Query 004222
Match_columns 767
No_of_seqs 438 out of 3207
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 19:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 1E-119 2E-124 1026.6 67.6 756 9-766 6-772 (868)
2 PLN02270 phospholipase D alpha 100.0 3E-106 7E-111 918.2 61.8 691 13-766 4-711 (808)
3 PLN02352 phospholipase D epsil 100.0 7E-101 2E-105 873.6 59.3 636 10-754 3-651 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 1.4E-89 3.1E-94 775.7 50.7 679 7-766 66-757 (887)
5 PLN02866 phospholipase D 100.0 5.9E-66 1.3E-70 596.8 44.2 466 203-756 321-913 (1068)
6 PRK12452 cardiolipin synthetas 100.0 3.1E-51 6.6E-56 466.1 30.4 336 203-753 131-466 (509)
7 PRK01642 cls cardiolipin synth 100.0 3.4E-50 7.4E-55 457.2 31.9 332 203-753 107-440 (483)
8 PRK11263 cardiolipin synthase 100.0 7.6E-49 1.6E-53 434.4 29.8 326 207-753 3-328 (411)
9 PHA02820 phospholipase-D-like 100.0 1E-38 2.2E-43 355.1 28.9 326 241-750 25-360 (424)
10 PRK09428 pssA phosphatidylseri 100.0 1.1E-38 2.5E-43 355.5 25.0 366 208-765 21-408 (451)
11 COG1502 Cls Phosphatidylserine 100.0 1.4E-36 3E-41 344.5 29.0 338 209-754 57-396 (438)
12 PHA03003 palmytilated EEV memb 100.0 5.4E-36 1.2E-40 329.5 28.5 317 241-753 30-349 (369)
13 PRK05443 polyphosphate kinase; 99.9 6E-21 1.3E-25 222.0 24.9 272 240-753 346-634 (691)
14 cd04015 C2_plant_PLD C2 domain 99.9 3.2E-21 6.9E-26 187.5 16.0 157 12-180 2-158 (158)
15 TIGR03705 poly_P_kin polyphosp 99.9 8.5E-21 1.8E-25 219.4 20.9 268 241-753 338-625 (672)
16 cd04016 C2_Tollip C2 domain pr 99.8 1.1E-18 2.3E-23 161.5 14.0 117 17-179 2-121 (121)
17 KOG3603 Predicted phospholipas 99.8 2.1E-17 4.6E-22 175.6 25.4 342 242-751 72-419 (456)
18 cd04042 C2A_MCTP_PRT C2 domain 99.8 2E-17 4.3E-22 153.8 15.3 120 18-181 1-121 (121)
19 cd08379 C2D_MCTP_PRT_plant C2 99.7 3.6E-17 7.7E-22 152.4 14.4 115 18-175 1-125 (126)
20 cd08682 C2_Rab11-FIP_classI C2 99.7 3.3E-17 7.1E-22 153.5 13.5 117 19-178 1-126 (126)
21 cd04013 C2_SynGAP_like C2 doma 99.7 1.3E-16 2.7E-21 151.8 15.5 126 14-186 8-145 (146)
22 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.9E-16 4E-21 148.4 15.8 120 17-182 4-125 (126)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.3E-16 2.7E-21 148.4 14.0 119 19-179 2-121 (121)
24 cd08681 C2_fungal_Inn1p-like C 99.7 1.2E-16 2.5E-21 147.9 11.5 116 17-179 1-118 (118)
25 cd08678 C2_C21orf25-like C2 do 99.7 5.7E-16 1.2E-20 145.1 15.0 105 80-184 18-124 (126)
26 cd04019 C2C_MCTP_PRT_plant C2 99.7 6.2E-16 1.3E-20 149.0 14.2 122 18-182 1-134 (150)
27 cd04022 C2A_MCTP_PRT_plant C2 99.7 7.4E-16 1.6E-20 144.5 13.4 119 18-180 1-126 (127)
28 cd04014 C2_PKC_epsilon C2 doma 99.7 1.9E-15 4.2E-20 142.7 14.8 127 15-182 2-131 (132)
29 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.1E-15 2.4E-20 142.0 12.8 97 80-179 17-119 (121)
30 cd08376 C2B_MCTP_PRT C2 domain 99.6 2.9E-15 6.3E-20 138.1 15.3 113 18-180 1-115 (116)
31 cd04044 C2A_Tricalbin-like C2 99.6 1.2E-15 2.5E-20 142.3 12.6 120 17-181 2-124 (124)
32 cd04036 C2_cPLA2 C2 domain pre 99.6 1.8E-15 4E-20 140.2 13.7 113 19-179 2-117 (119)
33 cd08677 C2A_Synaptotagmin-13 C 99.6 7.6E-16 1.6E-20 140.6 10.7 100 15-159 12-118 (118)
34 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 2.4E-15 5.2E-20 139.8 14.2 117 19-178 2-120 (121)
35 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 1.6E-15 3.4E-20 143.4 12.9 120 18-180 1-133 (133)
36 cd00138 PLDc Phospholipase D. 99.6 1.8E-15 3.9E-20 149.8 13.8 145 241-459 20-169 (176)
37 cd08377 C2C_MCTP_PRT C2 domain 99.6 3.9E-15 8.5E-20 137.8 15.0 117 17-179 1-118 (119)
38 PRK12452 cardiolipin synthetas 99.6 5.8E-16 1.2E-20 177.2 10.7 145 235-460 337-481 (509)
39 KOG1030 Predicted Ca2+-depende 99.6 8E-16 1.7E-20 145.7 9.4 97 14-153 3-100 (168)
40 cd04024 C2A_Synaptotagmin-like 99.6 4.4E-15 9.5E-20 139.2 14.0 120 17-179 1-128 (128)
41 cd08381 C2B_PI3K_class_II C2 d 99.6 3E-15 6.4E-20 139.4 12.1 105 12-159 8-121 (122)
42 cd08375 C2_Intersectin C2 doma 99.6 7.4E-15 1.6E-19 139.3 14.6 114 17-179 15-135 (136)
43 cd08391 C2A_C2C_Synaptotagmin_ 99.6 5.7E-15 1.2E-19 137.0 13.4 120 17-179 1-121 (121)
44 cd04028 C2B_RIM1alpha C2 domai 99.6 5.1E-15 1.1E-19 141.2 13.3 108 13-162 25-139 (146)
45 cd08395 C2C_Munc13 C2 domain t 99.6 3.8E-15 8.2E-20 137.6 11.9 100 18-160 1-111 (120)
46 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 7.1E-15 1.5E-19 137.0 13.2 117 18-177 1-122 (123)
47 PHA03003 palmytilated EEV memb 99.6 3.9E-15 8.4E-20 164.3 13.3 147 243-460 217-364 (369)
48 cd04046 C2_Calpain C2 domain p 99.6 2.5E-14 5.3E-19 134.0 15.6 122 16-182 2-124 (126)
49 PHA02820 phospholipase-D-like 99.6 1.2E-14 2.5E-19 162.6 13.9 150 520-752 4-154 (424)
50 cd08373 C2A_Ferlin C2 domain f 99.6 3.1E-14 6.8E-19 133.5 14.6 103 80-185 15-121 (127)
51 PRK13912 nuclease NucT; Provis 99.6 3E-14 6.6E-19 141.3 14.9 141 241-459 32-174 (177)
52 cd08387 C2A_Synaptotagmin-8 C2 99.6 1.5E-14 3.2E-19 135.1 11.3 102 16-159 15-122 (124)
53 cd08685 C2_RGS-like C2 domain 99.6 1.2E-14 2.7E-19 134.5 10.7 104 13-159 8-119 (119)
54 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.1E-14 4.5E-19 134.1 11.9 103 15-159 14-122 (124)
55 cd08393 C2A_SLP-1_2 C2 domain 99.6 1.8E-14 3.9E-19 134.7 11.0 101 17-159 15-124 (125)
56 cd08688 C2_KIAA0528-like C2 do 99.6 1.7E-14 3.8E-19 131.7 10.3 100 19-161 1-109 (110)
57 cd04043 C2_Munc13_fungal C2 do 99.6 9.1E-14 2E-18 130.1 15.0 115 18-182 2-123 (126)
58 cd04050 C2B_Synaptotagmin-like 99.5 4.1E-14 8.9E-19 128.1 12.2 96 19-159 2-100 (105)
59 cd04029 C2A_SLP-4_5 C2 domain 99.5 3.2E-14 6.9E-19 133.0 11.5 104 15-159 13-124 (125)
60 cd08382 C2_Smurf-like C2 domai 99.5 4.6E-14 1E-18 131.6 12.2 117 18-177 1-122 (123)
61 cd08392 C2A_SLP-3 C2 domain fi 99.5 2.9E-14 6.3E-19 133.7 10.4 102 16-159 14-127 (128)
62 cd04017 C2D_Ferlin C2 domain f 99.5 1.1E-13 2.3E-18 131.3 14.4 118 18-182 2-134 (135)
63 cd04027 C2B_Munc13 C2 domain s 99.5 7E-14 1.5E-18 131.1 12.9 114 18-177 2-127 (127)
64 cd04045 C2C_Tricalbin-like C2 99.5 5.6E-14 1.2E-18 130.4 11.9 104 17-163 1-105 (120)
65 cd08680 C2_Kibra C2 domain fou 99.5 3.7E-14 7.9E-19 132.0 10.5 102 16-159 13-124 (124)
66 cd04010 C2B_RasA3 C2 domain se 99.5 5.1E-14 1.1E-18 135.1 11.6 83 80-162 19-123 (148)
67 cd08394 C2A_Munc13 C2 domain f 99.5 7.8E-14 1.7E-18 128.6 12.0 97 17-160 2-100 (127)
68 cd08690 C2_Freud-1 C2 domain f 99.5 1.3E-13 2.9E-18 132.5 14.2 99 80-181 25-138 (155)
69 cd04051 C2_SRC2_like C2 domain 99.5 4.9E-14 1.1E-18 131.7 10.9 113 18-175 1-125 (125)
70 cd04039 C2_PSD C2 domain prese 99.5 8E-14 1.7E-18 126.8 11.1 96 17-151 1-99 (108)
71 cd04041 C2A_fungal C2 domain f 99.5 4.2E-14 9.1E-19 129.4 9.3 98 17-159 1-106 (111)
72 cd08383 C2A_RasGAP C2 domain ( 99.5 2E-13 4.4E-18 125.8 13.8 96 80-179 18-117 (117)
73 cd04030 C2C_KIAA1228 C2 domain 99.5 9.5E-14 2.1E-18 130.1 11.2 101 17-159 16-126 (127)
74 cd04040 C2D_Tricalbin-like C2 99.5 1.9E-13 4.2E-18 125.6 13.0 111 19-174 1-113 (115)
75 cd08388 C2A_Synaptotagmin-4-11 99.5 1.7E-13 3.6E-18 128.7 12.7 102 16-159 15-126 (128)
76 cd08521 C2A_SLP C2 domain firs 99.5 9.1E-14 2E-18 129.4 10.7 102 16-159 13-123 (123)
77 cd04031 C2A_RIM1alpha C2 domai 99.5 1.2E-13 2.6E-18 129.0 11.3 101 16-159 15-124 (125)
78 PRK01642 cls cardiolipin synth 99.5 7.3E-14 1.6E-18 159.7 11.8 147 232-460 308-455 (483)
79 cd08386 C2A_Synaptotagmin-7 C2 99.5 1.8E-13 3.8E-18 127.9 11.9 102 16-159 15-123 (125)
80 cd04052 C2B_Tricalbin-like C2 99.5 2.2E-13 4.9E-18 124.6 11.8 101 76-182 9-111 (111)
81 PRK13912 nuclease NucT; Provis 99.5 5.1E-14 1.1E-18 139.6 7.8 128 560-753 32-160 (177)
82 cd04018 C2C_Ferlin C2 domain t 99.5 2E-13 4.4E-18 131.2 11.6 116 18-162 1-126 (151)
83 cd08407 C2B_Synaptotagmin-13 C 99.5 3.5E-14 7.6E-19 134.4 5.3 110 15-166 13-130 (138)
84 cd08390 C2A_Synaptotagmin-15-1 99.5 3.4E-13 7.3E-18 125.6 11.4 102 16-159 13-121 (123)
85 KOG1028 Ca2+-dependent phospho 99.5 4.2E-13 9.2E-18 149.8 13.9 126 15-182 165-296 (421)
86 cd08692 C2B_Tac2-N C2 domain s 99.5 1.4E-13 3E-18 128.8 8.1 109 15-166 12-128 (135)
87 cd08389 C2A_Synaptotagmin-14_1 99.5 4.6E-13 1E-17 125.0 11.5 100 17-159 16-122 (124)
88 cd04049 C2_putative_Elicitor-r 99.5 4.3E-13 9.3E-18 125.2 11.1 101 17-160 1-107 (124)
89 cd08406 C2B_Synaptotagmin-12 C 99.5 1.1E-13 2.3E-18 131.2 7.0 107 16-166 14-128 (136)
90 cd04011 C2B_Ferlin C2 domain s 99.4 6.1E-13 1.3E-17 121.7 11.4 81 80-161 21-110 (111)
91 cd08384 C2B_Rabphilin_Doc2 C2 99.4 1.4E-13 3.1E-18 130.1 6.8 107 16-166 12-126 (133)
92 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.4 4.8E-13 1E-17 130.7 10.5 103 15-159 25-136 (162)
93 cd04038 C2_ArfGAP C2 domain pr 99.4 8.2E-13 1.8E-17 126.3 11.6 92 17-152 2-94 (145)
94 cd08675 C2B_RasGAP C2 domain s 99.4 6.7E-13 1.5E-17 126.1 10.8 100 19-161 1-120 (137)
95 cd08676 C2A_Munc13-like C2 dom 99.4 6.5E-13 1.4E-17 127.9 10.3 100 14-159 25-153 (153)
96 cd04032 C2_Perforin C2 domain 99.4 8.1E-13 1.8E-17 123.3 10.5 91 15-149 26-119 (127)
97 cd08404 C2B_Synaptotagmin-4 C2 99.4 2.6E-13 5.7E-18 128.8 7.3 106 16-165 14-127 (136)
98 cd08402 C2B_Synaptotagmin-1 C2 99.4 1.8E-13 3.9E-18 129.9 5.8 108 15-166 13-128 (136)
99 cd04021 C2_E3_ubiquitin_ligase 99.4 3.3E-12 7.2E-17 119.4 13.4 97 80-177 22-124 (125)
100 PRK11263 cardiolipin synthase 99.4 1.2E-12 2.6E-17 145.9 11.7 135 241-457 205-340 (411)
101 cd00138 PLDc Phospholipase D. 99.4 9.2E-13 2E-17 130.4 9.7 131 559-751 19-152 (176)
102 PF13091 PLDc_2: PLD-like doma 99.4 2.3E-12 5.1E-17 120.2 11.8 124 247-456 1-126 (126)
103 cd08405 C2B_Synaptotagmin-7 C2 99.4 4.7E-13 1E-17 127.0 6.9 108 15-166 13-128 (136)
104 cd00275 C2_PLC_like C2 domain 99.4 5.2E-12 1.1E-16 118.3 13.9 116 18-179 3-127 (128)
105 cd04026 C2_PKC_alpha_gamma C2 99.4 2.4E-12 5.2E-17 121.3 11.5 108 12-162 8-122 (131)
106 cd00276 C2B_Synaptotagmin C2 d 99.4 3.8E-13 8.2E-18 127.1 6.0 106 17-166 14-127 (134)
107 cd08403 C2B_Synaptotagmin-3-5- 99.4 4.3E-13 9.3E-18 127.0 6.1 108 15-166 12-127 (134)
108 cd08691 C2_NEDL1-like C2 domai 99.4 6.2E-12 1.3E-16 119.1 13.8 115 18-177 2-136 (137)
109 KOG0696 Serine/threonine prote 99.4 2.4E-13 5.2E-18 143.7 4.5 106 14-162 177-289 (683)
110 cd04009 C2B_Munc13-like C2 dom 99.4 2.7E-12 5.9E-17 121.3 10.5 91 17-149 16-118 (133)
111 cd08409 C2B_Synaptotagmin-15 C 99.4 9.7E-13 2.1E-17 125.0 6.9 106 16-164 14-127 (137)
112 cd08410 C2B_Synaptotagmin-17 C 99.4 6.3E-13 1.4E-17 126.0 5.5 109 15-166 12-128 (135)
113 cd04037 C2E_Ferlin C2 domain f 99.3 3.6E-12 7.9E-17 119.0 9.7 117 19-182 2-121 (124)
114 cd08686 C2_ABR C2 domain in th 99.3 1.3E-11 2.7E-16 112.6 12.4 66 80-146 15-92 (118)
115 PF13091 PLDc_2: PLD-like doma 99.3 2.1E-12 4.5E-17 120.5 7.5 115 566-753 1-115 (126)
116 cd04048 C2A_Copine C2 domain f 99.3 7.5E-12 1.6E-16 116.1 10.9 80 80-159 21-112 (120)
117 cd08408 C2B_Synaptotagmin-14_1 99.3 1.4E-12 3E-17 124.0 6.0 106 16-164 14-128 (138)
118 PLN03200 cellulose synthase-in 99.3 4.1E-12 9E-17 160.0 11.5 121 13-181 1976-2101(2102)
119 cd04035 C2A_Rabphilin_Doc2 C2 99.3 1.3E-11 2.8E-16 115.0 11.7 101 16-158 14-122 (123)
120 KOG2059 Ras GTPase-activating 99.3 5.6E-12 1.2E-16 140.8 9.4 128 16-187 4-132 (800)
121 cd04047 C2B_Copine C2 domain s 99.1 2E-10 4.3E-15 104.8 9.7 69 80-149 21-100 (110)
122 PF00168 C2: C2 domain; Inter 99.1 3E-10 6.5E-15 97.5 7.6 81 19-141 1-85 (85)
123 KOG1011 Neurotransmitter relea 99.0 3.9E-10 8.3E-15 124.0 7.6 121 15-181 293-425 (1283)
124 cd00030 C2 C2 domain. The C2 d 99.0 2.5E-09 5.5E-14 93.7 10.3 80 80-159 20-102 (102)
125 KOG1031 Predicted Ca2+-depende 99.0 1.6E-09 3.5E-14 118.0 10.7 169 15-239 1-184 (1169)
126 KOG3603 Predicted phospholipas 99.0 3E-09 6.5E-14 114.1 12.3 163 232-461 270-441 (456)
127 PRK05443 polyphosphate kinase; 99.0 1.7E-09 3.8E-14 126.8 11.5 119 564-753 351-481 (691)
128 COG1502 Cls Phosphatidylserine 99.0 3E-09 6.4E-14 121.0 11.8 137 245-460 273-410 (438)
129 smart00239 C2 Protein kinase C 99.0 4.2E-09 9E-14 92.8 10.0 73 80-152 21-97 (101)
130 PLN02223 phosphoinositide phos 98.9 1E-08 2.3E-13 115.1 14.6 96 80-179 435-536 (537)
131 COG5038 Ca2+-dependent lipid-b 98.9 6E-09 1.3E-13 123.1 9.9 124 15-182 1038-1163(1227)
132 KOG1028 Ca2+-dependent phospho 98.9 2E-09 4.4E-14 120.5 5.8 107 16-166 297-411 (421)
133 PLN02952 phosphoinositide phos 98.9 2.3E-08 5E-13 114.7 14.3 96 80-179 497-598 (599)
134 COG5038 Ca2+-dependent lipid-b 98.8 1.3E-08 2.8E-13 120.3 11.5 132 16-191 435-568 (1227)
135 cd08374 C2F_Ferlin C2 domain s 98.8 1.6E-08 3.5E-13 94.8 9.3 72 80-151 25-125 (133)
136 PLN02230 phosphoinositide phos 98.8 4.4E-08 9.5E-13 112.2 13.6 96 80-179 496-597 (598)
137 KOG0169 Phosphoinositide-speci 98.7 4.8E-08 1E-12 111.7 11.6 98 80-181 641-745 (746)
138 PLN02228 Phosphoinositide phos 98.7 1E-07 2.2E-12 108.9 14.2 99 80-182 458-563 (567)
139 PRK09428 pssA phosphatidylseri 98.7 7.1E-08 1.5E-12 108.7 12.8 143 241-458 250-407 (451)
140 PLN02222 phosphoinositide phos 98.7 1.3E-07 2.8E-12 108.2 14.7 96 80-179 479-580 (581)
141 cd08689 C2_fungal_Pkc1p C2 dom 98.6 3.1E-07 6.8E-12 81.2 8.7 65 80-148 23-87 (109)
142 PF00614 PLDc: Phospholipase D 98.5 2.8E-08 6E-13 66.4 1.5 25 364-396 3-27 (28)
143 smart00155 PLDc Phospholipase 98.5 5.8E-08 1.3E-12 65.5 3.1 26 709-734 3-28 (28)
144 KOG3964 Phosphatidylglycerolph 98.5 1E-06 2.2E-11 93.6 12.9 128 241-398 38-170 (469)
145 PF13918 PLDc_3: PLD-like doma 98.4 5.7E-06 1.2E-10 80.6 15.3 60 561-634 82-147 (177)
146 PF07894 DUF1669: Protein of u 98.3 5.4E-06 1.2E-10 86.4 12.0 154 210-456 117-278 (284)
147 KOG1264 Phospholipase C [Lipid 98.3 4.4E-06 9.6E-11 95.1 11.0 125 14-185 1062-1194(1267)
148 KOG1328 Synaptic vesicle prote 98.2 5.2E-07 1.1E-11 101.4 2.0 91 16-148 946-1048(1103)
149 cd08683 C2_C2cd3 C2 domain fou 98.1 2.5E-06 5.5E-11 77.7 4.4 81 79-159 32-143 (143)
150 PF00614 PLDc: Phospholipase D 98.1 9.3E-07 2E-11 59.2 1.2 26 709-734 3-28 (28)
151 TIGR03705 poly_P_kin polyphosp 98.0 4E-05 8.6E-10 90.1 12.0 119 564-753 342-472 (672)
152 PF13090 PP_kinase_C: Polyphos 98.0 0.00089 1.9E-08 71.6 20.3 138 242-455 18-161 (352)
153 KOG1328 Synaptic vesicle prote 97.9 3.1E-06 6.8E-11 95.4 1.4 90 94-185 179-306 (1103)
154 smart00155 PLDc Phospholipase 97.9 1.2E-05 2.6E-10 54.2 2.8 24 364-395 3-26 (28)
155 KOG2059 Ras GTPase-activating 97.6 0.00011 2.4E-09 83.5 7.4 109 78-186 149-282 (800)
156 KOG0905 Phosphoinositide 3-kin 97.6 5.1E-05 1.1E-09 89.9 4.2 106 12-159 1519-1633(1639)
157 PF13918 PLDc_3: PLD-like doma 97.6 0.00035 7.6E-09 68.3 9.0 69 227-305 71-140 (177)
158 PF07894 DUF1669: Protein of u 97.5 0.00063 1.4E-08 71.2 11.0 132 559-748 132-263 (284)
159 PLN02866 phospholipase D 97.5 0.00046 1E-08 83.1 10.1 61 560-628 343-404 (1068)
160 COG0855 Ppk Polyphosphate kina 97.3 0.021 4.6E-07 65.4 20.6 138 240-453 350-493 (696)
161 KOG1326 Membrane-associated pr 97.3 0.00019 4.1E-09 84.4 3.8 88 17-146 613-703 (1105)
162 PLN02352 phospholipase D epsil 97.2 0.0014 2.9E-08 77.4 9.9 63 241-305 452-519 (758)
163 KOG3837 Uncharacterized conser 97.1 0.00033 7.2E-09 75.2 3.8 98 80-180 388-503 (523)
164 KOG1329 Phospholipase D1 [Lipi 97.1 0.0017 3.7E-08 76.5 9.7 155 234-400 558-728 (887)
165 KOG1013 Synaptic vesicle prote 97.0 0.00016 3.5E-09 75.7 -0.1 125 17-183 93-232 (362)
166 KOG1013 Synaptic vesicle prote 97.0 0.0008 1.7E-08 70.7 4.8 100 16-159 232-339 (362)
167 KOG1011 Neurotransmitter relea 97.0 0.0021 4.5E-08 72.2 8.1 80 80-159 1145-1235(1283)
168 PLN02964 phosphatidylserine de 96.9 0.0014 3E-08 76.7 6.6 85 80-164 68-156 (644)
169 PLN03008 Phospholipase D delta 96.8 0.0025 5.4E-08 75.5 7.8 71 232-305 556-633 (868)
170 KOG2060 Rab3 effector RIM1 and 96.8 0.0018 4E-08 69.1 5.6 108 16-164 268-382 (405)
171 COG3886 Predicted HKD family n 96.6 0.027 6E-07 55.1 11.7 141 241-458 38-179 (198)
172 PLN02270 phospholipase D alpha 96.4 0.008 1.7E-07 71.3 8.1 65 241-305 498-569 (808)
173 KOG1327 Copine [Signal transdu 96.2 0.0066 1.4E-07 68.5 5.7 113 80-196 157-284 (529)
174 PF11495 Regulator_TrmB: Archa 96.0 0.036 7.9E-07 57.6 9.7 50 241-307 9-58 (233)
175 cd08684 C2A_Tac2-N C2 domain f 95.9 0.0066 1.4E-07 51.9 3.0 74 82-158 23-102 (103)
176 KOG1326 Membrane-associated pr 95.6 0.0023 5.1E-08 75.6 -1.1 100 17-160 206-316 (1105)
177 PF13090 PP_kinase_C: Polyphos 95.2 0.05 1.1E-06 58.6 7.4 94 605-753 50-151 (352)
178 KOG1265 Phospholipase C [Lipid 95.2 0.1 2.2E-06 61.5 10.1 101 14-166 700-810 (1189)
179 PF10358 NT-C2: N-terminal C2 94.8 0.92 2E-05 43.0 14.2 104 81-188 25-143 (143)
180 PF12416 DUF3668: Cep120 prote 94.5 0.43 9.3E-06 52.1 12.5 104 80-184 18-136 (340)
181 COG0855 Ppk Polyphosphate kina 93.1 0.24 5.1E-06 57.1 7.4 94 606-753 385-485 (696)
182 cd08687 C2_PKN-like C2 domain 92.1 1 2.3E-05 39.1 8.2 84 80-179 9-92 (98)
183 PF15627 CEP76-C2: CEP76 C2 do 92.0 1.6 3.4E-05 42.1 10.5 101 83-184 37-154 (156)
184 COG3886 Predicted HKD family n 91.6 0.92 2E-05 44.7 8.5 120 560-750 38-160 (198)
185 cd08693 C2_PI3K_class_I_beta_d 91.3 4.1 8.8E-05 40.3 13.0 69 80-148 27-121 (173)
186 KOG1452 Predicted Rho GTPase-a 91.3 0.57 1.2E-05 49.3 7.0 118 11-179 45-166 (442)
187 cd08398 C2_PI3K_class_I_alpha 90.8 1.4 2.9E-05 43.0 8.9 68 80-148 26-107 (158)
188 cd08397 C2_PI3K_class_III C2 d 89.0 1.3 2.9E-05 43.1 7.2 69 79-147 29-107 (159)
189 PF09565 RE_NgoFVII: NgoFVII r 86.3 7.2 0.00016 41.9 11.4 41 708-750 78-123 (296)
190 cd08380 C2_PI3K_like C2 domain 85.6 4 8.8E-05 39.4 8.5 69 80-148 28-108 (156)
191 cd04012 C2A_PI3K_class_II C2 d 84.4 5.9 0.00013 39.0 9.2 69 80-148 29-120 (171)
192 PF11495 Regulator_TrmB: Archa 82.9 3.5 7.5E-05 42.8 7.2 51 559-629 8-58 (233)
193 PF00792 PI3K_C2: Phosphoinosi 81.6 7.3 0.00016 37.0 8.3 68 81-148 3-86 (142)
194 cd08399 C2_PI3K_class_I_gamma 80.6 13 0.00028 36.9 9.8 49 82-130 32-88 (178)
195 PF15625 CC2D2AN-C2: CC2D2A N- 79.5 7.1 0.00015 38.4 7.6 76 73-148 30-107 (168)
196 PF06087 Tyr-DNA_phospho: Tyro 79.5 0.95 2.1E-05 51.7 1.7 42 707-749 345-403 (443)
197 PF14429 DOCK-C2: C2 domain in 76.1 5.7 0.00012 39.6 5.9 55 92-146 59-120 (184)
198 KOG3964 Phosphatidylglycerolph 74.8 4.2 9E-05 44.5 4.7 56 560-631 38-93 (469)
199 KOG0694 Serine/threonine prote 74.1 1.6 3.4E-05 51.1 1.5 96 80-184 28-125 (694)
200 cd08695 C2_Dock-B C2 domains f 72.9 20 0.00043 35.9 8.7 52 93-144 54-111 (189)
201 smart00142 PI3K_C2 Phosphoinos 72.9 22 0.00047 31.6 8.2 51 80-130 32-91 (100)
202 PF11618 DUF3250: Protein of u 69.5 35 0.00077 30.9 8.8 93 83-179 2-104 (107)
203 cd08697 C2_Dock-D C2 domains f 63.2 28 0.00061 34.7 7.5 39 92-130 56-97 (185)
204 cd08696 C2_Dock-C C2 domains f 55.4 26 0.00056 34.8 5.7 40 92-131 54-96 (179)
205 cd08694 C2_Dock-A C2 domains f 55.3 19 0.00042 36.1 4.8 53 92-144 53-113 (196)
206 cd08679 C2_DOCK180_related C2 50.4 25 0.00054 34.8 4.9 52 95-146 55-115 (178)
207 KOG1327 Copine [Signal transdu 49.0 19 0.00042 41.4 4.2 59 91-149 40-104 (529)
208 KOG1466 Translation initiation 44.1 20 0.00044 37.3 3.0 75 248-343 110-186 (313)
209 cd05137 RasGAP_CLA2_BUD2 CLA2/ 42.7 31 0.00067 38.8 4.5 49 136-186 1-50 (395)
210 COG1489 SfsA DNA-binding prote 38.1 1E+02 0.0022 31.9 6.9 56 245-305 155-212 (235)
211 PF06219 DUF1005: Protein of u 37.3 4.1E+02 0.0089 29.9 11.8 78 120-200 95-184 (460)
212 KOG1467 Translation initiation 33.4 53 0.0012 37.3 4.4 47 285-344 370-416 (556)
213 PF09345 DUF1987: Domain of un 33.3 56 0.0012 29.2 3.8 21 285-306 63-83 (99)
214 TIGR00230 sfsA sugar fermentat 31.3 1.2E+02 0.0025 31.6 6.3 57 242-305 157-213 (232)
215 COG1184 GCD2 Translation initi 30.4 92 0.002 33.6 5.5 46 285-343 130-175 (301)
216 PF10409 PTEN_C2: C2 domain of 28.9 4.3E+02 0.0092 24.4 9.3 69 80-148 25-98 (134)
217 cd02685 MIT_C MIT_C; domain fo 26.4 5.9E+02 0.013 24.5 10.8 78 563-669 8-87 (148)
218 COG1378 Predicted transcriptio 25.7 99 0.0022 32.4 4.7 48 241-305 119-166 (247)
219 PF09565 RE_NgoFVII: NgoFVII r 25.6 5.2E+02 0.011 27.9 10.2 26 365-395 80-106 (296)
220 PTZ00447 apical membrane antig 23.8 5.3E+02 0.012 28.2 9.5 94 80-178 74-171 (508)
221 KOG3543 Ca2+-dependent activat 22.0 3.9E+02 0.0085 31.4 8.6 92 82-178 362-457 (1218)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=1.1e-119 Score=1026.61 Aligned_cols=756 Identities=74% Similarity=1.236 Sum_probs=653.3
Q ss_pred CceeEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEE
Q 004222 9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV 88 (767)
Q Consensus 9 ~~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~ 88 (767)
..++.++||+|+++|++|++||+||+.+++++.+|..+..|..+.++........+..+--++-...+..++||||+|.+
T Consensus 6 ~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~L 85 (868)
T PLN03008 6 SEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVV 85 (868)
T ss_pred ccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEE
Confidence 45789999999999999999999999999999999877666544322111111111111112222334568999999999
Q ss_pred CCeeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCCCCCC
Q 004222 89 PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (767)
Q Consensus 89 ~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~ 168 (767)
+++++.||+++.++.||+|||+|.|.+.++...|+|+|+|+|.+++++||.+.|||+++..|+..+.|++|+...+++.+
T Consensus 86 g~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k 165 (868)
T PLN03008 86 PQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPK 165 (868)
T ss_pred CCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCC
Confidence 98888899999999999999999999999888899999999999999999999999999999999999999998888888
Q ss_pred CCceEEEEEEEEecCCCCccccccCCCCCCCCccccccccccCCceeEeeeccccCCCCCceecCCCCccCccchHHHHH
Q 004222 169 PGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDIC 248 (767)
Q Consensus 169 ~~g~i~l~l~y~p~~~~p~f~~gi~~~~ef~~v~~s~~p~~~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l~ 248 (767)
..++|+++|+|.|..+++.|..|++++++|.||+.+.+|.+.|++|++|+|+|.++++.|.+.+++|+.|++..+|+.++
T Consensus 166 ~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi~ 245 (868)
T PLN03008 166 AETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDIC 245 (868)
T ss_pred CCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcH
Q 004222 249 HAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDE 328 (767)
Q Consensus 249 ~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~ 328 (767)
+||.+||+.|||+.|.++|.++|+|++.. +.+++.+|.++|++||++||+|.||+||+..|+...+++..|+|.++++
T Consensus 246 ~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thde 323 (868)
T PLN03008 246 YAISEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDE 323 (868)
T ss_pred HHHHhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccH
Confidence 99999999999999999999999998752 2223489999999999999999999999999886667888999999999
Q ss_pred HHHhhhcCCCceEEecccccCcccchhhhc-----------cccceeeccceEEEeccCCCCCCcceEEEEccccCCCcc
Q 004222 329 ETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (767)
Q Consensus 329 ~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~-----------~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r 397 (767)
++.+++++.+|.|.+.|+++.....++++. ...+.++||||++|||+.+++++++.+|||||+|++.+|
T Consensus 324 et~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gR 403 (868)
T PLN03008 324 ETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGR 403 (868)
T ss_pred HHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCc
Confidence 999999999999999998776666666652 233679999999999998788899999999999999999
Q ss_pred cCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhcccccccc
Q 004222 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRD 477 (767)
Q Consensus 398 ~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~ 477 (767)
|||+.|.+++++.+++++||+||++.++...++++|||+|++|+||+|.+|+.+|.++|+.+++..++....+....|.+
T Consensus 404 wDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~~ 483 (868)
T PLN03008 404 YDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQD 483 (868)
T ss_pred cCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCcccccccccccccccc
Confidence 99999999999999999999999987666678899999999999999999999999999999886433334455557888
Q ss_pred chhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccccCCcc
Q 004222 478 DYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVV 557 (767)
Q Consensus 478 ~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 557 (767)
+.|+++.++.+++.|....++.+....+...+........+++++.+|++||++.|++.++|..++....+++.|+++..
T Consensus 484 d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ 563 (868)
T PLN03008 484 DALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLV 563 (868)
T ss_pred chhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccc
Confidence 99999988887776643221111111111111111111245688899999999999999999998888889999999999
Q ss_pred chhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCC
Q 004222 558 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKT 637 (767)
Q Consensus 558 ~~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~ 637 (767)
.+.||+.+|+++|++|||+||||||||+++.+.|+...+.++.|+|+.+++++|+++++++++++|.||+|.+|+|++.+
T Consensus 564 ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~s 643 (868)
T PLN03008 564 VDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKS 643 (868)
T ss_pred hhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCCc
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEE
Q 004222 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (767)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~I 717 (767)
+.++.+++|++++|..+|..+.+.|++.|...+|.+||+||++++++.........++..+..+++.++..+|+|||+||
T Consensus 644 g~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK~~i 723 (868)
T PLN03008 644 GPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAKGMI 723 (868)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeeeEEE
Confidence 99999999999999999999999999988767899999999999998654323333343444445556668999999999
Q ss_pred EeeeEeeeccCCcCCcCCCCCCCccceeeecCCccchhcccCCCCCCcc
Q 004222 718 VDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQVC 766 (767)
Q Consensus 718 VDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~~~~~~~~~~~~~~ 766 (767)
|||++++|||||||.|||.+++|+|+++.+++|...|+....+++||||
T Consensus 724 vDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~ 772 (868)
T PLN03008 724 VDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVY 772 (868)
T ss_pred ECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHH
Confidence 9999999999999999999888999999999999999988889999986
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=3e-106 Score=918.15 Aligned_cols=691 Identities=48% Similarity=0.855 Sum_probs=589.3
Q ss_pred EeeccEEEEEEEEeecCCCCCCcchhhhhhccccc-cCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe
Q 004222 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACD-VCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (767)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (767)
.++||+|+++|++|++||+++. .+.+++++.... .|+.. ..++||||+|.+++.
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~------------------------~~~~~~y~tv~~~~a 58 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGVG------------------------KGESQLYATIDLEKA 58 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccCC------------------------CCCCCceEEEEeCCc
Confidence 4899999999999999998654 444444443211 11111 124899999999999
Q ss_pred eeeeeccccCC-CCCeeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCCCCCCCC
Q 004222 92 TVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170 (767)
Q Consensus 92 ~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~ 170 (767)
+++||+++.+. .||.|+|+|.+++++....+.|+|+|.|.++..+||++.||+.++..|+.++.|++++...+++.+..
T Consensus 59 ~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~ 138 (808)
T PLN02270 59 RVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGG 138 (808)
T ss_pred EEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCC
Confidence 99999999984 69999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceEEEEEEEEecCCCCccccccCCCCCCCCccccccccccCCceeEeeeccccCCCCCceecCCCCccCccchHHHHHHH
Q 004222 171 ASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHA 250 (767)
Q Consensus 171 g~i~l~l~y~p~~~~p~f~~gi~~~~ef~~v~~s~~p~~~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~ 250 (767)
.+|+++++|.|...++.|..|+++ ++|.||+.+.+|.+.|++|++|+|+|.++++.|.+.+++|+.|++..+|+.++++
T Consensus 139 ~~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~A 217 (808)
T PLN02270 139 SKIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDA 217 (808)
T ss_pred CEEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHH
Confidence 899999999999999999999966 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHH
Q 004222 251 ISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEET 330 (767)
Q Consensus 251 I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~ 330 (767)
|.+||++|+|+.|.|++.++|+|++..+.+.+ ..+|.++|++||++||+|+||+||...+... ++..|+|.++++.+
T Consensus 218 I~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~~-~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t 294 (808)
T PLN02270 218 ITNAKHLIYITGWSVYTEISLVRDSRRPKPGG-DVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEET 294 (808)
T ss_pred HHhhhcEEEEEEeecCCCceEecCCCCCCCCC-cchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHH
Confidence 99999999999999999999999765433332 4799999999999999999999999877542 45578898888899
Q ss_pred HhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCC---CCCCcceEEEEccccCCCcccCCCCCCCcc
Q 004222 331 KKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA---SGNNRKITAFIGGIDLCDGRYDTPEHRLFR 407 (767)
Q Consensus 331 ~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~---~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~ 407 (767)
++++++.+|++.++++.|.....++.+......++||||++|||+++ .+++++.+|||||+|++++||||+.|++++
T Consensus 295 ~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~ 374 (808)
T PLN02270 295 ENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFR 374 (808)
T ss_pred HHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccc
Confidence 99999999999999888765444544444566789999999999974 346889999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCC---CCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhccccccccchhhhcc
Q 004222 408 DLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIG 484 (767)
Q Consensus 408 ~~~~~~~~d~~n~~~~~---~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 484 (767)
.+++.+.+||+||.|.. +.+.++++|||+|++|+||+|.+|+.+|.++|+.+++.. .+..+.
T Consensus 375 ~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~---------------ll~~~~ 439 (808)
T PLN02270 375 TLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD---------------ILVQLR 439 (808)
T ss_pred cccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc---------------chhhhc
Confidence 99999999999988753 456788999999999999999999999999999987752 111122
Q ss_pred ccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccccCCccchhHHHH
Q 004222 485 RISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQT 564 (767)
Q Consensus 485 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~ 564 (767)
++.++..|+. +. ..+.+.+++.+|++||++.|.+.++|..++....+|++++.+...+.+|+.
T Consensus 440 ~~~~~~~P~~----------~~-------~~p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~ 502 (808)
T PLN02270 440 ELEDVIIPPS----------PV-------MFPDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQD 502 (808)
T ss_pred ccccccCCCC----------cc-------cCCCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHH
Confidence 2222221210 00 002345778999999999999999999988888889888887777899999
Q ss_pred HHHHHHHhccceEEEeccccccccCCCccc----ccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCchh
Q 004222 565 AYIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTV 640 (767)
Q Consensus 565 ~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~----~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~~ 640 (767)
+|+.+|++||++||||||||++.++.|+.+ +..++.|+|+.+++++|+++++++++++|.||+|.||+|.++..++
T Consensus 503 aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~v 582 (808)
T PLN02270 503 AYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSV 582 (808)
T ss_pred HHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchH
Confidence 999999999999999999999999888644 5678899999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCC-----cccccCCCCcccccccCCccceEEeeeE
Q 004222 641 QEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP-----KDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (767)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~HsK~ 715 (767)
+.+++|++++|..+|..+.+.|+++|+..+|.+||+||++++++... |...+.++.++..++..++..+|+|||+
T Consensus 583 q~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~ 662 (808)
T PLN02270 583 QAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKM 662 (808)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeE
Confidence 99999999999999999999999999866899999999999988542 1112223333344444555689999999
Q ss_pred EEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCccchhcccCCCCCCcc
Q 004222 716 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQVC 766 (767)
Q Consensus 716 ~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~~~~~~~~~~~~~~ 766 (767)
|||||++++|||+|+|.|||.+++|+|++|..+.|...++. ..++++|+
T Consensus 663 ~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~~--~~~r~~i~ 711 (808)
T PLN02270 663 MIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTR--QPARGQIH 711 (808)
T ss_pred EEEcCCEEEEeccccccccccCCccchhhhcccCccccccc--cchHHHHH
Confidence 99999999999999999999999999999999888766443 35566664
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=6.9e-101 Score=873.56 Aligned_cols=636 Identities=45% Similarity=0.791 Sum_probs=529.2
Q ss_pred ceeEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC
Q 004222 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (767)
Q Consensus 10 ~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~ 89 (767)
++.-++||+|+++|.+|+ | ++.+|..+..|..- .||||+|.++
T Consensus 3 ~~~~~lhg~l~~~i~~~~--~--------~~~~~~~~~~~~~~---------------------------~~~y~tv~~~ 45 (758)
T PLN02352 3 EKQKFFHGTLEATIFDAT--P--------YTPPFPFNCIFLNG---------------------------KATYVTIKIG 45 (758)
T ss_pred ccccccccceEEEEEEee--e--------hhhcccccccccCC---------------------------CCceEEEEeC
Confidence 345689999999999998 2 33444332222211 4999999999
Q ss_pred CeeeeeeccccCCCCCeeeceEEEeecCCC-ceEEEEEEEcCCCCCceeEEEEcccccccCCce-eEEEEEccCCCCCCC
Q 004222 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWYDIIAPSGSPP 167 (767)
Q Consensus 90 ~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~-~~~w~~l~~~~~~~~ 167 (767)
+.+++|| .+..||.|+|+|.+++++.. ..+.|+|+| +..+||.+.||+.++..|+. ++.|++++...+++.
T Consensus 46 ~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~ 118 (758)
T PLN02352 46 NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN 118 (758)
T ss_pred CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC
Confidence 9999999 56679999999999999998 689999998 57899999999999998866 999999999988886
Q ss_pred CCCceEEEEEEEEecCCCCccccccCCCCCCCCccccccccccCCceeEeeeccccCCCCCceecCCCCccCccchHHHH
Q 004222 168 KPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDI 247 (767)
Q Consensus 168 ~~~g~i~l~l~y~p~~~~p~f~~gi~~~~ef~~v~~s~~p~~~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l 247 (767)
.. .+|+++++|.|...++.|..|+.+ ++|.||+.+.+|.+.|++|++|+|+|.++++.|.+.+ -|.+.++|++|
T Consensus 119 ~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al 192 (758)
T PLN02352 119 PE-LKLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDV 192 (758)
T ss_pred CC-CEEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHH
Confidence 44 799999999999999999999976 6999999999999999999999999999999999987 45558899999
Q ss_pred HHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCc
Q 004222 248 CHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHD 327 (767)
Q Consensus 248 ~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~ 327 (767)
+++|.+||++|+|++|+|+++++|+|++.++.+.+.+.+|.++|++||++||+||||+||+.+|... .+..|+|.+++
T Consensus 193 ~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~ 270 (758)
T PLN02352 193 YKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHD 270 (758)
T ss_pred HHHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccch
Confidence 9999999999999999999999999876432222234899999999999999999999999987653 45567788888
Q ss_pred HHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCC--CCCcceEEEEccccCCCcccCCCCCCC
Q 004222 328 EETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQAS--GNNRKITAFIGGIDLCDGRYDTPEHRL 405 (767)
Q Consensus 328 ~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~--~~~~~~~a~vGG~Ni~~~r~d~~~H~~ 405 (767)
+...+++++.+|.|.+.|+.+.. ....++||||++|||..++ +.+++.+|||||+|++.+||||+.|++
T Consensus 271 ~~~~~~f~h~~V~~~l~pr~~~~---------~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l 341 (758)
T PLN02352 271 EDAFAYFKHTKVVCKLCPRLHKK---------FPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSL 341 (758)
T ss_pred HHHHhhccCCceEEeeccccccc---------cccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCc
Confidence 88888999999999887765431 2456889999999999743 357778999999999999999999999
Q ss_pred ccCCCcc-ccCCCCCCCCCC---CCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhccccccccchhh
Q 004222 406 FRDLDTV-FKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLI 481 (767)
Q Consensus 406 ~~~~~~~-~~~d~~n~~~~~---~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~ 481 (767)
++.+.+. .++||+|+.|.. +...+++||||+|++|+||+|.|+..+|.++|+++++.. .++
T Consensus 342 ~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~---------------~l~ 406 (758)
T PLN02352 342 FRTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS---------------VLV 406 (758)
T ss_pred ccccccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc---------------ccC
Confidence 9988765 468998887752 456789999999999999999999999999999987642 111
Q ss_pred hccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccccCCccchhH
Q 004222 482 KIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKS 561 (767)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 561 (767)
......++.. .|.. .....+++.+|++||++.|++.++|.. ...+.+
T Consensus 407 p~~~~~~~~~------------~p~~-------~~~~~~~w~VQv~RSid~~sa~~~P~~--------------~~~erS 453 (758)
T PLN02352 407 PTSSIRNLVH------------QPGS-------SESNNRNWKVQVYRSIDHVSASHMPRN--------------LPVERS 453 (758)
T ss_pred Cccccccccc------------CCCC-------CcccCCcccceEEEecCccccccCCCC--------------CchhhH
Confidence 1111110000 0100 012357899999999988887777752 224799
Q ss_pred HHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCchhH
Q 004222 562 IQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQ 641 (767)
Q Consensus 562 i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~~~ 641 (767)
|+.+|+++|++|||+||||||||++.+..|+++...++.|+|+.+++++|+++++++++++|.||+|.+|+|.++..+++
T Consensus 454 Iq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq 533 (758)
T PLN02352 454 IHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQ 533 (758)
T ss_pred HHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHH
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCc-----ccccCCCCcccccccCCccceEEeeeEE
Q 004222 642 EILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPK-----DVLANNGDKVSDSQKNQRFMIYVHAKGM 716 (767)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~HsK~~ 716 (767)
.+++|++++|..+|..+.+.|+++|.+.+|.+||+|||+++++.... ...+.+++....++..++..+|+|||+|
T Consensus 534 ~il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlM 613 (758)
T PLN02352 534 DILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCLANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLM 613 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecccccccccCCccccccCCCCCchhhhcccccceeEEEeeeEE
Confidence 99999999999999999999999997668999999999999975421 1111111111112222334799999999
Q ss_pred EEeeeEeeeccCCcCCcCCCCCCCccceeeecCCccch
Q 004222 717 IVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTW 754 (767)
Q Consensus 717 IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~~ 754 (767)
||||++++|||||+|.|||.+++|+|++|.+++|+..+
T Consensus 614 IVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~ 651 (758)
T PLN02352 614 IVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGT 651 (758)
T ss_pred EEcCcEEEEcccccccccccCcccchhhhcccccccCC
Confidence 99999999999999999999999999999999998653
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-89 Score=775.66 Aligned_cols=679 Identities=44% Similarity=0.721 Sum_probs=562.7
Q ss_pred CCCceeEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEE
Q 004222 7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV 86 (767)
Q Consensus 7 ~~~~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v 86 (767)
+....+.++||.|+++|..+..++++.....+.+..+.....|.........--..+|.+. ++.++-++-.+.++|+++
T Consensus 66 ~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~e~Ylt~ 144 (887)
T KOG1329|consen 66 SGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRS-SLNSSMEKRKTLENYLTV 144 (887)
T ss_pred CcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccC-Ccccchhhhhhccchhee
Confidence 3455678999999999999999998887666555554444433333221000001122221 111111222448999999
Q ss_pred EECCeeeeeeccccCC-CCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCC
Q 004222 87 VVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (767)
Q Consensus 87 ~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~ 164 (767)
.+......+|...++. .+|.|.+.|.+.+.+....+.+++.+.+..+ ...+|.+.++...+..+..+..|++++...+
T Consensus 145 ~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 145 VLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDG 224 (887)
T ss_pred eechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCC
Confidence 9999888999999987 8999999999999998888999999999999 8999999999999998899999999988888
Q ss_pred CCCCCCceEEEEEEEEecCCCCccccccCCCCCCCCccccccccccCCceeEeeeccccCCCCCceecCCCC-ccCccch
Q 004222 165 SPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKPGTC 243 (767)
Q Consensus 165 ~~~~~~g~i~l~l~y~p~~~~p~f~~gi~~~~ef~~v~~s~~p~~~gn~v~~~~~~~~~~~~~~~~~~~~g~-~y~~~~~ 243 (767)
++......+.+.+.|.+......+..++.+.+++.+++.+..+...|..+++|.++|+.+++.|.+..++|+ -|....+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~ 304 (887)
T KOG1329|consen 225 KPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKY 304 (887)
T ss_pred ccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhH
Confidence 776666678899999999999999999999999999999999999999999999999999999999988888 6666889
Q ss_pred HHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCccc
Q 004222 244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM 323 (767)
Q Consensus 244 f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~ 323 (767)
|+.+.+||.+|++.|||+.|++.|.++|+|+...+ ..-+|.++|+++|++||+|+||+||+..+... +
T Consensus 305 ~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i 372 (887)
T KOG1329|consen 305 WEDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------I 372 (887)
T ss_pred HHHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc--------c
Confidence 99999999999999999999999999999987532 23799999999999999999999999987542 2
Q ss_pred ccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCCCCC
Q 004222 324 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH 403 (767)
Q Consensus 324 ~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H 403 (767)
.++..+....+++.+|+|..+|+.+.+.. .+.|.||+|++|||.+ ++||||+++|+|||||++|
T Consensus 373 ~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH 436 (887)
T KOG1329|consen 373 NSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEH 436 (887)
T ss_pred CchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCccc
Confidence 24556777888999999999988765321 2478899999999999 9999999999999999999
Q ss_pred CCccCCCccccCCCCCCCCC-----CCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhccccccccc
Q 004222 404 RLFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (767)
Q Consensus 404 ~~~~~~~~~~~~d~~n~~~~-----~~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~ 478 (767)
+|+|.++++.++||+||++. ++...||+||||+|+++.||+|+|+.++|.|+||++...+. ++ ++
T Consensus 437 ~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~---------~~-~~ 506 (887)
T KOG1329|consen 437 PLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK---------PY-DD 506 (887)
T ss_pred cccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC---------CC-Cc
Confidence 99999999999999999987 57788999999999999999999999999999999876420 00 11
Q ss_pred hhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccccCCccc
Q 004222 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (767)
Q Consensus 479 ~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 558 (767)
.+. ++.|.+.. ..|+ ...+.+++.+.+|+++|++.|.+.+ ++....+|+++.+....
T Consensus 507 ~~p-------~L~p~~~~------~~~~------~~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~ 563 (887)
T KOG1329|consen 507 SLP-------LLLPISDI------TGPS------EPNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEI 563 (887)
T ss_pred cce-------eecChhhh------cCCC------CccccccccccccceeeccCCcccc----hHHhhhhcccccCCCch
Confidence 111 11121100 0111 0123556778999999998886544 44556788899988888
Q ss_pred hhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCC--CC--C
Q 004222 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EG--D 634 (767)
Q Consensus 559 ~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~--~~--~ 634 (767)
|.||++||+++|++|||+||||||||++++..|.. ..|.+..+++++|++|.++++.++|+||+|.|| +| .
T Consensus 564 e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~ 638 (887)
T KOG1329|consen 564 EDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDT 638 (887)
T ss_pred HHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCC
Confidence 99999999999999999999999999998776643 467889999999999999999999999999999 88 6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEee
Q 004222 635 PKTNTVQEILFWQSQTMQMMYSVVAQELREMQVD-AHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHA 713 (767)
Q Consensus 635 ~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~-i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hs 713 (767)
+...+++++++|++++|+.+|.++++.|++.|++ .++.+|+.|+++++++.. +++..++.+|+||
T Consensus 639 p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~--------------~~~~~~emIYVHs 704 (887)
T KOG1329|consen 639 PGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQ--------------AQRLRREMIYVHS 704 (887)
T ss_pred CCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccc--------------cccceEEEEEEee
Confidence 6778999999999999999999999999999987 556667777777666420 1234567899999
Q ss_pred eEEEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCccchhcccCCCCCCcc
Q 004222 714 KGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQVC 766 (767)
Q Consensus 714 K~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~~~~~~~~~~~~~~ 766 (767)
|+|||||++++|||||+|.|||.+|+|+|++++++||+..|+....+|.++++
T Consensus 705 K~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~ 757 (887)
T KOG1329|consen 705 KLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIY 757 (887)
T ss_pred eeEEecCCEEEEeecccchhhccCCccceeEEEEecccchhhccCCcchhHHH
Confidence 99999999999999999999999999999999999999999999999998875
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=5.9e-66 Score=596.80 Aligned_cols=466 Identities=32% Similarity=0.509 Sum_probs=337.4
Q ss_pred ccccccc----cCCceeEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCC
Q 004222 203 NAYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRP 278 (767)
Q Consensus 203 ~s~~p~~----~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~ 278 (767)
.+++|++ .||.+++|.|| +++|.+|+++|++||++|+|++|+|+|.++|.|++.
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~-- 378 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH-- 378 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC--
Confidence 3566766 68999999998 889999999999999999999999999999998532
Q ss_pred CCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHHHhhh--cCCCceEEecccccCcccchhh
Q 004222 279 LPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFK 356 (767)
Q Consensus 279 ~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l--~~~gi~v~~~~~~~~~~~~~~~ 356 (767)
+.. +.+|.++|++||++||+||||+||.+++... .. +....+.| .++||+|..+|... .
T Consensus 379 D~~--g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~--~~--------S~~~k~~L~~lh~gI~V~r~P~~~----~--- 439 (1068)
T PLN02866 379 DHE--SSRLDSLLEAKAKQGVQIYILLYKEVALALK--IN--------SVYSKRRLLGIHENVKVLRYPDHF----S--- 439 (1068)
T ss_pred Cch--HHHHHHHHHHHHHCCCEEEEEEECccccccc--cC--------chhhHHHHHHhCCCeEEEecCccc----c---
Confidence 122 3899999999999999999999999864221 00 01112222 36799986543321 0
Q ss_pred hccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccc-cCCCCCCCCC------------
Q 004222 357 QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVF-KDDFHNPTYP------------ 423 (767)
Q Consensus 357 ~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~-~~d~~n~~~~------------ 423 (767)
....++|||||++|||++ +||+||+||+.+||||++|.+.|....++ ++||.|++..
T Consensus 440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ 509 (1068)
T PLN02866 440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE 509 (1068)
T ss_pred --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence 124688999999999999 99999999999999999999988655555 6799988653
Q ss_pred -CCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhccc---------ccccc----------------
Q 004222 424 -IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRV---------SHWRD---------------- 477 (767)
Q Consensus 424 -~~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~---------~~~~~---------------- 477 (767)
++...+++||||++++|+||+|.+|+++|.++||++++.+.-......+ +.+..
T Consensus 510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~ 589 (1068)
T PLN02866 510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQ 589 (1068)
T ss_pred cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCcccccccccccccccccccccccccccccccccccccc
Confidence 2345567899999999999999999999999999988753100000000 00000
Q ss_pred ------chhh---hccccccccCCccccc------------CCCcccc--------------C---CC---Cc-c-----
Q 004222 478 ------DYLI---KIGRISWILSPELSLK------------TNGTTIV--------------P---RD---DN-V----- 510 (767)
Q Consensus 478 ------~~l~---~~~~~~~~~~p~~~~~------------~~~~~~~--------------p---~~---~~-~----- 510 (767)
++.. ....+. ++.|....+ ...+... + .. +. .
T Consensus 590 ~~~~~~~~~~~~~~~~~~P-~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 668 (1068)
T PLN02866 590 KGIARQDSFSSRSSLQDIP-LLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLS 668 (1068)
T ss_pred ccccccccccccccccccc-cCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 000000 111110000 0000000 0 00 00 0
Q ss_pred --------------------------c----ccccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccccCCccchh
Q 004222 511 --------------------------V----RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDK 560 (767)
Q Consensus 511 --------------------------~----~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 560 (767)
. ........+++.+|++||...|+... + ..|.
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~-~-----------------~~E~ 730 (1068)
T PLN02866 669 VKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGT-S-----------------QVEE 730 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCC-C-----------------chHH
Confidence 0 00001223567899999876554321 1 2479
Q ss_pred HHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCC--CCC---
Q 004222 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDP--- 635 (767)
Q Consensus 561 ~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~--~~~--- 635 (767)
||++||+++|++|+|+||||||||+++... ...+.|.|+.+++.+|++|+++++.++|.||+|.+|+ |..
T Consensus 731 SI~~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~ 805 (1068)
T PLN02866 731 SIHAAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDG 805 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCc
Confidence 999999999999999999999999986421 2356899999999999999999999999999999996 332
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeE
Q 004222 636 KTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (767)
Q Consensus 636 d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~ 715 (767)
....++.+++|++++++.++.++.+.|++++. ..+.+||+||++++++.. .++++. ..+.+|+|||+
T Consensus 806 ~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g-~~p~dYisf~~LRn~~~l------~~~~~~------vteqIYVHsK~ 872 (1068)
T PLN02866 806 GAASVRAIMHWQYRTICRGKNSILHNLYDLLG-PKTHDYISFYGLRAYGRL------FEGGPL------ATSQIYVHSKI 872 (1068)
T ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHHHhC-CCHHHeEeeecccccccc------cCCCcc------cceeeEEEeeE
Confidence 23478999999999999999999999988532 368899999999998643 112221 22468999999
Q ss_pred EEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCccchhc
Q 004222 716 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWAR 756 (767)
Q Consensus 716 ~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~~~~ 756 (767)
|||||++++|||||+|.|||.+++|+|++|++.|++.....
T Consensus 873 ~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~ 913 (1068)
T PLN02866 873 MIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSS 913 (1068)
T ss_pred EEEcCcEEEEccccccccccccCcCcceeeeeecccccccc
Confidence 99999999999999999999999999999999999876543
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=3.1e-51 Score=466.13 Aligned_cols=336 Identities=24% Similarity=0.332 Sum_probs=253.3
Q ss_pred ccccccccCCceeEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCC
Q 004222 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (767)
Q Consensus 203 ~s~~p~~~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g 282 (767)
.+..|...||.+++|.|| +++|++++++|++||++|+|++|+|.+| ..|
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~d-----------~~g 179 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKSD-----------EIG 179 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeCC-----------cHH
Confidence 466889999999999998 8899999999999999999999999886 233
Q ss_pred CCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccc
Q 004222 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGT 362 (767)
Q Consensus 283 ~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~ 362 (767)
.++.++|++||+|||+||||+ |++||... .+.+.+.|+++||++..+.+... .++ ..+.
T Consensus 180 --~~i~~aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~---~~~---~~~~ 238 (509)
T PRK12452 180 --TKVRDALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFS---AWL---LETV 238 (509)
T ss_pred --HHHHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCccc---ccc---cccc
Confidence 899999999999999999995 99998532 24677889999999986532211 111 2357
Q ss_pred eeeccceEEEeccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeC
Q 004222 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG 442 (767)
Q Consensus 363 ~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~G 442 (767)
|+|||||++||||+ +||+||+|+++ +|.+.. .+..+|||++++++|
T Consensus 239 n~RnHRKi~VIDg~--------ia~~GG~Ni~d-~y~~~~-------------------------~~~~~WrD~~~~i~G 284 (509)
T PRK12452 239 NYRNHRKIVIVDGE--------IGFTGGLNVGD-EYLGRS-------------------------KKFPVWRDSHLKVEG 284 (509)
T ss_pred cCCCCCeEEEEcCC--------EEEeCCcccch-hhcCCC-------------------------CCCCCceEEEEEEEC
Confidence 89999999999999 99999999999 453311 124689999999999
Q ss_pred hHHHHHHHHHHHHHhhhccchhhhhhhccccccccchhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCce
Q 004222 443 PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENW 522 (767)
Q Consensus 443 pav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 522 (767)
|+|.+++..|.++|+.+++... ...|.. . ..+ .+.|.. ....+..
T Consensus 285 p~V~~l~~~F~~dW~~~~~~~~-------~~~~~~--------~---~~~---------~~~~~~--------~~~~~~~ 329 (509)
T PRK12452 285 KALYKLQAIFLEDWLYASSGLN-------TYSWDP--------F---MNR---------QYFPGK--------EISNAEG 329 (509)
T ss_pred HHHHHHHHHHHHHHHHhhCccc-------cccccc--------c---cch---------hcCCCc--------cccCCCe
Confidence 9999999999999998764310 000000 0 000 011110 0012345
Q ss_pred eeEEEeeccCCCCCCCCCCccccccccccccCCccchhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCc
Q 004222 523 HVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNL 602 (767)
Q Consensus 523 ~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~ 602 (767)
.+|++.+ | |... +.++.++|+++|.+||++|||++|||++ +.
T Consensus 330 ~~q~~~s---g-----p~~~----------------~~~i~~~~l~~I~~A~~~I~I~tpYf~p------d~-------- 371 (509)
T PRK12452 330 AVQIVAS---G-----PSSD----------------DKSIRNTLLAVMGSAKKSIWIATPYFIP------DQ-------- 371 (509)
T ss_pred EEEEEeC---C-----CCch----------------hHHHHHHHHHHHHHhhhEEEEECCccCC------CH--------
Confidence 6888875 3 3221 4689999999999999999999999994 33
Q ss_pred cHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCC
Q 004222 603 IPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGK 682 (767)
Q Consensus 603 i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~ 682 (767)
.+..+|..|++ |||+|+||+|. .+|. .+..++++.+ ++.|+++|++| |.+
T Consensus 372 ---~l~~aL~~Aa~--rGV~Vrii~p~----~~D~----~~~~~a~~~~-------~~~L~~aGv~I--------~~y-- 421 (509)
T PRK12452 372 ---ETLTLLRLSAI--SGIDVRILYPG----KSDS----IISDQASQSY-------FTPLLKAGASI--------YSY-- 421 (509)
T ss_pred ---HHHHHHHHHHH--cCCEEEEEcCC----CCCh----HHHHHHHHHH-------HHHHHHcCCEE--------EEe--
Confidence 34455555554 56999999996 3343 2344555543 68899999976 322
Q ss_pred ccCCCcccccCCCCcccccccCCccceEEeeeEEEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 683 REEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
.++++|+|++||||++++|||+|||.||+.. |.|++++++|++++
T Consensus 422 ------------------------~~~~lHaK~~ivD~~~a~vGS~Nld~RS~~~--n~E~~~~i~~~~~~ 466 (509)
T PRK12452 422 ------------------------KDGFMHAKIVLVDDKIATIGTANMDVRSFEL--NYEIISVLYESETV 466 (509)
T ss_pred ------------------------cCCCeeeeEEEECCCEEEEeCcccCHhHhhh--hhhccEEEECHHHH
Confidence 1469999999999999999999999999985 59999999999885
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=3.4e-50 Score=457.18 Aligned_cols=332 Identities=24% Similarity=0.358 Sum_probs=251.6
Q ss_pred ccccccccCCceeEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCC
Q 004222 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (767)
Q Consensus 203 ~s~~p~~~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g 282 (767)
.+..|++.||.+++|.+| +++|++|+++|++||++|+|++|+|.+| ..|
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~d-----------~~g 155 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRPD-----------GLG 155 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEccC-----------CcH
Confidence 466788999999999998 8899999999999999999999999876 233
Q ss_pred CCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHHHhhhcCCCceEEec-ccccCcccchhhhcccc
Q 004222 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA-PRYASSKLSYFKQQIVG 361 (767)
Q Consensus 283 ~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~-~~~~~~~~~~~~~~~~~ 361 (767)
.++.++|++||+|||+||||+ |++||... ..+...+.|+++||++..+ |.... .++ ..+
T Consensus 156 --~~i~~aL~~aa~rGV~VriL~-D~~Gs~~~-----------~~~~~~~~L~~~Gi~v~~~~p~~~~---~~~---~~~ 215 (483)
T PRK01642 156 --DQVAEALIAAAKRGVRVRLLY-DSIGSFAF-----------FRSPYPEELRNAGVEVVEFLKVNLG---RVF---RRR 215 (483)
T ss_pred --HHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----------CcHHHHHHHHHCCCEEEEecCCCcc---ccc---ccc
Confidence 899999999999999999995 99998642 1233677899999999865 32111 111 235
Q ss_pred ceeeccceEEEeccCCCCCCcceEEEEccccCCC-cccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEE
Q 004222 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD-GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL 440 (767)
Q Consensus 362 ~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~-~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri 440 (767)
.|+|||||++||||+ +||+||+|+++ .++.. ....++|+|+++++
T Consensus 216 ~n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~--------------------------~~~~~~w~D~~~~i 261 (483)
T PRK01642 216 LDLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ--------------------------DPGVGQWRDTHVRI 261 (483)
T ss_pred cccccCceEEEEcCC--------EEEeCCcccCCHHHhCC--------------------------CCCCCCcEEEEEEE
Confidence 789999999999999 99999999999 44421 11236899999999
Q ss_pred eChHHHHHHHHHHHHHhhhccchhhhhhhccccccccchhhhccccccccCCcccccCCCccccCCCCcccccccCCCCC
Q 004222 441 DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPE 520 (767)
Q Consensus 441 ~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 520 (767)
+||+|.+++..|.++|+.+++... .. . .|.. ..++ ....+
T Consensus 262 ~Gp~v~~l~~~F~~dW~~~~~~~~---------------~~---~-----~~~~--------~~~~---------~~~~~ 301 (483)
T PRK01642 262 EGPVVTALQLIFAEDWEWETGERI---------------LP---P-----PPDV--------LIMP---------FEEAS 301 (483)
T ss_pred EcHHHHHHHHHHHHHHHHHhCccc---------------CC---C-----Cccc--------ccCC---------ccCCC
Confidence 999999999999999998764310 00 0 0000 0000 01112
Q ss_pred ceeeEEEeeccCCCCCCCCCCccccccccccccCCccchhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCC
Q 004222 521 NWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGAD 600 (767)
Q Consensus 521 ~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~ 600 (767)
...+|++.+ | |..+ +..+.++++++|.+||++|||++|||++ +.
T Consensus 302 ~~~~qi~~s---g-----P~~~----------------~~~~~~~~~~~I~~A~~~I~I~tpYfip------~~------ 345 (483)
T PRK01642 302 GHTVQVIAS---G-----PGDP----------------EETIHQFLLTAIYSARERLWITTPYFVP------DE------ 345 (483)
T ss_pred CceEEEEeC---C-----CCCh----------------hhHHHHHHHHHHHHhccEEEEEcCCcCC------CH------
Confidence 346888865 3 3321 4678999999999999999999999994 33
Q ss_pred CccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeec
Q 004222 601 NLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCL 680 (767)
Q Consensus 601 ~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~ 680 (767)
.+..+|..|++ |||+|+||+|.. +|. .++.++++++ ++.|.++|++| |.+
T Consensus 346 -----~i~~aL~~Aa~--rGV~Vril~p~~----~d~----~~~~~~~~~~-------~~~L~~~Gv~I--------~~y 395 (483)
T PRK01642 346 -----DLLAALKTAAL--RGVDVRIIIPSK----NDS----LLVFWASRAF-------FTELLEAGVKI--------YRY 395 (483)
T ss_pred -----HHHHHHHHHHH--cCCEEEEEeCCC----CCc----HHHHHHHHHH-------HHHHHHcCCEE--------EEe
Confidence 34455555655 559999999963 332 2445555554 67888999875 322
Q ss_pred CCccCCCcccccCCCCcccccccCCccceEEeeeEEEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 681 GKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
.++++|+|+|||||++++|||+|||.|||.. |.|++++++|++++
T Consensus 396 --------------------------~~~~~HaK~~ivD~~~~~vGS~N~d~rS~~~--N~E~~~~i~d~~~~ 440 (483)
T PRK01642 396 --------------------------EGGLLHTKSVLVDDELALVGTVNLDMRSFWL--NFEITLVIDDTGFA 440 (483)
T ss_pred --------------------------CCCceEeEEEEECCCEEEeeCCcCCHhHHhh--hhcceEEEECHHHH
Confidence 1458999999999999999999999999985 59999999999886
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=7.6e-49 Score=434.40 Aligned_cols=326 Identities=20% Similarity=0.295 Sum_probs=242.9
Q ss_pred ccccCCceeEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCc
Q 004222 207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT 286 (767)
Q Consensus 207 p~~~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~ 286 (767)
+++.||++++|.|| +++|++++++|++||++|+|++|+|.+| ..| ..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~d-----------~~g--~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFED-----------KVG--KQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEecC-----------chH--HH
Confidence 67889999999998 8999999999999999999999999876 223 79
Q ss_pred HHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeec
Q 004222 287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTH 366 (767)
Q Consensus 287 l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~ 366 (767)
|.++|++||+|||+||||+ |+.||... +..+.+.|.++||+++.+.+.+. ++.. ....+.|+
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~----~~~~-~~~~~~R~ 111 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR----LLGM-RTNLFRRM 111 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc----cccc-ccccccCC
Confidence 9999999999999999996 99987542 24677889999999986532211 1100 11223599
Q ss_pred cceEEEeccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHH
Q 004222 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY 446 (767)
Q Consensus 367 H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpav~ 446 (767)
|+|++|||++ +|||||+|++++++.. .+...|+|++++|+||+|.
T Consensus 112 HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V~ 156 (411)
T PRK11263 112 HRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVVA 156 (411)
T ss_pred cceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHHH
Confidence 9999999999 9999999999844321 1124699999999999999
Q ss_pred HHHHHHHHHHhhhccchhhhhhhccccccccchhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEE
Q 004222 447 DVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQI 526 (767)
Q Consensus 447 dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv 526 (767)
+++..|.+.|....... ..|... + ..+. ....+...+|+
T Consensus 157 ~l~~~f~~~w~~~~~~~---------~~~~~~-------------~----------~~~~---------~~~~g~~~~~~ 195 (411)
T PRK11263 157 DIHQFELEALPGQSAAR---------RWWRRH-------------H----------RAEE---------NRQPGEAQALL 195 (411)
T ss_pred HHHHHHHHHHhhcccch---------hhhccc-------------c----------cCcc---------cCCCCCeEEEE
Confidence 99999999996432110 000000 0 0000 01124446777
Q ss_pred EeeccCCCCCCCCCCccccccccccccCCccchhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHH
Q 004222 527 FRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME 606 (767)
Q Consensus 527 ~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~ 606 (767)
+.+ + |.. ....+...|+.+|.+||++|+|+||||+|. . .
T Consensus 196 v~~---~-----p~~----------------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~------~-----------~ 234 (411)
T PRK11263 196 VWR---D-----NEE----------------HRDDIERHYLKALRQARREVIIANAYFFPG------Y-----------R 234 (411)
T ss_pred EEC---C-----Ccc----------------hHHHHHHHHHHHHHHhceEEEEEecCcCCC------H-----------H
Confidence 753 2 211 136789999999999999999999999952 2 3
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCC
Q 004222 607 LALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA 686 (767)
Q Consensus 607 ~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~ 686 (767)
+..+|..|++ |||+|+||+|. .+|. .++.++++.+ +..|+++|++| |++
T Consensus 235 l~~aL~~Aa~--RGV~V~ii~~~----~~d~----~~~~~a~~~~-------~~~Ll~~Gv~I--------~~y------ 283 (411)
T PRK11263 235 LLRALRNAAR--RGVRVRLILQG----EPDM----PIVRVGARLL-------YNYLLKGGVQI--------YEY------ 283 (411)
T ss_pred HHHHHHHHHH--CCCEEEEEeCC----CCCc----HHHHHHHHHH-------HHHHHHCCCEE--------EEe------
Confidence 4455556655 55999999995 3343 2444555543 77889999976 332
Q ss_pred CcccccCCCCcccccccCCccceEEeeeEEEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 687 PKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
. ..++|+|+|||||++++|||+|||.|||.+ |.|++++|+|++++
T Consensus 284 ------------------~--~~~lHaK~~viD~~~~~vGS~Nld~rS~~l--N~E~~~~i~d~~~a 328 (411)
T PRK11263 284 ------------------C--RRPLHGKVALMDDHWATVGSSNLDPLSLSL--NLEANLIIRDRAFN 328 (411)
T ss_pred ------------------c--CCCceeEEEEECCCEEEEeCCcCCHHHhhh--hhhcCEEEeCHHHH
Confidence 1 358999999999999999999999999985 59999999999996
No 9
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=1e-38 Score=355.05 Aligned_cols=326 Identities=15% Similarity=0.209 Sum_probs=215.6
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
...|+.+.++|.+||++|+|++|+|.|+.... ...| .+|.++|++||+|||+||||+ |..+..
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~~------~~~G--~~i~~aL~~aA~rGV~VRIL~-d~~~~~-------- 87 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSLSDEVG------TNFG--TMILNEIIQLPKRGVRVRIAV-NKSNKP-------- 87 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEecCcccc------chhH--HHHHHHHHHHHHCCCEEEEEE-CCCCCc--------
Confidence 45799999999999999999999998531100 0112 789999999999999999996 865321
Q ss_pred cccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCC
Q 004222 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (767)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (767)
....+.|+++||+++.++... ..+.++|+|++|||++ ++|+||+||++ |+.+
T Consensus 88 -------~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~ 139 (424)
T PHA02820 88 -------LKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT 139 (424)
T ss_pred -------hhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence 134567888999998653211 1245799999999999 99999999988 5532
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEE--eChHHHHHHHHHHHHHhhhccchhhhhhhccccccccc
Q 004222 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (767)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri--~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~ 478 (767)
..+|+++++ +||+|.+|++.|..+|+.++...+ ..|...
T Consensus 140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~--------~~~~~~ 180 (424)
T PHA02820 140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLP--------YNWKNF 180 (424)
T ss_pred -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCC--------Cccccc
Confidence 224777777 799999999999999998653210 011100
Q ss_pred hhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccccCCccc
Q 004222 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (767)
Q Consensus 479 ~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 558 (767)
+ |. .++...+.. ....+....+++.+ + |..- .+. .
T Consensus 181 -------~-----~~---------~~~~~~p~~----~~~~~~~~~~~~ss---s-----P~~~---------~~~---~ 215 (424)
T PHA02820 181 -------Y-----PL---------YYNTDHPLS----LNVSGVPHSVFIAS---A-----PQQL---------CTM---E 215 (424)
T ss_pred -------c-----cc---------ccccCCCcc----cccCCccceEEEeC---C-----Chhh---------cCC---C
Confidence 0 00 001000000 00011112344433 2 2110 000 0
Q ss_pred hhHHHHHHHHHHHhccceEEEecccccccc-------CCCcccccCCCCCccHHHHHHHHHH-HHHhCCCeEEEEEecCC
Q 004222 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSS-------YAWPSYKNAGADNLIPMELALKIAS-KIRANERFAVYVIIPMW 630 (767)
Q Consensus 559 ~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~-------~~~p~~~~~~~~~~i~~~~~~~l~~-~~~~grgV~V~Illp~~ 630 (767)
......+|+.+|.+||++|||++|||+|.. .+|| .+..+|.+ |+ .|||+||||+|.|
T Consensus 216 r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~-------------~i~~AL~~AA~--~RGV~VriLvp~~ 280 (424)
T PHA02820 216 RTNDLTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWP-------------YIEDELRRAAI--DRKVSVKLLISCW 280 (424)
T ss_pred CCchHHHHHHHHHHHhhEEEEEEccccceeeccCCcccchH-------------HHHHHHHHHHH--hCCCEEEEEEecc
Confidence 134578999999999999999999999762 1343 23344442 32 3669999999976
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceE
Q 004222 631 PEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIY 710 (767)
Q Consensus 631 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (767)
++ ++.+ .++.+.. ++.|.++|++| ++++|.+..... .-...++
T Consensus 281 ~d----~~~~----~~a~~~~-------l~~L~~~gv~I----~Vk~y~~p~~~~------------------~~~~~~f 323 (424)
T PHA02820 281 QR----SSFI----MRNFLRS-------IAMLKSKNINI----EVKLFIVPDADP------------------PIPYSRV 323 (424)
T ss_pred CC----CCcc----HHHHHHH-------HHHHhccCceE----EEEEEEcCcccc------------------cCCccee
Confidence 43 3222 2333322 56778899987 677776521110 0012469
Q ss_pred EeeeEEEEeeeEeeeccCCcCCcCCCCCCCccceeeecCC
Q 004222 711 VHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (767)
Q Consensus 711 ~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p 750 (767)
+|+|+||||+ +++|||+|||.|||..| .|++++++++
T Consensus 324 ~HaK~~vvD~-~a~IGTsN~D~rsf~~n--~ev~~~i~~~ 360 (424)
T PHA02820 324 NHAKYMVTDK-TAYIGTSNWTGNYFTDT--CGVSINITPD 360 (424)
T ss_pred eeeeEEEEcc-cEEEECCcCCHHHHhcc--CcEEEEEecC
Confidence 9999999997 79999999999999955 9999999987
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=1.1e-38 Score=355.47 Aligned_cols=366 Identities=16% Similarity=0.138 Sum_probs=232.2
Q ss_pred cccCCceeEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcH
Q 004222 208 LRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTL 287 (767)
Q Consensus 208 ~~~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l 287 (767)
...+|.+++|.+| +++|++|+++|++|+++|+|++|+|..| +.| .+|
T Consensus 21 ~~~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D-----------~~g--~~i 67 (451)
T PRK09428 21 PQSPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLEDD-----------EAG--REI 67 (451)
T ss_pred ccCcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecCC-----------chH--HHH
Confidence 3467899999997 8899999999999999999999999886 334 899
Q ss_pred HHHHHHHHh--cCCEEEEEEeCCC-------CccCccccccCcccccCcHHHHhhhcCC--CceEEecccccCcccchhh
Q 004222 288 GELLKYKSE--EGVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKHS--SVNCVLAPRYASSKLSYFK 356 (767)
Q Consensus 288 ~~~L~~aa~--rGV~VriLv~D~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~~--gi~v~~~~~~~~~~~~~~~ 356 (767)
+++|.+|++ +||+|+||+ |.. |+... .....+...|.++ |+++.++.. |..
T Consensus 68 l~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~~----------~~~~~~~~~l~~~~~gv~v~~f~~-p~~------ 129 (451)
T PRK09428 68 LDALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAAS----------NTNADWYCEMAQEYPGVDIPVYGV-PVN------ 129 (451)
T ss_pred HHHHHHHHhcCCCcEEEEEE-EcccccccccccCCC----------CcCHHHHHHHHHhCCCceEEEcCC-ccc------
Confidence 999999865 799999997 984 43210 0124556667654 689876521 111
Q ss_pred hccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceee
Q 004222 357 QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDL 436 (767)
Q Consensus 357 ~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~ 436 (767)
....+.|+|+|++|||++ ++|+| +|+++.|+ +. + . ....|.
T Consensus 130 --~~e~~gr~HrKi~IiD~~--------v~ysG-aNi~d~Yl-~~-~------------------------~--~~r~Dr 170 (451)
T PRK09428 130 --TREALGVLHLKGFIIDDT--------VLYSG-ASLNNVYL-HQ-H------------------------D--KYRYDR 170 (451)
T ss_pred --cchhhhhceeeEEEECCC--------EEEec-ccccHHHh-cC-C------------------------c--ccCcce
Confidence 123567899999999999 99997 89999443 21 0 0 112377
Q ss_pred eeEEeChHHHHHHHHHHHHHhhhccchhhhhhhcccc-ccccc--hhh-hccccccccCCcccccCCCccccCCCCcccc
Q 004222 437 HCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVS-HWRDD--YLI-KIGRISWILSPELSLKTNGTTIVPRDDNVVR 512 (767)
Q Consensus 437 ~vri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~-~~~~~--~l~-~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~ 512 (767)
.++|+||++.++...|.++|..++... .+.. .|... .+. ....+...+.. ..+.++
T Consensus 171 y~~i~g~~la~~~~~fi~~~~~~~~~v------~~l~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~------ 230 (451)
T PRK09428 171 YHLIRNAELADSMVNFIQQNLLNSPAV------NRLDQPNRPKTKEIKNDIRQFRQRLRD--------AAYQFQ------ 230 (451)
T ss_pred EEEEeCchHHHHHHHHHHHHhhccCcc------ccccccccccchhhHHHHHHHHHHHhh--------hccCcc------
Confidence 888999999999999999997754320 0000 00000 000 00000000000 000000
Q ss_pred cccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccccCCccchhHHHHHHHHHHHhccceEEEeccccccccCCCc
Q 004222 513 VSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWP 592 (767)
Q Consensus 513 ~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p 592 (767)
...+...+++......| | ...+...+..+|.+|+++|+|+||||++.
T Consensus 231 ----~~~~~~~~~v~p~~g~g-----~-------------------~~~l~~~~~~li~~A~~~i~I~TPYF~p~----- 277 (451)
T PRK09428 231 ----GQANNDELSVTPLVGLG-----K-------------------KNLLNKTIFHLMASAEQKLTICTPYFNLP----- 277 (451)
T ss_pred ----cccCCCCeEEeeeeccC-----C-------------------chHHHHHHHHHHhccCcEEEEEeCCcCCC-----
Confidence 00011122333221111 1 14677889999999999999999999953
Q ss_pred ccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHH-------HHHHHHc
Q 004222 593 SYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVV-------AQELREM 665 (767)
Q Consensus 593 ~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~L~~~ 665 (767)
. .+..+|..+++ +||+|+||+|....++.-.+..+.++.++...+ .|... .+.|.+.
T Consensus 278 -~-----------~l~~~L~~a~~--rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~ 341 (451)
T PRK09428 278 -A-----------ILVRNIIRLLR--RGKKVEIIVGDKTANDFYIPPDEPFKIIGALPY--LYEINLRRFAKRLQYYIDN 341 (451)
T ss_pred -H-----------HHHHHHHHHHh--cCCcEEEEcCCcccccCcCCCccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhc
Confidence 2 34455666655 559999999974332221122334444544332 11111 1234455
Q ss_pred ccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEEeeeEeeeccCCcCCcCCCCCCCcccee
Q 004222 666 QVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAM 745 (767)
Q Consensus 666 Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v 745 (767)
| .+ .++.|.+ .+.++|+|.|+||+++++|||+|||.||+. .|.|+++
T Consensus 342 G-~l----~v~i~~~--------------------------~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l 388 (451)
T PRK09428 342 G-QL----NVRLWKD--------------------------GDNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENAL 388 (451)
T ss_pred C-cc----eEEEEec--------------------------CCCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceE
Confidence 5 00 1123432 245899999999999999999999999998 5699999
Q ss_pred eecCCccchhcccCCCCCCc
Q 004222 746 GSYQPHHTWARKLKHPHGQV 765 (767)
Q Consensus 746 ~i~~p~~~~~~~~~~~~~~~ 765 (767)
+|+||+-.+.+++..+..+|
T Consensus 389 ~i~d~~~~l~~~~~~E~~~i 408 (451)
T PRK09428 389 LIHDPKQELAEQREKELELI 408 (451)
T ss_pred EEECChHHHHHHHHHHHHHH
Confidence 99999887777666555443
No 11
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=1.4e-36 Score=344.52 Aligned_cols=338 Identities=25% Similarity=0.359 Sum_probs=238.2
Q ss_pred ccCCceeEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHH
Q 004222 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (767)
Q Consensus 209 ~~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~ 288 (767)
..++.++++.++ .+.|.+++++|++|+++|++++|++.++ ..| ..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~d-----------~~~--~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQDD-----------ELG--REIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeCC-----------hhH--HHHH
Confidence 678899999987 8899999999999999999999998876 223 7999
Q ss_pred HHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHHHhhhcCCCc-eEEecccccCcccchhhhccccceeecc
Q 004222 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVLAPRYASSKLSYFKQQIVGTIFTHH 367 (767)
Q Consensus 289 ~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~~~~~~~r~H 367 (767)
++|.++|++||+||+++ |..|+... ........++++|+ .+..+.+...... .....+.|+|
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~r~H 166 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPRPL-----RFRRLNRRLH 166 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCcccccc-----hhhhhhcccc
Confidence 99999999999999997 99987331 12356778889999 5654322211100 1234678999
Q ss_pred ceEEEeccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHH
Q 004222 368 QKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYD 447 (767)
Q Consensus 368 ~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpav~d 447 (767)
+|++|||+. ++|+||+|+++.++... ....+|+|+++++.||+|.+
T Consensus 167 ~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~~ 212 (438)
T COG1502 167 RKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVAD 212 (438)
T ss_pred ceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHHH
Confidence 999999998 99999999999665321 02358999999999999999
Q ss_pred HHHHHHHHHhhhccchhhhhhhccccccccchhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEE
Q 004222 448 VLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIF 527 (767)
Q Consensus 448 l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~ 527 (767)
+...|.++|+....... . +. .. ..+. .+.. .. ........+|++
T Consensus 213 l~~~f~~~w~~~~~~~~------~--------~~---~~---~~~~----------~~~~--~~----~~~~~~~~~~~~ 256 (438)
T COG1502 213 LARLFIQDWNLESGSSK------P--------LL---AL---VRPP----------LQSL--SL----LPVGRGSTVQVL 256 (438)
T ss_pred HHHHHHHHhhhccCcCc------c--------cc---cc---cccc----------cccc--cc----cccccCcceEEE
Confidence 99999999998643210 0 00 00 0000 0000 00 000111225777
Q ss_pred eeccCCCCCCCCCCccccccccccccCCccchhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHH
Q 004222 528 RSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMEL 607 (767)
Q Consensus 528 rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~ 607 (767)
.+ + |..... . ....+...++.+|.+|+++|+|++|||++. . .+
T Consensus 257 ~~---~-----P~~~~~---------~---~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~------~-----------~~ 299 (438)
T COG1502 257 SS---G-----PDKGLG---------S---ELIELNRLLLKAINSARESILIATPYFVPD------R-----------EL 299 (438)
T ss_pred ec---C-----Cccccc---------h---hhhhHHHHHHHHHHhhceEEEEEcCCcCCC------H-----------HH
Confidence 65 2 221100 0 011245889999999999999999999953 2 34
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCC
Q 004222 608 ALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP 687 (767)
Q Consensus 608 ~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~ 687 (767)
..++..+.+ +||+|+|++|.. +.++. .+++++.+. .+..|.+.|+++ |++
T Consensus 300 ~~al~~a~~--~Gv~V~ii~~~~--~~~d~----~~~~~~~~~-------~~~~l~~~gv~i--------~~~------- 349 (438)
T COG1502 300 LAALKAAAR--RGVDVRIIIPSL--GANDS----AIVHAAYRA-------YLKELLEAGVKV--------YEY------- 349 (438)
T ss_pred HHHHHHHHh--cCCEEEEEeCCC--CCCCh----HHHHHHHHH-------HHHHHHHhCCEE--------EEe-------
Confidence 455566644 559999999953 12232 233344443 377888989875 433
Q ss_pred cccccCCCCcccccccCCccc-eEEeeeEEEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCccch
Q 004222 688 KDVLANNGDKVSDSQKNQRFM-IYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTW 754 (767)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~-~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~~ 754 (767)
. . .++|+|+|||||++++|||+|||.||+.+ |+|++++|+|++++.
T Consensus 350 -----------------~--~g~~lH~K~~iiD~~~~~vGS~N~~~rS~~l--N~E~~~~i~d~~~~~ 396 (438)
T COG1502 350 -----------------P--GGAFLHSKVMIIDDRTVLVGSANLDPRSLRL--NFEVGLVIEDPELAL 396 (438)
T ss_pred -----------------c--CCCcceeeEEEEcCCEEEEeCCcCCHhHHHH--hhhheeEEeCHHHHH
Confidence 1 2 39999999999999999999999999985 599999999998763
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=5.4e-36 Score=329.46 Aligned_cols=317 Identities=16% Similarity=0.191 Sum_probs=206.6
Q ss_pred cchHHHHHHHHHhccceEEEEEee--cccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccc
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWS--VFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVK 318 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~--~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~ 318 (767)
..+|++|+++|++||++|+|++|+ |..| ..| .+|.++|++||+|||+||||+ |+.|+.
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~~~d-----------~~g--~~i~~aL~~aa~rGV~Vril~-D~~~~~------ 89 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCNLRST-----------PEG--RLILDKLKEAAESGVKVTILV-DEQSGD------ 89 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEecccCC-----------chH--HHHHHHHHHhccCCCeEEEEe-cCCCCC------
Confidence 468999999999999999999998 5554 334 899999999999999999996 987532
Q ss_pred cCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCccc
Q 004222 319 TPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY 398 (767)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~ 398 (767)
...+.|+++||++...+.... +..+.+|+|++||||+ +||+||+||++ +|
T Consensus 90 ----------~~~~~L~~~Gv~v~~~~~~~~-----------~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~ 139 (369)
T PHA03003 90 ----------KDEEELQSSNINYIKVDIGKL-----------NNVGVLLGSFWVSDDR--------RCYIGNASLTG-GS 139 (369)
T ss_pred ----------ccHHHHHHcCCEEEEEecccc-----------CCCCceeeeEEEEcCc--------EEEEecCccCC-cc
Confidence 346788999999875432110 0011368899999999 99999999999 55
Q ss_pred CCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhccccccccc
Q 004222 399 DTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (767)
Q Consensus 399 d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~ 478 (767)
.+..| ..+.|+|. ||+|.+|++.|..+|..++++.. +
T Consensus 140 ~~~~~-------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~----------~--- 176 (369)
T PHA03003 140 ISTIK-------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSV----------F--- 176 (369)
T ss_pred cCccc-------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCCCc----------c---
Confidence 33211 22578883 99999999999999987654310 0
Q ss_pred hhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccccCCccc
Q 004222 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (767)
Q Consensus 479 ~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 558 (767)
.... . + ...|... . .......+ .+++.+ + |..... . .
T Consensus 177 --~~~~-~-----~---------~~~~~~~--~-~~~~~~~~---~~~~~s---~-----P~~~~~---------~---~ 213 (369)
T PHA03003 177 --NRLC-C-----A---------CCLPVST--K-YHINNPIG---GVFFSD---S-----PEHLLG---------Y---S 213 (369)
T ss_pred --cccc-c-----c---------cCCcccc--c-ccccCCCc---ceEEec---C-----ChHHcC---------C---C
Confidence 0000 0 0 0000000 0 00000011 123322 2 211100 0 0
Q ss_pred hhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHH-HhCCCeEEEEEecCCCCCCCCC
Q 004222 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKI-RANERFAVYVIIPMWPEGDPKT 637 (767)
Q Consensus 559 ~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~-~~grgV~V~Illp~~~~~~~d~ 637 (767)
...+..+|+++|.+||++|+|++|||+|.... +.. .. ....+..+|.+++ + |||+||||+|.+.. .+.
T Consensus 214 ~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~--d~~-~~----~~~~i~~AL~~AAa~--RGV~VRILv~~~~~--~~~ 282 (369)
T PHA03003 214 RTLDADVVLHKIKSAKKSIDLELLSLVPVIRE--DDK-TT----YWPDIYNALIRAAIN--RGVKVRLLVGSWKK--NDV 282 (369)
T ss_pred CCcCHHHHHHHHHHHhhEEEEEEeccccEEee--CCC-Cc----cHHHHHHHHHHHHHc--CCCEEEEEEecCCc--CCc
Confidence 13467999999999999999999999854211 100 00 0124555655542 4 56999999996421 110
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEE
Q 004222 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (767)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~I 717 (767)
.... ..+.|+++|++. .-.+++|.+ .+|+|+||
T Consensus 283 ---------~~~~-------~~~~L~~~G~~~--~i~vri~~~-----------------------------~~H~K~~V 315 (369)
T PHA03003 283 ---------YSMA-------SVKSLQALCVGN--DLSVKVFRI-----------------------------PNNTKLLI 315 (369)
T ss_pred ---------hhhh-------HHHHHHHcCCCC--CceEeeecC-----------------------------CCCceEEE
Confidence 0111 257788989642 112333421 17999999
Q ss_pred EeeeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 718 VDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 718 VDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
|||++++|||+|||.||+.. +.|+++.+.+++++
T Consensus 316 VD~~~a~iGS~N~d~~s~~~--~~e~~~~~~~~~~a 349 (369)
T PHA03003 316 VDDEFAHITSANFDGTHYLH--HAFVSFNTIDKELV 349 (369)
T ss_pred EcCCEEEEeccccCchhhcc--CCCeEEecCChhHH
Confidence 99999999999999999985 59999999999886
No 13
>PRK05443 polyphosphate kinase; Provisional
Probab=99.87 E-value=6e-21 Score=222.03 Aligned_cols=272 Identities=16% Similarity=0.182 Sum_probs=190.6
Q ss_pred ccchHHHHHHHHHhccc-----eEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCc
Q 004222 240 PGTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDK 314 (767)
Q Consensus 240 ~~~~f~~l~~~I~~A~~-----~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~ 314 (767)
|-+.|..+++.|++|.+ +|.++.|.+..+ .+++++|++||++||+|+||+ +.....
T Consensus 346 PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~----------------s~iv~aL~~Aa~~Gk~V~vlv-e~karf-- 406 (691)
T PRK05443 346 PYESFDPVVEFLRQAAADPDVLAIKQTLYRTSKD----------------SPIVDALIEAAENGKQVTVLV-ELKARF-- 406 (691)
T ss_pred CccCchHHHHHHHHhccCCCeeEEEEEEEEecCC----------------HHHHHHHHHHHHcCCEEEEEE-ccCccc--
Confidence 34568899999999998 899999987654 799999999999999999998 644211
Q ss_pred cccccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCC
Q 004222 315 LGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (767)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~ 394 (767)
....+..+.+.|+++||+|.+. ++ .+..|.|+++||++ .+++-..++++|+.|+.
T Consensus 407 --------de~~n~~~~~~L~~aGv~V~y~--~~--------------~~k~HaK~~lid~~-e~~~~~~~~~iGTgN~n 461 (691)
T PRK05443 407 --------DEEANIRWARRLEEAGVHVVYG--VV--------------GLKTHAKLALVVRR-EGGGLRRYVHLGTGNYN 461 (691)
T ss_pred --------cHHHHHHHHHHHHHcCCEEEEc--cC--------------CccceeEEEEEEee-cCCceeEEEEEcCCCCC
Confidence 1122345678899999999642 11 22489999999996 22334458999999998
Q ss_pred CcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeC-hHHHHHHHHHHHHHhhhccchhhhhhhcccc
Q 004222 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG-PAAYDVLINFEQRWRKATKLTELTFKFKRVS 473 (767)
Q Consensus 395 ~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~G-pav~dl~~~F~~~W~~~~~~~~~~~~~~~~~ 473 (767)
+ ++. ..|.|+++.... ..+.++...|...|.......
T Consensus 462 ~-~s~-------------------------------~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~---------- 499 (691)
T PRK05443 462 P-KTA-------------------------------RLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK---------- 499 (691)
T ss_pred c-chh-------------------------------hhccceeEEEeChHHHHHHHHHHHHHhCcCcccc----------
Confidence 8 331 357899998655 588999999999975421100
Q ss_pred ccccchhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCcccccccccccc
Q 004222 474 HWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICA 553 (767)
Q Consensus 474 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~ 553 (767)
+ -.++-+ |..
T Consensus 500 ------------~-------------------------------------~~l~~s---------P~~------------ 509 (691)
T PRK05443 500 ------------L-------------------------------------RKLLVS---------PFT------------ 509 (691)
T ss_pred ------------c-------------------------------------cEEeec---------Ccc------------
Confidence 0 001111 221
Q ss_pred CCccchhHHHHHHHHHHHhccc----eEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEe--
Q 004222 554 KDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII-- 627 (767)
Q Consensus 554 ~~~~~~~~i~~~~~~~I~~A~~----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Ill-- 627 (767)
....+...+.+.|.+|++ +|+|.++|+. |. .+..+|..|++ +||+|+||+
T Consensus 510 ----~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l~-------d~-----------~ii~aL~~As~--~GV~V~liVRG 565 (691)
T PRK05443 510 ----LRERLLELIDREIANARAGKPARIIAKMNSLV-------DP-----------QIIDALYEASQ--AGVKIDLIVRG 565 (691)
T ss_pred ----HHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC-------CH-----------HHHHHHHHHHH--CCCeEEEEEec
Confidence 146788999999999999 9999999954 22 45566666655 459999999
Q ss_pred -----cCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccc
Q 004222 628 -----PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQ 702 (767)
Q Consensus 628 -----p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~ 702 (767)
|..| +.++...+ ++ +...+++ +++| |.+
T Consensus 566 iC~l~pgip-g~sd~i~v--------~s-------~v~r~Le-h~rI--------y~f---------------------- 598 (691)
T PRK05443 566 ICCLRPGVP-GLSENIRV--------RS-------IVGRFLE-HSRI--------YYF---------------------- 598 (691)
T ss_pred ccccCCCCC-CCCCCEEE--------HH-------HHHHHHh-cCEE--------EEE----------------------
Confidence 2111 23343322 12 2455556 3554 322
Q ss_pred cCCccceEEeeeEEEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 703 KNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 703 ~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
. ++ ||.+++||||||+.|||. ++.|+++.|+|++++
T Consensus 599 --~--~g---------d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~~ 634 (691)
T PRK05443 599 --G--NG---------GDEEVYISSADWMPRNLD--RRVEVLFPILDPRLK 634 (691)
T ss_pred --e--CC---------CCcEEEEECCCCCccccc--ceEEEeEEEeCHHHH
Confidence 1 11 888999999999999998 569999999999884
No 14
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.86 E-value=3.2e-21 Score=187.47 Aligned_cols=157 Identities=50% Similarity=0.820 Sum_probs=129.9
Q ss_pred eEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe
Q 004222 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (767)
Q Consensus 12 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (767)
.++|||+|+|+|++|++|++||+.+++++++|+....|...... ++. -.......++||||+|.+++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~g~sDPYv~V~l~~~ 69 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLK----------RPS--SHRHVGKITSDPYATVDLAGA 69 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccc----------ccc--ccccCCCCCcCeEEEEEECCe
Confidence 46899999999999999999999888888888765444322110 000 001123345899999999987
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCc
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g 171 (767)
.+++|+++.++.||+|||+|.|.+..+...|.|+|+|+|.+++++||++.++++++..+...+.|++|....+++.+..|
T Consensus 70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~ 149 (158)
T cd04015 70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA 149 (158)
T ss_pred EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence 77899999999999999999999988777899999999999999999999999999988889999999877788777789
Q ss_pred eEEEEEEEE
Q 004222 172 SIQLELKFT 180 (767)
Q Consensus 172 ~i~l~l~y~ 180 (767)
+|+++++|.
T Consensus 150 ~l~v~~~f~ 158 (158)
T cd04015 150 KIRVSLQFT 158 (158)
T ss_pred EEEEEEEEC
Confidence 999999984
No 15
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.86 E-value=8.5e-21 Score=219.41 Aligned_cols=268 Identities=16% Similarity=0.180 Sum_probs=187.0
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeC---CCCcc
Q 004222 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD---DKTSH 312 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~-----~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D---~~gs~ 312 (767)
-+.|..+++.|++|.+ +|.|+.|.+..+ .+|+++|++||++|++|++++ + .++..
T Consensus 338 Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~----------------s~ii~aL~~Aa~~Gk~V~v~v-eLkArfde~ 400 (672)
T TIGR03705 338 YESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKD----------------SPIIDALIEAAENGKEVTVVV-ELKARFDEE 400 (672)
T ss_pred ccCHHHHHHHHHHHhcCCCceEEEEEEEEecCC----------------cHHHHHHHHHHHcCCEEEEEE-Eehhhccch
Confidence 4558899999999998 899999988654 799999999999999999998 7 33321
Q ss_pred CccccccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEcccc
Q 004222 313 DKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGID 392 (767)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~N 392 (767)
.+....+.|+++|++|.+. . .+++.|+|+++||.+ .|..-...+++|.-|
T Consensus 401 -------------~ni~wa~~le~aG~~viyg--~--------------~~~k~H~K~~li~r~-~~~~~~~y~~igTgN 450 (672)
T TIGR03705 401 -------------ANIRWARRLEEAGVHVVYG--V--------------VGLKTHAKLALVVRR-EGGELRRYVHLGTGN 450 (672)
T ss_pred -------------hhHHHHHHHHHcCCEEEEc--C--------------CCeeeeeEEEEEEEe-eCCceEEEEEecCCC
Confidence 1235667899999999852 1 134699999999986 122234467888888
Q ss_pred CCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeE-EeChHHHHHHHHHHHHHhhhccchhhhhhhcc
Q 004222 393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKATKLTELTFKFKR 471 (767)
Q Consensus 393 i~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vr-i~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~ 471 (767)
+.... ...|+|+++. ..+..+.|+.+.|...|.......
T Consensus 451 ~n~~t--------------------------------a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~-------- 490 (672)
T TIGR03705 451 YHPKT--------------------------------ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK-------- 490 (672)
T ss_pred CCCcc--------------------------------cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh--------
Confidence 76611 1468999998 788899999999998885321110
Q ss_pred ccccccchhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCcccccccccc
Q 004222 472 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 551 (767)
Q Consensus 472 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~ 551 (767)
| . .++ .+ |..
T Consensus 491 ---~--------~----------------------------------------~l~----~~-----P~~---------- 500 (672)
T TIGR03705 491 ---F--------K----------------------------------------HLL----VS-----PFT---------- 500 (672)
T ss_pred ---h--------H----------------------------------------HHH----hC-----cch----------
Confidence 0 0 000 01 221
Q ss_pred ccCCccchhHHHHHHHHHHHhccc----eEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEe
Q 004222 552 CAKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII 627 (767)
Q Consensus 552 ~~~~~~~~~~i~~~~~~~I~~A~~----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Ill 627 (767)
....+...+.+.|.+|++ +|+|.++|+. |. .+..+|..|.+ +||+|++|+
T Consensus 501 ------~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l~-------D~-----------~ii~aL~~As~--aGV~V~Liv 554 (672)
T TIGR03705 501 ------LRKRLLELIDREIENARAGKPARIIAKMNSLV-------DP-----------DLIDALYEASQ--AGVKIDLIV 554 (672)
T ss_pred ------HHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC-------CH-----------HHHHHHHHHHH--CCCeEEEEE
Confidence 146788888999999999 9999999954 22 44556666655 459999999
Q ss_pred -------cCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccc
Q 004222 628 -------PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSD 700 (767)
Q Consensus 628 -------p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~ 700 (767)
|..| |.++...+. + +...+++ |++| |.+.
T Consensus 555 RGiCcL~pgip-g~sd~i~v~--------s-------iv~r~Le-h~rI--------y~f~------------------- 590 (672)
T TIGR03705 555 RGICCLRPGVP-GLSENIRVR--------S-------IVGRFLE-HSRI--------YYFG------------------- 590 (672)
T ss_pred ecccccCCCCC-CCCCCEEEE--------E-------EhhHhhC-cCEE--------EEEe-------------------
Confidence 2111 233332221 1 2444555 5554 2210
Q ss_pred cccCCccceEEeeeEEEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 701 SQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 701 ~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
++ ||.+++||||||+.|||. ++.|+++.|+||+++
T Consensus 591 -------~~---------~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~~ 625 (672)
T TIGR03705 591 -------NG---------GEEKVYISSADWMTRNLD--RRVEVLFPIEDPTLK 625 (672)
T ss_pred -------CC---------CCcEEEEECCCCCCCccc--ceEEEEEEEcCHHHH
Confidence 01 688999999999999998 569999999999886
No 16
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.79 E-value=1.1e-18 Score=161.53 Aligned_cols=117 Identities=23% Similarity=0.495 Sum_probs=101.7
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
|.|.|+|++|++++..+ .+. +||||+|.++.++. +|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~~-kT 37 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAVY-ET 37 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEEE-Ee
Confidence 78999999999988766 454 99999999988764 99
Q ss_pred ccccC-CCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccc-cccCCceeEEEEEccCCCCCCCCCCceE
Q 004222 97 RVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGASI 173 (767)
Q Consensus 97 ~~~~~-~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~-~~~~~~~~~~w~~l~~~~~~~~~~~g~i 173 (767)
+++.+ +.||+|||+|.|++.+....|.|+|||+|.++ |++||.+.+++. .+..|+..+.|++|....++ ...|+|
T Consensus 38 ~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--~~~g~i 115 (121)
T cd04016 38 PTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--DKEGMI 115 (121)
T ss_pred EEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--CCceEE
Confidence 99876 89999999999999877677999999999998 899999999996 57778888999999654443 357999
Q ss_pred EEEEEE
Q 004222 174 QLELKF 179 (767)
Q Consensus 174 ~l~l~y 179 (767)
+|+++|
T Consensus 116 ~l~l~y 121 (121)
T cd04016 116 NLVFSY 121 (121)
T ss_pred EEEEeC
Confidence 999987
No 17
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.79 E-value=2.1e-17 Score=175.58 Aligned_cols=342 Identities=16% Similarity=0.166 Sum_probs=193.8
Q ss_pred chHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCC-CCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLP-RGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 242 ~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~-~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
..+++++++|++|+++++|..|++.-.-.-+ .-.+. ...++.+...|..++.+||.|||.. .......
T Consensus 72 sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~---~~~dsSt~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~------- 140 (456)
T KOG3603|consen 72 STKEAWLELLSTAQEELDIASFYWSLTGKDT---GVVDSSTQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP------- 140 (456)
T ss_pred cHHHHHHHHhhccceEEEEEEEeecccccee---ccCCCcchHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC-------
Confidence 4578999999999999999988765210000 00011 1113789999999999999999986 4331111
Q ss_pred cccccCcHHHHhhhcCCC-ceEEec--ccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcc
Q 004222 321 GVMATHDEETKKFFKHSS-VNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (767)
Q Consensus 321 ~~~~~~~~~~~~~l~~~g-i~v~~~--~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r 397 (767)
.......|++.| ++++-- +.+.. ....|.|++|||++ .-|+||+||++ |
T Consensus 141 ------~~~d~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDW-r 192 (456)
T KOG3603|consen 141 ------PNADLQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDW-R 192 (456)
T ss_pred ------CcccHHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccch-h
Confidence 112344566667 666532 22221 23489999999998 99999999999 5
Q ss_pred cCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeC--hHHHHHHHHHHHHHhhhccchhhhhhhcccccc
Q 004222 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG--PAAYDVLINFEQRWRKATKLTELTFKFKRVSHW 475 (767)
Q Consensus 398 ~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~G--pav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~ 475 (767)
-.+. -..+++.++. .++.||.+.|.++|....... -..+.|
T Consensus 193 SlTq-------------------------------vkElGv~v~NCpclakDL~kiFe~yW~lg~~~s------~~p~~w 235 (456)
T KOG3603|consen 193 SLTQ-------------------------------VKELGVVVRNCPCLAKDLKKIFERYWYLGNAKS------LIPKKW 235 (456)
T ss_pred hccc-------------------------------eeEeeeEEecChhHHHHHHHHHHHHhcCCCCCc------cCCCCC
Confidence 4331 1244555544 589999999999998755431 001123
Q ss_pred ccchhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccccCC
Q 004222 476 RDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKD 555 (767)
Q Consensus 476 ~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~ 555 (767)
+...-..... | .|. .. ..+......++..| |+ ..++.+
T Consensus 236 p~~~st~~N~------~-----------~p~----~~---~~dg~~~~~y~saS---------P~---------~~~~~g 273 (456)
T KOG3603|consen 236 PNCYSTHYNK------P-----------LPM----KI---AVDGTPATPYISAS---------PP---------PLNPSG 273 (456)
T ss_pred cccccccccc------c-----------Ccc----ee---ecCCCCcceEEccC---------CC---------CCCCCC
Confidence 2211110000 0 000 00 00111223333332 11 112222
Q ss_pred ccchhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCC
Q 004222 556 VVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDP 635 (767)
Q Consensus 556 ~~~~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~ 635 (767)
+..-++|+++.|..|+++|||.-.-|.|...+ .+...-+ .+..|++ +|+- |||+||+|+..|+..++
T Consensus 274 ---rt~DL~ail~~i~~A~~fv~isVMdY~Ps~~y---~k~~~fw---~iDdaiR--~aa~--RgV~vR~lvs~~~~~~~ 340 (456)
T KOG3603|consen 274 ---RTWDLEAILNTIDEAQKFVYISVMDYFPSTIY---SKNHRFW---EIDDAIR--RAAV--RGVKVRLLVSCWKHSEP 340 (456)
T ss_pred ---CchhHHHHHHHHHHHhhheeeeehhccchhee---ecCcchh---hhhHHHH--HHhh--cceEEEEEEeccCCCCc
Confidence 23457899999999999999986655544322 0000111 2333344 3333 66999999998865432
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeE
Q 004222 636 KTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (767)
Q Consensus 636 d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~ 715 (767)
. +..+++ ++ ..|...+....+ .+++|.+-... .. + -.....+|+|+
T Consensus 341 ~---m~~~L~----SL----q~l~~~~~~~~i------qvk~f~VP~~~-------------~~---~-ip~~Rv~HnKy 386 (456)
T KOG3603|consen 341 S---MFRFLR----SL----QDLSDPLENGSI------QVKFFIVPQTN-------------IE---K-IPFARVNHNKY 386 (456)
T ss_pred h---HHHHHH----HH----HHhcCccccCce------EEEEEEeCCCc-------------cc---c-Cchhhhcccee
Confidence 2 111111 11 001111212122 34566441100 00 0 01135899999
Q ss_pred EEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCc
Q 004222 716 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 751 (767)
Q Consensus 716 ~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~ 751 (767)
||-++ .++||++||..-.|..+ ..++++|..+.
T Consensus 387 mVTe~-aayIGTSNws~dYf~~T--aG~~ivv~q~~ 419 (456)
T KOG3603|consen 387 MVTES-AAYIGTSNWSGDYFTST--AGTAIVVRQTP 419 (456)
T ss_pred EEeec-ceeeeccCCCccceecc--CceEEEEecCC
Confidence 99998 89999999999998755 78899988773
No 18
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.75 E-value=2e-17 Score=153.84 Aligned_cols=120 Identities=26% Similarity=0.388 Sum_probs=106.4
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
.|+|+|++|++|+..+..+. +||||++.+.+..+.+|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~ 38 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK 38 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence 48999999999998886654 899999999887778999
Q ss_pred cccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEEEE
Q 004222 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (767)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~ 176 (767)
++.++.||+|||.|.|.+......|.|+|||++.++ +++||.+.+++.++..+...+.|++|.+..+ .+..|+|.|.
T Consensus 39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~ 116 (121)
T cd04042 39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLV 116 (121)
T ss_pred eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEE
Confidence 999999999999999999876677999999999996 9999999999999998888999999965443 2468999999
Q ss_pred EEEEe
Q 004222 177 LKFTP 181 (767)
Q Consensus 177 l~y~p 181 (767)
++|.|
T Consensus 117 ~~~~~ 121 (121)
T cd04042 117 VTLTP 121 (121)
T ss_pred EEECC
Confidence 99876
No 19
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=3.6e-17 Score=152.37 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=100.4
Q ss_pred EEEEEEEEeec---CCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004222 18 DLDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (767)
Q Consensus 18 ~l~v~i~~a~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (767)
.|+|+|++|++ |+.++..+. +||||+|.+++++ .
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~-~ 37 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKW-V 37 (126)
T ss_pred CeEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEE-e
Confidence 38999999999 776665554 9999999998875 5
Q ss_pred eeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCC-------CCceeEEEEcccccccCCceeEEEEEccCCCCCCC
Q 004222 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (767)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~-------~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~ 167 (767)
||+++.++.||+|||+|.|.+..+...|.|+|||++.+ ++++||++.++|.++..+.....|++|.+...++.
T Consensus 38 rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~ 117 (126)
T cd08379 38 RTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGV 117 (126)
T ss_pred EcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCc
Confidence 99999999999999999999988777899999999987 69999999999999998989999999976655556
Q ss_pred CCCceEEE
Q 004222 168 KPGASIQL 175 (767)
Q Consensus 168 ~~~g~i~l 175 (767)
+..|+|.+
T Consensus 118 ~~~g~l~~ 125 (126)
T cd08379 118 KKMGELEC 125 (126)
T ss_pred cCCcEEEe
Confidence 67888864
No 20
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.73 E-value=3.3e-17 Score=153.49 Aligned_cols=117 Identities=21% Similarity=0.493 Sum_probs=99.6
Q ss_pred EEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004222 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (767)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (767)
++|+|++|++|+.++..+. +||||+|.+...+ .+|++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v 37 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV 37 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence 5799999999998776554 8999999998755 59999
Q ss_pred ccCCCCCeeeceEEEeecC------CCceEEEEEEEcCCCC-CceeEEEEccccccc--CCceeEEEEEccCCCCCCCCC
Q 004222 99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP 169 (767)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~------~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~--~~~~~~~w~~l~~~~~~~~~~ 169 (767)
++++.||+|||.|.|.+.. ....|.|+|||++.++ +++||.+.|+|.++. .+.....|++|....+++.+.
T Consensus 38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~ 117 (126)
T cd08682 38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE 117 (126)
T ss_pred ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence 9999999999999999876 3456999999999987 999999999999987 567788999996554444456
Q ss_pred CceEEEEEE
Q 004222 170 GASIQLELK 178 (767)
Q Consensus 170 ~g~i~l~l~ 178 (767)
.|+|+|+++
T Consensus 118 ~Gei~l~~~ 126 (126)
T cd08682 118 RGEIEVDIQ 126 (126)
T ss_pred cceEEEEeC
Confidence 899999873
No 21
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.72 E-value=1.3e-16 Score=151.80 Aligned_cols=126 Identities=24% Similarity=0.475 Sum_probs=109.3
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeee
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (767)
-+...|.|.|++|++||.+ .+|||+|.+++..+
T Consensus 8 R~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~~v 40 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKTLY 40 (146)
T ss_pred EEEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCEEE
Confidence 3557899999999999852 47999999999999
Q ss_pred eeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcC-CC----CCceeEEEEcccccccCCceeEEEEEccCCCCCC--
Q 004222 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD-VF----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP-- 166 (767)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~-~~----~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~-- 166 (767)
+||+++.++.+|.|+|+|.|.+.++...|.|.|++.+ .. ++++||++.||++++..+...+.||+|....+++
T Consensus 41 aRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~ 120 (146)
T cd04013 41 ARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKS 120 (146)
T ss_pred EEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCcc
Confidence 9999999999999999999998888778999997543 33 4799999999999999999999999998777665
Q ss_pred -----CCCCceEEEEEEEEecCCCC
Q 004222 167 -----PKPGASIQLELKFTPCDKNP 186 (767)
Q Consensus 167 -----~~~~g~i~l~l~y~p~~~~p 186 (767)
.+..++|+++++|.+....|
T Consensus 121 ~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 121 GGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred ccccccCCCCEEEEEEEEEEeeeCC
Confidence 45678999999999986554
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.71 E-value=1.9e-16 Score=148.35 Aligned_cols=120 Identities=21% Similarity=0.416 Sum_probs=101.1
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
..|+|+|++|++|+..+ . +||||+|.+++..+.+|
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~------------------------------------------~DPYv~v~l~~~~~~kT 38 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---V------------------------------------------PHPYCVISLNEVKVART 38 (126)
T ss_pred eEEEEEEEEeeCCCCCC---C------------------------------------------CCeeEEEEECCEeEEEe
Confidence 46999999999998632 2 89999999988777899
Q ss_pred ccccCCCCCeeeceEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 004222 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~ 174 (767)
+++ ++.||.|||.|.|.+..+. ..+.|.|+|++.++ +++||.+.++|.++..+...+.|++|......+.+..|+|+
T Consensus 39 ~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~ 117 (126)
T cd08400 39 KVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLR 117 (126)
T ss_pred ecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEE
Confidence 985 6899999999999965553 45899999999887 99999999999999988888999999655433345679999
Q ss_pred EEEEEEec
Q 004222 175 LELKFTPC 182 (767)
Q Consensus 175 l~l~y~p~ 182 (767)
|+++|.+.
T Consensus 118 l~l~~~~~ 125 (126)
T cd08400 118 IRARYSHE 125 (126)
T ss_pred EEEEEEcc
Confidence 99999874
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.71 E-value=1.3e-16 Score=148.36 Aligned_cols=119 Identities=26% Similarity=0.427 Sum_probs=100.2
Q ss_pred EEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004222 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (767)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (767)
|.|+|++|++|+.++.... .+||||.|.+....+++|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g-----------------------------------------~sDpYv~v~l~~~~~~kT~v 40 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNK-----------------------------------------MRDCYCTVNLDQEEVFRTKT 40 (121)
T ss_pred eEEEEEEccCCCCCCCCCC-----------------------------------------CcCcEEEEEECCccEEEeeE
Confidence 6899999999997652211 28999999998777789999
Q ss_pred ccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEEEEE
Q 004222 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLEL 177 (767)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~l 177 (767)
+++|.+|+|||+|.|.+......|.|.|||++.++ +++||.+.++++++..+...+.|++|. +.....+..|+|+|++
T Consensus 41 ~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~-~~~~~~~~~G~i~l~~ 119 (121)
T cd08401 41 VEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQ-PVDADSEVQGKVHLEL 119 (121)
T ss_pred EECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEE-ccCCCCcccEEEEEEE
Confidence 99999999999999999876678999999999997 899999999999998777888999994 3232224589999998
Q ss_pred EE
Q 004222 178 KF 179 (767)
Q Consensus 178 ~y 179 (767)
++
T Consensus 120 ~~ 121 (121)
T cd08401 120 RL 121 (121)
T ss_pred EC
Confidence 64
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.69 E-value=1.2e-16 Score=147.89 Aligned_cols=116 Identities=25% Similarity=0.497 Sum_probs=99.3
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
|.|+|+|++|++|++.+..+. +||||+|.+++. +.+|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~-~~kT 37 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGV-TKKT 37 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCC-cccc
Confidence 689999999999998886655 899999999874 4689
Q ss_pred ccccC-CCCCeeeceEEEeecCC-CceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 004222 97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (767)
Q Consensus 97 ~~~~~-~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~ 174 (767)
+++.+ +.||+|||.|.|.+..+ ...|.|+|||++..++++||++.+++.++..+.....|++|. ..+ +..|+|.
T Consensus 38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~-~~~---~~~G~i~ 113 (118)
T cd08681 38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELT-LKG---RYAGEVY 113 (118)
T ss_pred ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEec-cCC---cEeeEEE
Confidence 98765 79999999999999875 356999999999888999999999999987776788999994 333 4679999
Q ss_pred EEEEE
Q 004222 175 LELKF 179 (767)
Q Consensus 175 l~l~y 179 (767)
|+++|
T Consensus 114 l~l~f 118 (118)
T cd08681 114 LELTF 118 (118)
T ss_pred EEEEC
Confidence 99986
No 25
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.68 E-value=5.7e-16 Score=145.11 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=89.4
Q ss_pred CCcEEEEEECC-eeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEE
Q 004222 80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (767)
Q Consensus 80 ~dpyv~v~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~ 157 (767)
+||||++.++. ....+|+++.+|.||+|||.|.|.+......|.|+|||++..+ +++||++.+++.++..+.....|+
T Consensus 18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 97 (126)
T cd08678 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF 97 (126)
T ss_pred cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence 99999999974 3457999999999999999999999766667999999999987 899999999999999877778999
Q ss_pred EccCCCCCCCCCCceEEEEEEEEecCC
Q 004222 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (767)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~y~p~~~ 184 (767)
+|....+...+..|+|.+++.|.+...
T Consensus 98 ~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 98 PLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EecCCCCCCCCcceEEEEEEEEecccc
Confidence 995443323356899999999987653
No 26
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.67 E-value=6.2e-16 Score=148.95 Aligned_cols=122 Identities=27% Similarity=0.417 Sum_probs=102.4
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
.|.|+|++|++|+.++..+. +||||+|.+++. ..+|+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~-~~kTk 37 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQ-VLRTR 37 (150)
T ss_pred CEEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCE-EeeeE
Confidence 37999999999998887665 999999999885 46999
Q ss_pred cccC-CCCCeeeceEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEEcccccccCC----ceeEEEEEccCCCC-----C
Q 004222 98 VLKN-SQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----S 165 (767)
Q Consensus 98 ~~~~-~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~----~~~~~w~~l~~~~~-----~ 165 (767)
++.+ |.||+|||.|.|.+..+. ..|.|+|+|.+..+ +++||++.|+|.++..+ .....|++|....+ +
T Consensus 38 ~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k 117 (150)
T cd04019 38 PSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKK 117 (150)
T ss_pred eccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccc
Confidence 9877 699999999999997654 46999999999876 89999999999998743 45789999965543 3
Q ss_pred CCCCCceEEEEEEEEec
Q 004222 166 PPKPGASIQLELKFTPC 182 (767)
Q Consensus 166 ~~~~~g~i~l~l~y~p~ 182 (767)
+.+..|+|+|+++|.++
T Consensus 118 ~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 118 KRKFASRIHLRLCLDGG 134 (150)
T ss_pred cCcccccEEEEEEecCc
Confidence 44678999999998864
No 27
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.67 E-value=7.4e-16 Score=144.51 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=100.0
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
.|+|+|++|++|+..+..+. +||||+|.+.+.. .+|+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~ 37 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR 37 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence 48999999999998775554 8999999998765 5999
Q ss_pred cccCCCCCeeeceEEEeecCCC----ceEEEEEEEcCCC--CCceeEEEEccccccc-CCceeEEEEEccCCCCCCCCCC
Q 004222 98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG 170 (767)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~--~~~~iG~~~~~l~~~~-~~~~~~~w~~l~~~~~~~~~~~ 170 (767)
++.++.||+|||.|.|.+..+. ..|.|+|||.+.+ ++++||++.++++++. .++....|++|. ..+...+..
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~-~~~~~~~~~ 116 (127)
T cd04022 38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE-KRGLFSRVR 116 (127)
T ss_pred eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEee-eCCCCCCcc
Confidence 9999999999999999987643 4599999999887 4899999999999997 567788999994 333333568
Q ss_pred ceEEEEEEEE
Q 004222 171 ASIQLELKFT 180 (767)
Q Consensus 171 g~i~l~l~y~ 180 (767)
|+|+|++.+.
T Consensus 117 G~l~l~~~~~ 126 (127)
T cd04022 117 GEIGLKVYIT 126 (127)
T ss_pred EEEEEEEEEc
Confidence 9999999874
No 28
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.65 E-value=1.9e-15 Score=142.67 Aligned_cols=127 Identities=24% Similarity=0.470 Sum_probs=102.6
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (767)
+.|.|+|+|++|++|+..+..+.+ .|. +.....+||||++.+++....
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~---~~~-----------------------------~~~~g~~dpyv~v~~~~~~~~ 49 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRH---AVP-----------------------------KKGSQLLDPYVSIDVDDTHIG 49 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhh---ccc-----------------------------ccCccCcCcEEEEEECCEEEe
Confidence 568999999999999987753210 000 000113899999999987778
Q ss_pred eeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccC--CceeEEEEEccCCCCCCCCCCc
Q 004222 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA 171 (767)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~--~~~~~~w~~l~~~~~~~~~~~g 171 (767)
+|+++++|.+|.|||+|.|.+. +...|.|.|+|++.++ +++||++.++|+++.. +...+.|++| ++.|
T Consensus 50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L--------~~~G 120 (132)
T cd04014 50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDL--------EPQG 120 (132)
T ss_pred EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEc--------cCCc
Confidence 9999999999999999999997 4567999999998887 8999999999999886 5678899999 2469
Q ss_pred eEEEEEEEEec
Q 004222 172 SIQLELKFTPC 182 (767)
Q Consensus 172 ~i~l~l~y~p~ 182 (767)
+|+|+++|..+
T Consensus 121 ~l~l~~~~~~~ 131 (132)
T cd04014 121 KLHVKIELKGS 131 (132)
T ss_pred EEEEEEEEecC
Confidence 99999998764
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.65 E-value=1.1e-15 Score=141.98 Aligned_cols=97 Identities=25% Similarity=0.455 Sum_probs=82.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCCCceeEEEEcccccccCC-----cee
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG-----ELI 153 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~-----~~~ 153 (767)
+||||++.+.+. ..+|+++++|.||+|||+|.|.+... ...|.|+|||++..++++||.+.++|.++... ...
T Consensus 17 ~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 95 (121)
T cd08378 17 NDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA 95 (121)
T ss_pred CCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence 899999999874 57999999999999999999998764 45699999999988899999999999998742 235
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004222 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (767)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~y 179 (767)
..|++|....+ .+..|+|+|++.|
T Consensus 96 ~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 96 PQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred cceEEccCCCC--CccceEEEEEEEe
Confidence 68999965544 3568999999987
No 30
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.65 E-value=2.9e-15 Score=138.09 Aligned_cols=113 Identities=26% Similarity=0.375 Sum_probs=98.4
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
.|+|+|++|++|+..+..+. +||||++.+.+.. .+|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~ 37 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSK 37 (116)
T ss_pred CEEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eecc
Confidence 37899999999998876554 8999999997754 6999
Q ss_pred cccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004222 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (767)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l 175 (767)
++.+|.||.|||.|.|.+..+ ...|.|+|||++.++ +++||.+.++|.++..+...+.|++|. + ..|+|++
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~-~------~~G~~~~ 110 (116)
T cd08376 38 VCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELE-D------GEGSLLL 110 (116)
T ss_pred cccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEcc-C------CCcEEEE
Confidence 999999999999999998776 456999999999986 999999999999999888899999993 2 2499999
Q ss_pred EEEEE
Q 004222 176 ELKFT 180 (767)
Q Consensus 176 ~l~y~ 180 (767)
.+.|.
T Consensus 111 ~~~~~ 115 (116)
T cd08376 111 LLTLT 115 (116)
T ss_pred EEEec
Confidence 88874
No 31
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.2e-15 Score=142.25 Aligned_cols=120 Identities=31% Similarity=0.468 Sum_probs=99.5
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-eeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~~~ 95 (767)
|.|+|+|++|++|+..+.... .+||||++.+.+ ..+.+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k 40 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR 40 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence 789999999999986553221 289999999987 56789
Q ss_pred eccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEE-EEEccCCCCCCCCCCceE
Q 004222 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR-WYDIIAPSGSPPKPGASI 173 (767)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~-w~~l~~~~~~~~~~~g~i 173 (767)
|+++.++.+|.|||.|.|.+......|.|+|||.+..+ +++||.+.++|.++........ |..+ ...+ +..|+|
T Consensus 41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~-~~~~---k~~G~i 116 (124)
T cd04044 41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNL-LRNG---KPVGEL 116 (124)
T ss_pred eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhh-hcCC---ccceEE
Confidence 99999999999999999998865677999999999886 8999999999999986665543 4444 4433 457999
Q ss_pred EEEEEEEe
Q 004222 174 QLELKFTP 181 (767)
Q Consensus 174 ~l~l~y~p 181 (767)
+++++|.|
T Consensus 117 ~~~l~~~p 124 (124)
T cd04044 117 NYDLRFFP 124 (124)
T ss_pred EEEEEeCC
Confidence 99999987
No 32
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.65 E-value=1.8e-15 Score=140.16 Aligned_cols=113 Identities=27% Similarity=0.528 Sum_probs=96.7
Q ss_pred EEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--eeeeee
Q 004222 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART 96 (767)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~~~T 96 (767)
|+|+|++|++|+..+..+. +||||++.+.+ ....+|
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT 39 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT 39 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence 7899999999998775554 89999999953 355799
Q ss_pred ccccCCCCCeeeceEEEeecCCC-ceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004222 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l 175 (767)
+++.++.||+|||+|.|.+.... ..|.|+|||++.+++++||++.+++.++..+.....|++| .+. ..|+|.+
T Consensus 40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L-~~~-----~~g~l~~ 113 (119)
T cd04036 40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL-NPQ-----GKEELEV 113 (119)
T ss_pred ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEEC-CCC-----CCceEEE
Confidence 99999999999999999987653 3499999999988889999999999999999999999999 332 3688888
Q ss_pred EEEE
Q 004222 176 ELKF 179 (767)
Q Consensus 176 ~l~y 179 (767)
++.+
T Consensus 114 ~~~~ 117 (119)
T cd04036 114 EFLL 117 (119)
T ss_pred EEEe
Confidence 8764
No 33
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.65 E-value=7.6e-16 Score=140.55 Aligned_cols=100 Identities=18% Similarity=0.335 Sum_probs=85.2
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---e
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A 91 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~ 91 (767)
..+.|+|+|++|++|+ . .+. +||||++++.. .
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~------------------------------------------sDPYVKv~L~~~~k~ 46 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAG------------------------------------------CECYISGCVSVSEGQ 46 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCC------------------------------------------CCeEEEEEEcCCcCc
Confidence 3588999999999998 2 233 89999999942 2
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
.+.+|+++++|.||+|||+|.|.++.. ...|.|+|||+|.++ +++||.+.++++++..+...+.|.+|
T Consensus 47 ~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 47 KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 456999999999999999999998874 345999999999998 99999999999998777777788764
No 34
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.64 E-value=2.4e-15 Score=139.84 Aligned_cols=117 Identities=25% Similarity=0.507 Sum_probs=99.1
Q ss_pred EEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004222 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (767)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (767)
|.|+|++|++|++++..+. +||||++.+++..+.+|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~v 39 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTAT 39 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeeee
Confidence 7899999999999887665 8999999998877789999
Q ss_pred ccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCC-ceeEEEEEccCCCCCCCCCCceEEEE
Q 004222 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQLE 176 (767)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~-~~~~~w~~l~~~~~~~~~~~g~i~l~ 176 (767)
+.++.||+|||.|.|.+......|.|.|||++.++ +++||.+.++++.+..+ ...+.|++|..... ..+..|+|+|.
T Consensus 40 ~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~-~~~~~G~i~l~ 118 (121)
T cd04054 40 VWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDP-DEEVQGEIHLE 118 (121)
T ss_pred EcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCC-CCccccEEEEE
Confidence 99999999999999999877678999999999987 89999999999988743 34778999943221 12357999888
Q ss_pred EE
Q 004222 177 LK 178 (767)
Q Consensus 177 l~ 178 (767)
++
T Consensus 119 ~~ 120 (121)
T cd04054 119 LS 120 (121)
T ss_pred EE
Confidence 75
No 35
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=1.6e-15 Score=143.39 Aligned_cols=120 Identities=21% Similarity=0.397 Sum_probs=99.8
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe------
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------ 91 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~------ 91 (767)
.|+|+|++|++|+.++..+. +||||+|.+.+.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~ 38 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI 38 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence 38999999999998886655 899999999653
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCc------eeEEEEEccCCCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE------LISRWYDIIAPSG 164 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~------~~~~w~~l~~~~~ 164 (767)
...+|+++.+|.+|+|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+. ....|++|... .
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-~ 117 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-S 117 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-C
Confidence 246999999999999999999999876667999999999987 899999999999988543 34589999533 2
Q ss_pred CCCCCCceEEEEEEEE
Q 004222 165 SPPKPGASIQLELKFT 180 (767)
Q Consensus 165 ~~~~~~g~i~l~l~y~ 180 (767)
...+..|+|+|++.|+
T Consensus 118 ~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 118 SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCcceeEEEEEEeeC
Confidence 2235689999999884
No 36
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.64 E-value=1.8e-15 Score=149.83 Aligned_cols=145 Identities=23% Similarity=0.267 Sum_probs=109.9
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
.++++.++++|.+|+++|+|++|.|.++. . . ....|.++|.+|++|||+||||+ |.......
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~-----~--~~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI----T-----E--YGPVILDALLAAARRGVKVRILV-DEWSNTDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc----c-----c--cchHHHHHHHHHHHCCCEEEEEE-cccccCCc------
Confidence 77899999999999999999999988631 0 0 12799999999999999999998 65433220
Q ss_pred cccccCcHHHHhhhcCC---CceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcc
Q 004222 321 GVMATHDEETKKFFKHS---SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (767)
Q Consensus 321 ~~~~~~~~~~~~~l~~~---gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r 397 (767)
.......+.|... |+++...+.... ...++|+|++|||++ ++++||.|+++..
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 0012344555544 788765432110 124699999999999 9999999999944
Q ss_pred cCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh--HHHHHHHHHHHHHhhh
Q 004222 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA 459 (767)
Q Consensus 398 ~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp--av~dl~~~F~~~W~~~ 459 (767)
+ ..++|..+.+.+| ++.++.+.|..+|+..
T Consensus 138 ~--------------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 L--------------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred h--------------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 4 2456999999999 7999999999999864
No 37
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.64 E-value=3.9e-15 Score=137.77 Aligned_cols=117 Identities=31% Similarity=0.542 Sum_probs=99.3
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
|.|+|+|++|++|+.++..+. +||||+|.+.+.. .+|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T 37 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT 37 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence 689999999999998776554 8999999998755 699
Q ss_pred ccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004222 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l 175 (767)
++++++.||.|+|+|.|.+......|.|+|||++..+ +++||.+.+++.++..+. ..|+.|..... ..+..|+|.+
T Consensus 38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~-~~~~~G~i~l 114 (119)
T cd08377 38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKL-RTRAKGSILL 114 (119)
T ss_pred ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCC-CCceeeEEEE
Confidence 9999999999999999998776678999999999876 899999999999987554 47999954432 2346899999
Q ss_pred EEEE
Q 004222 176 ELKF 179 (767)
Q Consensus 176 ~l~y 179 (767)
++.+
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 9875
No 38
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.63 E-value=5.8e-16 Score=177.24 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=113.6
Q ss_pred CCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCc
Q 004222 235 GKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDK 314 (767)
Q Consensus 235 g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~ 314 (767)
|++...++.+..++++|.+||++|+|++++|.|+ ..+.++|+.||+|||+||||+ ++.+...
T Consensus 337 gp~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd----------------~~l~~aL~~Aa~rGV~Vrii~-p~~~D~~- 398 (509)
T PRK12452 337 GPSSDDKSIRNTLLAVMGSAKKSIWIATPYFIPD----------------QETLTLLRLSAISGIDVRILY-PGKSDSI- 398 (509)
T ss_pred CCCchhHHHHHHHHHHHHHhhhEEEEECCccCCC----------------HHHHHHHHHHHHcCCEEEEEc-CCCCChH-
Confidence 3333336789999999999999999999999886 689999999999999999997 6543211
Q ss_pred cccccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCC
Q 004222 315 LGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (767)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~ 394 (767)
.+......+.+.|.++||+++.+... .+|+|++|||++ ++++||+|++
T Consensus 399 -------~~~~a~~~~~~~L~~aGv~I~~y~~~-----------------~lHaK~~ivD~~--------~a~vGS~Nld 446 (509)
T PRK12452 399 -------ISDQASQSYFTPLLKAGASIYSYKDG-----------------FMHAKIVLVDDK--------IATIGTANMD 446 (509)
T ss_pred -------HHHHHHHHHHHHHHHcCCEEEEecCC-----------------CeeeeEEEECCC--------EEEEeCcccC
Confidence 11112245567788899999865321 289999999999 9999999998
Q ss_pred CcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhc
Q 004222 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (767)
Q Consensus 395 ~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~~~ 460 (767)
. |... ..|.+..+...++.|.++++.|.++|..+.
T Consensus 447 ~-RS~~------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 447 V-RSFE------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHST 481 (509)
T ss_pred H-hHhh------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhCe
Confidence 8 4311 245677888888899999999999998754
No 39
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.63 E-value=8e-16 Score=145.65 Aligned_cols=97 Identities=29% Similarity=0.576 Sum_probs=88.8
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeee
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (767)
.+.|.|+|+|++|.+|...|..+. +||||.+++++++.
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~l 40 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQKL 40 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCeee
Confidence 567999999999999998887555 99999999999884
Q ss_pred eeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCcee
Q 004222 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (767)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~ 153 (767)
||++++++.||+|||.|+|.+..+...|+++|||+|.++ ||++|.++|++..+......
T Consensus 41 -kT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 41 -KTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred -eeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 999999999999999999999999999999999999998 99999999999998855443
No 40
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.63 E-value=4.4e-15 Score=139.23 Aligned_cols=120 Identities=22% Similarity=0.419 Sum_probs=99.5
Q ss_pred cEEEEEEEEeecCCCCCC--cchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004222 17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (767)
|.|.|+|++|++|+..+. .+. +||||.+.+.... .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~ 37 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F 37 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence 689999999999998775 443 8999999997654 6
Q ss_pred eeccccCCCCCeeeceEEEeecC-CCceEEEEEEEcCCCC-CceeEEEEccccccc---CCceeEEEEEccCCC-CCCCC
Q 004222 95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA---TGELISRWYDIIAPS-GSPPK 168 (767)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~---~~~~~~~w~~l~~~~-~~~~~ 168 (767)
+|+++++|.+|.|||.|.|.+.. ....|.|+|||++..+ +++||.+.+++.++. .......|++|.... ++...
T Consensus 38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~ 117 (128)
T cd04024 38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117 (128)
T ss_pred ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence 99999999999999999999987 4567999999999886 899999999999987 234467899995442 22234
Q ss_pred CCceEEEEEEE
Q 004222 169 PGASIQLELKF 179 (767)
Q Consensus 169 ~~g~i~l~l~y 179 (767)
..|+|+|+++|
T Consensus 118 ~~G~i~l~~~~ 128 (128)
T cd04024 118 VSGEIHLQFSW 128 (128)
T ss_pred ccceEEEEEEC
Confidence 68999999874
No 41
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.62 E-value=3e-15 Score=139.38 Aligned_cols=105 Identities=25% Similarity=0.490 Sum_probs=90.3
Q ss_pred eEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-
Q 004222 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (767)
Q Consensus 12 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (767)
+.+-.+.|.|+|++|++|+.++ .+. +||||+|.+..
T Consensus 8 l~y~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~~~ 44 (122)
T cd08381 8 ISYKNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLLPD 44 (122)
T ss_pred EEEeCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEeeC
Confidence 3455789999999999999887 544 89999999942
Q ss_pred ---eeeeeeccccCCCCCeeeceEEEee-cC---CCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 91 ---ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 91 ---~~~~~T~~~~~~~~P~w~e~~~~~~-~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
....||++++++.||+|||+|.|++ +. ....|+|+|||++.++ +++||.+.++|.++..+.....|++|
T Consensus 45 ~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 45 PQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 3457999999999999999999997 32 3456999999999988 89999999999999988778899987
No 42
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.62 E-value=7.4e-15 Score=139.27 Aligned_cols=114 Identities=24% Similarity=0.390 Sum_probs=96.1
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
|.|.|+|++|++|++++..+. +||||++.++... .+|
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~-~kT 51 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE-HKT 51 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-eec
Confidence 899999999999998876655 9999999997654 799
Q ss_pred ccccCCCCCeeeceEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEEcccccccC-----CceeEEEEEccCCCCCCCCC
Q 004222 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSPPKP 169 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~-----~~~~~~w~~l~~~~~~~~~~ 169 (767)
+++++|.||.|||.|.|.+.... ..|.|+|||++.++ +++||.+.+++.++.. ......|..+. + ..
T Consensus 52 ~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~---~~ 125 (136)
T cd08375 52 KVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---E---VP 125 (136)
T ss_pred cccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---c---cc
Confidence 99999999999999999987644 45999999999887 8999999999999875 33455666651 1 35
Q ss_pred CceEEEEEEE
Q 004222 170 GASIQLELKF 179 (767)
Q Consensus 170 ~g~i~l~l~y 179 (767)
.|+|+|++.+
T Consensus 126 ~g~i~l~~~~ 135 (136)
T cd08375 126 TGEVVVKLDL 135 (136)
T ss_pred ceeEEEEEEe
Confidence 7999999986
No 43
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.62 E-value=5.7e-15 Score=137.01 Aligned_cols=120 Identities=26% Similarity=0.444 Sum_probs=97.9
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
|.|+|+|++|++|+..+..... .-...+||||+|.+.+ ...+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~------------------------------------~~~g~~dPyv~v~~~~-~~~kT 43 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGG------------------------------------LVKGKSDPYVIVRVGA-QTFKS 43 (121)
T ss_pred CeEEEEEEEccCCccccccccc------------------------------------CCCCCcCCEEEEEECC-EeEEc
Confidence 6799999999999987643100 0001289999999987 55799
Q ss_pred ccccCCCCCeeeceEEEeecC-CCceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004222 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l 175 (767)
++++++.+|+|||.|.|.+.. ....|.|+|||++..++++||.+.+++.++..+.....|++|... ..|+|+|
T Consensus 44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 999999999999999999875 345799999999988889999999999999877778899999322 4699999
Q ss_pred EEEE
Q 004222 176 ELKF 179 (767)
Q Consensus 176 ~l~y 179 (767)
+++|
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 8864
No 44
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.61 E-value=5.1e-15 Score=141.17 Aligned_cols=108 Identities=20% Similarity=0.400 Sum_probs=91.2
Q ss_pred EeeccEEEEEEEEeecCCCCC-CcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--
Q 004222 13 IYLHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-- 89 (767)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-- 89 (767)
.+-.|.|.|+|++|++|+.++ ..+. +||||++++.
T Consensus 25 ~y~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------------------sDPYVKv~Llp~ 62 (146)
T cd04028 25 YDKKGQLEVEVIRARGLVQKPGSKVL------------------------------------------PAPYVKVYLLEG 62 (146)
T ss_pred EeCCCEEEEEEEEeeCCCcccCCCCC------------------------------------------cCCeEEEEEECC
Confidence 556789999999999998764 2333 8999999993
Q ss_pred Ce--eeeeeccccCCCCCeeeceEEEeecCCCceEEEEEE-EcCCCC-CceeEEEEcccccccCCceeEEEEEccCC
Q 004222 90 QA--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (767)
Q Consensus 90 ~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~-d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~ 162 (767)
.. ...||+++++|.||+|||+|.|.+......|.|+|| |++.++ +++||.+.|+|+++..+.....|++|...
T Consensus 63 ~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 63 KKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 22 357999999999999999999999866667999999 577776 89999999999999878888899999543
No 45
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.61 E-value=3.8e-15 Score=137.58 Aligned_cols=100 Identities=22% Similarity=0.300 Sum_probs=85.1
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC-----C-e
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q-A 91 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-----~-~ 91 (767)
.|+|+|++|++|+..+. +. +||||+|++- . .
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~ 37 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK 37 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence 48999999999987663 43 8999999982 2 2
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCC----CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEcc
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~ 160 (767)
.+.+|+++.+|.||+|||+|.|.+... ...|.|.|+|++..+ +++||++.+|+.++..++....|++|.
T Consensus 38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 346899999999999999999998753 234999999999877 899999999999999888889999993
No 46
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.61 E-value=7.1e-15 Score=137.01 Aligned_cols=117 Identities=26% Similarity=0.426 Sum_probs=97.6
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
+|+|+|++|++|+.++..+. +||||+|.+.+.. .+|+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~ 37 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETS 37 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eece
Confidence 48999999999998876554 8999999997754 6999
Q ss_pred cccCCCCCeeeceEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCC---CCCCCce
Q 004222 98 VLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGAS 172 (767)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~---~~~~~g~ 172 (767)
++++|.||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.++|.++..+.....|+.|...... ..+..|.
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~ 117 (123)
T cd04025 38 VVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGS 117 (123)
T ss_pred eecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEE
Confidence 9999999999999999988754 56999999999887 89999999999999877677899999643322 2355788
Q ss_pred EEEEE
Q 004222 173 IQLEL 177 (767)
Q Consensus 173 i~l~l 177 (767)
|.+.+
T Consensus 118 l~~~~ 122 (123)
T cd04025 118 LRLKV 122 (123)
T ss_pred EEEEe
Confidence 88776
No 47
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.61 E-value=3.9e-15 Score=164.33 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHH-hcCCEEEEEEeCCCCccCccccccCc
Q 004222 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLVWDDKTSHDKLGVKTPG 321 (767)
Q Consensus 243 ~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa-~rGV~VriLv~D~~gs~~~~~~~~~~ 321 (767)
..++++++|++||++|+|++|+|.|+.. .+. ....+..|.++|++|| +|||+||||+ |..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~~---~d~---~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVIR---EDD---KTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEEe---eCC---CCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc-------
Confidence 4689999999999999999999988521 110 0001258999999885 9999999997 87654221
Q ss_pred ccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCCC
Q 004222 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP 401 (767)
Q Consensus 322 ~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~ 401 (767)
......+.|.++|+++... .+++ .+.+|+|++|||++ ++++||+|+++.++..
T Consensus 283 ----~~~~~~~~L~~~G~~~~i~-------vri~-------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~- 335 (369)
T PHA03003 283 ----YSMASVKSLQALCVGNDLS-------VKVF-------RIPNNTKLLIVDDE--------FAHITSANFDGTHYLH- 335 (369)
T ss_pred ----hhhhHHHHHHHcCCCCCce-------Eeee-------cCCCCceEEEEcCC--------EEEEeccccCchhhcc-
Confidence 0124567788888542100 0000 11289999999999 9999999998844421
Q ss_pred CCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhc
Q 004222 402 EHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (767)
Q Consensus 402 ~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~~~ 460 (767)
..+.++ ....|++|.+++..|.++|+...
T Consensus 336 -----------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~~ 364 (369)
T PHA03003 336 -----------------------------HAFVSF-NTIDKELVKELSAIFERDWTSSY 364 (369)
T ss_pred -----------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCcc
Confidence 122332 24679999999999999998643
No 48
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.59 E-value=2.5e-14 Score=134.02 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=100.4
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (767)
+..|+|+|++|++|+..+..+. +||||++.+++.. .+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k 38 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR 38 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence 4679999999999998776555 9999999998765 69
Q ss_pred eccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCC-CCCCCCCceEE
Q 004222 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS-GSPPKPGASIQ 174 (767)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~-~~~~~~~g~i~ 174 (767)
|++++++.+|+|||.|.|.+......|.|+|||++..++++||.+.+++..+.. ....|++|.... ....+..|+|.
T Consensus 39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~ 116 (126)
T cd04046 39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTIS 116 (126)
T ss_pred eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEE
Confidence 999999999999999999988777789999999999889999999999987653 334677773211 12335789999
Q ss_pred EEEEEEec
Q 004222 175 LELKFTPC 182 (767)
Q Consensus 175 l~l~y~p~ 182 (767)
+++.+.+.
T Consensus 117 ~~~~~~~~ 124 (126)
T cd04046 117 VKVTSSDD 124 (126)
T ss_pred EEEEEccc
Confidence 99987764
No 49
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.58 E-value=1.2e-14 Score=162.61 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=105.5
Q ss_pred CceeeEEEeeccCCCCCCCCCCccccccccccccCCccchhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCC
Q 004222 520 ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA 599 (767)
Q Consensus 520 ~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~ 599 (767)
..+.++++.|+|.+- .|+. ...+.+++|+++|.+||++|+|++|||++... .
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~-----~---- 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSDE-----V---- 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCcc-----c----
Confidence 356789999986652 1221 12578999999999999999999999995310 0
Q ss_pred CCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEee
Q 004222 600 DNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYC 679 (767)
Q Consensus 600 ~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~ 679 (767)
....+..+..+|+++++ |||+|+||++.. + .+. . ..+.|.++|+++ ..|.
T Consensus 56 ~~~~G~~i~~aL~~aA~--rGV~VRIL~d~~--~---~~~----------~-------~~~~L~~aGv~v------~~~~ 105 (424)
T PHA02820 56 GTNFGTMILNEIIQLPK--RGVRVRIAVNKS--N---KPL----------K-------DVELLQMAGVEV------RYID 105 (424)
T ss_pred cchhHHHHHHHHHHHHH--CCCEEEEEECCC--C---Cch----------h-------hHHHHHhCCCEE------EEEe
Confidence 00114567777887766 559999999952 1 110 0 146688899875 1332
Q ss_pred cCCccCCCcccccCCCCcccccccCCccceEEeeeEEEEeeeEeeeccCCcCCcCCCCCCCccceeeecC-Ccc
Q 004222 680 LGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQ-PHH 752 (767)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~-p~~ 752 (767)
.. .+ .+.++|+|++|||+++++|||+|||.||+.. +.|+++.+.+ +++
T Consensus 106 ~~---------------------~~--~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~--n~E~gv~i~~~g~~ 154 (424)
T PHA02820 106 IT---------------------NI--LGGVLHTKFWISDNTHIYLGSANMDWRSLTQ--VKELGIAIFNNSNL 154 (424)
T ss_pred cC---------------------CC--CcccceeeEEEECCCEEEEeCCcCChhhhhh--CCceEEEEecchHH
Confidence 10 01 1358999999999999999999999999985 4899999875 443
No 50
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=3.1e-14 Score=133.49 Aligned_cols=103 Identities=35% Similarity=0.593 Sum_probs=89.7
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEE
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~ 155 (767)
+||||+|.+.+.. .+|++++++.+|+|||.|.|.+..+ ...|.|+|||++..+ +++||.+.+++.++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 8999999998755 6999999999999999999998754 456999999999887 8999999999999998888899
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEEecCCC
Q 004222 156 WYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (767)
Q Consensus 156 w~~l~~~~~~~~~~~g~i~l~l~y~p~~~~ 185 (767)
|++|....+.+ ..|+|.++++|.|...+
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99996555533 36899999999998554
No 51
>PRK13912 nuclease NucT; Provisional
Probab=99.57 E-value=3e-14 Score=141.29 Aligned_cols=141 Identities=16% Similarity=0.254 Sum_probs=100.6
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
.+++..++++|++|+++|+|+.|.|.. ..+.++|.+|++|||+||||+ |+.++...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 467889999999999999999988754 589999999999999999996 88754321
Q ss_pred cccccCcHHHHhhhc-CCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccC
Q 004222 321 GVMATHDEETKKFFK-HSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (767)
Q Consensus 321 ~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d 399 (767)
.......+. ..++++.......... ......+|+|++|||++ ++++||.|++...+.
T Consensus 88 ------~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~ 145 (177)
T PRK13912 88 ------DQSTIGYLDKYPNIKVCLLKGLKAKN--------GKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE 145 (177)
T ss_pred ------chhHHHHHHhCCCceEEEecCccccC--------cccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence 011112222 2456655421111100 01123599999999998 999999999984431
Q ss_pred CCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHHhhh
Q 004222 400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWRKA 459 (767)
Q Consensus 400 ~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpa-v~dl~~~F~~~W~~~ 459 (767)
.-+++.+.+..|. +.++.+.|.+.|...
T Consensus 146 --------------------------------~N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 --------------------------------NNYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred --------------------------------cCCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 1236788888884 688999999999764
No 52
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.57 E-value=1.5e-14 Score=135.06 Aligned_cols=102 Identities=26% Similarity=0.499 Sum_probs=90.1
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEE--CCeee
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQATV 93 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~~~ 93 (767)
.|.|.|+|++|++|+.++..+. +||||++.+ ....+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~~ 52 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSNT 52 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCCc
Confidence 4789999999999998876554 899999999 33456
Q ss_pred eeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
.+|++++++.+|+|||+|.|.+... ...|.|+|||.+.++ +++||.+.++++++..++....|++|
T Consensus 53 ~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 53 KQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred EeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 8999999999999999999998764 346999999999987 89999999999999977788999998
No 53
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.57 E-value=1.2e-14 Score=134.52 Aligned_cols=104 Identities=18% Similarity=0.339 Sum_probs=88.4
Q ss_pred EeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--
Q 004222 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (767)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-- 90 (767)
.+-++.|.|+|++|++|+.++ .+. +||||++.+..
T Consensus 8 ~~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~p~~ 44 (119)
T cd08685 8 EGQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLSPDK 44 (119)
T ss_pred EEcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEEeCC
Confidence 456789999999999999876 443 89999999943
Q ss_pred --eeeeeeccccCCCCCeeeceEEEeecCCC--ceEEEEEEEcCCCC--CceeEEEEcccccccCCceeEEEEEc
Q 004222 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 91 --~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~l~~~v~d~~~~~--~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
....||+++.++.+|+|||+|.|.+.... ..|.|+|||.+..+ +++||.+.|+|.++..+.....||.|
T Consensus 45 ~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 45 EVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 34569999999999999999999987632 35889999998774 68999999999999878888999975
No 54
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.56 E-value=2.1e-14 Score=134.05 Aligned_cols=103 Identities=33% Similarity=0.540 Sum_probs=90.0
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--ee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~ 92 (767)
-.+.|+|+|++|++|+..+..+. +||||+|.+.. ..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKK 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 34789999999999998776554 89999999842 34
Q ss_pred eeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
+.+|++++++.||+|||.|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+...+.|++|
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 67999999999999999999998753 346999999999987 89999999999999888889999998
No 55
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.56 E-value=1.8e-14 Score=134.71 Aligned_cols=101 Identities=23% Similarity=0.411 Sum_probs=87.0
Q ss_pred cEEEEEEEEeecCCCCCCc-chhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004222 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (767)
+.|.|+|++|++|+.++.. +. +||||++.+.. .
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~------------------------------------------~dpyVkv~l~p~~~~~ 52 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQR------------------------------------------SDPYVKTYLLPDKSNR 52 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCC------------------------------------------CCcEEEEEEEcCCCcc
Confidence 5899999999999987754 33 89999999932 2
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
.+.||+++++|.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.|+|.++..+.....|++|
T Consensus 53 ~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 53 GKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred ccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 346999999999999999999998652 346999999999987 89999999999999877778899987
No 56
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.55 E-value=1.7e-14 Score=131.72 Aligned_cols=100 Identities=32% Similarity=0.540 Sum_probs=86.5
Q ss_pred EEEEEEEeecCCCCCC-cchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 19 l~v~i~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
|+|+|++|++|+.++. .+. +||||++.+++ .+.||+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~-~~~kT~ 37 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL------------------------------------------TDAFVEVKFGS-TTYKTD 37 (110)
T ss_pred CEEEEEEEECCCccccCCCC------------------------------------------CCceEEEEECC-eeEecc
Confidence 6899999999998773 232 89999999987 557999
Q ss_pred cccCCCCCee-eceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccC---CceeEEEEEccC
Q 004222 98 VLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA 161 (767)
Q Consensus 98 ~~~~~~~P~w-~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~---~~~~~~w~~l~~ 161 (767)
++.++.||.| ||.|.|.+..+ ...|.|+|||++.++ +++||++.+++.++.. +...+.||+|++
T Consensus 38 v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 38 VVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999 99999998774 256999999999987 8999999999999986 456889999954
No 57
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.55 E-value=9.1e-14 Score=130.06 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=95.7
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--eeeee
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR 95 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~~~ 95 (767)
.|+|+|++|++|+..+..+. +||||++.+.+ ....+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k 39 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK 39 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence 58999999999998776544 89999999864 34679
Q ss_pred eccccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCC-CceeEEEEcccccccC---CceeEEEEEccCCCCCCCCCC
Q 004222 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG 170 (767)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~---~~~~~~w~~l~~~~~~~~~~~ 170 (767)
|+++.++.+|.|||+|.|.+... ...|.|+|||++.++ +++||++.++|..+.. +.....|++| . +.
T Consensus 40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l-~-------~~ 111 (126)
T cd04043 40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-D-------TQ 111 (126)
T ss_pred ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEc-C-------CC
Confidence 99999999999999999999875 456999999999986 8999999999987643 4467789999 2 35
Q ss_pred ceEEEEEEEEec
Q 004222 171 ASIQLELKFTPC 182 (767)
Q Consensus 171 g~i~l~l~y~p~ 182 (767)
|++++.+.+.-.
T Consensus 112 g~i~l~~~~~~~ 123 (126)
T cd04043 112 GRLLLRVSMEGE 123 (126)
T ss_pred CeEEEEEEEeee
Confidence 889888887654
No 58
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.55 E-value=4.1e-14 Score=128.11 Aligned_cols=96 Identities=26% Similarity=0.511 Sum_probs=84.3
Q ss_pred EEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004222 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (767)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (767)
|.|+|++|++|+..+..+. +||||++.+++. ..+|++
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~-~~kT~v 38 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGKT-TQKSKV 38 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECCE-EEeCcc
Confidence 7899999999998775444 999999999884 579999
Q ss_pred ccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCCCceeEEEEcccccccCC--ceeEEEEEc
Q 004222 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--ELISRWYDI 159 (767)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~--~~~~~w~~l 159 (767)
+.+|.+|+|||.|.|.+..+ ...|.|+|+|.+. +++||++.++|.++... .....||+|
T Consensus 39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L 100 (105)
T cd04050 39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPL 100 (105)
T ss_pred ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEec
Confidence 99999999999999999875 4569999999987 88999999999998754 368899999
No 59
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.55 E-value=3.2e-14 Score=133.03 Aligned_cols=104 Identities=22% Similarity=0.396 Sum_probs=88.0
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
..+.|.|+|++|++|+..+.... .+||||+|.+..
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~-----------------------------------------~~DpyVkv~l~p~~~~ 51 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKK-----------------------------------------RSNPYVKTYLLPDKSR 51 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCC-----------------------------------------CCCcEEEEEEEcCCcc
Confidence 35789999999999987664211 289999999932
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
....||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.++|.++......+.|++|
T Consensus 52 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 52 QSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred ccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 2356999999999999999999998653 346999999999987 89999999999999988889999997
No 60
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.54 E-value=4.6e-14 Score=131.60 Aligned_cols=117 Identities=25% Similarity=0.374 Sum_probs=94.4
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
.|+|+|++|++|+.++..+. +||||++.+++..+.+|+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~ 38 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTD 38 (123)
T ss_pred CeEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEcc
Confidence 37899999999998876554 899999999755668999
Q ss_pred cccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC---CceeEEEEcccccccCCc-eeEEEEEccCCCCC-CCCCCce
Q 004222 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS-PPKPGAS 172 (767)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~---~~~iG~~~~~l~~~~~~~-~~~~w~~l~~~~~~-~~~~~g~ 172 (767)
++.++.||.|||.|.|.+.. ...|.|+|||++.++ +++||.+.+++.++.... ....|++|...... .....|+
T Consensus 39 v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~ 117 (123)
T cd08382 39 VAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGK 117 (123)
T ss_pred EEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeE
Confidence 99999999999999999976 567999999999886 479999999999987433 34679998433321 1234788
Q ss_pred EEEEE
Q 004222 173 IQLEL 177 (767)
Q Consensus 173 i~l~l 177 (767)
|.+++
T Consensus 118 v~~~~ 122 (123)
T cd08382 118 IVVSL 122 (123)
T ss_pred EEEEe
Confidence 88775
No 61
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.54 E-value=2.9e-14 Score=133.69 Aligned_cols=102 Identities=23% Similarity=0.346 Sum_probs=86.5
Q ss_pred ccEEEEEEEEeecCCCCCCc-chhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
.+.|.|+|++|++|+.++.. +. +||||++.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~------------------------------------------~dpYVkv~llp~~~~ 51 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK------------------------------------------CHPYVKVCLLPDKSH 51 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence 37899999999999987753 43 89999999932
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccC---CceeEEEEEc
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDI 159 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~---~~~~~~w~~l 159 (767)
....||++++++.||+|||+|.|++... ...|.|.|||.+.++ +++||.+.|+|.++.. +.....||+|
T Consensus 52 ~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 52 NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 2356999999999999999999998663 356999999999887 8999999999999874 4577899987
No 62
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.54 E-value=1.1e-13 Score=131.30 Aligned_cols=118 Identities=19% Similarity=0.359 Sum_probs=95.8
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
.|+|.|++|++|+.++..+. +||||+|.+.+.. .+|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~ 38 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE 38 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence 58999999999998886665 9999999997654 6999
Q ss_pred cccCCCCCeeeceEEEeecCC----------CceEEEEEEEcCCCC-CceeEEEEc-cccccc---CCceeEEEEEccCC
Q 004222 98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIA---TGELISRWYDIIAP 162 (767)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~----------~~~l~~~v~d~~~~~-~~~iG~~~~-~l~~~~---~~~~~~~w~~l~~~ 162 (767)
++++|.||+|||.|.|.+... ...|.|+|||++..+ +++||++.+ ++..+. .+.....|++|. .
T Consensus 39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~ 117 (135)
T cd04017 39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K 117 (135)
T ss_pred eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence 999999999999999985321 135899999999987 899999987 544444 245678999994 3
Q ss_pred CCCCCCCCceEEEEEEEEec
Q 004222 163 SGSPPKPGASIQLELKFTPC 182 (767)
Q Consensus 163 ~~~~~~~~g~i~l~l~y~p~ 182 (767)
.+ ...|+|+|++.+.+.
T Consensus 118 ~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 118 GG---QSAGELLAAFELIEV 134 (135)
T ss_pred CC---CchhheeEEeEEEEe
Confidence 33 368999999999875
No 63
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.54 E-value=7e-14 Score=131.14 Aligned_cols=114 Identities=25% Similarity=0.499 Sum_probs=94.3
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
.|+|+|++|++|+..+..+. +||||+|.+.+. ..+|+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~-~~kT~ 38 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKT-KKRTK 38 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCE-eeecc
Confidence 68999999999998886554 899999999764 46999
Q ss_pred cccCCCCCeeeceEEEeecCCCceEEEEEEEcCCC------------CCceeEEEEcccccccCCceeEEEEEccCCCCC
Q 004222 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (767)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~------------~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~ 165 (767)
++.++.+|.|||.|.|.+..+...|.|+|||+|.. ++++||.+.+++.++.. ....|+.|...+ .
T Consensus 39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~-~ 115 (127)
T cd04027 39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT-D 115 (127)
T ss_pred eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC-C
Confidence 99999999999999999876666799999999852 38999999999998763 356899995443 3
Q ss_pred CCCCCceEEEEE
Q 004222 166 PPKPGASIQLEL 177 (767)
Q Consensus 166 ~~~~~g~i~l~l 177 (767)
.....|+|+|++
T Consensus 116 ~~~~~G~i~~~~ 127 (127)
T cd04027 116 KSAVSGAIRLHI 127 (127)
T ss_pred CCcEeEEEEEEC
Confidence 335689998864
No 64
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=5.6e-14 Score=130.41 Aligned_cols=104 Identities=27% Similarity=0.457 Sum_probs=92.4
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
|.|+|+|++|++|+..+..+. +||||+|.+.+..+.+|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT 38 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT 38 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence 679999999999998876554 89999999987777899
Q ss_pred ccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCC
Q 004222 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~ 163 (767)
+++.++.+|.|||.|.|.+..+...|.|+|||++.++ +++||.+.+++.++..+ ..+.||.+++.+
T Consensus 39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999999887778999999999987 89999999999999865 667898886654
No 65
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.53 E-value=3.7e-14 Score=132.05 Aligned_cols=102 Identities=24% Similarity=0.485 Sum_probs=86.0
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C---
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--- 90 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~--- 90 (767)
.+.|.|.|++|++|++++..+. +||||++.+- .
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~------------------------------------------~dpyVKv~Llp~~~~~ 50 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN------------------------------------------SKVYVRVALLPCSSST 50 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC------------------------------------------CCeEEEEEEccCCCCC
Confidence 4689999999999998764443 8999999983 2
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCC-ceeEEEEEc
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDI 159 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~-~~~~~w~~l 159 (767)
....||++++++.||+|||+|.|++... ...|.|+|||.+.++ +++||.+.|+|.++... +....||+|
T Consensus 51 ~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 51 SCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 2367999999999999999999998763 356999999999987 89999999999999644 457789875
No 66
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.53 E-value=5.1e-14 Score=135.06 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=69.7
Q ss_pred CCcEEEEEECCe----eeeeeccccCCCCCeeeceEEEeecC----------------CCceEEEEEEEcCCCC-CceeE
Q 004222 80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG 138 (767)
Q Consensus 80 ~dpyv~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~~----------------~~~~l~~~v~d~~~~~-~~~iG 138 (767)
+||||+|.+... ...+|+++++|.||+|||+|.|.+.. ....|.|.|||.+.++ +++||
T Consensus 19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG 98 (148)
T cd04010 19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG 98 (148)
T ss_pred CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence 899999999542 34699999999999999999999851 1235999999999886 89999
Q ss_pred EEEcccccccCC-ceeEEEEEccCC
Q 004222 139 TAAIPAHTIATG-ELISRWYDIIAP 162 (767)
Q Consensus 139 ~~~~~l~~~~~~-~~~~~w~~l~~~ 162 (767)
.+.|++..+..+ .....||+|...
T Consensus 99 ~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 99 EVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEecccccccCCcCcceeecCCc
Confidence 999999999876 567899999543
No 67
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.53 E-value=7.8e-14 Score=128.63 Aligned_cols=97 Identities=22% Similarity=0.340 Sum_probs=84.4
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
+.|.|+|++|++|+.++ . .||||+|.+++.+ .+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~------------------------------------------~dPYV~Ik~g~~k-~kT 35 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---K------------------------------------------FNTYVTLKVQNVK-STT 35 (127)
T ss_pred ceEEEEEEEeeCCCCCC---C------------------------------------------CCCeEEEEECCEE-eEe
Confidence 68999999999997433 1 6899999998755 699
Q ss_pred ccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEcccccccCCcee--EEEEEcc
Q 004222 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII 160 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~--~~w~~l~ 160 (767)
++.+++ ||.|||.|.|.+......|.|+|||++.++|++||++.|+|+++..+... ..||+|.
T Consensus 36 ~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 36 IAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999884 99999999999988777799999999988899999999999999865544 7899994
No 68
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.53 E-value=1.3e-13 Score=132.47 Aligned_cols=99 Identities=19% Similarity=0.391 Sum_probs=82.6
Q ss_pred CCcEEEEEE----CCeeeeeeccccCCCCCeeeceEEEeecCC---------CceEEEEEEEcCCC--CCceeEEEEccc
Q 004222 80 SDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF--GAQIIGTAAIPA 144 (767)
Q Consensus 80 ~dpyv~v~~----~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~---------~~~l~~~v~d~~~~--~~~~iG~~~~~l 144 (767)
+||||++++ ......||+++++|.||+|||+|.|.+... ...|.|+|||.+.+ +|++||++.++|
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 899999998 334567999999999999999999998654 23599999999987 399999999999
Q ss_pred ccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEEe
Q 004222 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (767)
Q Consensus 145 ~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~l~y~p 181 (767)
..+........|++|... .+ ..+|+|.++++...
T Consensus 105 ~~l~~~~~~~~~~~L~~~-~k--~~Gg~l~v~ir~r~ 138 (155)
T cd08690 105 EPLETKCEIHESVDLMDG-RK--ATGGKLEVKVRLRE 138 (155)
T ss_pred ccccccCcceEEEEhhhC-CC--CcCCEEEEEEEecC
Confidence 999888778889999532 22 35789999988554
No 69
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.53 E-value=4.9e-14 Score=131.73 Aligned_cols=113 Identities=26% Similarity=0.437 Sum_probs=94.1
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
.|+|+|++|++|+..+..+. +||||+|.+.+....+|+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~ 38 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP 38 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence 48999999999998775544 899999999874456999
Q ss_pred ccc-CCCCCeeeceEEEeecCC-----CceEEEEEEEcCCCC-CceeEEEEcccccccCCce-----eEEEEEccCCCCC
Q 004222 98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----ISRWYDIIAPSGS 165 (767)
Q Consensus 98 ~~~-~~~~P~w~e~~~~~~~~~-----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~-----~~~w~~l~~~~~~ 165 (767)
+.. ++.+|.|||.|.|.+..+ ...|.|+|||++.++ +++||.+.+++.++..+.. ...|++|..++|
T Consensus 39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g- 117 (125)
T cd04051 39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG- 117 (125)
T ss_pred cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-
Confidence 975 589999999999999887 467999999999866 8999999999999985443 468999976665
Q ss_pred CCCCCceEEE
Q 004222 166 PPKPGASIQL 175 (767)
Q Consensus 166 ~~~~~g~i~l 175 (767)
+..|+|.+
T Consensus 118 --~~~G~~~~ 125 (125)
T cd04051 118 --KPQGVLNF 125 (125)
T ss_pred --CcCeEEeC
Confidence 46788764
No 70
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.52 E-value=8e-14 Score=126.76 Aligned_cols=96 Identities=21% Similarity=0.368 Sum_probs=79.9
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
|.|.|+|++|++|+..+.... ....+||||+|+++.. +.||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~--------------------------------------~~~~~DPYv~v~~~~~-~~kT 41 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR--------------------------------------TGFDMDPFVIISFGRR-VFRT 41 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC--------------------------------------CCCccCceEEEEECCE-eEee
Confidence 689999999999998764321 0012799999999764 4699
Q ss_pred ccccCCCCCeeeceEEEeecCCC--ceEEEEEEEcCCCC-CceeEEEEcccccccCCc
Q 004222 97 RVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~--~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~ 151 (767)
++++++.||+|||.|.|.+.... ..|.|+|||++.++ +++||++.++|.++..+.
T Consensus 42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 99999999999999999986643 35999999999997 999999999999988553
No 71
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.51 E-value=4.2e-14 Score=129.38 Aligned_cols=98 Identities=28% Similarity=0.465 Sum_probs=83.9
Q ss_pred cEEEEEEEEeecCCCCCCc-chhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--eee
Q 004222 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~ 93 (767)
|.|+|+|++|++|+.++.. +. +||||+|.+.. ...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~ 38 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL 38 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence 6899999999999988765 44 89999999843 345
Q ss_pred eeeccccCCCCCeeeceEEEeecCC----CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
.+|+++++|.||+|||.|.|.+... ...|.|+|||+|.++ +++||.+.+++.++. ....|+++
T Consensus 39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~ 106 (111)
T cd04041 39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGR 106 (111)
T ss_pred EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCcc
Confidence 7999999999999999999987653 356999999999997 899999999999998 34468776
No 72
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.51 E-value=2e-13 Score=125.83 Aligned_cols=96 Identities=26% Similarity=0.479 Sum_probs=75.5
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEE
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~ 155 (767)
+||||.+.+.+..+++|+++++ .+|.|||+|.|.+... ...|.|.++|.+... +..+|.+. +..+..+...+.
T Consensus 18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~--l~~~~~~~~~~~ 94 (117)
T cd08383 18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVA--LSKLDLGQGKDE 94 (117)
T ss_pred CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEE--ecCcCCCCccee
Confidence 8999999998877789999999 9999999999999873 345888888887665 56666655 555555777889
Q ss_pred EEEccCCCCCCCCCCceEEEEEEE
Q 004222 156 WYDIIAPSGSPPKPGASIQLELKF 179 (767)
Q Consensus 156 w~~l~~~~~~~~~~~g~i~l~l~y 179 (767)
|++|....+ .....|+|+|+++|
T Consensus 95 w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 95 WFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred EEECccCCC-CCCcCceEEEEEEC
Confidence 999954433 22468999999986
No 73
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.51 E-value=9.5e-14 Score=130.06 Aligned_cols=101 Identities=27% Similarity=0.537 Sum_probs=87.8
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----ee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~~ 92 (767)
+.|+|+|++|++|+..+..+. +||||+|.+.. ..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 53 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLLPDKSKST 53 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEEcCCCCCc
Confidence 789999999999998876544 89999999842 34
Q ss_pred eeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCC--C-CceeEEEEcccccccCCceeEEEEEc
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~--~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
..+|++++++.||+|||+|.|.+... ...|.|.|||.+.+ + +++||.+.++|.++..++....|++|
T Consensus 54 ~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 54 RRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred eEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 57999999999999999999998653 35699999999875 4 89999999999999888888999987
No 74
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=1.9e-13 Score=125.64 Aligned_cols=111 Identities=27% Similarity=0.449 Sum_probs=93.4
Q ss_pred EEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004222 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (767)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (767)
|+|+|++|++|+..+..+. +||||+|.+.+....+|++
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v 38 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT 38 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence 5799999999998775444 8999999997766689999
Q ss_pred ccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 004222 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (767)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~ 174 (767)
+.++.+|.|||+|.|.+... ...|.|+|||++..+ +++||.+.+++.++..+.....|++|....+ ...|.|.
T Consensus 39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~---~~~~~~~ 113 (115)
T cd04040 39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG---GKLGAVF 113 (115)
T ss_pred ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC---ccCceEE
Confidence 99999999999999998764 456999999999887 8999999999999998888899999954333 2355554
No 75
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.50 E-value=1.7e-13 Score=128.74 Aligned_cols=102 Identities=27% Similarity=0.401 Sum_probs=85.0
Q ss_pred ccEEEEEEEEeecCCCCCCc-chhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004222 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (767)
.+.|+|+|++|++|+.++.. +. +||||+|.+. ...
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyV~v~l~~~~~~ 52 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGT------------------------------------------SDPYVKLQLLPEKEH 52 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCC------------------------------------------cCCEEEEEEeCCcCc
Confidence 46899999999999987754 33 8999999984 234
Q ss_pred eeeeccccCCCCCeeeceEEEe-ecC---CCceEEEEEEEcCCCC-CceeEEEEcccccccCC--ceeEEEEEc
Q 004222 93 VARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI 159 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~--~~~~~w~~l 159 (767)
+.||++++++.||+|||+|.|. +.. ....|.|+|||+|.++ +++||.+.++|.++..+ ++...|++|
T Consensus 53 ~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 53 KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred eeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 5699999999999999999994 432 2345999999999887 89999999999999754 678899987
No 76
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.50 E-value=9.1e-14 Score=129.40 Aligned_cols=102 Identities=29% Similarity=0.532 Sum_probs=87.2
Q ss_pred ccEEEEEEEEeecCCCCC-CcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
.+.|.|+|++|++|+.++ ..+. +||||+|.+..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~ 50 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKR------------------------------------------SNPYVKVYLLPDKSK 50 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCC------------------------------------------CCcEEEEEEecCCCc
Confidence 478999999999999876 3333 89999999832
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
....+|+++.++.+|+|||+|.|.+... ...|.|+|||++.++ +++||.+.++|.++..+...+.||+|
T Consensus 51 ~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 51 QSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 1457999999999999999999998763 346999999999887 89999999999999877788899986
No 77
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.50 E-value=1.2e-13 Score=128.97 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=84.2
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (767)
.+.|.|+|++|++|+.++..+. +||||+|.+.+ .
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 52 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEK 52 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCcc
Confidence 3789999999999998876554 89999999954 3
Q ss_pred eeeeeccccCCCCCeeeceEEEeecC----CCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
.+.+|+++++|.+|+|||+|.|.+.. ....|.|+|||++.++ +++||.+.++|.+.. ......||+|
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 45799999999999999999998644 2356999999999987 899999999999843 2334689987
No 78
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.50 E-value=7.3e-14 Score=159.72 Aligned_cols=147 Identities=18% Similarity=0.129 Sum_probs=112.0
Q ss_pred cCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCc
Q 004222 232 LDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTS 311 (767)
Q Consensus 232 ~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs 311 (767)
+.+|+....+.....++++|.+||++|+|++++|.|+ ..+.++|+.||+|||+||||+ +....
T Consensus 308 ~~sgP~~~~~~~~~~~~~~I~~A~~~I~I~tpYfip~----------------~~i~~aL~~Aa~rGV~Vril~-p~~~d 370 (483)
T PRK01642 308 IASGPGDPEETIHQFLLTAIYSARERLWITTPYFVPD----------------EDLLAALKTAALRGVDVRIII-PSKND 370 (483)
T ss_pred EeCCCCChhhHHHHHHHHHHHHhccEEEEEcCCcCCC----------------HHHHHHHHHHHHcCCEEEEEe-CCCCC
Confidence 3444544446678899999999999999999888875 799999999999999999998 65422
Q ss_pred cCccccccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccc
Q 004222 312 HDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGI 391 (767)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~ 391 (767)
.. .+......+.+.|.++||+++.+... ..|.|++|||++ ++++||.
T Consensus 371 ~~--------~~~~~~~~~~~~L~~~Gv~I~~y~~~-----------------~~HaK~~ivD~~--------~~~vGS~ 417 (483)
T PRK01642 371 SL--------LVFWASRAFFTELLEAGVKIYRYEGG-----------------LLHTKSVLVDDE--------LALVGTV 417 (483)
T ss_pred cH--------HHHHHHHHHHHHHHHcCCEEEEeCCC-----------------ceEeEEEEECCC--------EEEeeCC
Confidence 11 11112345567788899999865221 189999999999 9999999
Q ss_pred cCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHHhhhc
Q 004222 392 DLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (767)
Q Consensus 392 Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp-av~dl~~~F~~~W~~~~ 460 (767)
|++...+ ..-.++.+.+.++ .+.++.+.|.++|..+.
T Consensus 418 N~d~rS~--------------------------------~~N~E~~~~i~d~~~~~~l~~~f~~d~~~s~ 455 (483)
T PRK01642 418 NLDMRSF--------------------------------WLNFEITLVIDDTGFAADLAAMQEDYFARSR 455 (483)
T ss_pred cCCHhHH--------------------------------hhhhcceEEEECHHHHHHHHHHHHHHHHhCe
Confidence 9987322 1124788899998 57999999999997654
No 79
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.49 E-value=1.8e-13 Score=127.91 Aligned_cols=102 Identities=30% Similarity=0.473 Sum_probs=87.6
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Ceee
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV 93 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~~ 93 (767)
.+.|.|+|++|++|+.++..+. +||||++.+. ....
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 52 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHK 52 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcc
Confidence 4689999999999998775554 8999999993 3445
Q ss_pred eeeccccCCCCCeeeceEEEeecCC----CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
.+|++++++.+|+|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+...+.|++|
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 7999999999999999999984321 245999999999887 89999999999999988889999998
No 80
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.49 E-value=2.2e-13 Score=124.58 Aligned_cols=101 Identities=21% Similarity=0.386 Sum_probs=86.4
Q ss_pred CCCCCCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCCC-ceEEEEEEEcCCCCCceeEEEEccccccc-CCcee
Q 004222 76 KIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIA-TGELI 153 (767)
Q Consensus 76 ~~~~~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~-~~~~~ 153 (767)
.++.+||||.|.+++....+|+++.++.||+|||.|.|.+.+.. ..|.|.|+|++.+++++||.+.++|.++. .+...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~ 88 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG 88 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence 34558999999998877789999999999999999999998754 55999999999888999999999999985 34456
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEEEec
Q 004222 154 SRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (767)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~y~p~ 182 (767)
..|++|.. ...|+|++++.|.|+
T Consensus 89 ~~w~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 89 QQWFPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred ceeEECCC------CCCCEEEEEEEEecC
Confidence 79999942 247999999999985
No 81
>PRK13912 nuclease NucT; Provisional
Probab=99.48 E-value=5.1e-14 Score=139.65 Aligned_cols=128 Identities=20% Similarity=0.253 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCch
Q 004222 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (767)
Q Consensus 560 ~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~ 639 (767)
..+...++++|++|+++|+|+. |+++ ...+..+|.+|++ |||+|+||++...+...+
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~-----------------~~~i~~aL~~Aa~--RGV~VrIlld~~~~~~~~--- 88 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFT-----------------HKDIAKALKSAAK--RGVKISIIYDYESNHNND--- 88 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEc-----------------hHHHHHHHHHHHH--CCCEEEEEEeCccccCcc---
Confidence 4667899999999999999986 5542 1356677777765 559999999964321111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-cccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEE
Q 004222 640 VQEILFWQSQTMQMMYSVVAQELRE-MQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (767)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~L~~-~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (767)
. .. ...|.+ .++++ + .+.- .. . .......++|+|+|||
T Consensus 89 -~-------~~--------~~~l~~~~~~~~----~--~~~~-~~--------------~----~~~~~~~~~H~K~~vi 127 (177)
T PRK13912 89 -Q-------ST--------IGYLDKYPNIKV----C--LLKG-LK--------------A----KNGKYYGIMHQKVAII 127 (177)
T ss_pred -h-------hH--------HHHHHhCCCceE----E--EecC-cc--------------c----cCcccccccceeEEEE
Confidence 0 00 011111 13322 0 1100 00 0 0001135799999999
Q ss_pred eeeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 719 DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 719 Dd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
|++++++||+||+.+|+.. |.|+++++.||+++
T Consensus 128 D~~~~~iGS~N~t~~s~~~--N~E~~lii~d~~~~ 160 (177)
T PRK13912 128 DDKIVVLGSANWSKNAFEN--NYEVLLITDDTETI 160 (177)
T ss_pred cCCEEEEeCCCCChhHhcc--CCceEEEECCHHHH
Confidence 9999999999999999984 59999999999886
No 82
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.48 E-value=2e-13 Score=131.19 Aligned_cols=116 Identities=30% Similarity=0.405 Sum_probs=86.1
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (767)
.|.|+|++|++||.+|..+. .+.+. ..++ .....+||||+|.+.+.. .||+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~--~~~~------------------------~~~~~~DPYV~V~~~g~~-~kT~ 51 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKK--AFLG------------------------EKKELVDPYVEVSFAGQK-VKTS 51 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--cccee--cccc------------------------CCCCCcCcEEEEEECCEe-eecc
Confidence 37899999999999885431 00000 0011 112238999999998876 4999
Q ss_pred cccCCCCCeeeceEEEeecCC--CceEEEEEEEcCCCC-CceeEEEEcccccccCCce-------eEEEEEccCC
Q 004222 98 VLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-------ISRWYDIIAP 162 (767)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~-------~~~w~~l~~~ 162 (767)
+++++.||+|||+|.|++..+ ...|.|+|||+|..+ +++||++.+++.++...+. ...|+.|...
T Consensus 52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999999999999996543 456999999999986 9999999999999875331 2467776443
No 83
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.47 E-value=3.5e-14 Score=134.45 Aligned_cols=110 Identities=23% Similarity=0.364 Sum_probs=89.5
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
..+.|.|+|++|++|+.++.... ..+||||+|.+..
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~l~~~~~k 52 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVTLKHQNAK 52 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEEEEcCCcc
Confidence 35889999999999998874211 1289999999843
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~ 166 (767)
..+.||++++++.||+|||.|.|.++.. ...|.|+|||.|.++ +++||.+.+++.. .|+..++|..++...+++
T Consensus 53 ~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~ 130 (138)
T cd08407 53 LKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQ 130 (138)
T ss_pred cceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCc
Confidence 2356999999999999999999998864 345999999999998 8999999999974 577778898887665544
No 84
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.46 E-value=3.4e-13 Score=125.59 Aligned_cols=102 Identities=25% Similarity=0.448 Sum_probs=87.8
Q ss_pred ccEEEEEEEEeecCCCCC-CcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004222 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (767)
.+.|.|+|++|++|+.++ ..+. +||||++.+. ...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~ 50 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDERR 50 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCCC
Confidence 468999999999999876 3333 8999999983 334
Q ss_pred eeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
..+|++++++.+|+|||.|.|.+... ...|.|+|||.+..+ +++||++.++|+++........|++|
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 57999999999999999999998653 346999999999887 89999999999999988888899998
No 85
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.2e-13 Score=149.83 Aligned_cols=126 Identities=27% Similarity=0.396 Sum_probs=105.4
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (767)
-...|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~------------------------------------------sdpyVK~~llPdk~~ 202 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGT------------------------------------------SDPYVKVYLLPDKKG 202 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCC------------------------------------------CCCeeEEEEcCCCCC
Confidence 34579999999999999883332 8999999993 345
Q ss_pred eeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCC
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~ 168 (767)
+.+|++.++|+||+|||+|.|.+... ...|.++|||.|+|+ +++||.+.++|..+........|.++.........
T Consensus 203 k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~ 282 (421)
T KOG1028|consen 203 KFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEE 282 (421)
T ss_pred cceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCccc
Confidence 67999999999999999999997764 355999999999998 99999999999999876668889999654333333
Q ss_pred CCceEEEEEEEEec
Q 004222 169 PGASIQLELKFTPC 182 (767)
Q Consensus 169 ~~g~i~l~l~y~p~ 182 (767)
..|+|+++++|.|.
T Consensus 283 ~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 283 LAGELLLSLCYLPT 296 (421)
T ss_pred ccceEEEEEEeecC
Confidence 44899999999998
No 86
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.46 E-value=1.4e-13 Score=128.77 Aligned_cols=109 Identities=20% Similarity=0.351 Sum_probs=86.2
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----C
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~ 90 (767)
..|.|+|.|++|++|++++.... .||||+|++- .
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~------------------------------------------~dpYVKV~L~~~~k~ 49 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLT------------------------------------------LSFFVKVGMFSTGGL 49 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCC------------------------------------------CCcEEEEEEEECCCc
Confidence 45789999999999997643222 7999999982 2
Q ss_pred eeeeeeccccCCC-CCeeeceEEEeecCCCce--EEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCC
Q 004222 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPLSN--LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (767)
Q Consensus 91 ~~~~~T~~~~~~~-~P~w~e~~~~~~~~~~~~--l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~ 166 (767)
..+.||+++++|. +|+|||+|.|+++.+... |.|+|+|++..+ +++||.+.++.+.. .++..++|.+++...+++
T Consensus 50 ~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ 128 (135)
T cd08692 50 LYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKV 128 (135)
T ss_pred ceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCe
Confidence 3457999999995 699999999999876433 888999999887 89999999999763 355678898887654443
No 87
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.45 E-value=4.6e-13 Score=125.02 Aligned_cols=100 Identities=22% Similarity=0.389 Sum_probs=85.8
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Ceeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATVA 94 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~~~ 94 (767)
+.|.|+|++|++|+.++..+. +||||++.+. .....
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~llp~~~~~~ 53 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLLPSKKQRA 53 (124)
T ss_pred CEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEccCCccee
Confidence 689999999999998875443 8999998873 23457
Q ss_pred eeccccCCCCCeeeceEEEe-ecC---CCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 95 RTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
||+++++ .||+|||+|.|+ +.. ....|.|+|+|++.++ +++||.+.|+|.++..+.....|++|
T Consensus 54 kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 54 KTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 9999888 999999999998 554 2456999999999988 99999999999999988889999998
No 88
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.45 E-value=4.3e-13 Score=125.18 Aligned_cols=101 Identities=26% Similarity=0.520 Sum_probs=88.5
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
|.|+|+|++|++|++.+..+. +||||+|.+.+.. .+|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T 37 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS 37 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence 689999999999998776554 8999999997754 588
Q ss_pred ccccC-CCCCeeeceEEEeecCC----CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEcc
Q 004222 97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (767)
Q Consensus 97 ~~~~~-~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~ 160 (767)
++..+ +.+|+|||.|.|.+..+ ...|.|+|||.+.++ +++||.+.+++.++..+.....|++|.
T Consensus 38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 88875 99999999999999887 456999999999886 899999999999998777788999983
No 89
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.45 E-value=1.1e-13 Score=131.17 Aligned_cols=107 Identities=23% Similarity=0.386 Sum_probs=87.1
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--e--
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-- 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~-- 91 (767)
.+.|.|+|++|++|+.++..+. +||||+|.+.. .
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~~~~~~~ 51 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLLQDGRKI 51 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCccc
Confidence 4689999999999998775554 89999999932 2
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~ 166 (767)
...||+++++|.||+|||+|.|.++.. ...|+|+|+|+|.++ +++||.+.|+.. ..|+..++|..++...+++
T Consensus 52 ~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 52 SKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKP 128 (136)
T ss_pred cccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCe
Confidence 245899999999999999999998763 355999999999887 899999999765 3566677888887665544
No 90
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.44 E-value=6.1e-13 Score=121.67 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=70.0
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCCC-----ceEEEEEEEcCCCC-CceeEEEEcccccccCC---
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--- 150 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-----~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~--- 150 (767)
+||||++.+.+++ .+|++++++.+|.|||+|.|.+..+. ..|.|+|||.+.++ +++||++.++|+++..+
T Consensus 21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~ 99 (111)
T cd04011 21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99 (111)
T ss_pred CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence 8999999999765 59999999999999999999976542 46999999999887 89999999999999644
Q ss_pred ceeEEEEEccC
Q 004222 151 ELISRWYDIIA 161 (767)
Q Consensus 151 ~~~~~w~~l~~ 161 (767)
.....|++|.+
T Consensus 100 ~~~~~w~~L~~ 110 (111)
T cd04011 100 AFLRKWLLLTD 110 (111)
T ss_pred cceEEEEEeeC
Confidence 45788999854
No 91
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.44 E-value=1.4e-13 Score=130.06 Aligned_cols=107 Identities=29% Similarity=0.443 Sum_probs=89.2
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (767)
.+.|.|+|++|++|+.++..+. +||||+|.+.. .
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~~ 49 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGKK 49 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCcc
Confidence 4889999999999998876554 89999999842 2
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~ 166 (767)
.+.+|+++.++.+|+|||+|.|.+..+ ...|.|+|||.+..+ +++||.+.+++.. .++....|++++...+.+
T Consensus 50 ~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 50 SKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred CCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 457999999999999999999998764 346999999999887 8999999999985 456677899987665543
No 92
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.43 E-value=4.8e-13 Score=130.69 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=85.1
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----C
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~ 90 (767)
..|.|.|+|++|++|+..+..+. +||||+|.+. .
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~ 62 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK 62 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45899999999999998876554 8999999883 2
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC----CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
..+.||+++++|.||.|||.|.|.+... ...|+|+|||++.++ +++||.+.+++.++........|+++
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 3467999999999999999999985432 246999999999998 99999999999998754455666665
No 93
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.43 E-value=8.2e-13 Score=126.34 Aligned_cols=92 Identities=30% Similarity=0.630 Sum_probs=82.1
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
|.|+|+|++|++|+..+. +. +||||++.++++. .+|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------------------sDPYV~v~~g~~~-~kT 37 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------------------SDPYVVLTLGNQK-VKT 37 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------------------cCcEEEEEECCEE-EEe
Confidence 789999999999987765 33 8999999998755 799
Q ss_pred ccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCce
Q 004222 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (767)
++++++.||+|||+|.|.+..+...|.|+|||++.++ +++||.+.+++.++.....
T Consensus 38 ~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 38 RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred eeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhh
Confidence 9999999999999999999988778999999999997 8999999999999875433
No 94
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.43 E-value=6.7e-13 Score=126.09 Aligned_cols=100 Identities=21% Similarity=0.417 Sum_probs=86.1
Q ss_pred EEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---eeeee
Q 004222 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---ATVAR 95 (767)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~~~ 95 (767)
|.|+|++|++|+.+ ..+. +||||+|.+.. ..+.+
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------------------~dPyv~v~~~~~~~~~~~r 37 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------------------CDPFARVTLNYSSKTDTKR 37 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------------------CCcEEEEEEecCCcCCeec
Confidence 57999999999876 4443 89999999973 45679
Q ss_pred eccccCCCCCeeeceEEEeecCC----------------CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEE
Q 004222 96 TRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (767)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~----------------~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~ 158 (767)
|+++.++.+|.|||+|.|.+... ...|+|+|||++.++ +++||.+.+++.++........|++
T Consensus 38 T~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~ 117 (137)
T cd08675 38 TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF 117 (137)
T ss_pred cceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence 99999999999999999998764 345999999999986 9999999999999987777889999
Q ss_pred ccC
Q 004222 159 IIA 161 (767)
Q Consensus 159 l~~ 161 (767)
|..
T Consensus 118 L~~ 120 (137)
T cd08675 118 LQP 120 (137)
T ss_pred cCC
Confidence 943
No 95
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.42 E-value=6.5e-13 Score=127.87 Aligned_cols=100 Identities=25% Similarity=0.445 Sum_probs=85.6
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe--
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA-- 91 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-- 91 (767)
...+.|.|+|++|++|+++|..+. +||||+|.+...
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~ 62 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPASR 62 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEccccc
Confidence 345789999999999999887665 999999998531
Q ss_pred --------------------------eeeeeccccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCCCceeEEEEccc
Q 004222 92 --------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPA 144 (767)
Q Consensus 92 --------------------------~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l 144 (767)
.+.+|+++.+|.+|.|||+|.|.+... ...|.|+|||.+ +++||.+.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l 139 (153)
T cd08676 63 ERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPL 139 (153)
T ss_pred ccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEH
Confidence 246899999999999999999998764 456999999998 89999999999
Q ss_pred ccccCCceeEEEEEc
Q 004222 145 HTIATGELISRWYDI 159 (767)
Q Consensus 145 ~~~~~~~~~~~w~~l 159 (767)
+++. +.....||+|
T Consensus 140 ~~l~-~~~~d~W~~L 153 (153)
T cd08676 140 KDLP-SCGLDSWFKL 153 (153)
T ss_pred HHhC-CCCCCCeEeC
Confidence 9998 4457899986
No 96
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.42 E-value=8.1e-13 Score=123.35 Aligned_cols=91 Identities=26% Similarity=0.383 Sum_probs=77.2
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (767)
-.|.|+|+|++|++|+. +..+. +||||+|.+.+. +.
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVkV~~~~~-~~ 61 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVKVFFGGQ-EK 61 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEEEEECCc-cc
Confidence 34899999999999973 44443 899999999876 67
Q ss_pred eeccccCCCCCeeeceEEEeecC--CCceEEEEEEEcCCCC-CceeEEEEcccccccC
Q 004222 95 RTRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (767)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~--~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~ 149 (767)
||++++++.||+|||+|.|.... ....|+|+|||++.++ +++||.+.++|.....
T Consensus 62 kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 62 RTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred cCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 99999999999999999997433 3556999999999996 9999999999996663
No 97
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.42 E-value=2.6e-13 Score=128.80 Aligned_cols=106 Identities=27% Similarity=0.465 Sum_probs=87.8
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--e--
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-- 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~-- 91 (767)
.+.|.|+|++|++|+.++..+. +||||+|.+.. .
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~ 51 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKRI 51 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCcee
Confidence 5689999999999998876654 89999999832 2
Q ss_pred eeeeeccccCCCCCeeeceEEEeecC---CCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~ 165 (767)
...||++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||.+.+++.. .+.....|+++....++
T Consensus 52 ~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~ 127 (136)
T cd08404 52 SKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRR 127 (136)
T ss_pred eeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCC
Confidence 24689999999999999999999875 3345999999999997 8999999999998 35667789988655443
No 98
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.41 E-value=1.8e-13 Score=129.90 Aligned_cols=108 Identities=29% Similarity=0.498 Sum_probs=88.6
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~-- 90 (767)
..|.|.|+|++|++|+.++..+. +||||+|.+. +
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 50 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEEEEEECCcc
Confidence 45889999999999998876554 8999999984 2
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~ 166 (767)
....+|++++++.||+|||+|.|.+.... ..|.|+|||.+.++ +++||.+.|++.. .+...+.|++++...+++
T Consensus 51 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 51 LKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRP 128 (136)
T ss_pred cceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCe
Confidence 23568999999999999999999987542 36999999999987 8999999999975 356677898887654443
No 99
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.40 E-value=3.3e-12 Score=119.42 Aligned_cols=97 Identities=25% Similarity=0.420 Sum_probs=77.3
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCc---e--e
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE---L--I 153 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~---~--~ 153 (767)
+||||+|.+++....+|+++.++.+|+|||.|.|.+.. ...|.|+|||++..+ +++||.+.++|.++.... . .
T Consensus 22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 100 (125)
T cd04021 22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV 100 (125)
T ss_pred CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence 89999999987656899999999999999999999864 457999999999986 899999999999987422 2 3
Q ss_pred EEEEEccCCCCCCCCCCceEEEEE
Q 004222 154 SRWYDIIAPSGSPPKPGASIQLEL 177 (767)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l 177 (767)
..|+++..++.......|+|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 101 KLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEccCCCcceeeeeEEEEe
Confidence 458888533310224578888765
No 100
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.39 E-value=1.2e-12 Score=145.93 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=105.0
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
..+...++++|.+|+++|+|++.+|.|+ ..|.++|+.|++|||+|+||+ ++.+...
T Consensus 205 ~~i~~~~~~~i~~A~~~I~I~tpYf~p~----------------~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~------- 260 (411)
T PRK11263 205 DDIERHYLKALRQARREVIIANAYFFPG----------------YRLLRALRNAARRGVRVRLIL-QGEPDMP------- 260 (411)
T ss_pred HHHHHHHHHHHHHhceEEEEEecCcCCC----------------HHHHHHHHHHHHCCCEEEEEe-CCCCCcH-------
Confidence 4667789999999999999999888875 689999999999999999998 6543321
Q ss_pred cccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCC
Q 004222 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (767)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (767)
++......+...|.++||+++.+.. ...|.|++|||++ +++|||.|++. |...
T Consensus 261 -~~~~a~~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~~--------~~~vGS~Nld~-rS~~ 313 (411)
T PRK11263 261 -IVRVGARLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDDH--------WATVGSSNLDP-LSLS 313 (411)
T ss_pred -HHHHHHHHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECCC--------EEEEeCCcCCH-HHhh
Confidence 1111223456778889999875421 1289999999999 99999999988 4421
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHHh
Q 004222 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWR 457 (767)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpa-v~dl~~~F~~~W~ 457 (767)
...++.+.|.+|. +..|.+.|.+++.
T Consensus 314 -------------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 314 -------------------------------LNLEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred -------------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 1236788888985 5888899999986
No 101
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.39 E-value=9.2e-13 Score=130.43 Aligned_cols=131 Identities=26% Similarity=0.382 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004222 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (767)
Q Consensus 559 ~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~ 638 (767)
...+...++++|.+|+++|+|+++||.+... .. ...+...|.+++++ ||+|+||++.......
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~~---~~---------~~~l~~~L~~a~~r--Gv~V~il~~~~~~~~~--- 81 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLIT---EY---------GPVILDALLAAARR--GVKVRILVDEWSNTDL--- 81 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEeccccc---cc---------chHHHHHHHHHHHC--CCEEEEEEcccccCCc---
Confidence 3678899999999999999999999985210 00 23566777788765 5999999996432110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHc---ccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeE
Q 004222 639 TVQEILFWQSQTMQMMYSVVAQELREM---QVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (767)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~L~~~---Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~ 715 (767)
..... ....|.+. |+++ +.+.... .....+|+|+
T Consensus 82 -------~~~~~-------~~~~l~~~~~~~i~~--------~~~~~~~---------------------~~~~~~H~K~ 118 (176)
T cd00138 82 -------KISSA-------YLDSLRALLDIGVRV--------FLIRTDK---------------------TYGGVLHTKL 118 (176)
T ss_pred -------hHHHH-------HHHHHHHhhcCceEE--------EEEcCCc---------------------ccccceeeeE
Confidence 00111 13444443 4543 2221100 0125899999
Q ss_pred EEEeeeEeeeccCCcCCcCCCCCCCccceeeecCCc
Q 004222 716 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 751 (767)
Q Consensus 716 ~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~ 751 (767)
||||++.+++||+||+.+++. .|.|+++++.+|+
T Consensus 119 ~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 119 VIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred EEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 999999999999999999998 4699999999997
No 102
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.39 E-value=2.3e-12 Score=120.17 Aligned_cols=124 Identities=20% Similarity=0.382 Sum_probs=87.2
Q ss_pred HHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccc-c
Q 004222 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA-T 325 (767)
Q Consensus 247 l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~-~ 325 (767)
|.++|++|+++|+|++|.|.+ ..+.++|..++++||+|+|++ +...... +... .
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~-----------------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~-------~~~~~~ 55 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITD-----------------PDIIKALLDAAKRGVKVRIIV-DSNQDDS-------EAINLA 55 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-S-----------------CHHHHHHHHHHHTT-EEEEEE-ECGGGHH-------CCCSHH
T ss_pred CHHHHhccCCEEEEEEEecCc-----------------HHHHHHHHHHHHCCCeEEEEE-CCCcccc-------chhhhH
Confidence 578999999999999998733 688999999999999999998 6532100 0000 0
Q ss_pred CcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCCCCCCC
Q 004222 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405 (767)
Q Consensus 326 ~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~ 405 (767)
......+.+...|++++ . +.|.|++|||++ ++++||.|++...|
T Consensus 56 ~~~~~~~~~~~~~i~v~-----~----------------~~H~K~~i~d~~--------~~iiGS~N~t~~~~------- 99 (126)
T PF13091_consen 56 SLKELRELLKNAGIEVR-----N----------------RLHAKFYIIDDK--------VAIIGSANLTSSSF------- 99 (126)
T ss_dssp HHHHHHHHHHHTTHCEE-----S-----------------B--EEEEETTT--------EEEEES--CSCCCS-------
T ss_pred HHHHHHhhhccceEEEe-----c----------------CCCcceEEecCc--------cEEEcCCCCCcchh-------
Confidence 01233444577888876 1 289999999998 99999999998444
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHH
Q 004222 406 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW 456 (767)
Q Consensus 406 ~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpa-v~dl~~~F~~~W 456 (767)
...++..+.+++|. +..+.+.|.++|
T Consensus 100 -------------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 -------------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -------------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -------------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 23469999999995 899999999999
No 103
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.39 E-value=4.7e-13 Score=127.04 Aligned_cols=108 Identities=29% Similarity=0.469 Sum_probs=88.1
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~-- 90 (767)
..+.|.|+|++|++|+.++..+. +||||+|.+. +
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~ 50 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCc
Confidence 34789999999999998776554 8999999982 2
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~ 166 (767)
....+|++++++.+|+|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.+. +...+.|++++...+.+
T Consensus 51 ~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 51 VEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred cccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 2346899999999999999999997642 346999999999987 89999999999875 55567788887665544
No 104
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.39 E-value=5.2e-12 Score=118.26 Aligned_cols=116 Identities=29% Similarity=0.525 Sum_probs=93.3
Q ss_pred EEEEEEEEeecCCCCC--CcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC-----C
Q 004222 18 DLDLKIIRARRLPNMD--MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q 90 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-----~ 90 (767)
.|+|+|++|++|+.++ ..+. .||||++++. +
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 40 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI------------------------------------------VDPYVEVEIHGLPADD 40 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc------------------------------------------cCCEEEEEEEeCCCCC
Confidence 5899999999999766 2333 8999999993 2
Q ss_pred eeeeeeccccCCC-CCeeeceEEEeecCCC-ceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCCCCCC
Q 004222 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (767)
Q Consensus 91 ~~~~~T~~~~~~~-~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~ 168 (767)
....+|+++.++. +|.|||+|.|.+..+. ..|.|+|+|++..++++||.+.++++++..|. .|++|....+.+ .
T Consensus 41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~ 116 (128)
T cd00275 41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-L 116 (128)
T ss_pred CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-C
Confidence 3457999988765 9999999999988655 35999999999888899999999999997553 678887666653 3
Q ss_pred CCceEEEEEEE
Q 004222 169 PGASIQLELKF 179 (767)
Q Consensus 169 ~~g~i~l~l~y 179 (767)
..|.|.+.+++
T Consensus 117 ~~~~l~v~~~~ 127 (128)
T cd00275 117 ELSTLFVHIDI 127 (128)
T ss_pred cceeEEEEEEE
Confidence 56888888764
No 105
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.39 E-value=2.4e-12 Score=121.33 Aligned_cols=108 Identities=26% Similarity=0.439 Sum_probs=91.1
Q ss_pred eEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-
Q 004222 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (767)
Q Consensus 12 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (767)
+.+-.+.|.|+|++|++|+..+..+. +||||+|.+..
T Consensus 8 ~~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~~~ 45 (131)
T cd04026 8 ISVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPD 45 (131)
T ss_pred EEECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEEcC
Confidence 45667899999999999997665443 89999999952
Q ss_pred ---eeeeeeccccCCCCCeeeceEEEeecCC--CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCC
Q 004222 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (767)
Q Consensus 91 ---~~~~~T~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~ 162 (767)
...++|+++.++.+|.|||+|.|.+... ...|.|+|||.+..+ +++||.+.+++.++... ..+.|++|...
T Consensus 46 ~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 46 PKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 3567999999999999999999998764 346999999999886 89999999999999854 67889999654
No 106
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.39 E-value=3.8e-13 Score=127.09 Aligned_cols=106 Identities=32% Similarity=0.547 Sum_probs=89.4
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----ee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~~ 92 (767)
+.|.|+|++|++|+..+..+. +||||++.+.+ ..
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 51 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKLK 51 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEee
Confidence 789999999999998775444 89999999853 23
Q ss_pred eeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCC
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~ 166 (767)
..+|+++.++.+|.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++++ .+...+.|++|+...+++
T Consensus 52 ~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 52 KKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP 127 (134)
T ss_pred eecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence 56999999999999999999998765 356999999999876 8999999999998 577788999997665543
No 107
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.38 E-value=4.3e-13 Score=127.01 Aligned_cols=108 Identities=33% Similarity=0.507 Sum_probs=88.2
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~-- 90 (767)
..|.|+|+|++|++|+.++..+. +||||+|.+. +
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~~~~~ 49 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMCEGRR 49 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCcc
Confidence 45889999999999998886655 8999999983 2
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~ 166 (767)
....+|+++.++.+|+|||+|.|.+.... ..|.|+|||++.++ +++||.+.+++. ..+...+.|++++...+++
T Consensus 50 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~ 127 (134)
T cd08403 50 LKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKP 127 (134)
T ss_pred cceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCe
Confidence 23569999999999999999999976532 35999999999998 999999999987 3355567898887665544
No 108
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.38 E-value=6.2e-12 Score=119.07 Aligned_cols=115 Identities=23% Similarity=0.379 Sum_probs=90.4
Q ss_pred EEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--e----
Q 004222 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A---- 91 (767)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~---- 91 (767)
.+.|++++|++|+ ++..+. +||||++++.. .
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~------------------------------------------~DPyvki~~~~~~~~~~~ 38 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFN------------------------------------------PDPYVKISIQPGKRHIFP 38 (137)
T ss_pred EEEEEEEEeCCCC-CccCCC------------------------------------------CCceEEEEEECCCccccc
Confidence 3689999999998 666555 99999999942 1
Q ss_pred ------eeeeeccccCCCCCee-eceEEEeecCCCceEEEEEEEcCCCC----CceeEEEEcccccccCC---ceeEEEE
Q 004222 92 ------TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIATG---ELISRWY 157 (767)
Q Consensus 92 ------~~~~T~~~~~~~~P~w-~e~~~~~~~~~~~~l~~~v~d~~~~~----~~~iG~~~~~l~~~~~~---~~~~~w~ 157 (767)
...+|++++++.||+| ||+|.|.+.. ...|.|+|||++..+ +++||.+.+++.++..+ .....|+
T Consensus 39 ~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~ 117 (137)
T cd08691 39 ALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSY 117 (137)
T ss_pred ccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEE
Confidence 2579999999999999 9999999864 457999999976542 69999999999999743 3466899
Q ss_pred EccCCCCCCCCCCceEEEEE
Q 004222 158 DIIAPSGSPPKPGASIQLEL 177 (767)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l 177 (767)
++. +.+......|+|.+.+
T Consensus 118 ~l~-k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 118 TLG-RRTPTDHVSGQLTFRF 136 (137)
T ss_pred ECC-cCCCCCcEEEEEEEEe
Confidence 983 4333445678887765
No 109
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.38 E-value=2.4e-13 Score=143.69 Aligned_cols=106 Identities=26% Similarity=0.447 Sum_probs=93.1
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP---- 89 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---- 89 (767)
+-...|+|+|.+|++|-+||..+. +||||++.+-
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD~~ 214 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDPK 214 (683)
T ss_pred ecCceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccCCc
Confidence 345579999999999999999987 9999999992
Q ss_pred CeeeeeeccccCCCCCeeeceEEEeecCCCc--eEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCC
Q 004222 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPLS--NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (767)
Q Consensus 90 ~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~--~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~ 162 (767)
+..+++|++++.|+||+|||+|+|.+.+... .|.|+|||||+.+ +||+|...+.+++|. ....+.||.|++.
T Consensus 215 ~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 215 NESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQ 289 (683)
T ss_pred chhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhh
Confidence 3566899999999999999999999988653 4999999999998 999999999999988 4577899999754
No 110
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.37 E-value=2.7e-12 Score=121.35 Aligned_cols=91 Identities=30% Similarity=0.456 Sum_probs=79.2
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC------
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------ 90 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~------ 90 (767)
+.|+|+|++|++|+.++..+. +||||+|.+..
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~~ 53 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFPD 53 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCcc
Confidence 679999999999998776554 89999999852
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC-----CceEEEEEEEcCCCC-CceeEEEEcccccccC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~-----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~ 149 (767)
....+|+++++|.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.++|.++..
T Consensus 54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 3467999999999999999999998752 346999999999998 9999999999999884
No 111
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.36 E-value=9.7e-13 Score=125.04 Aligned_cols=106 Identities=21% Similarity=0.430 Sum_probs=87.3
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--e--
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-- 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~-- 91 (767)
.+.|.|+|++|++|+..+ .+. +||||+|.+.. .
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~~ 50 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKVV 50 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEEe
Confidence 478999999999999877 443 89999999842 1
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~ 164 (767)
...+|++++++.||+|||+|.|.+... ...|.|+|+|.+..+ +++||.+.|+......+...++|..++...+
T Consensus 51 ~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~ 127 (137)
T cd08409 51 KTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPK 127 (137)
T ss_pred eeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCC
Confidence 345999999999999999999998653 245999999999877 8999999999877777777888888865443
No 112
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.36 E-value=6.3e-13 Score=126.03 Aligned_cols=109 Identities=23% Similarity=0.423 Sum_probs=85.9
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEE-CC---
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV-PQ--- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~-~~--- 90 (767)
..|.|.|+|++|++|+.++..+. +||||++.+ ++
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~~ 49 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLKL 49 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 44889999999999998886655 999999997 22
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~ 166 (767)
....+|+++++|.||+|||+|.|.+... ...|.|+|||++..+ +++||.+.|...... +...+.|+.|+...+++
T Consensus 50 ~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 50 IKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTA 128 (135)
T ss_pred cceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCE
Confidence 1346999999999999999999998653 235999999999887 999999886653322 23457798887766544
No 113
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.34 E-value=3.6e-12 Score=118.98 Aligned_cols=117 Identities=24% Similarity=0.349 Sum_probs=89.0
Q ss_pred EEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCee-eeeec
Q 004222 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VARTR 97 (767)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~-~~~T~ 97 (767)
|+|.|++|++|+.++..+. +||||++.+.+.. ..+|+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT~ 39 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRDN 39 (124)
T ss_pred EEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeeccceee
Confidence 7899999999998886655 9999999997654 35888
Q ss_pred cccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004222 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (767)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l 175 (767)
++++|.+|+|||.|.|.+..+ ...|.|+|||++.++ +++||.+.+++.+... ..+|.....+...+ ..|.+++
T Consensus 40 ~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~---~~~~~~~~~~~~~~--~~~~~~~ 114 (124)
T cd04037 40 YIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF---SKHRATCGLPPTYE--ESGPNQW 114 (124)
T ss_pred EEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc---chHHHhccCCCccc--ccCceec
Confidence 999999999999999997654 346999999999986 9999999999987653 22343332222211 3566776
Q ss_pred EEEEEec
Q 004222 176 ELKFTPC 182 (767)
Q Consensus 176 ~l~y~p~ 182 (767)
+-.+.|.
T Consensus 115 ~~~~~~~ 121 (124)
T cd04037 115 RDSLKPS 121 (124)
T ss_pred CcccCcc
Confidence 6655543
No 114
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.34 E-value=1.3e-11 Score=112.56 Aligned_cols=66 Identities=33% Similarity=0.531 Sum_probs=56.2
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEc-------CCCC-CceeEEEEccccc
Q 004222 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAHT 146 (767)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~-------~~~~-~~~iG~~~~~l~~ 146 (767)
+||||+++++. ..++||+++.+|.||+|||+|.|++.. ...|.+.|||+ |..+ |+++|++.+.|+.
T Consensus 15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 89999999853 356899999999999999999999974 66899999998 4555 8999888887753
No 115
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.33 E-value=2.1e-12 Score=120.50 Aligned_cols=115 Identities=23% Similarity=0.343 Sum_probs=74.7
Q ss_pred HHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCchhHHHHH
Q 004222 566 YIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILF 645 (767)
Q Consensus 566 ~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~~~~~~~ 645 (767)
+.++|++|+++|+|++|||... .+...+..+.+ +||+|+||+..... +.....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~~--~gv~v~ii~~~~~~-~~~~~~------ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDAAK--RGVKVRIIVDSNQD-DSEAIN------ 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHHH--TT-EEEEEEECGGG-HHCCCS------
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHHH--CCCeEEEEECCCcc-ccchhh------
Confidence 4679999999999999999521 23455555544 55999999996221 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEEeeeEeee
Q 004222 646 WQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIM 725 (767)
Q Consensus 646 ~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~I 725 (767)
. . ....+.+.+...|+++ + .++|+|++|+|++++++
T Consensus 54 ~--~----~~~~~~~~~~~~~i~v--------~------------------------------~~~H~K~~i~d~~~~ii 89 (126)
T PF13091_consen 54 L--A----SLKELRELLKNAGIEV--------R------------------------------NRLHAKFYIIDDKVAII 89 (126)
T ss_dssp H--H----HHHHHHHHHHHTTHCE--------E------------------------------S-B--EEEEETTTEEEE
T ss_pred h--H----HHHHHHhhhccceEEE--------e------------------------------cCCCcceEEecCccEEE
Confidence 0 0 1112344457778764 1 27899999999999999
Q ss_pred ccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 726 GSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 726 GSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
||+||+.+|+. .|.|+++.+.+|+++
T Consensus 90 GS~N~t~~~~~--~n~E~~~~~~~~~~~ 115 (126)
T PF13091_consen 90 GSANLTSSSFR--RNYELGVIIDDPELV 115 (126)
T ss_dssp ES--CSCCCSC--TSEEEEEEEECHHHH
T ss_pred cCCCCCcchhc--CCcceEEEEECHHHH
Confidence 99999999997 569999999999754
No 116
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.33 E-value=7.5e-12 Score=116.14 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=69.5
Q ss_pred CCcEEEEEECCe------eeeeeccccCCCCCeeeceEEEeecC-CCceEEEEEEEcCC----CC-CceeEEEEcccccc
Q 004222 80 SDPYVTVVVPQA------TVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI 147 (767)
Q Consensus 80 ~dpyv~v~~~~~------~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~----~~-~~~iG~~~~~l~~~ 147 (767)
+||||+|.+... .+.+|++++++.||+|||+|.|.+.. ....|.|+|||++. .+ +++||.+.+++.++
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l 100 (120)
T cd04048 21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100 (120)
T ss_pred CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence 899999999553 35799999999999999999998653 34459999999997 55 89999999999999
Q ss_pred cCCceeEEEEEc
Q 004222 148 ATGELISRWYDI 159 (767)
Q Consensus 148 ~~~~~~~~w~~l 159 (767)
..++....|++|
T Consensus 101 ~~~~~~~~~~~l 112 (120)
T cd04048 101 VSSPGQKLTLPL 112 (120)
T ss_pred hcCCCcEEEEEc
Confidence 987778889998
No 117
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.33 E-value=1.4e-12 Score=124.05 Aligned_cols=106 Identities=19% Similarity=0.369 Sum_probs=85.1
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C-e-
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-A- 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~-~- 91 (767)
.+.|.|+|++|++|+.++..+. +||||++.+. . .
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~~~ 51 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDGQE 51 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCCcc
Confidence 4889999999999998876554 8999999993 1 1
Q ss_pred -eeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCC
Q 004222 92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (767)
Q Consensus 92 -~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~ 164 (767)
...||+++.++.||+|||+|.|++... ...|.|+|||.+.++ +++||.+.+++...- .+..++|+.++...+
T Consensus 52 ~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~ 128 (138)
T cd08408 52 ISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKG 128 (138)
T ss_pred eeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCC
Confidence 245999999999999999999998753 346999999999887 899999999887433 234467888765544
No 118
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.32 E-value=4.1e-12 Score=159.98 Aligned_cols=121 Identities=21% Similarity=0.439 Sum_probs=102.3
Q ss_pred EeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCee
Q 004222 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (767)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~ 92 (767)
.-+.|.|.|+|++|++|. +.++. +||||++.+++..
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~------------------------------------------sdPyv~l~~g~~~ 2011 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGN------------------------------------------TNAFCKLTLGNGP 2011 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCC------------------------------------------CCCeEEEEECCCC
Confidence 456799999999999997 32333 9999999999654
Q ss_pred eeeeccccCCCCCeeeceEEEeecCCC--ceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCCCCCCCC
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~ 170 (767)
..||++++++.||+|||.|+|.+..+. ..|.|+|||+|.|+++.+|.+.|++.++..+..+..||+|.. .++ ..
T Consensus 2012 ~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~---k~ 2087 (2102)
T PLN03200 2012 PRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ESN---KD 2087 (2102)
T ss_pred cccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-ccc---cC
Confidence 569999999999999999998877765 569999999999998899999999999999999999999953 232 24
Q ss_pred ce---EEEEEEEEe
Q 004222 171 AS---IQLELKFTP 181 (767)
Q Consensus 171 g~---i~l~l~y~p 181 (767)
|+ |.+++.|.+
T Consensus 2088 G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2088 GSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCcceEEEEEEecC
Confidence 66 999998865
No 119
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.32 E-value=1.3e-11 Score=115.01 Aligned_cols=101 Identities=29% Similarity=0.405 Sum_probs=83.2
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (767)
.+.|+|+|++|++|++.+..+. +||||++.+.. .
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~ 51 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASKA 51 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCCC
Confidence 3689999999999998775544 89999999831 3
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCC----CceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEE
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD 158 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~ 158 (767)
.+.+|+++.++.+|.|||.|.|..... ...|.|+|||.+.+++++||.+.+++.++..++..+.|+.
T Consensus 52 ~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 52 TKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 467999999999999999999963322 3469999999988888999999999999997776666654
No 120
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.30 E-value=5.6e-12 Score=140.81 Aligned_cols=128 Identities=26% Similarity=0.377 Sum_probs=112.4
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (767)
...|.|+|.+|++||+.+..+. .||||.|.++++.+.|
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~------------------------------------------~D~yC~v~lD~E~v~R 41 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGM------------------------------------------RDCYCTVNLDQEEVCR 41 (800)
T ss_pred ccceeEEEeecccCCCCCCCCC------------------------------------------cCcceEEeecchhhhh
Confidence 3568999999999999876665 8999999999999999
Q ss_pred eccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 004222 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (767)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~ 174 (767)
|.++.+|++|.|.|+|.|.++....-|.|.|||.| ++ |+.||++.|.-++|..-...+.|+.| .+-....+..|+|+
T Consensus 42 T~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L-~~VD~dsEVQG~v~ 119 (800)
T KOG2059|consen 42 TATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSL-QPVDPDSEVQGKVH 119 (800)
T ss_pred hhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceec-cccCCChhhceeEE
Confidence 99999999999999999999998888999999999 66 99999999999999866688899999 44333346899999
Q ss_pred EEEEEEecCCCCc
Q 004222 175 LELKFTPCDKNPL 187 (767)
Q Consensus 175 l~l~y~p~~~~p~ 187 (767)
|++.+.+...+..
T Consensus 120 l~l~~~e~~~~~~ 132 (800)
T KOG2059|consen 120 LELALTEAIQSSG 132 (800)
T ss_pred EEEEeccccCCCc
Confidence 9999998765443
No 121
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.14 E-value=2e-10 Score=104.79 Aligned_cols=69 Identities=33% Similarity=0.556 Sum_probs=58.8
Q ss_pred CCcEEEEEECCe-----eeeeeccccCCCCCeeeceEEEeecC-----CCceEEEEEEEcCCCC-CceeEEEEccccccc
Q 004222 80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (767)
Q Consensus 80 ~dpyv~v~~~~~-----~~~~T~~~~~~~~P~w~e~~~~~~~~-----~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (767)
+||||+|.+.+. .+.+|++++++.+|+|| +|.|++.. ....|.|+|||++.++ +++||.+.+++.++.
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 999999998432 46899999999999999 78887542 1456999999999997 899999999999998
Q ss_pred C
Q 004222 149 T 149 (767)
Q Consensus 149 ~ 149 (767)
.
T Consensus 100 ~ 100 (110)
T cd04047 100 K 100 (110)
T ss_pred c
Confidence 3
No 122
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.08 E-value=3e-10 Score=97.54 Aligned_cols=81 Identities=44% Similarity=0.762 Sum_probs=69.3
Q ss_pred EEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe--eeeee
Q 004222 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART 96 (767)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~--~~~~T 96 (767)
|+|+|++|++|+..+..+. .||||++.+.+. ...+|
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T 38 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT 38 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence 7899999999997665444 899999999763 34799
Q ss_pred ccccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCC-CceeEEEE
Q 004222 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAA 141 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~ 141 (767)
+++.++.+|.|+|.|.|.+..+ ...|.|+|||.+.++ +++||++.
T Consensus 39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 9999999999999999996554 445999999999998 99999874
No 123
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.9e-10 Score=124.02 Aligned_cols=121 Identities=25% Similarity=0.471 Sum_probs=98.5
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (767)
|...++++|+.|.+|...|-.|+ +||||++.++..+ .
T Consensus 293 wsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktk-r 329 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTK-R 329 (1283)
T ss_pred cceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccc-h
Confidence 55679999999999988776665 9999999998755 5
Q ss_pred eeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCC------------CCceeEEEEcccccccCCceeEEEEEccCC
Q 004222 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAP 162 (767)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~------------~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~ 162 (767)
+|+++...+||+|||.|.|.+.+....|++.|||+|.. +|||+|+..|.+.++. .++..||.|- .
T Consensus 330 rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls--gemdvwynle-k 406 (1283)
T KOG1011|consen 330 RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLE-K 406 (1283)
T ss_pred hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchh-h
Confidence 99999999999999999999999888899999998743 4899999999888776 3577899994 3
Q ss_pred CCCCCCCCceEEEEEEEEe
Q 004222 163 SGSPPKPGASIQLELKFTP 181 (767)
Q Consensus 163 ~~~~~~~~g~i~l~l~y~p 181 (767)
...+....|-|+|.+...-
T Consensus 407 rtdksavsgairlhisvei 425 (1283)
T KOG1011|consen 407 RTDKSAVSGAIRLHISVEI 425 (1283)
T ss_pred ccchhhccceEEEEEEEEE
Confidence 3333345677776665443
No 124
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.99 E-value=2.5e-09 Score=93.68 Aligned_cols=80 Identities=34% Similarity=0.646 Sum_probs=70.4
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecC-CCceEEEEEEEcCCCC-CceeEEEEccccccc-CCceeEEE
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW 156 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~-~~~~~~~w 156 (767)
.+|||.+.+.+....+|+++.++.+|.|++.|.|.+.. ....|.|+|++.+..+ +.+||.+.+++..+. .......|
T Consensus 20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~ 99 (102)
T cd00030 20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99 (102)
T ss_pred CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence 89999999987556799999999999999999999987 5567999999999887 899999999999998 66667778
Q ss_pred EEc
Q 004222 157 YDI 159 (767)
Q Consensus 157 ~~l 159 (767)
++|
T Consensus 100 ~~l 102 (102)
T cd00030 100 LPL 102 (102)
T ss_pred ecC
Confidence 764
No 125
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.99 E-value=1.6e-09 Score=117.96 Aligned_cols=169 Identities=24% Similarity=0.417 Sum_probs=127.4
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (767)
+.|.|.|+|..||.||-||..+. ..|.||+|.+.+.+ .
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~ 38 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F 38 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence 46889999999999999997665 28999999999866 6
Q ss_pred eeccccCCCCCeee-ceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccC----------CceeEEEEEc
Q 004222 95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT----------GELISRWYDI 159 (767)
Q Consensus 95 ~T~~~~~~~~P~w~-e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~----------~~~~~~w~~l 159 (767)
||.|..+++||.|| +-|.|.+... ..+|.|+++|+|..+ +|.||++.|+++.+.. |..++.|+++
T Consensus 39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 99999999999999 5688988763 456999999999999 8999999999887642 3468899999
Q ss_pred cCCCCCCCCCCceEEEEEEEEecCCCCccccccCCCCCCCCccccccccccCCceeEeeeccccCCCCCceecCCCCccC
Q 004222 160 IAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK 239 (767)
Q Consensus 160 ~~~~~~~~~~~g~i~l~l~y~p~~~~p~f~~gi~~~~ef~~v~~s~~p~~~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~ 239 (767)
.+.-. ...|+|.+-++.--......|.+.--+ ..|++.- .+..+.+.+++ .|+.+++++++.++|.
T Consensus 119 fdtih---girgeinvivkvdlfndlnkf~qsscg-vkffctt----sip~~yra~ii------hgfveelvvnddpeyq 184 (1169)
T KOG1031|consen 119 FDTIH---GIRGEINVIVKVDLFNDLNKFPQSSCG-VKFFCTT----SIPFCYRAQII------HGFVEELVVNDDPEYQ 184 (1169)
T ss_pred ceecc---cccceeEEEEEEeehhhhhhccccccc-ceeeecc----cCccceeehhh------hhhhHHhccCCCcchh
Confidence 65532 357999998887776666666554322 2233321 11123344443 3678889999999985
No 126
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.99 E-value=3e-09 Score=114.10 Aligned_cols=163 Identities=17% Similarity=0.296 Sum_probs=107.0
Q ss_pred cCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCc
Q 004222 232 LDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTS 311 (767)
Q Consensus 232 ~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs 311 (767)
...|+ ..-.++|+..|..|+++|+|....+.|......+ .+. ..|.++|++||-|||+||+|+ -...-
T Consensus 270 ~~~gr----t~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~~f------w~iDdaiR~aa~RgV~vR~lv-s~~~~ 337 (456)
T KOG3603|consen 270 NPSGR----TWDLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-HRF------WEIDDAIRRAAVRGVKVRLLV-SCWKH 337 (456)
T ss_pred CCCCC----chhHHHHHHHHHHHhhheeeeehhccchheeecC-cch------hhhhHHHHHHhhcceEEEEEE-eccCC
Confidence 34555 4457899999999999999998888887544433 322 378999999999999999998 22211
Q ss_pred cCccccccCcccc-cCc-HHHHhhhcCCCceEEec--ccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEE
Q 004222 312 HDKLGVKTPGVMA-THD-EETKKFFKHSSVNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (767)
Q Consensus 312 ~~~~~~~~~~~~~-~~~-~~~~~~l~~~gi~v~~~--~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~ 387 (767)
.. .++.. .++ ......+++..|+|+++ |..... -.+...++|.|+||-+. .||
T Consensus 338 ~~------~~m~~~L~SLq~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aay 394 (456)
T KOG3603|consen 338 SE------PSMFRFLRSLQDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAY 394 (456)
T ss_pred CC------chHHHHHHHHHHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------cee
Confidence 00 00000 000 01112234567777754 332111 11223569999999998 899
Q ss_pred EccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEE-----eChHHHHHHHHHHHHHhhhcc
Q 004222 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL-----DGPAAYDVLINFEQRWRKATK 461 (767)
Q Consensus 388 vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri-----~Gpav~dl~~~F~~~W~~~~~ 461 (767)
||..|++.+||.... .+++.| .|+++.+|..+|.++|+....
T Consensus 395 IGTSNws~dYf~~Ta--------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 395 IGTSNWSGDYFTSTA--------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred eeccCCCccceeccC--------------------------------ceEEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence 999999998884310 133333 467899999999999987543
No 127
>PRK05443 polyphosphate kinase; Provisional
Probab=98.99 E-value=1.7e-09 Score=126.81 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=91.0
Q ss_pred HHHHHHHHhccc-----eEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004222 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (767)
Q Consensus 564 ~~~~~~I~~A~~-----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~ 638 (767)
..++++|++|.+ .|.|+...+... ..++.+|.+|+++| |+|+|+++..+ .
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~iv~aL~~Aa~~G--k~V~vlve~ka--r---- 405 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKD-----------------SPIVDALIEAAENG--KQVTVLVELKA--R---- 405 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCC-----------------HHHHHHHHHHHHcC--CEEEEEEccCc--c----
Confidence 678889999999 899986555422 35667788887655 99999999632 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEE
Q 004222 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (767)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (767)
+..++... ..+.|.++|++| .|.+ ...++|+|+++|
T Consensus 406 ----fde~~n~~-------~~~~L~~aGv~V-------~y~~--------------------------~~~k~HaK~~li 441 (691)
T PRK05443 406 ----FDEEANIR-------WARRLEEAGVHV-------VYGV--------------------------VGLKTHAKLALV 441 (691)
T ss_pred ----ccHHHHHH-------HHHHHHHcCCEE-------EEcc--------------------------CCccceeEEEEE
Confidence 11122222 268899999986 4533 145899999999
Q ss_pred eee-------EeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 719 DDE-------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 719 Dd~-------~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
|++ ++.|||+|+|.+|+..+ +|+++++.|++++
T Consensus 442 d~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i~ 481 (691)
T PRK05443 442 VRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 481 (691)
T ss_pred EeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHHH
Confidence 999 99999999999999854 9999999999885
No 128
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.96 E-value=3e-09 Score=121.00 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=101.7
Q ss_pred HHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccc
Q 004222 245 EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA 324 (767)
Q Consensus 245 ~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~ 324 (767)
..++.+|.+|+++|+|++.+|.|+ ..+.++|..|+++||+|+||+ +..+.... ..+.
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~~~----------------~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~------~~~~ 329 (438)
T COG1502 273 RLLLKAINSARESILIATPYFVPD----------------RELLAALKAAARRGVDVRIII-PSLGANDS------AIVH 329 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcCCC----------------HHHHHHHHHHHhcCCEEEEEe-CCCCCCCh------HHHH
Confidence 679999999999999999777775 789999999999999999998 74322111 1111
Q ss_pred cCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCCCCCC
Q 004222 325 THDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404 (767)
Q Consensus 325 ~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~ 404 (767)
.......+.+.+.|++++.++. . ...|.|++|||++ +++|||.|++...+.
T Consensus 330 ~~~~~~~~~l~~~gv~i~~~~~-g---------------~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~----- 380 (438)
T COG1502 330 AAYRAYLKELLEAGVKVYEYPG-G---------------AFLHSKVMIIDDR--------TVLVGSANLDPRSLR----- 380 (438)
T ss_pred HHHHHHHHHHHHhCCEEEEecC-C---------------CcceeeEEEEcCC--------EEEEeCCcCCHhHHH-----
Confidence 1123456777889999875432 0 1289999999999 999999999983221
Q ss_pred CccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHHhhhc
Q 004222 405 LFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (767)
Q Consensus 405 ~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp-av~dl~~~F~~~W~~~~ 460 (767)
--.++.+.|+.+ .+.++...|..+|....
T Consensus 381 ---------------------------lN~E~~~~i~d~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 381 ---------------------------LNFEVGLVIEDPELALKLRREFEADLARSK 410 (438)
T ss_pred ---------------------------HhhhheeEEeCHHHHHHHHHHHHHHHHHHh
Confidence 112578889998 67889999987776543
No 129
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.95 E-value=4.2e-09 Score=92.77 Aligned_cols=73 Identities=42% Similarity=0.754 Sum_probs=64.7
Q ss_pred CCcEEEEEECCe--eeeeeccccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCC-CceeEEEEcccccccCCce
Q 004222 80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (767)
Q Consensus 80 ~dpyv~v~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (767)
.+|||++.+... ...+|+++.++.+|.|||.|.|.+... ...|.|+|||.+..+ +.++|.+.+++.++..+..
T Consensus 21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 799999999765 468999999999999999999999887 667999999999887 8999999999998876544
No 130
>PLN02223 phosphoinositide phospholipase C
Probab=98.93 E-value=1e-08 Score=115.10 Aligned_cols=96 Identities=23% Similarity=0.430 Sum_probs=78.8
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeceEEEeecCCCce-EEEEEEEcCCCC-CceeEEEEcccccccCCcee
Q 004222 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (767)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~ 153 (767)
.||||+|.+.+ ....+|.+..++.||+|||+|.|++..|... |+|+|+|+|..+ ++++|+..+|+..+..|.
T Consensus 435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-- 512 (537)
T PLN02223 435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI-- 512 (537)
T ss_pred CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc--
Confidence 79999999943 3445888888899999999999998887754 899999999876 899999999999999886
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004222 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (767)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~y 179 (767)
++.+|.+..|.+.. ..+|.+.+.|
T Consensus 513 -R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 513 -RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred -eeEeccCCCcCCCC-CceEEEEEEe
Confidence 45788777776643 4567776655
No 131
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.86 E-value=6e-09 Score=123.11 Aligned_cols=124 Identities=25% Similarity=0.372 Sum_probs=101.4
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (767)
-.|.|+|.+..|.+|++.|..+. +||||.+.+..+.+.
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k~vy 1075 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEKSVY 1075 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecceecc
Confidence 36899999999999999888776 999999999998899
Q ss_pred eeccccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCce
Q 004222 95 RTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS 172 (767)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~ 172 (767)
+|+++++|+||+|||+|.+++..- ...+.|.|+|+|... ++.||++.++|+.+..+.....-.+|-+.. .....|.
T Consensus 1076 ktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~--~~~~~g~ 1153 (1227)
T COG5038 1076 KTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT--FIVLDGT 1153 (1227)
T ss_pred cccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCcc--eEecccE
Confidence 999999999999999999998854 445999999999987 899999999999999777666656662221 1233566
Q ss_pred EEEEEEEEec
Q 004222 173 IQLELKFTPC 182 (767)
Q Consensus 173 i~l~l~y~p~ 182 (767)
++....+.+.
T Consensus 1154 ~~~~~~~r~~ 1163 (1227)
T COG5038 1154 LHPGFNFRSK 1163 (1227)
T ss_pred eecceecchh
Confidence 6666655554
No 132
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2e-09 Score=120.46 Aligned_cols=107 Identities=33% Similarity=0.582 Sum_probs=87.2
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--e
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~--~ 91 (767)
+|.|+|.|++|++|+.++..+. +||||++.+- . .
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~~l~~~~~~~ 334 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKVTLLDGDKRL 334 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEEEEecCCcee
Confidence 5899999999999999887765 8999999982 2 4
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~ 166 (767)
.+.+|.+++++.||+|||+|.|.++.. ...|.|+|||+|.++ +++||.+.+.... .+.....|.+++...+.+
T Consensus 335 ~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~p 411 (421)
T KOG1028|consen 335 SKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKP 411 (421)
T ss_pred eeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCc
Confidence 567999999999999999999988754 235999999999998 7899988887765 455566777776554444
No 133
>PLN02952 phosphoinositide phospholipase C
Probab=98.86 E-value=2.3e-08 Score=114.67 Aligned_cols=96 Identities=23% Similarity=0.453 Sum_probs=77.7
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeceEEEeecCCCce-EEEEEEEcCCCC-CceeEEEEcccccccCCcee
Q 004222 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (767)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~ 153 (767)
.||||+|.+-+ ....+|+++.++.||+|||+|.|++..+... |.|.|+|+|..+ ++++|++.+|+..|..|.
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 69999999943 3456999999999999999999998877544 899999999887 899999999999999886
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004222 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (767)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~y 179 (767)
+|++|.+..|.+.. ...|.+.+.|
T Consensus 575 -R~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 575 -RSVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred -eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence 48999777775533 3455555543
No 134
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.84 E-value=1.3e-08 Score=120.34 Aligned_cols=132 Identities=27% Similarity=0.440 Sum_probs=105.1
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (767)
-|.|.|+|.+|++|...+.+.. .+.|||+++.+.+...+|
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~gk 474 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVIGK 474 (1227)
T ss_pred eEEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccCCc
Confidence 3899999999999987663222 238999999998877789
Q ss_pred eccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCcee-EEEEEccCCCCCCCCCCceE
Q 004222 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-SRWYDIIAPSGSPPKPGASI 173 (767)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~-~~w~~l~~~~~~~~~~~g~i 173 (767)
|+++.++.||+|||+|.+.+..-..+|.|+|||.+.+. |+.+|++.++|..+...... ..-+.++.. . +..|+|
T Consensus 475 T~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~-~---k~vGrL 550 (1227)
T COG5038 475 TRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN-T---KNVGRL 550 (1227)
T ss_pred cceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeecc-C---ccceEE
Confidence 99999999999999999999987788999999977666 99999999999988743332 223444222 2 568999
Q ss_pred EEEEEEEecCCCCccccc
Q 004222 174 QLELKFTPCDKNPLYRQG 191 (767)
Q Consensus 174 ~l~l~y~p~~~~p~f~~g 191 (767)
...++|+|......-..+
T Consensus 551 ~yDl~ffp~~e~k~~~~~ 568 (1227)
T COG5038 551 TYDLRFFPVIEDKKELKG 568 (1227)
T ss_pred EEeeeeecccCCcccccc
Confidence 999999998766554433
No 135
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.82 E-value=1.6e-08 Score=94.77 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=62.4
Q ss_pred CCcEEEEEECC--eeeeeeccccCCCC--CeeeceEEEeecCC------------------------CceEEEEEEEcCC
Q 004222 80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV 131 (767)
Q Consensus 80 ~dpyv~v~~~~--~~~~~T~~~~~~~~--P~w~e~~~~~~~~~------------------------~~~l~~~v~d~~~ 131 (767)
+||||++.+.+ ...++|.+..+|.+ |.||+.|.|++..+ ...|.|+|||.|.
T Consensus 25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence 89999999965 56789999999999 99999999997661 1349999999999
Q ss_pred CC-CceeEEEEcccccccCCc
Q 004222 132 FG-AQIIGTAAIPAHTIATGE 151 (767)
Q Consensus 132 ~~-~~~iG~~~~~l~~~~~~~ 151 (767)
++ +++||.++++|..+..+.
T Consensus 105 ~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 105 FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cCCCCcceEEEEEhhhccccc
Confidence 98 999999999999887554
No 136
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.79 E-value=4.4e-08 Score=112.19 Aligned_cols=96 Identities=22% Similarity=0.445 Sum_probs=79.0
Q ss_pred CCcEEEEEEC----CeeeeeeccccCCCCCeeeceEEEeecCCCce-EEEEEEEcCCCC-CceeEEEEcccccccCCcee
Q 004222 80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (767)
Q Consensus 80 ~dpyv~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~ 153 (767)
.||||+|.+- +....+|++..++.||+|||+|.|++..+... |+|.|+|+|..+ ++++|+..||+..|..|..
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR- 574 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH- 574 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc-
Confidence 7999999993 23446899999999999999999998877644 999999999876 9999999999999998865
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004222 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (767)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~y 179 (767)
..+|.+..|.+.. ..+|.+++.|
T Consensus 575 --~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 575 --AVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred --eEeccCCCcCCCC-CCeeEEEEEe
Confidence 4788777776643 4577777765
No 137
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.74 E-value=4.8e-08 Score=111.72 Aligned_cols=98 Identities=26% Similarity=0.484 Sum_probs=81.2
Q ss_pred CCcEEEEEECC----eeeeeec-cccCCCCCeeeceEEEeecCCCce-EEEEEEEcCCCC-CceeEEEEcccccccCCce
Q 004222 80 SDPYVTVVVPQ----ATVARTR-VLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (767)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~-~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (767)
+||||.|++.+ +...+|+ +..++.+|.|+|+|+|++..|... |+|.|+|+|..+ |+|+|+..||+..|..|..
T Consensus 641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR 720 (746)
T KOG0169|consen 641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR 720 (746)
T ss_pred CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCcee
Confidence 78999999843 4567999 556799999999999999988766 899999999998 9999999999999998876
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEEe
Q 004222 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (767)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~i~l~l~y~p 181 (767)
. .+|.+..|... ...+|.+.+++.+
T Consensus 721 h---VpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 721 H---VPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred e---eeecCCCCccc-cceeEEEEEEEec
Confidence 5 67766666553 4577888887754
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=98.74 E-value=1e-07 Score=108.86 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=82.1
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCee-eceEEEeecCCCce-EEEEEEEcCCCC-CceeEEEEcccccccCCce
Q 004222 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (767)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w-~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (767)
.||||+|.+.+ ....+|+++.++.+|+| ||+|.|++..+... |+|.|+|+|..+ ++++|+..||++.|..|..
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR 537 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGVR 537 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCee
Confidence 79999999832 34469999999999999 99999998877644 899999999876 8999999999999998765
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEEec
Q 004222 153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (767)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~i~l~l~y~p~ 182 (767)
..+|.+..|.... ..+|.+++.+.+.
T Consensus 538 ---~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 538 ---AVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred ---EEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 4788777776643 5789999988764
No 139
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.73 E-value=7.1e-08 Score=108.74 Aligned_cols=143 Identities=15% Similarity=0.063 Sum_probs=95.1
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
......+..+|.+|+++|+|++.+|.|+ ..+.++|+.|++|||+|+||+ -+..+..+......
T Consensus 250 ~~l~~~~~~li~~A~~~i~I~TPYF~p~----------------~~l~~~L~~a~~rGv~V~Ii~-~~~~andfy~~~d~ 312 (451)
T PRK09428 250 NLLNKTIFHLMASAEQKLTICTPYFNLP----------------AILVRNIIRLLRRGKKVEIIV-GDKTANDFYIPPDE 312 (451)
T ss_pred hHHHHHHHHHHhccCcEEEEEeCCcCCC----------------HHHHHHHHHHHhcCCcEEEEc-CCcccccCcCCCcc
Confidence 3456778999999999999999999986 789999999999999999998 44422221000000
Q ss_pred cccccCc-HHHHh-----------hhcCCC---ceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceE
Q 004222 321 GVMATHD-EETKK-----------FFKHSS---VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT 385 (767)
Q Consensus 321 ~~~~~~~-~~~~~-----------~l~~~g---i~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~ 385 (767)
.+..... +...+ .+..+| |+++.++ .+..|.|.++||++ +
T Consensus 313 ~~~~~~~~py~ye~~lr~f~~~~~~li~~G~l~v~i~~~~-----------------~~~~HaK~i~vD~~--------~ 367 (451)
T PRK09428 313 PFKIIGALPYLYEINLRRFAKRLQYYIDNGQLNVRLWKDG-----------------DNSYHLKGIWVDDR--------W 367 (451)
T ss_pred HHHHhhhhHHHHHHhhhhhHHHhhhhhhcCcceEEEEecC-----------------CCcceEEEEEEeCC--------E
Confidence 0100000 01111 223344 5544322 22389999999998 9
Q ss_pred EEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhh
Q 004222 386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRK 458 (767)
Q Consensus 386 a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~ 458 (767)
+++||.|++...|.- -.++.+.|..|. ..|...|.+....
T Consensus 368 ~~iGS~Nld~RS~~l--------------------------------n~E~~l~i~d~~-~~l~~~~~~E~~~ 407 (451)
T PRK09428 368 MLLTGNNLNPRAWRL--------------------------------DLENALLIHDPK-QELAEQREKELEL 407 (451)
T ss_pred EEEcCCCCChhHhhh--------------------------------cccceEEEECCh-HHHHHHHHHHHHH
Confidence 999999999843411 125778888886 7788888777644
No 140
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.73 E-value=1.3e-07 Score=108.24 Aligned_cols=96 Identities=22% Similarity=0.457 Sum_probs=79.3
Q ss_pred CCcEEEEEEC----CeeeeeeccccCCCCCeeeceEEEeecCCCce-EEEEEEEcCCCC-CceeEEEEcccccccCCcee
Q 004222 80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (767)
Q Consensus 80 ~dpyv~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~ 153 (767)
.||||+|.+. +....+|+++.++.+|+|||+|.|.+..+... |+|.|+|+|..+ ++++|+..||+..|..|..
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR- 557 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR- 557 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc-
Confidence 7999999994 24456999999999999999999998777644 999999999876 8999999999999998865
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004222 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (767)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~y 179 (767)
..+|.+..|.+.. ..+|.+.+.+
T Consensus 558 --~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 558 --AFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred --eEEccCCCcCCCC-CeeEEEEEEe
Confidence 4788777776643 4577777765
No 141
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.55 E-value=3.1e-07 Score=81.17 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=56.7
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEccccccc
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~ 148 (767)
+||||.|.+++..++||++ +.||.|||+|.|++. ....++|.|||......-.||-.-+.+++|.
T Consensus 23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence 8999999999987789988 489999999999995 4556999999997766678999999998876
No 142
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.55 E-value=2.8e-08 Score=66.45 Aligned_cols=25 Identities=60% Similarity=1.093 Sum_probs=17.2
Q ss_pred eeccceEEEeccCCCCCCcceEEEEccccCCCc
Q 004222 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (767)
Q Consensus 364 ~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~ 396 (767)
+++|+|++|||++ +||+||+|++++
T Consensus 3 ~~~H~K~~vvD~~--------~a~vGg~nl~~~ 27 (28)
T PF00614_consen 3 GSHHQKFVVVDDR--------VAFVGGANLCDG 27 (28)
T ss_dssp BEE---EEEETTT--------EEEEE---SSHH
T ss_pred cceeeEEEEEcCC--------EEEECceecCCC
Confidence 5799999999999 999999999874
No 143
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.54 E-value=5.8e-08 Score=65.54 Aligned_cols=26 Identities=54% Similarity=0.685 Sum_probs=24.6
Q ss_pred eEEeeeEEEEeeeEeeeccCCcCCcC
Q 004222 709 IYVHAKGMIVDDEYVIMGSANINQRS 734 (767)
Q Consensus 709 ~~~HsK~~IVDd~~~~IGSaNld~RS 734 (767)
.++|+|+||+|+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 48999999999999999999999986
No 144
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=98.51 E-value=1e-06 Score=93.55 Aligned_cols=128 Identities=17% Similarity=0.153 Sum_probs=74.6
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhc--CCEEEEEEeCCC-CccCcccc
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLVWDDK-TSHDKLGV 317 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~r--GV~VriLv~D~~-gs~~~~~~ 317 (767)
.++|+.+...|.+|+++|.|++-++-- ..+++++.|..+-.. ..+|.||+ |.. |....+..
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYlG~---------------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~ 101 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYLGK---------------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNS 101 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeeccch---------------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCccc
Confidence 789999999999999999998765422 126889999888655 79999997 875 43332111
Q ss_pred ccCcccccCcHHHHhhhcCCCceEEec--ccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCC
Q 004222 318 KTPGVMATHDEETKKFFKHSSVNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (767)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gi~v~~~--~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~ 395 (767)
...-+.. --.++..+ .|++.++ |........+...++.-...-.|-|+.-+|+ -.++-|+|+++
T Consensus 102 ~s~llp~---~l~kkf~e--~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdd---------eviiSGanls~ 167 (469)
T KOG3964|consen 102 CSALLPV---WLGKKFPE--RVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDD---------EVIISGANLSN 167 (469)
T ss_pred chhhchH---HHhhhhhh--hhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccH---------hhhcccccchh
Confidence 0000000 01112222 3444433 2111100000000011112458999999999 46889999999
Q ss_pred ccc
Q 004222 396 GRY 398 (767)
Q Consensus 396 ~r~ 398 (767)
+++
T Consensus 168 dyf 170 (469)
T KOG3964|consen 168 DYF 170 (469)
T ss_pred hhh
Confidence 665
No 145
>PF13918 PLDc_3: PLD-like domain
Probab=98.45 E-value=5.7e-06 Score=80.62 Aligned_cols=60 Identities=33% Similarity=0.520 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhccceEEEecccccccc------CCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCC
Q 004222 561 SIQTAYIQAIRSAQHFIYIENQYFLGSS------YAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD 634 (767)
Q Consensus 561 ~i~~~~~~~I~~A~~~IyIe~~yFi~~~------~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~ 634 (767)
.-.+++++.|+.|+++|||+-.-|.|.. .+||. +..|++-| +.. |||+||+|+..|...+
T Consensus 82 ~DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~-----------ID~ALR~A-A~~--R~V~VRlLIS~W~ht~ 147 (177)
T PF13918_consen 82 LDLDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPV-----------IDDALRRA-AIE--RGVKVRLLISCWKHTD 147 (177)
T ss_pred cHHHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchh-----------HHHHHHHH-HHH--cCCeEEEEEeecCCCC
Confidence 4478999999999999999987777642 36763 34444333 233 5699999999987543
No 146
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=98.30 E-value=5.4e-06 Score=86.43 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=101.0
Q ss_pred cCCceeEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHH
Q 004222 210 KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGE 289 (767)
Q Consensus 210 ~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~ 289 (767)
.-+++++|+... .... ..+=+.+-..|++|++-|-|.+-.|.+- +-|.+
T Consensus 117 g~Tr~~vy~qPp--~~~~-------------p~IKE~vR~~I~~A~kVIAIVMD~FTD~----------------dIf~D 165 (284)
T PF07894_consen 117 GVTRATVYFQPP--KDGQ-------------PHIKEVVRRMIQQAQKVIAIVMDVFTDV----------------DIFCD 165 (284)
T ss_pred CCceEEEEeCCC--CCCC-------------CCHHHHHHHHHHHhcceeEEEeeccccH----------------HHHHH
Confidence 346889988742 1211 3446678899999999999998888752 56666
Q ss_pred HHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHHHhhhcC--------CCceEEecccccCcccchhhhcccc
Q 004222 290 LLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKH--------SSVNCVLAPRYASSKLSYFKQQIVG 361 (767)
Q Consensus 290 ~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~--------~gi~v~~~~~~~~~~~~~~~~~~~~ 361 (767)
+|.++-+|||-|+||+ |..+...+ ....++ .+++|+.-.. ..++.....+
T Consensus 166 LleAa~kR~VpVYiLL-D~~~~~~F----------------l~Mc~~~~v~~~~~~nmrVRsv~G-----~~y~~rsg~k 223 (284)
T PF07894_consen 166 LLEAANKRGVPVYILL-DEQNLPHF----------------LEMCEKLGVNLQHLKNMRVRSVTG-----CTYYSRSGKK 223 (284)
T ss_pred HHHHHHhcCCcEEEEe-chhcChHH----------------HHHHHHCCCChhhcCCeEEEEecC-----CeeecCCCCe
Confidence 6655559999999998 88765332 222222 2333332100 0111111223
Q ss_pred ceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEe
Q 004222 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (767)
Q Consensus 362 ~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~ 441 (767)
+....|+|+++||+. .++.|+.-++|-.. .- -+.+-..+.
T Consensus 224 ~~G~~~eKF~lvD~~--------~V~~GSYSFtWs~~--~~------------------------------~r~~~~~~t 263 (284)
T PF07894_consen 224 FKGQLKEKFMLVDGD--------KVISGSYSFTWSSS--RV------------------------------HRNLVTVLT 263 (284)
T ss_pred eeCcccceeEEEecc--------cccccccceeeccc--cc------------------------------ccceeEEEe
Confidence 455699999999999 99999998888211 11 124678899
Q ss_pred ChHHHHHHHHHHHHH
Q 004222 442 GPAAYDVLINFEQRW 456 (767)
Q Consensus 442 Gpav~dl~~~F~~~W 456 (767)
|.+|..+.+.|....
T Consensus 264 Gq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 264 GQIVESFDEEFRELY 278 (284)
T ss_pred ccccchHhHHHHHHH
Confidence 999999999997665
No 147
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.26 E-value=4.4e-06 Score=95.11 Aligned_cols=125 Identities=24% Similarity=0.378 Sum_probs=91.9
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (767)
+..-.|.|+|+.||.|+...... ..|||+|++.+
T Consensus 1062 l~p~~lsv~vigaRHL~k~gr~i-------------------------------------------~cPfVevEiiGa~~ 1098 (1267)
T KOG1264|consen 1062 LLPMTLSVKVLGARHLPKLGRSI-------------------------------------------ACPFVEVEIIGAEY 1098 (1267)
T ss_pred ccceEEEEEEeeccccccCCCCc-------------------------------------------cCCcEEEEEecccc
Confidence 44467899999999998433211 56999999943
Q ss_pred --eeeeeeccccCCCCCeee-ceEEEeecCCCce-EEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCC
Q 004222 91 --ATVARTRVLKNSQEPVWN-EHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (767)
Q Consensus 91 --~~~~~T~~~~~~~~P~w~-e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~ 165 (767)
...+.|.|..+.+||+|| |.|+|.+..|.-. |+|.|+|.|.++ ..|||++..|+..+..|-. -.+|.+.-..
T Consensus 1099 Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~GfR---sVpLkN~ySE 1175 (1267)
T KOG1264|consen 1099 DTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGFR---SVPLKNGYSE 1175 (1267)
T ss_pred CCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccce---eeecccCchh
Confidence 333455566789999999 9999999988654 999999999999 5799999999999987643 2555222222
Q ss_pred CCCCCceEEEEEEEEecCCC
Q 004222 166 PPKPGASIQLELKFTPCDKN 185 (767)
Q Consensus 166 ~~~~~g~i~l~l~y~p~~~~ 185 (767)
. -...+|++.+...|....
T Consensus 1176 d-lELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1176 D-LELASLLVFIEMRPVLES 1194 (1267)
T ss_pred h-hhhhhheeeeEeccccCc
Confidence 2 234668888888886443
No 148
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.20 E-value=5.2e-07 Score=101.43 Aligned_cols=91 Identities=23% Similarity=0.409 Sum_probs=79.7
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-----
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----- 90 (767)
+.+|.|.|+-|+++-+.|..|. +||||.|++..
T Consensus 946 ~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~fp 983 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFRFP 983 (1103)
T ss_pred ccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEeccccccc
Confidence 4578899999999999998887 99999999954
Q ss_pred -eeeeeeccccCCCCCeeeceEEEeecCC-Cc----eEEEEEEEcCCCC-CceeEEEEccccccc
Q 004222 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-LS----NLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (767)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~----~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (767)
..++||+|+++|+||+|+|.|.|.++.. .+ .|.|+|+|+|-.+ +||-|.+.+.|.++.
T Consensus 984 ~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 984 AVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 3557999999999999999999998874 22 3899999999998 999999999999877
No 149
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.12 E-value=2.5e-06 Score=77.68 Aligned_cols=81 Identities=27% Similarity=0.494 Sum_probs=65.4
Q ss_pred CCCcEEEEEE---CCeeeeeeccccCCCCCeeeceEEEeecC----------------CCceEEEEEEEcCCC-------
Q 004222 79 TSDPYVTVVV---PQATVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVF------- 132 (767)
Q Consensus 79 ~~dpyv~v~~---~~~~~~~T~~~~~~~~P~w~e~~~~~~~~----------------~~~~l~~~v~d~~~~------- 132 (767)
..++||++.+ ++....+|+++.+|.+|.|+.++.|+++. ....+.|+||+.+.-
T Consensus 32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 4899999996 45666799999999999999999999873 123489999997533
Q ss_pred ----CCceeEEEEccccccc-CCceeEEEEEc
Q 004222 133 ----GAQIIGTAAIPAHTIA-TGELISRWYDI 159 (767)
Q Consensus 133 ----~~~~iG~~~~~l~~~~-~~~~~~~w~~l 159 (767)
+|-.+|++.||+.+|. ....++.||++
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 2568999999999987 34568899975
No 150
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.12 E-value=9.3e-07 Score=59.17 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=17.8
Q ss_pred eEEeeeEEEEeeeEeeeccCCcCCcC
Q 004222 709 IYVHAKGMIVDDEYVIMGSANINQRS 734 (767)
Q Consensus 709 ~~~HsK~~IVDd~~~~IGSaNld~RS 734 (767)
...|+|++|||+++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 47899999999999999999998764
No 151
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.98 E-value=4e-05 Score=90.09 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=84.4
Q ss_pred HHHHHHHHhccc-----eEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004222 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (767)
Q Consensus 564 ~~~~~~I~~A~~-----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~ 638 (767)
..++++|++|.+ .|.|+..-+... ..++.+|.+|+++| ++|+|++.-.+. .|..
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~ii~aL~~Aa~~G--k~V~v~veLkAr--fde~ 400 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTLYRTSKD-----------------SPIIDALIEAAENG--KEVTVVVELKAR--FDEE 400 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEecCC-----------------cHHHHHHHHHHHcC--CEEEEEEEehhh--ccch
Confidence 578889999998 799985444322 25667888887655 999999994321 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEE
Q 004222 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (767)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (767)
.. .. ..+.|.++|++| +|.+ ....+|+|+++|
T Consensus 401 ~n---i~------------wa~~le~aG~~v-------iyg~--------------------------~~~k~H~K~~li 432 (672)
T TIGR03705 401 AN---IR------------WARRLEEAGVHV-------VYGV--------------------------VGLKTHAKLALV 432 (672)
T ss_pred hh---HH------------HHHHHHHcCCEE-------EEcC--------------------------CCeeeeeEEEEE
Confidence 10 01 256788999987 4633 135899999999
Q ss_pred eee-------EeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 719 DDE-------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 719 Dd~-------~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
|++ ++.+||.|+|......- ++++++..+++++
T Consensus 433 ~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~i~ 472 (672)
T TIGR03705 433 VRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPEIG 472 (672)
T ss_pred EEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChHHH
Confidence 984 69999999999965433 7888888888764
No 152
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=97.95 E-value=0.00089 Score=71.62 Aligned_cols=138 Identities=20% Similarity=0.222 Sum_probs=85.6
Q ss_pred chHHHHHHHHHhcc-----ceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccc
Q 004222 242 TCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (767)
Q Consensus 242 ~~f~~l~~~I~~A~-----~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~ 316 (767)
+-|+.+++.|++|- .+|.++-|....+ ..+.++|++||+.|=+|.+++ .-...+.-
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~~----------------S~iv~aLi~AA~nGK~Vtv~v-ELkARFDE-- 78 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLYRVASN----------------SPIVNALIEAAENGKQVTVLV-ELKARFDE-- 78 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEESSS-TT-----------------HHHHHHHHHHHTT-EEEEEE-STTSSSTT--
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEEecCCC----------------CHHHHHHHHHHHcCCEEEEEE-EEeccccH--
Confidence 44777888999883 6888888876543 799999999999999999998 43221110
Q ss_pred cccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCc
Q 004222 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (767)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~ 396 (767)
..+-...+.|+.+|++|.+. .+ .+.-|.|+++|=-+ .+..-..++.+|.=|....
T Consensus 79 --------e~Ni~Wa~~Le~aGv~ViyG--~~--------------glKvHaK~~lI~R~-e~~~~~~Y~hlgTGNyNe~ 133 (352)
T PF13090_consen 79 --------ENNIHWAKRLEEAGVHVIYG--VP--------------GLKVHAKICLIVRR-EGGGLRRYAHLGTGNYNEK 133 (352)
T ss_dssp --------CCCCCCCHHHHHCT-EEEE----T--------------T-EE--EEEEEEEE-ETTEEEEEEEEESS-SSTT
T ss_pred --------HHHhHHHhhHHhcCeEEEcC--CC--------------ChhheeeEEEEEEE-eCCcEEEEEEEcCCCcCcc
Confidence 01113456789999999853 11 23489999999654 1113345788887776540
Q ss_pred ccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHH
Q 004222 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR 455 (767)
Q Consensus 397 r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp-av~dl~~~F~~~ 455 (767)
+ ..-+-|+++.-..+ ++.|+...|...
T Consensus 134 -------------------------------T-Ar~YtD~~l~Ta~~~i~~D~~~~F~~l 161 (352)
T PF13090_consen 134 -------------------------------T-ARIYTDLSLFTADPEIGADVAKLFNYL 161 (352)
T ss_dssp -------------------------------H-CCCEEEEEEEE--HHHHHHHHHHHHHH
T ss_pred -------------------------------c-hhheecceeecCCHHHHHHHHHHHHHH
Confidence 0 12467999888877 578899888643
No 153
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.92 E-value=3.1e-06 Score=95.36 Aligned_cols=90 Identities=20% Similarity=0.459 Sum_probs=70.9
Q ss_pred eeeccccCCCCCeeeceEEEeecCCC-ceEEEEEEEcCCC-------------------------------------CCc
Q 004222 94 ARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVF-------------------------------------GAQ 135 (767)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~-------------------------------------~~~ 135 (767)
+-|.++++|+||.|+|.|.|.+.... ..+.+-+||+|-- .||
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 46888999999999999999998754 3488999987611 168
Q ss_pred eeEEEEcccccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEEecCCC
Q 004222 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (767)
Q Consensus 136 ~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~l~y~p~~~~ 185 (767)
|+|.+.|||.++.. ...++||.| .+.....+..|.++|+++..-...+
T Consensus 259 FLGciNipl~EiP~-~Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 259 FLGCINIPLAEIPP-DGLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred cccccccchhcCCc-chHHHHhcc-CcccccccccceEEEEEEEeeeccc
Confidence 99999999999984 357799999 4544455789999999987665444
No 154
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.86 E-value=1.2e-05 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.3
Q ss_pred eeccceEEEeccCCCCCCcceEEEEccccCCC
Q 004222 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (767)
Q Consensus 364 ~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~ 395 (767)
.++|+|++|||++ .+++||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 3599999999999 99999999987
No 155
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.61 E-value=0.00011 Score=83.45 Aligned_cols=109 Identities=17% Similarity=0.338 Sum_probs=83.4
Q ss_pred CCCCcEEEEEECCe---eeeeeccccCCCCCeeeceEEEeecCC----------------CceEEEEEEE-cCCCC-Cce
Q 004222 78 ITSDPYVTVVVPQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKD-DDVFG-AQI 136 (767)
Q Consensus 78 ~~~dpyv~v~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~----------------~~~l~~~v~d-~~~~~-~~~ 136 (767)
..+|||+++...+. ...+|+++++|.+|.|+|.|.|.+... ...|++.+|+ .+... ++|
T Consensus 149 ~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~F 228 (800)
T KOG2059|consen 149 GQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVF 228 (800)
T ss_pred CCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhh
Confidence 34999999998542 225999999999999999999998765 2348899998 44444 899
Q ss_pred eEEEEcccccccCCceeEEEEEccCCC-CC---CCCCCceEEEEEEEEecCCCC
Q 004222 137 IGTAAIPAHTIATGELISRWYDIIAPS-GS---PPKPGASIQLELKFTPCDKNP 186 (767)
Q Consensus 137 iG~~~~~l~~~~~~~~~~~w~~l~~~~-~~---~~~~~g~i~l~l~y~p~~~~p 186 (767)
+|.+.+|+..+.....-..||.|.... |+ ....-|.+++.++|.-....|
T Consensus 229 lGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlp 282 (800)
T KOG2059|consen 229 LGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLP 282 (800)
T ss_pred ceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceecc
Confidence 999999999888766778899995332 22 223468899999988765444
No 156
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.58 E-value=5.1e-05 Score=89.92 Aligned_cols=106 Identities=20% Similarity=0.403 Sum_probs=86.6
Q ss_pred eEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-
Q 004222 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (767)
Q Consensus 12 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (767)
+.|-.|+|.|-|.-|++|+-.... ..+||||+..+-.
T Consensus 1519 IsY~~~~LtImV~H~K~L~~Lqdg------------------------------------------~~P~pyVK~YLlPd 1556 (1639)
T KOG0905|consen 1519 ISYNNGTLTIMVMHAKGLALLQDG------------------------------------------QDPDPYVKTYLLPD 1556 (1639)
T ss_pred EEEcCceEEEEhhhhcccccccCC------------------------------------------CCCCcceeEEecCC
Confidence 567789999999999999633322 2289999999932
Q ss_pred ---eeeeeeccccCCCCCeeeceEEEe-ecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 91 ---ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 91 ---~~~~~T~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
..+.||+++.+|.+|.|||.++.. ++.. ...|+++||..+.+. +.++|.+.|+|..+....+...||.|
T Consensus 1557 p~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1557 PRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred chHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 456799999999999999998877 3332 245999999998887 89999999999999877777799998
No 157
>PF13918 PLDc_3: PLD-like domain
Probab=97.55 E-value=0.00035 Score=68.26 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=52.4
Q ss_pred CCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHH-hcCCEEEEEE
Q 004222 227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV 305 (767)
Q Consensus 227 ~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa-~rGV~VriLv 305 (767)
.|......|++. -.++++..|+.|+++|+|+...+.|-.. ...+.+.| ..|.++|++|| .|||+||+|+
T Consensus 71 SPp~~~~~gRT~----DldAIl~~I~~A~~fI~IsVMdY~P~~~-~~~~~~YW-----P~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 71 SPPPFCPKGRTL----DLDAILSVIDSAKKFIYISVMDYLPTSR-YSKPNRYW-----PVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred CCcccCCCCCCc----HHHHHHHHHHhHhheEEEEEeecCCeee-cCCCCCcc-----hhHHHHHHHHHHHcCCeEEEEE
Confidence 445545556644 2689999999999999999999998532 22233445 58999999887 8999999998
No 158
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.52 E-value=0.00063 Score=71.22 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004222 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (767)
Q Consensus 559 ~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~ 638 (767)
..+|.+.+.++|++|++-|=|.+=-|+ ..+|...|.+|+. .|+|-|+||++..
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FT------------------D~dIf~DLleAa~-kR~VpVYiLLD~~-------- 184 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFT------------------DVDIFCDLLEAAN-KRGVPVYILLDEQ-------- 184 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeeccc------------------cHHHHHHHHHHHH-hcCCcEEEEechh--------
Confidence 468999999999999999999998888 2455556666651 2569999999951
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEE
Q 004222 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (767)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (767)
..+.|+ +.-.+.++.......+++-.+ .|..... +......+-+|.|+|+|
T Consensus 185 ~~~~Fl---------------~Mc~~~~v~~~~~~nmrVRsv-------------~G~~y~~-rsg~k~~G~~~eKF~lv 235 (284)
T PF07894_consen 185 NLPHFL---------------EMCEKLGVNLQHLKNMRVRSV-------------TGCTYYS-RSGKKFKGQLKEKFMLV 235 (284)
T ss_pred cChHHH---------------HHHHHCCCChhhcCCeEEEEe-------------cCCeeec-CCCCeeeCcccceeEEE
Confidence 112121 222233443211112222221 1111100 01112356899999999
Q ss_pred eeeEeeeccCCcCCcCCCCCCCccceeeec
Q 004222 719 DDEYVIMGSANINQRSMAGSKDTEIAMGSY 748 (767)
Q Consensus 719 Dd~~~~IGSaNld~RS~~~n~d~E~~v~i~ 748 (767)
|++.++.||.-|++.|-..+ .-+..++.
T Consensus 236 D~~~V~~GSYSFtWs~~~~~--r~~~~~~t 263 (284)
T PF07894_consen 236 DGDKVISGSYSFTWSSSRVH--RNLVTVLT 263 (284)
T ss_pred ecccccccccceeecccccc--cceeEEEe
Confidence 99999999999999998755 44444443
No 159
>PLN02866 phospholipase D
Probab=97.46 E-value=0.00046 Score=83.06 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhccceEEEeccccccccCCC-cccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEec
Q 004222 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAW-PSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 628 (767)
Q Consensus 560 ~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~-p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp 628 (767)
...+.++.++|++||++|||+.-.|.|..+.+ |. ....+..+...|.++++ +||+|+||+-
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~------~D~~g~RL~~lL~rKAk--rGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPF------HDHESSRLDSLLEAKAK--QGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecC------CCchHHHHHHHHHHHHH--CCCEEEEEEE
Confidence 57899999999999999999654444322111 10 01124567777777765 5599999854
No 160
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.021 Score=65.38 Aligned_cols=138 Identities=22% Similarity=0.287 Sum_probs=85.2
Q ss_pred ccchHHHHHHHHHhccc-----eEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCc
Q 004222 240 PGTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDK 314 (767)
Q Consensus 240 ~~~~f~~l~~~I~~A~~-----~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~ 314 (767)
|-+.|+.+++.|++|-. .|-++-|.... ..+|++||++||+.|-+|-+|| .=..-+.
T Consensus 350 PYeSF~~Vv~fl~qAA~DP~VLAIKqTLYRt~~----------------dSpIV~ALi~AA~nGKqVtvlV-ELkARFD- 411 (696)
T COG0855 350 PYESFEPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVRALIDAAENGKQVTVLV-ELKARFD- 411 (696)
T ss_pred chhhhHHHHHHHHHhhcCCCeEEEEEEEEecCC----------------CCHHHHHHHHHHHcCCeEEEEE-EEhhhcC-
Confidence 35668899999999953 34445554322 3799999999999999999998 2211100
Q ss_pred cccccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCC
Q 004222 315 LGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (767)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~ 394 (767)
.-.+-...+.|+.+|++|.+- + ..+..|.|+++|=-+ ++++..-|+ -++
T Consensus 412 ---------EE~NI~WAk~LE~AGvhVvyG--~--------------~glKtHAKm~lVvRr---E~~~lrrY~---HlG 460 (696)
T COG0855 412 ---------EEANIHWAKRLERAGVHVVYG--V--------------VGLKTHAKMLLVVRR---EGGKLRRYV---HLG 460 (696)
T ss_pred ---------hhhhhHHHHHHHhCCcEEEec--c--------------cceeeeeeEEEEEEe---cCCcEEEEE---Eec
Confidence 011224567799999999852 1 123489999998554 122223332 222
Q ss_pred CcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHH
Q 004222 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFE 453 (767)
Q Consensus 395 ~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp-av~dl~~~F~ 453 (767)
.|.|. + .+. .-+-|+++.-..| ++.|+...|.
T Consensus 461 TGNYn----~----------------------~TA-riYTD~sl~Tad~~i~~Dv~~lFn 493 (696)
T COG0855 461 TGNYN----P----------------------KTA-RLYTDLSLLTADPEIGADVTDLFN 493 (696)
T ss_pred CCCCC----c----------------------cce-eeeeechhccCCHHHHHHHHHHHH
Confidence 32221 1 011 2355888777666 5789998886
No 161
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.26 E-value=0.00019 Score=84.41 Aligned_cols=88 Identities=23% Similarity=0.409 Sum_probs=76.6
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCee-eee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VAR 95 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~-~~~ 95 (767)
-.++|.|++|-+|.+.|..+. +|||+.+.++.+. .-+
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d~ 650 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLDR 650 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhhh
Confidence 357799999999999998876 9999999998743 347
Q ss_pred eccccCCCCCeeeceEEEeecCCCce-EEEEEEEcCCCC-CceeEEEEccccc
Q 004222 96 TRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHT 146 (767)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~ 146 (767)
+..+.+|+||+|++.|.+....+... +.++|+|+|.++ |+.||...+.|+.
T Consensus 651 ~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 651 AHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred hhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 88999999999999999997777544 999999999998 9999999999874
No 162
>PLN02352 phospholipase D epsilon
Probab=97.19 E-value=0.0014 Score=77.38 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=39.7
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCC--CC-CCCCCCCcHHHHHHHHHhc--CCEEEEEE
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQT--RP-LPRGGDLTLGELLKYKSEE--GVRVLLLV 305 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~--~~-~~~g~~~~l~~~L~~aa~r--GV~VriLv 305 (767)
.++..+.+++|++||++|||+.=+|....+...... .. -..+ ..|.++|.+|.++ +-+|.|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~--~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIP--IEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchH--HHHHHHHHHHHhCCCCCEEEEEE
Confidence 678999999999999999998655543211110000 00 0011 3677777777655 68888887
No 163
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.14 E-value=0.00033 Score=75.16 Aligned_cols=98 Identities=15% Similarity=0.307 Sum_probs=79.5
Q ss_pred CCcEEEEEEC----CeeeeeeccccCCCCCeeeceEEEeecCC------------CceEEEEEEEcCCC--CCceeEEEE
Q 004222 80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVF--GAQIIGTAA 141 (767)
Q Consensus 80 ~dpyv~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~~~------------~~~l~~~v~d~~~~--~~~~iG~~~ 141 (767)
.|-|+++++. .....+|.+++.|.+|.|.|.|.+.+... ...++|++++...| +|.++|++.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 6788888872 34456999999999999999999998762 12499999999988 399999999
Q ss_pred cccccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 004222 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (767)
Q Consensus 142 ~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~l~y~ 180 (767)
+.|.-|....+++..++|.+. .+. .+|.|.++++..
T Consensus 468 ikle~Len~cei~e~~~l~DG-RK~--vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDG-RKA--VGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceecccc-ccc--cCCeeEEEEEEe
Confidence 999999999999999999543 332 478888888754
No 164
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=97.12 E-value=0.0017 Score=76.52 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=78.6
Q ss_pred CCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcC--CEEEEEE--eCCC
Q 004222 234 GGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLV--WDDK 309 (767)
Q Consensus 234 ~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rG--V~VriLv--~D~~ 309 (767)
.|....+..+-.+.+.+|++||+.|||+.=.|.....-. ....... +..|..-+.+|.++| -+|+|++ |-++
T Consensus 558 ~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~--~~~~n~v--~~ela~rIv~a~ra~e~frVYIVIPL~Pgf 633 (887)
T KOG1329|consen 558 GGINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNW--DSVLNKV--GDELALRIVKAIRAGEKFRVYIVIPLWPGF 633 (887)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCC--CcccchH--HHHHHHHHHHHHhcCCceEEEEEEeCCccc
Confidence 344445577888999999999999999743333221000 0000011 145555566666655 6777776 3211
Q ss_pred CccCcccccc--------CcccccCcHHHHhhhcCCCceEE-ecccccCcccchh---hhccccceeeccceEEEeccCC
Q 004222 310 TSHDKLGVKT--------PGVMATHDEETKKFFKHSSVNCV-LAPRYASSKLSYF---KQQIVGTIFTHHQKCVLVDTQA 377 (767)
Q Consensus 310 gs~~~~~~~~--------~~~~~~~~~~~~~~l~~~gi~v~-~~~~~~~~~~~~~---~~~~~~~~~r~H~K~~VVD~~~ 377 (767)
-.-..++-.+ ..-|.--.....+.|++.|++-. +-....+..+..+ .+...+...--|.|+||||++
T Consensus 634 EG~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD~- 712 (887)
T KOG1329|consen 634 EGDDTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDDE- 712 (887)
T ss_pred cCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccccccceEEEEEEeeeeEEecCC-
Confidence 0000000000 00000011244566777776621 0000000001111 111223344589999999999
Q ss_pred CCCCcceEEEEccccCCCcccCC
Q 004222 378 SGNNRKITAFIGGIDLCDGRYDT 400 (767)
Q Consensus 378 ~~~~~~~~a~vGG~Ni~~~r~d~ 400 (767)
+++|||+||.+...++
T Consensus 713 -------~vIIGSANINqRSm~G 728 (887)
T KOG1329|consen 713 -------YVIIGSANINQRSMLG 728 (887)
T ss_pred -------EEEEeecccchhhccC
Confidence 9999999999944443
No 165
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.00016 Score=75.72 Aligned_cols=125 Identities=22% Similarity=0.293 Sum_probs=92.8
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----ee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~~ 92 (767)
..+..+|.+|++|++++..+. .|||++..+.. ..
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl~ 130 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKLN 130 (362)
T ss_pred hhcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhhh
Confidence 357889999999999998887 89999998843 22
Q ss_pred eeeeccccCCCCCeeeceEEEeecCC----CceEEEEEEEcCCCC-CceeEEEEcccccccC--CceeEEEEEccCCCC-
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSG- 164 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~--~~~~~~w~~l~~~~~- 164 (767)
..+|++..++.||+|+|..+...-.. .+.+.+.|.|.+.+. .+++|+..+++..+.. +..+..|+.-..+..
T Consensus 131 slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~r 210 (362)
T KOG1013|consen 131 SLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSER 210 (362)
T ss_pred hhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCccc
Confidence 35888999999999999877763332 344888999999888 8999999999988873 334445655422211
Q ss_pred ---CCCCCCceEEEEEEEEecC
Q 004222 165 ---SPPKPGASIQLELKFTPCD 183 (767)
Q Consensus 165 ---~~~~~~g~i~l~l~y~p~~ 183 (767)
...+..|+|.+++.|....
T Consensus 211 ad~~~~E~rg~i~isl~~~s~~ 232 (362)
T KOG1013|consen 211 ADRDEDEERGAILISLAYSSTT 232 (362)
T ss_pred ccccchhhccceeeeeccCcCC
Confidence 1135688999999876653
No 166
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0008 Score=70.68 Aligned_cols=100 Identities=24% Similarity=0.333 Sum_probs=77.3
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (767)
.+-|.|+++++..|-.+|..+- +||||...+.. .
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~~ 269 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGKK 269 (362)
T ss_pred CCceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcchh
Confidence 3458899999999998887665 99999998842 3
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
-+.||.+.++|.+|+|+++|.+.+.+.. ..+.|.|||++.-+ .+++|-+.... ...++....|+.-
T Consensus 270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRC 339 (362)
T ss_pred hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc--cccchhhcCcccc
Confidence 3569999999999999999999988754 34899999999885 88888755443 3444555555543
No 167
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0021 Score=72.21 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=67.3
Q ss_pred CCcEEEEEEC------CeeeeeeccccCCCCCeeeceEEEeecCCCc----eEEEEEEEcCCCC-CceeEEEEccccccc
Q 004222 80 SDPYVTVVVP------QATVARTRVLKNSQEPVWNEHFNIPLAHPLS----NLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (767)
Q Consensus 80 ~dpyv~v~~~------~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~----~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (767)
--|||+|.+- ..++..|+++.++-.|-+||+|.|.+.+... .|.++|+|+--.. |.++|-+.++|.++.
T Consensus 1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence 4699999982 2456788899999999999999999887543 3889999986666 889999999999998
Q ss_pred CCceeEEEEEc
Q 004222 149 TGELISRWYDI 159 (767)
Q Consensus 149 ~~~~~~~w~~l 159 (767)
....-..|++|
T Consensus 1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred hcCceeEeeec
Confidence 77777889999
No 168
>PLN02964 phosphatidylserine decarboxylase
Probab=96.92 E-value=0.0014 Score=76.72 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=67.1
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCCCce-EEEEEEEcCCCC-CceeEEEEcccccccCCce--eEE
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL--ISR 155 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~--~~~ 155 (767)
.|+|..+..-+..+.||.+.++|.+|+||+...|.+...... ..|.|||.+.++ ++.+|.+.++|..+...+. +..
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 789887777667779999999999999999999998876544 799999999998 9999999999987774432 112
Q ss_pred EEEccCCCC
Q 004222 156 WYDIIAPSG 164 (767)
Q Consensus 156 w~~l~~~~~ 164 (767)
-|.+.++.+
T Consensus 148 aF~lfD~dg 156 (644)
T PLN02964 148 SFDLLDPSS 156 (644)
T ss_pred HHHHHCCCC
Confidence 244555543
No 169
>PLN03008 Phospholipase D delta
Probab=96.84 E-value=0.0025 Score=75.50 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=42.4
Q ss_pred cCCCCccCc-cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCC----CCcHHHHHHHHHhc--CCEEEEE
Q 004222 232 LDGGKLYKP-GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG----DLTLGELLKYKSEE--GVRVLLL 304 (767)
Q Consensus 232 ~~~g~~y~~-~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~----~~~l~~~L~~aa~r--GV~VriL 304 (767)
+.+|+...- ..+..+.+++|++||+.|||+.=+|....+..... ...|. ...|..+|.+|.++ +-+|.|+
T Consensus 556 l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~---~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IV 632 (868)
T PLN03008 556 LECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSY---RDAGADNLIPMELALKIVSKIRAKERFAVYVV 632 (868)
T ss_pred cccccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccc---cccccccchhHHHHHHHHHHHhCCCCCEEEEE
Confidence 444444433 56788999999999999999865554432111000 00011 13566666666544 7888888
Q ss_pred E
Q 004222 305 V 305 (767)
Q Consensus 305 v 305 (767)
+
T Consensus 633 i 633 (868)
T PLN03008 633 I 633 (868)
T ss_pred E
Confidence 7
No 170
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.0018 Score=69.15 Aligned_cols=108 Identities=22% Similarity=0.389 Sum_probs=85.4
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (767)
.|.|+|.|++|++|....-... -++|||+|.+-. .
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~-----------------------------------------~~apyVkVYlL~~g~c~ 306 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKS-----------------------------------------LPAPYVKVYLLENGFCI 306 (405)
T ss_pred cCceeEEEEecccccccCCccc-----------------------------------------ccCceeEEEEcCCCcee
Confidence 4789999999999975442111 289999999832 3
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEE-cCCCC-CceeEEEEcccccccCCc-eeEEEEEccCCCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD-DDVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIAPSG 164 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d-~~~~~-~~~iG~~~~~l~~~~~~~-~~~~w~~l~~~~~ 164 (767)
.+.+|+...+|..|-+-+...|.-..+...|.++||- ..... +.|+|.+++-++++..+. ....||++...+.
T Consensus 307 ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 307 AKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred cccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 3458999999999999888899888888889999985 44544 789999999999998766 7789999965543
No 171
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.027 Score=55.13 Aligned_cols=141 Identities=19% Similarity=0.269 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
+-...++...|+.|++...+..|+-..+ -.-+.+.|..+..+||++|||. +..-+.
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~sG---------------~sll~~~L~d~~~Kgvkgkilt-s~Ylnf-------- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITESG---------------LSLLFDLLLDLVNKGVKGKILT-SDYLNF-------- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeCcc---------------HHHHHHHHHHHhcCCceEEEec-ccccCc--------
Confidence 4578899999999999888888874332 3688999999999999999997 443221
Q ss_pred cccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCC
Q 004222 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (767)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (767)
+.+...++.+.-.+|+++++.- + +..+|.|=.|.-.. ....|++||.|+++.-...
T Consensus 94 ----TdP~al~~Ll~~~nve~r~~~~-~--------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 94 ----TDPVALRKLLMLKNVELRVSTI-G--------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred ----cCHHHHHHHHhhhccceEEEec-C--------------ccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 1223345555555688776421 1 12378887776443 2348999999999944311
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCce-eeeeEEeChHHHHHHHHHHHHHhh
Q 004222 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWRK 458 (767)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~-D~~vri~Gpav~dl~~~F~~~W~~ 458 (767)
. ..|. -+...-.|.+|..+...|...|..
T Consensus 150 -n----------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 150 -N----------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred -C----------------------------HHHHhhhccccccchHHHHHHHHHHHHHh
Confidence 1 1232 133445788899999999999973
No 172
>PLN02270 phospholipase D alpha
Probab=96.40 E-value=0.008 Score=71.29 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecC-CCCCCCCC----CCcHHHHHHHHHhc--CCEEEEEE
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TRPLPRGG----DLTLGELLKYKSEE--GVRVLLLV 305 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~-~~~~~~g~----~~~l~~~L~~aa~r--GV~VriLv 305 (767)
.++..+++.+|++||++|||+.=+|.......... ..+...|. ...|...|.++.++ +-+|.|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 67899999999999999999876665432111000 00001111 13556666666444 78999987
No 173
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.20 E-value=0.0066 Score=68.54 Aligned_cols=113 Identities=24% Similarity=0.311 Sum_probs=75.9
Q ss_pred CCcEEEEEEC---C--eeeeeeccccCCCCCeeeceEEEeecC-----CCceEEEEEEEcCCCC-CceeEEEEccccccc
Q 004222 80 SDPYVTVVVP---Q--ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (767)
Q Consensus 80 ~dpyv~v~~~---~--~~~~~T~~~~~~~~P~w~e~~~~~~~~-----~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (767)
+|||..+.-- + ..+.+|.+++++++|.|. .|.+++.. ....+++.++|.+..+ +++||+++.++.++.
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 9999988762 2 456799999999999997 46665333 3456999999999998 799999999999887
Q ss_pred CCceeEEEEEccCCCCCC----CCCCceEEEEEEEEecCCCCccccccCCCC
Q 004222 149 TGELISRWYDIIAPSGSP----PKPGASIQLELKFTPCDKNPLYRQGIAGDP 196 (767)
Q Consensus 149 ~~~~~~~w~~l~~~~~~~----~~~~g~i~l~l~y~p~~~~p~f~~gi~~~~ 196 (767)
.......| .+..+..+. .+..|++ .+.-+.......|...++++.
T Consensus 236 ~~~~~~~~-~~~~~~~~~~~k~~k~~g~~--~l~~~~~~~~~sfld~i~gg~ 284 (529)
T KOG1327|consen 236 EPGSPNQI-MLINPKKKAKKKSYKNSGQL--ILDRFTSLDQYSFLDYIAGGE 284 (529)
T ss_pred ccCCcccc-cccChhhhhhhhcccccceE--EehheeehhhhhHHHHHccCc
Confidence 42222223 333333211 2233443 344345557777888877744
No 174
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.98 E-value=0.036 Score=57.56 Aligned_cols=50 Identities=30% Similarity=0.268 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D 307 (767)
+...+.+.++|++|+++|+|..|. .. -..|.+.|.+|.+|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~--~~---------------l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP--EF---------------LEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G--GG---------------HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH--HH---------------HHHHHHHHHHHHHCCCEEEEEEeC
Confidence 678899999999999999999873 11 168999999999999999999843
No 175
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.92 E-value=0.0066 Score=51.94 Aligned_cols=74 Identities=14% Similarity=0.293 Sum_probs=54.9
Q ss_pred cEEEE--EECCeeeeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEE
Q 004222 82 PYVTV--VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (767)
Q Consensus 82 pyv~v--~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~ 155 (767)
-|++- .++..-..||.....+.||+|.|+|.|.+.... -.|.|.|+. ... ...||.+.+.+.++- .++..+
T Consensus 23 i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~g-eeE~~H 99 (103)
T cd08684 23 IYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLS-TQETDH 99 (103)
T ss_pred eEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecccCC-HHHhhh
Confidence 35443 345555579999999999999999999977643 337788887 333 789999999998776 345667
Q ss_pred EEE
Q 004222 156 WYD 158 (767)
Q Consensus 156 w~~ 158 (767)
|.+
T Consensus 100 W~e 102 (103)
T cd08684 100 WLE 102 (103)
T ss_pred hhc
Confidence 765
No 176
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=95.61 E-value=0.0023 Score=75.63 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=75.3
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (767)
-.+++.|.+|+.|...++.+. +|||..+++-++. ..|
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~------------------------------------------sdp~a~v~f~~qs-~~T 242 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDE------------------------------------------SDPDAAVEFCGQS-KET 242 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccC------------------------------------------CCchhhhhccccc-cee
Confidence 346667788888887776665 9999999997765 489
Q ss_pred ccccCCCCCeeeceEEEeecC----------CCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEcc
Q 004222 97 RVLKNSQEPVWNEHFNIPLAH----------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (767)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~----------~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~ 160 (767)
-++.+|+||.|++...|.--. .-..+.++++|.+..+ ++++|.......-... ...-.|+++.
T Consensus 243 ~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~ 316 (1105)
T KOG1326|consen 243 EVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTM 316 (1105)
T ss_pred EeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEee
Confidence 999999999999998886211 1123889999999998 9999997765443332 3455799883
No 177
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=95.23 E-value=0.05 Score=58.56 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCc
Q 004222 605 MELALKIASKIRANERFAVYVIIPMWPEGDPKTN-TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKR 683 (767)
Q Consensus 605 ~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~ 683 (767)
..++.+|.+|++.| -+|.+++--.+. .|.. ++ .| .+.|.++|++| +|.+
T Consensus 50 S~iv~aLi~AA~nG--K~Vtv~vELkAR--FDEe~Ni----~W------------a~~Le~aGv~V-------iyG~--- 99 (352)
T PF13090_consen 50 SPIVNALIEAAENG--KQVTVLVELKAR--FDEENNI----HW------------AKRLEEAGVHV-------IYGV--- 99 (352)
T ss_dssp -HHHHHHHHHHHTT---EEEEEESTTSS--STTCCCC----CC------------CHHHHHCT-EE-------EE-----
T ss_pred CHHHHHHHHHHHcC--CEEEEEEEEecc--ccHHHHh----HH------------HhhHHhcCeEE-------EcCC---
Confidence 35778888888766 788888886442 2221 12 13 56788999987 5744
Q ss_pred cCCCcccccCCCCcccccccCCccceEEeeeEEEEee-------eEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 684 EEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDD-------EYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd-------~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
...-+|||+++|=. +++.+|+-|+|...-..= +.++++..+++++
T Consensus 100 -----------------------~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~i~ 151 (352)
T PF13090_consen 100 -----------------------PGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPEIG 151 (352)
T ss_dssp -----------------------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HHHH
T ss_pred -----------------------CChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHHHH
Confidence 24589999999863 589999999999876533 7889988888875
No 178
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.17 E-value=0.1 Score=61.45 Aligned_cols=101 Identities=24% Similarity=0.374 Sum_probs=74.6
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (767)
..-+++.|+||++.-|..++ ..-||.|.+-+
T Consensus 700 vIA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP~ 733 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLPT 733 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCCc
Confidence 45678999999999887544 56899998822
Q ss_pred ---eeeeeeccccC-CCCCeeec-eEEEe--ecCCCceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCC
Q 004222 91 ---ATVARTRVLKN-SQEPVWNE-HFNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (767)
Q Consensus 91 ---~~~~~T~~~~~-~~~P~w~e-~~~~~--~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~ 163 (767)
.+..+|+++.. +.||+|+| .|.|. +.+....|+|.|++++ ..+||+--+|+..+..|..+ .-|.+.+
T Consensus 734 Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~GYrh---v~LRse~ 807 (1189)
T KOG1265|consen 734 DTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAGYRH---VCLRSES 807 (1189)
T ss_pred hhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCccee---EEecCCC
Confidence 24468888775 99999985 57887 3344556999999875 47999999999999887654 4454444
Q ss_pred CCC
Q 004222 164 GSP 166 (767)
Q Consensus 164 ~~~ 166 (767)
+.+
T Consensus 808 Nqp 810 (1189)
T KOG1265|consen 808 NQP 810 (1189)
T ss_pred CCc
Confidence 433
No 179
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.76 E-value=0.92 Score=43.00 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=68.8
Q ss_pred CcEEEEEECCee--eeeeccc-cCCCCCeeeceEEEeecCC---------CceEEEEEEEcCCCCC-ceeEEEEcccccc
Q 004222 81 DPYVTVVVPQAT--VARTRVL-KNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVFGA-QIIGTAAIPAHTI 147 (767)
Q Consensus 81 dpyv~v~~~~~~--~~~T~~~-~~~~~P~w~e~~~~~~~~~---------~~~l~~~v~d~~~~~~-~~iG~~~~~l~~~ 147 (767)
-.||....++.. ...|... ..+..-.|+|.|.+++... ...++|.|+....-+. ..+|++.|.|.++
T Consensus 25 ~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey 104 (143)
T PF10358_consen 25 KVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEY 104 (143)
T ss_pred EEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHh
Confidence 345555444433 2344333 3466789999999885431 1238899988754443 5999999999999
Q ss_pred cC--CceeEEEEEccCCCCCCCCCCceEEEEEEEEecCCCCcc
Q 004222 148 AT--GELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLY 188 (767)
Q Consensus 148 ~~--~~~~~~w~~l~~~~~~~~~~~g~i~l~l~y~p~~~~p~f 188 (767)
.. ......-++|. .+ .....+|.+++.+.+...++.|
T Consensus 105 ~~~~~~~~~~~~~l~-~~---~~~~a~L~isi~~~~~~~~~~~ 143 (143)
T PF10358_consen 105 ANEDEEPITVRLLLK-KC---KKSNATLSISISLSELREDPDF 143 (143)
T ss_pred hCcCCCcEEEEEeCc-cC---CCCCcEEEEEEEEEECccCCCC
Confidence 85 34566667763 32 1356889999999988776653
No 180
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.54 E-value=0.43 Score=52.07 Aligned_cols=104 Identities=15% Similarity=0.230 Sum_probs=78.1
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecC--------CCceEEEEEEEcCC-CC-CceeEEEEcccccc--
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH--------PLSNLEIQVKDDDV-FG-AQIIGTAAIPAHTI-- 147 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~--------~~~~l~~~v~d~~~-~~-~~~iG~~~~~l~~~-- 147 (767)
..-++...+++.. -.|..+..+..|.||..+.+.+.. +..+|++++|-.|. .+ -..||.+.++|-..
T Consensus 18 ~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~ 96 (340)
T PF12416_consen 18 HPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV 96 (340)
T ss_pred ccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence 3457777788765 488899999999999999888665 34559999999883 34 68999999999888
Q ss_pred -cCC--ceeEEEEEccCCCCCCCCCCceEEEEEEEEecCC
Q 004222 148 -ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (767)
Q Consensus 148 -~~~--~~~~~w~~l~~~~~~~~~~~g~i~l~l~y~p~~~ 184 (767)
..+ ....+|++|+..+++-.+...+|.+.+.......
T Consensus 97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 434 4566899998774433335667888887766544
No 181
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=93.08 E-value=0.24 Score=57.12 Aligned_cols=94 Identities=19% Similarity=0.311 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccC
Q 004222 606 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE 685 (767)
Q Consensus 606 ~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~ 685 (767)
.++.++++|+++| -+|.+|+--.+ ..|..+. .+| .+.|.++|++| +|.+
T Consensus 385 pIV~ALi~AA~nG--KqVtvlVELkA--RFDEE~N---I~W------------Ak~LE~AGvhV-------vyG~----- 433 (696)
T COG0855 385 PIVRALIDAAENG--KQVTVLVELKA--RFDEEAN---IHW------------AKRLERAGVHV-------VYGV----- 433 (696)
T ss_pred HHHHHHHHHHHcC--CeEEEEEEEhh--hcChhhh---hHH------------HHHHHhCCcEE-------Eecc-----
Confidence 5778888888877 67778887532 2222111 123 67789999987 5643
Q ss_pred CCcccccCCCCcccccccCCccceEEeeeEEEEee-------eEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 686 APKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDD-------EYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd-------~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
.....|+|+++|=. +++-+|+-|.+..+..+= +.++++..|++++
T Consensus 434 ---------------------~glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriY--TD~sl~Tad~~i~ 485 (696)
T COG0855 434 ---------------------VGLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 485 (696)
T ss_pred ---------------------cceeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeee--eechhccCCHHHH
Confidence 13478999998853 489999999999987543 7888888888886
No 182
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.06 E-value=1 Score=39.10 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=61.7
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEc
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
.+..+.+.+++..+++|.-+.. .+..|++.|+|.+... ..|+|.|+=.|- -...|...+.|++...+ .-.++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdRs-RELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELERS-RELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeecc-cEEEEEEEEecc--hhhhhheeeEhhhhccc----ceecc
Confidence 6788889999999999988776 5788999999999764 479999976544 34566666777773321 11233
Q ss_pred cCCCCCCCCCCceEEEEEEE
Q 004222 160 IAPSGSPPKPGASIQLELKF 179 (767)
Q Consensus 160 ~~~~~~~~~~~g~i~l~l~y 179 (767)
.+.|.+..+++|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 567889988888
No 183
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=92.04 E-value=1.6 Score=42.15 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=69.9
Q ss_pred EEEEEECCeeeeeeccccCCCCCeeeceEEEeecCCC--------------ceEEEEEEEcCCCC-CceeEEEEcccccc
Q 004222 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (767)
Q Consensus 83 yv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--------------~~l~~~v~d~~~~~-~~~iG~~~~~l~~~ 147 (767)
.+.+.+.+++ ++|+.+..+.+|.|+|.|-|.+.... .+|.+.|.-.|..+ ..++|...+..-.+
T Consensus 37 ~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~v 115 (156)
T PF15627_consen 37 TLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKV 115 (156)
T ss_pred EEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHH
Confidence 4444456655 79999999999999999999988752 23777777777766 58888888888776
Q ss_pred cCCcee--EEEEEccCCCCCCCCCCceEEEEEEEEecCC
Q 004222 148 ATGELI--SRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (767)
Q Consensus 148 ~~~~~~--~~w~~l~~~~~~~~~~~g~i~l~l~y~p~~~ 184 (767)
...... ..-..|.+......-+.|.|.+++..+|...
T Consensus 116 L~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 116 LCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred hccCCCccceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence 633322 3334443333221126899999999888643
No 184
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=91.59 E-value=0.92 Score=44.73 Aligned_cols=120 Identities=17% Similarity=0.176 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCch
Q 004222 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (767)
Q Consensus 560 ~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~ 639 (767)
..++..+...|+.|+++..+. -|+... . -..+...+..+ .++||+++|+++..-+ -.+ +
T Consensus 38 e~il~~Li~~l~k~~ef~IsV--aFit~s-----G---------~sll~~~L~d~--~~Kgvkgkilts~Yln-fTd-P- 96 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV--AFITES-----G---------LSLLFDLLLDL--VNKGVKGKILTSDYLN-FTD-P- 96 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE--EEeeCc-----c---------HHHHHHHHHHH--hcCCceEEEecccccC-ccC-H-
Confidence 578999999999999888777 465431 1 12233345555 4577999999985321 001 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEEe
Q 004222 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (767)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVD 719 (767)
.++ .+.|.-..+++ +++..+. .-.|.|-.|..
T Consensus 97 -------------~al---~~Ll~~~nve~------r~~~~~~--------------------------~~fH~KgYiFe 128 (198)
T COG3886 97 -------------VAL---RKLLMLKNVEL------RVSTIGS--------------------------ANFHTKGYIFE 128 (198)
T ss_pred -------------HHH---HHHHhhhccce------EEEecCc--------------------------cccccceeEEE
Confidence 111 22222233443 3554322 23455544433
Q ss_pred ---eeEeeeccCCcCCcCCCCCCCccceeeecCC
Q 004222 720 ---DEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (767)
Q Consensus 720 ---d~~~~IGSaNld~RS~~~n~d~E~~v~i~~p 750 (767)
.-.++|||.|+....+.- |.|-++-+...
T Consensus 129 ~~~~~taiiGSsNlt~sALt~--n~Ewn~k~s~~ 160 (198)
T COG3886 129 HNTGITAIIGSSNLTDSALTV--NEEWNLKVSSS 160 (198)
T ss_pred ecceEEEEEccchhhhhhccc--CHHHHhhhccc
Confidence 224999999999999874 48888776554
No 185
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=91.33 E-value=4.1 Score=40.29 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=46.0
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeeceEEEeecCCC----ceEEEEEEEcCCCC-----------------
Q 004222 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG----------------- 133 (767)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~----------------- 133 (767)
.+-||++.+ ++... ..|+.+.-+..+.|||.++|++.... ..|.|+||+....+
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~ 106 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKD 106 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCc
Confidence 567888766 44322 25655555678999999999866532 34999999864321
Q ss_pred CceeEEEEccccccc
Q 004222 134 AQIIGTAAIPAHTIA 148 (767)
Q Consensus 134 ~~~iG~~~~~l~~~~ 148 (767)
...||.+.++|-+..
T Consensus 107 ~~~ig~~n~~LFd~~ 121 (173)
T cd08693 107 DNPIAWVNTMVFDYK 121 (173)
T ss_pred ceEEEEEeEEEEccc
Confidence 368888888876533
No 186
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.29 E-value=0.57 Score=49.30 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=77.0
Q ss_pred eeEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC
Q 004222 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (767)
Q Consensus 11 ~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~ 90 (767)
.+.-..|.|.+.++.+|+|.-.. |.++-+.+-||.++.+.
T Consensus 45 ~~~s~tGiL~~H~~~GRGLr~~p----------------------------------------~~kglt~~~ycVle~dr 84 (442)
T KOG1452|consen 45 RLVSSTGILYFHAYNGRGLRMTP----------------------------------------QQKGLTVCFYCVLEPDR 84 (442)
T ss_pred eeecccceEEEEEecccccccCh----------------------------------------hccCceeeeeeeeeecc
Confidence 34566788999999999986322 23444588999999998
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-C--ceeEEEEcccccccC-CceeEEEEEccCCCCCC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-A--QIIGTAAIPAHTIAT-GELISRWYDIIAPSGSP 166 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~--~~iG~~~~~l~~~~~-~~~~~~w~~l~~~~~~~ 166 (767)
+..++|++......-.|.|.|.+.+.+.. .+.+-|+.|+... + +..| .+.+..+.. ......-+.+
T Consensus 85 qh~aRt~vrs~~~~f~w~e~F~~Dvv~~~-vl~~lvySW~pq~RHKLC~~g--~l~~~~v~rqspd~~~Al~l------- 154 (442)
T KOG1452|consen 85 QHPARTRVRSSGPGFAWAEDFKHDVVNIE-VLHYLVYSWPPQRRHKLCHLG--LLEAFVVDRQSPDRVVALYL------- 154 (442)
T ss_pred cCccccccccCCCCccchhhceeecccce-eeeEEEeecCchhhccccccc--hhhhhhhhhcCCcceeeeec-------
Confidence 87788888888888899999999876532 5666777776553 4 3445 344444432 2122122222
Q ss_pred CCCCceEEEEEEE
Q 004222 167 PKPGASIQLELKF 179 (767)
Q Consensus 167 ~~~~g~i~l~l~y 179 (767)
++.|++-+.+.+
T Consensus 155 -ePrgq~~~r~~~ 166 (442)
T KOG1452|consen 155 -EPRGQPPLRLPL 166 (442)
T ss_pred -ccCCCCceeccc
Confidence 456777666643
No 187
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=90.82 E-value=1.4 Score=42.95 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=45.5
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeeceEEEeecCCC----ceEEEEEEEcCCCC-----CceeEEEEcccc
Q 004222 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (767)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~-----~~~iG~~~~~l~ 145 (767)
+|-||++.+ ++... ..|..+.. .++.|||-.+|++.... ..|.|++|+....+ ...||.+.++|-
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 578888876 44322 14544443 68999999999876532 34999999865421 256899888887
Q ss_pred ccc
Q 004222 146 TIA 148 (767)
Q Consensus 146 ~~~ 148 (767)
+..
T Consensus 105 d~~ 107 (158)
T cd08398 105 DYT 107 (158)
T ss_pred CCC
Confidence 543
No 188
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.95 E-value=1.3 Score=43.08 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=51.5
Q ss_pred CCCcEEEEEE--CCee---eeeeccccCCCCCeeeceEEEeecCCC----ceEEEEEEEcCCCC-CceeEEEEcccccc
Q 004222 79 TSDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (767)
Q Consensus 79 ~~dpyv~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~-~~~iG~~~~~l~~~ 147 (767)
.+|-||++.+ ++.. ..+|..+.-+..+.|||-.+|++.... ..|.|+||+.+..+ ...||.+.++|-+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3788999877 3332 226666666778999999999976543 34999999987664 67999999988764
No 189
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=86.31 E-value=7.2 Score=41.88 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=29.6
Q ss_pred ceEEeeeEEEE-e---eeEeeeccCCcCC-cCCCCCCCccceeeecCC
Q 004222 708 MIYVHAKGMIV-D---DEYVIMGSANINQ-RSMAGSKDTEIAMGSYQP 750 (767)
Q Consensus 708 ~~~~HsK~~IV-D---d~~~~IGSaNld~-RS~~~n~d~E~~v~i~~p 750 (767)
...+|+|+.+. . +..++||||||.. -.+. .+-.| .+++.|+
T Consensus 78 ~~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 78 DPPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CCCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecCh
Confidence 35789999998 2 4489999999998 4443 24589 5555565
No 190
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=85.62 E-value=4 Score=39.40 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=47.3
Q ss_pred CCcEEEEEE--CCe---eeeeeccccCCCCCeeeceEEEeecCCC----ceEEEEEEEcCCCC---CceeEEEEcccccc
Q 004222 80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG---AQIIGTAAIPAHTI 147 (767)
Q Consensus 80 ~dpyv~v~~--~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~---~~~iG~~~~~l~~~ 147 (767)
.+-||++.+ ++. ....|.....+.++.|||..+|++.... ..|.|++|+.+..+ ...||.+.++|-+.
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 567777766 332 2224444444478999999999865432 34999999876543 58999999998764
Q ss_pred c
Q 004222 148 A 148 (767)
Q Consensus 148 ~ 148 (767)
.
T Consensus 108 ~ 108 (156)
T cd08380 108 K 108 (156)
T ss_pred c
Confidence 4
No 191
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=84.40 E-value=5.9 Score=39.00 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=44.1
Q ss_pred CCcEEEEEE--CCeee---eeecccc----CCCCCeeeceEEEeecCCC----ceEEEEEEEcCCCC----------Cce
Q 004222 80 SDPYVTVVV--PQATV---ARTRVLK----NSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG----------AQI 136 (767)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~----~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~----------~~~ 136 (767)
.|-|+.+.+ +++.. ..|+... -...+.|||-.+|++.-.. ..|.|++|+....+ ...
T Consensus 29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~ 108 (171)
T cd04012 29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE 108 (171)
T ss_pred ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence 678888877 43322 1333221 1346779999999865432 34999999865432 468
Q ss_pred eEEEEccccccc
Q 004222 137 IGTAAIPAHTIA 148 (767)
Q Consensus 137 iG~~~~~l~~~~ 148 (767)
||.+.++|-+..
T Consensus 109 lG~~~~~LFd~~ 120 (171)
T cd04012 109 LGWVSLPLFDFR 120 (171)
T ss_pred EEEEeEeeEcch
Confidence 888888886543
No 192
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=82.94 E-value=3.5 Score=42.77 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecC
Q 004222 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (767)
Q Consensus 559 ~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~ 629 (767)
...+.+.+.++|++|++.|+|+.+.=. -..+...|.++.+ |||.|.+++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~~~------------------l~~l~~~L~~a~~--rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPPEF------------------LEELRDELEEAVD--RGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-GGG------------------HHHHHHHHHHHHH--TT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCHHH------------------HHHHHHHHHHHHH--CCCEEEEEEeC
Confidence 478999999999999999999965421 2245556666655 55999999985
No 193
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=81.58 E-value=7.3 Score=36.99 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=46.5
Q ss_pred CcEEEEEE--CCe----eeeeeccccCC-CCCeeeceEEEeecCC----CceEEEEEEEcCCCC-C----ceeEEEEccc
Q 004222 81 DPYVTVVV--PQA----TVARTRVLKNS-QEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-A----QIIGTAAIPA 144 (767)
Q Consensus 81 dpyv~v~~--~~~----~~~~T~~~~~~-~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~----~~iG~~~~~l 144 (767)
+.||++.+ +++ .+..|....-+ ..+.|+|.++|++... ...|.|+|+..+... . ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 35666666 442 23366666666 8999999999996542 234999999877665 3 6899999998
Q ss_pred cccc
Q 004222 145 HTIA 148 (767)
Q Consensus 145 ~~~~ 148 (767)
-+..
T Consensus 83 Fd~~ 86 (142)
T PF00792_consen 83 FDYR 86 (142)
T ss_dssp B-TT
T ss_pred ECCC
Confidence 7664
No 194
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=80.62 E-value=13 Score=36.88 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=33.0
Q ss_pred cEEEEEE--CCee--eeeeccccCCCCCeeeceEEEeecCCC----ceEEEEEEEcC
Q 004222 82 PYVTVVV--PQAT--VARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDD 130 (767)
Q Consensus 82 pyv~v~~--~~~~--~~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~ 130 (767)
-||++.+ ++.. ..+|..+.-+.++.|||-++|++.... ..|.|+||+..
T Consensus 32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 5666544 3321 125666666788999999999866533 34999999864
No 195
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=79.53 E-value=7.1 Score=38.36 Aligned_cols=76 Identities=14% Similarity=0.314 Sum_probs=60.6
Q ss_pred cccCCCCCCcEEEEEECCeeeeeeccccC--CCCCeeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEccccccc
Q 004222 73 RKSKIITSDPYVTVVVPQATVARTRVLKN--SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (767)
Q Consensus 73 ~~~~~~~~dpyv~v~~~~~~~~~T~~~~~--~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~ 148 (767)
|.++.....-|++|.+.++.+.+|+...- ...-.++|.|.+.+..--..|.|+||.....++..|+++.+|+-...
T Consensus 30 RR~~~~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 30 RRQRVQKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred hHHHhhheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 44455567899999999988888877654 44456789999998776667999999998877999999999986544
No 196
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=79.50 E-value=0.95 Score=51.70 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=29.2
Q ss_pred cceEEeeeEEEEee-------eEeeeccCCcCCcCCCCC----------CCccceeeecC
Q 004222 707 FMIYVHAKGMIVDD-------EYVIMGSANINQRSMAGS----------KDTEIAMGSYQ 749 (767)
Q Consensus 707 ~~~~~HsK~~IVDd-------~~~~IGSaNld~RS~~~n----------~d~E~~v~i~~ 749 (767)
.....|+|+++... .|+++||+||..-++. + +|.|++|++.-
T Consensus 345 ~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG-~~~~~~~~l~i~nyElGVl~~P 403 (443)
T PF06087_consen 345 SRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWG-KRSKNGSQLSIRNYELGVLFLP 403 (443)
T ss_dssp TTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEEG
T ss_pred CCcCcceEEEEEecCCCCCccceEEeCcccCCHHHhc-ccccCCceeeecceEEEEEEec
Confidence 35688999999987 4999999999876664 3 67999999943
No 197
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=76.07 E-value=5.7 Score=39.56 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=32.9
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC--C--ceeEEEEccccc
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG--A--QIIGTAAIPAHT 146 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~--~--~~iG~~~~~l~~ 146 (767)
....|.+...+.+|.|+|+|.+.++.+. ..|.|++++..... + ..+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3458888889999999999999998764 23999999866543 2 578888777765
No 198
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=74.77 E-value=4.2 Score=44.53 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCC
Q 004222 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (767)
Q Consensus 560 ~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~ 631 (767)
...++.+...|..||++|+|++-|.--. ..+++..|-.++.....++|.|+++..-
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 4678999999999999999999887521 4678888888998899999999999643
No 199
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.12 E-value=1.6 Score=51.06 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=68.0
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccC-CceeEEEE
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWY 157 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~-~~~~~~w~ 157 (767)
.+||+.|.++......+.+.+.+..|.|+++|.+.+.. ...+.|.|+...... +.+...+.+-.+++.. ......|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 79999999987666677788899999999999999654 346888888876555 5555555555555442 22344677
Q ss_pred EccCCCCCCCCCCceEEEEEEEEecCC
Q 004222 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (767)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~y~p~~~ 184 (767)
.+ +..|++...+.+..+..
T Consensus 107 ~~--------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LI--------EELGTLLKPAALTGTLE 125 (694)
T ss_pred cc--------ccccceeeeecccCcCC
Confidence 65 34577888777666544
No 200
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=72.93 E-value=20 Score=35.93 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=37.9
Q ss_pred eeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC---CceeEEEEccc
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG---AQIIGTAAIPA 144 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~---~~~iG~~~~~l 144 (767)
..+|-+...+.+|.|+|++.+.++... ..|.|++++..... ...+|-+-+||
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 468999999999999999999988753 34889888754432 14455555555
No 201
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=72.86 E-value=22 Score=31.64 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=34.5
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeeceEEEeecCCC----ceEEEEEEEcC
Q 004222 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDD 130 (767)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~ 130 (767)
++-||++.+ ++... ..|..+.-+..+.|||-.+|++.... ..|.|++|+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 478888876 43322 25665555667999999999866533 34899999753
No 202
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=69.47 E-value=35 Score=30.86 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=49.9
Q ss_pred EEEEEECCeeeeeeccccCCCCCeeeceEEEeecCC--------CceEEEEEEEcCCCCCceeEEEEcccccccC--Cce
Q 004222 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT--GEL 152 (767)
Q Consensus 83 yv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~--------~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~--~~~ 152 (767)
||.+.+-+-....|.++. ..+|.+|-+-.+.+... ...+.|++...-......+|.+++++..+.. ++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566666443434566655 88999998777777764 2348899987664446899999999999873 334
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEE
Q 004222 153 ISRWYDIIAPSGSPPKPGASIQLELKF 179 (767)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~i~l~l~y 179 (767)
+..-..+.+.+++ .-|.|...++.
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEe
Confidence 6666666555553 56888777764
No 203
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=63.16 E-value=28 Score=34.75 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=32.3
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCCCc---eEEEEEEEcC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLS---NLEIQVKDDD 130 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~---~l~~~v~d~~ 130 (767)
..+.|.|...+.+|.|+|++.+.++.... .|.|+.++.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 45688999999999999999999887542 3999999865
No 204
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=55.38 E-value=26 Score=34.82 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=32.5
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCCCc---eEEEEEEEcCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLS---NLEIQVKDDDV 131 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~---~l~~~v~d~~~ 131 (767)
..+.|.|...+.+|.|+|++.+.++.... .|.|++++.+.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 44688999999999999999999887542 38999988543
No 205
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=55.29 E-value=19 Score=36.13 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=38.4
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-----CceeEEEEccc
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-----AQIIGTAAIPA 144 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-----~~~iG~~~~~l 144 (767)
..++|-+...+.+|.|+|++.+.++.. ...|.|++++..... ...+|-+-+||
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 346888999999999999999998875 334999998865331 23455555555
No 206
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=50.42 E-value=25 Score=34.77 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=36.1
Q ss_pred eeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC------CceeEEEEccccc
Q 004222 95 RTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG------AQIIGTAAIPAHT 146 (767)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~------~~~iG~~~~~l~~ 146 (767)
-|.++....+|.|+|++.+.++... ..|.|++++.+... ...+|-+.+||-+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4444555589999999999987653 33999999865332 4567766666654
No 207
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=48.97 E-value=19 Score=41.39 Aligned_cols=59 Identities=27% Similarity=0.388 Sum_probs=47.7
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCCC-ceEEEEEEEcCCC----C-CceeEEEEcccccccC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVF----G-AQIIGTAAIPAHTIAT 149 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~----~-~~~iG~~~~~l~~~~~ 149 (767)
..+.+|.++.+..||.|-+.|.+....+. ..|++.++|.+.. . .+|+|++...+.++..
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence 34569999999999999999888866554 4499999987654 2 6999999999988773
No 208
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=44.08 E-value=20 Score=37.29 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=47.9
Q ss_pred HHHHHhccceEEE--EEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCccccc
Q 004222 248 CHAISEAHHLIYI--VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMAT 325 (767)
Q Consensus 248 ~~~I~~A~~~I~I--~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~ 325 (767)
++-+..+|..|-. ..|+++.+..|... -..-++++|..||+++...|+.+-.+..+ .
T Consensus 110 ~~~~~~sR~~IA~l~~~Fi~dg~~ILtHg--------~SRvVl~~L~~Aa~~~~~F~V~vTEsrPd-------------~ 168 (313)
T KOG1466|consen 110 IERARKSRQKIAMLAQDFITDGCTILTHG--------YSRVVLEVLLTAAQNKKRFRVYVTESRPD-------------G 168 (313)
T ss_pred HHHHHHHHHHHHHHhhhHhhCCCEEEEcc--------hhHHHHHHHHHHHhcCceEEEEEecCCCC-------------C
Confidence 4445555555533 34444444444322 12689999999999999999998222211 1
Q ss_pred CcHHHHhhhcCCCceEEe
Q 004222 326 HDEETKKFFKHSSVNCVL 343 (767)
Q Consensus 326 ~~~~~~~~l~~~gi~v~~ 343 (767)
.+....+.|.+.||.+.+
T Consensus 169 sG~lm~~~L~~~~IPvtl 186 (313)
T KOG1466|consen 169 SGKLMAKELKKLGIPVTL 186 (313)
T ss_pred chhHHHHHHHhcCCCeEE
Confidence 234678889999999864
No 209
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=42.71 E-value=31 Score=38.77 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=35.8
Q ss_pred eeEEEEccccc-ccCCceeEEEEEccCCCCCCCCCCceEEEEEEEEecCCCC
Q 004222 136 IIGTAAIPAHT-IATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (767)
Q Consensus 136 ~iG~~~~~l~~-~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~l~y~p~~~~p 186 (767)
.+|.+.||++. +..+...+.|+++.+...+. ...|.+ ++++|.-..-.|
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~~VLp 50 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEENFVLP 50 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeeceecc
Confidence 48999999999 66777889999997655433 345666 788776654443
No 210
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=38.06 E-value=1e+02 Score=31.94 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=33.4
Q ss_pred HHHHHHHHhccc--eEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEE
Q 004222 245 EDICHAISEAHH--LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (767)
Q Consensus 245 ~~l~~~I~~A~~--~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv 305 (767)
..+-++++.|++ .=.+.+..+.+|..-.++.. .. +..+.++|.+|.++||+|...-
T Consensus 155 KHLreL~~~~~~G~ra~vlf~v~r~d~~~F~P~~---e~--Dp~fa~~l~~A~~~GVev~~~~ 212 (235)
T COG1489 155 KHLRELERLAKEGYRAVVLFLVLRSDITRFSPNR---EI--DPKFAELLREAIKAGVEVLAYR 212 (235)
T ss_pred HHHHHHHHHHHcCCceEEEEEEecCCCcEECccc---cc--CHHHHHHHHHHHHcCCEEEEEE
Confidence 445555555543 22233444455544444332 11 3789999999999999998764
No 211
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=37.29 E-value=4.1e+02 Score=29.92 Aligned_cols=78 Identities=23% Similarity=0.404 Sum_probs=47.1
Q ss_pred ceEEEEEEEcCC-------CCCceeEEEEccccccc-CCc---eeEEEEEccCCCC-CCCCCCceEEEEEEEEecCCCCc
Q 004222 120 SNLEIQVKDDDV-------FGAQIIGTAAIPAHTIA-TGE---LISRWYDIIAPSG-SPPKPGASIQLELKFTPCDKNPL 187 (767)
Q Consensus 120 ~~l~~~v~d~~~-------~~~~~iG~~~~~l~~~~-~~~---~~~~w~~l~~~~~-~~~~~~g~i~l~l~y~p~~~~p~ 187 (767)
..|+|.||--.. .+..+||++.|+|+--- .+. .+..|..+-.... +......+|+|.++-.| +|-
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep---DPR 171 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP---DPR 171 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC---CCe
Confidence 359999997432 23589999999997322 222 3667999832221 11124678888887655 455
Q ss_pred cccccCCCCCCCC
Q 004222 188 YRQGIAGDPEHKG 200 (767)
Q Consensus 188 f~~gi~~~~ef~~ 200 (767)
|.--.++++|..+
T Consensus 172 fVFQFdgepecSP 184 (460)
T PF06219_consen 172 FVFQFDGEPECSP 184 (460)
T ss_pred eEEEcCCccccCc
Confidence 5555455554433
No 212
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=33.40 E-value=53 Score=37.26 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHHHhhhcCCCceEEec
Q 004222 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA 344 (767)
Q Consensus 285 ~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 344 (767)
..+-..|.+|.+.|.+.|++|.|..... .++...+.|.+.||+|.+-
T Consensus 370 ~vV~~ill~A~~~~k~frVvVVDSRP~~-------------EG~~~lr~Lv~~GinctYv 416 (556)
T KOG1467|consen 370 SVVNMILLEAKELGKKFRVVVVDSRPNL-------------EGRKLLRRLVDRGINCTYV 416 (556)
T ss_pred HHHHHHHHHHHHhCcceEEEEEeCCCCc-------------chHHHHHHHHHcCCCeEEE
Confidence 4677888899999999999997875321 2457888999999999753
No 213
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=33.32 E-value=56 Score=29.17 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=17.4
Q ss_pred CcHHHHHHHHHhcCCEEEEEEe
Q 004222 285 LTLGELLKYKSEEGVRVLLLVW 306 (767)
Q Consensus 285 ~~l~~~L~~aa~rGV~VriLv~ 306 (767)
-.|+++|.+++++|.+|.|- |
T Consensus 63 ~~i~~~Le~~~~~g~~V~v~-W 83 (99)
T PF09345_consen 63 MDIFDLLEDAAQKGGKVTVN-W 83 (99)
T ss_pred HHHHHHHHHHHhcCCcEEEE-E
Confidence 36777888889999999987 6
No 214
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=31.25 E-value=1.2e+02 Score=31.59 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=33.4
Q ss_pred chHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEE
Q 004222 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (767)
Q Consensus 242 ~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv 305 (767)
.....|.+++++ .+.+ |.+-...+|....++.. . -+..+.++|.+|.++||+|.-+-
T Consensus 157 kHL~eL~~l~~~-~ra~-vlF~vqr~d~~~f~p~~---~--~Dp~fa~~l~~A~~~GVev~a~~ 213 (232)
T TIGR00230 157 KHLRELEEILKE-SRAV-VLFVVALPSVRAFSPNR---E--GDEEYYRLLRRAHEAGVEVRPYQ 213 (232)
T ss_pred HHHHHHHHHHHh-CCEE-EEEEEeCCCCCEEeeCc---c--cCHHHHHHHHHHHHCCCEEEEEE
Confidence 344455555555 3333 23333344444443332 1 13699999999999999998764
No 215
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=30.38 E-value=92 Score=33.55 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHHHhhhcCCCceEEe
Q 004222 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL 343 (767)
Q Consensus 285 ~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 343 (767)
..+.+.|+.|+.+|.++++++-++...+ .+..+.+.|++.||++.+
T Consensus 130 ~~v~~~l~~A~~~~k~~~V~VtESRP~~-------------eG~~~ak~L~~~gI~~~~ 175 (301)
T COG1184 130 KTVLEVLKTAADRGKRFKVIVTESRPRG-------------EGRIMAKELRQSGIPVTV 175 (301)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCcc-------------hHHHHHHHHHHcCCceEE
Confidence 7999999999999998888874544221 135678899999999764
No 216
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=28.92 E-value=4.3e+02 Score=24.37 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=37.7
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCC--CCCceeEEEEccccccc
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDV--FGAQIIGTAAIPAHTIA 148 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~--~~~~~iG~~~~~l~~~~ 148 (767)
+.||++|.-.+..+..|........-.=.+.+.+.+..+ ...+.|.+++... .....+..+.+--.-+.
T Consensus 25 c~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 25 CRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCCEEEEEEEEEGGGSB
T ss_pred EEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccccCeEEEEEEeeeeee
Confidence 899999998877664433333222111123344443322 2348888888763 33566666655444333
No 217
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=26.41 E-value=5.9e+02 Score=24.51 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=41.1
Q ss_pred HHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHh--CCCeEEEEEecCCCCCCCCCchh
Q 004222 563 QTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRA--NERFAVYVIIPMWPEGDPKTNTV 640 (767)
Q Consensus 563 ~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~--grgV~V~Illp~~~~~~~d~~~~ 640 (767)
...+-.-+..--..|.|+.||..-.. -..+..++++.+-+ ++-+.|++++.. +...+.
T Consensus 8 d~LFg~Yl~d~~~~I~ieDPYir~~h---------------Qi~Nl~~F~El~vk~~~~~~~i~LvT~~----d~~~~~- 67 (148)
T cd02685 8 DRLFGPYLDDGVTEITVEDPYIRNFH---------------QIRNFLRFCELVVKPPCELKYIHLVTGE----DEDNGK- 67 (148)
T ss_pred HHHHHHHHhCCceEEEEeCccccchH---------------HHHHHHHHHHHHhcCccceEEEEEEecC----CCCCHH-
Confidence 34444556633348999999987431 12223333443321 234788888775 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCC
Q 004222 641 QEILFWQSQTMQMMYSVVAQELREMQVDA 669 (767)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i 669 (767)
-+.. ....+.+.|.+.||..
T Consensus 68 -----~Q~~----~l~~i~~sl~~~gI~~ 87 (148)
T cd02685 68 -----QQIE----ALEEIKQSLASHGVEF 87 (148)
T ss_pred -----HHHH----HHHHHHHHHHhCCcEE
Confidence 1111 2234577888889864
No 218
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=25.69 E-value=99 Score=32.40 Aligned_cols=48 Identities=38% Similarity=0.313 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEE
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv 305 (767)
.+.-..+.+.|+.|++.|.++.. ... -..+.+.|..+.+|||.|.+++
T Consensus 119 ~~i~~~~~e~i~~a~~ei~~~~~--~e~---------------~~~l~~~l~~~~~rgv~v~i~~ 166 (247)
T COG1378 119 EEIIEKIKEVINEAEKEIIIVLP--YEI---------------FKELKEPLIRALKRGVRVLILV 166 (247)
T ss_pred HHHHHHHHHHHHhhhcEEEEEeC--HHH---------------HHHhHHHHHHHHHccCeEEEEe
Confidence 66788999999999999999866 111 1688999999999999999997
No 219
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=25.55 E-value=5.2e+02 Score=27.91 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=20.6
Q ss_pred eccceEEEe-ccCCCCCCcceEEEEccccCCC
Q 004222 365 THHQKCVLV-DTQASGNNRKITAFIGGIDLCD 395 (767)
Q Consensus 365 r~H~K~~VV-D~~~~~~~~~~~a~vGG~Ni~~ 395 (767)
+-|.|+.+. ... ....|||||+|++.
T Consensus 80 ~~HgKlY~f~k~g-----~~~~a~IGSANfS~ 106 (296)
T PF09565_consen 80 PYHGKLYIFSKNG-----KPFRAYIGSANFSQ 106 (296)
T ss_pred CcccEEEEEecCC-----CceEEEEeeccccc
Confidence 379999999 332 33599999999998
No 220
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=23.84 E-value=5.3e+02 Score=28.23 Aligned_cols=94 Identities=12% Similarity=0.186 Sum_probs=61.8
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCC--eeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEccccc--ccCCceeEE
Q 004222 80 SDPYVTVVVPQATVARTRVLKNSQEP--VWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHT--IATGELISR 155 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P--~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~--~~~~~~~~~ 155 (767)
..-|++++.+... ..|..+.-+..- .-.+...+.+..-...|++.|+-....+...||.+.+.+.. +...-+-..
T Consensus 74 khiyIef~~Gr~d-~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYD-FTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceE-EEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 5567777777644 355444433332 33456666676666679999999888888999999998864 233445668
Q ss_pred EEEccCCCCCCCCCCceEEEEEE
Q 004222 156 WYDIIAPSGSPPKPGASIQLELK 178 (767)
Q Consensus 156 w~~l~~~~~~~~~~~g~i~l~l~ 178 (767)
||-+ ...| +..+.|.|++.
T Consensus 153 Wy~c-~kDG---q~~cRIqLSFh 171 (508)
T PTZ00447 153 WFVC-FKDG---QEICKVQMSFY 171 (508)
T ss_pred eEEE-ecCC---ceeeeEEEEeh
Confidence 9988 4444 23566666653
No 221
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=22.01 E-value=3.9e+02 Score=31.42 Aligned_cols=92 Identities=16% Similarity=0.362 Sum_probs=57.4
Q ss_pred cEEEEEECCeeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCC----CCceeEEEEcccccccCCceeEEEE
Q 004222 82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF----GAQIIGTAAIPAHTIATGELISRWY 157 (767)
Q Consensus 82 pyv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~----~~~~iG~~~~~l~~~~~~~~~~~w~ 157 (767)
.||++++++.+. +|.-. ....|.|.-.=.|...++...+++.++.+..- .|.-+|.+-+.- -........|+
T Consensus 362 vyctmevegekl-qtdqa-easkp~wgtqgdfstthplpvvkvklftestgvlaledkelgrvil~p--tpns~ks~ewh 437 (1218)
T KOG3543|consen 362 VYCTMEVEGEKL-QTDQA-EASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELGRVILQP--TPNSAKSPEWH 437 (1218)
T ss_pred EEEEEEeccccc-ccchh-hhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhCeEEEec--CCCCcCCccce
Confidence 799999988664 45433 34579999777777777777788888876532 367888866532 22233445788
Q ss_pred EccCCCCCCCCCCceEEEEEE
Q 004222 158 DIIAPSGSPPKPGASIQLELK 178 (767)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~ 178 (767)
.+.-+.+.. ...-+|.+.++
T Consensus 438 ~mtvpknsq-dqdlkiklavr 457 (1218)
T KOG3543|consen 438 TMTVPKNSQ-DQDLKIKLAVR 457 (1218)
T ss_pred eeecCCCCc-CccceEEEEEe
Confidence 875443322 23334554444
Done!