Query 004221
Match_columns 767
No_of_seqs 349 out of 2147
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 18:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3se6_A Endoplasmic reticulum a 100.0 1.2E-85 4E-90 791.3 45.3 588 12-719 66-707 (967)
2 4fke_A Aminopeptidase N; zinc 100.0 7E-84 2.4E-88 778.8 37.7 595 9-719 5-642 (909)
3 2xdt_A Endoplasmic reticulum a 100.0 1.2E-82 4.2E-87 766.1 44.9 591 10-719 4-639 (897)
4 3ebh_A PFA-M1, M1 family amino 100.0 2.1E-80 7.2E-85 731.5 54.3 545 12-682 7-578 (889)
5 3b34_A Aminopeptidase N; prote 100.0 4.9E-80 1.7E-84 733.5 49.1 566 12-701 32-627 (891)
6 1z5h_A Tricorn protease intera 100.0 3.5E-81 1.2E-85 743.1 37.4 543 19-720 1-557 (780)
7 2gtq_A Aminopeptidase N; alani 100.0 8.6E-77 2.9E-81 708.2 47.0 578 15-719 12-621 (867)
8 3u9w_A Leukotriene A-4 hydrola 100.0 8E-75 2.7E-79 671.9 19.7 451 18-533 13-473 (608)
9 3cia_A Cold-active aminopeptid 100.0 1.8E-67 6E-72 610.1 33.8 426 16-518 23-463 (605)
10 2xq0_A LTA-4 hydrolase, leukot 100.0 1.8E-67 6.2E-72 611.7 31.7 427 17-518 26-466 (632)
11 4fgm_A Aminopeptidase N family 99.9 4.8E-24 1.7E-28 243.8 24.3 313 186-514 108-452 (597)
12 3rjo_A Endoplasmic reticulum a 98.8 2.7E-08 9.3E-13 109.8 13.0 147 510-719 1-156 (419)
13 1te4_A Conserved protein MTH18 83.4 1.6 5.5E-05 38.5 5.7 68 659-735 46-113 (131)
14 3ltj_A Alpharep-4; protein eng 72.8 6.3 0.00022 37.1 6.8 50 666-719 55-104 (201)
15 1u4g_A Elastase, pseudolysin; 70.6 24 0.00083 35.9 10.7 100 277-387 72-177 (301)
16 2y3u_A Collagenase, collagenas 68.5 2.7 9.1E-05 48.7 3.4 36 347-382 424-468 (785)
17 3ltm_A Alpha-REP4; protein eng 67.4 8.6 0.00029 36.5 6.5 51 666-720 60-110 (211)
18 1te4_A Conserved protein MTH18 65.3 6.3 0.00022 34.5 4.6 54 660-718 78-131 (131)
19 3ltj_A Alpharep-4; protein eng 64.5 10 0.00036 35.5 6.4 50 666-719 86-135 (201)
20 1oyz_A Hypothetical protein YI 64.1 14 0.00048 36.8 7.6 61 666-736 202-262 (280)
21 3ltm_A Alpha-REP4; protein eng 61.7 12 0.00043 35.3 6.4 50 666-719 122-171 (211)
22 1bqb_A Protein (aureolysin); h 61.2 40 0.0014 34.3 10.1 98 278-383 67-177 (301)
23 1oyz_A Hypothetical protein YI 61.2 14 0.00048 36.8 7.0 71 659-736 163-233 (280)
24 2vqx_A Metalloproteinase; ther 57.9 74 0.0025 32.9 11.5 107 276-390 88-202 (341)
25 3cqb_A Probable protease HTPX 56.9 12 0.00041 31.7 4.7 16 345-360 83-98 (107)
26 4ger_A Gentlyase metalloprotea 54.2 63 0.0022 32.8 10.1 101 277-385 62-170 (304)
27 3dnz_A Thermolysin; hydrolase, 52.0 76 0.0026 32.4 10.3 102 276-385 68-177 (316)
28 3c37_A Peptidase, M48 family; 38.0 24 0.00082 35.0 4.1 54 304-361 63-116 (253)
29 3nqx_A MCP-02, secreted metall 36.7 1.6E+02 0.0056 29.7 9.9 99 277-386 73-177 (306)
30 4db6_A Armadillo repeat protei 34.2 76 0.0026 29.4 7.0 79 656-736 12-106 (210)
31 2ejq_A Hypothetical protein TT 32.4 20 0.00068 31.6 2.1 25 344-369 88-112 (130)
32 2ys9_A Homeobox and leucine zi 31.3 62 0.0021 24.9 4.3 42 460-508 19-60 (70)
33 4db6_A Armadillo repeat protei 24.2 1E+02 0.0034 28.5 5.8 72 663-736 61-148 (210)
34 4db8_A Armadillo-repeat protei 23.5 1.1E+02 0.0036 29.3 6.0 73 661-736 60-148 (252)
35 4hxt_A De novo protein OR329; 22.5 95 0.0033 29.4 5.4 74 660-736 7-96 (252)
36 2kd2_A FAS apoptotic inhibitor 20.3 3.6E+02 0.012 22.0 7.6 64 183-254 9-73 (94)
No 1
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=100.00 E-value=1.2e-85 Score=791.30 Aligned_cols=588 Identities=16% Similarity=0.206 Sum_probs=447.3
Q ss_pred CCCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCee----------eee-eeCCC
Q 004221 12 TKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEP----------TEF-EYYPH 79 (767)
Q Consensus 12 ~~~~~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~-~~~~~I~L~~~~l~I~~v~v~g~~----------~~~-~~~~~ 79 (767)
.++....+.|.||+|.|++|+++.+|+|+|+|++.+ .+++.|.||+++|+|++|+|++.. +.. .+.
T Consensus 66 ~~RLP~~v~P~hY~L~L~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~I~~v~v~~~~~~~~~~~~~~~~~~~~~-- 143 (967)
T 3se6_A 66 ELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYP-- 143 (967)
T ss_dssp CSSCCTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCCSEEEEECSSCEEEEEEEEECC---CCSSCEECEEEEEG--
T ss_pred cccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEEEcCCCEEEEECCCCEEEEEEEeccCCcccccccceeeeEEec--
Confidence 456788999999999999999999999999999997 568999999999999999986321 111 000
Q ss_pred CcccchhhhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcC-ceEEE
Q 004221 80 NHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVR 158 (767)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~-~~~~~ 158 (767)
....|.|.++. .++.|. .+++ .+.|+|.+++. .|+|+
T Consensus 144 ------------------------------------~~~~l~i~l~~---~L~~g~-~~~l--~i~y~g~~~~~~~G~y~ 181 (967)
T 3se6_A 144 ------------------------------------AHEQIALLVPE---KLTPHL-KYYV--AMDFQAKLGDGFEGFYK 181 (967)
T ss_dssp ------------------------------------GGTEEEEECSS---CCCTTC-CEEE--EEEEEEECBSSSSEEEE
T ss_pred ------------------------------------CCCEEEEEcCC---ccCCCC-eEEE--EEEEEEecCCCccceee
Confidence 01146776543 343332 2444 47899988765 49999
Q ss_pred EEEEEecCCcceEEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEe
Q 004221 159 IDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYR 238 (767)
Q Consensus 159 ~~y~~~~~~~G~~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~ 238 (767)
+.|... +|. .+++++|||||.+||+||||||+|++||+|+|+|++|++|+|+|||++.++.. .++++++++|.
T Consensus 182 s~y~~~---~g~--~~~~~~Tq~ep~~AR~~FPC~DeP~~KAtf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~F~ 254 (967)
T 3se6_A 182 STYRTL---GGE--TRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIE--LEGGLLEDHFE 254 (967)
T ss_dssp EEEECT---TSC--EEEEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEECTTCEEEESSCEEEEEE--CTTSCEEEEEC
T ss_pred eeeEcC---CCc--eEEEEEEecccCCCCeEEEecCCcCceeEEEEEEEECCCcEEEeCCCccccee--cCCCeEEEEEe
Confidence 998643 232 25678999999999999999999999999999999999999999999976543 35688999999
Q ss_pred cCCCccceeeEEEEeeceEeecC--CCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcc
Q 004221 239 LDVPVSAKWITLAVAPFEVLPDH--HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAV 316 (767)
Q Consensus 239 ~t~p~s~yliafavg~f~~~~~~--~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~ 316 (767)
.++|||+|++||+||+|+.++.. .+.++++|++|+..++++++++.++++++|||++||+||||+|+|+|++|++..+
T Consensus 255 ~t~pmstYLva~~vg~f~~~~~~~~~gv~v~v~~~p~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vPdf~~G 334 (967)
T 3se6_A 255 TTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPG 334 (967)
T ss_dssp CCCSBCGGGCCEEEECCEEEEEECTTCCEEEEEECGGGGGGGHHHHHHHHHHHHHHHHHHTCCCCSSEEEEEEESSCSSS
T ss_pred cCCCccceeEEEEEeceEEEEeecCCCcEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccEEEecCCCCc
Confidence 99999999999999999988753 4678999999999999999999999999999999999999999999999998889
Q ss_pred cccccccchhhh-ccccccCccccchhh--hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchH
Q 004221 317 SSSTFGAAMGIF-SSQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNE 393 (767)
Q Consensus 317 ~~~~~gagl~~~-~~~lL~~~~~~~~~~--~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~ 393 (767)
+|||| ||++| ++.+|++++..+... ....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|...
T Consensus 335 aMEn~--Glity~e~~ll~d~~~s~~~~k~~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~p~~~ 412 (967)
T 3se6_A 335 AMENW--GLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQ 412 (967)
T ss_dssp EECCT--TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred ccccC--CccccchhheecCcccCCHHhhHhHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHHhcccch
Confidence 99999 68999 566889887544332 23458999999999999999999999999999999999999999888764
Q ss_pred HHHHHHHhcccceecccCCCcccCCCCccccC----C-CCcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 004221 394 ARYRRYKANCAVCKADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISR 468 (767)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~-~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~ 468 (767)
..-........ ++..++..+.+|+ . +.++..+|+.++|.||++|||||+..||++.|+++|+.|+++
T Consensus 413 ~~~~~~~~~~~--------al~~D~~~~~~Pi~~~v~~~~~i~~~Fd~i~Y~KGa~vL~mL~~~lG~e~F~~gLr~Yl~~ 484 (967)
T 3se6_A 413 FDDYFLNVCFE--------VITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKK 484 (967)
T ss_dssp HHHHHHHHHHH--------HHTTTTSTTCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HHHhhcccCCCCceeecCCHHHHHHhcchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 31000111111 1111111122222 1 234556899999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHhcC------------------------CCcccHHhHHHhhccCCCceEEEEEEEEecCC
Q 004221 469 AQGASPVRTLSTKEFRHFANKVGN------------------------LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRK 524 (767)
Q Consensus 469 ~~~~~~~~~~st~~f~~~~~~~~~------------------------~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~ 524 (767)
|++++ ++++||++.++++.. .++.||++||++|+.|+|||+|+|+++ +
T Consensus 485 ~~~~n----at~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W~~q~G~Pvl~V~~~----~ 556 (967)
T 3se6_A 485 FSYRN----AKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQD----G 556 (967)
T ss_dssp HTTEE----ECHHHHHHHHHCC-------------------------CCCCCCHHHHHHHHHHSCSCEEEEEEEE----T
T ss_pred hccCC----CCHHHHHHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHHhcCCCCcEEEEEec----C
Confidence 99996 689999998887521 146799999999999999999999873 4
Q ss_pred cEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCCcceeeEEEEeccCCcccccccccCCCcceeEeeeecccchhhhh
Q 004221 525 NIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRA 604 (767)
Q Consensus 525 ~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plti~~~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~ 604 (767)
+.+.|+|+|+....... .++......+..|++|+++.... +++....++ ..+. . .
T Consensus 557 ~~~~l~Q~rf~~~~~~~-------~~~~~~~~~~~~W~IPl~~~~~~-~~~~~~~~l--~~~~-~--~------------ 611 (967)
T 3se6_A 557 CSLRLQQERFLQGVFQE-------DPEWRALQERYLWHIPLTYSTSS-SNVIHRHIL--KSKT-D--T------------ 611 (967)
T ss_dssp TEEEEEEEECCCC------------------CCSCCCCCCEEEEESS-CCCCEEECC--CSSE-E--E------------
T ss_pred CEEEEEeeeecCCCCCC-------ccccccccCCceEEEEEEEEeCC-CCccceEEe--cCCc-e--E------------
Confidence 57899999876421100 00000001235899999997643 222111010 0000 0 0
Q ss_pred cCCCCCCCCCCCCCCCCccccccccccCCCCeeEEEecCCCceeEEEeecCch-HHHHHHHcccC------ChHHHHHHH
Q 004221 605 LKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPV-QMWINQLEKDG------DVVAQAQAI 677 (767)
Q Consensus 605 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir~d~~~~~~~~v~~~~~~-~~~~~qL~~d~------dv~aq~~a~ 677 (767)
+ ....+.+||.+|+++.++|||+|+... ..++.+|+.++ |...-++++
T Consensus 612 ------------------i-------~~~~~~~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~ 666 (967)
T 3se6_A 612 ------------------L-------DLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDV 666 (967)
T ss_dssp ------------------E-------ECSSCCSCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred ------------------E-------eccCCCceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 0 011345799999999999999655432 33467886544 333445888
Q ss_pred HHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 004221 678 AALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (767)
Q Consensus 678 ~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~ 719 (767)
.+|++.+..+...+..|.+.|.+|. -|-++..|...|..+.
T Consensus 667 ~~la~~g~~~~~~~l~l~~~l~~E~-~~~~w~~a~~~l~~l~ 707 (967)
T 3se6_A 667 FQLVGAGRLTLDKALDMTYYLQHET-SSPALLEGLSYLESFY 707 (967)
T ss_dssp HHHHHTTSSCHHHHHHHTTGGGTCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHH
Confidence 9999998888888888899999884 6788999998887654
No 2
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=100.00 E-value=7e-84 Score=778.84 Aligned_cols=595 Identities=14% Similarity=0.200 Sum_probs=439.0
Q ss_pred CCCCCCCCCCeEEEEEEEEEEEeccC-----cEEEEEEEEEEEc-CCcceEEEeccCceeeEE----EEcCe---e-e--
Q 004221 9 NEETKVENSGAVVRHQKLCLSIDMEK-----HQIYGYTELEIAV-PDIGIVGLHAENLGIESV----LVDGE---P-T-- 72 (767)
Q Consensus 9 ~~~~~~~~~~~~~~hy~l~L~id~~~-----~~~~G~v~i~i~~-~~~~~I~L~~~~l~I~~v----~v~g~---~-~-- 72 (767)
+-..++....+.|.||+|.|++|++. .+|+|+|+|++.+ .+++.|+||+++|+|.++ .+++. . .
T Consensus 5 P~~~yRLP~~v~P~hY~l~L~~~l~~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~i~~~~~~~~~~~~~~~~~~~~ 84 (909)
T 4fke_A 5 PWNRYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGHMVVLRGVGDSQVPEI 84 (909)
T ss_dssp GGGSSSCCSSEEEEEEEEEEEECCSCCSSSCCEEEEEEEEEEEESSCEEEEEEECCSCEECCSSSSCEEEESTTCCCCCE
T ss_pred CcccccCcCCCEeEEEEEEEEEcCcCCCCCCceEEEEEEEEEEEecCCCEEEEEcCCCEEEeeeeEEEEecCCCcceecc
Confidence 34456788999999999999988753 4799999999997 568999999999999752 22211 0 0
Q ss_pred -eeeeCCCCcccchhhhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCC
Q 004221 73 -EFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPK 151 (767)
Q Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~ 151 (767)
...+. .....|.|.++. .++.|. .+++ .+.|+|.++
T Consensus 85 ~~~~~~-------------------------------------~~~~~l~i~l~~---~l~~g~-~~~l--~i~y~g~~~ 121 (909)
T 4fke_A 85 DRTELV-------------------------------------ELTEYLVVHLKG---SLQPGH-MYEM--ESEFQGELA 121 (909)
T ss_dssp EEEEEE-------------------------------------TTTTEEEEEEEE---EECTTC-EEEE--EEEEEEECC
T ss_pred cceEEe-------------------------------------cCCcEEEEEcCC---CcCCCC-EEEE--EEEEEEEEC
Confidence 01111 011236776643 343332 2344 478999988
Q ss_pred cCc-eEEEEEEEEecCCcceEEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceee-ccCC
Q 004221 152 QNV-KLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVL-SKDD 229 (767)
Q Consensus 152 ~~~-~~~~~~y~~~~~~~G~~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~-~~~~ 229 (767)
+.. |+|++.|... .. .+++++|||||.+||+||||||+|++||+|+|+|++|++|+|+|||+++++.. ..++
T Consensus 122 ~~~~G~y~s~y~~~--~~----~~~~~~Tqfep~~AR~~FPc~DeP~~KAtf~i~i~~p~~~~alSN~~~~~~~~~~~~~ 195 (909)
T 4fke_A 122 DDLAGFYRSEYMEG--NV----KKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAED 195 (909)
T ss_dssp SSSSEEEEEEEEET--TE----EEEEEEEECTTTTGGGTSCBCCSTTSCBEEEEEEEEETTSEEEESSCBSSSCEECTTC
T ss_pred CCCeEEEEeeEEEC--Cc----eEEEEEEcCcccCcCEEEEeCCccccceEEEEEEEECCCCEEEcCCcccccccceecC
Confidence 754 9999999753 12 26789999999999999999999999999999999999999999999976543 2346
Q ss_pred CCceEEEEecCCCccceeeEEEEeeceEeecCC--CCcEEEEEcCCchhH--HHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q 004221 230 PPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHH--QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSY 305 (767)
Q Consensus 230 ~~~~~~~f~~t~p~s~yliafavg~f~~~~~~~--~~~v~~~~~p~~~~~--~~~~~~~~~~~l~~~e~~~g~~YP~~k~ 305 (767)
+++++++|..++|||+|++||+||+|+.++... +.++++|++|+..++ .+++++.+++++++||++||+|||++|+
T Consensus 196 ~~~~~~~f~~t~pmstYL~a~~vg~f~~~~~~~~~g~~~~v~~~p~~~~~~~~~~al~~~~~~l~~~e~~~~~~Yp~~k~ 275 (909)
T 4fke_A 196 PNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKS 275 (909)
T ss_dssp TTEEEEEBCCCCSBCGGGCCEEEESCEEEEEECTTSCEEEEEECHHHHHTTTTHHHHHHHHHHHHHHHHHTTSCCSSSEE
T ss_pred CCeEEEEEecCCCccceeeEEEecceEEEeeccCCCcEEEEEEecchhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 789999999999999999999999999886543 578999999997654 4689999999999999999999999999
Q ss_pred cEEEECCCCcccccccccchhhh-ccccccCccccchhhh--HHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHH
Q 004221 306 KQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQAID--TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (767)
Q Consensus 306 ~~v~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~~~~~~--~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~ 382 (767)
|+|++|++..++|||| ||++| ++.+|++++..+...+ ...+||||||||||||+|||+||+|+|||||||+|+++
T Consensus 276 d~v~vpdf~~gaMEn~--glit~~e~~ll~d~~~s~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGFAty~e~ 353 (909)
T 4fke_A 276 DQIALPDFNAGAMENW--GLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEY 353 (909)
T ss_dssp EEEEETTCTTCEECCT--TEEEEEHHHHCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHH
T ss_pred cEEEecCCCCcccccC--cccccccceeecCcccCChHHHHHHHHHHHHHHHhhhhcCeecccccCcceeehHHHHHHHH
Confidence 9999999889999999 68999 5678999876544333 33589999999999999999999999999999999999
Q ss_pred HHHHHhhCchHHHHHH-HHhcccceeccc-CCCcccCCCCccccC-CCCcccccccceeeehHHHHHHHHHHhhCHHHHH
Q 004221 383 SFIKKFLGNNEARYRR-YKANCAVCKADD-SGATALSSSASCKDL-YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFR 459 (767)
Q Consensus 383 ~~~~~~~G~~~~~~~~-~~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~ 459 (767)
+++++..|.....-.. ..........+. ....++... ..++ .+.++..+|+.++|.||++|||||+..||++.|+
T Consensus 354 ~~~~~~~~~~~~~~~f~~~~~~~~~~~d~~~~~~pi~~~--~~~v~~~~~i~~~fd~i~Y~KGa~vL~mL~~~lG~e~F~ 431 (909)
T 4fke_A 354 LGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTP--AEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFK 431 (909)
T ss_dssp HHHHHHSTTSCGGGGHHHHTHHHHHHHHTSTTCCCSCCC--GGGCCSHHHHHTTSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhccccccHHHhhhhhHHHHHHHHhhhcccCCcccc--ccccCChhhHHhhhhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999998875431100 000000000111 111111100 0112 1235667899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCC-----cccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEee
Q 004221 460 KILQNIISRAQGASPVRTLSTKEFRHFANKVGNLE-----RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRD 534 (767)
Q Consensus 460 ~~L~~yl~~~~~~~~~~~~st~~f~~~~~~~~~~~-----~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~ 534 (767)
+||+.|+++|++++ ++++||++.++++++.. +.++++||++|++|+|+|+|+|+.+ .+ .++|+|+
T Consensus 432 ~gl~~Yl~~~~~~n----a~~~Dl~~~l~~~s~~~~~~~~~~~v~~~~~~W~~q~G~Pvv~V~~~----~~--~~~q~~~ 501 (909)
T 4fke_A 432 EGLASYLHAFAYQN----TTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTK----TG--NISQKHF 501 (909)
T ss_dssp HHHHHHHHHHTTEE----ECHHHHHHHHHHHHHTCSSCCCSSCHHHHHHHHHSSCSCEEEEEETT----TT--EEEEEEC
T ss_pred HHHHHHHHhhcccC----CCHHHHHHHHHHHhCcccccccchhHHhHhhCccccCCCcEEEEEec----cC--cEEEEEE
Confidence 99999999999996 68999998888876532 2469999999999999999999642 23 4678886
Q ss_pred ccCCCCCCCccccCCCCCCCCCCCCCcceeeEEEEeccCCcccccccccCCCcceeEeeeecccchhhhhcCCCCCCCCC
Q 004221 535 CTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPD 614 (767)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plti~~~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~~~~~~~~~~ 614 (767)
........ . .....+..|++|+++.. +|.... ..|. .+. ... . .
T Consensus 502 ~~~~~~~~------~---~~~~~~~~w~IPl~~~~---~~~~~~-------~~~~-~~~--~~~-------~----~--- 545 (909)
T 4fke_A 502 LLDSESNV------T---RSSAFDYLWIVPISSIK---NGVMQD-------HYWL-RDV--SQA-------Q----N--- 545 (909)
T ss_dssp CSCTTCCC------C---SCCTTTTCCCEEECEEE---TTEECC-------CEEE-CSC--SEE-------E----C---
T ss_pred EeccCCCC------C---CCCCCCceEEEEEEEEe---CCCccc-------eEEe-ecc--ccc-------e----e---
Confidence 54321100 0 01123457999998754 232111 0110 000 000 0 0
Q ss_pred CCCCCCCccccccccccCCCCeeEEEecCCCceeEEEeecCchHHH---HHHHcccCCh------HHHHHHHHHHHcCCC
Q 004221 615 GCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMW---INQLEKDGDV------VAQAQAIAALEALPH 685 (767)
Q Consensus 615 ~~~~~~d~~~~~~~~~~~~~~~~wir~d~~~~~~~~v~~~~~~~~~---~~qL~~d~dv------~aq~~a~~~l~~~~~ 685 (767)
+ + ....+.+||.+|+++.++||| +|++.+| +.+|+.+++. .+-++++.+|++.+.
T Consensus 546 ------~-~-------~~~~~~~wi~~N~~~~gyyRV--~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~ag~ 609 (909)
T 4fke_A 546 ------D-L-------FKTASDDWVLLNVNVTGYFQV--NYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHM 609 (909)
T ss_dssp ------G-G-------GCCCTTCCEEESGGGCSSCEE--EECHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTTS
T ss_pred ------e-e-------ccCCCCCeEEECCCceEEEEE--ecCHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 0 0 011235799999999999999 5555555 6788765543 345588899999988
Q ss_pred CchhHhhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 004221 686 LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (767)
Q Consensus 686 ~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~ 719 (767)
.+...+..|.+.|.+| .-|-|+..|...|..+.
T Consensus 610 ~~~~~~l~l~~~l~~E-~~y~~w~~~~~~l~~l~ 642 (909)
T 4fke_A 610 VPVTLALDNTLFLNGE-KEYMPWQAALSSLSYFS 642 (909)
T ss_dssp SCHHHHHHTTGGGGGC-CSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHH
Confidence 8888888889999988 46789999999888764
No 3
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=100.00 E-value=1.2e-82 Score=766.10 Aligned_cols=591 Identities=14% Similarity=0.204 Sum_probs=443.5
Q ss_pred CCCCCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCe---eeeeeeCCCCcccch
Q 004221 10 EETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE---PTEFEYYPHNHQNVE 85 (767)
Q Consensus 10 ~~~~~~~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~-~~~~~I~L~~~~l~I~~v~v~g~---~~~~~~~~~~~~~~~ 85 (767)
-..++....+.|.||+|+|++|+++.+|+|+|+|++.+ .+++.|.||+++|+|.+|+|+|. ++.+.....
T Consensus 4 ~~~~rLp~~~~p~hY~l~L~~d~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~v~~~~~~~~~~~~~~~------ 77 (897)
T 2xdt_A 4 WNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQV------ 77 (897)
T ss_dssp CCCSSCCSSEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCEEEEEEECSSCEEEEEEEEEC----CEEEECEE------
T ss_pred cccCcCCCCcEeeEEEEEEEEecCCCeEEEEEEEEEEEEcCCCEEEEEeCCCEEEEEEEEecCCccccccccee------
Confidence 34466778999999999999999999999999999987 46889999999999999999642 221111000
Q ss_pred hhhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcC-ceEEEEEEEEe
Q 004221 86 NEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVE 164 (767)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~-~~~~~~~y~~~ 164 (767)
........|.|.++. .++.|. .+++ .+.|+|.++.. .|+|++.|...
T Consensus 78 --------------------------~~~~~~~~l~i~l~~---~L~~g~-~~~L--~i~y~g~~~~~~~G~y~s~y~~~ 125 (897)
T 2xdt_A 78 --------------------------LEHPRQEQIALLAPE---PLLVGL-PYTV--VIHYAGNLSETFHGFYKSTYRTK 125 (897)
T ss_dssp --------------------------EEETTTTEEEEEEEE---EECTTC-CEEE--EEEEEEECBSSSSEEEEEEEECT
T ss_pred --------------------------EEcCCCcEEEEEeCC---ccCCCC-EEEE--EEEEEEEeCCCCceeEeeeeecC
Confidence 000011246676543 232222 2344 47899988654 59999998642
Q ss_pred cCCcceEEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEecCCCcc
Q 004221 165 KVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVS 244 (767)
Q Consensus 165 ~~~~G~~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s 244 (767)
+|. .+++++|||||.+||+||||+|+|+.||+|+|+|++|++|+|+|||+++++... ++++++++|..++|||
T Consensus 126 ---~g~--~~~~~~Tq~ep~~AR~~fPc~DeP~~Katf~itI~~p~~~~alSN~~~~~~~~~--~~g~~~~~f~~t~pms 198 (897)
T 2xdt_A 126 ---EGE--LRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTV--AEGLIEDHFDVTVKMS 198 (897)
T ss_dssp ---TSC--EEEEEEEECTTTTHHHHSCBCCSTTSCBEEEEEEEECTTCEEEESSCEEEEEEE--ETTEEEEEECCCCSBC
T ss_pred ---CCc--eeEEEEecceecccceEEeccCCccccCeEEEEEEEcCCceEecCCCccceEec--CCCEEEEEEeCCCccc
Confidence 342 246789999999999999999999999999999999999999999998875432 3578999999999999
Q ss_pred ceeeEEEEeeceEeec--CCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccc
Q 004221 245 AKWITLAVAPFEVLPD--HHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFG 322 (767)
Q Consensus 245 ~yliafavg~f~~~~~--~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~g 322 (767)
+|++||+||+|+.++. ..+.++++|++|+..++++++++.++++++||+++||+||||+|+++|++|++..++||||
T Consensus 199 tYL~a~~vg~f~~~~~~~~~gv~v~v~~~~~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~- 277 (897)
T 2xdt_A 199 TYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENW- 277 (897)
T ss_dssp GGGCCEEEECCEEEEEECTTCCEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHTTCCCCSSEEEEEEESSCSSSEECCT-
T ss_pred hhheEEEEEcceeeccccCCCeeEEEEcCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeEEEeCCCcccchhcC-
Confidence 9999999999999876 3357899999999999999999999999999999999999999999999998888999999
Q ss_pred cchhhhc-cccccCccccchhh--hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHH--HHH
Q 004221 323 AAMGIFS-SQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA--RYR 397 (767)
Q Consensus 323 agl~~~~-~~lL~~~~~~~~~~--~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~--~~~ 397 (767)
||++|+ +.+|++++..+... ....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|.... .|
T Consensus 278 -glit~~e~~ll~~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~f- 355 (897)
T 2xdt_A 278 -GLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF- 355 (897)
T ss_dssp -TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCGGGGH-
T ss_pred -CeeEEeeeeEeECCCCCcHHHHHHHHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHHhCCcchHHHHH-
Confidence 689995 56899987654332 234589999999999999999999999999999999999999998876432 12
Q ss_pred HHHhcccceecccC-CCcccCCCCccccC-CCCcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCC
Q 004221 398 RYKANCAVCKADDS-GATALSSSASCKDL-YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPV 475 (767)
Q Consensus 398 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~~~ 475 (767)
.......+..+.. ...|+ ..++ .+.++...|+.++|.||++|||||+..||++.|+++|+.|+++|++++
T Consensus 356 -~~~~~~a~~~D~~~~~~Pi-----~~~v~~p~~i~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~gl~~Yl~~~~~~~-- 427 (897)
T 2xdt_A 356 -FGKCFDAMEVDALNSSHPV-----STPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKN-- 427 (897)
T ss_dssp -HHHHHHHHHHHTSTTCCCS-----SCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTEE--
T ss_pred -HHHHHHHHHhhcccCCCCC-----EEeCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC--
Confidence 1111111111110 11111 1122 123455689999999999999999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHhcC---------------C-C--------cccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEE
Q 004221 476 RTLSTKEFRHFANKVGN---------------L-E--------RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAV 531 (767)
Q Consensus 476 ~~~st~~f~~~~~~~~~---------------~-~--------~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~ 531 (767)
++++||++.++++.. . + +.||++||++|++++|+|+++|+++ ++.+.|+|
T Consensus 428 --a~~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~dl~~~~~~W~~q~G~P~l~v~~~----~~~~~l~Q 501 (897)
T 2xdt_A 428 --TKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVR----GRNVHMKQ 501 (897)
T ss_dssp --ECHHHHHHHHHTC----------------------------CCCHHHHHHHHHSSCSEEEEEEEEE----TTEEEEEE
T ss_pred --CCHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCHHHHHHHhhcCCCceEEEEEEc----CCEEEEEE
Confidence 689999998887510 0 1 5799999999999999999999875 45678888
Q ss_pred EeeccCCCCCCCccccCCCCCCCCCCCCCcceeeEEEEeccCCcccccccccCCCcceeEeeeecccchhhhhcCCCCCC
Q 004221 532 LRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGS 611 (767)
Q Consensus 532 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plti~~~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~~~~~~~ 611 (767)
+|+..... ..+ .....|++|+++.... +.. .+. .| +...+. .
T Consensus 502 ~~f~~~~~--------~~~-----~~~~~w~iPi~~~~~~-~~~-~~~-------~~----l~~~~~----~-------- 543 (897)
T 2xdt_A 502 EHYMKGSD--------GAP-----DTGYLWHVPLTFITSK-SDM-VHR-------FL----LKTKTD----V-------- 543 (897)
T ss_dssp EEECCC------------------CCCCCCCEEEEEEESS-CSS-CEE-------EE----ECSSEE----E--------
T ss_pred EEeecCCC--------CCC-----CCCceEEEEEEEEeCC-CCc-cce-------EE----ecCCce----E--------
Confidence 88753211 000 1234799999986421 111 111 11 110000 0
Q ss_pred CCCCCCCCCCccccccccccCCCCeeEEEecCCCceeEEEeecCch-HHHHHHHcccC---ChHH---HHHHHHHHHcCC
Q 004221 612 KPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPV-QMWINQLEKDG---DVVA---QAQAIAALEALP 684 (767)
Q Consensus 612 ~~~~~~~~~d~~~~~~~~~~~~~~~~wir~d~~~~~~~~v~~~~~~-~~~~~qL~~d~---dv~a---q~~a~~~l~~~~ 684 (767)
+ ....+.+||.+|+++.++|||+++... ..++.+|..++ +++. -++++.+|++.+
T Consensus 544 -----------~-------~~~~~~~~i~~N~~~~gyyrV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g 605 (897)
T 2xdt_A 544 -----------L-------ILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIG 605 (897)
T ss_dssp -----------E-------ECSSCCSCEEESGGGCSSCEEEECTTHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHTTT
T ss_pred -----------E-------EccCCCceEEECCCceEEEEEEcCHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHcC
Confidence 0 011245799999999999999666432 23467887655 4433 358889999988
Q ss_pred CCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 004221 685 HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (767)
Q Consensus 685 ~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~ 719 (767)
..+......|.+.|.+| .-|.|+..|...|..+.
T Consensus 606 ~~~~~~~l~l~~~l~~E-~~~~~w~~~~~~l~~l~ 639 (897)
T 2xdt_A 606 KLSIEKALDLSLYLKHE-TEIMPVFQGLNELIPMY 639 (897)
T ss_dssp SSCHHHHHHHHGGGGGC-CCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHH
Confidence 88888888889999988 47888888888887654
No 4
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=100.00 E-value=2.1e-80 Score=731.52 Aligned_cols=545 Identities=13% Similarity=0.130 Sum_probs=418.2
Q ss_pred CCCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcC-CcceEEEeccCceeeEEEEcCeeee----eeeCCCCcccchh
Q 004221 12 TKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE----FEYYPHNHQNVEN 86 (767)
Q Consensus 12 ~~~~~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~~-~~~~I~L~~~~l~I~~v~v~g~~~~----~~~~~~~~~~~~~ 86 (767)
+..+++++.+.||+|+|++|+++..++|+++|++.+. +++.|.||+++|+|++|+|||+++. |.+.+
T Consensus 7 ~dy~~~~~~V~h~~L~l~ld~~~~~v~G~~~i~~~~~~~~~~l~LD~~~L~I~sV~vnG~~l~~~~~~~~~~-------- 78 (889)
T 3ebh_A 7 KDYKPSGFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISINNKKLVEGEEYTYDN-------- 78 (889)
T ss_dssp GGCCCCSEEEEEEEEEEEECSSCEEEEEEEEEEECTTCCSCCEEEECCSCEEEEEEETTEECCBTTTEEECS--------
T ss_pred CCCCCCCcEEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCceEEEECCCCEEEEEEECCEEcCcccceEecC--------
Confidence 4467889999999999999999999999999998764 4789999999999999999998753 43321
Q ss_pred hhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcCceEEEEEEEEecC
Q 004221 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKV 166 (767)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~~~~y~~~~~ 166 (767)
..|.|.++. ++. +.+++. +.|+|.+.... .
T Consensus 79 -------------------------------~~L~I~l~~----l~~--~~~~l~--I~y~~~p~~~~-----------~ 108 (889)
T 3ebh_A 79 -------------------------------EFLTIFSKF----VPK--SKFAFS--SEVIIHPETNY-----------A 108 (889)
T ss_dssp -------------------------------SEEEECGGG----SCS--SSEEEE--EEEEECGGGCT-----------T
T ss_pred -------------------------------CEEEEecCC----CCC--CcEEEE--EEEEecCccCC-----------C
Confidence 136664431 111 112222 44444432110 0
Q ss_pred CcceEEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCC-e-EEEEeCcccceeeccCCCCceEEEEecCCCcc
Q 004221 167 EVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVS 244 (767)
Q Consensus 167 ~~G~~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~-~-~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s 244 (767)
-.|+++.+.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++... ++++++++|..++|||
T Consensus 109 l~Gly~s~~~~~TQ~Ep~~AR~~fPC~DeP~~KAtf~itIt~p~~~~~valSNg~l~~~~~~--~~g~~~~~f~~t~pms 186 (889)
T 3ebh_A 109 LTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEI--PGGRHGARFNDPPLKP 186 (889)
T ss_dssp CSEEEEETTEEEEECTTTTGGGTSCBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEEE--TTTEEEEEEEEEEEEC
T ss_pred ceeeEEECCeEEEcccCCCCCEEEEEcCCCCcceEEEEEEEEccccCeEEEccCccccceec--CCCeEEEEEecCCccc
Confidence 124444445789999999999999999999999999999999997 8 57999999876532 4578899999999999
Q ss_pred ceeeEEEEeeceEeecC-----CC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCccc
Q 004221 245 AKWITLAVAPFEVLPDH-----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVS 317 (767)
Q Consensus 245 ~yliafavg~f~~~~~~-----~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~ 317 (767)
+|++||+||+|++++.. .+ +++++|++|+..+.++++++.++++|+|||++||+||||+||++|++|++..++
T Consensus 187 tYLvA~~vG~f~~~~~~~~t~~~G~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~kyd~VavPdF~~Ga 266 (889)
T 3ebh_A 187 CYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGA 266 (889)
T ss_dssp GGGCCEEEECEEEEEEEEECSSSCCEEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSE
T ss_pred hhheeeEEecceEEeeeeeecCCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCCCceEEEEeccccchh
Confidence 99999999999988642 22 468999999999999999999999999999999999999999999999888899
Q ss_pred ccccccchhhh-ccccccCccccc-hhh-hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHH
Q 004221 318 SSTFGAAMGIF-SSQILYDEKVID-QAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA 394 (767)
Q Consensus 318 ~~~~gagl~~~-~~~lL~~~~~~~-~~~-~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~ 394 (767)
|||| ||++| +..+|+++.... ... ....+||||+|||||||+|||+||+|+|||||||+|++.++.++..|....
T Consensus 267 MEN~--GLvtf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~ 344 (889)
T 3ebh_A 267 MENK--GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTT 344 (889)
T ss_dssp ECCT--TEEEEEGGGTCCCTTTSCTHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHHCCTHH
T ss_pred hcCC--ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHhcCHHHH
Confidence 9999 68899 556888876532 222 234589999999999999999999999999999999999999998887754
Q ss_pred HHHHHHhcccceecccCCCcccCCCCccccCCC---CcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 004221 395 RYRRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQG 471 (767)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~ 471 (767)
++.............+. .+..+++.+ .++...|+.++|.||++|||||+..||++.|+++|+.|+++|++
T Consensus 345 r~~~~~~lr~~~~~~D~-------~~~shPI~~~~~~ei~~~f~~i~Y~KGa~vLrML~~~lGde~F~~gLr~Yl~~~~~ 417 (889)
T 3ebh_A 345 RLSHVDLLRSVQFLEDS-------SPLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDG 417 (889)
T ss_dssp HHHHHHHHHHHHHHHHT-------STTCCCSSCSEESCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhhcc-------CccCCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCC
Confidence 43322111100001111 122233322 34567899999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcC----CCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEeeccCCCCCCCcccc
Q 004221 472 ASPVRTLSTKEFRHFANKVGN----LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLS 547 (767)
Q Consensus 472 ~~~~~~~st~~f~~~~~~~~~----~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~ 547 (767)
++ ++++||++.+++++. ..|.||.. |++|++++|+|+|+|+.+|+.+++.++|+|+|......
T Consensus 418 ~n----att~Df~~ale~as~~~~~~~g~dL~~-f~~Wl~q~G~P~l~V~~~~d~~~~~~~ltl~Q~~~~~~-------- 484 (889)
T 3ebh_A 418 NT----ATCEDFNYAMEQAYKMKKADNSANLNQ-YLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDE-------- 484 (889)
T ss_dssp SE----ECHHHHHHHHHHHHHHHHTCTTCCCTG-GGHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCCS--------
T ss_pred CC----CCHHHHHHHHHHHhhhccCCCCCCHHH-HHHHhcCCCCceEEEEEeecCCCCEEEEEEEEecCCCC--------
Confidence 96 699999999988860 01357886 68999999999999999999877888888888653210
Q ss_pred CCCCCCCCCCCCCcceeeEEEEecc-CCccc--ccccccCCCcceeEeeeecccchhhhhcCCCCCCCCCCCCCCCCccc
Q 004221 548 SNTDSENRDGDIGWPGMMSIRVHEL-DGMYD--HPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVA 624 (767)
Q Consensus 548 ~~~~~~~~~~~~~~~~plti~~~e~-dg~~~--~~~~~~~~~~~~~~~i~~~~k~~~~r~~~~~~~~~~~~~~~~~d~~~ 624 (767)
.......|.+|++|.+... +|.-. ..++.+. +.-+.+.++
T Consensus 485 ------~~~~~~~~~IPl~v~l~~~~~G~~~~~~~~l~l~-~~~q~f~~~------------------------------ 527 (889)
T 3ebh_A 485 ------NQKEKKPLFIPISVGLINPENGKEMISQTTLELT-KESDTFVFN------------------------------ 527 (889)
T ss_dssp ------SCSSCCCCCEEEEEEEECTTTCCBCSCCEEEEEC-SSEEEEEES------------------------------
T ss_pred ------CCCCCceEEEEEEEEEEeCCCCccccceeEEEec-CCcEEEEEc------------------------------
Confidence 0012347999999999876 77521 1111111 111112221
Q ss_pred cccccccCCCCeeEEEecCCCceeEEEeecCchHHHHHHHcccCChHHHHHHHHHHHc
Q 004221 625 GLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (767)
Q Consensus 625 ~~~~~~~~~~~~~wir~d~~~~~~~~v~~~~~~~~~~~qL~~d~dv~aq~~a~~~l~~ 682 (767)
...+. -|+.+|+++...+++++++++++++.||.+|.|..+|.+|++.|+.
T Consensus 528 ------~~~~~-p~~sl~r~fsa~v~l~~~~~~~~l~~l~~~d~d~~~r~~a~~~l~~ 578 (889)
T 3ebh_A 528 ------NIAVK-PIPSLFRGFSAPVYIEDQLTDEERILLLKYDSDAFVRYNSCTNIYM 578 (889)
T ss_dssp ------CCCSC-CEEEESTTCCSSSEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ------CCCCC-CeEEEcCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 00111 2558999999999999999999999999999999999999988863
No 5
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=100.00 E-value=4.9e-80 Score=733.49 Aligned_cols=566 Identities=16% Similarity=0.190 Sum_probs=426.4
Q ss_pred CCCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEeccCceeeEEEEcCeee-eeeeCCCCcccchhhhhc
Q 004221 12 TKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPT-EFEYYPHNHQNVENEKRW 90 (767)
Q Consensus 12 ~~~~~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~~~~~~I~L~~~~l~I~~v~v~g~~~-~~~~~~~~~~~~~~~~~~ 90 (767)
+....+++.+.||+|+++++++...++|+++|++...+++.|.||+++|+|.+|++||+++ .|...+.
T Consensus 32 ~~y~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~l~Ld~~~L~I~sV~v~G~~l~~y~~~~~----------- 100 (891)
T 3b34_A 32 HDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEG----------- 100 (891)
T ss_dssp GGCCCCSEEEEEEEEEEECCSSCEEEEEEEEEEECSCTTCCEEEECSSCEEEEEEETTEECCSEEEETT-----------
T ss_pred hhCCCCCceeEEEEEEEEEECCceEEEEEEEEEEccCCCCEEEEECCCCEEEEEEEcCEEcceEEeeCC-----------
Confidence 5567789999999999999999999999999987654567899999999999999999887 5554321
Q ss_pred cccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcCceEEEEEEEEecCCcce
Q 004221 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGI 170 (767)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~~~~y~~~~~~~G~ 170 (767)
.|.|. .++ +.++++ +.|++.+... ....|+
T Consensus 101 ----------------------------~L~I~------~lp---~~~~l~--I~y~~~p~~~-----------~~l~Gl 130 (891)
T 3b34_A 101 ----------------------------ALVIS------NLP---ERFTLK--IINEISPAAN-----------TALEGL 130 (891)
T ss_dssp ----------------------------EEEEC------SCC---SEEEEE--EEEEECGGGC-----------CSCCEE
T ss_pred ----------------------------EEEEE------eCC---CeEEEE--EEEEEeeccc-----------CCCceE
Confidence 35653 011 012333 4444433211 011233
Q ss_pred EEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCC-e-EEEEeCcccceeeccCCCCceEEEEecCCCccceee
Q 004221 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248 (767)
Q Consensus 171 ~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~-~-~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~yli 248 (767)
++.+.+++|||||.+||+||||+|+|+.||+|+|+|++|++ | +++|||+++++.. .++++++++|..++|||+|++
T Consensus 131 y~s~~~~~Tq~Ep~~AR~~fPc~DeP~~kAtf~itI~~p~~~y~~alSNg~l~~~~~--~~~g~~~~~f~~t~pmstYL~ 208 (891)
T 3b34_A 131 YQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGE--LENGRHWVQWQDPFPKPCYLF 208 (891)
T ss_dssp EEETTEEEEECTTTTGGGTSSBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--CSTTEEEEEEEEEEEECGGGC
T ss_pred EEeCCEEEeccccCCCCccccCCCCcccceEEEEEEEeccccceEEEeCCcccccee--ecCCeEEEEEEeCCCccceee
Confidence 33345789999999999999999999999999999999997 6 9999999987653 246788999999999999999
Q ss_pred EEEEeeceEeecC----C--CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccc
Q 004221 249 TLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFG 322 (767)
Q Consensus 249 afavg~f~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~g 322 (767)
||+||+|++++.. . +.++++|++|+..+.++++++.++++++|||++||+||||++|++|++|++..++||||
T Consensus 209 A~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~diVavPdf~~GaMEn~- 287 (891)
T 3b34_A 209 ALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENK- 287 (891)
T ss_dssp CEEEECCEEEEEEEECTTCCEEEEEEEECTTCGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEECCT-
T ss_pred EEEeccceEEeeeeeccCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCcCccccC-
Confidence 9999999998752 1 25799999999999999999999999999999999999999999999999888999999
Q ss_pred cchhhh-ccccccCccccch-hh-hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHH
Q 004221 323 AAMGIF-SSQILYDEKVIDQ-AI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY 399 (767)
Q Consensus 323 agl~~~-~~~lL~~~~~~~~-~~-~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~ 399 (767)
||++| +..+|+++..... .. ....+||||+|||||||+|||+||+|+|||||||+|++.++.++..|....++...
T Consensus 288 -GLitf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~~~~~~ 366 (891)
T 3b34_A 288 -GLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNV 366 (891)
T ss_dssp -TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 68888 4568888765432 22 23458999999999999999999999999999999999999988877554333221
Q ss_pred HhcccceecccCCCcccCCCCccccCCC---CcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCC
Q 004221 400 KANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVR 476 (767)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~~~~ 476 (767)
..........+ +.+..+|+.+ .++...|+.++|.||++|||||+..||++.|+++|+.|+++|++++
T Consensus 367 ~~l~~~~~~~D-------~~~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~VLrML~~~lG~e~F~~gLr~Yl~~~~~~~--- 436 (891)
T 3b34_A 367 RTMRGLQFAED-------ASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSA--- 436 (891)
T ss_dssp HHHHHTHHHHH-------TSTTCCCSSCSEESCGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE---
T ss_pred HHHHHhhhhhh-------ccccCCCCccccccccccccccchhhHHHHHHHHHHHHHCHHHHHHHHHHHHHhccCCC---
Confidence 11110000111 1112223322 3456678999999999999999999999999999999999999985
Q ss_pred CCCHHHHHHHHHHhcCCCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEeeccCCCCCCCccccCCCCCCCCC
Q 004221 477 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRD 556 (767)
Q Consensus 477 ~~st~~f~~~~~~~~~~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~ 556 (767)
++++||++.+++++| .||++| ++|++++|+|+++|+..|+.+++.++++++|..... +. ..
T Consensus 437 -att~Df~~ale~~sg---~dL~~f-~~W~~q~G~P~l~V~~~~~~~~~~~~ltl~Q~~~~~-----------~~---~~ 497 (891)
T 3b34_A 437 -ATCDDFVQAMEDASN---VDLSHF-RRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPAT-----------PD---QA 497 (891)
T ss_dssp -ECHHHHHHHHHHHHC---CCCTTT-THHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCB-----------TT---BS
T ss_pred -CCHHHHHHHHHHHhC---CCHHHH-HHHHcCCCCceEEEEEEeecCCCEEEEEEEEecCCC-----------CC---CC
Confidence 799999999999885 578884 799999999999999999877777777777753210 00 01
Q ss_pred CCCCcceeeEEEEeccCCcccccccccCCCc-ceeEeeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCC
Q 004221 557 GDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESP 635 (767)
Q Consensus 557 ~~~~~~~plti~~~e~dg~~~~~~~~~~~~~-~~~~~i~~~~k~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 635 (767)
....|++|+++.+...+|... .+. +.+.. ...+.+ +++ +.... +. .. ..
T Consensus 498 ~~~~~~iPi~v~l~~~~G~~~-~~~-~~~~~~~~~~~l--~~~------------------~~~~~-~~------~v-~~ 547 (891)
T 3b34_A 498 EKQPLHIPFAIELYDNEGKVI-PLQ-KGGHPVNSVLNV--TQA------------------EQTFV-FD------NV-YF 547 (891)
T ss_dssp CCCCCCEEEEEEEECTTSCBC-CCE-ETTEECCSEEEE--CSS------------------EEEEE-EC------CC-CS
T ss_pred CCceEEEEEEEEEEcCCCCcc-ccc-ccccccceEEEe--cCC------------------cEEEE-Ec------cC-CC
Confidence 234799999999998777621 110 01100 000111 000 00000 00 01 11
Q ss_pred eeEEEecCCCceeEEEeecCchHHHHHHHcccCChHHHHHHHHHHHcC-------------C-CCchhHhhHHHHhhccC
Q 004221 636 LSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL-------------P-HLSFNVVNTLNNFLSDS 701 (767)
Q Consensus 636 ~~wir~d~~~~~~~~v~~~~~~~~~~~qL~~d~dv~aq~~a~~~l~~~-------------~-~~s~~~~~~L~~~l~~~ 701 (767)
-.||++|+++.++++|++++++++|+.||++|+|+++|.+|++.|++. + ..+...+.++..+|.|+
T Consensus 548 ~P~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 627 (891)
T 3b34_A 548 QPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDE 627 (891)
T ss_dssp CCEEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHCS
T ss_pred CCcEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCcCccHHHHHHHHHHhcCC
Confidence 238999999999999999999999999999999999999999888753 1 12345677888888764
No 6
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=100.00 E-value=3.5e-81 Score=743.11 Aligned_cols=543 Identities=15% Similarity=0.204 Sum_probs=425.4
Q ss_pred eEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhccccCCCCC
Q 004221 19 AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPS 98 (767)
Q Consensus 19 ~~~~hy~l~L~id~~~~~~~G~v~i~i~~~~~~~I~L~~~~l~I~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (767)
+.|.||+|+|++|+++.+|+|+|+| . .+++.|.||+++|+|++|+++|+++.+.+++.
T Consensus 1 v~p~hY~l~l~~~~~~~~f~G~v~I--~-~~~~~i~L~~~~l~I~~v~~~g~~~~~~~~~~------------------- 58 (780)
T 1z5h_A 1 MEVEKYDLTLDFDIQKRTFNGTETI--T-ADAGDIVLDAVGLQINWMKVNGRDTAFTYDGQ------------------- 58 (780)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEEEE--E-ECSSCEEEECSSCEEEEEEETTEECCCEECSS-------------------
T ss_pred CEEEEEEEEEEEECCCCEEEEEEEE--E-cCCCEEEEEccCCEEEEEEEeceeccEEEECC-------------------
Confidence 4699999999999999999999999 4 66789999999999999999998887765521
Q ss_pred chHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcC-ceEEEEEEEEecCCcceEEEcceE
Q 004221 99 SAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVGIHFDGNAL 177 (767)
Q Consensus 99 ~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~-~~~~~~~y~~~~~~~G~~f~~~~~ 177 (767)
.|.|.++ + | .+++ .+.|+|.++.. .|+|++.|. ++++
T Consensus 59 --------------------~l~i~~~-~------g--~~~l--~i~y~g~~~~~~~G~y~~~y~-----------~~~~ 96 (780)
T 1z5h_A 59 --------------------TVRAPGD-S------Q--PQKI--EISFAGKVSDSLSGIYYAGRE-----------NGMI 96 (780)
T ss_dssp --------------------EEEECCC-S------S--SEEE--EEEEEEECBSSSSEEEEESST-----------TCEE
T ss_pred --------------------EEEEEeC-C------c--cEEE--EEEEEEEeCCCcccceecccc-----------ceEE
Confidence 3566442 1 1 2333 36788877654 478776542 4688
Q ss_pred eccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEecCCCccceeeEEEEeeceE
Q 004221 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEV 257 (767)
Q Consensus 178 ~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliafavg~f~~ 257 (767)
+|||||.+||+||||||+|+.||+|+|+|++|++|+|+|||++.++. .+++++++|..++|||+|++||+||+|+.
T Consensus 97 ~Tq~ep~~AR~~fPc~DeP~~Katf~iti~~p~~~~~lSN~~~~~~~----~~g~~~~~f~~t~~mstYL~a~~vg~f~~ 172 (780)
T 1z5h_A 97 TTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIE----VSERKVVEFQDTPRMSTYLLYVGIGKFRY 172 (780)
T ss_dssp EEECTTTCGGGTSCBCCCTTSCBEEEEEEEECTTCEEEESSCEEEEE----ESSSEEEEECCCCSBCGGGCCEEEECCEE
T ss_pred EEccccCChhheeecCCCcccccEEEEEEEECCCCEEEeCCcccccc----CCCceEEEEecCCcccceEEEEEEeccEE
Confidence 99999999999999999999999999999999999999999987641 35788999999999999999999999999
Q ss_pred eecCC-CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchhhh-ccccccC
Q 004221 258 LPDHH-QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYD 335 (767)
Q Consensus 258 ~~~~~-~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~gagl~~~-~~~lL~~ 335 (767)
++... +.++++|++|+ ++++++++.+++++++|+++||+||||+||++|++|++..++|||| |+++| ++.+|++
T Consensus 173 ~~~~~~gv~~~v~~~~~--~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~--glit~~e~~ll~~ 248 (780)
T 1z5h_A 173 EYEKYRDIDLILASLKD--IRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENW--GAITFREIYMDIA 248 (780)
T ss_dssp EEEEETTEEEEEEESSC--CCCSHHHHHHHHHHHHHHHHHSSCCSSSEEEEEEETTCTTCEECCT--TEEEEEHHHHSCC
T ss_pred EeeccCCeeEEEEEccc--hhHHHHHHHHHHHHHHHHHHhCCCCCCccCCEEEcCCCCCCccccc--CeeEeecceEeec
Confidence 87543 57899999999 6778999999999999999999999999999999998878999999 68888 4568888
Q ss_pred ccccchh-hhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHHH--hcccceecccC-
Q 004221 336 EKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK--ANCAVCKADDS- 411 (767)
Q Consensus 336 ~~~~~~~-~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~--~~~~~~~~~~~- 411 (767)
+...... .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|+..+ +..+. .....+..+..
T Consensus 249 ~~~~~~~~~~~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~~~~~~~~-~~~f~~~~~~~al~~D~~~ 327 (780)
T 1z5h_A 249 ENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSF-WGDFFVSRTSGALRSDSLK 327 (780)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHCTTTCH-HHHHHHHTHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHHHhhcc
Confidence 3322221 2234589999999999999999999999999999999999999999888653 11110 00001111111
Q ss_pred CCcccCCCCccccC-CCCcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHh
Q 004221 412 GATALSSSASCKDL-YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV 490 (767)
Q Consensus 412 ~~~~l~~~~~~~~~-~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~~~ 490 (767)
...++ ..++ .+.++..+|+.++|.||++|||||+..||++.|+++|+.|+++|++++ ++++||++.++++
T Consensus 328 ~~~pi-----~~~v~~~~~~~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~----~t~~Dl~~~l~~~ 398 (780)
T 1z5h_A 328 NTHPI-----EVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGN----AEGSDLWTAIEDV 398 (780)
T ss_dssp TCCCS-----CCCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHH
T ss_pred CCCCc-----eecCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC----CCHHHHHHHHHHH
Confidence 11111 1122 234556789999999999999999999999999999999999999986 6999999999998
Q ss_pred cCCCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCCcceeeEEEEe
Q 004221 491 GNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVH 570 (767)
Q Consensus 491 ~~~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plti~~~ 570 (767)
++ .||++||++|++++|+|+++|+++ ++.+.|+|+|+.... +....|++|+++ ..
T Consensus 399 sg---~dl~~~~~~W~~~~G~P~l~v~~~----~~~~~l~Q~~f~~~~-----------------~~~~~w~iPi~~-~~ 453 (780)
T 1z5h_A 399 SG---KPVKRVMEYWIKNPGYPVIKLKRN----GRKITMYQTRFLLNG-----------------EEEGRWPVPVNI-KK 453 (780)
T ss_dssp HC---SCHHHHHHHHHHSCSCEEEEEEES----SSEEEEEEEECCSSC-----------------CEECCCCEEEEE-EE
T ss_pred hC---CCHHHHHHHHHhCCCCceEEEEec----CcEEEEEEEEecCCC-----------------CCCceEEEEEEE-cC
Confidence 74 589999999999999999999872 456788888764310 112479999999 32
Q ss_pred ccCCcccccccccCCCcceeEeeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCeeEEEecCCCceeEE
Q 004221 571 ELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAE 650 (767)
Q Consensus 571 e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir~d~~~~~~~~ 650 (767)
+|. .+. . + ..+ . + . .+.. +||.+|+++.++||
T Consensus 454 --~~~-~~~-----------~-l--~~~----------~-------------~-~------~~~~-~~i~~N~~~~gyyr 485 (780)
T 1z5h_A 454 --KDG-VER-----------I-L--LED----------E-------------A-S------IEAD-GLIKINADSAGFYR 485 (780)
T ss_dssp --TTE-EEE-----------E-E--ECS----------S-------------E-E------EECT-TEEEESGGGCSSSE
T ss_pred --CCc-eee-----------e-c--cCc----------e-------------E-E------ccCC-ceEEEeCCCCEEEE
Confidence 332 110 1 1 110 0 0 0 0112 79999999999999
Q ss_pred EeecCchHHHH---HHHcccCChHHH---HHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhcc
Q 004221 651 IHFNQPVQMWI---NQLEKDGDVVAQ---AQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (767)
Q Consensus 651 v~~~~~~~~~~---~qL~~d~dv~aq---~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~ 720 (767)
| +|++.+|. .+| ..-++..| ++++.+|++.+..+......|.+.|.+| ..|.|+..|+..|..+..
T Consensus 486 v--~Yd~~~~~~l~~~l-~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E-~~~~~w~~~~~~l~~~~~ 557 (780)
T 1z5h_A 486 V--LYDDATFSDVMGHY-RDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDD-EDHNVITAIVGQMEYLRM 557 (780)
T ss_dssp E--ECCHHHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTC-CCHHHHHHHHHHHHHHHT
T ss_pred E--ECCHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHh
Confidence 9 66677774 445 23466555 6889999988888888888889999888 589999999999887654
No 7
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=100.00 E-value=8.6e-77 Score=708.20 Aligned_cols=578 Identities=14% Similarity=0.126 Sum_probs=423.5
Q ss_pred CCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhccccC
Q 004221 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMV 94 (767)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~~~~~~I~L~~~~l~I~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (767)
..+++.+.||+|++++++++..++|+++|+... +++.|.||+++ +|++|++||+++.|..++.
T Consensus 12 ~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~-~~~~i~Ld~~~-~I~sv~v~g~~~~~~~~~~--------------- 74 (867)
T 2gtq_A 12 QTPAYHILKTDLHFDINEPQTVVKSRLTVEPQR-VGEPLVLDGSA-KLLSVKINGAAADYVLEGE--------------- 74 (867)
T ss_dssp CCCSEEEEEEEEEEEECSSCEEEEEEEEEEESS-TTSCEEEECCS-EEEEEEETTEECCCEEETT---------------
T ss_pred CCCCCceeEEEEEEEEECCcEEEEEEEEEEEeC-CCCEEEEecCC-CEEEEEECCeecceEeeCC---------------
Confidence 446889999999999999989999988887643 36789999999 9999999998877664421
Q ss_pred CCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcCceEEEEEEEEecCCcceEEEc
Q 004221 95 SSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG 174 (767)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~~~~y~~~~~~~G~~f~~ 174 (767)
.|.|. .++.+ .+++. +.|++.+... .+..|+++.+
T Consensus 75 ------------------------~L~I~------~lp~g--~~~l~--I~y~~~p~~~-----------~~~~Gly~s~ 109 (867)
T 2gtq_A 75 ------------------------TLTIA------GVPSE--RFTVE--VETEILPAEN-----------KSLMGLYASG 109 (867)
T ss_dssp ------------------------EEEES------CCCSS--CEEEE--EEEEECGGGC-----------CSCSEEEEET
T ss_pred ------------------------EEEEE------ecCCC--cEEEE--EEEEEeccCC-----------CCCcEEEEEC
Confidence 35553 01111 23333 3343332210 0112333334
Q ss_pred ceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCC-e-EEEEeCcccceeeccCCCCceEEEEecCCCccceeeEEEE
Q 004221 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAV 252 (767)
Q Consensus 175 ~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~-~-~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliafav 252 (767)
.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|+.++|||+|++||+|
T Consensus 110 ~~~~Tq~ep~~AR~~fPc~DeP~~katf~itIt~p~~~y~~~lSNg~l~~~~~--~~~g~~~~~f~~t~pmstYL~A~~v 187 (867)
T 2gtq_A 110 GNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDGGE--FSDGRHWVKWEDPFSKPSYLFALVA 187 (867)
T ss_dssp TEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEEETTTCCEEEESSEEEEEEE--CTTSEEEEEEECCSCBCGGGCCEEE
T ss_pred CEEEEeeccCCCceeeccCCCCCcceEEEEEEEEccccceEEEeCCcccccee--ecCCeEEEEEEeCCCccccceeEEE
Confidence 5789999999999999999999999999999999997 6 9999999987653 2467889999999999999999999
Q ss_pred eeceEeecC----C--CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcccccccccchh
Q 004221 253 APFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMG 326 (767)
Q Consensus 253 g~f~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~~~~~~gagl~ 326 (767)
|+|+.++.. . +.++++|++|+..+.++++++.++++++|||++||+||||++|++|++|++..++|||| ||+
T Consensus 188 G~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~d~Vavpdf~~GaMEn~--gli 265 (867)
T 2gtq_A 188 GDLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENK--GLN 265 (867)
T ss_dssp ECCEEEEEEEECTTSCEEEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESSCSSSEECCT--TEE
T ss_pred ecceEeeeceeccCCCceEEEEEeccccHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCccccccC--Cce
Confidence 999988752 1 25799999999999999999999999999999999999999999999999888999999 688
Q ss_pred hh-ccccccCccccchh-h-hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 004221 327 IF-SSQILYDEKVIDQA-I-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANC 403 (767)
Q Consensus 327 ~~-~~~lL~~~~~~~~~-~-~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~ 403 (767)
+| ++.+|++++..... . ....+||||+|||||||+|||+||+|+|||||||+|++.++.++..|....++.......
T Consensus 266 tf~e~~ll~~~~~~~~~~~~~i~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~l~ 345 (867)
T 2gtq_A 266 IFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLR 345 (867)
T ss_dssp EEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred eecccccccCcccCcHHHHHHHHHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 89 55688887654322 2 234589999999999999999999999999999999999999888775433222111110
Q ss_pred cceecccCCCcccCCCCccccCC---CCcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCCCCH
Q 004221 404 AVCKADDSGATALSSSASCKDLY---GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLST 480 (767)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~~~~~~st 480 (767)
......+.+ +..+|+. ..++...|+.++|.||++|||||+..||++.|+++|+.|+++|++++ +++
T Consensus 346 ~~~~~~D~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~glr~Yl~~~~~~~----~t~ 414 (867)
T 2gtq_A 346 QHQFPEDAG-------PTAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLGEEGFQKGMKLYFQRHDGQA----VTC 414 (867)
T ss_dssp HHHHHHHHS-------TTCCCSSCSEESCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE----ECH
T ss_pred HHhhhhccC-------ccCCCCcCCChhhhhhhccchhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhCCCC----CCH
Confidence 000011111 1122222 13456678999999999999999999999999999999999999986 799
Q ss_pred HHHHHHHHHhcCCCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCC
Q 004221 481 KEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIG 560 (767)
Q Consensus 481 ~~f~~~~~~~~~~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (767)
+||++.+++++| .|+.+| ++|++++|+|+++|+..|+. +.++++++|..... .+ ......
T Consensus 415 ~Df~~~l~~~sg---~dl~~f-~~W~~q~G~P~l~v~~~~~~--~~~~l~l~Q~~~~~------~~--------~~~~~~ 474 (867)
T 2gtq_A 415 DDFRAAMADANG---INLDQF-ALWYSQAGTPVLEAEGRLKN--NIFELTVKQTVPPT------PD--------MTDKQP 474 (867)
T ss_dssp HHHHHHHHHHHT---CCCGGG-GHHHHCCSCCEEEEEEEEET--TEEEEEEEEECCCB------TT--------BSCCCC
T ss_pred HHHHHHHHHHhC---CCHHHH-HHHhcCCCCceEEEEEEecC--CEEEEEEEEecCCC------CC--------CCCCce
Confidence 999999999885 588886 79999999999999998853 44555555543210 00 012347
Q ss_pred cceeeEEEEeccCCcccccccccCCCc--ceeEeeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCeeE
Q 004221 561 WPGMMSIRVHELDGMYDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSW 638 (767)
Q Consensus 561 ~~~plti~~~e~dg~~~~~~~~~~~~~--~~~~~i~~~~k~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~w 638 (767)
|++|+++.+...+|.. +... +.+.. ...+.+ +.+. + . .. +. .. ..--|
T Consensus 475 ~~iPi~~~~~~~~g~~-~~~~-~~~~~~~~~~~~l--~~~~-----~---~----------~~-~~------~~-~~~p~ 524 (867)
T 2gtq_A 475 MMIPVKVGLLNRNGEA-VAFD-YQGKRATEAVLLL--TEAE-----Q---T----------FL-LE------GV-TEAVV 524 (867)
T ss_dssp CCEEEEEEEECTTCCB-CCEE-CSSCEESCEEEEE--CSSE-----E---E----------EE-EB------CC-CSCCE
T ss_pred EEEEEEEEEEcCCCcc-cccc-cccccccceEEEE--cCCc-----e---E----------EE-Ee------CC-CCCCc
Confidence 9999999998777752 1110 11110 000111 0000 0 0 00 00 00 11237
Q ss_pred EEecCCCceeEEEeecCchHHHHHHHcccCChHHHHHHHHHHHcC-----------CCC---chhHhhHHHHhhccCcch
Q 004221 639 IRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL-----------PHL---SFNVVNTLNNFLSDSKAF 704 (767)
Q Consensus 639 ir~d~~~~~~~~v~~~~~~~~~~~qL~~d~dv~aq~~a~~~l~~~-----------~~~---s~~~~~~L~~~l~~~~~f 704 (767)
+.+|+++...++|++++++++|..+|.++.|.++|.+|++.|++. +.. ....+.++..++.|+.--
T Consensus 525 ~~l~r~fs~~~~l~~~~~~~~l~~l~~~~~d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 604 (867)
T 2gtq_A 525 PSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTLYRRAVAANLATLSDGVELPKHEKLLAAVEKVISDDLLD 604 (867)
T ss_dssp EEESTTCCSSCEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHCSSSC
T ss_pred eEecCCCCccEEEECCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999886555431 111 334566667777676557
Q ss_pred hHHHHHHHH--HHHhhc
Q 004221 705 WRVRIEAAY--ALANTA 719 (767)
Q Consensus 705 ~~vr~~Aa~--~L~~~~ 719 (767)
+.|+.++.. .++.+.
T Consensus 605 ~~~~a~~l~lp~~~~l~ 621 (867)
T 2gtq_A 605 NAFKALLLGVPSEAELW 621 (867)
T ss_dssp HHHHHHHTCCCCHHHHT
T ss_pred HHHHHHHhcCCCHHHHH
Confidence 888888876 344443
No 8
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=100.00 E-value=8e-75 Score=671.92 Aligned_cols=451 Identities=17% Similarity=0.247 Sum_probs=350.8
Q ss_pred CeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CC-cceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhccccCC
Q 004221 18 GAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PD-IGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVS 95 (767)
Q Consensus 18 ~~~~~hy~l~L~id~~~~~~~G~v~i~i~~-~~-~~~I~L~~~~l~I~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (767)
-+++.||+|+|++|+++++|+|+|+|++.+ .+ ++.|.||+++|+|++|+|||++++|........
T Consensus 13 ~~rv~Hy~L~l~vD~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~~~------------- 79 (608)
T 3u9w_A 13 VCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQSY------------- 79 (608)
T ss_dssp TEEEEEEEEEEEEETTTTEEEEEEEEEEEECSTTEEEEEEEESSCEEEEEEETTEECCEEECCCCGG-------------
T ss_pred CCCceEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEECCEEcceeccccccc-------------
Confidence 468999999999999999999999999986 33 589999999999999999999988876532100
Q ss_pred CCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcCceEEEEEEEEecCCcceEEEcc
Q 004221 96 SPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGN 175 (767)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~~~~y~~~~~~~G~~f~~~ 175 (767)
....|.|.++. .++.|. .+.+.+.|+|.+... |+....+. ...|. ..+
T Consensus 80 --------------------~~~~l~I~l~~---~l~~g~---~~~l~I~y~~~~~~~-~~~~~~~~---~~~g~--~~~ 127 (608)
T 3u9w_A 80 --------------------KGSPMEISLPI---ALSKNQ---EIVIEISFETSPKSS-ALQWLTPE---QTSGK--EHP 127 (608)
T ss_dssp --------------------GCEEEEEEEEE---EECTTC---EEEEEEEEECCTTCT-TEEEECGG---GSSSS--SSC
T ss_pred --------------------cCceEEEEcCC---CCCCCC---EEEEEEEEEEEcCCC-ceeeeccc---ccCCC--cce
Confidence 01136676543 222221 223346777776543 22222111 11221 256
Q ss_pred eEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEecCCCccceeeEEEEeec
Q 004221 176 ALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPF 255 (767)
Q Consensus 176 ~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliafavg~f 255 (767)
+++|||||.+||+||||+|+|+.||+|+++|++|++++|+|||++.++...+.++++++++|..++|||+|++||+||+|
T Consensus 128 ~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p~~~~alsng~~~~~~~~~~~~~~~~~~f~~t~pmstYL~a~~vg~f 207 (608)
T 3u9w_A 128 YLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGAL 207 (608)
T ss_dssp EEEECCTTTTGGGTSCBCCSTTCCEEEEEEEEEETTSEEEESSEEEEEEECTTCTTEEEEEEEEEEEECGGGCCEEEESC
T ss_pred EEEEcccCCCCCEEEEecCccceeEEEEEEeeCCcceeeeeeccccceeeccCCCCeEEEEEEecCCcccEEEEEEEeee
Confidence 89999999999999999999999999999999999999999999987776656778999999999999999999999999
Q ss_pred eEeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEE-CCCCcccccccccchhhhcccccc
Q 004221 256 EVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFL-APEMAVSSSTFGAAMGIFSSQILY 334 (767)
Q Consensus 256 ~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~v-p~~~~~~~~~~gagl~~~~~~lL~ 334 (767)
+..+. +..+++|+.|+..+.+.++++.+.++|++||+++| ||||+++++|++ |++..++|||+ ||+++++.+|.
T Consensus 208 ~~~~~--~~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~~g-~Yp~~~~~~vv~~p~f~~GgMEn~--gl~~~~~~~l~ 282 (608)
T 3u9w_A 208 ESRQI--GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--CLTFVTPTLLA 282 (608)
T ss_dssp EEEEE--ETTEEEEECHHHHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--TEEEECGGGCC
T ss_pred eeEec--CCceEEEeChhhHHHHHHHHHHHHHHHHhHHhcCC-CCCchhhceeeecccccchhhhcC--cceeeeeeeec
Confidence 88764 56789999999999999999999999999999998 999999999988 55667899998 68888776665
Q ss_pred CccccchhhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHHHhccccee--cccCC
Q 004221 335 DEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCK--ADDSG 412 (767)
Q Consensus 335 ~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~~ 412 (767)
.+... ..+||||||||||||+||++||+|+|||||||+|++++++++++|.+.........+..... .....
T Consensus 283 ~~~~~------~~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (608)
T 3u9w_A 283 GDKSL------SNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGE 356 (608)
T ss_dssp SSSTT------THHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccchh------HHHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhhhc
Confidence 54322 34799999999999999999999999999999999999999999987653322111111100 00011
Q ss_pred CcccCCCCccccCCCCcccccccceeeehHHHHHHHHHHhhC-HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhc
Q 004221 413 ATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVG 491 (767)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG-~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~~~~ 491 (767)
..++... ..+....+....|+.++|.||++|||||++.|| ++.|+++|+.|++++++++ ++++||++.+++++
T Consensus 357 ~~p~~~~--~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~~~F~~~lr~Yl~~~~~~~----~tt~Df~~~l~~~~ 430 (608)
T 3u9w_A 357 THPFTKL--VVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDFLYSYF 430 (608)
T ss_dssp TCGGGSS--SCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHHT
T ss_pred cCCcccc--ccccccCChhhcccHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHh
Confidence 1111110 011112223457999999999999999999998 6889999999999999996 79999999999887
Q ss_pred CCCcccHHhH----HHhhccCCCceEEEEEEEEecCCcEEEEEEEe
Q 004221 492 NLERPFLKEF----FPRWVGTCGCPVLRMGFSYNKRKNIVELAVLR 533 (767)
Q Consensus 492 ~~~~~dl~~f----~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q 533 (767)
+ .+++.+ |++|++++|+|+++|+++++..+..++++|++
T Consensus 431 ~---~~~~~~~~~~~~~W~~~~G~P~v~v~~d~~~~~~~~~l~q~~ 473 (608)
T 3u9w_A 431 K---DKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRW 473 (608)
T ss_dssp G---GGHHHHHTSCHHHHHHCCSSCSSCCCCCCTTTHHHHHHHHHH
T ss_pred c---cccchhhHHHHHHHhcCCCCCceeeeeccccccceeeHHhHH
Confidence 4 467776 99999999999999988776555666666554
No 9
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=100.00 E-value=1.8e-67 Score=610.11 Aligned_cols=426 Identities=18% Similarity=0.270 Sum_probs=329.2
Q ss_pred CCCeEEEEEEEEEEEeccCcEEEEEEEEEEEcC-C-cceEEEeccCceeeEEEE-c--C--eeeeeeeCCCCcccchhhh
Q 004221 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-D-IGIVGLHAENLGIESVLV-D--G--EPTEFEYYPHNHQNVENEK 88 (767)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~~-~-~~~I~L~~~~l~I~~v~v-~--g--~~~~~~~~~~~~~~~~~~~ 88 (767)
...+.|.||+|+|++|+++.+|+|+|+|++.+. + ++.|.||+++|+|.+|+| + | +++.|.+.+....
T Consensus 23 p~~~~~~hy~l~l~~d~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~l~I~~v~v~~~~g~~~~~~~~~~~~~~~------ 96 (605)
T 3cia_A 23 YDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHRVMAKNSQGQWVKVNYDLAKRDDV------ 96 (605)
T ss_dssp TTTEEEEEEEEEEEEETTTTEEEEEEEEEEEECCSSCCCEEEBCSSEEEEEEEEECTTCCEEEECEEEEEECSS------
T ss_pred CCCceEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEEEcCCCCccceeEEecCcccc------
Confidence 368999999999999999999999999999863 3 789999999999999999 8 8 7777765421000
Q ss_pred hccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcCceEEEEEEEEec-CC
Q 004221 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-VE 167 (767)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~~~~y~~~~-~~ 167 (767)
....|.|.++ . +.+++ .+.|+|.+.. .|+ +|... ..
T Consensus 97 ---------------------------~~~~l~i~l~-------~--~~~~l--~i~y~~~~~~-~gl----~~~~~~~~ 133 (605)
T 3cia_A 97 ---------------------------LGSKLTINTP-------L--NAKKV--RVYYNSTEKA-TGL----QWLSAEQT 133 (605)
T ss_dssp ---------------------------SCEEEEECCC-------T--TCSEE--EEEEEECTTC-TTE----EEECGGGS
T ss_pred ---------------------------CCCeEEEEeC-------C--ceEEE--EEEEEEecCC-Cce----EEeccccc
Confidence 0113666442 0 12333 3677777653 232 22221 11
Q ss_pred cceEEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEecCCCcccee
Q 004221 168 VGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKW 247 (767)
Q Consensus 168 ~G~~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~yl 247 (767)
+|. .+++++|||||.+||+||||+|+|+.||+|+++|++|++|+|+|||....+. ..++ +++|..++|||+|+
T Consensus 134 ~g~--~~~~~~Tq~ep~~AR~~fPc~D~P~~katf~i~i~~p~~~~alsng~~~~~~---~~~~--~~~f~~t~pmstYl 206 (605)
T 3cia_A 134 AGK--EKPFLFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGT---ERDG--DYFFSMPQAIPPYL 206 (605)
T ss_dssp SSS--SSCEEEECCTTTTGGGTSCBCCCTTCCEEEEEEEECCTTCEEEESSEEC-------CCS--EEEEEEEEEECGGG
T ss_pred CCC--cccEEEecCcccChhhceecCCCcCceeEEEEEEEEcCCcEEEecCCcccee---cCCC--eEEEeeCCCcccee
Confidence 221 2578899999999999999999999999999999999999999998644321 1222 78999999999999
Q ss_pred eEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEEC-CCCcccccccccchh
Q 004221 248 ITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMG 326 (767)
Q Consensus 248 iafavg~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp-~~~~~~~~~~gagl~ 326 (767)
+||+||+|+.++. +..+++|++|+..+.++++++.+.+++++|+++|| +|||++|++|++| ++..++|||+ |++
T Consensus 207 ~a~~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~fG-~YP~~k~d~v~~p~~f~~GgMEn~--glt 281 (605)
T 3cia_A 207 IAIGVGDLEFKAM--SHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYRWGRYDLLMLPPSFPFGGMENP--RLS 281 (605)
T ss_dssp CCEEEESCEEEES--SSSEEEEECSTTHHHHHHHSTTHHHHHHHHHHHHC-CCTTSCEEEEECCTTCSSSEECCT--TEE
T ss_pred EEEEEeeeeEecC--CCeEEEEeccChHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccEEEECCccCCCcccCC--cEE
Confidence 9999999999875 45799999999999999999999999999999999 9999999999996 6667889999 464
Q ss_pred hhccccccCccccchhhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHH---Hhcc
Q 004221 327 IFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY---KANC 403 (767)
Q Consensus 327 ~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~---~~~~ 403 (767)
..++.+|.++.. ...+||||+|||||||+|||+||+|+|||||||+|++++++++.+|....++... ....
T Consensus 282 f~~~~ll~~~~~------~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~l~ 355 (605)
T 3cia_A 282 FITPTVVAGDKS------LVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLN 355 (605)
T ss_dssp EECGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EecchhccCcHH------HHHHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 446667765432 2358999999999999999999999999999999999999999999875443321 1111
Q ss_pred cceeccc-CCCcccCCCCccccCCCCcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCCCCHHH
Q 004221 404 AVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKE 482 (767)
Q Consensus 404 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~ 482 (767)
..+ ... ....++. .++.+.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++|
T Consensus 356 ~~l-~~~~~~~~pl~-----~~~~~~~~~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~~lr~yl~~~~~~~----~t~~d 425 (605)
T 3cia_A 356 AEI-LELDASDTQLY-----IDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQS----LGTDN 425 (605)
T ss_dssp HHH-HHSCTTTTSSS-----CCCTTCCTTTSCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTTEE----ECHHH
T ss_pred HHH-HhhccCCCCcc-----cCCCCCChhHhhCccchhHHHHHHHHHHHHhChHHHHHHHHHHHHHhCcCC----CCHHH
Confidence 110 000 1111111 122223455689999999999999999999999999999999999999985 79999
Q ss_pred HHHHHHHhcCCC-cccHHh-HHHhhccCCCceEEEEEE
Q 004221 483 FRHFANKVGNLE-RPFLKE-FFPRWVGTCGCPVLRMGF 518 (767)
Q Consensus 483 f~~~~~~~~~~~-~~dl~~-f~~~W~~~~G~P~l~v~~ 518 (767)
|++.++++++.. ..+++. +|++|++++|+|++++.+
T Consensus 426 f~~~l~~~~~~~~~~~l~~~~~~~W~~~~G~P~~~~~~ 463 (605)
T 3cia_A 426 FVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQP 463 (605)
T ss_dssp HHHHHHHTTTTTSTTSSCHHHHHHHHHSSSCCSSSCCC
T ss_pred HHHHHHHHhccccccccchhhHHHHhcCCCCCceeccC
Confidence 999999987521 124555 799999999999998754
No 10
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=100.00 E-value=1.8e-67 Score=611.69 Aligned_cols=427 Identities=19% Similarity=0.263 Sum_probs=329.6
Q ss_pred CCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CC----cceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhcc
Q 004221 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PD----IGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWR 91 (767)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~-~~----~~~I~L~~~~l~I~~v~v~g~~~~~~~~~~~~~~~~~~~~~~ 91 (767)
..+.|.||+|+|++|+++.+|+|+|+|++.+ .+ ++.|.||+++|+|++|+|+|+++.|...+....
T Consensus 26 ~~~~~~hY~L~l~~d~~~~~~~G~v~I~~~~~~~~~~~~~~i~Ld~~~l~I~~v~v~g~~~~~~~~~~~~~--------- 96 (632)
T 2xq0_A 26 KDFAVLHTDLNLSVSFEKSAISGSVTFQLKKLHEGKNKSDELHLDTSYLDVQEVHIDGSKADFQIEQRKEP--------- 96 (632)
T ss_dssp GGEEEEEEEEEEEEETTTTEEEEEEEEEEEECC---CCCCEEEEBCSSEEEEEEEETTEECCEEECCCBTT---------
T ss_pred CceeEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCcCcEEEEEccCCEEEEEEECCeecceEEcccccc---------
Confidence 5799999999999999999999999999986 34 789999999999999999999888876532100
Q ss_pred ccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcCceEEEEEEEEec-CCcce
Q 004221 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-VEVGI 170 (767)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~~~~~~~~y~~~~-~~~G~ 170 (767)
....|.|.++.+ + +.+++ .+.|+|.+... |+ +|... ..+|-
T Consensus 97 ------------------------~~~~l~I~l~~~------g-~~~~l--~I~Y~g~~~~~-gl----~~~~~~~~~g~ 138 (632)
T 2xq0_A 97 ------------------------LGSRLVINNASC------N-DNFTL--NIQFRTTDKCT-AL----QWLNSKQTKGG 138 (632)
T ss_dssp ------------------------TBCCEEEECCCS------S-SEEEE--EEEEEECTTCS-SE----EEECTTTSTTS
T ss_pred ------------------------cCcEEEEEecCC------C-CEEEE--EEEEeeecCcC-cc----eeecccccCCC
Confidence 012477766532 1 12333 46777776542 32 22221 11231
Q ss_pred EEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEecCCCccceeeEE
Q 004221 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (767)
Q Consensus 171 ~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliaf 250 (767)
.++++|||||.+||+||||+|+|+.||+|+|+|++| ++|++||.++.+... +..+++|+.++|||+|++||
T Consensus 139 ---~~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p--~~vv~sg~~~~~~~~----~~~~~~F~~t~pmstYLva~ 209 (632)
T 2xq0_A 139 ---KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESP--LPVVFSGIRIEDTSK----DTNIYRFEQKVPIPAYLIGI 209 (632)
T ss_dssp ---SCEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEECS--SCEEESSEECCCC--------CEEEEEEEEEECGGGCCE
T ss_pred ---ceEEEeccccCCcceeeeecCCcccceEEEEEEEEc--hHHhccCccccceec----CCCeEEEEeCCccchhheee
Confidence 467899999999999999999999999999999999 999988866544321 22379999999999999999
Q ss_pred EEeeceEeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHHcCCCCCCCCccEEEEC-CCCcccccccccchhhh
Q 004221 251 AVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGIF 328 (767)
Q Consensus 251 avg~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~v~vp-~~~~~~~~~~gagl~~~ 328 (767)
+||+|+.++. +..+++|++|+..+.+++++. .+.+++++||++|| ||||++|++|++| ++..++|||+ ||++.
T Consensus 210 ~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~fG-pYP~~k~d~v~~pp~f~~GgMEn~--glt~~ 284 (632)
T 2xq0_A 210 ASGDLSSAPI--GPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIF-EYEWGTYDILVNVDSYPYGGMESP--NMTFA 284 (632)
T ss_dssp EESSCEEEEE--ETTEEEEECHHHHHHHHHHHTTTHHHHHHHHHHHSC-CCCSSCCCEEECCTTCCSSEECCT--TCEEE
T ss_pred eEecceeecc--CCeeEEEEccchHHHHHHHHHHHHHHHHHHHHHhcc-cCCcccccEEEECCCCCCCccccc--eEEEe
Confidence 9999999875 457999999999899999998 99999999999999 9999999999995 6667899999 46555
Q ss_pred ccccccCccccchhhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHH---Hhcccc
Q 004221 329 SSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY---KANCAV 405 (767)
Q Consensus 329 ~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~---~~~~~~ 405 (767)
++.+|.++.. ...+||||+|||||||+||++||+|+|||||||+|++++++++.+|++..++... ......
T Consensus 285 ~~~ll~~~~~------~~~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~l~~~ 358 (632)
T 2xq0_A 285 TPTLLAHDRS------NIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNS 358 (632)
T ss_dssp CGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred eceeccCchh------HHHHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 7777765432 2358999999999999999999999999999999999999999999876543321 111110
Q ss_pred eecccCCCcccCCCCccccCC-CCcccccccceeeehHHHHHHHHHHhhCH-HHHHHHHHHHHHHhcCCCCCCCCCHHHH
Q 004221 406 CKADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQGASPVRTLSTKEF 483 (767)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~-e~F~~~L~~yl~~~~~~~~~~~~st~~f 483 (767)
+ .......++.. ...++. +.++...|+.++|.||++|||||+..||+ +.|+++|+.|++++++++ ++++||
T Consensus 359 l-~~~~~~~pl~~--l~~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~e~F~~~Lr~Yl~~~~~~~----~tt~Df 431 (632)
T 2xq0_A 359 I-DSMKDPERFST--LVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKS----LDTFQF 431 (632)
T ss_dssp H-HTCSSHHHHTS--SSCCCCSSSCGGGGCSSHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTEE----ECHHHH
T ss_pred H-HhcccCCCCcc--cccCCCCCCChHHhccchhhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhCcCC----CCHHHH
Confidence 0 00000111110 001121 23455689999999999999999999999 999999999999999985 799999
Q ss_pred HHHHHHhcCCCcccHHh-HHHhhccCCCceEEEEEE
Q 004221 484 RHFANKVGNLERPFLKE-FFPRWVGTCGCPVLRMGF 518 (767)
Q Consensus 484 ~~~~~~~~~~~~~dl~~-f~~~W~~~~G~P~l~v~~ 518 (767)
++.++++++..+.+++. +|++|++++|+|+ .+.+
T Consensus 432 ~~~l~~~~~~~~~~l~~~~~~~W~~~~G~P~-~~~~ 466 (632)
T 2xq0_A 432 LDTLYEFYPEKKEILDSVDWETWLYKPGMPP-RPHF 466 (632)
T ss_dssp HHHHHHHCGGGHHHHHTSCHHHHHHCCSCCC-CCCC
T ss_pred HHHHHHHhhhccccccHHHHHHHhcCCCCCC-CcCC
Confidence 99999886421246777 7999999999999 6543
No 11
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.92 E-value=4.8e-24 Score=243.84 Aligned_cols=313 Identities=8% Similarity=0.034 Sum_probs=192.8
Q ss_pred cceEEeeCCCCCCeeEEEEEEEEeCC---eEEEEeCcccceeeccCCCCceEEEEecCC---CccceeeEEEEeeceEee
Q 004221 186 ARCWFPCIDDTTQRCCYDLEFTVSQN---LIAVSAGSLLYQVLSKDDPPRKTYVYRLDV---PVSAKWITLAVAPFEVLP 259 (767)
Q Consensus 186 Ar~~FPC~D~p~~katf~l~i~~p~~---~~aisng~l~~~~~~~~~~~~~~~~f~~t~---p~s~yliafavg~f~~~~ 259 (767)
..+.|.+++.- ...+++++|..|++ |.+.+..+.... ...+..+ |.... -+- --+.+|+|+..+
T Consensus 108 ~~~~fly~~g~-~~~p~~~~i~~P~~~~~W~vaT~L~~~~~----~~~~~~~--f~a~~yd~LvD---sPv~~G~~~~~~ 177 (597)
T 4fgm_A 108 NTSLCLAVEGQ-TDLPCELHLHAPPEAPLWKVATGMPRKSG----QPHSWGC--FRADNYDALID---YPFLIGDLTIEE 177 (597)
T ss_dssp HHHHCCEETTC-TTSCEEEEECCCTTCTTCEEEESSCBCSS----CTTSSEE--EEESSHHHHTT---CCEEEESCEEEE
T ss_pred hhhhheeccCc-cCCcEEEEEECCCCCCcceEEecCCccCC----CCCcceE--EEcCCHHHHhc---chhcccCcEEEE
Confidence 33555566543 56788999999999 998877764321 1113333 43221 010 113678888766
Q ss_pred cCC-CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEEC-CCCcccccccccchhhhcccccc-Cc
Q 004221 260 DHH-QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGIFSSQILY-DE 336 (767)
Q Consensus 260 ~~~-~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp-~~~~~~~~~~gagl~~~~~~lL~-~~ 336 (767)
... +.++++..........+..+..+++++++++++|| +|||++|++++.+ ++..++||+.++.+++++...+. ..
T Consensus 178 ~~~~g~p~~l~v~~~~~~d~~~~~~~~~~~~~~~~~~fG-~yP~~~Y~fl~~~~~~~~GgmEh~~st~l~~~~~~l~~~~ 256 (597)
T 4fgm_A 178 FIAHGIKHSLVLSGRHYADTSRITADLAKICETQISLFE-EAPFQSYTFLTMVVGNGFGGLEHRNSTALLCSRKDLISAH 256 (597)
T ss_dssp EEETTEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHT-SCSCSEEEEEEEEESSCCEEEECSSEEEEEEEGGGSCCTT
T ss_pred eccCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC-CCCCCceEEEEEccCCCCcccccCCceEEEeCchhccccc
Confidence 543 44565544333333457888899999999999999 9999999987642 33456788765444445433221 11
Q ss_pred c-ccchhh-hHHHHHHHHHHHHhhccccCC-----------CCCCchHHHHHHHHHHHHHHHHHhhCc--hHHHHHHHHh
Q 004221 337 K-VIDQAI-DTSIKLSFALARQWFGVYITP-----------ELPNDEWLLDGLAGFLTDSFIKKFLGN--NEARYRRYKA 401 (767)
Q Consensus 337 ~-~~~~~~-~~~~~iaHElAHQWfG~lVt~-----------~~w~d~WL~EGfA~y~~~~~~~~~~G~--~~~~~~~~~~ 401 (767)
. .....+ ....+++||++|||||+.|+| ++|+++||+||||+|++.+++.+.-.. +++.......
T Consensus 257 ~~~~~~~~~~~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r~G~~~~~~~~~~l~~~ 336 (597)
T 4fgm_A 257 QYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTSGIIDEKRYLKLLGDT 336 (597)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred cccchhhhhchhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 1 011122 234589999999999988765 556899999999999999998764322 2221111111
Q ss_pred cccceecccCCCcccC-CCC-ccccCC-CCcccccccceeeehHHHHHHHHHHhhCH-----HHHHHHHHHHHHHhcCCC
Q 004221 402 NCAVCKADDSGATALS-SSA-SCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGS-----NFFRKILQNIISRAQGAS 473 (767)
Q Consensus 402 ~~~~~~~~~~~~~~l~-~~~-~~~~~~-~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~-----e~F~~~L~~yl~~~~~~~ 473 (767)
...+.........++. ++. .....+ +.+-........|.||++|++||+..|++ +.|+++||.|++++....
T Consensus 337 i~~~~~~~gr~~~sl~~ss~~aw~~~yr~~~n~~n~~~s~Y~KGalv~~~LD~~lR~~s~g~~sldd~mr~l~~~~~~~~ 416 (597)
T 4fgm_A 337 LSRVERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVSYYAKGALIALSLDLMLRLQSDHKLTLARVMKELWHEFGKTS 416 (597)
T ss_dssp HHHHHHSGGGGTCCHHHHHHTCCCCCTTCCTTHHHHCCCTTHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHTTTT
T ss_pred HHHhhcCCCccccChHHcCchhhhccccCCcccCCcccccchHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhCcCC
Confidence 1111100000001110 000 000001 01000011123589999999999888855 589999999999986421
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcccHHhHHHhhccCCCceEE
Q 004221 474 PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVL 514 (767)
Q Consensus 474 ~~~~~st~~f~~~~~~~~~~~~~dl~~f~~~W~~~~G~P~l 514 (767)
..+++++|.+++++++| .||.+||++|+++++.|.+
T Consensus 417 --~~~t~~d~~~~~e~~sG---~dl~~ff~~~l~~t~~~p~ 452 (597)
T 4fgm_A 417 --IGTADDTVINWLNQYPG---IDISDFLKDALYNKESLSL 452 (597)
T ss_dssp --CCBCTTHHHHHHHTSTT---CCCHHHHHHHHHSCSCCCC
T ss_pred --CCCCHHHHHHHHHHhcC---cCHHHHHHHHHhCCCCcch
Confidence 14789999999999875 5899999999999998643
No 12
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=98.78 E-value=2.7e-08 Score=109.82 Aligned_cols=147 Identities=13% Similarity=0.135 Sum_probs=98.1
Q ss_pred CceEEEEEEEEecCCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCCcceeeEEEEeccCCcccccccccCCCcce
Q 004221 510 GCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQ 589 (767)
Q Consensus 510 G~P~l~v~~~~~~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plti~~~e~dg~~~~~~~~~~~~~~~ 589 (767)
|||+|+|+.+ ++.+.|+|+||..... .. .+.+..|++|+++..... ++....++ .+..
T Consensus 1 GyPvvtV~~~----~~~~~l~Q~RFl~~~~--------~~-----~~~~~~W~IPl~~~~~~~-~~~~~~~l--~~~~-- 58 (419)
T 3rjo_A 1 GFPLITITVR----GRNVHMKQEHYMKGSD--------GA-----PDTGYLWHVPLTFITSKS-DMVHRFLL--KTKT-- 58 (419)
T ss_dssp CEEEEEEEEE----TTEEEEEEEEEC-----------------------CCCCEEEEEEESSC-SSCEEEEE--CSSE--
T ss_pred CCCEEEEEEC----CCEEEEEEeeccCCCC--------CC-----CCCCeEEEEEEEEEeCCC-CccceEEE--ecCc--
Confidence 9999999862 4688999999864211 00 012458999999976432 21111110 0000
Q ss_pred eEeeeecccchhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCeeEEEecCCCceeEEEeecCchHHH---HHHHcc
Q 004221 590 LLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMW---INQLEK 666 (767)
Q Consensus 590 ~~~i~~~~k~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir~d~~~~~~~~v~~~~~~~~~---~~qL~~ 666 (767)
.. + ..+++.+||++|+++.|+||| +|++.+| +.||+.
T Consensus 59 -~~------------------------------i-------~l~~~~~wi~~N~~~~GyYRV--nYd~~~w~~L~~~L~~ 98 (419)
T 3rjo_A 59 -DV------------------------------L-------ILPEEVEWIKFNVGMNGYYIV--HYEDDGWDSLTGLLKG 98 (419)
T ss_dssp -EE------------------------------E-------ECSSCCSCEEEEESSSSCCEE--ECHHHHHHHHHHHHHH
T ss_pred -eE------------------------------E-------EcCCCCceEEEeCCccceEEE--EeCHHHHHHHHHHHhh
Confidence 00 0 011335799999999999999 7777777 566654
Q ss_pred c------CChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 004221 667 D------GDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (767)
Q Consensus 667 d------~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~ 719 (767)
+ .|..+-++++.+|++.+..+...+..|.+.|.+| .-|-|+.+|...|..+.
T Consensus 99 ~~~~i~~~dRa~LidD~~~La~ag~~~~~~~l~l~~yL~~E-~~y~~w~~~~~~l~~l~ 156 (419)
T 3rjo_A 99 THTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHE-TEIMPVFQGLNELIPMY 156 (419)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGGGC-CSHHHHHHHHHHHHHHH
T ss_pred CCccCCHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccc-chHHHHHHHHHHHHHHH
Confidence 4 3445566889999999888888888899999998 46789999999988654
No 13
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=83.35 E-value=1.6 Score=38.49 Aligned_cols=68 Identities=21% Similarity=0.134 Sum_probs=52.0
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 004221 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (767)
Q Consensus 659 ~~~~qL~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f 735 (767)
.++..| .|+|..-|..|+.+|...+ ...++..|.+.|.|+ .+.||.+|+.+|+++..+ ..+..|++..
T Consensus 46 ~L~~~L-~d~~~~vR~~A~~aL~~~~--~~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~----~a~~~L~~~l 113 (131)
T 1te4_A 46 PLLESL-SNEDWRIRGAAAWIIGNFQ--DERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGE----RVRAAMEKLA 113 (131)
T ss_dssp HHHHGG-GCSCHHHHHHHHHHHGGGC--SHHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSH----HHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcH----HHHHHHHHHH
Confidence 345555 6899999999999999875 345678899999874 689999999999998743 2455565554
No 14
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=72.77 E-value=6.3 Score=37.14 Aligned_cols=50 Identities=32% Similarity=0.238 Sum_probs=23.2
Q ss_pred ccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 004221 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (767)
Q Consensus 666 ~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~ 719 (767)
.|.|..-+..|+.+|...+. ..++..|.+.|.|+ ...||..|+.+|+++.
T Consensus 55 ~~~~~~vr~~a~~~L~~~~~--~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 55 KDEDAWVRRAAADALGQIGD--ERAVEPLIKALKDE--DGWVRQSAAVALGQIG 104 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Confidence 34444445555555554321 22334445545442 3445555555555544
No 15
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=70.59 E-value=24 Score=35.88 Aligned_cols=100 Identities=7% Similarity=0.076 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccEE-EECC--CCcccccccccchhhhcc--ccccCccccchhhhHHHHHHH
Q 004221 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV-FLAP--EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKLSF 351 (767)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v-~vp~--~~~~~~~~~gagl~~~~~--~lL~~~~~~~~~~~~~~~iaH 351 (767)
.+..+.-.+.++.+||.++|| .=++.. .++ .|-. ...++ .|-+.-++|.+ ...++ .....+++|
T Consensus 72 ~~~DAhy~a~~~~d~y~~~~g-r~~id~-~l~~~Vhyg~~y~NA--fWdG~~M~fGDG~~~~~p-------~~~lDVv~H 140 (301)
T 1u4g_A 72 PLNDAHFFGGVVFKLYRDWFG-TSPLTH-KLYMKVHYGRSVENA--YWDGTAMLFGDGATMFYP-------LVSLDVAAH 140 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCSSSS-CEEEEESCTTTCCCE--EECSSCEEECCCCSSBSC-------SCCHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHcC-CCCCCC-ceEEEEecCCCccCc--EecCcEEEeeCCCccccc-------ccccceeee
Confidence 355667778899999999998 446652 333 2321 11222 22212223322 11111 112458999
Q ss_pred HHHHHhhccccCCCCCCchH-HHHHHHHHHHHHHHHH
Q 004221 352 ALARQWFGVYITPELPNDEW-LLDGLAGFLTDSFIKK 387 (767)
Q Consensus 352 ElAHQWfG~lVt~~~w~d~W-L~EGfA~y~~~~~~~~ 387 (767)
|++|--.-....+....+.. |||||+..+...+-..
T Consensus 141 E~tHGVt~~~agL~y~~eSGaLnEs~SDifG~~ve~~ 177 (301)
T 1u4g_A 141 EVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFY 177 (301)
T ss_dssp HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeccccCccccCCccchhHHHHHHHHHHHHHH
Confidence 99999877765555444443 9999999998765433
No 16
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A*
Probab=68.47 E-value=2.7 Score=48.73 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhccccCCCCCC---------chHHHHHHHHHHHH
Q 004221 347 IKLSFALARQWFGVYITPELPN---------DEWLLDGLAGFLTD 382 (767)
Q Consensus 347 ~~iaHElAHQWfG~lVt~~~w~---------d~WL~EGfA~y~~~ 382 (767)
.++.||++|.-=|-+..+..|. -.|+.||||.||+.
T Consensus 424 e~f~HEytHyLdgRy~~~G~f~~~~~y~~~~~vW~~EG~AEY~s~ 468 (785)
T 2y3u_A 424 ELFRHEYTHYLQARYLVDGLWGQGPFYEKNRLTWFDEGTAEFFAG 468 (785)
T ss_dssp HHHHHHHHHHHHHHHTSCSSTTSSGGGTTTCSHHHHHHHHHHHTT
T ss_pred ccccchhhhccccccccccccccCcccccCCCceehhhHHHHHhc
Confidence 3568999999866555555554 57999999999964
No 17
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=67.39 E-value=8.6 Score=36.48 Aligned_cols=51 Identities=31% Similarity=0.237 Sum_probs=23.8
Q ss_pred ccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhcc
Q 004221 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (767)
Q Consensus 666 ~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~ 720 (767)
.|.|..-+..|+.+|...+. ...+..|.+.|.|+ -..||..|+.+|+++..
T Consensus 60 ~~~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 60 KDEDAWVRRAAADALGQIGD--ERAVEPLIKALKDE--DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp TCSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 34454455555555554332 22334455555443 34455555555555443
No 18
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=65.29 E-value=6.3 Score=34.46 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=43.3
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhh
Q 004221 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (767)
Q Consensus 660 ~~~qL~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~ 718 (767)
++..| .|.|..-+..|+.+|.+.+ ...++..|...|.|+ -..||..|+.+|+++
T Consensus 78 L~~~L-~d~~~~VR~~A~~aL~~~~--~~~a~~~L~~~l~d~--~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 78 LIKLL-EDDSGFVRSGAARSLEQIG--GERVRAAMEKLAETG--TGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHH-HHCCTHHHHHHHHHHHHHC--SHHHHHHHHHHTTSC--CTHHHHHHHHHGGGC
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHhCC--CHHHHHHHHHHHHhC
Confidence 44555 6889999999999999875 345678899999775 568999999999864
No 19
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.55 E-value=10 Score=35.54 Aligned_cols=50 Identities=36% Similarity=0.414 Sum_probs=26.8
Q ss_pred ccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 004221 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (767)
Q Consensus 666 ~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~ 719 (767)
.|.|..-|..|+.+|.+.+. ..++..|.+.|.|+ .+.||..|+.+|+++.
T Consensus 86 ~d~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQIGD--ERAVEPLIKALKDE--DWFVRIAAAFALGEIG 135 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhCc--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Confidence 45555556666666665432 22445555555443 4556666666666554
No 20
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=64.11 E-value=14 Score=36.78 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=34.6
Q ss_pred ccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 004221 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (767)
Q Consensus 666 ~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f~ 736 (767)
.|.|..-+..|+.+|...+ ...++..|.+.|.|.. ||..|+.+|+++..+ ..++.|.++.+
T Consensus 202 ~d~~~~vR~~A~~aL~~~~--~~~~~~~L~~~l~d~~----vr~~a~~aL~~i~~~----~~~~~L~~~l~ 262 (280)
T 1oyz_A 202 QDKNEEVRIEAIIGLSYRK--DKRVLSVLCDELKKNT----VYDDIIEAAGELGDK----TLLPVLDTMLY 262 (280)
T ss_dssp TCSCHHHHHHHHHHHHHTT--CGGGHHHHHHHHTSSS----CCHHHHHHHHHHCCG----GGHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhC--CHhhHHHHHHHhcCcc----HHHHHHHHHHhcCch----hhhHHHHHHHh
Confidence 4556666666666666654 3345556666666542 666666666666543 23555555543
No 21
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=61.66 E-value=12 Score=35.32 Aligned_cols=50 Identities=32% Similarity=0.215 Sum_probs=21.7
Q ss_pred ccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 004221 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (767)
Q Consensus 666 ~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~ 719 (767)
.|.|..-+..|+.+|...+. ...+..|.+.+.|+ ...||..|+.+|+++.
T Consensus 122 ~d~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 122 KDEDWFVRIAAAFALGEIGD--ERAVEPLIKALKDE--DGWVRQSAADALGEIG 171 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC
T ss_pred hCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Confidence 44444444444444444321 12334444444332 2345555555555443
No 22
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=61.24 E-value=40 Score=34.29 Aligned_cols=98 Identities=5% Similarity=0.030 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCC--ccEE-EEC-C------CCcccccccccchhhhcc--ccccCccccchhhhH
Q 004221 278 IHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLA-P------EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDT 345 (767)
Q Consensus 278 ~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~v-~vp-~------~~~~~~~~~gagl~~~~~--~lL~~~~~~~~~~~~ 345 (767)
+..+...+..+.+||.+.|| .=++.- ..++ .|- + ...++ .|-+..++|.+ ...+.+- -..
T Consensus 67 avdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~Vhyg~~~~~~~y~NA--fWdg~~m~fGdGdg~~f~~~-----~~~ 138 (301)
T 1bqb_A 67 GVDANYYAKQTYDYYKNTFG-RESYDNHGSPIVSLTHVNHYGGQDNRNNA--AWIGDKMIYGDGDGRTFTNL-----SGA 138 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEECCCEETTEECTTCE--EECSSSEEECCCCSSSBSCG-----GGC
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEEeCCCCCCCCccCc--EEcCCEEEEEcCCCcccCCc-----ccc
Confidence 34667778899999999999 446642 3332 232 1 11122 12222223322 1111111 112
Q ss_pred HHHHHHHHHHHhhccccCCCCCCch-HHHHHHHHHHHHH
Q 004221 346 SIKLSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDS 383 (767)
Q Consensus 346 ~~~iaHElAHQWfG~lVt~~~w~d~-WL~EGfA~y~~~~ 383 (767)
..+++||++|--.-....+..-.+. =|||||+..+...
T Consensus 139 lDVv~HE~tHGVt~~~agl~y~~eSGaLnEs~SDifg~~ 177 (301)
T 1bqb_A 139 NDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYF 177 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cceeeeecccceecccCCCcccCCcCchhHHHHHHHhHh
Confidence 4589999999876655444433333 3999999999864
No 23
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=61.18 E-value=14 Score=36.75 Aligned_cols=71 Identities=25% Similarity=0.176 Sum_probs=52.7
Q ss_pred HHHHHHcccCChHHHHHHHHHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 004221 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (767)
Q Consensus 659 ~~~~qL~~d~dv~aq~~a~~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f~ 736 (767)
.++..| .|.|..-+..|+.+|...+..+..++..|.+.|.|+ ...||.+|+.+|+++..+ ..+..|++..+
T Consensus 163 ~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~~~----~~~~~L~~~l~ 233 (280)
T 1oyz_A 163 LLINLL-KDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRKDK----RVLSVLCDELK 233 (280)
T ss_dssp HHHHHH-TCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTTCG----GGHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCH----hhHHHHHHHhc
Confidence 345555 678888899999999887544666788999999875 578999999999998743 23455555443
No 24
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=57.89 E-value=74 Score=32.90 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCCCC--ccEE-EECC--CCcccccccccchhhhccc--cccCccccchhhhHHHH
Q 004221 276 SKIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLAP--EMAVSSSTFGAAMGIFSSQ--ILYDEKVIDQAIDTSIK 348 (767)
Q Consensus 276 ~~~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~v-~vp~--~~~~~~~~~gagl~~~~~~--lL~~~~~~~~~~~~~~~ 348 (767)
..+..+...+....+||.+.||.. ++.- ..++ .|-. ...++. |-+...+|.+. ..|.+- .....+
T Consensus 88 ~av~~ay~~~~~t~d~y~~~~grn-sid~~G~~l~~~VHyg~~y~NAf--WdG~~M~fGDG~g~~f~~~-----~~~lDV 159 (341)
T 2vqx_A 88 VAVDEAYDYLGVTYDFFWQAFKRN-SLDNQGLPLTGSVHYGKEYQNAF--WNGQQMVFGDGDGEIFNRF-----TIAIDV 159 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC-STTSSCCCEEEEESCSSSCCCEE--ECSSCEEECCCCSSSBCCT-----TSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CCCCCCCeeEEEEecCCCccCce--ecCcEeEeeCCCCcccCCc-----ccchhh
Confidence 345556667788999999999943 5531 3333 2321 112222 22222233211 111111 112358
Q ss_pred HHHHHHHHhhccccCCCCCCch-HHHHHHHHHHHHHHHHHhhC
Q 004221 349 LSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFIKKFLG 390 (767)
Q Consensus 349 iaHElAHQWfG~lVt~~~w~d~-WL~EGfA~y~~~~~~~~~~G 390 (767)
++||++|--.-....+..-.+. =|||||+..+...+-....+
T Consensus 160 v~HEltHGVt~~~agL~Y~~eSGaLNEs~SDifG~~ve~~~~~ 202 (341)
T 2vqx_A 160 VGHALAHGVTESEAGLIYFQQAGALNESLSDVFGSLVKQFHLK 202 (341)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcccceecccCCccccCCCcchhhHHHHHHHHHHHHHhcC
Confidence 9999999876655444433333 39999999998766444333
No 25
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=56.92 E-value=12 Score=31.72 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhcc
Q 004221 345 TSIKLSFALARQWFGV 360 (767)
Q Consensus 345 ~~~~iaHElAHQWfG~ 360 (767)
...+||||++|-=-++
T Consensus 83 l~aVlaHElgH~~~~h 98 (107)
T 3cqb_A 83 AEAVLAHEVSHIANGD 98 (107)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 3558999999975444
No 26
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=54.18 E-value=63 Score=32.80 Aligned_cols=101 Identities=4% Similarity=0.017 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCC--ccEEE-E--CCCCcccccccccchhhhcc--ccccCccccchhhhHHHHH
Q 004221 277 KIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQVF-L--APEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKL 349 (767)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~v~-v--p~~~~~~~~~~gagl~~~~~--~lL~~~~~~~~~~~~~~~i 349 (767)
.+..+...+.+..+||.+.|| .=++.- +.++. | .....++. |-+...+|.+ ...+.+- .....++
T Consensus 62 aavdA~~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NAf--W~g~~m~fGDGdg~~f~~~-----~~slDVv 133 (304)
T 4ger_A 62 AGVDAHTYAAKTYDYYKAKFG-RNSIDGRGLQLRSTVHYGSRYNNAF--WNGSQMTYGDGDGSTFIAF-----SGDPDVV 133 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEEEESSSCCCEE--ECSSCEEEECCCSSSBCCG-----GGSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeEEEEEeCCCCccCce--ecCCEEEEeCCCCcccccc-----ccccchh
Confidence 455677788899999999999 446541 33332 2 22222332 2222334432 1122211 1124589
Q ss_pred HHHHHHHhhccccCCCCCCch-HHHHHHHHHHHHHHH
Q 004221 350 SFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFI 385 (767)
Q Consensus 350 aHElAHQWfG~lVt~~~w~d~-WL~EGfA~y~~~~~~ 385 (767)
+|||.|--.-.......-.+. =|||+|+..+...+-
T Consensus 134 aHEltHGVt~~ta~L~Y~~qsGaLNEs~SDifG~~ve 170 (304)
T 4ger_A 134 GHELTHGVTEYTSNLEYYGESGALNEAFSDVIGNDIQ 170 (304)
T ss_dssp HHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccCCccccCCccchhHHHHHHHHHHhc
Confidence 999999765543222221222 389999999987664
No 27
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=51.97 E-value=76 Score=32.40 Aligned_cols=102 Identities=3% Similarity=0.005 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCCC--CccEE-EEC--CCCcccccccccchhhhcc--ccccCccccchhhhHHHH
Q 004221 276 SKIHNTVEFFHNAFSHYETYLDAKFPFG--SYKQV-FLA--PEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIK 348 (767)
Q Consensus 276 ~~~~~~~~~~~~~l~~~e~~~g~~YP~~--k~~~v-~vp--~~~~~~~~~~gagl~~~~~--~lL~~~~~~~~~~~~~~~ 348 (767)
..+..+...+....+||.+.|| .=++. -+.++ .|. ....++ .|-+..++|.+ ...+.+- .....+
T Consensus 68 ~aavdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~VHyg~~y~NA--fW~g~~m~fGDGdg~~f~~~-----~~slDV 139 (316)
T 3dnz_A 68 APAVDAHYYAGVTYDYYKNVHN-RLSYDGNNAAIRSSVHYSQGYNNA--FWNGSQMVYGDGDGQTFIPL-----SGGIDV 139 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEESCTTTCCCE--EECSSCEEECCCCSSSBSCG-----GGCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCceEEEEEecCCCccCc--eEcCCEEEEeCCCCcccccc-----cccccc
Confidence 3456777888999999999999 44664 23333 232 111223 22222333422 1122221 112458
Q ss_pred HHHHHHHHhhccccCCCCCCch-HHHHHHHHHHHHHHH
Q 004221 349 LSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFI 385 (767)
Q Consensus 349 iaHElAHQWfG~lVt~~~w~d~-WL~EGfA~y~~~~~~ 385 (767)
++||+.|--.-.......-.+. =|||+|+..+...+-
T Consensus 140 v~HE~tHgvt~~~agL~y~~esGaLNEs~SDifG~~ve 177 (316)
T 3dnz_A 140 VAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVE 177 (316)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeccccccccCCCcccCCccchhHHHHHHHHHHHH
Confidence 9999999866554333322222 399999999986654
No 28
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=37.96 E-value=24 Score=34.99 Aligned_cols=54 Identities=7% Similarity=-0.008 Sum_probs=27.9
Q ss_pred CccEEEECCCCcccccccccchhhhccccccCccccchhhhHHHHHHHHHHHHhhccc
Q 004221 304 SYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVY 361 (767)
Q Consensus 304 k~~~v~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~l 361 (767)
.+.+.++++...++.. .++|.+.+.+.||-.- +...+...+||||++|-=-++.
T Consensus 63 ~~~v~v~~~~~~NAfa-~~gg~I~v~~gLl~~l---~~~~ELaaVLaHElgH~~~~H~ 116 (253)
T 3c37_A 63 DYVFKVVKDDSVNAFA-IPGGRVYVHTGLLKAA---DNETELAGVLAHEINHAVARHG 116 (253)
T ss_dssp CCEEEEECCCSCCEEE-ETTTEEEEEHHHHHHC---SSHHHHHHHHHHHHHHHHTTHH
T ss_pred CeEEEEEeCCCCCeeE-cCCCeEEeeHHHHhhC---CCHHHHHHHHHHHHHHHHCcCH
Confidence 4566667654444432 2334444444444211 0112345589999999755443
No 29
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease, alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas SP} PDB: 3nqy_B 3nqz_B
Probab=36.72 E-value=1.6e+02 Score=29.74 Aligned_cols=99 Identities=8% Similarity=0.108 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccEE-EE--CCCCcccccccccchhhhcc--ccccCccccchhhhHHHHHHH
Q 004221 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV-FL--APEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKLSF 351 (767)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v-~v--p~~~~~~~~~~gagl~~~~~--~lL~~~~~~~~~~~~~~~iaH 351 (767)
.+..+.-.+..+.+||.++|| .=|+. ..++ .| .....++ .|-+.-++|.+ ..+++ .....+++|
T Consensus 73 ~~~DAhy~a~~t~d~y~~~~g-r~~id-~~l~~~VHyg~~y~NA--fWdg~~m~fGDG~~~~~~-------~~slDVv~H 141 (306)
T 3nqx_A 73 PLNDAHFFGNVIFNMYNDWLG-TAPLS-FQLQMRVHYSSNYENA--FWDGSAMTFGDGQNTFYP-------LVSLDVSAH 141 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCSSS-SCEEEEEEESSSCCCE--EECSSCEEEECCCSSBSC-------SCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcC-CCCCC-CceEEEEecCCCccCc--cccCCEEEEeCCCccccc-------ccccchhhh
Confidence 355667778899999999999 44664 2332 22 1112233 22222333422 11111 112458999
Q ss_pred HHHHHhhccccCCCCCC-chHHHHHHHHHHHHHHHH
Q 004221 352 ALARQWFGVYITPELPN-DEWLLDGLAGFLTDSFIK 386 (767)
Q Consensus 352 ElAHQWfG~lVt~~~w~-d~WL~EGfA~y~~~~~~~ 386 (767)
|+.|--.-..-.+..-. --=|||||+..+...+-.
T Consensus 142 E~tHGvt~~~a~l~y~~esGaLnEs~SDifg~~ve~ 177 (306)
T 3nqx_A 142 EVSHGFTEQNSGLIYNGKPGGLNEAFSDMAGEAAEF 177 (306)
T ss_dssp HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccCCCCCccCCCCCcccchHHHHHHHHHHH
Confidence 99998765433222211 124999999999876543
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=34.20 E-value=76 Score=29.39 Aligned_cols=79 Identities=22% Similarity=0.154 Sum_probs=54.2
Q ss_pred chHHHHHHHcccCChHHHHHHHHHHHcCCCCch---------hHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccc--
Q 004221 656 PVQMWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD-- 724 (767)
Q Consensus 656 ~~~~~~~qL~~d~dv~aq~~a~~~l~~~~~~s~---------~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~-- 724 (767)
+.+..+..|.++.|..-|.+|+.+|......+. .++..|.+.|.++ .-.||..|+.+|++++.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHHH
Confidence 345556666688898999988888875432221 1456788888775 579999999999998743211
Q ss_pred -----cccHHHHHHHHH
Q 004221 725 -----WAGLLHLVKFYK 736 (767)
Q Consensus 725 -----~~g~~~L~~~f~ 736 (767)
..+++.|+++.+
T Consensus 90 ~~i~~~g~i~~L~~lL~ 106 (210)
T 4db6_A 90 QAVIDAGALPALVQLLS 106 (210)
T ss_dssp HHHHHTTCHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHc
Confidence 236777777764
No 31
>2ejq_A Hypothetical protein TTHA0227; NPPSFA, national project on protein structural and functional analyses; 2.08A {Thermus thermophilus} SCOP: d.92.1.17
Probab=32.39 E-value=20 Score=31.61 Aligned_cols=25 Identities=4% Similarity=-0.063 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHhhccccCCCCCCc
Q 004221 344 DTSIKLSFALARQWFGVYITPELPND 369 (767)
Q Consensus 344 ~~~~~iaHElAHQWfG~lVt~~~w~d 369 (767)
..+.++.||+||. ||.+-..+.|+|
T Consensus 88 ~V~~tvvHEiaHh-fe~lag~~glsd 112 (130)
T 2ejq_A 88 EVWETMLHELRHH-LESLAGRDDLVQ 112 (130)
T ss_dssp HHHHHHHHHHHHH-HHHHHTTC----
T ss_pred HHHHHHHHHhHHH-HHhhcccCCCCH
Confidence 4566899999998 466655555544
No 32
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.30 E-value=62 Score=24.94 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCcccHHhHHHhhccC
Q 004221 460 KILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGT 508 (767)
Q Consensus 460 ~~L~~yl~~~~~~~~~~~~st~~f~~~~~~~~~~~~~dl~~f~~~W~~~ 508 (767)
+.|+.|+.+|+. +..+|+..+|++.. .+...++++|..|...
T Consensus 19 e~L~~Yy~~hk~------L~EeDl~~L~~ksk-ms~qqvkdwFa~k~~E 60 (70)
T 2ys9_A 19 QPLERYWAAHQQ------LRETDIPQLSQASR-LSTQQVLDWFDSRLPQ 60 (70)
T ss_dssp HHHHHHHHHTCC------CCTTHHHHHHHHTT-CCHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHhcc------cchhhHHHHHHHhC-CCHHHHHHHHHhcccc
Confidence 578899999976 57899999999853 3345678777776544
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=24.18 E-value=1e+02 Score=28.53 Aligned_cols=72 Identities=26% Similarity=0.228 Sum_probs=48.3
Q ss_pred HHcccCChHHHHHHHHHHHcCCCCchh---------HhhHHHHhhccCcchhHHHHHHHHHHHhhccccc-------ccc
Q 004221 663 QLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-------DWA 726 (767)
Q Consensus 663 qL~~d~dv~aq~~a~~~l~~~~~~s~~---------~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~-------~~~ 726 (767)
+|..+.+...|..|+.+|......+.. .+..|.+.|.+. -..||..|+.+|+++..... ...
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 138 (210)
T 4db6_A 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAG 138 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 344566777888888888865322221 456778888775 47999999999999874221 123
Q ss_pred cHHHHHHHHH
Q 004221 727 GLLHLVKFYK 736 (767)
Q Consensus 727 g~~~L~~~f~ 736 (767)
++..|++..+
T Consensus 139 ~i~~L~~ll~ 148 (210)
T 4db6_A 139 ALPALVQLLS 148 (210)
T ss_dssp HHHHHHHHTT
T ss_pred cHHHHHHHHc
Confidence 5667776654
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=23.49 E-value=1.1e+02 Score=29.32 Aligned_cols=73 Identities=23% Similarity=0.228 Sum_probs=49.5
Q ss_pred HHHHcccCChHHHHHHHHHHHcCCCCch---------hHhhHHHHhhccCcchhHHHHHHHHHHHhhccccccc------
Q 004221 661 INQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW------ 725 (767)
Q Consensus 661 ~~qL~~d~dv~aq~~a~~~l~~~~~~s~---------~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~------ 725 (767)
+..| ++.+..-|..|+.+|......+. .++..|.+.|.++ ...||..|+.+|+.+.......
T Consensus 60 ~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (252)
T 4db8_A 60 VQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVID 136 (252)
T ss_dssp HHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 3444 56667778888888876543221 2566788888774 5799999999999987543322
Q ss_pred -ccHHHHHHHHH
Q 004221 726 -AGLLHLVKFYK 736 (767)
Q Consensus 726 -~g~~~L~~~f~ 736 (767)
.+++.|+++.+
T Consensus 137 ~~~i~~L~~lL~ 148 (252)
T 4db8_A 137 AGALPALVQLLS 148 (252)
T ss_dssp TTHHHHHHHGGG
T ss_pred CCCHHHHHHHHh
Confidence 35677776664
No 35
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=22.53 E-value=95 Score=29.44 Aligned_cols=74 Identities=30% Similarity=0.270 Sum_probs=49.5
Q ss_pred HHHHHcccCChHHHHHHHHHHHcCCCCch---------hHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccc------
Q 004221 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD------ 724 (767)
Q Consensus 660 ~~~qL~~d~dv~aq~~a~~~l~~~~~~s~---------~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~------ 724 (767)
++..| ++.|..-|.+|+.+|......+. .++..|.+.|.+. .-.||..|+.+|+.+......
T Consensus 7 L~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 7 LVKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34555 45667778888888875432222 2567788888875 389999999999999864211
Q ss_pred -cccHHHHHHHHH
Q 004221 725 -WAGLLHLVKFYK 736 (767)
Q Consensus 725 -~~g~~~L~~~f~ 736 (767)
..+++.|+++.+
T Consensus 84 ~~~~i~~l~~ll~ 96 (252)
T 4hxt_A 84 DAGGVEVLVKLLT 96 (252)
T ss_dssp HTTHHHHHHHHTT
T ss_pred HCCCHHHHHHHHc
Confidence 135677766665
No 36
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=20.33 E-value=3.6e+02 Score=22.05 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=42.2
Q ss_pred cCCcceEEeeCCCCCCeeEEEEEEEEeCC-eEEEEeCcccceeeccCCCCceEEEEecCCCccceeeEEEEee
Q 004221 183 IRRARCWFPCIDDTTQRCCYDLEFTVSQN-LIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (767)
Q Consensus 183 p~~Ar~~FPC~D~p~~katf~l~i~~p~~-~~aisng~l~~~~~~~~~~~~~~~~f~~t~p~s~yliafavg~ 254 (767)
....+.|.|-+|. .+..|...++ +-+.+||..++..-.=.++|. ..+|... ..+.|+.|...|+
T Consensus 9 ~k~~~tW~~~~~G------~~~RIvLeK~tmdVwvNG~~iet~geFvd~GT-et~F~lg-~~~c~I~a~sSG~ 73 (94)
T 2kd2_A 9 SKTTSTWVLRLDG------EDLRVVLEKDTMDVWCNGQKMETAGEFVDDGT-ETHFSVG-NHDCYIKAVSSGK 73 (94)
T ss_dssp CTTEEEEEEEETT------EEEEEEEETTTTEEEESSSBCCCCCEECSSSE-EEEEEET-TEEEEEEEEEESS
T ss_pred hhheeEEEEEeCC------CEEEEEEecCcEEEEECCEEeEEeeEEecCCc-EEEEEeC-CceEEEEEEecCC
Confidence 3456789998875 2566677776 899999998865311123343 4477764 4567777777765
Done!