Query 004221
Match_columns 767
No_of_seqs 349 out of 2147
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 19:38:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1932 TATA binding protein a 100.0 2E-114 3E-119 970.1 51.7 715 1-766 3-751 (1180)
2 KOG1046 Puromycin-sensitive am 100.0 2.2E-83 4.8E-88 760.6 42.2 586 13-720 29-634 (882)
3 PRK14015 pepN aminopeptidase N 100.0 4.1E-77 8.9E-82 700.3 59.1 561 13-701 13-609 (875)
4 TIGR02412 pepN_strep_liv amino 100.0 4.7E-78 1E-82 716.8 50.5 564 16-716 11-596 (831)
5 TIGR02414 pepN_proteo aminopep 100.0 3E-75 6.5E-80 682.4 57.1 558 15-701 3-599 (863)
6 TIGR02411 leuko_A4_hydro leuko 100.0 1.2E-68 2.6E-73 611.7 41.3 436 14-519 5-453 (601)
7 COG0308 PepN Aminopeptidase N 100.0 5.3E-68 1.2E-72 629.9 47.7 463 24-574 25-509 (859)
8 PF01433 Peptidase_M1: Peptida 100.0 7.8E-61 1.7E-65 531.2 24.3 371 15-442 2-390 (390)
9 KOG1047 Bifunctional leukotrie 100.0 6.1E-53 1.3E-57 445.0 28.7 442 1-518 1-461 (613)
10 PF13485 Peptidase_MA_2: Pepti 99.0 4.4E-10 9.6E-15 103.5 4.1 102 346-465 26-128 (128)
11 COG3975 Predicted protease wit 98.6 1.4E-06 3E-11 94.4 16.4 225 277-516 182-434 (558)
12 PF13646 HEAT_2: HEAT repeats; 95.5 0.057 1.2E-06 45.6 7.5 71 659-737 3-73 (88)
13 PF11838 ERAP1_C: ERAP1-like C 95.5 0.027 5.9E-07 60.6 6.6 79 638-719 1-87 (324)
14 PF07607 DUF1570: Protein of u 95.2 0.015 3.2E-07 53.0 2.9 38 347-385 3-43 (128)
15 PF10460 Peptidase_M30: Peptid 94.9 0.2 4.4E-06 53.8 10.9 137 346-509 140-285 (366)
16 PF05299 Peptidase_M61: M61 gl 94.7 0.013 2.8E-07 52.8 1.2 41 347-387 6-57 (122)
17 KOG1932 TATA binding protein a 92.9 0.11 2.4E-06 61.8 4.8 95 438-538 449-554 (1180)
18 PF04450 BSP: Peptidase of pla 90.7 0.58 1.3E-05 46.5 6.3 109 344-504 95-204 (205)
19 PRK09687 putative lyase; Provi 85.8 2.4 5.2E-05 44.6 7.5 50 666-721 202-251 (280)
20 PF13646 HEAT_2: HEAT repeats; 83.8 3.1 6.6E-05 34.8 6.0 55 658-716 34-88 (88)
21 PF10026 DUF2268: Predicted Zn 80.6 6.5 0.00014 38.9 7.8 40 346-385 66-109 (195)
22 PF10023 DUF2265: Predicted am 80.0 2.3 5.1E-05 45.1 4.6 38 345-388 165-202 (337)
23 PF11940 DUF3458: Domain of un 79.8 22 0.00047 38.9 12.1 65 638-702 68-146 (367)
24 PF02985 HEAT: HEAT repeat; I 77.3 3.5 7.7E-05 27.2 3.3 25 693-719 4-28 (31)
25 PF03130 HEAT_PBS: PBS lyase H 71.7 5.1 0.00011 25.6 2.8 26 707-736 1-26 (27)
26 COG4324 Predicted aminopeptida 71.1 4.8 0.0001 40.6 3.8 36 346-387 198-233 (376)
27 PRK09687 putative lyase; Provi 70.5 13 0.00028 39.1 7.3 66 665-736 168-233 (280)
28 PF13513 HEAT_EZ: HEAT-like re 70.4 13 0.00028 28.0 5.4 28 689-718 28-55 (55)
29 smart00567 EZ_HEAT E-Z type HE 69.5 2.9 6.3E-05 27.3 1.4 27 705-735 1-27 (30)
30 PF03272 Enhancin: Viral enhan 68.7 75 0.0016 38.4 13.8 119 265-385 144-276 (775)
31 PRK13800 putative oxidoreducta 66.9 10 0.00022 47.0 6.4 69 661-736 780-848 (897)
32 KOG0567 HEAT repeat-containing 66.3 10 0.00022 38.8 5.0 60 661-723 193-252 (289)
33 PF12315 DUF3633: Protein of u 65.9 13 0.00029 36.6 5.6 41 346-388 94-134 (212)
34 PF13699 DUF4157: Domain of un 65.2 7.6 0.00016 32.2 3.3 67 288-357 6-73 (79)
35 PRK04860 hypothetical protein; 62.9 19 0.0004 34.4 6.0 68 282-358 6-76 (160)
36 smart00731 SprT SprT homologue 56.7 18 0.00039 33.9 4.7 65 287-359 5-73 (146)
37 PRK13800 putative oxidoreducta 56.1 19 0.00041 44.7 6.1 51 665-719 816-866 (897)
38 PF01863 DUF45: Protein of unk 48.7 36 0.00078 33.7 5.8 67 280-360 109-179 (205)
39 PF06114 DUF955: Domain of unk 41.8 26 0.00057 30.8 3.2 18 345-362 42-59 (122)
40 PF01447 Peptidase_M4: Thermol 40.6 1.2E+02 0.0025 28.7 7.4 74 275-356 66-146 (150)
41 COG1413 FOG: HEAT repeat [Ener 38.5 87 0.0019 33.6 7.2 59 658-721 46-104 (335)
42 PF01435 Peptidase_M48: Peptid 35.7 46 0.00099 33.3 4.3 20 345-364 89-108 (226)
43 PHA02456 zinc metallopeptidase 32.7 29 0.00064 30.2 1.8 12 346-357 80-91 (141)
44 COG3227 LasB Zinc metalloprote 31.0 1.4E+02 0.003 33.4 7.0 103 272-384 265-377 (507)
45 KOG2259 Uncharacterized conser 30.6 28 0.00061 40.1 1.8 45 690-736 374-420 (823)
46 PRK03982 heat shock protein Ht 29.9 90 0.0019 32.9 5.4 16 345-360 125-140 (288)
47 PF12725 DUF3810: Protein of u 29.6 28 0.00061 37.3 1.5 29 347-387 198-226 (318)
48 PF13574 Reprolysin_2: Metallo 28.6 33 0.00071 33.2 1.7 12 346-357 112-123 (173)
49 COG1413 FOG: HEAT repeat [Ener 28.2 1.2E+02 0.0025 32.6 6.1 75 647-723 97-181 (335)
50 PRK01345 heat shock protein Ht 27.5 94 0.002 33.3 5.1 67 285-360 69-139 (317)
51 PRK04351 hypothetical protein; 27.4 94 0.002 29.3 4.4 12 345-356 61-72 (149)
52 PRK03001 M48 family peptidase; 27.0 1.1E+02 0.0023 32.2 5.4 16 344-359 123-138 (283)
53 COG4783 Putative Zn-dependent 25.3 58 0.0012 36.4 2.9 53 301-357 90-142 (484)
54 PF10263 SprT-like: SprT-like 25.0 53 0.0012 30.9 2.4 17 344-360 59-75 (157)
55 PF07571 DUF1546: Protein of u 24.9 80 0.0017 27.0 3.2 42 703-744 18-61 (92)
56 PF08325 WLM: WLM domain; Int 22.1 54 0.0012 32.1 1.8 16 346-361 83-98 (186)
57 COG2856 Predicted Zn peptidase 21.4 1.7E+02 0.0037 29.3 5.2 40 346-385 73-117 (213)
58 COG1451 Predicted metal-depend 21.2 1.6E+02 0.0035 29.8 5.0 67 280-360 120-190 (223)
59 KOG4535 HEAT and armadillo rep 20.5 30 0.00064 38.4 -0.4 58 690-759 574-635 (728)
60 KOG0567 HEAT repeat-containing 20.3 1.3E+02 0.0029 30.9 4.2 70 660-735 40-109 (289)
No 1
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=1.5e-114 Score=970.08 Aligned_cols=715 Identities=38% Similarity=0.627 Sum_probs=558.9
Q ss_pred CCCCCCCCC----CCCCCCCCCeEEEEEEEEEE-EeccCcEEEEEEEEEEEc--CCcceEEEeccCceeeEEEEcCeeee
Q 004221 1 MAKPRKPKN----EETKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE 73 (767)
Q Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~i~i~~--~~~~~I~L~~~~l~I~~v~v~g~~~~ 73 (767)
|++.|++++ ++..++++...++||++.|+ ||+.++++.|.++|+|.+ +++..|.|||++|.|.+|.|+|....
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 445455444 44556777778999999999 999999999999999984 67999999999999999999999899
Q ss_pred eeeCCCCcccchhhhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcC
Q 004221 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (767)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~ 153 (767)
|.|+++...... +..|..+. .+........-.|... ..+.++|.|.++++.... +.+ ..
T Consensus 83 f~y~d~~q~~~~-~~~~~~~l-~~~s~~~~~~~~y~~l--~~~~g~L~I~ipk~~~~~--~ee---------------~~ 141 (1180)
T KOG1932|consen 83 FIYNDPTQNDCT-DEIWQRVL-DPASQSHFLAVQYEDL--DEDNGELLIKIPKESKKV--GEE---------------LK 141 (1180)
T ss_pred eeecchhhhhhh-hhhhhhhh-hhhhhhhhHHHhhhcc--ccCCCeEEEEcCchhhhh--hhh---------------cc
Confidence 999987443331 11122111 1101111111122221 123578999876542111 110 01
Q ss_pred ceEEEEEEEEecCCcceEEEcc---------eEeccCcc--CCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccc
Q 004221 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (767)
Q Consensus 154 ~~~~~~~y~~~~~~~G~~f~~~---------~~~T~~ep--~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~ 222 (767)
...++|+|.+.+|..|++|++. .++|.+.+ .+||+||||+|+++.+|||+|++++|++++++|+|++.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 2346789999999999999764 24454433 368999999999999999999999999999999999999
Q ss_pred eeeccCCCCceEEEEecCCCccceeeEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 004221 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (767)
Q Consensus 223 ~~~~~~~~~~~~~~f~~t~p~s~yliafavg~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~ 302 (767)
++.++ |-.+++++|+.+.|+++..||||||+|+.+.......++.||.|+..+.+++++-...++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 98876 67899999999999999999999999999977778899999999999999999999999999999999988999
Q ss_pred CCccEEEECCCCcccccccccchhhhccccccCccccchhhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHH
Q 004221 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (767)
Q Consensus 303 ~k~~~v~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~ 382 (767)
+.|++||||..+.-- ...++|.++++++||+.+++|+.+.++..+|..||.||||.++||..|+|.||.+|+|.|+..
T Consensus 301 ~~~k~VFvd~~~~~i--~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAVEI--SSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCccee--eecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 999999998644322 223368999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCchHHHHHHHHhcccceeccc-CCCcccCCCCccccCCCCcccccccceeeehHHHHHHHHHHhh----CHHH
Q 004221 383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF 457 (767)
Q Consensus 383 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~l----G~e~ 457 (767)
+|+++++|+|+|||+.++..++++..+. .++..+.. |++++. .| -.|+++.+|.+.+.+ |.-.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~ 446 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG 446 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence 9999999999999999999998888776 44444431 111110 01 134444444444333 2222
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHhcCCCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEeecc
Q 004221 458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (767)
Q Consensus 458 F~~~L~~yl~~~~~~~-~~~~~st~~f~~~~~~~~~~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~ 536 (767)
....++..+...+.++ .+...+.+.|.++++.++. ..++.||+.|++..|+|.+.+...||++++.|++.+.|...
T Consensus 447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~ 523 (1180)
T KOG1932|consen 447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR 523 (1180)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence 2333333333333332 1112344455555555542 12689999999999999999999999999999999999655
Q ss_pred CCCCCCCc-cc------cCCCCCCCCCCC---CCcceeeEEEEeccCCcccccccccCCCcceeEeeeecccchhhhhcC
Q 004221 537 VKPDSRTP-VL------SSNTDSENRDGD---IGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK 606 (767)
Q Consensus 537 ~~~~~~~~-~~------~~~~~~~~~~~~---~~~~~plti~~~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~~ 606 (767)
+....... .+ ++......++.+ ..|+||||||+||.||+|+|++ +|. +.|+++||+||+| +|.+|
T Consensus 524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi~-~~~~k~dI~chsK---~R~~k 598 (1180)
T KOG1932|consen 524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QID-GDFTKLDIQCHSK---SRRQK 598 (1180)
T ss_pred hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Eec-Ccccccceeeccc---ccccC
Confidence 43322211 11 010111111222 4599999999999999999986 344 5599999999999 45567
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCeeEEEecCCCceeEEEeecCchHHHHHHHcccCChHHHHHHHHHHHcCCCC
Q 004221 607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 686 (767)
Q Consensus 607 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir~d~~~~~~~~v~~~~~~~~~~~qL~~d~dv~aq~~a~~~l~~~~~~ 686 (767)
+||.+..+|+|++.| ++.+| .++|++|||+|||++|||.++++||++||++||++||||+||+|||++|...|..
T Consensus 599 kKk~~l~sgEE~e~d-l~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~ 673 (1180)
T KOG1932|consen 599 KKKVPLMSGEEIEMD-LTNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST 673 (1180)
T ss_pred CcCCCCCChhhhccc-ccccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence 778788888887766 55554 3789999999999999999999999999999999999999999999999998754
Q ss_pred chhHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChhHHHHhhcccC
Q 004221 687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEVIAL 766 (767)
Q Consensus 687 s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~~i~~ 766 (767)
..+++|.|+|.|++||||||++||.+|+++++++.+|.|.+||+++|+++||+.+++|||||||+||+.||||||||.
T Consensus 674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~ 751 (1180)
T KOG1932|consen 674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV 751 (1180)
T ss_pred --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence 566999999999999999999999999999999999999999999999999999999999999999999999999995
No 2
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-83 Score=760.62 Aligned_cols=586 Identities=18% Similarity=0.253 Sum_probs=448.8
Q ss_pred CCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhcc
Q 004221 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWR 91 (767)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~-~~~~~I~L~~~~l~I~~v~v~g~~~~~~~~~~~~~~~~~~~~~~ 91 (767)
.+....+.|+||+|.|.+++....|.|.+.|.+.+ .+++.|+||+.++.|.++.+......-.-... ..
T Consensus 29 ~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~---~~------- 98 (882)
T KOG1046|consen 29 YRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLE---VS------- 98 (882)
T ss_pred ccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccccc---cc-------
Confidence 35678999999999999999999999999999998 46899999999999999987432111000000 00
Q ss_pred ccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcCc-eEEEEEEEEecCCcce
Q 004221 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNV-KLVRIDYWVEKVEVGI 170 (767)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~-~~~~~~y~~~~~~~G~ 170 (767)
.........+.+.+.. .+..+. .+++ .+.|.|.+++.. |+|+..|...++ +
T Consensus 99 -------------------~~~~~~~~~l~~~~~~---~l~~~~-~y~L--~i~f~g~l~~~~~G~y~s~y~~~~~--~- 150 (882)
T KOG1046|consen 99 -------------------VEEKEQEETLVFPLNE---TLLAGS-SYTL--TIEFTGKLNDSSEGFYRSSYTDSEG--S- 150 (882)
T ss_pred -------------------ccccccceEEEEEccc---ccccCC-eEEE--EEEEeEeecCCcceeeeecccCCCC--c-
Confidence 0000000124443322 222221 1333 478899998875 999999976433 2
Q ss_pred EEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEecCCCccceeeEE
Q 004221 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (767)
Q Consensus 171 ~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliaf 250 (767)
.++++.|||||++||++|||||||++||+|.|+|.+|++++++|||+.+++... ++++++.+|+.|++||+|++||
T Consensus 151 --~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~~--~~~~~~~~F~~Tp~MstYLvAf 226 (882)
T KOG1046|consen 151 --EKSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEPV--DDGWKTTTFEKTPKMSTYLVAF 226 (882)
T ss_pred --eEEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCcccccccc--cCCeeEEEEEecCCCchhhhee
Confidence 157899999999999999999999999999999999999999999999877653 4459999999999999999999
Q ss_pred EEeeceEeecCCC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhh
Q 004221 251 AVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (767)
Q Consensus 251 avg~f~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~gagl~~~ 328 (767)
+||+|+..+.... +.+++|++|+...+..++++.+.++|+||+++||++||++|+|+|+||++..|+|||| ||++|
T Consensus 227 ~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENw--GLvty 304 (882)
T KOG1046|consen 227 AVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENW--GLVTY 304 (882)
T ss_pred eeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcC--cceee
Confidence 9999999877654 7899999999999999999999999999999999999999999999999999999999 79999
Q ss_pred -ccccccCccccchhhh--HHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHHHhcccc
Q 004221 329 -SSQILYDEKVIDQAID--TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAV 405 (767)
Q Consensus 329 -~~~lL~~~~~~~~~~~--~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~ 405 (767)
+..+|+++.......+ ...+||||||||||||+|||+||+|+|||||||+||+++.++..++..... +.+
T Consensus 305 re~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~-------~~~ 377 (882)
T KOG1046|consen 305 RETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIW-------EQF 377 (882)
T ss_pred eehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhH-------HHH
Confidence 6789999976544433 345999999999999999999999999999999999999999887765431 111
Q ss_pred eecccCCCcccCCCCccccC-----CCCcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCCCCH
Q 004221 406 CKADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLST 480 (767)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~~~~~~st 480 (767)
+......++..++..+++|+ .+.++.++|+.++|.||++|||||+..+|++.|++||+.||.+|+++| +++
T Consensus 378 ~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~n----a~~ 453 (882)
T KOG1046|consen 378 LLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSN----AKT 453 (882)
T ss_pred HHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCC----CCc
Confidence 11111122333333333443 234556789999999999999999999999999999999999999997 466
Q ss_pred HHHHHHHHHhcCCCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCC
Q 004221 481 KEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIG 560 (767)
Q Consensus 481 ~~f~~~~~~~~~~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (767)
+|+++.++.. .+.|++.+|+.|+.|+|||+++|..+++ .+.++|.++..... + .+....
T Consensus 454 ~DLw~~l~~~---~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----~~~l~Q~rf~~~~~----------~----~~~~~~ 512 (882)
T KOG1046|consen 454 EDLWDALEEG---SGLDVSELMDTWTKQMGYPVVTVERNGD----SLTLTQERFLSDPD----------P----SEDNYL 512 (882)
T ss_pred hhHHHHHhcc---CCCCHHHHHhhhhcCCCCceEEEEecCC----EEEEehhhhccCCC----------c----cccCcc
Confidence 7766666622 2569999999999999999999998754 67777776643211 1 133568
Q ss_pred cceeeEEEEeccCCcccccccccCCCcceeEeeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCeeEEE
Q 004221 561 WPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIR 640 (767)
Q Consensus 561 ~~~plti~~~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir 640 (767)
|++|+++...... .+. -.| ++...++ + ..+.+.+||+
T Consensus 513 w~iPl~~~~~~~~-~~~--------~~~--~~~~~~~-------------------------~-------~l~~~~~wi~ 549 (882)
T KOG1046|consen 513 WWIPLTYTTSGSG-SVP--------KFW--LSSKSTT-------------------------I-------KLPESDQWIK 549 (882)
T ss_pred cceeEEEEcCCCC-ccc--------eee--ecCCCcc-------------------------e-------ecCCCCeEEE
Confidence 9999999765321 110 011 1100000 0 0112338999
Q ss_pred ecCCCceeEEEeecCchHHH---HHHHcc-----cCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHH
Q 004221 641 ADPEMEYLAEIHFNQPVQMW---INQLEK-----DGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAA 712 (767)
Q Consensus 641 ~d~~~~~~~~v~~~~~~~~~---~~qL~~-----d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa 712 (767)
+|+++.++||| +|++.+| +.||.. ..|...-+.++.+|+..+..+...+..|+..+.++ ..|.++..|+
T Consensus 550 ~N~~~~g~yRV--~Yd~~~w~~l~~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e-~~~~p~~~~~ 626 (882)
T KOG1046|consen 550 VNLEQTGYYRV--NYDDENWALLIEQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNE-TDYVPWSAAI 626 (882)
T ss_pred EeCCcceEEEE--EeCHHHHHHHHHHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcc-cccchHHHHH
Confidence 99999999999 6777777 567744 23444456888999998888888888899999998 5889999988
Q ss_pred HHHHhhcc
Q 004221 713 YALANTAS 720 (767)
Q Consensus 713 ~~L~~~~~ 720 (767)
.+|..+..
T Consensus 627 ~~l~~~~~ 634 (882)
T KOG1046|consen 627 RSLYKLHS 634 (882)
T ss_pred HHHHHHhh
Confidence 88887765
No 3
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=4.1e-77 Score=700.32 Aligned_cols=561 Identities=16% Similarity=0.215 Sum_probs=422.7
Q ss_pred CCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc--CCcceEEEeccCceeeEEEEcCeee---eeeeCCCCcccchhh
Q 004221 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPT---EFEYYPHNHQNVENE 87 (767)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~--~~~~~I~L~~~~l~I~~v~v~g~~~---~~~~~~~~~~~~~~~ 87 (767)
.+..+++.+.||+|+|+++++...++|+++|+..+ .+++.|.||+++|+|++|.+||+++ .|.+.+.
T Consensus 13 dy~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~~~~~~~~~~~~-------- 84 (875)
T PRK14015 13 DYRPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQPLAPSAYELDEE-------- 84 (875)
T ss_pred ccCCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEEcCccceEEcCC--------
Confidence 35678899999999999999999999999999775 4578999999999999999999877 5554421
Q ss_pred hhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCc---CceEEEEEEEEe
Q 004221 88 KRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ---NVKLVRIDYWVE 164 (767)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~---~~~~~~~~y~~~ 164 (767)
.|.|... +. .++++ +.|++.+.. ..|+|++
T Consensus 85 -------------------------------~L~I~~l------~~---~~~l~--I~y~~~P~~n~~l~Gly~s----- 117 (875)
T PRK14015 85 -------------------------------GLTIENL------PD---RFTLE--IETEIDPEANTALEGLYRS----- 117 (875)
T ss_pred -------------------------------EEEEecC------Cc---cEEEE--EEEEEecCCCCCceeeEEE-----
Confidence 3566411 10 12333 445544432 1255442
Q ss_pred cCCcceEEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeC-Ce-EEEEeCcccceeeccCCCCceEEEEecCCC
Q 004221 165 KVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQ-NL-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVP 242 (767)
Q Consensus 165 ~~~~G~~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~-~~-~aisng~l~~~~~~~~~~~~~~~~f~~t~p 242 (767)
..+++|||||++||+||||+|+|+.||+|+++|++|+ .| +++|||+++++.. ..+++++++|+.++|
T Consensus 118 ---------~~~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~--~~~g~~~~~w~~~~P 186 (875)
T PRK14015 118 ---------GGMFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGE--LPDGRHWATWEDPFP 186 (875)
T ss_pred ---------CCEEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCcccccee--ccCCeEEEEEEeCCC
Confidence 2367999999999999999999999999999999999 48 6899999987653 246789999999999
Q ss_pred ccceeeEEEEeeceEeecC------CCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcc
Q 004221 243 VSAKWITLAVAPFEVLPDH------HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAV 316 (767)
Q Consensus 243 ~s~yliafavg~f~~~~~~------~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~ 316 (767)
||+|+++|+||+|+++++. .+.++++|++|+..+.+.++++.++++|+|||++||.||||++|++|++|++..+
T Consensus 187 mpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~G 266 (875)
T PRK14015 187 KPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMG 266 (875)
T ss_pred cccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCc
Confidence 9999999999999998743 1367899999999999999999999999999999999999999999999988788
Q ss_pred cccccccchhhhc-cccccCcccc-chhh-hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchH
Q 004221 317 SSSTFGAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNE 393 (767)
Q Consensus 317 ~~~~~gagl~~~~-~~lL~~~~~~-~~~~-~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~ 393 (767)
+|||+ ||++|. ..+|.++... +... ....+|+||+|||||||+|||+||+|+|||||||+|++.++.+...+...
T Consensus 267 aMEN~--Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~ 344 (875)
T PRK14015 267 AMENK--GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAV 344 (875)
T ss_pred ccccc--cccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHH
Confidence 99999 688994 5577776543 2222 23458999999999999999999999999999999999888777654332
Q ss_pred HHHHHHHhcccceecccCCCcccCCCCccccCCC---CcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhc
Q 004221 394 ARYRRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQ 470 (767)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~ 470 (767)
.++........ ..+..++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++|+
T Consensus 345 ~~~~~~~~l~~-------~~~~~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~ 417 (875)
T PRK14015 345 KRIEDVRVLRA-------AQFAEDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHD 417 (875)
T ss_pred HHHHHHHHHhh-------hcccccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 21111111100 0111121122233322 2445688999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEeeccCCCCCCCccccCCC
Q 004221 471 GASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNT 550 (767)
Q Consensus 471 ~~~~~~~~st~~f~~~~~~~~~~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~ 550 (767)
+++ ++++||++.+++++| .|+.+|+ +|++++|+|+++|+.+|+..++.++++++|.+....
T Consensus 418 ~~~----at~~Df~~ale~asg---~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~----------- 478 (875)
T PRK14015 418 GQA----VTCEDFVAAMEDASG---RDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTP----------- 478 (875)
T ss_pred CCC----CCHHHHHHHHHHHhC---CCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCC-----------
Confidence 986 799999999998874 5899986 899999999999999998777788899998753211
Q ss_pred CCCCCCCCCCcceeeEEEEeccCCcccccccccCCCc-ceeEeeeecccchhhhhcCCCCCCCCCCCCCCCCcccccccc
Q 004221 551 DSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMR 629 (767)
Q Consensus 551 ~~~~~~~~~~~~~plti~~~e~dg~~~~~~~~~~~~~-~~~~~i~~~~k~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~ 629 (767)
+ ......|.+|++|.+...+|.-.. +...++. -..+++.... + . + ..+
T Consensus 479 ~---~~~~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~l~l~~~~-------q---~-------------f-~f~-- 527 (875)
T PRK14015 479 G---QPEKQPLHIPVAIGLLDPDGKELP--LQLEGEPVERVLELTEAE-------Q---T-------------F-TFE-- 527 (875)
T ss_pred C---CCCCceEEEEEEEEEEcCCCceee--ccccCCccceEEEEcCCe-------e---E-------------E-EEc--
Confidence 0 012347999999998877675210 0011110 0011211000 0 0 0 000
Q ss_pred ccC-CCCeeEEEecCCCceeEEEeecCchHHHHHHHcccCChHHHHHHHHHHHcC------------CCCchhHhhHHHH
Q 004221 630 SSM-ESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL------------PHLSFNVVNTLNN 696 (767)
Q Consensus 630 ~~~-~~~~~wir~d~~~~~~~~v~~~~~~~~~~~qL~~d~dv~aq~~a~~~l~~~------------~~~s~~~~~~L~~ 696 (767)
.. +.|+ +.+|.++.-..++.++++++.+..|+++|.|..++.+|++.|++. ...+...+.++..
T Consensus 528 -~~~~~p~--~s~~r~fsapv~~~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (875)
T PRK14015 528 -NVAERPV--PSLLRGFSAPVKLEYDYSDEDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRA 604 (875)
T ss_pred -CCCCCce--EEecCCCCCcEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 01 2344 799999999999999999999999999999999999999988743 0124456666777
Q ss_pred hhccC
Q 004221 697 FLSDS 701 (767)
Q Consensus 697 ~l~~~ 701 (767)
+|.|+
T Consensus 605 ~l~~~ 609 (875)
T PRK14015 605 VLLDE 609 (875)
T ss_pred HhcCC
Confidence 77664
No 4
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=4.7e-78 Score=716.82 Aligned_cols=564 Identities=13% Similarity=0.126 Sum_probs=404.7
Q ss_pred CCCeEEEEEEEEEEEeccCcE--EEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCe-eeeeeeCCCCcccchhhhhcc
Q 004221 16 NSGAVVRHQKLCLSIDMEKHQ--IYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE-PTEFEYYPHNHQNVENEKRWR 91 (767)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~--~~G~v~i~i~~-~~~~~I~L~~~~l~I~~v~v~g~-~~~~~~~~~~~~~~~~~~~~~ 91 (767)
...+++.||+|.|+++.+... +.|+++|++.+ .+++.|.||+.+++|++|++||+ ++.+.+++
T Consensus 11 ~~~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~~~~~~~~~~------------- 77 (831)
T TIGR02412 11 ASLITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGILDVAPVYDG------------- 77 (831)
T ss_pred HHhccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCcccCccccCC-------------
Confidence 356889999999999866554 48888888886 46889999999999999999996 33322221
Q ss_pred ccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcC-ceEEEEEEEEecCCcce
Q 004221 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVGI 170 (767)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~-~~~~~~~y~~~~~~~G~ 170 (767)
..|.++. ++.| ..+++ +.|.|..... .|+++ | . .+.+|
T Consensus 78 ----------------------------~~i~l~~----l~~g--~~~l~--i~~~~~~~~~~~Gl~~--~-~-~~~~g- 116 (831)
T TIGR02412 78 ----------------------------SRIPLPG----LLTG--ENTLR--VEATRAYTNTGEGLHR--F-V-DPVDG- 116 (831)
T ss_pred ----------------------------CEEEccC----CCCC--ceEEE--EEEEEEecCCCceEEE--E-E-eCCCC-
Confidence 1222211 2111 12222 3444443332 37776 2 2 23455
Q ss_pred EEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEecCCCccceeeEE
Q 004221 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (767)
Q Consensus 171 ~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliaf 250 (767)
..+++|||||.+||+||||||+|++||+|+|+|++|++|+|+|||++.+... .+++++++|..++|||+|+++|
T Consensus 117 ---~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~~---~~~~~~~~F~~t~pmstYL~a~ 190 (831)
T TIGR02412 117 ---EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVTP---EPADRRWEFPETPKLSTYLTAV 190 (831)
T ss_pred ---eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCccccccc---cCCCeEEEecCCCCcccceEEE
Confidence 4678999999999999999999999999999999999999999999876542 3467889999999999999999
Q ss_pred EEeeceEeecCC-CCcEEEEEcCCchhH--HHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhh
Q 004221 251 AVAPFEVLPDHH-QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGI 327 (767)
Q Consensus 251 avg~f~~~~~~~-~~~v~~~~~p~~~~~--~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~gagl~~ 327 (767)
+||+|+.++... +.++++|++|+..+. .+++++.++++|+|||++||+||||+||++|++|++..++|||| |+++
T Consensus 191 ~vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~--Glit 268 (831)
T TIGR02412 191 AAGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENA--GCVT 268 (831)
T ss_pred EEeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCccccc--ceee
Confidence 999999987543 568999999997664 56899999999999999999999999999999998878899999 6899
Q ss_pred hccccccCccccchhh-hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHHHhcccce
Q 004221 328 FSSQILYDEKVIDQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (767)
Q Consensus 328 ~~~~lL~~~~~~~~~~-~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~ 406 (767)
|.+.+|+++....... ....+|+||||||||||+|||+||+|+|||||||+||+++++++..+.... +.....
T Consensus 269 ~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~-~~~f~~----- 342 (831)
T TIGR02412 269 FAENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDA-WTTFAA----- 342 (831)
T ss_pred echhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchH-HHHHHH-----
Confidence 9766776654432222 233589999999999999999999999999999999999999988765432 111100
Q ss_pred ecccCCCcccCCCCccccC----C-CCcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 004221 407 KADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (767)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~----~-~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~ 481 (767)
.....++..++.++.+|+ . +.++...|+.++|.||++|||||+..||++.|+++|+.|+++|+++| ++++
T Consensus 343 -~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~n----at~~ 417 (831)
T TIGR02412 343 -QGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGN----ATLD 417 (831)
T ss_pred -HHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCC----CCHH
Confidence 000011111222222333 1 23445679999999999999999999999999999999999999997 6999
Q ss_pred HHHHHHHHhcCCCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEE-EEEEeeccCCCCCCCccccCCCCCCCCCCCCC
Q 004221 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVE-LAVLRDCTVKPDSRTPVLSSNTDSENRDGDIG 560 (767)
Q Consensus 482 ~f~~~~~~~~~~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~-l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (767)
||++.++++++ .|+++||++|++++|+|+++|+..++. +.+. +.+.|. .....
T Consensus 418 Dl~~~l~~~sg---~dl~~~~~~W~~~~G~P~l~v~~~~~~--~~~~~~~~~~~---------------------~~~~~ 471 (831)
T TIGR02412 418 DLIDSLAKASG---RDLSAWSDAWLETAGVNTLTPEITTDG--GVVSALYPESS---------------------GPPRP 471 (831)
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHcCCCCceEEEEEEECC--CeEEEEEEecC---------------------CCCCC
Confidence 99999998874 689999999999999999999988754 3333 222210 00135
Q ss_pred cceeeEEEEeccCCcccccccccCCCcceeEeeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCeeEEE
Q 004221 561 WPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIR 640 (767)
Q Consensus 561 ~~~plti~~~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir 640 (767)
|++|+++... .++... ...+ .++.+.+. +.. ... + .......||.
T Consensus 472 ~~ip~~~~~~-~~~~~~-------~~~~--~~~~~~~~----~~~----~~~----------~-------~~~~~~~~v~ 516 (831)
T TIGR02412 472 HRIAIGLYDL-DRDDLR-------RTTL--VPLTISGE----RTA----VPQ----------L-------VGKRAPALVL 516 (831)
T ss_pred eeEEEeeeec-CCCcce-------eeeE--EEEEEecC----cee----ehh----------h-------cCCCCCCEEE
Confidence 7788876322 111110 0011 12222111 000 000 0 0012347999
Q ss_pred ecCCCceeEEEeecCchHHH---HHHHcccCChH---HHHHHHHHHHcCCCCchhHhhH-HHHhhccCcchhHHHHHHHH
Q 004221 641 ADPEMEYLAEIHFNQPVQMW---INQLEKDGDVV---AQAQAIAALEALPHLSFNVVNT-LNNFLSDSKAFWRVRIEAAY 713 (767)
Q Consensus 641 ~d~~~~~~~~v~~~~~~~~~---~~qL~~d~dv~---aq~~a~~~l~~~~~~s~~~~~~-L~~~l~~~~~f~~vr~~Aa~ 713 (767)
+|.+..++||| ++++.+| +.+|....+.+ .-+.++.+|++.+..+...... +.+.|.+| .-|-|+..+..
T Consensus 517 ~N~~~~gyyrv--~yd~~~~~~l~~~l~~~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E-~~~~v~~~~~~ 593 (831)
T TIGR02412 517 LNDDDLTYAKV--RLDPTSFDTVLAALSKLPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSE-TDYAVVQQVLS 593 (831)
T ss_pred EeCCCcEEEEE--ECCHHHHHHHHHHhhhCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCC-CchHHHHHHHH
Confidence 99999999999 5666665 45564443443 4458888999887777655444 55788877 57778888877
Q ss_pred HHH
Q 004221 714 ALA 716 (767)
Q Consensus 714 ~L~ 716 (767)
.|.
T Consensus 594 ~l~ 596 (831)
T TIGR02412 594 QLL 596 (831)
T ss_pred HHH
Confidence 777
No 5
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=3e-75 Score=682.39 Aligned_cols=558 Identities=16% Similarity=0.200 Sum_probs=418.2
Q ss_pred CCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcC-CcceEEEeccCceeeEEEEcCeeee---eeeCCCCcccchhhhhc
Q 004221 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE---FEYYPHNHQNVENEKRW 90 (767)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~~-~~~~I~L~~~~l~I~~v~v~g~~~~---~~~~~~~~~~~~~~~~~ 90 (767)
..+++.+.||+|+|+++++...++|.++|++.+. +.+.|.||+++|+|.+|++||+.+. |.+.+
T Consensus 3 ~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~~~~~~~~~~~------------ 70 (863)
T TIGR02414 3 KPPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKPLAAGDYQLDD------------ 70 (863)
T ss_pred CCCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEecCcceEEEcC------------
Confidence 3578999999999999999999999999998863 5678999999999999999997643 33221
Q ss_pred cccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCC--c-CceEEEEEEEEecCC
Q 004221 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPK--Q-NVKLVRIDYWVEKVE 167 (767)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~--~-~~~~~~~~y~~~~~~ 167 (767)
..|+|... + +.++++ +.|.+.+. . ..|+|+
T Consensus 71 ---------------------------~~L~I~~~------~---~~~~l~--i~~~~~p~~n~~l~GlY~--------- 103 (863)
T TIGR02414 71 ---------------------------ETLTIASV------P---ESFTLE--IETEIHPEENTSLEGLYK--------- 103 (863)
T ss_pred ---------------------------CEEEEeeC------C---ccEEEE--EEEEeecccCCCCeEEEE---------
Confidence 12555321 1 112333 33333222 1 124444
Q ss_pred cceEEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCC-e-EEEEeCcccceeeccCCCCceEEEEecCCCccc
Q 004221 168 VGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (767)
Q Consensus 168 ~G~~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~-~-~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~ 245 (767)
.+.+++|||||++||++|||+|+|+.||+|+++|++|++ | +++|||+++.... ..+++++++|+.++|||+
T Consensus 104 -----s~~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~--~~~g~~~~~f~~t~pmpt 176 (863)
T TIGR02414 104 -----SGGNFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGE--LPDGRHWAEWEDPFPKPS 176 (863)
T ss_pred -----eCCeEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCcccccee--cCCCeEEEEEeCCCCcCh
Confidence 344689999999999999999999999999999999996 6 6789999876543 246788999999999999
Q ss_pred eeeEEEEeeceEeecC------CCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCccccc
Q 004221 246 KWITLAVAPFEVLPDH------HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSS 319 (767)
Q Consensus 246 yliafavg~f~~~~~~------~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~ 319 (767)
|++||+||+|++++.. .++++++|++|+..+.+.++++.++++|+|||++||.||||+||++|+||++..++||
T Consensus 177 YLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaME 256 (863)
T TIGR02414 177 YLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAME 256 (863)
T ss_pred hHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCcccc
Confidence 9999999999998753 1357899999999999999999999999999999999999999999999988789999
Q ss_pred ccccchhhh-ccccccCcccc-chhh-hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHH
Q 004221 320 TFGAAMGIF-SSQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARY 396 (767)
Q Consensus 320 ~~gagl~~~-~~~lL~~~~~~-~~~~-~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~ 396 (767)
|| ||++| +..+|.++... +... ....+|+||+|||||||+|||+||+++|||||||+|++.++.....+....++
T Consensus 257 N~--GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~ 334 (863)
T TIGR02414 257 NK--GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRI 334 (863)
T ss_pred cc--ceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHH
Confidence 99 68999 55677777643 2222 23458999999999999999999999999999999999888777655433222
Q ss_pred HHHHhcccceecccCCCcccCCCCccccCCC---CcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q 004221 397 RRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS 473 (767)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~ 473 (767)
......... .+..++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|++||+.|+++|++++
T Consensus 335 ~~~~~lr~~-------~f~~D~~p~~~Pi~~~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~ 407 (863)
T TIGR02414 335 EDVRLLRAH-------QFPEDAGPMAHPVRPESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQA 407 (863)
T ss_pred HHHHHHHhh-------hhcccccccCCCCCCcchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC
Confidence 211111100 111122222333322 2445678999999999999999999999999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEeeccCCCCCCCccccCCCCCC
Q 004221 474 PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSE 553 (767)
Q Consensus 474 ~~~~~st~~f~~~~~~~~~~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~ 553 (767)
++++||++.++++++ .|+.+|+ +|++|+|+|+|+|+.+|+.++..++|+++|.+....
T Consensus 408 ----at~~Df~~ale~asg---~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~-------------- 465 (863)
T TIGR02414 408 ----VTCEDFVAAMEDASG---RDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTP-------------- 465 (863)
T ss_pred ----CCHHHHHHHHHHHhC---CCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCC--------------
Confidence 699999999998874 5899985 899999999999999998777778888888643210
Q ss_pred CCCCCCCcceeeEEEEeccCCcccccccccCCCc--ceeEeeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccc-
Q 004221 554 NRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRS- 630 (767)
Q Consensus 554 ~~~~~~~~~~plti~~~e~dg~~~~~~~~~~~~~--~~~~~i~~~~k~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~- 630 (767)
.......|.+|+.|.....+|.-.- ..+.++. -..+++.... + ...+
T Consensus 466 ~~~~~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~~l~l~~~~-------~---------------------~f~f~ 515 (863)
T TIGR02414 466 GQTEKKPLHIPIAVGLLGPNGRKLM--LSLDGERDTTRVLELTEAE-------Q---------------------TFVFE 515 (863)
T ss_pred CCCcCCceEEEEEEEEEeCCCCEee--ecccCCCCcceEEEEccCE-------E---------------------EEEEc
Confidence 0112347999999999877775110 0001110 0011111000 0 0000
Q ss_pred cC-CCCeeEEEecCCCceeEEEeecCchHHHHHHHcccCChHHHHHHHHHHHcC-----------C---CCchhHhhHHH
Q 004221 631 SM-ESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL-----------P---HLSFNVVNTLN 695 (767)
Q Consensus 631 ~~-~~~~~wir~d~~~~~~~~v~~~~~~~~~~~qL~~d~dv~aq~~a~~~l~~~-----------~---~~s~~~~~~L~ 695 (767)
.. +.|+ +.++.+|.-..++.++++++.+..+|.+|.|..++.+|++.|++. + ..+...+.++.
T Consensus 516 ~~~~~p~--~sl~r~fsapv~l~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (863)
T TIGR02414 516 GIAEKPV--PSLLRGFSAPVNLEYPYSDEDLLLLLAHDSDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALG 593 (863)
T ss_pred CCCCCCe--eeecCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 01 2344 899999999999999999999999999999999999999988732 0 12445666666
Q ss_pred HhhccC
Q 004221 696 NFLSDS 701 (767)
Q Consensus 696 ~~l~~~ 701 (767)
..|.|+
T Consensus 594 ~~l~~~ 599 (863)
T TIGR02414 594 KLLNDP 599 (863)
T ss_pred HHhcCC
Confidence 666654
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=1.2e-68 Score=611.69 Aligned_cols=436 Identities=19% Similarity=0.272 Sum_probs=330.3
Q ss_pred CCC-CCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-C-CcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhc
Q 004221 14 VEN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRW 90 (767)
Q Consensus 14 ~~~-~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~-~-~~~~I~L~~~~l~I~~v~v~g~~~~~~~~~~~~~~~~~~~~~ 90 (767)
.+| ..++|.||+|+|++|+++..|+|+|+|++.+ . .++.|.||+++|+|++|.++|.+++|........
T Consensus 5 ~sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~~~-------- 76 (601)
T TIGR02411 5 LSNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGLPADFAIGERKEP-------- 76 (601)
T ss_pred ccCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCcccceEeccccCC--------
Confidence 444 5699999999999999999999999999987 3 3678999999999999999998877765421000
Q ss_pred cccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcCceEEEEEEEEec-CCcc
Q 004221 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-VEVG 169 (767)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~~~~y~~~~-~~~G 169 (767)
....|.|.++.+ +..+. .++ +.+.|+|.++. .|+ +|... ..+|
T Consensus 77 -------------------------~g~~L~I~l~~~---l~~g~-~~~--l~I~Y~~~~~~-~gl----~~~~~~~t~g 120 (601)
T TIGR02411 77 -------------------------LGSPLTISLPIA---TSKNK-ELV--LNISFSTTPKC-TAL----QWLTPEQTSG 120 (601)
T ss_pred -------------------------CCCeEEEEeCCc---cCCCc-eEE--EEEEEeecCCC-cee----EEecccccCC
Confidence 112478876532 22221 233 34688887643 243 22211 1122
Q ss_pred eEEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEecCCCccceeeE
Q 004221 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (767)
Q Consensus 170 ~~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~ylia 249 (767)
- .+++++|||||.+||+||||+|+|+.||||+++|++| ++|++||.++.+. .++..+++|.+++|||+|++|
T Consensus 121 ~--~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~----~~~~~~~~F~~t~pmptYLia 192 (601)
T TIGR02411 121 K--KHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET----SNDPGKYLFKQKVPIPAYLIA 192 (601)
T ss_pred C--CCCEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc----cCCCceEEEEeCCCcchhhhe
Confidence 1 2578999999999999999999999999999999999 9999888776543 234568899999999999999
Q ss_pred EEEeeceEeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHHcCCCCCCCCccEEEEC-CCCcccccccccchhh
Q 004221 250 LAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGI 327 (767)
Q Consensus 250 favg~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~v~vp-~~~~~~~~~~gagl~~ 327 (767)
|+||+|+..+. +..+++|+.|+..+.+++.+. .++++|+++|+++| ||||+|||+|++| ++..++|||+ |++.
T Consensus 193 ~avG~~~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~--~ltf 267 (601)
T TIGR02411 193 LASGDLASAPI--GPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENP--NLTF 267 (601)
T ss_pred eeeccceeccc--CCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCcccccccccc--ccee
Confidence 99999987653 567899999999988888888 89999999998865 9999999999885 5667899999 4544
Q ss_pred hccccccCccccchhhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHH---Hhccc
Q 004221 328 FSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY---KANCA 404 (767)
Q Consensus 328 ~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~---~~~~~ 404 (767)
.+..+|.+.+ ....+||||||||||||+||++||+|+|||||||+|++.+++++++|+....+... .....
T Consensus 268 ~~~~ll~~d~------s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~ 341 (601)
T TIGR02411 268 ATPTLIAGDR------SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQE 341 (601)
T ss_pred eccccccCCh------hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHH
Confidence 4667775532 12358999999999999999999999999999999999999999999876433221 11111
Q ss_pred ceecccCCCcccCCCCccccCCCCcccccccceeeehHHHHHHHHHHhhC-HHHHHHHHHHHHHHhcCCCCCCCCCHHHH
Q 004221 405 VCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEF 483 (767)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG-~e~F~~~L~~yl~~~~~~~~~~~~st~~f 483 (767)
.+.. .....++... ..++...++...|+.+.|.||+++||||+..|| ++.|+++||.|++++++++ ++++||
T Consensus 342 ~~~~-~~~~~~~~~~--~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s----~~t~df 414 (601)
T TIGR02411 342 SVKT-LGEDPEYTKL--VVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKS----LDTYQF 414 (601)
T ss_pred HHHh-hcCCCCCCcc--cccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCC----CCHHHH
Confidence 0000 0000011100 011212245678999999999999999999999 9999999999999999996 799999
Q ss_pred HHHHHHhc-CC-CcccHHhH-HHhhccCCCceEEEEEEE
Q 004221 484 RHFANKVG-NL-ERPFLKEF-FPRWVGTCGCPVLRMGFS 519 (767)
Q Consensus 484 ~~~~~~~~-~~-~~~dl~~f-~~~W~~~~G~P~l~v~~~ 519 (767)
++.+.+.. +. .+.+++.+ |++|++++|+|.+++.++
T Consensus 415 ~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 415 KDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 98776543 11 12457766 999999999999887643
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-68 Score=629.90 Aligned_cols=463 Identities=22% Similarity=0.307 Sum_probs=356.2
Q ss_pred EEEEEE--EeccCcEEEEEEEEEEEc--C-CcceEEEeccCceeeEEEEcCeeeee--eeCCCCcccchhhhhccccCCC
Q 004221 24 QKLCLS--IDMEKHQIYGYTELEIAV--P-DIGIVGLHAENLGIESVLVDGEPTEF--EYYPHNHQNVENEKRWRSMVSS 96 (767)
Q Consensus 24 y~l~L~--id~~~~~~~G~v~i~i~~--~-~~~~I~L~~~~l~I~~v~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (767)
|++.|+ +++++..|+|.++|++.. . ....|.||+++|+|.+|.|||++... .++..
T Consensus 25 ~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~~~~~~~~----------------- 87 (859)
T COG0308 25 YDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTAWYRLDGD----------------- 87 (859)
T ss_pred cceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccccccccCc-----------------
Confidence 555554 455558999999999975 3 33349999999999999999986442 22211
Q ss_pred CCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCC-c-CceEEEEEEEEecCCcceEEEc
Q 004221 97 PSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPK-Q-NVKLVRIDYWVEKVEVGIHFDG 174 (767)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~-~-~~~~~~~~y~~~~~~~G~~f~~ 174 (767)
.+.|....+. .+ .+....++.+.+.+.+... . -.|+|+..+ .+ .
T Consensus 88 ----------------------~~~i~~~~~~-~~-~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~------~~----~ 133 (859)
T COG0308 88 ----------------------ALTITVAPPI-PE-RSERPFTLAITYEFTGPVSNDTLEGLYRSGY------GG----K 133 (859)
T ss_pred ----------------------cceeeecccc-cc-ccCCCccEEEEEEecccccCccccceeecCC------CC----C
Confidence 1122110000 00 0000112222334444333 1 135554322 11 4
Q ss_pred ceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEecCCCccceeeEEEEee
Q 004221 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (767)
Q Consensus 175 ~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliafavg~ 254 (767)
++++||||+.+||+||||+|+|+.|++|+++|++++++++||||+++.... ..+++++++|..++|||+|++++++|+
T Consensus 134 ~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~--~~~g~~~~~f~~~~~mptYL~al~~G~ 211 (859)
T COG0308 134 PYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGGT--LVDGRKIVKFEDTPPMPTYLFALVAGD 211 (859)
T ss_pred eeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCcccccc--ccCCcEEEEEcCCCCcchHhhheeeec
Confidence 689999999999999999999999999999999999999999999987654 234689999999999999999999999
Q ss_pred ceEeecCC-----CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhh-
Q 004221 255 FEVLPDHH-----QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF- 328 (767)
Q Consensus 255 f~~~~~~~-----~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~gagl~~~- 328 (767)
|+++++.. ..++.+|+.++....++++++.+.++++|||++||++||+++ ++|+||++..++|||| |+++|
T Consensus 212 ~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~--Gl~tf~ 288 (859)
T COG0308 212 LEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENW--GLVTFR 288 (859)
T ss_pred ceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCcccccc--ceeEEe
Confidence 99887765 578999999999999999999999999999999999999999 9999999999999999 67888
Q ss_pred ccccccCccc-cchhhh-HHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHHHhcccce
Q 004221 329 SSQILYDEKV-IDQAID-TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (767)
Q Consensus 329 ~~~lL~~~~~-~~~~~~-~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~ 406 (767)
...+|.+++. .+..+. ...+|+||||||||||+|||+||+|+|||||||+|++.++.+.+.|....++.. +.
T Consensus 289 ~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~------~~ 362 (859)
T COG0308 289 EKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWED------FR 362 (859)
T ss_pred eeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHH------HH
Confidence 4557877543 444332 344999999999999999999999999999999999999999998832222222 21
Q ss_pred ecccCCCcccCCCCccccC-----CCCcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 004221 407 KADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (767)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~-----~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~ 481 (767)
......++..++.+..+|+ .+.++..+||.++|.||++|+|||+.++|++.|++||+.|+++|++++ ++++
T Consensus 363 ~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~----~~~~ 438 (859)
T COG0308 363 TLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGN----ATTM 438 (859)
T ss_pred HHhhhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCC----CCHH
Confidence 1111113333433333443 246778899999999999999999999999999999999999999997 6899
Q ss_pred HHHHHHHHhcCCCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCCc
Q 004221 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (767)
Q Consensus 482 ~f~~~~~~~~~~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (767)
||++.++.++| +|+.++|++|+.++|+|++.|+.+++. .+.|+|+|+.... ......|
T Consensus 439 Dl~~a~~~~sg---~dl~~~~~~w~~q~G~P~l~v~~~~~~---~~~l~~~q~~~~~----------------~~~~~~~ 496 (859)
T COG0308 439 DLWKALEDASG---KDLSAFFESWLSQAGYPVLTVSVRYDD---FFKLTQKQFTPPG----------------QEEKRPW 496 (859)
T ss_pred HHHHHHHHHhC---CcHHHHHHHHHhCCCCCceeeeeeccc---cEEEEEEEeccCC----------------CccCcee
Confidence 99999999984 689999999999999999999998764 6678888875421 0224479
Q ss_pred ceeeEEEEeccCC
Q 004221 562 PGMMSIRVHELDG 574 (767)
Q Consensus 562 ~~plti~~~e~dg 574 (767)
++|+.+...+.+|
T Consensus 497 ~iPl~~~~~~~~~ 509 (859)
T COG0308 497 PIPLAIKLLDGGG 509 (859)
T ss_pred eeccEEEecCCCC
Confidence 9999999887655
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=7.8e-61 Score=531.19 Aligned_cols=371 Identities=23% Similarity=0.339 Sum_probs=282.3
Q ss_pred CCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeee-------eeeCCCCcccchh
Q 004221 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE-------FEYYPHNHQNVEN 86 (767)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~-~~~~~I~L~~~~l~I~~v~v~g~~~~-------~~~~~~~~~~~~~ 86 (767)
....+.|.||+|.|++|++...|+|.|+|++.+ .+++.|.||+.+|+|.+|.++|.... +.++..
T Consensus 2 Lp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~~~~~~~~------- 74 (390)
T PF01433_consen 2 LPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSSPFEYDDE------- 74 (390)
T ss_dssp --TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCEEEEEECC-------
T ss_pred CCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccccccccceeeccc-------
Confidence 356899999999999999999999999999997 57899999999999999999987554 222211
Q ss_pred hhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCc-CceEEEEEEEE-e
Q 004221 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWV-E 164 (767)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~-~~~~~~~~y~~-~ 164 (767)
...|.|.++. .+..|. .++++ +.|+|.++. ..|++++.|.. .
T Consensus 75 ------------------------------~~~l~I~l~~---~l~~g~-~~~L~--I~y~g~~~~~~~G~~~~~y~~~~ 118 (390)
T PF01433_consen 75 ------------------------------NEKLTITLPK---PLPPGS-NYTLR--IEYSGKISDDSSGLYRSSYTDQT 118 (390)
T ss_dssp ------------------------------BTEEEEEEEE---ECSTTE-EEEEE--EEEEEECBSSSSEEEEEEEE-GT
T ss_pred ------------------------------cceeehhhhh---hcccCc-EEEEE--EEEeecccccccccccceeeccc
Confidence 1236776643 232222 14444 789998776 45999998876 2
Q ss_pred cCCcceEEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEecCCCcc
Q 004221 165 KVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVS 244 (767)
Q Consensus 165 ~~~~G~~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s 244 (767)
++. ..++++|++||.+||+||||+|+|++||+|+++|++|++++|+|||++++.... ++++++++|..++|||
T Consensus 119 ~~~-----~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~--~~~~~~~~f~~t~p~~ 191 (390)
T PF01433_consen 119 NGN-----TRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESN--DDGWKTTTFETTPPMP 191 (390)
T ss_dssp SSS-----ETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEE--TTTEEEEEEEEEEEEE
T ss_pred ccc-----cCCceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccc--cccceeEeeecccccC
Confidence 221 367899999999999999999999999999999999999999999999887754 3579999999999999
Q ss_pred ceeeEEEEeeceEeecCCC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccc
Q 004221 245 AKWITLAVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFG 322 (767)
Q Consensus 245 ~yliafavg~f~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~g 322 (767)
+|++||+||+|..++.... .++++|++|+..+.++++++.+.+++++|+++||++||++|+++|++|++..++|+++
T Consensus 192 ~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~- 270 (390)
T PF01433_consen 192 TYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENW- 270 (390)
T ss_dssp GGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--T-
T ss_pred chhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEecccccccccc-
Confidence 9999999999999876553 5899999999999999999999999999999999999999999999998777899999
Q ss_pred cchhhh-ccccccCccccchh--hhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHH-
Q 004221 323 AAMGIF-SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR- 398 (767)
Q Consensus 323 agl~~~-~~~lL~~~~~~~~~--~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~- 398 (767)
|++++ ++.++++++..... .....+||||+|||||||+||++||+|+||+||||+|++.+++++.+|...+....
T Consensus 271 -g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~ 349 (390)
T PF01433_consen 271 -GLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFL 349 (390)
T ss_dssp -TEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHH
T ss_pred -ccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhh
Confidence 57777 56788887654432 23355899999999999999999999999999999999999999999955432111
Q ss_pred HHhcccceeccc-CCCcccCCCCccccC-CCCcccccccceeeehH
Q 004221 399 YKANCAVCKADD-SGATALSSSASCKDL-YGTQCIGIFGKIRSCKS 442 (767)
Q Consensus 399 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~~f~~i~Y~Kg 442 (767)
.......+..|. ....++. .++ .+.++...|+.+.|.||
T Consensus 350 ~~~~~~~~~~d~~~~~~pl~-----~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 350 VQEMQRALREDALPNSHPLS-----SEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHHHHHHHHHTSTTCCCSS-----SSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHhhcCCCcceE-----eCCCCCCChHHhcCccccCCC
Confidence 111111111121 1111221 112 23566778999999998
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-53 Score=444.99 Aligned_cols=442 Identities=19% Similarity=0.260 Sum_probs=325.3
Q ss_pred CCCCCCCCCCCCC-CCC-CCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeeeeeeC
Q 004221 1 MAKPRKPKNEETK-VEN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77 (767)
Q Consensus 1 ~~~~~~~~~~~~~-~~~-~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~-~~~~~I~L~~~~l~I~~v~v~g~~~~~~~~ 77 (767)
||-+| +|. .+| ..+.+.|+.|++.+|++...++|+|.+++.+ .+...|.||.++|.|.+|++||.+.+|...
T Consensus 1 m~~~~-----Dp~s~sn~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~ 75 (613)
T KOG1047|consen 1 MAPRR-----DPSSASNYRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIG 75 (613)
T ss_pred CCCCC-----CcccccChhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCCCccC
Confidence 66666 443 233 6688999999999999999999999999996 344459999999999999999988777644
Q ss_pred CCCcccchhhhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcCceEE
Q 004221 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLV 157 (767)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~ 157 (767)
.. +.. ....+.+.++- +..+. ++.. .+
T Consensus 76 ~~-~~~--------------------------------~g~~~~~~l~~--~~~~a-~~~~-----------------~l 102 (613)
T KOG1047|consen 76 FR-QPF--------------------------------LGSGQKLVLPA--PSSKA-GERL-----------------QL 102 (613)
T ss_pred cc-cCC--------------------------------CCCceEEEecc--ccccc-cCce-----------------EE
Confidence 21 000 00112222211 11111 1111 22
Q ss_pred EEEEEEecCCcceEE---------EcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccC
Q 004221 158 RIDYWVEKVEVGIHF---------DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKD 228 (767)
Q Consensus 158 ~~~y~~~~~~~G~~f---------~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~ 228 (767)
.|.|.....-.|+++ +.+|++||||...||..|||+|.|+.|.||+..|.+|.++++++++...++.. .
T Consensus 103 ~i~y~Ts~~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~~--~ 180 (613)
T KOG1047|consen 103 LIWYETSPSATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEKP--G 180 (613)
T ss_pred EEEEeccCCcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccCC--C
Confidence 233332222223332 24799999999999999999999999999999999999999999998755542 3
Q ss_pred CCCceEEEEecCCCccceeeEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHHcCCCCCCCCccE
Q 004221 229 DPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQ 307 (767)
Q Consensus 229 ~~~~~~~~f~~t~p~s~yliafavg~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~ 307 (767)
..++.++.|.+..|+|+|++||++|+.+..+. +..-+||+.|...+.+++.+. .+.++|.--|+.+| ||+|.+||+
T Consensus 181 ~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI--gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDl 257 (613)
T KOG1047|consen 181 SNGRAIFRFKQEVPIPSYLIAIAVGDLESREI--GPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDL 257 (613)
T ss_pred CCCcceEEEEeccCchhhhHHHhhcccccccc--CCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceE
Confidence 45688999999999999999999999876554 556899999999999988887 89999999999999 999999999
Q ss_pred EEECC-CCcccccccccchhhhccccccCccccchhhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHH
Q 004221 308 VFLAP-EMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIK 386 (767)
Q Consensus 308 v~vp~-~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~ 386 (767)
+++|+ +..++|||. .|+.....||-..+. ...+|||||||-||||+||..+|.+.||||||++|++..++.
T Consensus 258 lvlPpSFP~gGMENP--cltF~TpTllaGDrs------l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g 329 (613)
T KOG1047|consen 258 LVLPPSFPFGGMENP--CLTFVTPTLLAGDRS------LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVG 329 (613)
T ss_pred EEecCCCCcccccCc--ceeeecchhhcCCcc------hhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhh
Confidence 99985 556788887 343336777765442 245899999999999999999999999999999999999999
Q ss_pred HhhCchHHHHHHHHhcccceec-ccCCCcccCCCCccccCCCCcccccccceeeehHHHHHHHHHHhhC-HHHHHHHHHH
Q 004221 387 KFLGNNEARYRRYKANCAVCKA-DDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQN 464 (767)
Q Consensus 387 ~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG-~e~F~~~L~~ 464 (767)
.++|.....+.....+...-.. +..+. .........++.+.+++..|+.+-|.||..+|+.|++.+| .+.|...||.
T Consensus 330 ~~~g~~~~~f~a~~gw~~L~~~~d~~g~-~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~ 408 (613)
T KOG1047|consen 330 RLYGEAYRQFEALIGWRELRPSMDLFGE-TSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRA 408 (613)
T ss_pred hhcchhHHHHHHhcChhhhhhHHHhcCC-CcccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHH
Confidence 9999886544432222211000 00010 0000011122333456678999999999999999999999 5788999999
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHH-hcCCCccc-HHh-HHHhhccCCCceEEEEEE
Q 004221 465 IISRAQGASPVRTLSTKEFRHFANK-VGNLERPF-LKE-FFPRWVGTCGCPVLRMGF 518 (767)
Q Consensus 465 yl~~~~~~~~~~~~st~~f~~~~~~-~~~~~~~d-l~~-f~~~W~~~~G~P~l~v~~ 518 (767)
|++++++++ +.+++|...+-+ ..+....+ +.. -|+.|++++|.|...-.+
T Consensus 409 Yv~kfa~ks----I~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~~ 461 (613)
T KOG1047|consen 409 YVHKFAFKS----ILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPNF 461 (613)
T ss_pred HHHHhccce----ecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCCc
Confidence 999999985 899999876543 43321122 222 489999999999865543
No 10
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.96 E-value=4.4e-10 Score=103.48 Aligned_cols=102 Identities=21% Similarity=0.342 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHHHhcccceecccCCCcccCCCCccccC
Q 004221 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDL 425 (767)
Q Consensus 346 ~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (767)
..+++||++|+|+++.+........|++||+|+|++...-. .. ..... ..+... ...++ .++
T Consensus 26 ~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~~------~~-~~~~~---~~~~~~--~~~~~------~~l 87 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIED------EF-DEDLK---QAIESG--SLPPL------EPL 87 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCccc------hh-HHHHH---HHHHcC--CCCCh------HHH
Confidence 46899999999999999877788899999999999833110 00 11110 000000 01111 111
Q ss_pred CC-CcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHH
Q 004221 426 YG-TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNI 465 (767)
Q Consensus 426 ~~-~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~y 465 (767)
.. ......+....|.+|.+++++|....|++.|.+.|+.|
T Consensus 88 ~~~~~~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 88 NSSFDFSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred hccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 00123445568999999999999999999999999875
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.58 E-value=1.4e-06 Score=94.36 Aligned_cols=225 Identities=14% Similarity=0.148 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhh-ccccccCcccc-chh-hhH-HHHHHHH
Q 004221 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVI-DQA-IDT-SIKLSFA 352 (767)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~-~~~-~~~-~~~iaHE 352 (767)
..+...+.++++++-=-+.|| +-||.+|.+++--. -..++||.-. ++.|.++.... ++. +.. ..+++||
T Consensus 182 d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s------~q~~GGlEH~~St~l~~~r~~~~~~~ky~~~l~llsHE 254 (558)
T COG3975 182 DKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLS------DQIYGGLEHRRSTALIYDRFGFTDQDKYQDLLGLLSHE 254 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEec------CCCCCCceeccccccccccccccchhHHHHHHHHHHHH
Confidence 444555666677776677888 68999987765321 1222366666 45566555322 221 222 4589999
Q ss_pred HHHHhhccccCCCC-----------CCchHHHHHHHHHHHHHHHHHh--hCchHHHHHHHHhcccceecccCCCcccCCC
Q 004221 353 LARQWFGVYITPEL-----------PNDEWLLDGLAGFLTDSFIKKF--LGNNEARYRRYKANCAVCKADDSGATALSSS 419 (767)
Q Consensus 353 lAHQWfG~lVt~~~-----------w~d~WL~EGfA~y~~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (767)
..|-|-+-.+-|.. -.-+|+.|||+.|...++..+. ...+.+.-..-+.+..+........+++..
T Consensus 255 yfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laE- 333 (558)
T COG3975 255 YFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAE- 333 (558)
T ss_pred HHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceecccccc-
Confidence 99999886666543 2458999999999988776432 111222101111122221111100111111
Q ss_pred Ccccc----CCCCccccccccee--eehHHHHHHHHHHhh-----CHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 004221 420 ASCKD----LYGTQCIGIFGKIR--SCKSVAILQMLEKQM-----GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFAN 488 (767)
Q Consensus 420 ~~~~~----~~~~~~~~~f~~i~--Y~Kg~~vl~mL~~~l-----G~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~ 488 (767)
++.+ .+..+.. .-..+. |+||++|--+|+..| |...+..+|+.+.+.+... ++.++.++++.+++
T Consensus 334 -sS~~awik~yr~d~n-s~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~--~~~~t~e~v~av~~ 409 (558)
T COG3975 334 -SSFDAWIKYYRPDEN-SPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRA--ERGYTPEDVQAVLE 409 (558)
T ss_pred -cccchhHHhhccccc-ccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcC--ccCCCHHHHHHHHH
Confidence 0100 0111000 011222 899999988888777 4667899999999888763 35689999999999
Q ss_pred HhcCCCcccHHhHHHhhccCCCceEEEE
Q 004221 489 KVGNLERPFLKEFFPRWVGTCGCPVLRM 516 (767)
Q Consensus 489 ~~~~~~~~dl~~f~~~W~~~~G~P~l~v 516 (767)
.+.| .|+..||++.+++.--|.+.-
T Consensus 410 ~~tg---~dl~~f~~~~i~~~~~~~l~~ 434 (558)
T COG3975 410 NVTG---LDLATFFDEYIEGTEPPPLNP 434 (558)
T ss_pred hhcc---ccHHHHHHHHhhcCCCCChhh
Confidence 9875 589999999999988776654
No 12
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.50 E-value=0.057 Score=45.62 Aligned_cols=71 Identities=27% Similarity=0.277 Sum_probs=57.4
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 004221 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (767)
Q Consensus 659 ~~~~qL~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f~~ 737 (767)
.++..|.+++|..-|..|+..|++.+ +..+...|.+.+.| ..+.||.+|+.+|+++.++ ..+..|.+++++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~i~~~----~~~~~L~~~l~~ 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DPEAIPALIELLKD--EDPMVRRAAARALGRIGDP----EAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HHHHHHHHHHHHTS--SSHHHHHHHHHHHHCCHHH----HTHHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH----HHHHHHHHHHcC
Confidence 45678888999999999999999764 56778899999976 4789999999999998753 256777776653
No 13
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=95.45 E-value=0.027 Score=60.64 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=61.5
Q ss_pred EEEecCCCceeEEEeecCchHHH---HHHHcccC----ChHHHHHHHHHHHcCCCCchhHhhHHHHhh-ccCcchhHHHH
Q 004221 638 WIRADPEMEYLAEIHFNQPVQMW---INQLEKDG----DVVAQAQAIAALEALPHLSFNVVNTLNNFL-SDSKAFWRVRI 709 (767)
Q Consensus 638 wir~d~~~~~~~~v~~~~~~~~~---~~qL~~d~----dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l-~~~~~f~~vr~ 709 (767)
||.+|++..++|||+| ++.+| +.+|+.++ |..+-+.++.+|++.+..+......|...+ .+| .-|.|+.
T Consensus 1 wi~~N~~~~GyyRV~Y--d~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E-~~~~vw~ 77 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNY--DEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNE-TDYVVWS 77 (324)
T ss_dssp EEEESGGGSSSSEEEE--CTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT---SHHHHH
T ss_pred CEEEeCCceEEEEEeC--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCC-CchHHHH
Confidence 9999999999999965 44454 67886554 444556899999999888888888888888 776 4589999
Q ss_pred HHHHHHHhhc
Q 004221 710 EAAYALANTA 719 (767)
Q Consensus 710 ~Aa~~L~~~~ 719 (767)
.++..|..+.
T Consensus 78 ~~~~~l~~l~ 87 (324)
T PF11838_consen 78 TALSNLSSLR 87 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998776
No 14
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.20 E-value=0.015 Score=52.96 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhccccCC---CCCCchHHHHHHHHHHHHHHH
Q 004221 347 IKLSFALARQWFGVYITP---ELPNDEWLLDGLAGFLTDSFI 385 (767)
Q Consensus 347 ~~iaHElAHQWfG~lVt~---~~w~d~WL~EGfA~y~~~~~~ 385 (767)
.+++||-+||=.-|.=-. ..| =.||.||||+|+|..-+
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~-P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADW-PRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCC-chHHHHhHHHHcCCCcc
Confidence 369999999987664222 222 27999999999986544
No 15
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=94.92 E-value=0.2 Score=53.79 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHh--hccccCCC--CCCchHHHHHHHHHHHHHHHHHhhC-ch---HHHHHHHHhcccceecccCCCcccC
Q 004221 346 SIKLSFALARQW--FGVYITPE--LPNDEWLLDGLAGFLTDSFIKKFLG-NN---EARYRRYKANCAVCKADDSGATALS 417 (767)
Q Consensus 346 ~~~iaHElAHQW--fG~lVt~~--~w~d~WL~EGfA~y~~~~~~~~~~G-~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 417 (767)
..+||||+-|+= --+.|... .-.|+|||||+|.-+++++-.+... -+ ..|++.+... ..... .
T Consensus 140 ~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~~-------~~~~~--~ 210 (366)
T PF10460_consen 140 YSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNNY-------TSGNY--N 210 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhhc-------cccCC--C
Confidence 348999999974 33344443 3469999999999999887655421 11 1122222210 00000 0
Q ss_pred CCCccccCCCCcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCCCCHHH-HHHHHHHhcCCCcc
Q 004221 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKE-FRHFANKVGNLERP 496 (767)
Q Consensus 418 ~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~-f~~~~~~~~~~~~~ 496 (767)
.. ...... . .-.-..|..+.+++.-|.+..|.+.+++.|. +... .+... +.++.+.+. ++.
T Consensus 211 ~~--l~~w~~--~--g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~----~~~~------tds~avl~aa~~~~~--~~~ 272 (366)
T PF10460_consen 211 CS--LTAWSS--F--GDSLASYSSSYSFGAYLYRQYGGDFYKKLLT----NSSS------TDSEAVLDAAIKQAG--PGN 272 (366)
T ss_pred cc--eeecCC--C--ccccccchhHHHHHHHHHHHcChHHHHHHHh----cCCC------CcHHHHHHHHHHhhc--CCC
Confidence 00 000100 0 0112458899999999999999888766554 2221 12222 333444443 245
Q ss_pred cHHhHHHhhccCC
Q 004221 497 FLKEFFPRWVGTC 509 (767)
Q Consensus 497 dl~~f~~~W~~~~ 509 (767)
++.++|.+|.-.-
T Consensus 273 sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 273 SFGELLRRWGVAL 285 (366)
T ss_pred CHHHHHHHHHHHH
Confidence 7999999998766
No 16
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=94.74 E-value=0.013 Score=52.80 Aligned_cols=41 Identities=20% Similarity=0.420 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhccccCC-----------CCCCchHHHHHHHHHHHHHHHHH
Q 004221 347 IKLSFALARQWFGVYITP-----------ELPNDEWLLDGLAGFLTDSFIKK 387 (767)
Q Consensus 347 ~~iaHElAHQWfG~lVt~-----------~~w~d~WL~EGfA~y~~~~~~~~ 387 (767)
.++|||..|.|-+-.+-| .--+.+|+-||+++|++.+++.+
T Consensus 6 ~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 6 GLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred hhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHH
Confidence 479999999998755544 44557899999999999988754
No 17
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=92.94 E-value=0.11 Score=61.79 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=75.5
Q ss_pred eeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcC-----------CCcccHHhHHHhhc
Q 004221 438 RSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN-----------LERPFLKEFFPRWV 506 (767)
Q Consensus 438 ~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~~~~~-----------~~~~dl~~f~~~W~ 506 (767)
.-.|+.++.+|+++++|.+-|.+..++.+...... ....|...+-...| ..++++.-+++||+
T Consensus 449 ~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~------~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v 522 (1180)
T KOG1932|consen 449 FVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM------LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWV 522 (1180)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh------HHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHh
Confidence 34699999999999999999999999998876532 23334333333222 23678999999999
Q ss_pred cCCCceEEEEEEEEecCCcEEEEEEEeeccCC
Q 004221 507 GTCGCPVLRMGFSYNKRKNIVELAVLRDCTVK 538 (767)
Q Consensus 507 ~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~ 538 (767)
.+.|...+.|...+|++++.++..++|..+..
T Consensus 523 ~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 523 RTGGHAPFSVFSDFNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred hhccccceeeecccchhhhhhhhhccccccCC
Confidence 99999999999999999999999999876643
No 18
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=90.65 E-value=0.58 Score=46.51 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHHHhcccceecccCCCcccCCCCccc
Q 004221 344 DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCK 423 (767)
Q Consensus 344 ~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (767)
+..-+|.|||+|-|=.+--... --||.||+|.|+-.. .|-. ..... .
T Consensus 95 Ei~Gvl~HE~~H~~Q~~~~~~~---P~~liEGIADyVRl~-----aG~~----------------~~~w~---------~ 141 (205)
T PF04450_consen 95 EIIGVLYHEMVHCWQWDGRGTA---PGGLIEGIADYVRLK-----AGYA----------------PPHWK---------R 141 (205)
T ss_pred HHHHHHHHHHHHHhhcCCCCCC---ChhheecHHHHHHHH-----cCCC----------------Ccccc---------C
Confidence 4455899999996654443222 239999999998321 0100 00000 0
Q ss_pred cCCCCcccccccceeeehHHHHHHHHHH-hhCHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCcccHHhHH
Q 004221 424 DLYGTQCIGIFGKIRSCKSVAILQMLEK-QMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFF 502 (767)
Q Consensus 424 ~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~-~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~~~~~~~~~dl~~f~ 502 (767)
+... ..++ -.|.-.+..|.-|+. ..|+ .|.+-|++=+.+..+. +...| +++. |+++++++
T Consensus 142 p~~~----~~wd-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y~------~~~~~----~~l~---G~~v~~LW 202 (205)
T PF04450_consen 142 PGGG----DSWD-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKYS------SDDFW----KELL---GKPVDELW 202 (205)
T ss_pred CCCC----CCcc-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCCC------cHhHH----HHHH---CcCHHHHH
Confidence 0000 0111 247889999999998 6654 4666666666555441 22333 3333 34688777
Q ss_pred Hh
Q 004221 503 PR 504 (767)
Q Consensus 503 ~~ 504 (767)
+.
T Consensus 203 ~e 204 (205)
T PF04450_consen 203 AE 204 (205)
T ss_pred hh
Confidence 64
No 19
>PRK09687 putative lyase; Provisional
Probab=85.77 E-value=2.4 Score=44.61 Aligned_cols=50 Identities=18% Similarity=0.089 Sum_probs=27.8
Q ss_pred ccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhccc
Q 004221 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (767)
Q Consensus 666 ~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~ 721 (767)
.|+|-.-+.+|+.+|++.+ +..++..|.+.|.++. +|++|+.||+++.++
T Consensus 202 ~D~~~~VR~~A~~aLg~~~--~~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRK--DKRVLSVLIKELKKGT----VGDLIIEAAGELGDK 251 (280)
T ss_pred cCCChHHHHHHHHHHHccC--ChhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH
Confidence 5555555666666666543 2345556666665542 455666666665554
No 20
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=83.83 E-value=3.1 Score=34.80 Aligned_cols=55 Identities=31% Similarity=0.259 Sum_probs=44.6
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHH
Q 004221 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 716 (767)
Q Consensus 658 ~~~~~qL~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~ 716 (767)
..+...| +|.|..-|..|+.+|++.+ +..+...|.+.+.++ .-..||.+|+.+||
T Consensus 34 ~~L~~~l-~d~~~~vr~~a~~aL~~i~--~~~~~~~L~~~l~~~-~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 34 PALIELL-KDEDPMVRRAAARALGRIG--DPEAIPALIKLLQDD-DDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHH-TSSSHHHHHHHHHHHHCCH--HHHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHcCC-CcHHHHHHHHhhcC
Confidence 3445566 8999999999999999875 566788999999886 35889999999996
No 21
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=80.60 E-value=6.5 Score=38.93 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhccccC----CCCCCchHHHHHHHHHHHHHHH
Q 004221 346 SIKLSFALARQWFGVYIT----PELPNDEWLLDGLAGFLTDSFI 385 (767)
Q Consensus 346 ~~~iaHElAHQWfG~lVt----~~~w~d~WL~EGfA~y~~~~~~ 385 (767)
..++|||+.|.+--..+. ...--|.-+.||+|.+++....
T Consensus 66 ~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~ 109 (195)
T PF10026_consen 66 PALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELY 109 (195)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHc
Confidence 458999999985333332 1122356799999999876554
No 22
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=80.00 E-value=2.3 Score=45.15 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004221 345 TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (767)
Q Consensus 345 ~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~ 388 (767)
...+|-||||||=+.. -+|.=+||+||++.+..-.++.
T Consensus 165 LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 165 LARLIFHELAHQTLYV------KGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHHHHHH
Confidence 3568999999993321 2467889999999986655443
No 23
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=79.81 E-value=22 Score=38.90 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=43.0
Q ss_pred EEEecCCCceeEEEeecCchHHHHHHHcccCChHHHHHHHHHHHcC--------------CCCchhHhhHHHHhhccCc
Q 004221 638 WIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL--------------PHLSFNVVNTLNNFLSDSK 702 (767)
Q Consensus 638 wir~d~~~~~~~~v~~~~~~~~~~~qL~~d~dv~aq~~a~~~l~~~--------------~~~s~~~~~~L~~~l~~~~ 702 (767)
-.-+.-||.---+++++++++.+..++.+|.|-..|-+|.+.|... ...+...+.++..+|.|..
T Consensus 68 vpSllRgFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~ 146 (367)
T PF11940_consen 68 VPSLLRGFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDD 146 (367)
T ss_dssp EEEESTTG-SSSEEE----HHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SS
T ss_pred eeehhcCcccceEecCCCCHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCC
Confidence 3577888888889999999999999999999999999999887742 0134446666677776543
No 24
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=77.32 E-value=3.5 Score=27.19 Aligned_cols=25 Identities=36% Similarity=0.275 Sum_probs=20.1
Q ss_pred HHHHhhccCcchhHHHHHHHHHHHhhc
Q 004221 693 TLNNFLSDSKAFWRVRIEAAYALANTA 719 (767)
Q Consensus 693 ~L~~~l~~~~~f~~vr~~Aa~~L~~~~ 719 (767)
.|.+.+.|+ -|.||..|+.+|+.+.
T Consensus 4 ~l~~~l~D~--~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDP--SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-S--SHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 566778775 8999999999999875
No 25
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=71.70 E-value=5.1 Score=25.60 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHH
Q 004221 707 VRIEAAYALANTASEETDWAGLLHLVKFYK 736 (767)
Q Consensus 707 vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f~ 736 (767)
||.+||.+|+++..+ ..+..|+++.+
T Consensus 1 VR~~Aa~aLg~igd~----~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP----RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----HHHHHHHHHhc
Confidence 799999999988864 35666666543
No 26
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=71.15 E-value=4.8 Score=40.62 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHH
Q 004221 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKK 387 (767)
Q Consensus 346 ~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~ 387 (767)
..+|-||||||=|.-. +|.=+||+||++.+..-+++
T Consensus 198 A~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~ 233 (376)
T COG4324 198 ASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRK 233 (376)
T ss_pred HHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHH
Confidence 4589999999965432 46788999999998655443
No 27
>PRK09687 putative lyase; Provisional
Probab=70.46 E-value=13 Score=39.06 Aligned_cols=66 Identities=26% Similarity=0.143 Sum_probs=47.8
Q ss_pred cccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 004221 665 EKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (767)
Q Consensus 665 ~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f~ 736 (767)
..|.|-.-+..|+.+|...+..+..+...|...|.|+ .+.||.+|+.+|+++..+ ..+++|++.-+
T Consensus 168 L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~~~~----~av~~Li~~L~ 233 (280)
T PRK09687 168 LKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALRKDK----RVLSVLIKELK 233 (280)
T ss_pred hcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHccCCh----hHHHHHHHHHc
Confidence 3577777778888888876544566777788888764 778888888888877654 46777777765
No 28
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=70.40 E-value=13 Score=28.04 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=22.5
Q ss_pred hHhhHHHHhhccCcchhHHHHHHHHHHHhh
Q 004221 689 NVVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (767)
Q Consensus 689 ~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~ 718 (767)
.++..|...|.|... .||..|+.+|+++
T Consensus 28 ~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 28 ELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 356678888888654 9999999999864
No 29
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=69.52 E-value=2.9 Score=27.28 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 004221 705 WRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (767)
Q Consensus 705 ~~vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f 735 (767)
|.||.+||.+|+++..++ +...|+++.
T Consensus 1 ~~vR~~aa~aLg~~~~~~----a~~~L~~~l 27 (30)
T smart00567 1 PLVRHEAAFALGQLGDEE----AVPALIKAL 27 (30)
T ss_pred CHHHHHHHHHHHHcCCHh----HHHHHHHHh
Confidence 579999999999987653 445555543
No 30
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=68.70 E-value=75 Score=38.42 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=58.2
Q ss_pred cEEEEEcCCchhHHH--------HHHHHHHHHHHHHHHHcCCCC-CCCCccEEEECCCCcccccccccchhhhccccccC
Q 004221 265 LMSHICLPANVSKIH--------NTVEFFHNAFSHYETYLDAKF-PFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYD 335 (767)
Q Consensus 265 ~v~~~~~p~~~~~~~--------~~~~~~~~~l~~~e~~~g~~Y-P~~k~~~v~vp~~~~~~~~~~gagl~~~~~~lL~~ 335 (767)
.+.+..+|.+.+.+. ...+.=..++++|.++.|..+ |-...+.-+--..+.-|+ ..|+|-..|+....-.
T Consensus 144 ~i~lLVP~~Dk~~l~~~~~~~l~~L~~~Y~~i~~~Yd~l~Gl~~~~~~~~~~n~~~kYF~KAD-~~G~G~AYY~~~w~a~ 222 (775)
T PF03272_consen 144 YIQLLVPPADKPNLNNKDFKSLDELIDFYNDIFKFYDDLTGLSDDPSDPVDKNFNNKYFAKAD-KSGPGAAYYGSNWTAQ 222 (775)
T ss_pred EEEEEeCcchHHHHhhhcccCHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccccceEEEec-CCCCCCccccccceec
Confidence 466677777665554 334555778888888888533 211111111000111122 2244444444332211
Q ss_pred ccccchhhh----HHHHHHHHHHHHhhccccCC-CCCCchHHHHHHHHHHHHHHH
Q 004221 336 EKVIDQAID----TSIKLSFALARQWFGVYITP-ELPNDEWLLDGLAGFLTDSFI 385 (767)
Q Consensus 336 ~~~~~~~~~----~~~~iaHElAHQWfG~lVt~-~~w~d~WL~EGfA~y~~~~~~ 385 (767)
...+-..+- .--.+-|||+|.+=|..+.. ..+.+.| |-=||.++++.++
T Consensus 223 ss~s~~~~L~~~~~nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~ 276 (775)
T PF03272_consen 223 SSSSLSFYLNPSPTNWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYM 276 (775)
T ss_pred CchhHHHHhCCCCCCchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhc
Confidence 111100111 11257899999998888733 3455666 5556666665544
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=66.87 E-value=10 Score=46.98 Aligned_cols=69 Identities=33% Similarity=0.356 Sum_probs=48.1
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 004221 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (767)
Q Consensus 661 ~~qL~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f~ 736 (767)
+.+|.+|+|-..|..|+.+|++.+.. ......|...|.|+ .|.||.+|+.+|+++..++ .+..|+++.+
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~g~~-~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l~~~~----a~~~L~~~L~ 848 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAELGCP-PDDVAAATAALRAS--AWQVRQGAARALAGAAADV----AVPALVEALT 848 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCc-chhHHHHHHHhcCC--ChHHHHHHHHHHHhccccc----hHHHHHHHhc
Confidence 34556788888889999999887542 22335677888775 6899999999999876542 3355555553
No 32
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=66.35 E-value=10 Score=38.79 Aligned_cols=60 Identities=28% Similarity=0.271 Sum_probs=46.7
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhccccc
Q 004221 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET 723 (767)
Q Consensus 661 ~~qL~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~ 723 (767)
+.-| .+..-.-|.|+..-|.+.. |..++-.|.+.|.|+..---||.|||.||+.+++++.
T Consensus 193 ~~~l-~~~SalfrhEvAfVfGQl~--s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 193 IDGL-ADDSALFRHEVAFVFGQLQ--SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred HHhc-ccchHHHHHHHHHHHhhcc--chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 4444 3346666888888888764 4556678999999988888999999999999998764
No 33
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=65.93 E-value=13 Score=36.58 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004221 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (767)
Q Consensus 346 ~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~ 388 (767)
-.++|||+.|-|.- +.--.--+.++-||+...++++|++..
T Consensus 94 gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 34799999999962 122222367999999999999998753
No 34
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=65.18 E-value=7.6 Score=32.23 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhhccccccCccccchh-hhHHHHHHHHHHHHh
Q 004221 288 AFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQA-IDTSIKLSFALARQW 357 (767)
Q Consensus 288 ~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~-~~~~~~iaHElAHQW 357 (767)
+...+|..||.+ |+...+-.-|... ......+|--.+..+.+.+.+....+. .....+++|||+|-+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~-~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAAS-RAAAALGARAFTVGNDIYFAPGKYNPDSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchh-hhhhccCCeEEEECCEEEEcCCCcCCCCCCcchhHhHHHHHHH
Confidence 456788999854 6666554332111 111223332334455566644322111 123458999999954
No 35
>PRK04860 hypothetical protein; Provisional
Probab=62.89 E-value=19 Score=34.36 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhh-ccccccCccccc--hhhhHHHHHHHHHHHHhh
Q 004221 282 VEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVID--QAIDTSIKLSFALARQWF 358 (767)
Q Consensus 282 ~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~~--~~~~~~~~iaHElAHQWf 358 (767)
...+...+..-+++||.|||-+...+- .. +. . ||.... +..+=++|.... .......+|+|||||.|-
T Consensus 6 ~~~~~~~~~~a~~~f~~~f~~p~~~f~--~R---~r--t--aG~~~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 6 MRRLRECLAQANLYFKRTFPEPKVSYT--QR---GT--S--AGTAWLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEe--ec---ch--h--hcchhHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 445556666777888888777653322 11 11 1 232222 222333333211 112234589999999873
No 36
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=56.70 E-value=18 Score=33.90 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=32.0
Q ss_pred HHHHHHH-HHcCCCCCCCCccEEEECCCCcccccccccchhhh-ccccccCccccch--hhhHHHHHHHHHHHHhhc
Q 004221 287 NAFSHYE-TYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQ--AIDTSIKLSFALARQWFG 359 (767)
Q Consensus 287 ~~l~~~e-~~~g~~YP~~k~~~v~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~~~--~~~~~~~iaHElAHQWfG 359 (767)
+.++.++ .+|+.++|-+ .+.+-. .|-..+ |.-.. ...+-+++..... ......+|.|||||.|..
T Consensus 5 ~~~~~~n~~~F~~~l~~~--~i~w~~-----r~~~~~-G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHP--KVVWNK-----RLRKTG-GRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCC--EEEEeh-----hhhhhh-HHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444454 7888777765 233221 111111 22222 2224444443321 122344899999999975
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.06 E-value=19 Score=44.68 Aligned_cols=51 Identities=24% Similarity=0.153 Sum_probs=42.5
Q ss_pred cccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 004221 665 EKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (767)
Q Consensus 665 ~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~ 719 (767)
..|.|-.-+..|+.+|...+ +...+..|...|.|+ .+.||.+|+.+|+++.
T Consensus 816 L~d~d~~VR~~Aa~aL~~l~--~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 816 LRASAWQVRQGAARALAGAA--ADVAVPALVEALTDP--HLDVRKAAVLALTRWP 866 (897)
T ss_pred hcCCChHHHHHHHHHHHhcc--ccchHHHHHHHhcCC--CHHHHHHHHHHHhccC
Confidence 36677777889999999875 345678999999886 7899999999999973
No 38
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=48.74 E-value=36 Score=33.69 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCccccccccc----chhhhccccccCccccchhhhHHHHHHHHHHH
Q 004221 280 NTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALAR 355 (767)
Q Consensus 280 ~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~ga----gl~~~~~~lL~~~~~~~~~~~~~~~iaHElAH 355 (767)
.+.......+..|++.+|.++ +++. +- .+ ..-||. |.++++..|+.-|.. -...+|+|||||
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~---ir-~~---ksrWGsc~~~~~I~ln~~L~~~P~~-----~idYVvvHEL~H 174 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIK---IR-DM---KSRWGSCSSKGNITLNWRLVMAPPE-----VIDYVVVHELCH 174 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEE---Ee-eh---hhccccCCCCCcEEeecccccCCcc-----HHHHHHHHHHHH
Confidence 455677788888899988643 4433 32 11 124553 345555554433321 124589999999
Q ss_pred Hhhcc
Q 004221 356 QWFGV 360 (767)
Q Consensus 356 QWfG~ 360 (767)
-..-|
T Consensus 175 l~~~n 179 (205)
T PF01863_consen 175 LRHPN 179 (205)
T ss_pred hccCC
Confidence 87544
No 39
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=41.84 E-value=26 Score=30.80 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhcccc
Q 004221 345 TSIKLSFALARQWFGVYI 362 (767)
Q Consensus 345 ~~~~iaHElAHQWfG~lV 362 (767)
.+.+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 355899999999988764
No 40
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=40.65 E-value=1.2e+02 Score=28.70 Aligned_cols=74 Identities=4% Similarity=0.051 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCCCCCCC--ccEEE-EC--CCCcccccccccchhhhcc--ccccCccccchhhhHHH
Q 004221 275 VSKIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQVF-LA--PEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSI 347 (767)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~v~-vp--~~~~~~~~~~gagl~~~~~--~lL~~~~~~~~~~~~~~ 347 (767)
...+..+...+.++.+||.++|| .=++.. ..++. |- ....+|. |-+.-++|.+ ...+.+- .....
T Consensus 66 ~~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAf--W~g~~m~yGdG~~~~f~~~-----~~~lD 137 (150)
T PF01447_consen 66 DSAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAF--WNGSQMVYGDGDGQIFKPF-----ASSLD 137 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EE--E-SSSEEEE---SSSBS-G-----GG-HH
T ss_pred ccHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCcc--ccCCEEEEECCCCcccccC-----ccccc
Confidence 34556677788999999999998 445542 33332 21 1223332 2222333321 1122221 12245
Q ss_pred HHHHHHHHH
Q 004221 348 KLSFALARQ 356 (767)
Q Consensus 348 ~iaHElAHQ 356 (767)
++||||+|-
T Consensus 138 VvaHEltHG 146 (150)
T PF01447_consen 138 VVAHELTHG 146 (150)
T ss_dssp HHHHHHHHH
T ss_pred eeeeccccc
Confidence 899999996
No 41
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=38.45 E-value=87 Score=33.61 Aligned_cols=59 Identities=34% Similarity=0.342 Sum_probs=37.9
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhccc
Q 004221 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (767)
Q Consensus 658 ~~~~~qL~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~ 721 (767)
+..+..| .+++..-+..|+..|...+ +..++..|.+.+.|.. +.||-.|+.+|++...+
T Consensus 46 ~~~~~~l-~~~~~~vr~~aa~~l~~~~--~~~av~~l~~~l~d~~--~~vr~~a~~aLg~~~~~ 104 (335)
T COG1413 46 DELLKLL-EDEDLLVRLSAAVALGELG--SEEAVPLLRELLSDED--PRVRDAAADALGELGDP 104 (335)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHhhhc--hHHHHHHHHHHhcCCC--HHHHHHHHHHHHccCCh
Confidence 3444554 4557777777777777653 3455666777777753 37777777777766654
No 42
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=35.71 E-value=46 Score=33.30 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhccccCC
Q 004221 345 TSIKLSFALARQWFGVYITP 364 (767)
Q Consensus 345 ~~~~iaHElAHQWfG~lVt~ 364 (767)
..-+||||++|-.-++....
T Consensus 89 l~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 89 LAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp HHHHHHHHHHHHHTTHCCCC
T ss_pred HHHHHHHHHHHHHcCCcchH
Confidence 34589999999998876554
No 43
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=32.75 E-value=29 Score=30.20 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHh
Q 004221 346 SIKLSFALARQW 357 (767)
Q Consensus 346 ~~~iaHElAHQW 357 (767)
+.+++|||+|-|
T Consensus 80 ~~TL~HEL~H~W 91 (141)
T PHA02456 80 RDTLAHELNHAW 91 (141)
T ss_pred HHHHHHHHHHHH
Confidence 457999999999
No 44
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=31.03 E-value=1.4e+02 Score=33.38 Aligned_cols=103 Identities=6% Similarity=0.028 Sum_probs=54.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCCC--CccEEEECCC---Ccccccccccchhhhc--cccccCccccchhhh
Q 004221 272 PANVSKIHNTVEFFHNAFSHYETYLDAKFPFG--SYKQVFLAPE---MAVSSSTFGAAMGIFS--SQILYDEKVIDQAID 344 (767)
Q Consensus 272 p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~--k~~~v~vp~~---~~~~~~~~gagl~~~~--~~lL~~~~~~~~~~~ 344 (767)
|+....+..+-..+....+||.++||-. -++ .+.++..--+ ..++ .|-+--++|. +...|.+-. .
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr~-S~Dn~g~~l~s~vHyG~~ynNA--fWdG~qMvyGDGDG~~f~~~S-----~ 336 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGRN-SYDNNGMPLVSTVHYGKNYNNA--FWDGDQMVYGDGDGSFFTPFS-----G 336 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhccc-CcCCCCCceEEEEeeccccccc--cccCceeEeecCCcceecccc-----c
Confidence 4444556677778889999999999832 332 2344321100 0111 1211112221 223333211 1
Q ss_pred HHHHHHHHHHHHh---hccccCCCCCCchHHHHHHHHHHHHHH
Q 004221 345 TSIKLSFALARQW---FGVYITPELPNDEWLLDGLAGFLTDSF 384 (767)
Q Consensus 345 ~~~~iaHElAHQW---fG~lVt~~~w~d~WL~EGfA~y~~~~~ 384 (767)
...++||||.|.- --+|+.-..- -=|||+|+.-+..++
T Consensus 337 sLDVvAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i 377 (507)
T COG3227 337 SLDVVAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLI 377 (507)
T ss_pred ccceehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHH
Confidence 2347999999954 4455544332 258999999887544
No 45
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.59 E-value=28 Score=40.07 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=28.3
Q ss_pred HhhHHHHhhccCcchhHHHHHHHHHHHhhccccccc--ccHHHHHHHHH
Q 004221 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--AGLLHLVKFYK 736 (767)
Q Consensus 690 ~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~--~g~~~L~~~f~ 736 (767)
+|.+|..-|.|| ||-||..|..+|.++++..+.+ ..|..|+..|.
T Consensus 374 ACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfN 420 (823)
T KOG2259|consen 374 ACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFN 420 (823)
T ss_pred ccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Confidence 566777777664 7777777777777776644433 34555555554
No 46
>PRK03982 heat shock protein HtpX; Provisional
Probab=29.87 E-value=90 Score=32.93 Aligned_cols=16 Identities=6% Similarity=-0.219 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhcc
Q 004221 345 TSIKLSFALARQWFGV 360 (767)
Q Consensus 345 ~~~~iaHElAHQWfG~ 360 (767)
..-++|||++|-==|+
T Consensus 125 l~AVlAHElgHi~~~h 140 (288)
T PRK03982 125 LEGVIAHELTHIKNRD 140 (288)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4558999999975444
No 47
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=29.59 E-value=28 Score=37.31 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHH
Q 004221 347 IKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKK 387 (767)
Q Consensus 347 ~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~ 387 (767)
.++|||+|||= | ...|.=|+|++++...+
T Consensus 198 ~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 198 FTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred HHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 37999999994 2 23788899999887654
No 48
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=28.56 E-value=33 Score=33.18 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHh
Q 004221 346 SIKLSFALARQW 357 (767)
Q Consensus 346 ~~~iaHElAHQW 357 (767)
..++||||+||+
T Consensus 112 ~~~~aHElGH~l 123 (173)
T PF13574_consen 112 IDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehhhhHhhc
Confidence 347999999997
No 49
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=28.21 E-value=1.2e+02 Score=32.65 Aligned_cols=75 Identities=29% Similarity=0.279 Sum_probs=51.6
Q ss_pred eeEEEeecCchHHHHHHHcccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCc----------chhHHHHHHHHHHH
Q 004221 647 YLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSK----------AFWRVRIEAAYALA 716 (767)
Q Consensus 647 ~~~~v~~~~~~~~~~~qL~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~----------~f~~vr~~Aa~~L~ 716 (767)
.++.+...+.-.-++..|+.|.+...+..|+.+|.+.. +...+..|...+.++. ..+.+|..|+.+|+
T Consensus 97 aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~--~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~ 174 (335)
T COG1413 97 ALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLG--DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG 174 (335)
T ss_pred HHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC--chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 34444222223345677777888888999999998764 3345667777777754 56788999999999
Q ss_pred hhccccc
Q 004221 717 NTASEET 723 (767)
Q Consensus 717 ~~~~~~~ 723 (767)
.+..++.
T Consensus 175 ~~~~~~~ 181 (335)
T COG1413 175 ELGDPEA 181 (335)
T ss_pred HcCChhh
Confidence 8876544
No 50
>PRK01345 heat shock protein HtpX; Provisional
Probab=27.45 E-value=94 Score=33.30 Aligned_cols=67 Identities=7% Similarity=-0.055 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCccEEEECCCCccccccccc----chhhhccccccCccccchhhhHHHHHHHHHHHHhhcc
Q 004221 285 FHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGV 360 (767)
Q Consensus 285 ~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~ga----gl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~ 360 (767)
..++++-+.+..|++ .+++ ..+++...++. ..|. +.+.+++.||-.- + ..+..-++|||++|.==++
T Consensus 69 L~~~v~~La~~agi~--~p~v--~vid~~~~NAF-a~G~~~~~~~V~vt~gLL~~L---~-~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKV--YIIDNPQPNAF-ATGRNPENAAVAATTGLLQRL---S-PEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcE--EEEcCCCcceE-EecCCCCCeEEEechHHHhhC---C-HHHHHHHHHHHHHHHHcCC
Confidence 345566666677765 4554 34443333332 2221 1233344443211 1 1234558999999975444
No 51
>PRK04351 hypothetical protein; Provisional
Probab=27.37 E-value=94 Score=29.27 Aligned_cols=12 Identities=8% Similarity=-0.095 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q 004221 345 TSIKLSFALARQ 356 (767)
Q Consensus 345 ~~~~iaHElAHQ 356 (767)
...+|+|||+|-
T Consensus 61 l~~vv~HElcH~ 72 (149)
T PRK04351 61 LIGIIKHELCHY 72 (149)
T ss_pred HHhhHHHHHHHH
Confidence 345899999995
No 52
>PRK03001 M48 family peptidase; Provisional
Probab=27.02 E-value=1.1e+02 Score=32.25 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHhhc
Q 004221 344 DTSIKLSFALARQWFG 359 (767)
Q Consensus 344 ~~~~~iaHElAHQWfG 359 (767)
+...++|||++|-==+
T Consensus 123 El~aVlAHElgHi~~~ 138 (283)
T PRK03001 123 EIRGVMAHELAHVKHR 138 (283)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3455899999997543
No 53
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=25.26 E-value=58 Score=36.37 Aligned_cols=53 Identities=6% Similarity=0.066 Sum_probs=29.6
Q ss_pred CCCCccEEEECCCCcccccccccchhhhccccccCccccchhhhHHHHHHHHHHHHh
Q 004221 301 PFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQW 357 (767)
Q Consensus 301 P~~k~~~v~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQW 357 (767)
|-..+.++.|-+...++--..| |-+...+.+|...+ ...+...|||||++|-=
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~G-g~v~vntGLll~ae---~esElagViAHEigHv~ 142 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPG-GYVVVNTGLLLTAE---NESELAGVIAHEIGHVA 142 (484)
T ss_pred CCCCeEEEEecCCccchhhcCC-ceEEEehHHHHhcC---CHHHHHHHHHHHHHHHh
Confidence 4455788888765444432333 34444555443222 12344569999999953
No 54
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=24.99 E-value=53 Score=30.89 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHhhcc
Q 004221 344 DTSIKLSFALARQWFGV 360 (767)
Q Consensus 344 ~~~~~iaHElAHQWfG~ 360 (767)
....+|.|||+|.|...
T Consensus 59 ~~~~tL~HEm~H~~~~~ 75 (157)
T PF10263_consen 59 ELIDTLLHEMAHAAAYV 75 (157)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34458999999999743
No 55
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.86 E-value=80 Score=26.96 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHHhhccccc-ccccH-HHHHHHHHhcCCCCCC
Q 004221 703 AFWRVRIEAAYALANTASEET-DWAGL-LHLVKFYKSRRFDENI 744 (767)
Q Consensus 703 ~f~~vr~~Aa~~L~~~~~~~~-~~~g~-~~L~~~f~~~~~~~~~ 744 (767)
.-|.+|-.||..|+.+...-. .+.+| +.+.+.+.+.+.+|..
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~ 61 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKK 61 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCC
Confidence 479999999999998876542 34555 5788888888888764
No 56
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=22.13 E-value=54 Score=32.12 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhccc
Q 004221 346 SIKLSFALARQWFGVY 361 (767)
Q Consensus 346 ~~~iaHElAHQWfG~l 361 (767)
..++.|||||.++|+-
T Consensus 83 ~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 83 LGTMLHELAHNVHGPH 98 (186)
T ss_pred HHHHHHHHHhcccCCc
Confidence 4589999999998873
No 57
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=21.36 E-value=1.7e+02 Score=29.33 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcccc-----CCCCCCchHHHHHHHHHHHHHHH
Q 004221 346 SIKLSFALARQWFGVYI-----TPELPNDEWLLDGLAGFLTDSFI 385 (767)
Q Consensus 346 ~~~iaHElAHQWfG~lV-----t~~~w~d~WL~EGfA~y~~~~~~ 385 (767)
+-++||||.|-|+.--. ....|...=..|-.|++++..++
T Consensus 73 rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~lL 117 (213)
T COG2856 73 RFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAELL 117 (213)
T ss_pred HHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHHHh
Confidence 45899999999998664 23344555567888888876554
No 58
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=21.25 E-value=1.6e+02 Score=29.79 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCccccccccc----chhhhccccccCccccchhhhHHHHHHHHHHH
Q 004221 280 NTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALAR 355 (767)
Q Consensus 280 ~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~ga----gl~~~~~~lL~~~~~~~~~~~~~~~iaHElAH 355 (767)
.+.+.....++.|.+.+|.++.--++. .. ..-||. |-+.++..+..-|. ....-+++|||||
T Consensus 120 ~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~-------k~~WGScs~~~~i~~~~~l~~~p~-----~~i~YVvvHELaH 185 (223)
T COG1451 120 ILREILEIRLKEYAKKLGVPPRAIKLK--NM-------KRRWGSCSKAGEIRFNWRLVMAPE-----EVIDYVVVHELAH 185 (223)
T ss_pred HHHHHHHHHHHHHHHHhCCCccceeee--ec-------cceeeeecCCCcEEeehhhhcCCH-----HHHHHHHHHHHHH
Confidence 455677788888899998765422222 11 123432 22222222222111 1224589999999
Q ss_pred Hhhcc
Q 004221 356 QWFGV 360 (767)
Q Consensus 356 QWfG~ 360 (767)
-=..|
T Consensus 186 Lke~n 190 (223)
T COG1451 186 LKEKN 190 (223)
T ss_pred Hhhhh
Confidence 98877
No 59
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=20.46 E-value=30 Score=38.36 Aligned_cols=58 Identities=31% Similarity=0.362 Sum_probs=38.6
Q ss_pred HhhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccH----HHHHHHHHhcCCCCCCCCCCCCCCCChhHHH
Q 004221 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGL----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYF 759 (767)
Q Consensus 690 ~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~~g~----~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~ 759 (767)
+-.+|+..+.+. ..++||+.||.+|+.-+..+...-.+ ..|+.+ +.+.|+|-+|..|-
T Consensus 574 ~F~~L~~Lv~~~-~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~a-----------Li~s~~~v~f~eY~ 635 (728)
T KOG4535|consen 574 AFNALTSLVTSC-KNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTA-----------LQKSEDTIDFLEYK 635 (728)
T ss_pred HHHHHHHHHHHh-ccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 456777777775 57899999999999888766543222 233333 33566777776664
No 60
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=20.31 E-value=1.3e+02 Score=30.94 Aligned_cols=70 Identities=26% Similarity=0.183 Sum_probs=48.6
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 004221 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (767)
Q Consensus 660 ~~~qL~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f 735 (767)
|+.+-..|.......+....|.++.. ..++.+|...|.|++--=-||-|||.+|+....++ -+..|.|+.
T Consensus 40 ~i~ka~~d~s~llkhe~ay~LgQ~~~--~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~----~~~~l~k~~ 109 (289)
T KOG0567|consen 40 AITKAFIDDSALLKHELAYVLGQMQD--EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPE----SLEILTKYI 109 (289)
T ss_pred HHHHhcccchhhhccchhhhhhhhcc--chhhHHHHHHhcccccchHHHHHHHHHHHhhcchh----hHHHHHHHh
Confidence 55555455555555577888887643 34678899999998878899999999999876322 344555555
Done!