAVLWAFNSQ-----SHFSTLILVFCGRFLLT 336
Query: 448 SLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGM 507
+C SG +GG +AP L I + +A + + ++ P + GM
Sbjct: 337 LICYGSGAIGGIFAPMLGIASIVSVAMARHFH----------LLFPSQIPEPAVMAIAGM 386
Query: 508 AATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFT 549
A +A + PLT++LL E+T +Y ++LPLL ++S
Sbjct: 387 GALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVA 428
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 277 bits (710), Expect = 2e-85
Identities = 97/468 (20%), Positives = 182/468 (38%), Gaps = 73/468 (15%)
Query: 91 VIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPAC 150
++ + +VG L G+ V F+KGV +++ + + ++ P + L A
Sbjct: 35 ILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNY------PLLLTVAFLCSAV 88
Query: 151 GGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPH------PQAQAKDDISVITVSST 204
L + +YA P P+ +
Sbjct: 89 LAMFGYFLVR-KYA---------------------PEAGGSGIPEIEG------------ 114
Query: 205 TSLPTIYYDYLKIAFQPLL-KAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRRP 263
+ ++ L K TLG G LG EGP+V+IG +I + V ++F +
Sbjct: 115 ----ALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKG 170
Query: 264 RR-KVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVI 322
+ +L+A G+AAG+++ FNA +AG F +E + S V + ++
Sbjct: 171 DEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLIS------IKAVFIGVIM 224
Query: 323 ASVVSEVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQ 382
++++ + V + L LYL+LG++ G+ ++ M ++ +
Sbjct: 225 STIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH 284
Query: 383 KDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAA 442
N + G GL+ + P GF + I + ML+ + A
Sbjct: 285 GGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN-----FSMGMLVFIFVA 339
Query: 443 KIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502
+++ T LC +SG GG +AP L +G G A+G +
Sbjct: 340 RVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAV----------ELFPQYHLEAGTF 389
Query: 503 GLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTS 550
+ GM A LA + PLT ++L+ E+T +Y+++LP++ ++
Sbjct: 390 AIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQ 437
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 213 bits (543), Expect = 6e-60
Identities = 109/728 (14%), Positives = 221/728 (30%), Gaps = 174/728 (23%)
Query: 91 VIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPAC 150
++ L+G+ + + + VH + + G +I V+
Sbjct: 10 LVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAG--------YILYVVSGVA 61
Query: 151 GGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTI 210
+ + + +A+ + ++ S
Sbjct: 62 LCLLSTFWCA-VLS-----------------------TEAEGSGLPQMKSILSGFYDKMR 97
Query: 211 YYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL-----FDRRPRR 265
L++ F KA+ +G G +G EGP+V I IA L
Sbjct: 98 SALELRVLF---AKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTDRAL 154
Query: 266 KVSLVAAGSAAGISSGFNAAVAGCFFAVESVI--WPSSAADSSASLAYTTSMVILSAVIA 323
++ +AA A G++S F A + G +++E++ + +LSA+
Sbjct: 155 RLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQ----------AFWKGVLSALSG 204
Query: 324 SVVSEV--GLGSEPAFKVPEYDFR--SPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVD 379
++V E+ AF+ +D S + LY +LG L G++ RC + +
Sbjct: 205 AIVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRM 264
Query: 380 NLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKG--LTADMLL 437
G + + L + F ++ L ++ P + L+
Sbjct: 265 R--HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 438 QLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVA 497
+ K + +L L G + PS IGA G YG+ + +
Sbjct: 323 LMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA-----------I 371
Query: 498 SPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLSSWFTSGQM 553
P +Y +VG AA AGV + L+ +++FE+T R ++P+ L AV + + F
Sbjct: 372 VPGSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRS-- 428
Query: 554 RRRDVKETKVAVHANTNRKRQFEIYTS--RTRGLSSSDLLAEEEPYAINLCEVESSLCID 611
+Y + + L PY
Sbjct: 429 -----------------------LYETLVLMKHL----------PY-------------- 441
Query: 612 DWNLEVEELKRRVFVSEVMR--TRYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILI 668
+ + + E+M + + ++ + ++D + L+
Sbjct: 442 -MPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLL 500
Query: 669 GLLTLGDIEEFSKYAQAKTSRS-------------------------------------K 691
G ++ +I + ++
Sbjct: 501 GAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRT 560
Query: 692 KLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
++ S P T + L + + V +RG+LVG++
Sbjct: 561 ATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT------ERGKLVGIV 614
Query: 752 DRESIILA 759
+RE +
Sbjct: 615 EREDVAYG 622
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 87.5 bits (217), Expect = 5e-19
Identities = 21/145 (14%), Positives = 55/145 (37%), Gaps = 13/145 (8%)
Query: 617 VEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
++L V M T+ T+ L +A+ LML ++D+DN ++G++T+ +
Sbjct: 149 YKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA 208
Query: 677 EEF--SKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVP 734
+ + +V ++ + T ++ A M + +
Sbjct: 209 IKQLAKAVDKLDPDYFYGKVVKDVMVTN------LVTIDELASVNRAAAEMIVKRIGSLL 262
Query: 735 VVMEHIPGQRGQLVGLLDRESIILA 759
++ + + G++ +++A
Sbjct: 263 ILNKD-----NTIRGIITERDLLIA 282
Score = 72.5 bits (178), Expect = 5e-14
Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 17/132 (12%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
+ + M VTV T+ A+ +M+ +VD ++ +G++T + K
Sbjct: 95 IIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK---- 150
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
+ V S T + L A+ LM R G ++PV+ +
Sbjct: 151 --DLDEIFPVKVFMSTK------VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-----N 197
Query: 746 QLVGLLDRESII 757
++VG++ + I
Sbjct: 198 KVVGIVTVVNAI 209
Score = 66.3 bits (162), Expect = 5e-12
Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 19/143 (13%)
Query: 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682
+ + +M + L A + ++ + + GLLT D+ +
Sbjct: 19 GMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEK--IEGLLTTRDLLSTVES 76
Query: 683 ------AQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVV 736
+Q + + + + P T + +A+ +M +PVV
Sbjct: 77 YCKDSCSQGDLYHISTTPIIDYMTPN------PVTVYNTSDEFTAINIMVTRNFGSLPVV 130
Query: 737 MEHIPGQRGQLVGLLDRESIILA 759
+ + VG++ +L
Sbjct: 131 DIN-----DKPVGIVTEREFLLL 148
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 76.9 bits (190), Expect = 6e-17
Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 16/134 (11%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
+ M + + V +T + EA LM+ +++++D ++G T DI
Sbjct: 9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI----IRRVI 64
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
+ V + + + TA N L L M + + + + + G
Sbjct: 65 VPGLPYDIPVERIMTRN------LITANVNTPLGEVLRKMAEHRIKHILIE------EEG 112
Query: 746 QLVGLLDRESIILA 759
++VG+ ++ A
Sbjct: 113 KIVGIFTLSDLLEA 126
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 75.4 bits (186), Expect = 4e-16
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V +++ + V T + E + +L + + + V DN L+G++ + + + S +
Sbjct: 18 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFF 77
Query: 686 KTSRSKKLLVSEMCSADGETCCV------PCTATPNMNLLSALILMDRYGVNQVPVVMEH 739
++L+ S M + P + L AL LM + ++PVV E
Sbjct: 78 GFIPKEELIRSSMKRLIAKN--ASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEK 135
Query: 740 IPGQRGQLVGLLDRESIILA 759
G++VG L+ I+LA
Sbjct: 136 -----GEIVGDLNSLEILLA 150
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 76.7 bits (189), Expect = 2e-15
Identities = 19/150 (12%), Positives = 49/150 (32%), Gaps = 19/150 (12%)
Query: 617 VEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
++++ + + + + L + M+ +V + L+G++T D
Sbjct: 141 LDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDF 199
Query: 677 -------EEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYG 729
F+ + + E+ D TA L +M
Sbjct: 200 IKLLGSDWAFNHMQTGNVREITNVRMEEIMKRD------VITAKEGDKLKKIAEIMVTND 253
Query: 730 VNQVPVVMEHIPGQRGQLVGLLDRESIILA 759
+ +PVV E+ ++ G++ + ++
Sbjct: 254 IGALPVVDEN-----LRIKGIITEKDVLKY 278
Score = 69.4 bits (170), Expect = 5e-13
Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 24/173 (13%)
Query: 585 LSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLI 644
++S D++ + I + + V E+M +T+ +
Sbjct: 52 ITSMDIVDF-------MGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADID 104
Query: 645 EALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGE 704
EA+ L + A IV+++N LI L+T D+ + ++ + + D
Sbjct: 105 EAIETFLTKNVGGAPIVNDENQLISLITERDVIRA-----LLDKIDENEVIDDYITRD-- 157
Query: 705 TCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESII 757
ATP L M R G ++PVV E G+LVG++ I
Sbjct: 158 ----VIVATPGERLKDVARTMVRNGFRRLPVVSE------GRLVGIITSTDFI 200
Score = 68.6 bits (168), Expect = 7e-13
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 10/137 (7%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVD-NDNILIGLLTLGDIEEFSKYAQ 684
+ + VTV TT + +AL M K +V+ +N ++G++T DI +F
Sbjct: 6 MKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGS 65
Query: 685 AKTSRSKKLLVSEMCSADGETCCV----PCTATPNMNLLSALILMDRYGVNQVPVVMEHI 740
+K + + + + + T N ++ A+ V P+V +
Sbjct: 66 KYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDE- 124
Query: 741 PGQRGQLVGLLDRESII 757
QL+ L+ +I
Sbjct: 125 ----NQLISLITERDVI 137
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 72.6 bits (179), Expect = 2e-15
Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 15/126 (11%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
++M V L A M I +D+ L G+LT DI A
Sbjct: 10 ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDI---VIKGLA 66
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
E+ N ++ L +M+ + V +VPV+
Sbjct: 67 AGLDPNTATAGELARDS------IYYVDANASIQEMLNVMEEHQVRRVPVI------SEH 114
Query: 746 QLVGLL 751
+LVG++
Sbjct: 115 RLVGIV 120
Score = 38.7 bits (91), Expect = 0.001
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
E+ R V + E L +M + ++ L+G++T DI
Sbjct: 76 AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHR-LVGIVTEADI 125
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 72.7 bits (179), Expect = 2e-15
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 617 VEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+ + + + V +VM +T ++EA ML K S ++D++N +IG++T DI
Sbjct: 1 MIDTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDI 60
Query: 677 EEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMD-----RYGVN 731
Y + + + + ++ + D T + ++L A+ MD +N
Sbjct: 61 ----GYNLIRDKYTLETTIGDVMTKD------VITIHEDASILEAIKKMDISGKKEEIIN 110
Query: 732 QVPVVMEHIPGQRGQLVGLLDRESII 757
Q+PVV ++ +LVG++ II
Sbjct: 111 QLPVVDKN-----NKLVGIISDGDII 131
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 73.2 bits (180), Expect = 2e-15
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 16/149 (10%)
Query: 614 NLEVEELKRRVFVSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLL 671
E E + ++ T A L+ + +V ++ +G +
Sbjct: 6 AKEFETFLLGQ-EETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTI 64
Query: 672 TLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVN 731
L DI + + M D +P+ + L +
Sbjct: 65 GLRDIMAYQMEHDLSQEIMADTDIVHMTKTD------VAVVSPDFTITEVLHKLVDESF- 117
Query: 732 QVPVVMEHIPGQRGQLVGLLDRESIILAC 760
+PVV G G++ R+SI+ A
Sbjct: 118 -LPVVDAE-----GIFQGIITRKSILKAV 140
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 73.6 bits (181), Expect = 3e-15
Identities = 19/126 (15%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V ++M + + TV T + +A+ +M ++ D++ +GLL+ I K
Sbjct: 11 VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSI---IKRFIP 67
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
+ + ++ + + + ++ + G+ + VV + G
Sbjct: 68 RNKKPDEVPIRLVMRKP------IPKVKSDYDVKDVAAYLSENGLERCAVVDDP-----G 116
Query: 746 QLVGLL 751
++VG++
Sbjct: 117 RVVGIV 122
Score = 44.7 bits (106), Expect = 2e-05
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
+ VMR V + + + +VD+ ++G++TL D+ ++
Sbjct: 77 IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDL------SRY 130
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATP 714
+ S ++ + D + C C
Sbjct: 131 LSRASITDILLSHRTKDYQHLCPKCGVGV 159
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 71.8 bits (177), Expect = 3e-15
Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V +VM T T+ +T L + L + + +++V +G++T D+ E A A
Sbjct: 3 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGV-RVGIVTTWDVLE----AIA 57
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
+ ++ V E+ D T +P + A M + V ++ V +
Sbjct: 58 EGDDLAEVKVWEVMERD------LVTISPRATIKEAAEKMVKNVVWRLLVE------EDD 105
Query: 746 QLVGLLDRESIILA 759
+++G++ I+ A
Sbjct: 106 EIIGVISATDILRA 119
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 72.4 bits (178), Expect = 5e-15
Identities = 17/141 (12%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 617 VEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+ + +++ V + + V + + +A+ M E +VD D +L+G+L+ D+
Sbjct: 10 LADKLKKLQVKDFQ-SIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDL 68
Query: 677 EEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVV 736
A + V + + ++ + ++ +PV+
Sbjct: 69 ----LRASIGQQELTSVPVHIIMTRMPN----ITVCRREDYVMDIAKHLIEKQIDALPVI 120
Query: 737 MEHIPGQRGQLVGLLDRESII 757
+ + +++G + + ++
Sbjct: 121 KDT--DKGFEVIGRVTKTNMT 139
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 73.2 bits (180), Expect = 7e-15
Identities = 18/133 (13%), Positives = 43/133 (32%), Gaps = 21/133 (15%)
Query: 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684
V + + + V + + E L M + + ++ D + G++ D+ +
Sbjct: 14 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL--- 70
Query: 685 AKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQR 744
+ +++ N+ AL+L + +PVV E
Sbjct: 71 ------DSSVFNKVSLP-------DFFVHEEDNITHALLLFLEHQEPYLPVVDEE----- 112
Query: 745 GQLVGLLDRESII 757
+L G + +
Sbjct: 113 MRLKGAVSLHDFL 125
Score = 48.6 bits (116), Expect = 2e-06
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 14/131 (10%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V + V + AL L L ++ +VD + L G ++L D E A A
Sbjct: 74 VFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALA 133
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
+ V + GE L + + +N + V+ +
Sbjct: 134 MDVPGIRFSV-LLEDKPGE-------------LRKVVDALALSNINILSVITTRSGDGKR 179
Query: 746 QLVGLLDRESI 756
+++ +D
Sbjct: 180 EVLIKVDAVDE 190
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 71.7 bits (176), Expect = 8e-15
Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 17/149 (11%)
Query: 615 LEVEELKRRVFVSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLT 672
E E ++ V + + V L AL ++ S ++D L GL++
Sbjct: 3 WEHNEF-MQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLIS 61
Query: 673 LGDI-EEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVN 731
+ + + + + R + + V E+ + + + +L+ A+ L+ +
Sbjct: 62 MTMMMDAILGLERIEFERLETMKVEEVMNRN------IPRLRLDDSLMKAVGLIVNHPF- 114
Query: 732 QVPVVMEHIPGQRGQLVGLLDRESIILAC 760
V V + G G+ R ++
Sbjct: 115 -VCVENDD-----GYFAGIFTRREVLKQL 137
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 71.2 bits (175), Expect = 1e-14
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 16/141 (11%)
Query: 614 NLEVEELKRRVF-VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLT 672
NL + + V + + VTV + EA + A K ++ D D +++G+ T
Sbjct: 16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFT 75
Query: 673 LGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQ 732
D+ K + + S + VS + + N + +M
Sbjct: 76 ERDL---VKAVAGQGAASLQQSVSVAMTKN------VVRCQHNSTTDQLMEIMTGGRFRH 126
Query: 733 VPVVMEHIPGQRGQLVGLLDR 753
VPV + G+L G++
Sbjct: 127 VPVE------ENGRLAGIISI 141
Score = 41.5 bits (98), Expect = 3e-04
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
VS M V + + + +M + + V+ + L G++++GD+
Sbjct: 95 VSVAMTKNVVRCQHNSTTDQLMEIMT-GGRFRHVPVEENGRLAGIISIGDV 144
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 70.9 bits (174), Expect = 1e-14
Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 17/149 (11%)
Query: 614 NLEVEELKRRVFVSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLL 671
+L+ ++L V + M + V + L AL ++ + ++D L GL+
Sbjct: 5 SLQSDQLLEAT-VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63
Query: 672 TLGDI-EEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGV 730
I + + + ++ V E+ D N ++ ++ G
Sbjct: 64 GTNMIMNSIFGLERIEFEKLDQITVEEVMLTD------IPRLHINDPIMKGFGMVINNGF 117
Query: 731 NQVPVVMEHIPGQRGQLVGLLDRESIILA 759
V V + G+ R ++
Sbjct: 118 --VCVENDE-----QVFEGIFTRRVVLKE 139
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 70.1 bits (172), Expect = 2e-14
Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 17/147 (11%)
Query: 614 NLEVEELKRRVFVSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLL 671
++ +E ++ +FV ++M + V + L AL +++ S ++D L GL+
Sbjct: 6 SIPKDEFQQ-IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLI 64
Query: 672 TLGDI-EEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGV 730
+ I + + + R +++ V ++ D + AL + +
Sbjct: 65 STAMILDGILGLERIEFERLEEMKVEQVMKQD------IPVLKLEDSFAKALEMTIDHPF 118
Query: 731 NQVPVVMEHIPGQRGQLVGLLDRESII 757
+ V E G G+L R +I+
Sbjct: 119 --ICAVNED-----GYFEGILTRRAIL 138
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 68.8 bits (169), Expect = 4e-14
Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Query: 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681
V E M+T+ ++V L + +M + ++VD + +G++T DI +
Sbjct: 2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK-PVGIITERDIVKAI- 59
Query: 682 YAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIP 741
+S + E +A T + + AL LM ++ + +PVV +
Sbjct: 60 ----GKGKSLETKAEEFMTAS------LITIREDSPITGALALMRQFNIRHLPVVDDK-- 107
Query: 742 GQRGQLVGLL 751
G L G++
Sbjct: 108 ---GNLKGII 114
Score = 43.0 bits (102), Expect = 4e-05
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
E M +T+ + + AL LM +VD+ L G++++ DI
Sbjct: 69 AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDI 119
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 69.3 bits (170), Expect = 5e-14
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 617 VEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+ + + V ++M T+L T L +A LM A IVD + L+G+++ D+
Sbjct: 1 MSLMIK---VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDL 57
Query: 677 ----EEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQ 732
E + + S + + + E+ D + P L + I M ++ +
Sbjct: 58 LAAQESSLQRSAQGDSLAFETPLFEVMHTD------VTSVAPQAGLKESAIYMQKHKIGC 111
Query: 733 VPVVMEHIPGQRGQLVGLLDRESII 757
+PVV + LVG++ +
Sbjct: 112 LPVVAK------DVLVGIITDSDFV 130
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 67.5 bits (166), Expect = 9e-14
Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V +++ +T ++EA +++ + IVD L+G++T DI +
Sbjct: 3 VKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA---- 58
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
K + E+ + + TA + + I M +Y ++ VPVV ++
Sbjct: 59 ----QNKKTIEEIMTRN------VITAHEDEPVDHVAIKMSKYNISGVPVVDDY-----R 103
Query: 746 QLVGLLDRESII 757
++VG++ E I
Sbjct: 104 RVVGIVTSEDIS 115
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 68.1 bits (166), Expect = 2e-13
Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 8/139 (5%)
Query: 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN--DNILIGLLTLGDIEEFS 680
V V M T+ T L E + ++ + + +V++ IL+G++ + +
Sbjct: 12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQAL 71
Query: 681 KYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHI 740
+ + + + ++ + T V T L A L + + V
Sbjct: 72 QAEPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVT---- 127
Query: 741 PGQRGQLVGLLDRESIILA 759
RG+ VG + + A
Sbjct: 128 --SRGRAVGCVSWVEMKKA 144
Score = 32.7 bits (74), Expect = 0.22
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 616 EVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGD 675
+ L+ + +T+ T L +A L V + +G ++ +
Sbjct: 82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSL-FVTSRGRAVGCVSWVE 140
Query: 676 I 676
+
Sbjct: 141 M 141
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 69.8 bits (171), Expect = 3e-13
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 14/132 (10%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
++ +++ V L +A LML ++VD+ +G+LT+GDI + A
Sbjct: 62 LAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII---RRYFA 118
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
K+ + K + + L +AL + +PVV G
Sbjct: 119 KSEKYKGVEIEPYYQRY------VSIVWEGTPLKAALKALLLSNSMALPVVDSE-----G 167
Query: 746 QLVGLLDRESII 757
LVG++D ++
Sbjct: 168 NLVGIVDETDLL 179
Score = 59.4 bits (144), Expect = 9e-10
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 21/126 (16%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V +M VT+ + AL L K +V+ + L+G++++ I Q
Sbjct: 3 VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQL 62
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
+ + N L A LM Y +V VV G
Sbjct: 63 AMLVKRDVP----------------VVKENDTLKKAAKLMLEYDYRRVVVVDSK-----G 101
Query: 746 QLVGLL 751
+ VG+L
Sbjct: 102 KPVGIL 107
Score = 51.7 bits (124), Expect = 3e-07
Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 25/170 (14%)
Query: 610 IDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIG 669
I E + V + + V T L AL +L +VD++ L+G
Sbjct: 112 IIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVG 171
Query: 670 LLTLGDI------EEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPC------------- 710
++ D+ K + S ++ ++ + E +
Sbjct: 172 IVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDV 231
Query: 711 -TATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759
ATP+M + + M +Y + Q+PV+ G L+GL+ ++
Sbjct: 232 IVATPHMTVHEVALKMAKYSIEQLPVIRGE-----GDLIGLIRDFDLLKV 276
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 66.5 bits (163), Expect = 4e-13
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 19/136 (13%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDN--ILIGLLTLGDIEEFSKYA 683
SE+++ V++ T + E T + + A++ DN + +++ DI A
Sbjct: 7 TSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDI----LRA 62
Query: 684 QAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQ 743
A+ + ++ P T + A M R+ + V VV +
Sbjct: 63 VAQ-RLDLDGPAMPIANS-------PITVLDTDPVHVAAEKMRRHNIRHVVVVNK----- 109
Query: 744 RGQLVGLLDRESIILA 759
G+LVG+L +
Sbjct: 110 NGELVGVLSIRDLCFE 125
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 67.1 bits (164), Expect = 5e-13
Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 36/157 (22%)
Query: 626 VSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI------- 676
V + M R V +T + +AL L++ +K + ++D++ L+G+++ D+
Sbjct: 6 VGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSIS 65
Query: 677 ----------------EEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLS 720
+ Q S++ +V ++ + P + NL
Sbjct: 66 GRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPS------PLVVRDSTNLED 119
Query: 721 ALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESII 757
A L+ ++PVV G+L+G+L R +++
Sbjct: 120 AARLLLETKFRRLPVVDAD-----GKLIGILTRGNVV 151
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 65.3 bits (160), Expect = 8e-13
Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
++ + + + MTT +I+ + ++ + S I+D + LI + D+ +
Sbjct: 13 LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL---GLIKG 69
Query: 686 KTSRSKKLLVSE-MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQR 744
L V E + + V T T N L + + + + V++ VV +
Sbjct: 70 GIYNDLSLSVGEALMRRSDDFEGVY-TCTKNDKLSTIMDNIRKARVHRFFVVDDV----- 123
Query: 745 GQLVGLL 751
G+LVG+L
Sbjct: 124 GRLVGVL 130
Score = 39.5 bits (93), Expect = 7e-04
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 626 VSEVMRTRY------VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679
V E + R T L + + + +VD+ L+G+LTL DI ++
Sbjct: 79 VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKY 138
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 65.1 bits (159), Expect = 8e-13
Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 17/134 (12%)
Query: 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683
V S + T Y + +A + A +CA ++D + +G++ L + E
Sbjct: 5 VTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGER-YLGMVHLSRLLE----- 58
Query: 684 QAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQ 743
K + K + E + P L LI + + VP+ E
Sbjct: 59 GRKGWPTVKEKLGEELLET------VRSYRPGEQLFDNLISVAAAKCSVVPLADED---- 108
Query: 744 RGQLVGLLDRESII 757
G+ G++ R+ I+
Sbjct: 109 -GRYEGVVSRKRIL 121
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 65.8 bits (161), Expect = 9e-13
Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 19/135 (14%)
Query: 617 VEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
V ++ + TV + +A+ LM + ++VD D+ + G++T D
Sbjct: 9 VAQILK---AKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-IAGIVTERDY 64
Query: 677 EEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVV 736
++ + SK V E+ +A P+ + + LM + + +PV+
Sbjct: 65 ---ARKVVLQERSSKATRVEEIMTAK------VRYVEPSQSTDECMALMTEHRMRHLPVL 115
Query: 737 MEHIPGQRGQLVGLL 751
G+L+GL+
Sbjct: 116 ------DGGKLIGLI 124
Score = 40.0 bits (94), Expect = 8e-04
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
V E+M + V + E + LM + ++D LIGL+++GD+
Sbjct: 80 VEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGK-LIGLISIGDL 129
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 68.8 bits (168), Expect = 1e-12
Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 8/134 (5%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
+ V TT + AL + + + S +VD ++ + + D+ +
Sbjct: 195 LQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA---E 251
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
KT + + V++ + L + + + V+++ VV EH
Sbjct: 252 KTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEH-----D 306
Query: 746 QLVGLLDRESIILA 759
+ G++ I+ A
Sbjct: 307 VVKGIVSLSDILQA 320
Score = 55.0 bits (132), Expect = 3e-08
Identities = 27/179 (15%), Positives = 63/179 (35%), Gaps = 15/179 (8%)
Query: 585 LSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKR-RVFVSEVMRTRYVTVLMTTLL 643
L+ +D + L S + + LE +++ R + V + L
Sbjct: 85 LTITDFINI-------LHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASL 137
Query: 644 IEALTLMLAEKQSCAMIVDNDN-ILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSAD 702
+A++ ++ K ++D ++ + +LT I +F + + +
Sbjct: 138 FDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF-LKLFITEFPKPEFMSKSLEELQ 196
Query: 703 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761
T + AL + ++ V+ +PVV E G++V + + +I
Sbjct: 197 IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----GRVVDIYSKFDVINLAA 250
Score = 54.6 bits (131), Expect = 5e-08
Identities = 22/146 (15%), Positives = 56/146 (38%), Gaps = 12/146 (8%)
Query: 626 VSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDN-ILIGLLTLGDI----EE 678
+++ T + V + + +A ++ A + D+ +G+LT+ D
Sbjct: 37 CYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHR 96
Query: 679 FSKYAQAKTSRSKKLLVSEMCSADGETCCVP-CTATPNMNLLSALILMDRYGVNQVPVVM 737
+ K A + ++ + + P +PN +L A+ + R ++++PV+
Sbjct: 97 YYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID 156
Query: 738 EHIPGQRGQLVGLLDRESIILACRFC 763
G + +L + I+ +
Sbjct: 157 PE----SGNTLYILTHKRILKFLKLF 178
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 63.4 bits (155), Expect = 3e-12
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 19/131 (14%)
Query: 626 VSEVMRTRY---VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682
V +++ + V + + A+ M A+ +++ ++ L+G+LT D S+
Sbjct: 8 VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEK-LVGILTERDF---SRK 63
Query: 683 AQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPG 742
+ K V E+ + N + L+ V +PV+
Sbjct: 64 SYLLDKPVKDTQVKEIMTRQ------VAYVDLNNTNEDCMALITEMRVRHLPVL------ 111
Query: 743 QRGQLVGLLDR 753
G+++GLL
Sbjct: 112 DDGKVIGLLSI 122
Score = 40.7 bits (96), Expect = 3e-04
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
V E+M + V + + + L+ + ++D+ +IGLL++GD+
Sbjct: 76 VKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGK-VIGLLSIGDL 125
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 63.4 bits (155), Expect = 5e-12
Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 635 VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLL 694
V TT + AL + + + S +VD ++ + + D+ A KT + +
Sbjct: 32 AMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV---INLAAEKTYNNLDVS 88
Query: 695 VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
V++ + L + + + V+++ VV E+ + G++
Sbjct: 89 VTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDEN-----DVVKGIV 140
Score = 42.6 bits (101), Expect = 8e-05
Identities = 9/60 (15%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 626 VSEVMRTRY------VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679
V++ ++ R + + L + ++ + ++VD ++++ G+++L DI +
Sbjct: 89 VTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQA 148
Score = 34.2 bits (79), Expect = 0.054
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
+ AL + ++ V+ +PVV E G++V +
Sbjct: 31 IAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----GRVVDIY 68
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 66.5 bits (162), Expect = 6e-12
Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 9/174 (5%)
Query: 587 SSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYV-TVLMTTLLIE 645
D E L + + E LK + ++ + + MTT +I+
Sbjct: 152 DQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVID 211
Query: 646 ALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGET 705
+ ++ + S I+D + LI + D+ K L V E +
Sbjct: 212 VIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK---GGIYNDLSLSVGEALMRRSDD 268
Query: 706 CCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759
T T N L + + + + V++ VV + G+LVG+L I+
Sbjct: 269 FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV-----GRLVGVLTLSDILKY 317
Score = 54.6 bits (131), Expect = 5e-08
Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 16/144 (11%)
Query: 614 NLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-----NILI 668
L+++ LK V + ++ + L EA ML + ++D D I++
Sbjct: 104 KLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVV 163
Query: 669 GLLTLGDIEEFS-KYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDR 727
+LT I +F + + + + D + ++ + ++ +
Sbjct: 164 SVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDN-----MKSCQMTTPVIDVIQMLTQ 218
Query: 728 YGVNQVPVVMEHIPGQRGQLVGLL 751
V+ VP++ E+ G L+ +
Sbjct: 219 GRVSSVPIIDEN-----GYLINVY 237
Score = 50.0 bits (119), Expect = 1e-06
Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 7/133 (5%)
Query: 635 VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNI-LIGLLTLGDIEEFSKYAQAKTSRSKKL 693
+ + + L+ ++L ++L A + D+ GLLT D +Y + + + +
Sbjct: 43 IVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELV 102
Query: 694 ------LVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQL 747
+ ++ A G + P+ L A + M ++P++ + R +
Sbjct: 103 DKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIV 162
Query: 748 VGLLDRESIILAC 760
V +L + I+
Sbjct: 163 VSVLTQYRILKFV 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 2e-10
Identities = 99/601 (16%), Positives = 172/601 (28%), Gaps = 216/601 (35%)
Query: 142 IRV-VLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVIT 200
+ +LVP FI S QL+ + K P P + A DD
Sbjct: 16 LEHVLLVPTASFFIAS---QLQ----------EQFN----KILPEP-TEGFAADD----E 53
Query: 201 VSSTTSLPTIYYDYL--------KIAFQPLLKAVAACIT---LGTGN------SLGPEGP 243
++ L + Y+ F +L L + L E
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 244 SVEIG-KSIAKG--VGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGC--FFAV----- 293
+ + K + K + +RP K + SA F A G A+
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDK----KSNSAL-----FRAVGEGNAQLVAIFGGQG 164
Query: 294 -------ESVIWPSSAADSSASLA--YTTSMVILSAVIASVVSEV-GLGSEPAFKVPEY- 342
E L Y T V++ +I + L +
Sbjct: 165 NTDDYFEE--------------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 343 ---DFRS----PGELP--LYLLL-GVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVF 392
+ P P YLL + C LI + + Y+ V
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI--QLAHYV----------------VT 252
Query: 393 PVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRA 452
+ G G E R ++KG T LV A +A +
Sbjct: 253 AKLLGFTPG---------------------ELRSYLKGATG-HSQGLVTAVAIAETDSWE 290
Query: 453 SGLVGGYYAPS------LF-IGAATGMAYGKFINFAIAQSNPTIHFSILE----VASPQA 501
S ++ LF IG AY N ++ P+I LE V SP
Sbjct: 291 S-----FFVSVRKAITVLFFIGVRCYEAYP---NTSLP---PSILEDSLENNEGVPSP-- 337
Query: 502 YGLVGMAATLAGVCQVPLTSVLLLF--ELTQDYRIVLPLL-GA------------VGLSS 546
M + ++ + Q + + L ++ + L+ GA GL+
Sbjct: 338 -----MLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 547 WFTSGQMRRRDVKETKVAVHANTNR----KRQFEIYTSRTRGL--SS---SDLLAEEEPY 597
R+ K + +R +R+ + R L +S S LL
Sbjct: 392 TL-----RKA-----KAPSGLDQSRIPFSERKLKFS---NRFLPVASPFHSHLLVP---- 434
Query: 598 AINLCEVESSLCIDDWNLEVEELKRRVFVSE---VMRTRYVTVLMTTLLIEALTLMLAEK 654
A +L + L ++ + ++++ V+ + +R ++ + E + +
Sbjct: 435 ASDL--INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV------LSGSISERIVDCIIRL 486
Query: 655 Q 655
Sbjct: 487 P 487
Score = 44.3 bits (104), Expect = 2e-04
Identities = 47/278 (16%), Positives = 79/278 (28%), Gaps = 102/278 (36%)
Query: 473 AYGKFINFAIAQSNP---TIHFS------ILEVASPQAY--GLVGMAATLAGVCQVPLTS 521
YG F I +NP TIHF I E S + + G T ++ S
Sbjct: 1656 TYG-FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 522 VLLLFE-----L-----TQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAV--H--- 566
F L TQ P L + +++ ++ + + H
Sbjct: 1715 TSYTFRSEKGLLSATQFTQ------PALTLMEKAAF---EDLKSKGLIPADATFAGHSLG 1765
Query: 567 --------ANTNRKRQFE--IYTSRTRGLSSSDLLAEEEP-------YAINLCEVESSLC 609
A+ E + RG++ + +E AIN V +S
Sbjct: 1766 EYAALASLADVM---SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 610 IDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDN---- 665
+ VE + +R T L+E IV N N
Sbjct: 1823 QEALQYVVERVGKR----------------TGWLVE--------------IV-NYNVENQ 1851
Query: 666 -ILIGLLTLGD---IEEFS---KYAQAKTSRSKKLLVS 696
+ GD ++ + + + + +L S
Sbjct: 1852 QYVAA----GDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Score = 30.0 bits (67), Expect = 3.6
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 47 YLSFSNSTKSLRLRPLG-----ALPENERNRKEQPMIIGIDGHEVGNSG 90
+S + + + R G A+P +E R M I I+ V S
Sbjct: 1776 VMSIESLVEVVFYR--GMTMQVAVPRDELGRSNYGM-IAINPGRVAASF 1821
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 58.4 bits (141), Expect = 5e-10
Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 28/162 (17%)
Query: 618 EELKRRVFVSEVMRTRYVTVLMTTL------LIEALTLMLAEKQSCAMIVDNDN--ILIG 669
EE + +VM+ R L+T L + + T++ S +V + L+G
Sbjct: 5 EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVG 64
Query: 670 LLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCV--------------PCTATPN 715
+ D+ + A+ K + P T T
Sbjct: 65 FVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDL 124
Query: 716 MNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESII 757
+ + + + G+ Q V G+L+G++ ++ ++
Sbjct: 125 TPMEIVVDIFRKLGLRQCLVT------HNGRLLGIITKKDVL 160
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 50.6 bits (121), Expect = 8e-07
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 635 VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLL 694
T M T + + + ++ + S IV+++ L+ + D+ Q + L
Sbjct: 196 ATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDV---MHLIQDGDYSNLDLS 252
Query: 695 VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
V E T L + V+++ VV E+ +L G+L
Sbjct: 253 VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDEN-----LKLEGIL 304
Score = 46.8 bits (111), Expect = 1e-05
Identities = 20/142 (14%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-----NILIGLLTLGDIEEFSKYA 683
+ + V L++A M + ++D D +++ +LT I +F
Sbjct: 114 AIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI--- 170
Query: 684 QAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQ 743
+ + +L + T TA+ + + ++ ++ VP+V
Sbjct: 171 -SMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE---- 225
Query: 744 RGQLVGLLDRESIILACRFCDF 765
G L+ + + ++ + D+
Sbjct: 226 -GTLLNVYESVDVMHLIQDGDY 246
Score = 45.6 bits (108), Expect = 4e-05
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 626 VSEVMRTRY------VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679
V E + R T T L + + +VD + L G+L+L DI +
Sbjct: 253 VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNY 312
Query: 680 SKYAQAKT 687
Y + T
Sbjct: 313 IIYDKTTT 320
Score = 44.9 bits (106), Expect = 7e-05
Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 10/133 (7%)
Query: 635 VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNI-LIGLLTLGDIEEFSKYAQAKTSRSKKL 693
+ +T + +L+L+ A + D++ GLLT+ D KY +S + +
Sbjct: 35 IVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAI 94
Query: 694 L---------VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQR 744
+ E+ G P +L+ A + M + ++P++
Sbjct: 95 AEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS 154
Query: 745 GQLVGLLDRESII 757
+V +L + I+
Sbjct: 155 EMIVSVLTQYRIL 167
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS
domain, structural genomics, PSI-2, P structure
initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae
subsp} PDB: 3fna_A*
Length = 149
Score = 47.5 bits (114), Expect = 2e-06
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 18/128 (14%)
Query: 626 VSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683
V+++M T V + L +AL + + I D+D +IG+ T GD+ +
Sbjct: 30 VNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDL----RRV 85
Query: 684 QAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQ 743
+ ++++ + P + AL LM + V V
Sbjct: 86 FDTGVDMRDASIADVMTRG------GIRIRPGTLAVDALNLMQSRHITCVLVA------D 133
Query: 744 RGQLVGLL 751
L+G++
Sbjct: 134 GDHLLGVV 141
Score = 37.5 bits (88), Expect = 0.004
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+++VM + + TL ++AL LM + +C ++ D D+ L+G++ + D+
Sbjct: 97 IADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDH-LLGVVHMHDL 146
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 47.1 bits (113), Expect = 2e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V E+M +TV + + EAL +M+ + +VD L+GL+T+ D+ KY A
Sbjct: 152 VKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKNA 211
Query: 686 KTSRSKKLLV 695
+ +LLV
Sbjct: 212 VRDENGELLV 221
Score = 35.2 bits (82), Expect = 0.088
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
T P+ + AL LM+++G++ +PVV + ++VG++
Sbjct: 103 VITIAPDETVDFALFLMEKHGIDGLPVV------EDEKVVGII 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 2e-05
Identities = 66/518 (12%), Positives = 127/518 (24%), Gaps = 193/518 (37%)
Query: 26 IPSSYQCNKSEPSCFKLKQKKYLS----FSNSTKSL------RLRPLGALPENERNRKEQ 75
+ S + + +PS + + Y+ N + RL+P L + +
Sbjct: 94 LMSPIKTEQRQPS---MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 76 PMIIGIDGHEVGNSGVIISSCLVGLLTGIGVVLFNKGVHEIRDF--FWDGIPYGGASWLR 133
++ IDG V SG + + V + V DF FW +
Sbjct: 151 KNVL-IDG--VLGSG---KTWVALD------VCLSYKVQCKMDFKIFW--LNLK----NC 192
Query: 134 EKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAK 193
P ++ +L +L Y + D + D S +
Sbjct: 193 NSP---------------ETVLEMLQKLLYQI------DPNWTSRSDHSSNIKLRIHSIQ 231
Query: 194 DDISVITVSSTTSLPTIYYDYLKIAFQPLL------KAVAA----CITLGTGNSLGPEGP 243
++ + S Y + L + L KA A C L T
Sbjct: 232 AELRRLLKSKP------YENCLLV-----LLNVQNAKAWNAFNLSCKILLTTRF------ 274
Query: 244 SVEIGKSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAA 303
K + + +SL S +
Sbjct: 275 -----KQVTDFLSAA----TTTHISLD------HHSMTLTPDEVKSLLLK----YLDCRP 315
Query: 304 DSSASLAYTTS-MVILSAVIASVVSEVGLGSEPA----FKVPEYD-----------FRSP 347
TT+ + ++IA + + A +K D P
Sbjct: 316 QDLPREVLTTNPRRL--SIIAESIRD-----GLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 348 GEL-PLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALM 406
E ++ L++ IP +
Sbjct: 369 AEYRKMF-------------------DRLSV---FPPSAHIPTILL-------------- 392
Query: 407 FPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFI 466
++++ D+ +V K+ SL PS+
Sbjct: 393 --SLIWFDVIKSDV-----------------MVVVNKLHKYSLVEKQPKESTISIPSI-- 431
Query: 467 GAATGMAYGKFINFAIAQSN-PTIHFSILE-VASPQAY 502
++ + N +H SI++ P+ +
Sbjct: 432 ----------YLELKVKLENEYALHRSIVDHYNIPKTF 459
Score = 39.8 bits (92), Expect = 0.003
Identities = 64/463 (13%), Positives = 116/463 (25%), Gaps = 153/463 (33%)
Query: 319 SAVIASVVSEVGLGSEPAFKVPEYDF-------RSPGELPLYLLLGVLCGLISLTLSRCT 371
+ V V + + FK+ F SP + L L I + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKI----FWLNLKNCNSPETVLEMLQK--LLYQIDPNWTSRS 217
Query: 372 TYMLAI----------VDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEIL--YWGFENVD 419
+ I + L K L+ +L + +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENC-----------LL------VLLNVQNAKAWN 260
Query: 420 -------ILLESR-------------------PFVKGLTADMLLQLVA--AKIVATSL-- 449
ILL +R LT D + L+ L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 450 --CRASGLVGGYYAPSLFIGAAT--------GMAYGKFINFAIAQSNPTIH------FSI 493
+ A S+ G AT I ++ P + S+
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 494 LE--VASPQAYGLVGMAATLA-----GVCQVP------LTSVLLLFELTQDYRIVLPLLG 540
P L+ + L L+ + ++ I +P +
Sbjct: 381 FPPSAHIP--------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI- 431
Query: 541 AVGLSSWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAE-EEPYAI 599
+ + E + A+H + + Y + + S DL+ + Y
Sbjct: 432 -----------YLELKVKLENEYALH-----RSIVDHY-NIPKTFDSDDLIPPYLDQYFY 474
Query: 600 N-----LCEVESSLCIDDWNLEVEELKRRVFV------SEVMRTRYVTVLMTTLLIEALT 648
+ L +E + E L R VF+ ++ ++L
Sbjct: 475 SHIGHHLKNIE--------HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 649 LMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSK 691
L + I DND L+ I +F + SK
Sbjct: 527 LKFYKPY----ICDNDPKYERLV--NAILDFLPKIEENLICSK 563
Score = 32.1 bits (72), Expect = 0.93
Identities = 32/240 (13%), Positives = 71/240 (29%), Gaps = 62/240 (25%)
Query: 556 RDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCE--VESSLCID-D 612
+DV++ ++ + I S+ + L + + VE L I+
Sbjct: 36 KDVQDMPKSILSKEEID---HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 613 W---NLEVE----ELKRRVFVSEVMRTRYVTVLMTTL------LIEALTLMLAEKQSCAM 659
+ ++ E + R+++ + R + L L E +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP--- 149
Query: 660 IVDNDNILI-GLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVP--------- 709
N+LI G+L G KT + ++C + C +
Sbjct: 150 ---AKNVLIDGVLGSG-----------KTW-----VALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 710 --CTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQ----RGQLVGLLDRES-----IIL 758
+ + +L L+ +I + + +L LL + ++L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 46.0 bits (110), Expect = 3e-05
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 626 VSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683
+SEVM R V L EA ++ K+ IV++ + L+ ++ D+++ Y
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYP 234
Query: 684 QAKTSRSKKLLV 695
A K+LL
Sbjct: 235 LASKDSQKQLLC 246
Score = 33.3 bits (77), Expect = 0.33
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
P +P+ + L R+G + +P+ G +LVG++
Sbjct: 118 PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMG--SKLVGIV 158
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 46.0 bits (110), Expect = 4e-05
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 612 DWNLEVEELKRRVFVSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIG 669
D+ +++ + + +V S++M ++ VT T L EA ++ +K + I+D+D L
Sbjct: 151 DYPIDLTQTETKV--SDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRY 208
Query: 670 LLTLGDIEEFSKYAQAKTSRSKKLLV 695
++ D + K+ LV
Sbjct: 209 IVFRKDYDRSQVCHNELVDSQKRYLV 234
Score = 37.2 bits (87), Expect = 0.018
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
P+ L + R N V V + P G L+GL+
Sbjct: 107 DSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPH--GVLLGLV 147
Score = 28.3 bits (64), Expect = 9.8
Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 27/149 (18%)
Query: 607 SLCIDDWNLEVEELKRRVFVSEV-MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN-- 663
S I+ V +K + V + L + + + D+
Sbjct: 83 SQSIESQAAMVHAVKN----FKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGT 138
Query: 664 -DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE-MCSADGETCCVPCTATPNMNLLSA 721
+L+GL+T D T K VS+ M TA + L A
Sbjct: 139 PHGVLLGLVTQRDYP-IDL-----TQTETK--VSDMMTPFSKLV-----TAHQDTKLSEA 185
Query: 722 LILMDRYGVNQVPVVMEHIPGQRGQLVGL 750
++ +N +P++ + L +
Sbjct: 186 NKIIWEKKLNALPIIDDD-----QHLRYI 209
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 44.0 bits (105), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 626 VSEVM-RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684
+S+VM + + +T + T L EA ++ K +VDN+ +L GL+T+ DIE+ ++
Sbjct: 177 ISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPN 236
Query: 685 AKTSRSKKLLV 695
+ + +LLV
Sbjct: 237 SAKDKQGRLLV 247
Score = 35.6 bits (83), Expect = 0.057
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
P TP + A LM +Y ++ VPVV +LVG++
Sbjct: 123 PFFLTPEHQVYDAEHLMGKYRISGVPVVNN---LDERKLVGII 162
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 44.0 bits (105), Expect = 1e-04
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 626 VSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683
+ ++M R + + L +A ++ + +V DN L+GL+T+ DI ++
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP 216
Query: 684 QAKTSRSKKLLV 695
A +LLV
Sbjct: 217 NAARDEKGRLLV 228
Score = 35.9 bits (84), Expect = 0.049
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
P T TP+M + A+ LM Y + +PVV E G+LVGLL
Sbjct: 105 PITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-----GRLVGLL 142
Score = 32.8 bits (76), Expect = 0.41
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 29/148 (19%)
Query: 608 LCIDDWNLEVEELKRRVFVSEV-MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNI 666
L D+ +V +K+ +E + +TV + EA+ LM K +VD +
Sbjct: 82 LTPDEQARQVSIVKK----TENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGR 137
Query: 667 LIGLLTLGDIEEFSKYAQAKTSR---SKKLLVSEMCSADGETCCVPCTATPNMNLLSALI 723
L+GLLT D+ F K K ++ L+ A P+++L A
Sbjct: 138 LVGLLTNRDV-RFEKNLSKKIKDLMTPREKLI---------------VAPPDISLEKAKE 181
Query: 724 LMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
++ ++ + ++P+V + +LVGL+
Sbjct: 182 ILHQHRIEKLPLVSKD-----NKLVGLI 204
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 44.0 bits (105), Expect = 2e-04
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 626 VSEVM-RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684
+SE M VT + T L A ++ + +VDN L GL+T+ DIE+ ++
Sbjct: 154 ISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPH 213
Query: 685 A 685
A
Sbjct: 214 A 214
Score = 36.3 bits (85), Expect = 0.038
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
P TP + A LM RY ++ VP+V +LVG++
Sbjct: 100 PFFLTPEHKVSEAEELMQRYRISGVPIVET---LANRKLVGII 139
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 43.6 bits (104), Expect = 2e-04
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 626 VSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683
V+ VM + R TV E M + ++V+++ L G++T D +
Sbjct: 151 VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKP 210
Query: 684 QA 685
A
Sbjct: 211 NA 212
Score = 35.5 bits (83), Expect = 0.060
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
P T P + + L +G PVV E+ +LVG++
Sbjct: 99 PVTVRPEQTIADVMELTHYHGFAGFPVVTEN-----NELVGII 136
Score = 30.5 bits (70), Expect = 2.3
Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 29/148 (19%)
Query: 608 LCIDDWNLEVEELKRRVFVSEV-MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNI 666
+ I+ +V ++K E + T VTV + + + L + +V +N
Sbjct: 76 MSIEQQAAQVHQVKI----FEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNE 131
Query: 667 LIGLLTLGDIEEFSKYAQAKTSR---SKKLLVSEMCSADGETCCVPCTATPNMNLLSALI 723
L+G++T D+ F + K+ L T
Sbjct: 132 LVGIITGRDV-RFVTDLTKSVAAVMTPKERLA---------------TVKEGATGAEVQE 175
Query: 724 LMDRYGVNQVPVVMEHIPGQRGQLVGLL 751
M + V ++ VV + QL G++
Sbjct: 176 KMHKARVEKILVVNDE-----FQLKGMI 198
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 42.6 bits (99), Expect = 3e-04
Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 7/135 (5%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V ++ + + L A +M + + D +N L+G+L+ +I + Y
Sbjct: 9 VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNI--TATYMDI 66
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
S + + + + +++ Q + E I G
Sbjct: 67 WDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVV---AAMQAESLKEFI--SEG 121
Query: 746 QLVGLLDRESIILAC 760
+ DR I
Sbjct: 122 DIAIAGDRAEIQAEL 136
Score = 36.4 bits (83), Expect = 0.021
Identities = 13/125 (10%), Positives = 36/125 (28%), Gaps = 1/125 (0%)
Query: 553 MRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDD 612
++ + + + ++ ++E + D
Sbjct: 114 LKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHD 173
Query: 613 WNLEVEELKRRVFVSEVMRT-RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLL 671
+ + + V VM V V L+ + M + S ++D +N ++G +
Sbjct: 174 SFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSI 233
Query: 672 TLGDI 676
+
Sbjct: 234 ARFHL 238
Score = 33.4 bits (75), Expect = 0.21
Identities = 15/123 (12%), Positives = 40/123 (32%), Gaps = 6/123 (4%)
Query: 636 TVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS-KYAQAKTSRSKKLL 694
+ + E ++ K S ++ ++ L + + + +L+
Sbjct: 122 DIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLI 181
Query: 695 VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRE 754
V + T + + + + M + PV+ E+ ++VG + R
Sbjct: 182 VQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDEN-----NKVVGSIARF 236
Query: 755 SII 757
+I
Sbjct: 237 HLI 239
>3fio_A A cystathionine beta-synthase domain protein fused to A
Zn-ribbon-like domain; PF1953,APC40009,cystathionine
beta-synthase domain protein; 1.81A {Pyrococcus
furiosus} PDB: 3ghd_A
Length = 70
Score = 37.9 bits (89), Expect = 7e-04
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 635 VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+ V + ++ K A++++ D ++G++T DI
Sbjct: 3 IVVQPKDTVDRVAKILSRNKAGSAVVMEGDE-ILGVVTERDI 43
Score = 29.1 bits (66), Expect = 0.85
Identities = 5/46 (10%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLL-DR 753
P + ++ R V+ + +++G++ +R
Sbjct: 2 AIVVQPKDTVDRVAKILSRNKAGSAVVM------EGDEILGVVTER 41
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 39.1 bits (92), Expect = 0.005
Identities = 8/64 (12%), Positives = 17/64 (26%)
Query: 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSK 691
+ + + T + + + I L + E + A +
Sbjct: 81 RKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNN 140
Query: 692 KLLV 695
KL V
Sbjct: 141 KLRV 144
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 38.5 bits (90), Expect = 0.008
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 711 TATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759
+ + A+ LM ++ V+Q+PVV G ++G++ +E++I
Sbjct: 397 ILKSDATVGEAIALMKKHRVDQLPVV----DQDDGSVLGVVGQETLITQ 441
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA;
1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A
2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*
Length = 399
Score = 34.5 bits (78), Expect = 0.14
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 255 VGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTS 314
N+ D ++ S + G + SS+ + SL +
Sbjct: 321 QNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSID 380
Query: 315 MVILSAVIASVVSEVGLG 332
+ V ++V+++ G G
Sbjct: 381 AS--ANVKSNVINQAGAG 396
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural GE PSI-2, protein structure
initiative; 2.41A {Shewanella oneidensis mr-1}
Length = 205
Score = 31.4 bits (72), Expect = 0.82
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 24/124 (19%)
Query: 629 VMRTRYVTVLMTTLLIEALTLM---LAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
+ + + + +A + IVD + +G + DI
Sbjct: 59 YTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDI--------F 110
Query: 686 KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRG 745
K + + + S D T N LL A ++ ++PV+ + G
Sbjct: 111 KHEPHEP--LISLLSED------SRALTANTTLLDAAEAIEHSREIELPVIDDA-----G 157
Query: 746 QLVG 749
+L+G
Sbjct: 158 ELIG 161
Score = 31.0 bits (71), Expect = 0.91
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLM-----LAEKQSCAMIVDNDNILIGLLTLGD 675
+ + ++ + T L++A + + ++D+ LIG +TL
Sbjct: 113 EPHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIE-----LPVIDDAGELIGRVTLRA 167
Query: 676 I 676
Sbjct: 168 A 168
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 31.8 bits (73), Expect = 0.89
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 15/71 (21%)
Query: 626 VSEVM-RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684
V+EV+ +++ EK + D Y+
Sbjct: 81 VNEVLKVKNWISN--------------LEKNESTPDQNLDKESTDGKDTKSNNNIDAYSN 126
Query: 685 AKTSRSKKLLV 695
+L V
Sbjct: 127 ENLDNKGRLRV 137
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 29.4 bits (66), Expect = 4.2
Identities = 7/67 (10%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 148 PACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSL 207
+ + +L+ +R + ++++ +YP P Q + + L
Sbjct: 311 NSVEVALNKLLDPIREKF-----NTPALKKLASAAYPDPSKQKPMAKGPAKNSEPEEVIL 365
Query: 208 PTIYYDY 214
++ +
Sbjct: 366 EHHHHHH 372
>3dns_A Ribosomal-protein-alanine acetyltransferase; N-terminal domain of
ribosomal-protein-alanine acetyltransfe MCSG, PSI; 2.10A
{Clostridium acetobutylicum}
Length = 135
Score = 28.4 bits (63), Expect = 4.4
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 659 MIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKK 692
+I D I IG + + D+ + +++ + K+
Sbjct: 23 LITDKYGITIGRIFIVDLNKDNRFCMFRMKIYKQ 56
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 6.7
Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 16/77 (20%)
Query: 236 NSLGPEGPSVEIG------KSIAKGVGNLFDRRPRRK---VSLVAAGSAAGISS------ 280
+ G ++ + F P + +A ++
Sbjct: 1037 KYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSS 1096
Query: 281 GFNAAVAG-CFFAVESV 296
G G C +VESV
Sbjct: 1097 GPIKTPVGACATSVESV 1113
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 28.9 bits (65), Expect = 7.7
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 374 MLAIVDNLQKDNG--IPKAVFPVMGGLAV 400
M I +N Q + G IP + P M G+ +
Sbjct: 438 MCCICENYQTEEGVVIPDVLRPYMMGIEM 466
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 28.4 bits (64), Expect = 8.9
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 26/126 (20%)
Query: 629 VMRTRYVTVLMTTLLIEALTLM-----LAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683
+M T +V+++ + A+ ++ +AE +VD +N L+G+++L D+
Sbjct: 142 IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDL------- 194
Query: 684 QAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQ 743
+ L+ + + + + + Y VPV
Sbjct: 195 --IVNDDDTLIADIL-----NERVI--SVHVGDDQEDVAQTIRDYDFLAVPVTDYD---- 241
Query: 744 RGQLVG 749
L+G
Sbjct: 242 -DHLLG 246
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.4 bits (64), Expect = 9.4
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 374 MLAIVDNLQKDNG--IPKAVFPVMGGLAV 400
+ I++N QK++G IP+ + + G
Sbjct: 412 ICCILENYQKEDGLVIPEVLRKYIPGEPE 440
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein;
2.30A {Thermus thermophilus} PDB: 2yvz_A
Length = 278
Score = 28.3 bits (64), Expect = 9.5
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 629 VMRTRYVTVLMTTLLIEALTLM-----LAEKQSCAMIVDNDNILIGLLTLGDI 676
+M YV V + E L + AE +VD L G+L+L D+
Sbjct: 140 LMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDL 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.407
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,522,147
Number of extensions: 714656
Number of successful extensions: 1461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1312
Number of HSP's successfully gapped: 125
Length of query: 767
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 666
Effective length of database: 3,881,772
Effective search space: 2585260152
Effective search space used: 2585260152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.1 bits)