Query 004222
Match_columns 767
No_of_seqs 438 out of 3207
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 100.0 5.4E-38 1.9E-42 360.2 15.7 158 241-461 65-225 (506)
2 3hsi_A Phosphatidylserine synt 100.0 2.3E-37 7.7E-42 348.1 17.5 350 208-751 23-401 (458)
3 1xdp_A Polyphosphate kinase; P 99.9 1.2E-25 4E-30 261.7 18.5 272 241-753 346-633 (687)
4 2o8r_A Polyphosphate kinase; s 99.9 1.3E-23 4.3E-28 242.7 24.1 274 241-753 351-639 (705)
5 4ggj_A Mitochondrial cardiolip 99.8 2.2E-19 7.5E-24 179.8 11.6 133 241-460 45-178 (196)
6 2fk9_A Protein kinase C, ETA t 99.8 1.2E-18 4.2E-23 167.5 12.7 129 11-180 23-156 (157)
7 1gmi_A Protein kinase C, epsil 99.7 9.9E-18 3.4E-22 157.7 14.0 130 13-182 2-134 (136)
8 3b7y_A E3 ubiquitin-protein li 99.7 2.3E-17 7.8E-22 158.3 14.8 124 15-181 18-153 (153)
9 2dmh_A Myoferlin; beta-sandwic 99.7 3.4E-17 1.2E-21 154.6 15.2 124 15-184 5-136 (140)
10 1wfj_A Putative elicitor-respo 99.7 1.6E-17 5.4E-22 156.0 12.3 124 14-184 7-133 (136)
11 3kwu_A MUNC13-1; calcium bindi 99.7 1.3E-16 4.3E-21 152.2 18.2 122 13-180 13-146 (148)
12 1byr_A Protein (endonuclease); 99.7 2.9E-17 1E-21 157.8 13.3 135 241-460 13-149 (155)
13 2ep6_A MCTP2 protein; beta san 99.7 6.2E-17 2.1E-21 151.5 13.9 122 14-181 10-132 (133)
14 3m7f_B E3 ubiquitin-protein li 99.7 1E-16 3.5E-21 157.6 15.1 124 16-182 7-142 (176)
15 1rlw_A Phospholipase A2, CALB 99.7 1.4E-16 4.7E-21 147.5 12.4 118 16-181 2-125 (126)
16 4gel_A Mitochondrial cardiolip 99.7 1.3E-16 4.4E-21 162.7 11.3 150 241-460 57-210 (220)
17 2nq3_A Itchy homolog E3 ubiqui 99.7 4.3E-16 1.5E-20 152.7 13.3 126 14-184 33-164 (173)
18 3pyc_A E3 ubiquitin-protein li 99.7 1.1E-15 3.7E-20 142.8 15.0 120 17-179 5-131 (132)
19 2b3r_A Phosphatidylinositol-4- 99.6 2.7E-15 9.3E-20 140.7 14.0 109 9-160 12-129 (134)
20 3f04_A Synaptotagmin-1; C2A, c 99.6 4.9E-15 1.7E-19 140.3 11.7 104 15-160 32-141 (143)
21 1rsy_A Synaptotagmin I; calciu 99.6 6.1E-15 2.1E-19 141.3 12.5 104 15-160 40-149 (152)
22 3fdw_A Synaptotagmin-like prot 99.6 4.9E-15 1.7E-19 141.2 11.4 106 16-163 22-136 (148)
23 4ggj_A Mitochondrial cardiolip 99.6 7.8E-16 2.7E-20 154.0 6.0 119 560-753 45-163 (196)
24 2r83_A Synaptotagmin-1; C2A-C2 99.6 2.2E-14 7.5E-19 151.7 17.2 126 15-182 17-148 (284)
25 2q3x_A Regulating synaptic mem 99.6 8.5E-15 2.9E-19 143.2 12.9 108 13-162 26-140 (171)
26 1a25_A CALB, protein kinase C 99.6 1.1E-14 3.7E-19 139.0 12.7 106 13-161 27-139 (149)
27 3rdl_A Protein kinase C alpha 99.6 1.2E-14 4.2E-19 136.2 12.6 107 13-162 12-125 (137)
28 2z0u_A WW domain-containing pr 99.6 3.3E-15 1.1E-19 143.7 8.8 104 15-160 41-154 (155)
29 2d8k_A Synaptotagmin VII; exoc 99.6 1.5E-14 5.2E-19 136.6 13.2 105 15-161 24-135 (141)
30 1rh8_A Piccolo protein; beta-s 99.6 4.1E-15 1.4E-19 140.6 9.2 108 12-161 13-138 (142)
31 1byr_A Protein (endonuclease); 99.6 3.4E-15 1.2E-19 143.2 8.4 121 560-753 13-134 (155)
32 2bwq_A Regulating synaptic mem 99.5 2.2E-14 7.5E-19 133.1 12.0 101 16-159 17-128 (129)
33 1wfm_A Synaptotagmin XIII; C2 99.5 2.8E-14 9.6E-19 134.4 12.9 82 80-161 44-132 (138)
34 2chd_A Rabphilin-3A, exophilin 99.5 2.4E-14 8.2E-19 135.3 11.8 103 15-159 27-138 (142)
35 1v27_A Regulating synaptic mem 99.5 3E-14 1E-18 134.3 11.6 104 16-162 20-134 (141)
36 3fbk_A RGS3, RGP3, regulator o 99.5 5.6E-14 1.9E-18 134.7 12.8 106 14-162 24-138 (153)
37 1ugk_A Synaptotagmin IV, KIAA1 99.5 8.3E-14 2.8E-18 131.0 13.0 105 15-161 20-133 (138)
38 2enp_A B/K protein; C2 type 1, 99.5 3.5E-14 1.2E-18 135.0 10.2 109 16-160 25-140 (147)
39 3n5a_A Synaptotagmin-7; calciu 99.5 7.7E-14 2.6E-18 130.8 11.9 92 15-148 14-113 (138)
40 1tjx_A Similar to synaptotagmi 99.5 1.1E-13 3.7E-18 133.5 12.5 104 15-160 23-146 (159)
41 2dmg_A KIAA1228 protein; beta- 99.5 5.6E-14 1.9E-18 132.8 10.0 104 16-162 23-136 (142)
42 2cm5_A Rabphilin-3A; protein t 99.5 1.7E-13 5.7E-18 133.2 13.3 104 15-160 35-158 (166)
43 1w15_A Synaptotagmin IV; metal 99.5 2.4E-13 8.4E-18 130.1 13.3 102 15-160 28-137 (153)
44 3l9b_A Otoferlin; C2-domain, b 99.5 2.6E-13 8.9E-18 125.7 11.9 101 80-183 37-142 (144)
45 1dqv_A Synaptotagmin III; beta 99.5 3.5E-13 1.2E-17 143.5 13.8 124 16-182 19-150 (296)
46 2cjt_A UNC-13 homolog A, MUNC1 99.4 4.7E-13 1.6E-17 124.9 11.6 95 16-159 4-102 (131)
47 3jzy_A Intersectin 2; C2 domai 99.4 2.9E-12 1E-16 146.7 14.1 116 16-180 386-507 (510)
48 4gel_A Mitochondrial cardiolip 99.4 7.8E-13 2.7E-17 134.5 8.1 139 560-753 57-195 (220)
49 2cjs_A UNC-13 homolog A, MUNC1 99.3 4.6E-12 1.6E-16 123.2 12.7 66 80-149 32-99 (167)
50 3nsj_A Perforin-1; pore formin 99.3 6.1E-12 2.1E-16 143.5 15.5 106 16-178 393-501 (540)
51 1djx_A PLC-D1, phosphoinositid 99.3 6.8E-12 2.3E-16 146.1 13.9 122 15-180 495-623 (624)
52 3bxj_A RAS GTPase-activating p 99.3 4E-13 1.4E-17 152.5 2.0 126 14-186 8-162 (483)
53 2r83_A Synaptotagmin-1; C2A-C2 99.3 2.1E-11 7.1E-16 128.7 12.8 103 16-160 149-271 (284)
54 3hsi_A Phosphatidylserine synt 99.3 1.2E-11 4E-16 139.0 11.3 148 241-460 257-420 (458)
55 1cjy_A CPLA2, protein (cytosol 99.3 9.8E-12 3.4E-16 146.1 11.1 103 15-159 16-124 (749)
56 1xdp_A Polyphosphate kinase; P 99.2 2.4E-11 8.1E-16 141.8 9.0 119 564-753 350-480 (687)
57 1dqv_A Synaptotagmin III; beta 99.2 1E-11 3.5E-16 132.2 5.1 103 16-161 151-261 (296)
58 1v0w_A Phospholipase D; hydrol 99.0 4E-10 1.4E-14 128.8 11.2 153 242-460 314-492 (506)
59 1yrk_A NPKC-delta, protein kin 99.0 7.3E-09 2.5E-13 93.2 14.1 89 80-180 27-124 (126)
60 3pfq_A PKC-B, PKC-beta, protei 98.9 2.5E-09 8.4E-14 126.6 12.0 107 13-162 168-281 (674)
61 2enj_A NPKC-theta, protein kin 98.9 6.9E-09 2.4E-13 94.5 12.0 91 80-182 32-131 (138)
62 3ohm_B 1-phosphatidylinositol- 98.9 4.6E-09 1.6E-13 125.4 12.3 96 80-182 742-846 (885)
63 3qr0_A Phospholipase C-beta (P 98.9 7.8E-09 2.7E-13 122.8 13.5 114 16-182 649-772 (816)
64 2zkm_X 1-phosphatidylinositol- 98.9 7.4E-09 2.5E-13 123.5 13.2 113 15-180 676-798 (799)
65 2o8r_A Polyphosphate kinase; s 98.5 3.2E-07 1.1E-11 106.4 10.1 120 563-753 354-487 (705)
66 3qph_A TRMB, A global transcri 97.2 0.00014 4.7E-09 78.4 3.7 110 559-752 117-230 (342)
67 3qph_A TRMB, A global transcri 96.7 0.0016 5.5E-08 70.0 6.1 48 241-305 118-165 (342)
68 2f5t_X Archaeal transcriptiona 94.0 0.07 2.4E-06 53.9 6.5 49 241-306 9-57 (233)
69 2c1l_A Restriction endonucleas 94.0 0.083 2.8E-06 52.6 6.5 41 709-751 102-145 (358)
70 2c1l_A Restriction endonucleas 85.7 3.9 0.00013 40.8 9.9 101 284-449 50-150 (358)
71 3l4c_A Dedicator of cytokinesi 81.1 11 0.00038 37.2 11.2 40 92-131 77-119 (220)
72 2f5t_X Archaeal transcriptiona 73.5 6.9 0.00024 39.2 7.4 51 559-629 8-58 (233)
73 2yrb_A Protein fantom; beta sa 64.7 39 0.0013 31.4 9.9 97 83-181 45-150 (156)
74 2wxf_A Phosphatidylinositol-4, 56.9 41 0.0014 40.5 10.8 68 80-147 235-324 (940)
75 1q32_A TDP1P;, tyrosyl-DNA pho 53.8 4.4 0.00015 45.7 1.7 41 707-747 427-487 (544)
76 3hhm_A Phosphatidylinositol-4, 40.9 92 0.0031 38.0 10.3 68 80-148 375-456 (1091)
77 1e7u_A Phosphatidylinositol 3- 35.6 1.1E+02 0.0039 36.8 10.0 69 80-148 238-331 (961)
78 1jy1_A TDP1, tyrosyl-DNA phosp 29.7 17 0.00059 40.1 1.5 33 363-400 115-147 (464)
79 2y3a_A Phosphatidylinositol-4, 24.0 66 0.0023 39.3 5.3 50 80-129 371-429 (1092)
80 3sq7_A Tyrosyl-DNA phosphodies 21.7 30 0.001 38.1 1.6 45 708-752 351-415 (470)
81 2l82_A Designed protein OR32; 21.6 98 0.0034 26.5 4.3 45 285-343 90-134 (162)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=5.4e-38 Score=360.20 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=113.4
Q ss_pred cchHHHHHHHHHhccceEEEEEeec-ccceEEeecCCCCCCCCCCCcHHHHHHHHHhcC--CEEEEEEeCCCCccCcccc
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSV-FHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGV 317 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~-~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rG--V~VriLv~D~~gs~~~~~~ 317 (767)
+++|++|+++|++||++|+|++|+| .++ ..| .+|.++|++||+|| |+||||+ |.+|+.....
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d-----------~~g--~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~~- 129 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNG-----------AFQ--DAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV- 129 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCH-----------HHH--HHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC-
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCC-----------hHH--HHHHHHHHHHHhCCCCcEEEEEE-eCcccccccc-
Confidence 7889999999999999999999994 664 122 79999999999999 9999996 8866543100
Q ss_pred ccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcc
Q 004222 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (767)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r 397 (767)
....+.+.|+++|+++... .+.....+ .. ....+.|||+|++|||++ +||+||+|+++++
T Consensus 130 --------~~~~~~~~L~~~g~~~~~~--~~~~~~~~-~~-~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~ 189 (506)
T 1v0w_A 130 --------IPSKYRDELTAKLGKAAEN--ITLNVASM-TT-SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDD 189 (506)
T ss_dssp --------HHHHHHHHHHHHHGGGGGG--EEEEEEEE-CS-BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred --------CCHHHHHHHHhcccceeec--Cccccccc-cc-cCCccccceeeEEEECCc--------EEEeeccccCccc
Confidence 1234566677666543210 00000000 00 001124899999999999 9999999996556
Q ss_pred cCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhcc
Q 004222 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (767)
Q Consensus 398 ~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~~~~ 461 (767)
|.+. ..+|||++++++||+|.+++..|.++|+....
T Consensus 190 y~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~ 225 (506)
T 1v0w_A 190 YLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQ 225 (506)
T ss_dssp HTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred cccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhcc
Confidence 6431 13799999999999999999999999987653
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=100.00 E-value=2.3e-37 Score=348.05 Aligned_cols=350 Identities=14% Similarity=0.095 Sum_probs=216.1
Q ss_pred cccCCceeEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcH
Q 004222 208 LRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTL 287 (767)
Q Consensus 208 ~~~gn~v~~~~~~~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l 287 (767)
...||.|++|.+| +++|++++++|++|+++|+|++|+|.+| +.| ..|
T Consensus 23 ~~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~d-----------~~g--~~l 69 (458)
T 3hsi_A 23 ALQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQKD-----------EAG--QEI 69 (458)
T ss_dssp ECCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCSS-----------HHH--HHH
T ss_pred cccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEecC-----------cHH--HHH
Confidence 4568999999998 7899999999999999999999999886 223 799
Q ss_pred HHHHHHHHhc--CCEEEEEEeCCC-------CccCccccccCcccccCcHHHHhhhcCCC--ceEE--ecccccCcccch
Q 004222 288 GELLKYKSEE--GVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKHSS--VNCV--LAPRYASSKLSY 354 (767)
Q Consensus 288 ~~~L~~aa~r--GV~VriLv~D~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~~g--i~v~--~~~~~~~~~~~~ 354 (767)
.++|.+||+| ||+||||+ |+. |+... ..+..+...|.++| |+|. +++ .|..
T Consensus 70 ~~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~~~~----------~~~~~~~~~L~~~g~nv~v~~~~f~-~p~~---- 133 (458)
T 3hsi_A 70 LDEIYRVKQENPHLDVKVLI-DWHRAQRNLLGAEKS----------ATNADWYCEQRQTYQLPDDPNMFFG-VPIN---- 133 (458)
T ss_dssp HHHHHHHHHHSTTCEEEEEE-ETTGGGSCCC---------------CCHHHHHHHHHHHHTCTTCCCCEEE-ECSS----
T ss_pred HHHHHHHHhcCCCCEEEEEE-ECccccccccccccc----------cccHHHHHHHHhhCCCceEeeeecC-Cccc----
Confidence 9999999999 99999997 883 33221 01134556665555 7766 543 1211
Q ss_pred hhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCce
Q 004222 355 FKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH 434 (767)
Q Consensus 355 ~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~ 434 (767)
....+.|+|+|++||||+ + ++||+||+++++... .....|+
T Consensus 134 ----~~~~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~--------------------------~~~~~dr 174 (458)
T 3hsi_A 134 ----TREVFGVLHVKGFVFDDT--------V-LYSGASINNVYLHQF--------------------------EKYRYDR 174 (458)
T ss_dssp ----SSGGGCCEECCEEEETTE--------E-EEESCCBSTTTTTCS--------------------------SCCEECC
T ss_pred ----cccccCcceeeEEEECCC--------E-EEEeeecCHHHhcCC--------------------------cccCcch
Confidence 123567899999999997 8 556699999554210 1123578
Q ss_pred eeeeEEeChHHHHHHHHH--HHHHhhhccchhhhhhhccccccccch--hh-hccccccccCCcccccCCCccc-cCCCC
Q 004222 435 DLHCRLDGPAAYDVLINF--EQRWRKATKLTELTFKFKRVSHWRDDY--LI-KIGRISWILSPELSLKTNGTTI-VPRDD 508 (767)
Q Consensus 435 D~~vri~Gpav~dl~~~F--~~~W~~~~~~~~~~~~~~~~~~~~~~~--l~-~~~~~~~~~~p~~~~~~~~~~~-~p~~~ 508 (767)
| +.+.||.+.|....| ...|+...-.. ++. .|..+. .. ....+...+.+. ..+ ++.
T Consensus 175 d--~~i~g~~~~D~~~~~~~~~~~~g~~v~~-----l~~--~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~-- 236 (458)
T 3hsi_A 175 Y--QKITHAELADSMVNFINDYLLDFSAVYP-----LDV--TNRPRTKEIRGNIRAYRKDLAQN-------GEYSLKS-- 236 (458)
T ss_dssp E--EEEECHHHHHHHHHHHHHTTCCTTTCEE-----SSS--SCCCCGGGTHHHHHHHHHHHHHH-------CCCCCSS--
T ss_pred h--hhhcCchHHHHHHHHHHhhhhcCccchh-----hHH--HhcccchhhHHHHHHHHHhhhhc-------ccccccc--
Confidence 8 448999999999888 44565322110 000 010000 00 000000000000 000 010
Q ss_pred cccccccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccccCCccchhHHHHHHHHHHHhccceEEEecccccccc
Q 004222 509 NVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSS 588 (767)
Q Consensus 509 ~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~ 588 (767)
...+...+++.... + |.. .+..+...++++|.+|+++|+|++|||++.
T Consensus 237 --------~~~~~~~~~v~p~~--~-----~~~----------------~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~- 284 (458)
T 3hsi_A 237 --------AVKLPNVLSVSPLF--G-----LGA----------------SGNELNQVIEDLFLQVQKKLVICTPYFNFP- 284 (458)
T ss_dssp --------CBSSCSSCEEEEEE--E-----ESS----------------SSCHHHHHHHHHHHTCSSEEEEECSSSCCC-
T ss_pred --------cCCCCceEEEecCC--C-----CCC----------------chhHHHHHHHHHHHhcccEEEEEEeccCCC-
Confidence 00011123443211 1 110 135788999999999999999999999953
Q ss_pred CCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCC----CCCchhHHHHHHHHHHH--HHHHHH---HH
Q 004222 589 YAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD----PKTNTVQEILFWQSQTM--QMMYSV---VA 659 (767)
Q Consensus 589 ~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~----~d~~~~~~~~~~~~~~~--~~~~~~---~~ 659 (767)
. .+..+|..+++ |||+|+||+|....++ ++.+ ++.++...+ ...... -+
T Consensus 285 -----~-----------~~~~aL~~Aa~--rGV~VrIi~~~~~and~y~~~~~~----~~~~~~~~~lye~~~~~f~~~~ 342 (458)
T 3hsi_A 285 -----R-----------TLQHKIATLLE--NGKRVEIIVGDKVANDFYIPPEQP----FKMAGALPYLYESNLRRFCEKF 342 (458)
T ss_dssp -----H-----------HHHHHHHHHHT--TTCEEEEEEECGGGSTTCCCTTSC----CCGGGGHHHHHHHHHHHHHHHT
T ss_pred -----H-----------HHHHHHHHHHH--CCCeEEEEECCccccCCccCCcch----hhhhcchHHHHHHhhhhhHHHH
Confidence 2 45566666655 5599999999753221 1221 112222211 000000 12
Q ss_pred HHHHHcc-cCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEEeeeEeeeccCCcCCcCCCCC
Q 004222 660 QELREMQ-VDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGS 738 (767)
Q Consensus 660 ~~L~~~G-v~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n 738 (767)
+.|.++| ++ +++|++ .+.++|+|+|||||++++|||+|||.||+.
T Consensus 343 ~~l~~~G~i~------V~i~~~--------------------------~~~~lHaK~~vvD~~~~~vGS~N~d~RS~~-- 388 (458)
T 3hsi_A 343 ETQIESGQLV------VRLWRD--------------------------GDNTYHLKGVWVDDRYILLTGNNLNPRAWR-- 388 (458)
T ss_dssp HHHHHHTSEE------EEEECB--------------------------TTBEECCCEEEETTTEEEEECCCCSHHHHH--
T ss_pred HHHHhCCCeE------EEEEec--------------------------CCCceeEEEEEECCeEEEecCCCCCcchhh--
Confidence 4566777 22 123532 246999999999999999999999999998
Q ss_pred CCccceeeecCCc
Q 004222 739 KDTEIAMGSYQPH 751 (767)
Q Consensus 739 ~d~E~~v~i~~p~ 751 (767)
.|+|++++|+|++
T Consensus 389 lN~E~~~~i~~~~ 401 (458)
T 3hsi_A 389 LDAENGLLIYDPQ 401 (458)
T ss_dssp TCEEEEEEEECTT
T ss_pred hCceeEEEEeCCc
Confidence 4599999999997
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.93 E-value=1.2e-25 Score=261.74 Aligned_cols=272 Identities=15% Similarity=0.155 Sum_probs=185.5
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCcc
Q 004222 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~-----~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~ 315 (767)
.+.|+.++++|++|++ +|+|+.|.+.++ ..+.++|++||+|||+|+||+ |..+....
T Consensus 346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~d----------------~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~- 407 (687)
T 1xdp_A 346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAKD----------------SRIIDSMIHAAHNGKKVTVVV-ELQARFDE- 407 (687)
T ss_dssp TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCTT----------------CHHHHHHHHHHHTTCEEEEEE-CTTCSSTT-
T ss_pred hhhhhhHHHHHHHHhhCCcceEEEEEeeeecCc----------------HHHHHHHHHHHhcCCEEEEEE-CCCcccch-
Confidence 5568899999999997 999988876554 799999999999999999997 88763210
Q ss_pred ccccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceE---EEEcccc
Q 004222 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT---AFIGGID 392 (767)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~---a~vGG~N 392 (767)
..+....+.|.++||+|+++.. ++++|+|++|||++ ++..+ +++||.|
T Consensus 408 ---------~~n~~~~~~L~~aGV~V~~~~~----------------~~k~H~Ki~VID~r----e~~~i~~~a~iGS~N 458 (687)
T 1xdp_A 408 ---------EANIHWAKRLTEAGVHVIFSAP----------------GLKIHAKLFLISRK----ENGEVVRYAHIGTGN 458 (687)
T ss_dssp ---------TTTTTTTHHHHHHTCEEEECCT----------------TCEECCEEEEEEEE----ETTEEEEEEEEESSC
T ss_pred ---------hhHHHHHHHHHHCCCEEEEecC----------------CccccceEEEEEec----cCCeEEEEEEEeCCc
Confidence 1122456778889999976421 24699999999952 00016 9999999
Q ss_pred CCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHHhhhccchhhhhhhcc
Q 004222 393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKR 471 (767)
Q Consensus 393 i~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp-av~dl~~~F~~~W~~~~~~~~~~~~~~~ 471 (767)
+++..+ ..|+|+++++.|| ++.++...|..+|..+....
T Consensus 459 ~d~rs~--------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~-------- 498 (687)
T 1xdp_A 459 FNEKTA--------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVT-------- 498 (687)
T ss_dssp SCTTGG--------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCC--------
T ss_pred CCcchh--------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhccccc--------
Confidence 988222 3589999999987 68999999999997633210
Q ss_pred ccccccchhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCcccccccccc
Q 004222 472 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 551 (767)
Q Consensus 472 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~ 551 (767)
| . +++.+ |..
T Consensus 499 ---~--------------------------------------------~----~l~~s---------P~~---------- 508 (687)
T 1xdp_A 499 ---F--------------------------------------------D----YLMVS---------PQN---------- 508 (687)
T ss_dssp ---C--------------------------------------------S----SCEEE---------TTS----------
T ss_pred ---h--------------------------------------------h----heeeC---------Cch----------
Confidence 0 0 01111 211
Q ss_pred ccCCccchhHHHHHHHHHHHhccc----eEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEe
Q 004222 552 CAKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII 627 (767)
Q Consensus 552 ~~~~~~~~~~i~~~~~~~I~~A~~----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Ill 627 (767)
....+...+...|+.|++ +|+|.++|+ |+. .+..+|.+|++ +||+|+||+
T Consensus 509 ------~~~~l~~~I~~ei~~A~~g~~~~I~i~~~~l-------pD~-----------~ii~AL~~Aa~--rGV~VrLiv 562 (687)
T 1xdp_A 509 ------SRRLLYEMVDREIANAQQGLPSGITLKLNNL-------VDK-----------GLVDRLYAASS--SGVPVNLLV 562 (687)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCCCCEEEEESCB-------CCH-----------HHHHHHHHHHH--TTCCEEEEE
T ss_pred ------hhHHHHHHHHHHHHHHHcCCCCEEEEEeCCC-------CCH-----------HHHHHHHHHHH--CCCEEEEEE
Confidence 123455566667888887 899999884 222 34556666655 559999999
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCcc
Q 004222 628 PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRF 707 (767)
Q Consensus 628 p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (767)
...-. | ..|+.- ..+.+.+..+ +.
T Consensus 563 rg~c~-----------------------------l-~pgvp~-~sdni~V~s~-----------------------~~-- 586 (687)
T 1xdp_A 563 RGMCS-----------------------------L-IPNLEG-ISDNIRAISI-----------------------VD-- 586 (687)
T ss_dssp SSCBC-----------------------------B-CTTCTT-TSTTEEEEEE-----------------------CS--
T ss_pred ecccc-----------------------------c-CCCCCC-CCCCEEEEEe-----------------------hh--
Confidence 64200 0 011110 0001111111 00
Q ss_pred ceEEeeeEEEE---eeeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 708 MIYVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 708 ~~~~HsK~~IV---Dd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
...-|+|++.. ||.+++||||||+.|||. +|.|+++.|+||+++
T Consensus 587 r~Leh~rI~~f~~~dd~~~~IGSAN~d~Rsl~--~n~Ev~~~I~d~~~~ 633 (687)
T 1xdp_A 587 RYLEHDRVYIFENGGDKKVYLSSADWMTRNID--YRIEVATPLLDPRLK 633 (687)
T ss_dssp SSEECCCEEEECGGGSCEEEEESCCBSHHHHH--SEEEEEEECCSHHHH
T ss_pred HHhhCCeEEEEcCCCCCEEEEEcCccchhhhh--hheeeeEEecCHHHH
Confidence 12348888888 788999999999999998 459999999999875
No 4
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.91 E-value=1.3e-23 Score=242.69 Aligned_cols=274 Identities=13% Similarity=0.128 Sum_probs=187.8
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCcc
Q 004222 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~-----~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~ 315 (767)
.+.|+.++++|++|++ +|+++.|++..+ ..|.++|++||++||+|++|+ | .++...
T Consensus 351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~d----------------s~Iv~ALi~AA~rGv~V~vLv-e-l~arfd- 411 (705)
T 2o8r_A 351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAEN----------------SSIISALEAAAQSGKKVSVFV-E-LKARFD- 411 (705)
T ss_dssp TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCSC----------------CHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred hHhHHHHHHHHHHhccCCCceEEEEEEEEEcCC----------------HHHHHHHHHHHHCCCEEEEEE-e-CCCCcc-
Confidence 6679999999999999 999999988654 799999999999999999997 8 665331
Q ss_pred ccccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccC--CCCCCcceEEEEccccC
Q 004222 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ--ASGNNRKITAFIGGIDL 393 (767)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~--~~~~~~~~~a~vGG~Ni 393 (767)
...+....+.|+++||+|.+. + .++++|+|++|||++ -.|. =...+.+|.-|+
T Consensus 412 --------ee~ni~wa~~Le~aGv~Vv~g--~--------------~~lk~H~Ki~lIdrr~~~~g~-~~~y~~igtGN~ 466 (705)
T 2o8r_A 412 --------EENNLRLSERMRRSGIRIVYS--M--------------PGLKVHAKTALILYHTPAGER-PQGIALLSTGNF 466 (705)
T ss_dssp -----------CHHHHHHHHHHTCEEEEC--C--------------TTCCBCCCEEEEEECCCSSSC-CCEEEEEESSCS
T ss_pred --------hhhhHHHHHHHHHCCCEEEEc--c--------------CCCCceeEEEEEecccccCCc-eeEEEeccccce
Confidence 011346778899999998752 1 246799999999986 1111 123455565555
Q ss_pred CCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHHhhhccchhhhhhhccc
Q 004222 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKRV 472 (767)
Q Consensus 394 ~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp-av~dl~~~F~~~W~~~~~~~~~~~~~~~~ 472 (767)
.+. ...-|.|+++...+| ++.+++..|...|.....
T Consensus 467 n~~--------------------------------tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~~----------- 503 (705)
T 2o8r_A 467 NET--------------------------------TARIYSDTTLMTANTDIVHDVYRLFRILDGDPEP----------- 503 (705)
T ss_dssp SCC--------------------------------CSSCEEEEEEEECCHHHHHHHHHHHHHHTTCCCC-----------
T ss_pred eee--------------------------------EEEEEeeeeeeecChHHHHHHHHHHHHHhCCCCC-----------
Confidence 441 013488999999887 569999999777642100
Q ss_pred cccccchhhhccccccccCCcccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCccccccccccc
Q 004222 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (767)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~p~~~~~~~~~~~~~ 552 (767)
. .. .|++.+ |...
T Consensus 504 ---------------------------------~--------------~~-~~l~~s---------P~~~---------- 516 (705)
T 2o8r_A 504 ---------------------------------A--------------RF-SRLLVA---------RYNM---------- 516 (705)
T ss_dssp ---------------------------------S--------------CC-SSCEET---------TTTH----------
T ss_pred ---------------------------------C--------------Cc-eEEEEC---------CchH----------
Confidence 0 00 123321 3221
Q ss_pred cCCccchhHHHHHHHHHHHhccc----eEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEec
Q 004222 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 628 (767)
Q Consensus 553 ~~~~~~~~~i~~~~~~~I~~A~~----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp 628 (767)
...+...+...|..|++ +|+|.++| + ||. .+..+|.+|++ +||+|+||+.
T Consensus 517 ------~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~-l------~D~-----------~ii~aL~~As~--~GV~V~LIVR 570 (705)
T 2o8r_A 517 ------GEAITNLIEREIENVKRGKRGYMLLKMNG-L------QDK-----------NVITQLYRASE--AGVEIDLIVR 570 (705)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCCEEEEEESC-B------CCH-----------HHHHHHHHHHH--TTCEEEEEES
T ss_pred ------HHHHHHHHHHHHHHHhcCCCCEEEEEcCC-C------CCH-----------HHHHHHHHHHH--CCCeEEEEEc
Confidence 46789999999999999 99999998 5 332 45566666655 4599999993
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccc
Q 004222 629 MWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFM 708 (767)
Q Consensus 629 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (767)
+.-.-.|. .. + ...+. +..+ ++ .
T Consensus 571 GiC~L~Pg----------------------v~-~-sdni~--------V~Si-----------------------vg--r 593 (705)
T 2o8r_A 571 GICCLVPD----------------------MP-Q-SRNIR--------VTRL-----------------------VD--M 593 (705)
T ss_dssp SCBCSCCS----------------------SG-G-GTTEE--------EEEC-----------------------CS--S
T ss_pred cccccCCC----------------------CC-C-CCCeE--------EEee-----------------------HH--H
Confidence 20000000 00 0 11111 1111 00 1
Q ss_pred eEEeeeEEEE---eeeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 709 IYVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 709 ~~~HsK~~IV---Dd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
..-|+|+++. ||++++||||||+.|||. ++.|+++.|+||+++
T Consensus 594 ~Leh~RIy~f~~gd~~~~~IGSAn~m~Rnl~--~r~Ev~~~i~d~~~~ 639 (705)
T 2o8r_A 594 YLEHSRIWCFHNGGKEEVFISSADWMKRNLY--NRIETACPVLDPTLR 639 (705)
T ss_dssp SEECCCEEEECGGGSCEEEEESCCBCHHHHH--TSBCEEEECCSHHHH
T ss_pred HHhcCEEEEEECCCCcEEEEeccccchhhhh--heeEEEEEEcCHHHH
Confidence 2458888888 889999999999999998 559999999999885
No 5
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.79 E-value=2.2e-19 Score=179.82 Aligned_cols=133 Identities=14% Similarity=0.190 Sum_probs=103.1
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
++.|..|+++|++|+++|+|++|+|.. ..|.++|++|++|||+||||+ |......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~-----------------~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS-----------------PQLGRAVQLLHQRGVRVRVIT-DCDYMAL------- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC-----------------HHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence 778999999999999999999998854 589999999999999999997 8642211
Q ss_pred cccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCC
Q 004222 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (767)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (767)
.......|..+||+|+..... ..+|+|++|||++ ++++||+|++...+.
T Consensus 100 ------~~~~~~~l~~~gi~v~~~~~~----------------~~~H~K~~viD~~--------~~~~GS~N~t~~~~~- 148 (196)
T 4ggj_A 100 ------NGSQIGLLRKAGIQVRHDQDL----------------GYMHHKFAIVDKK--------VLITGSLNWTTQAIQ- 148 (196)
T ss_dssp -------CCHHHHHHHTTCEEEECCSS----------------SCCCCEEEEETTT--------EEEEESCCBCHHHHH-
T ss_pred ------cHHHHHHHHhcCCCccccccc----------------ccccCcEEEEcce--------EEEecCccCChhhhc-
Confidence 112456688899999864321 2389999999999 999999999883331
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHHhhhc
Q 004222 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (767)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp-av~dl~~~F~~~W~~~~ 460 (767)
..| +..+.+.++ +|..+.+.|..+|+...
T Consensus 149 ------------------------------~n~-E~~~~i~~~~~~~~~~~~F~~~W~~~~ 178 (196)
T 4ggj_A 149 ------------------------------NNR-ENVLIMEDTEYVRLFLEEFERIWEEFD 178 (196)
T ss_dssp ------------------------------HCC-EEEEEECCHHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------ccc-eeEEEEECHHHHHHHHHHHHHHHHhCC
Confidence 112 445555555 78999999999998754
No 6
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=167.54 Aligned_cols=129 Identities=22% Similarity=0.380 Sum_probs=106.1
Q ss_pred eeEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC
Q 004222 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (767)
Q Consensus 11 ~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~ 90 (767)
++..+.|.|+|+|++|++|+++|..++++ +|. .....+||||+|.+++
T Consensus 23 ~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~------------------------------~~~g~sDPYv~v~l~~ 70 (157)
T 2fk9_A 23 GTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFK------------------------------KGHQLLDPYLTVSVDQ 70 (157)
T ss_dssp -CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSS------------------------------SSCCCCCEEEEEEETT
T ss_pred hhccCccEEEEEEEEEECCCCcccccccc--ccc------------------------------cCCCCCCeEEEEEECC
Confidence 45688999999999999999888543311 111 0112389999999998
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCC----ceeEEEEEccCCCCC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSGS 165 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~----~~~~~w~~l~~~~~~ 165 (767)
..+.||+++++|+||+|||+|.|.+.. ...|+|+|||+|.++ +++||.+.|+|.++..+ ...+.|++|
T Consensus 71 ~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L------ 143 (157)
T 2fk9_A 71 VRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL------ 143 (157)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEEC------
T ss_pred EeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEEC------
Confidence 888899999999999999999999865 457999999999998 89999999999998854 678999999
Q ss_pred CCCCCceEEEEEEEE
Q 004222 166 PPKPGASIQLELKFT 180 (767)
Q Consensus 166 ~~~~~g~i~l~l~y~ 180 (767)
++.|+|+|+++|.
T Consensus 144 --~~~G~i~l~l~~~ 156 (157)
T 2fk9_A 144 --EPEGKVFVVITLT 156 (157)
T ss_dssp --BSSCEEEEEEEEC
T ss_pred --CCCcEEEEEEEEE
Confidence 2369999999874
No 7
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.75 E-value=9.9e-18 Score=157.69 Aligned_cols=130 Identities=17% Similarity=0.391 Sum_probs=106.1
Q ss_pred EeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCee
Q 004222 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (767)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~ 92 (767)
.++.|.|+|+|++|++|++++..+.+. +. . +.+...+||||++.+++..
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~---~g--------------------~--------~~~~~~~DPyv~v~l~~~~ 50 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRDA---VG--------------------P--------RPQTFLLDPYIALNVDDSR 50 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC----CC--------------------S--------SCCCCCCCEEEEEEETTEE
T ss_pred cccceEEEEEEEeCcCCCCcccccccc---cc--------------------c--------ccCCcCcCcEEEEEECCeE
Confidence 367899999999999999887543210 00 0 0112238999999998888
Q ss_pred eeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCC--ceeEEEEEccCCCCCCCCC
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPKP 169 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~--~~~~~w~~l~~~~~~~~~~ 169 (767)
+.+|+++++|.||+|||+|.|.+... ..|.|+|||+|.++ +++||.+.|++.++..+ ...+.|++| ++
T Consensus 51 ~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L--------~~ 121 (136)
T 1gmi_A 51 IGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL--------EP 121 (136)
T ss_dssp EEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC--------BS
T ss_pred eeeeeEECCCcCCccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc--------CC
Confidence 78999999999999999999998765 67999999999988 89999999999999853 346899998 24
Q ss_pred CceEEEEEEEEec
Q 004222 170 GASIQLELKFTPC 182 (767)
Q Consensus 170 ~g~i~l~l~y~p~ 182 (767)
.|+|+|+++|.+.
T Consensus 122 ~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 122 EGKVYVIIDLSGS 134 (136)
T ss_dssp SCEEEEEEEEEEE
T ss_pred CeEEEEEEEEEec
Confidence 7999999999875
No 8
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.73 E-value=2.3e-17 Score=158.30 Aligned_cols=124 Identities=21% Similarity=0.370 Sum_probs=100.1
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
..+.|+|+|++|++|+.++..+. +||||++.+..
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 55 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMNG 55 (153)
T ss_dssp TCEEEEEEEEEEESCC-------------------------------------------------CCEEEEEEEEETTTE
T ss_pred CccEEEEEEEEeeCCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 45789999999999998886655 89999999963
Q ss_pred -eeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCce------eEEEEEccCC
Q 004222 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAP 162 (767)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~------~~~w~~l~~~ 162 (767)
....+|+++++|.||+|||+|.|.+......|.|+|||++.++ +++||++.|+|.++..+.. ...|++|...
T Consensus 56 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~ 135 (153)
T 3b7y_A 56 VLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR 135 (153)
T ss_dssp EEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS
T ss_pred cceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc
Confidence 3567999999999999999999999887778999999999997 8999999999999975443 2589999543
Q ss_pred CCCCCCCCceEEEEEEEEe
Q 004222 163 SGSPPKPGASIQLELKFTP 181 (767)
Q Consensus 163 ~~~~~~~~g~i~l~l~y~p 181 (767)
.+ ..+..|+|+|+++|.|
T Consensus 136 ~~-~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 136 SH-KSRVKGYLRLKMTYLP 153 (153)
T ss_dssp ST-TCCCCSEEEEEEEECC
T ss_pred cC-CCCcceEEEEEEEEeC
Confidence 32 2356899999999987
No 9
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=154.55 Aligned_cols=124 Identities=28% Similarity=0.484 Sum_probs=106.5
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (767)
..|.|.|+|++|++|+.++. +. +||||++.+.+.. .
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------------------~dpyv~v~~~~~~-~ 40 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK------------------------------------------PDPIVSVIFKDEK-K 40 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC------------------------------------------CCEEEEEECSSCE-E
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC------------------------------------------CCeEEEEEECCEe-E
Confidence 46899999999999998886 54 8999999998755 7
Q ss_pred eeccccCCCCCeeeceEEEeecCC----CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEE---ccCCCCCC
Q 004222 95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD---IIAPSGSP 166 (767)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~---l~~~~~~~ 166 (767)
+|++++++.||+|||+|.|.+..+ ...|.|+|||+|.++ +++||.+.|+|.++..+.....|++ |....+.
T Consensus 41 kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~- 119 (140)
T 2dmh_A 41 KTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ- 119 (140)
T ss_dssp ECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC-
T ss_pred EeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC-
Confidence 999999999999999999998753 456999999999997 8999999999999988888889988 6444332
Q ss_pred CCCCceEEEEEEEEecCC
Q 004222 167 PKPGASIQLELKFTPCDK 184 (767)
Q Consensus 167 ~~~~g~i~l~l~y~p~~~ 184 (767)
...|+|+|+++|.|...
T Consensus 120 -~~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 120 -DTGATIDLVIGYDPPSG 136 (140)
T ss_dssp -EEEEEEEEEEEECCCBS
T ss_pred -CCCCEEEEEEEEECCCC
Confidence 24699999999999644
No 10
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.73 E-value=1.6e-17 Score=156.05 Aligned_cols=124 Identities=24% Similarity=0.484 Sum_probs=107.8
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeee
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (767)
...|.|+|+|++|++|+.++..+. +||||+|.+.+..
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~- 43 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD- 43 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-
T ss_pred CCcEEEEEEEEeccCCCCcccCCC------------------------------------------cCceEEEEECCcc-
Confidence 356899999999999998886655 8999999998765
Q ss_pred eeecccc-CCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccc-cCCceeEEEEEccCCCCCCCCCC
Q 004222 94 ARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTI-ATGELISRWYDIIAPSGSPPKPG 170 (767)
Q Consensus 94 ~~T~~~~-~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~-~~~~~~~~w~~l~~~~~~~~~~~ 170 (767)
.+|++++ ++.||+|||+|.|.+......|.|+|||++.++ +++||.+.|+|.++ ..+.....|++|. ..+ +..
T Consensus 44 ~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~---~~~ 119 (136)
T 1wfj_A 44 QKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDE---EYK 119 (136)
T ss_dssp EECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETT---EEE
T ss_pred ceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCC---ccC
Confidence 5999998 899999999999999986777999999999987 89999999999999 4566678899996 322 468
Q ss_pred ceEEEEEEEEecCC
Q 004222 171 ASIQLELKFTPCDK 184 (767)
Q Consensus 171 g~i~l~l~y~p~~~ 184 (767)
|+|+|+++|.|...
T Consensus 120 G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 120 GEIWVALSFKPSGP 133 (136)
T ss_dssp EEEEEEEEEEECCS
T ss_pred EEEEEEEEEEeCCC
Confidence 99999999999754
No 11
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.72 E-value=1.3e-16 Score=152.18 Aligned_cols=122 Identities=23% Similarity=0.448 Sum_probs=103.6
Q ss_pred EeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCee
Q 004222 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (767)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~ 92 (767)
..+.|.|.|+|++|++|+.++..+. +||||++.++...
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~ 50 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGS------------------------------------------SDPYVTVQVGKTK 50 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE
T ss_pred cccccEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEECCEE
Confidence 3567999999999999998887665 9999999998754
Q ss_pred eeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCC-----------C-CceeEEEEcccccccCCceeEEEEEcc
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-----------G-AQIIGTAAIPAHTIATGELISRWYDII 160 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~-----------~-~~~iG~~~~~l~~~~~~~~~~~w~~l~ 160 (767)
.+|+++++|.||+|||+|.|.+..+...|.|+|||+|.+ + +++||.+.++|.++. .....|++|.
T Consensus 51 -~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~ 127 (148)
T 3kwu_A 51 -KRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLD 127 (148)
T ss_dssp -EECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECB
T ss_pred -EECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcc
Confidence 699999999999999999999988777899999999986 4 999999999999983 4567999995
Q ss_pred CCCCCCCCCCceEEEEEEEE
Q 004222 161 APSGSPPKPGASIQLELKFT 180 (767)
Q Consensus 161 ~~~~~~~~~~g~i~l~l~y~ 180 (767)
.. +......|+|+|+++|.
T Consensus 128 ~~-~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 128 KR-TDKSAVSGAIRLHISVE 146 (148)
T ss_dssp CS-STTCCCCCEEEEEEEEE
T ss_pred cC-CCCCCCceEEEEEEEEE
Confidence 33 33334679999999985
No 12
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.72 E-value=2.9e-17 Score=157.75 Aligned_cols=135 Identities=16% Similarity=0.257 Sum_probs=107.9
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
+++++.++++|++|+++|+|++|+|.. ..|.++|.+|++|||+||||+ |..++...
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~-----------------~~i~~aL~~a~~rGV~Vril~-~~~~~~~~------ 68 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA-----------------PDIMKALVAAKKRGVDVKIVI-DERGNTGR------ 68 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC-----------------HHHHHHHHHHHHTTCEEEEEE-ESTTCCSH------
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC-----------------HHHHHHHHHHHHCCCEEEEEE-eCcccccc------
Confidence 467899999999999999999998832 589999999999999999997 76643210
Q ss_pred cccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEEEccccCCCcccCC
Q 004222 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (767)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (767)
......+.|.++|++++.+... .++|+|++|||++ ++++||+|++...+
T Consensus 69 -----~~~~~~~~L~~~gv~v~~~~~~----------------~~~H~K~~iiD~~--------~~~iGS~N~~~~~~-- 117 (155)
T 1byr_A 69 -----ASIAAMNYIANSGIPLRTDSNF----------------PIQHDKVIIVDNV--------TVETGSFNFTKAAE-- 117 (155)
T ss_dssp -----HHHHHHHHHHHTTCCEEEECSS----------------SCCCCCEEEETTT--------EEEEESCCBSHHHH--
T ss_pred -----ccHHHHHHHHHCCCeEEEcCCc----------------ccccceEEEECCC--------EEEEECCCCCcccc--
Confidence 1234567788899998864321 1389999999999 99999999987222
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh--HHHHHHHHHHHHHhhhc
Q 004222 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKAT 460 (767)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp--av~dl~~~F~~~W~~~~ 460 (767)
..|++..+.+.|+ .+.++...|.+.|..+.
T Consensus 118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 2467899999994 78999999999998754
No 13
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.71 E-value=6.2e-17 Score=151.49 Aligned_cols=122 Identities=25% Similarity=0.374 Sum_probs=105.5
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeee
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (767)
...|.|.|+|++|++|+.++..+. +||||++.+.+..
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~- 46 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLLELGNDR- 46 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEEEETTEE-
T ss_pred CCceEEEEEEEeeECCCCCCCCCC------------------------------------------cCeEEEEEECCEE-
Confidence 456899999999999998886665 9999999998865
Q ss_pred eeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCce
Q 004222 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS 172 (767)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~ 172 (767)
.+|++++++.||+|||+|.|.+......|.|+|||++.++ +++||++.+++.++..+. ..|++|....... ...|+
T Consensus 47 ~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~ 123 (133)
T 2ep6_A 47 LQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGV 123 (133)
T ss_dssp EECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSE
T ss_pred EEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceE
Confidence 6999999999999999999999887778999999999997 999999999999998654 4899996544322 56899
Q ss_pred EEEEEEEEe
Q 004222 173 IQLELKFTP 181 (767)
Q Consensus 173 i~l~l~y~p 181 (767)
|+|+++|..
T Consensus 124 i~l~i~~~~ 132 (133)
T 2ep6_A 124 IYLEMDLIY 132 (133)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 999999864
No 14
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.70 E-value=1e-16 Score=157.62 Aligned_cols=124 Identities=21% Similarity=0.371 Sum_probs=98.2
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-----
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----- 90 (767)
.|.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~ 44 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMSGI 44 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC------------------------------------------CCEEEEEEEEETTTEE
T ss_pred cEEEEEEEEEeeCCCCcCCCCC------------------------------------------cCcEEEEEEECCCCCc
Confidence 4889999999999998887665 99999999963
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCcee-E-----EEEEccCCC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-S-----RWYDIIAPS 163 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~-~-----~w~~l~~~~ 163 (767)
..+.+|++++++.||+|||.|.|.+......|.|+|||++.++ +++||.+.|+|.++..+... . .|++|....
T Consensus 45 ~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~ 124 (176)
T 3m7f_B 45 LTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS 124 (176)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS
T ss_pred ccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC
Confidence 1457999999999999999999999877778999999999997 89999999999999865433 2 799995433
Q ss_pred CCCCCCCceEEEEEEEEec
Q 004222 164 GSPPKPGASIQLELKFTPC 182 (767)
Q Consensus 164 ~~~~~~~g~i~l~l~y~p~ 182 (767)
. ..+..|+|+|+++|.|.
T Consensus 125 ~-~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 125 H-KSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp T-TCCCCSEEEEEEEECC-
T ss_pred C-CCccCEEEEEEEEEEeC
Confidence 2 33568999999999997
No 15
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.68 E-value=1.4e-16 Score=147.47 Aligned_cols=118 Identities=25% Similarity=0.429 Sum_probs=97.6
Q ss_pred ccEEEEEEEEeecCCCC---CCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--
Q 004222 16 HGDLDLKIIRARRLPNM---DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-- 90 (767)
.|.|.|+|++|++|+.+ +..+. +||||++.+.+
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~------------------------------------------~dpyv~v~~~~~~ 39 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTTP 39 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCC------------------------------------------CCEEEEEECTTST
T ss_pred CcEEEEEEEeeeCCCCCCccccCCC------------------------------------------CCCEEEEEEccCC
Confidence 47899999999999975 32232 89999999975
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecC-CCceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCCCCCCC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~ 169 (767)
....+|++++++.||+|||+|.|.+.. ....|.|+|||++.+++++||.+.++|.++..+.....|++|. + ..
T Consensus 40 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~-~-----~~ 113 (126)
T 1rlw_A 40 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-Q-----VT 113 (126)
T ss_dssp TCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEET-T-----TE
T ss_pred CceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcC-C-----Cc
Confidence 356799999999999999999999954 3456999999999988999999999999999898999999993 2 23
Q ss_pred CceEEEEEEEEe
Q 004222 170 GASIQLELKFTP 181 (767)
Q Consensus 170 ~g~i~l~l~y~p 181 (767)
.|+|++++...|
T Consensus 114 ~g~i~~~le~~~ 125 (126)
T 1rlw_A 114 EMVLEMSLEVAS 125 (126)
T ss_dssp EEEEEEEEECCC
T ss_pred eEEEEEEEEeCC
Confidence 566666665443
No 16
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.67 E-value=1.3e-16 Score=162.65 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=108.8
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
.+.++.|+++|++|+++|+|++|+|.. ..|.++|++||+|||+||||+ |..++...
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~Y~~~~-----------------~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~------ 112 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAIYTFTS-----------------LFLADSIKRALQRGVIIRIIS-DGEMVYSK------ 112 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSCBCC-----------------HHHHHHHHHHHHHTCEEEEEC-CTTTTTST------
T ss_pred HHHHHHHHHHHHHhhhEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCeEEEEE-echhhhhh------
Confidence 678999999999999999999998854 589999999999999999997 98765431
Q ss_pred cccccCcHHHHhhhcCCCceEEecccccCcccch--hh--hccccceeeccceEEEeccCCCCCCcceEEEEccccCCCc
Q 004222 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSY--FK--QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (767)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~--~~--~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~ 396 (767)
......+..+++.+...........++ .. ......+.++|+|++|+|++ ++++||+|++..
T Consensus 113 -------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~ 177 (220)
T 4gel_A 113 -------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTAL 177 (220)
T ss_dssp -------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHH
T ss_pred -------HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcccccc
Confidence 122344555666665432111111110 00 00123356789999999998 999999999873
Q ss_pred ccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhc
Q 004222 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (767)
Q Consensus 397 r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gpav~dl~~~F~~~W~~~~ 460 (767)
.+ ...|.++.+...+++|..+++.|.++|+...
T Consensus 178 s~-------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~ 210 (220)
T 4gel_A 178 GL-------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFA 210 (220)
T ss_dssp HH-------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSE
T ss_pred cc-------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 22 1357788888888999999999999998643
No 17
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.66 E-value=4.3e-16 Score=152.73 Aligned_cols=126 Identities=19% Similarity=0.303 Sum_probs=101.8
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeee
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (767)
...+.|.|+|++|++|+..+..+. +||||+|.+++ .+
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~------------------------------------------sDPYv~v~~~~-~~ 69 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTVDG-QS 69 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEETT-EE
T ss_pred CCceEEEEEEEEeECCCCcccCCC------------------------------------------CCeEEEEEECC-EE
Confidence 356789999999999984443332 89999999988 56
Q ss_pred eeeccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCC-----ceeEEEEEccCCCCCCC
Q 004222 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-----ELISRWYDIIAPSGSPP 167 (767)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~-----~~~~~w~~l~~~~~~~~ 167 (767)
.||+++++|.||+|||+|.|.+. +...|.|+|||+|.++ +++||.+.++|.++..+ +....|++|....+ ..
T Consensus 70 ~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~ 147 (173)
T 2nq3_A 70 KKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PT 147 (173)
T ss_dssp EECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TT
T ss_pred eEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CC
Confidence 79999999999999999999986 4667999999999997 89999999999998632 12367999954422 33
Q ss_pred CCCceEEEEEEEEecCC
Q 004222 168 KPGASIQLELKFTPCDK 184 (767)
Q Consensus 168 ~~~g~i~l~l~y~p~~~ 184 (767)
+..|+|.+.+.|++...
T Consensus 148 ~~~G~L~v~l~~l~~~~ 164 (173)
T 2nq3_A 148 ETIGDLSICLDGLQLES 164 (173)
T ss_dssp SEEEEEEEEEESEECC-
T ss_pred cccEEEEEEEeeeecch
Confidence 46899999999998743
No 18
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.66 E-value=1.1e-15 Score=142.80 Aligned_cols=120 Identities=19% Similarity=0.357 Sum_probs=99.2
Q ss_pred cEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-eeeee
Q 004222 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (767)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~~~ 95 (767)
..|+|+|++|++|+.++..+. +||||++.+.. ....+
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDpyv~v~~~~~~~~~k 42 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRL------------------------------------------PDPFAKIVVDGSGQCHS 42 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCC------------------------------------------CCEEEEEEETTTCCEEE
T ss_pred EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEECCCCceEE
Confidence 578999999999999887665 99999999964 45689
Q ss_pred eccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCC----CceeEEEEccccccc-CCceeEEEEEccCCC-CCCCCC
Q 004222 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIA-TGELISRWYDIIAPS-GSPPKP 169 (767)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~----~~~iG~~~~~l~~~~-~~~~~~~w~~l~~~~-~~~~~~ 169 (767)
|+++++|.||+|||+|.|.+..+. .|.|+|||++.++ +++||.+.|++..+. .......|++|.... ....+.
T Consensus 43 T~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~ 121 (132)
T 3pyc_A 43 TDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAV 121 (132)
T ss_dssp CCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCC
T ss_pred CCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCce
Confidence 999999999999999999998764 5999999999886 699999999999883 344445789985432 223356
Q ss_pred CceEEEEEEE
Q 004222 170 GASIQLELKF 179 (767)
Q Consensus 170 ~g~i~l~l~y 179 (767)
.|+|.+++++
T Consensus 122 ~G~i~v~l~~ 131 (132)
T 3pyc_A 122 RGQIVVSLQT 131 (132)
T ss_dssp CSEEEEEEEE
T ss_pred eEEEEEEEEc
Confidence 8999999875
No 19
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.63 E-value=2.7e-15 Score=140.67 Aligned_cols=109 Identities=17% Similarity=0.412 Sum_probs=93.0
Q ss_pred CceeEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEE
Q 004222 9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV 88 (767)
Q Consensus 9 ~~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~ 88 (767)
..+..+..+.|.|+|++|++|+. +..+. +||||+|.+
T Consensus 12 ~~~~~~~~~~L~V~V~~a~~L~~-~~~g~------------------------------------------~DPyv~v~l 48 (134)
T 2b3r_A 12 KLSVSYRNGTLFIMVMHIKDLVT-EDGAD------------------------------------------PNPYVKTYL 48 (134)
T ss_dssp EEEEEEETTEEEEEEEEEECCCC-TTSCC------------------------------------------CCEEEEEEE
T ss_pred EEEEeecCCEEEEEEEEeeCCCC-CCCCC------------------------------------------CCeEEEEEE
Confidence 34557788999999999999985 54443 899999998
Q ss_pred C----CeeeeeeccccCCCCCeeeceEEEe-ecC---CCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 89 P----QATVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 89 ~----~~~~~~T~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
. .....||+++++|.||+|||+|.|. +.. ....|.|+|||++.++ +++||.+.|+|.++..+.....|++|
T Consensus 49 ~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 128 (134)
T 2b3r_A 49 LPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQL 128 (134)
T ss_dssp ESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEEC
T ss_pred EcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEEC
Confidence 2 2345799999999999999999999 664 2357999999999997 89999999999999988889999999
Q ss_pred c
Q 004222 160 I 160 (767)
Q Consensus 160 ~ 160 (767)
.
T Consensus 129 ~ 129 (134)
T 2b3r_A 129 T 129 (134)
T ss_dssp B
T ss_pred C
Confidence 4
No 20
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.59 E-value=4.9e-15 Score=140.27 Aligned_cols=104 Identities=33% Similarity=0.537 Sum_probs=91.2
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (767)
..+.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 69 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 69 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC------------------------------------------CCEEEEEEEESCCSC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------cCcEEEEEEECCCCc
Confidence 45789999999999998776554 8999999992 345
Q ss_pred eeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEcc
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~ 160 (767)
..+|+++++|.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.++|.++..+.....|++|.
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 67999999999999999999998653 257999999999997 899999999999999888999999993
No 21
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.59 E-value=6.1e-15 Score=141.28 Aligned_cols=104 Identities=33% Similarity=0.537 Sum_probs=91.5
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (767)
..+.|.|+|++|++|+.++..+. +||||+|.+. ...
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 77 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 77 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCS
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------cCeEEEEEEEcCCCc
Confidence 45799999999999998886654 8999999993 334
Q ss_pred eeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEcc
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~ 160 (767)
..+|+++++|.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++..+.....|++|.
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 67999999999999999999998653 456999999999997 999999999999998888899999994
No 22
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=141.20 Aligned_cols=106 Identities=17% Similarity=0.326 Sum_probs=90.3
Q ss_pred ccEEEEEEEEeecCCCCC-CcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
.+.|.|+|++|++|+.++ ..+. +||||++.+..
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR------------------------------------------SNPYVKTYLLPDKSR 59 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB------------------------------------------CCEEEEEEEETCCSG
T ss_pred CCEEEEEEEEecCCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 578999999999999877 3443 89999999952
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCC
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~ 163 (767)
....+|+++++|.||+|||+|.|.+.... ..|.|+|||+|.++ +++||.+.|+|.++..+.....|++|....
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 136 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence 23679999999999999999999987743 35999999999997 899999999999998777888999995443
No 23
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.58 E-value=7.8e-16 Score=153.97 Aligned_cols=119 Identities=18% Similarity=0.096 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCch
Q 004222 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (767)
Q Consensus 560 ~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~ 639 (767)
.+.+..++++|++|+++|+|+..+|.. ..++.+|.+|++| ||+|+||++......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~------------------~~i~~aL~~aa~r--GV~Vrii~D~~~~~~----- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS------------------PQLGRAVQLLHQR--GVRVRVITDCDYMAL----- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC------------------HHHHHHHHHHHHT--TCEEEEEESSCCC-------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC------------------HHHHHHHHHHHHc--CCcEEEEEecccccc-----
Confidence 356788999999999999999855541 3566777888664 599999998521100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEEe
Q 004222 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (767)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVD 719 (767)
... ....|.++|+++ + ++. ...++|+|++|||
T Consensus 100 --------~~~-------~~~~l~~~gi~v----~--~~~---------------------------~~~~~H~K~~viD 131 (196)
T 4ggj_A 100 --------NGS-------QIGLLRKAGIQV----R--HDQ---------------------------DLGYMHHKFAIVD 131 (196)
T ss_dssp ---------CC-------HHHHHHHTTCEE----E--ECC---------------------------SSSCCCCEEEEET
T ss_pred --------cHH-------HHHHHHhcCCCc----c--ccc---------------------------ccccccCcEEEEc
Confidence 000 145678889875 1 121 1347899999999
Q ss_pred eeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 720 d~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
++++++||+||+.+|+.. |.|.+++++|++++
T Consensus 132 ~~~~~~GS~N~t~~~~~~--n~E~~~~i~~~~~~ 163 (196)
T 4ggj_A 132 KKVLITGSLNWTTQAIQN--NRENVLIMEDTEYV 163 (196)
T ss_dssp TTEEEEESCCBCHHHHHH--CCEEEEEECCHHHH
T ss_pred ceEEEecCccCChhhhcc--cceeEEEEECHHHH
Confidence 999999999999999974 59999999999875
No 24
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.58 E-value=2.2e-14 Score=151.70 Aligned_cols=126 Identities=29% Similarity=0.491 Sum_probs=107.2
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--ee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~ 92 (767)
..+.|.|+|++|++|+.++..+. +||||++.+.. ..
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 54 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 54 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS------------------------------------------CCEEEEEEEETCTTS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeEEEEEEEcCCCc
Confidence 46899999999999998886665 99999999943 34
Q ss_pred eeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCC
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~ 168 (767)
..+|+++++|.||+|||+|.|.+... ...|.|+|||.|.++ +++||.+.++|.++..+.....|++|....+....
T Consensus 55 ~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~ 134 (284)
T 2r83_A 55 KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134 (284)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCC
T ss_pred eEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccccccc
Confidence 57999999999999999999998753 356999999999987 89999999999999988889999999654433334
Q ss_pred CCceEEEEEEEEec
Q 004222 169 PGASIQLELKFTPC 182 (767)
Q Consensus 169 ~~g~i~l~l~y~p~ 182 (767)
..|+|.+.+.|.|.
T Consensus 135 ~~G~i~l~l~~~p~ 148 (284)
T 2r83_A 135 KLGDICFSLRYVPT 148 (284)
T ss_dssp CCCEEEEEEEEETT
T ss_pred ccccEEEEEEecCc
Confidence 67999999999874
No 25
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.58 E-value=8.5e-15 Score=143.22 Aligned_cols=108 Identities=23% Similarity=0.416 Sum_probs=93.4
Q ss_pred EeeccEEEEEEEEeecCCCCCC-cchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-
Q 004222 13 IYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (767)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (767)
.+..+.|.|+|++|++|+.++. .+. +||||+|.+..
T Consensus 26 ~y~~~~L~V~v~~a~~L~~~d~~~g~------------------------------------------~DPyv~v~l~~~ 63 (171)
T 2q3x_A 26 EDKKGQLEVEVIRARSLTQKPGSKST------------------------------------------PAPYVKVYLLEN 63 (171)
T ss_dssp EEETTEEEEEEEEEESCCCCC---CC------------------------------------------CEEEEEEEEEET
T ss_pred EECCCEEEEEEEEeeCCCCCCcCCCC------------------------------------------CCceEEEEEECC
Confidence 4567899999999999998874 344 89999999843
Q ss_pred -e--eeeeeccccCCCCCeeeceEEEeecCCCceEEEEEE-EcCCCC-CceeEEEEcccccccCCceeEEEEEccCC
Q 004222 91 -A--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (767)
Q Consensus 91 -~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~-d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~ 162 (767)
. ...+|+++++|.||+|||+|.|.+......|.|+|| |+|.++ +++||.+.|+|.++..+.....|++|...
T Consensus 64 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 64 GACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp TEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 1 367999999999999999999999777777999999 999997 89999999999999988889999999543
No 26
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.57 E-value=1.1e-14 Score=139.03 Aligned_cols=106 Identities=23% Similarity=0.392 Sum_probs=91.8
Q ss_pred EeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--
Q 004222 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (767)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-- 90 (767)
.+..+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 27 ~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~ 64 (149)
T 1a25_A 27 HIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDP 64 (149)
T ss_dssp EESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEESCT
T ss_pred EecCCEEEEEEEEeeCCCCCCCCCC------------------------------------------cCeEEEEEEECCC
Confidence 4567899999999999998886655 89999999953
Q ss_pred --eeeeeeccccCCCCCeeeceEEEeecCC--CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccC
Q 004222 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (767)
Q Consensus 91 --~~~~~T~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~ 161 (767)
....+|+++++|.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++..+ ....|++|..
T Consensus 65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 65 KSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp TCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 4567999999999999999999998764 246999999999997 89999999999999865 5789999953
No 27
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.57 E-value=1.2e-14 Score=136.22 Aligned_cols=107 Identities=22% Similarity=0.405 Sum_probs=92.1
Q ss_pred EeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC---
Q 004222 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--- 89 (767)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--- 89 (767)
.+..|.|.|+|++|++|+.++..+. +||||++.+.
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~ 49 (137)
T 3rdl_A 12 EVTDEKLHVTVRDAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDP 49 (137)
T ss_dssp EEETTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEECCT
T ss_pred EEcCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeeEEEEEEcCC
Confidence 4567999999999999998886655 8999999993
Q ss_pred -CeeeeeeccccCCCCCeeeceEEEeecCCC--ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCC
Q 004222 90 -QATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (767)
Q Consensus 90 -~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~ 162 (767)
.....+|++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.++|.++..+. ...|++|...
T Consensus 50 ~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 50 KNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp TCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred CCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 345679999999999999999999987543 46999999999997 899999999999998655 7899999543
No 28
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=143.70 Aligned_cols=104 Identities=25% Similarity=0.414 Sum_probs=89.8
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
..+.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~------------------------------------------sDPyVkv~l~~~~~~ 78 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQD------------------------------------------QKVNIRVAVLPCSES 78 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCC------------------------------------------SEEEEEEEEESCSCH
T ss_pred CCCEEEEEEEEccCcCCcccCCC------------------------------------------CCEEEEEEEecCCCC
Confidence 35789999999999998886665 99999999943
Q ss_pred -eeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEccccccc-CCceeEEEEEcc
Q 004222 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDII 160 (767)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~-~~~~~~~w~~l~ 160 (767)
..+.||+++++|+||+|||+|.|.+... ...|.|+|||+|.++ +++||.+.|+|.++. .+.....|++|.
T Consensus 79 ~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 79 TTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 2367999999999999999999998653 346999999999997 899999999999996 467788999983
No 29
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=136.56 Aligned_cols=105 Identities=29% Similarity=0.470 Sum_probs=90.8
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (767)
..+.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKH 61 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEEEEESCCSS
T ss_pred CCCEEEEEEEEeECCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 45789999999999998886655 8999999993 345
Q ss_pred eeeeccccCCCCCeeeceEEEeecC----CCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccC
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~ 161 (767)
..+|+++++|.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.|+|.++..+.....|++|..
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 6799999999999999999998533 2456999999999987 8999999999999998888899999943
No 30
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.57 E-value=4.1e-15 Score=140.58 Aligned_cols=108 Identities=28% Similarity=0.436 Sum_probs=92.7
Q ss_pred eEeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe
Q 004222 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (767)
Q Consensus 12 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (767)
+.+..|.|.|+|++|++|+.++..+. +||||++.+...
T Consensus 13 l~y~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~ 50 (142)
T 1rh8_A 13 INYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLLPG 50 (142)
T ss_dssp EEEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEETTS
T ss_pred EEEcCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCceEEEEEecC
Confidence 35668899999999999999886665 899999999653
Q ss_pred -------------eeeeeccccCCCCCeeeceEEEe-ecC---CCceEEEEEEEcCCCC-CceeEEEEcccccccCCcee
Q 004222 92 -------------TVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (767)
Q Consensus 92 -------------~~~~T~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~ 153 (767)
...+|+++++|.||+|||+|.|. +.. ....|.|+|||+|.++ +++||.+.|+|.++..+...
T Consensus 51 ~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~ 130 (142)
T 1rh8_A 51 RGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT 130 (142)
T ss_dssp SCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTC
T ss_pred CCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCC
Confidence 24799999999999999999997 543 3457999999999997 89999999999999877778
Q ss_pred EEEEEccC
Q 004222 154 SRWYDIIA 161 (767)
Q Consensus 154 ~~w~~l~~ 161 (767)
..|++|..
T Consensus 131 ~~W~~L~~ 138 (142)
T 1rh8_A 131 PRWYPLKE 138 (142)
T ss_dssp CEEEECBC
T ss_pred CeEEECCc
Confidence 89999943
No 31
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.56 E-value=3.4e-15 Score=143.21 Aligned_cols=121 Identities=19% Similarity=0.151 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCch
Q 004222 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (767)
Q Consensus 560 ~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~ 639 (767)
.++...++++|++|+++|+|+++||.. ..+..+|.++++ |||+|+||++.... ..
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~------------------~~i~~aL~~a~~--rGV~Vril~~~~~~----~~- 67 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA------------------PDIMKALVAAKK--RGVDVKIVIDERGN----TG- 67 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC------------------HHHHHHHHHHHH--TTCEEEEEEESTTC----CS-
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC------------------HHHHHHHHHHHH--CCCEEEEEEeCccc----cc-
Confidence 467899999999999999999998842 245566777766 45999999996321 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEEe
Q 004222 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (767)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVD 719 (767)
..... ..+.|.+.|+++ + +|. ....+|+|++|||
T Consensus 68 ------~~~~~-------~~~~L~~~gv~v----~--~~~---------------------------~~~~~H~K~~iiD 101 (155)
T 1byr_A 68 ------RASIA-------AMNYIANSGIPL----R--TDS---------------------------NFPIQHDKVIIVD 101 (155)
T ss_dssp ------HHHHH-------HHHHHHHTTCCE----E--EEC---------------------------SSSCCCCCEEEET
T ss_pred ------cccHH-------HHHHHHHCCCeE----E--EcC---------------------------CcccccceEEEEC
Confidence 11122 256788889875 1 221 1247899999999
Q ss_pred eeEeeeccCCcCCcCCCCCCCccceeeecCC-ccc
Q 004222 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQP-HHT 753 (767)
Q Consensus 720 d~~~~IGSaNld~RS~~~n~d~E~~v~i~~p-~~~ 753 (767)
++++++||+||+.+|+. .|.|+++.+.++ +++
T Consensus 102 ~~~~~iGS~N~~~~~~~--~n~E~~~~i~~~~~l~ 134 (155)
T 1byr_A 102 NVTVETGSFNFTKAAET--KNSENAVVIWNMPKLA 134 (155)
T ss_dssp TTEEEEESCCBSHHHHH--TSCEEEEEEESCHHHH
T ss_pred CCEEEEECCCCCccccc--cCcccEEEEcCcHHHH
Confidence 99999999999999997 459999999994 764
No 32
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.55 E-value=2.2e-14 Score=133.12 Aligned_cols=101 Identities=26% Similarity=0.444 Sum_probs=83.1
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----Ce
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~~ 91 (767)
.+.|.|+|++|++|+.++..+. +||||++.+. ..
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 54 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 54 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSGG
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 4789999999999998886655 8999999992 24
Q ss_pred eeeeeccccCCCCCeeeceEEEeecC----CCceEEEEEEEcCCCC---CceeEEEEcccccccCCceeEEEEEc
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d~~~~~---~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
...+|+++++|.||+|||+|.|.+.. ....|.|+|||++.++ +++||.+.++|.++.... ...|++|
T Consensus 55 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 55 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred cceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 56799999999999999999999533 2346999999999986 899999999999987544 7899987
No 33
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.55 E-value=2.8e-14 Score=134.38 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=72.1
Q ss_pred CCcEEEEEEC---CeeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCce
Q 004222 80 SDPYVTVVVP---QATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (767)
Q Consensus 80 ~dpyv~v~~~---~~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (767)
+||||+|.+. .....+|+++++|+||+|||+|.|.+... ...|.|+|||+|.++ +++||.+.++|.++..+..
T Consensus 44 sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~ 123 (138)
T 1wfm_A 44 CDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLG 123 (138)
T ss_dssp CCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTT
T ss_pred cceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCccc
Confidence 8999999992 34467999999999999999999998764 346999999999997 8999999999999987778
Q ss_pred eEEEEEccC
Q 004222 153 ISRWYDIIA 161 (767)
Q Consensus 153 ~~~w~~l~~ 161 (767)
...|++|..
T Consensus 124 ~~~W~~L~~ 132 (138)
T 1wfm_A 124 AAQWGELKT 132 (138)
T ss_dssp CCEEEECCC
T ss_pred ccceeeCcC
Confidence 889999954
No 34
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.54 E-value=2.4e-14 Score=135.31 Aligned_cols=103 Identities=29% Similarity=0.480 Sum_probs=89.9
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
..+.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 64 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL------------------------------------------ADPYVKLHLLPGASK 64 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC------------------------------------------CCEEEEEEEESCCSG
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 46789999999999998886554 89999999954
Q ss_pred eeeeeeccccCCCCCeeeceEEEe-ecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEc
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
....+|+++++|.||+|||+|.|. +... ...|.|+|||++.++ +++||.+.|+|.++..+.....|++|
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 138 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEEC
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEec
Confidence 356799999999999999999998 5432 246999999999997 89999999999999988888889988
No 35
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.53 E-value=3e-14 Score=134.29 Aligned_cols=104 Identities=24% Similarity=0.404 Sum_probs=88.1
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----Ce
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~~ 91 (767)
.+.|.|+|++|++|+.++..+. +||||++.+. ..
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~ 57 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 57 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC------------------------------------------CCEEEECCCSSCCSSS
T ss_pred CCEEEEEEEEccCCCCcCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 5789999999999998886665 8999999982 24
Q ss_pred eeeeeccccCCCCCeeeceEEEee-cCC---CceEEEEEEEcCCCC---CceeEEEEcccccccCCceeEEEEEccCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPL-AHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~-~~~---~~~l~~~v~d~~~~~---~~~iG~~~~~l~~~~~~~~~~~w~~l~~~ 162 (767)
...+|+++++|.||+|||+|.|.+ ... ...|.|+|||++.++ +++||.+.|+|.++.... ...|++|...
T Consensus 58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~ 134 (141)
T 1v27_A 58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH 134 (141)
T ss_dssp SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence 567999999999999999999994 322 256999999999986 799999999999987544 7899999544
No 36
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.52 E-value=5.6e-14 Score=134.74 Aligned_cols=106 Identities=23% Similarity=0.409 Sum_probs=89.0
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP---- 89 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---- 89 (767)
.-.+.|.|+|++|++|+.++ .+. +||||+|.+.
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d-~g~------------------------------------------~Dpyv~v~l~~~~~ 60 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQ-PGT------------------------------------------CDPYVKISLIPEDS 60 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCS-SSC------------------------------------------CCEEEEEEEESCSC
T ss_pred CCCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCEEEEEEEEcCCC
Confidence 45678999999999999877 344 8999999993
Q ss_pred CeeeeeeccccCCCCCeeeceEEEeecC--CCceEEEEEEEcCCCC--CceeEEEEcccccccC-CceeEEEEEccCC
Q 004222 90 QATVARTRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG--AQIIGTAAIPAHTIAT-GELISRWYDIIAP 162 (767)
Q Consensus 90 ~~~~~~T~~~~~~~~P~w~e~~~~~~~~--~~~~l~~~v~d~~~~~--~~~iG~~~~~l~~~~~-~~~~~~w~~l~~~ 162 (767)
.....+|+++++|.||+|||+|.|.+.. ....|.|+|||++.++ +++||.+.|+|.++.. +.....|++|...
T Consensus 61 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 61 RLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp CTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred CccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 2345799999999999999999999843 3345999999999974 8999999999999984 7788999999654
No 37
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.51 E-value=8.3e-14 Score=130.98 Aligned_cols=105 Identities=29% Similarity=0.433 Sum_probs=87.9
Q ss_pred eccEEEEEEEEeecCCCCCCc-chhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Ce
Q 004222 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA 91 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~ 91 (767)
..+.|.|+|++|++|+.++.. +. +||||++.+. ..
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~~~~~~~ 57 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT------------------------------------------SDPYIKMTILPEKK 57 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB------------------------------------------CEEEEEEEEETTTC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC------------------------------------------CCCEEEEEEecCCC
Confidence 457899999999999988864 44 8999999994 34
Q ss_pred eeeeeccccCCCCCeeeceEEEe-ecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCc-eeEEEEEccC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIA 161 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~-~~~~w~~l~~ 161 (767)
...+|+++++|.||+|||+|.|. +... ...|.|+|||+|.++ +++||.+.|+|.++..+. ....|++|..
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 56899999999999999999996 6543 246999999999997 899999999999998654 4567788843
No 38
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=135.03 Aligned_cols=109 Identities=25% Similarity=0.445 Sum_probs=87.9
Q ss_pred ccEEEEEEEEeecCCCC-CCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--ee
Q 004222 16 HGDLDLKIIRARRLPNM-DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~ 92 (767)
.+.|.|+|++|++|+.. +..+. +.....+||||+|.+.. ..
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~------------------------------------~~~~~~~dpyv~v~l~~~~~~ 68 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGS------------------------------------RQDMAHSNPYVKICLLPDQKN 68 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCS------------------------------------SCTTCCCCCEEEEEEETCCSS
T ss_pred CCEEEEEEEEEeCCCCccccccc------------------------------------cccCCCCCcEEEEEEEeCCCc
Confidence 57899999999999973 43220 00112389999999952 34
Q ss_pred eeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEcc
Q 004222 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (767)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~ 160 (767)
..+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++..+.....|+.|.
T Consensus 69 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 69 SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp CEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred ceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence 67999999999999999999998653 246999999999997 899999999999998777778899883
No 39
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.50 E-value=7.7e-14 Score=130.84 Aligned_cols=92 Identities=27% Similarity=0.408 Sum_probs=79.7
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
..+.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 51 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGT------------------------------------------SDPYVKVWLMYKDKR 51 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTB------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCeEEEEEEEeeCCCCcCCCCC------------------------------------------cCeEEEEEEEeCCCc
Confidence 35789999999999998886655 89999999953
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEEccccccc
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (767)
....+|+++++|.||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.|++.++.
T Consensus 52 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 52 VEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred cceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 24679999999999999999999987654 46999999999997 899999999998643
No 40
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.50 E-value=1.1e-13 Score=133.49 Aligned_cols=104 Identities=27% Similarity=0.445 Sum_probs=87.6
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
..+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 60 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCce
Confidence 46799999999999998886655 89999999942
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcccccc------------cCCceeE
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI------------ATGELIS 154 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~------------~~~~~~~ 154 (767)
....+|+++++|.||+|||+|.|.+... ...|.|+|||+|.++ +++||.+.|++..+ ..+..+.
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~ 140 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEE
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeee
Confidence 2467999999999999999999998654 245999999999997 99999999999853 2355778
Q ss_pred EEEEcc
Q 004222 155 RWYDII 160 (767)
Q Consensus 155 ~w~~l~ 160 (767)
.|++|.
T Consensus 141 ~W~~L~ 146 (159)
T 1tjx_A 141 QWHTLQ 146 (159)
T ss_dssp EEEECB
T ss_pred eEEECc
Confidence 899984
No 41
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.6e-14 Score=132.75 Aligned_cols=104 Identities=22% Similarity=0.424 Sum_probs=87.3
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--e
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~--~ 91 (767)
.+.|.|+|++|++|+.++..+ +||||+|.+. . .
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------------------~dpyv~v~l~~~~~~~ 59 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-------------------------------------------SDPYVRMYLLPDKRRS 59 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-------------------------------------------CCEEEEEEEESCCCSS
T ss_pred CCEEEEEEEEeECCCCCCCCC-------------------------------------------CCeeEEEEEEcCCCCC
Confidence 678999999999999776322 7999999993 2 2
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC---CceeEEEEcccccccCCceeEEEEEccCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~---~~~iG~~~~~l~~~~~~~~~~~w~~l~~~ 162 (767)
...+|+++++|.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++..+.....|++|...
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 457999999999999999999998652 246999999999875 36999999999999877788899999544
No 42
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.49 E-value=1.7e-13 Score=133.24 Aligned_cols=104 Identities=28% Similarity=0.426 Sum_probs=86.3
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
..+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGK 72 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 35789999999999998886655 89999999964
Q ss_pred eeeeeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEccccccc------------CCceeE
Q 004222 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELIS 154 (767)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~------------~~~~~~ 154 (767)
....+|+++++|.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.++. .+..+.
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~ 152 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 152 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEE
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcce
Confidence 3567999999999999999999998753 346999999999997 899999999998753 244556
Q ss_pred EEEEcc
Q 004222 155 RWYDII 160 (767)
Q Consensus 155 ~w~~l~ 160 (767)
.|+.|.
T Consensus 153 ~Wh~L~ 158 (166)
T 2cm5_A 153 RWHQLQ 158 (166)
T ss_dssp EEEECB
T ss_pred EeeECC
Confidence 666663
No 43
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.48 E-value=2.4e-13 Score=130.09 Aligned_cols=102 Identities=27% Similarity=0.422 Sum_probs=79.3
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEE--CCee
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQAT 92 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~~ 92 (767)
..+.|.|+|++|++|+.++..+. +||||+|.+ ++..
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKR 65 (153)
T ss_dssp TTTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCeEEEEEEEeCCeE
Confidence 46789999999999998886655 899999999 4432
Q ss_pred --eeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEcc
Q 004222 93 --VARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (767)
Q Consensus 93 --~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~ 160 (767)
..+|+++++|.||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.|++.. .+.....|++|+
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 137 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEIC 137 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHH
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHH
Confidence 569999999999999999999987653 45999999999997 8999999999987 233334455543
No 44
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.46 E-value=2.6e-13 Score=125.75 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=88.6
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeE
Q 004222 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS 154 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~ 154 (767)
+|||+++.+-+.+ .||+++. ++.||+|||.|.|++..+. ..|.|+|+|++.++ +.+||++.++|.++..+....
T Consensus 37 ~Dp~akv~FRg~k-~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~ 115 (144)
T 3l9b_A 37 ADRIAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVE 115 (144)
T ss_dssp EEEEEEEEETTEE-EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEE
T ss_pred CCCeEEEEEeccc-eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEE
Confidence 8999999997755 6999998 6999999999999988753 45999999999997 999999999999999777777
Q ss_pred EEEEccCCCCCCCCCCceEEEEEEEEecC
Q 004222 155 RWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (767)
Q Consensus 155 ~w~~l~~~~~~~~~~~g~i~l~l~y~p~~ 183 (767)
.+.+|++.++++. .++|.+.++|.|..
T Consensus 116 l~~~LvD~n~~~~--~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 116 VSDTLIDDNNAII--KTSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEECTTSCEE--EEEEEEEEEEEETT
T ss_pred EeecccCCCCCcc--ccEEEEEEEecCCC
Confidence 8888988877663 48999999999964
No 45
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.45 E-value=3.5e-13 Score=143.53 Aligned_cols=124 Identities=24% Similarity=0.405 Sum_probs=99.6
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEE--CCeee
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQATV 93 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~~~ 93 (767)
.+.|.|+|++|++|+.++..+. +||||++.+ ++...
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dPyv~v~l~~~~~~~ 56 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRKKK 56 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTTSC
T ss_pred CCEEEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEcCCCee
Confidence 5789999999999998886665 999999999 23456
Q ss_pred eeeccccCCCCCeeeceEEEeecCC---CceEEEEEEEcCCCC-CceeEEEEcc-ccccc-CCceeEEEEEccCCCCCCC
Q 004222 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIP-AHTIA-TGELISRWYDIIAPSGSPP 167 (767)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~-l~~~~-~~~~~~~w~~l~~~~~~~~ 167 (767)
.+|+++++|.||+|||+|.|.+... ...|+|+|||.|.++ +++||.+.++ +..+. .......|++|....+ ..
T Consensus 57 ~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~-~~ 135 (296)
T 1dqv_A 57 FQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGS-EK 135 (296)
T ss_dssp EECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSS-CC
T ss_pred EeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccc-cc
Confidence 7999999999999999999998653 236999999999997 8999999996 44443 3445667999954332 22
Q ss_pred CCCceEEEEEEEEec
Q 004222 168 KPGASIQLELKFTPC 182 (767)
Q Consensus 168 ~~~g~i~l~l~y~p~ 182 (767)
...|+|.+.+.|.|.
T Consensus 136 ~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 136 ADLGELNFSLCYLPT 150 (296)
T ss_dssp SCCCEEEEEEEEETT
T ss_pred cccceEEEEEEeccc
Confidence 457999999999764
No 46
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.43 E-value=4.7e-13 Score=124.86 Aligned_cols=95 Identities=19% Similarity=0.330 Sum_probs=74.7
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (767)
.+.|.|+|++|++|+. .+. +||||++. .+ . .+
T Consensus 4 ~~~L~V~V~~A~~l~~---~g~------------------------------------------~DPYv~v~-~~-~-~k 35 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA---QEK------------------------------------------FNTYVTLK-VQ-N-VK 35 (131)
T ss_dssp CEEEEEEEEEEECSSC---GGG------------------------------------------CEEEEEEE-ET-T-EE
T ss_pred ceEEEEEEEEeECCCC---CCC------------------------------------------cCeEEEEE-ec-C-EE
Confidence 3789999999998852 333 89999999 22 2 35
Q ss_pred ecccc-CCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccCCc--eeEEEEEc
Q 004222 96 TRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISRWYDI 159 (767)
Q Consensus 96 T~~~~-~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~--~~~~w~~l 159 (767)
|++++ ++.||+|||+|.|.+......|.|+|||+| ++ |++||++.|+|.++.... ....|.++
T Consensus 36 t~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~ 102 (131)
T 2cjt_A 36 STTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTL 102 (131)
T ss_dssp EECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCEEEEC
T ss_pred EeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccccEEc
Confidence 65555 699999999999999887778999999999 65 899999999999986322 22245555
No 47
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.36 E-value=2.9e-12 Score=146.74 Aligned_cols=116 Identities=21% Similarity=0.367 Sum_probs=99.0
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (767)
.|.|.|+|++|++|+.++..+. +||||++.++.. ..+
T Consensus 386 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------sdpyv~v~~~~~-~~~ 422 (510)
T 3jzy_A 386 IGRLMVHVIEATELKACKPNGK------------------------------------------SNPYCEISMGSQ-SYT 422 (510)
T ss_dssp CEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTE-EEE
T ss_pred CceEEEEeceeecCCCCCCCCC------------------------------------------CCeEEEEEECCe-ecc
Confidence 4789999999999998887665 999999999775 479
Q ss_pred eccccCCCCCeeeceEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEEcccccccCCce----eEEEEEccCCCCCCCCC
Q 004222 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL----ISRWYDIIAPSGSPPKP 169 (767)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~----~~~w~~l~~~~~~~~~~ 169 (767)
|+++++|.||+|||+|.|.+..+. ..|+|+|||+|.++ +++||.+.+++.++..+.. ...|+++... .
T Consensus 423 T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~ 496 (510)
T 3jzy_A 423 TRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------P 496 (510)
T ss_dssp CCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------S
T ss_pred CCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC------C
Confidence 999999999999999999987655 45999999999998 8999999999999986543 7789998322 4
Q ss_pred CceEEEEEEEE
Q 004222 170 GASIQLELKFT 180 (767)
Q Consensus 170 ~g~i~l~l~y~ 180 (767)
.|+|.+.+.+.
T Consensus 497 ~G~i~l~~~l~ 507 (510)
T 3jzy_A 497 TGEVWVRFDLQ 507 (510)
T ss_dssp SCEEEEEEEEE
T ss_pred CceEEEEEEEE
Confidence 68888887764
No 48
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.36 E-value=7.8e-13 Score=134.54 Aligned_cols=139 Identities=16% Similarity=0.046 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCch
Q 004222 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (767)
Q Consensus 560 ~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~~ 639 (767)
....+.++++|++||++|+|+.++|. + ..++.+|.+|++|| |+|+||++........
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~Y~~~-------~-----------~~I~~aL~~Aa~RG--V~VRii~D~~~~~~~~--- 113 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAIYTFT-------S-----------LFLADSIKRALQRG--VIIRIISDGEMVYSKG--- 113 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSCBC-------C-----------HHHHHHHHHHHHHT--CEEEEECCTTTTTSTT---
T ss_pred HHHHHHHHHHHHHhhhEEEEEEEEeC-------C-----------HHHHHHHHHHHHcC--CeEEEEEechhhhhhH---
Confidence 45678899999999999999974443 1 35677888887765 9999999853211100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEEe
Q 004222 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (767)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVD 719 (767)
. ....+...|+.+ + .+ . ....+-.......+.. .........|.|++++|
T Consensus 114 ---------~--------~~~~~~~~~~~~----~--~~-~-~~~~~h~K~~viD~~~-----~~~~~~~~~H~K~~v~D 163 (220)
T 4gel_A 114 ---------S--------QISMLAQLGVPV----R--VP-I-TTNLMHNKFCIIDGFE-----RVEEIRLLRKLKFMRPC 163 (220)
T ss_dssp ---------C--------HHHHHHHTTCCE----E--EC-C-SSSCBCCCEEEESCHH-----HHHHHHHHTTCSCCCCC
T ss_pred ---------H--------HHHHHHhcCCcE----E--ee-c-ccccccceeEEEcchh-----cccccccccceeccccc
Confidence 0 034455666643 1 11 0 0000000000000000 00001224566666666
Q ss_pred eeEeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 720 d~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
++++++||+||+.+|+.. |.|.++++.+++++
T Consensus 164 ~~~v~~GS~N~t~~s~~~--N~E~~~vi~~~~~a 195 (220)
T 4gel_A 164 YSIVISGSVNWTALGLGG--NWENCIITADDKLT 195 (220)
T ss_dssp CCEEEEESCCBSHHHHHT--SBEEEEEECCHHHH
T ss_pred cceEEecCcccccccccc--CceEEEEEECHHHH
Confidence 789999999999999985 59999999999876
No 49
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.35 E-value=4.6e-12 Score=123.17 Aligned_cols=66 Identities=23% Similarity=0.417 Sum_probs=56.9
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeeeceEEEeecCCCceEEEEEEEcCCCC-CceeEEEEcccccccC
Q 004222 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~ 149 (767)
+||||+|. .+ . .+|++++ ++.||+|||+|.|.+......|.|+|||+| ++ |++||++.|+|.++..
T Consensus 32 ~DPYV~v~-~~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 32 FNTYVTLK-VQ-N-VESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp CEEEEEEE-ET-T-EEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCB
T ss_pred CCeEEEEE-ec-c-eEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcc
Confidence 89999999 22 2 4676665 699999999999999887778999999999 65 9999999999999863
No 50
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.35 E-value=6.1e-12 Score=143.51 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=90.1
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (767)
.|.|.|+|++|++|+. |..+. +||||+|.+.+.. .|
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~------------------------------------------sDPYV~v~l~~~~-~k 428 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTA------------------------------------------TDAYLKVFFGGQE-FR 428 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSC------------------------------------------CCEEEEEEETTEE-EE
T ss_pred ccEEEEEEEEccCCCc-ccCCC------------------------------------------cCeEEEEEECCEe-ee
Confidence 3789999999999998 87666 9999999998765 89
Q ss_pred eccccCCCCCeeeceEEEeecC--CCceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCCCCCce
Q 004222 96 TRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS 172 (767)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~--~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~ 172 (767)
|+++++++||+|||.|.|.+.. ....|+|+|||+|.++ ||+||.+.++|. .| ....|++| ..|+
T Consensus 429 Tkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l---------~~G~ 495 (540)
T 3nsj_A 429 TGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCEL---------NHGR 495 (540)
T ss_dssp CCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEEC---------SSSE
T ss_pred eeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEc---------CCeE
Confidence 9999999999999999998643 4566999999999987 799999999988 23 46689887 3578
Q ss_pred EEEEEE
Q 004222 173 IQLELK 178 (767)
Q Consensus 173 i~l~l~ 178 (767)
|.++++
T Consensus 496 l~~~~~ 501 (540)
T 3nsj_A 496 VKFSYH 501 (540)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777765
No 51
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.32 E-value=6.8e-12 Score=146.13 Aligned_cols=122 Identities=23% Similarity=0.423 Sum_probs=99.4
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
..+.|+|+|++|++|+.++... ...+||||+|.+.+
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~----------------------------------------~~~~DPYV~V~l~g~~~d 534 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNK----------------------------------------NSIVDPKVIVEIHGVGRD 534 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCS----------------------------------------SSCCCEEEEEEEESSGGG
T ss_pred cceEEEEEEEEcCCCCcccccc----------------------------------------cCCCCcEEEEEEecCCCC
Confidence 4578999999999999776310 11289999999943
Q ss_pred eeeeeeccccCC-CCCeeeceEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCCCCCCC
Q 004222 91 ATVARTRVLKNS-QEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (767)
Q Consensus 91 ~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~~~ 167 (767)
....||++++++ .||+|||+|.|.+..+. ..|+|+|||+|.++ +++||++.|||..+..|. +|++|.+..|.+.
T Consensus 535 ~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~ 611 (624)
T 1djx_A 535 TGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH 611 (624)
T ss_dssp CEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE
T ss_pred cceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC
Confidence 345799999997 99999999999998765 45999999999997 999999999999998764 5899977766542
Q ss_pred CCCceEEEEEEEE
Q 004222 168 KPGASIQLELKFT 180 (767)
Q Consensus 168 ~~~g~i~l~l~y~ 180 (767)
..++|.+.+.|.
T Consensus 612 -~~~~L~v~i~~~ 623 (624)
T 1djx_A 612 -PSATLFVKISIQ 623 (624)
T ss_dssp -EEEEEEEEEEEE
T ss_pred -CceEEEEEEEEE
Confidence 367888888874
No 52
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.30 E-value=4e-13 Score=152.48 Aligned_cols=126 Identities=25% Similarity=0.434 Sum_probs=24.8
Q ss_pred eeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeee
Q 004222 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (767)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (767)
...+.|+|+|++|++|+++ .||||++.+++...
T Consensus 8 r~~~~L~V~VieAk~L~~~-----------------------------------------------ddpYv~v~l~~~~~ 40 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPK-----------------------------------------------KRYYCELCLDDMLY 40 (483)
T ss_dssp EEEECC--------------------------------------------------------------------------
T ss_pred eeccEEEEEEEEcCCcCCC-----------------------------------------------CCCeEEEEECCeEE
Confidence 4568999999999999742 27999999988767
Q ss_pred eeeccccCC---CCCeeeceEEEeecCCCceEEEEEEEc-CC---CC-CceeEEEEcccccccCCceeEEEEEccCCCCC
Q 004222 94 ARTRVLKNS---QEPVWNEHFNIPLAHPLSNLEIQVKDD-DV---FG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (767)
Q Consensus 94 ~~T~~~~~~---~~P~w~e~~~~~~~~~~~~l~~~v~d~-~~---~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~ 165 (767)
.||+++++| .||+|||+|.|.+......|.|+|||. |. .+ +++||.+.|++.++..+...+.|++|..+.+.
T Consensus 41 ~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~ 120 (483)
T 3bxj_A 41 ARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120 (483)
T ss_dssp ------------------CCEECC------------------------------------------CCEECC--------
T ss_pred eeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCc
Confidence 899999999 999999999999765566799999994 52 44 89999999999999988888999999544321
Q ss_pred ---------------------CCCCCceEEEEEEEEecCCCC
Q 004222 166 ---------------------PPKPGASIQLELKFTPCDKNP 186 (767)
Q Consensus 166 ---------------------~~~~~g~i~l~l~y~p~~~~p 186 (767)
.....|+|+|+++|.+....|
T Consensus 121 ~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~vlP 162 (483)
T 3bxj_A 121 GGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILP 162 (483)
T ss_dssp ------------------------------CEEEEEECCBCC
T ss_pred cccccccccccccccccccccCCCCCceEEEEEEeeeeeecc
Confidence 113468999999998874443
No 53
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.26 E-value=2.1e-11 Score=128.73 Aligned_cols=103 Identities=26% Similarity=0.448 Sum_probs=86.4
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Ce--
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA-- 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~-- 91 (767)
.+.|.|+|++|++|+.++..+. +||||++.+. +.
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 186 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKRL 186 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEEE
T ss_pred CCceEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEeCCcEe
Confidence 4689999999999998886655 8999999983 22
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEEccccccc------------CCceeEE
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELISR 155 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~------------~~~~~~~ 155 (767)
.+.+|+++++|.||+|||.|.|.+..+. ..|.|+|||++.++ +++||.+.|++..+. .+..+..
T Consensus 187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~ 266 (284)
T 2r83_A 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ 266 (284)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEE
T ss_pred eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchhe
Confidence 4579999999999999999999987653 35999999999997 899999999997632 3456778
Q ss_pred EEEcc
Q 004222 156 WYDII 160 (767)
Q Consensus 156 w~~l~ 160 (767)
|++|.
T Consensus 267 W~~L~ 271 (284)
T 2r83_A 267 WHTLQ 271 (284)
T ss_dssp EEECB
T ss_pred eeecC
Confidence 99884
No 54
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.26 E-value=1.2e-11 Score=139.00 Aligned_cols=148 Identities=18% Similarity=-0.005 Sum_probs=103.9
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccC
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (767)
......++++|.+|+++|+|++++|.|+ ..+.++|+.|++|||+|+||+ ++..+.........
T Consensus 257 ~~i~~~~~~lI~~A~~~I~I~tpYf~p~----------------~~~~~aL~~Aa~rGV~VrIi~-~~~~and~y~~~~~ 319 (458)
T 3hsi_A 257 NELNQVIEDLFLQVQKKLVICTPYFNFP----------------RTLQHKIATLLENGKRVEIIV-GDKVANDFYIPPEQ 319 (458)
T ss_dssp CHHHHHHHHHHHTCSSEEEEECSSSCCC----------------HHHHHHHHHHHTTTCEEEEEE-ECGGGSTTCCCTTS
T ss_pred hHHHHHHHHHHHhcccEEEEEEeccCCC----------------HHHHHHHHHHHHCCCeEEEEE-CCccccCCccCCcc
Confidence 5678899999999999999999999885 789999999999999999998 77643221100011
Q ss_pred cccccCcH-HH-----------HhhhcCCC-ceEEecccccCcccchhhhccccceeeccceEEEeccCCCCCCcceEEE
Q 004222 321 GVMATHDE-ET-----------KKFFKHSS-VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (767)
Q Consensus 321 ~~~~~~~~-~~-----------~~~l~~~g-i~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~ 387 (767)
.++..... .. .+.|..+| +.|..+... .+..|.|++|||++ +++
T Consensus 320 ~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~~~~---------------~~~lHaK~~vvD~~--------~~~ 376 (458)
T 3hsi_A 320 PFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWRDG---------------DNTYHLKGVWVDDR--------YIL 376 (458)
T ss_dssp CCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEECBT---------------TBEECCCEEEETTT--------EEE
T ss_pred hhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEEecC---------------CCceeEEEEEECCe--------EEE
Confidence 11111111 11 12344566 444432211 12489999999999 999
Q ss_pred EccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh---HHHHHHHHHHHHHhhhc
Q 004222 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP---AAYDVLINFEQRWRKAT 460 (767)
Q Consensus 388 vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp---av~dl~~~F~~~W~~~~ 460 (767)
|||+|++. |... --.++.+.|.+| .+.++.+.|..+|..+.
T Consensus 377 vGS~N~d~-RS~~-------------------------------lN~E~~~~i~~~~~~l~~~l~~~f~~~~~~s~ 420 (458)
T 3hsi_A 377 LTGNNLNP-RAWR-------------------------------LDAENGLLIYDPQQQLLAQVEKEQNQIRQHTK 420 (458)
T ss_dssp EECCCCSH-HHHH-------------------------------TCEEEEEEEECTTCSSHHHHHHHHHHHHTTEE
T ss_pred ecCCCCCc-chhh-------------------------------hCceeEEEEeCCcHHHHHHHHHHHHHHHHhCe
Confidence 99999998 4311 124789999998 79999999999997654
No 55
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.26 E-value=9.8e-12 Score=146.06 Aligned_cols=103 Identities=27% Similarity=0.467 Sum_probs=91.0
Q ss_pred eccEEEEEEEEeecCCC---CCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-
Q 004222 15 LHGDLDLKIIRARRLPN---MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (767)
..+.|+|+|++|++|+. +|..+. +||||+|.+..
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------------------sDPYV~V~l~~~ 53 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTT 53 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCC------------------------------------------CCEEEEEECTTS
T ss_pred CccEEEEEEEEEECCCCccccCCCCC------------------------------------------cCeEEEEEEecC
Confidence 35799999999999997 565444 89999999974
Q ss_pred -eeeeeeccccCCCCCeeeceEEEeecCC-CceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEc
Q 004222 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (767)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l 159 (767)
..+.||+++++|.||+|||+|.|.+..+ ...|+|+|||+|.+++++||++.|+|.++..+.....|++|
T Consensus 54 ~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L 124 (749)
T 1cjy_A 54 PDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 124 (749)
T ss_dssp TTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEE
T ss_pred CCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEec
Confidence 3567999999999999999999999874 45699999999998899999999999999988888999999
No 56
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.18 E-value=2.4e-11 Score=141.76 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=86.6
Q ss_pred HHHHHHHHhccc-----eEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004222 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (767)
Q Consensus 564 ~~~~~~I~~A~~-----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~ 638 (767)
..++++|++|++ +|+| ++||+.. + ..++.+|++|+++ ||+|+||++..+. .+.
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~-----d-----------~~I~~AL~~AA~r--GV~VrVLvd~~a~--~~~- 407 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAK-----D-----------SRIIDSMIHAAHN--GKKVTVVVELQAR--FDE- 407 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCT-----T-----------CHHHHHHHHHHHT--TCEEEEEECTTCS--STT-
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecC-----c-----------HHHHHHHHHHHhc--CCEEEEEECCCcc--cch-
Confidence 578899999997 9999 8999832 2 1456677777664 5999999996431 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEE
Q 004222 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (767)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (767)
.+... ..+.|.++|++| + +| . ....+|+|++||
T Consensus 408 -------~~n~~-------~~~~L~~aGV~V----~--~~-~--------------------------~~~k~H~Ki~VI 440 (687)
T 1xdp_A 408 -------EANIH-------WAKRLTEAGVHV----I--FS-A--------------------------PGLKIHAKLFLI 440 (687)
T ss_dssp -------TTTTT-------TTHHHHHHTCEE----E--EC-C--------------------------TTCEECCEEEEE
T ss_pred -------hhHHH-------HHHHHHHCCCEE----E--Ee-c--------------------------CCccccceEEEE
Confidence 00111 257788999976 1 11 1 123599999999
Q ss_pred ee----eE---eeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 719 DD----EY---VIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 719 Dd----~~---~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
|+ ++ ++|||+|+|.||+. .++|+++.+.+|+++
T Consensus 441 D~re~~~i~~~a~iGS~N~d~rs~~--~n~D~~l~i~~~~i~ 480 (687)
T 1xdp_A 441 SRKENGEVVRYAHIGTGNFNEKTAR--LYTDYSLLTADARIT 480 (687)
T ss_dssp EEEETTEEEEEEEEESSCSCTTGGG--TEEEEEEEECCHHHH
T ss_pred EeccCCeEEEEEEEeCCcCCcchhh--hcceEEEEEeCHHHH
Confidence 95 44 99999999999997 459999999999864
No 57
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.18 E-value=1e-11 Score=132.16 Aligned_cols=103 Identities=29% Similarity=0.457 Sum_probs=83.8
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--e
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~--~ 91 (767)
.|.|.|+|++|++|+.++..+. +||||++.+. + .
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~ 188 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRL 188 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTT
T ss_pred cceeEEEEEEeecCCccCCCCC------------------------------------------CCcEEEEEEEeCCcCc
Confidence 4789999999999999887665 8999999995 2 2
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~ 161 (767)
.+.+|+++++|.||+|||.|.|.+..+. ..|.|+|||++.++ +++||.+.|++..+.. .....|++++.
T Consensus 189 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~ 261 (296)
T 1dqv_A 189 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA 261 (296)
T ss_dssp SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSS
T ss_pred cceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHh
Confidence 4579999999999999999999987653 35999999999997 8999999999987642 12334555543
No 58
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=99.05 E-value=4e-10 Score=128.82 Aligned_cols=153 Identities=19% Similarity=0.227 Sum_probs=92.5
Q ss_pred chHHHHHHHHHhccceEEEEEe----ecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEeCCCCccCcccc
Q 004222 242 TCWEDICHAISEAHHLIYIVGW----SVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317 (767)
Q Consensus 242 ~~f~~l~~~I~~A~~~I~I~~~----~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~ 317 (767)
.....++++|.+||++|+|++. +|.|... ....+.++|+.|++|||+||||+ +....... .
T Consensus 314 ~~~~~~~~~I~~A~~~I~I~tq~~~pyf~p~~~------------~~~~i~~aL~~Aa~rGV~VrIl~-~~~~~~~~--~ 378 (506)
T 1v0w_A 314 PEESALRALVASAKGHIEISQQDLNATCPPLPR------------YDIRLYDALAAKMAAGVKVRIVV-SDPANRGA--V 378 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCSSCCTTTSCS------------CCHHHHHHHHHHHHTTCEEEEEE-CCGGGCC----
T ss_pred cHHHHHHHHHhCcCcEEEEEeccccccccCccc------------chHHHHHHHHHHHhCCCcEEEEe-CCCCchHH--H
Confidence 4678999999999999999973 3444200 01689999999999999999998 65431110 0
Q ss_pred ccCcccccCcHHHH---------hhhcCCC-----------ceEEecccccCcccchhhhccccceeeccceEEEeccCC
Q 004222 318 KTPGVMATHDEETK---------KFFKHSS-----------VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA 377 (767)
Q Consensus 318 ~~~~~~~~~~~~~~---------~~l~~~g-----------i~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~ 377 (767)
...++... .... ..+..+| +++..+...+. ..+. .......|.|++|||++
T Consensus 379 ~~a~~~~~--~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~---~~~~---~~~~~~lHaK~~vvD~~- 449 (506)
T 1v0w_A 379 GSGGYSQI--KSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPN---GKWA---DGHPYAQHHKLVSVDSS- 449 (506)
T ss_dssp ----CCCC--SCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSS---SSCT---TSCCCCBCCEEEEETTT-
T ss_pred HHhHHHHH--HHHHHhhhhhcccchhcccccchhccccccceeeeeccccCc---cccc---cCccccceEEEEEECCc-
Confidence 00000000 0000 0011111 23321100000 0000 00023499999999999
Q ss_pred CCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHH-
Q 004222 378 SGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR- 455 (767)
Q Consensus 378 ~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp-av~dl~~~F~~~- 455 (767)
+++|||+|++. |. ++++.+.|++| .+.++...|.++
T Consensus 450 -------~~~vGS~N~d~-rS----------------------------------~~E~~l~i~~~~~a~~l~~~f~~~~ 487 (506)
T 1v0w_A 450 -------TFYIGSKNLYP-SW----------------------------------LQDFGYIVESPEAAKQLDAKLLDPQ 487 (506)
T ss_dssp -------EEEEESCCSSC-CC----------------------------------SBCEEEEEECHHHHHHHHHHTHHHH
T ss_pred -------EEEEeCCCCCC-cc----------------------------------hhhceeEecCHHHHHHHHHHHHHHH
Confidence 99999999966 32 24889999998 578899999975
Q ss_pred Hhhhc
Q 004222 456 WRKAT 460 (767)
Q Consensus 456 W~~~~ 460 (767)
|+...
T Consensus 488 w~~s~ 492 (506)
T 1v0w_A 488 WKYSQ 492 (506)
T ss_dssp HHHHG
T ss_pred Hhhcc
Confidence 87543
No 59
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.98 E-value=7.3e-09 Score=93.20 Aligned_cols=89 Identities=16% Similarity=0.352 Sum_probs=76.8
Q ss_pred CCcEEEEEECCeeee---ee-ccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEccccccc-----CC
Q 004222 80 SDPYVTVVVPQATVA---RT-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (767)
Q Consensus 80 ~dpyv~v~~~~~~~~---~T-~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~-----~~ 150 (767)
.||||.|.++..... +| ..+++|..|+||+.|.-.+.. ...|.|.|++... ++++.+.|++.+|. .+
T Consensus 27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~ 102 (126)
T 1yrk_A 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN 102 (126)
T ss_dssp CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 899999999876544 77 788889999999999999875 4589999998766 99999999999998 35
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 004222 151 ELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (767)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~i~l~l~y~ 180 (767)
...+.|++| ++.|+|++.++|.
T Consensus 103 g~~e~WvdL--------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 103 GKAEFWLDL--------QPQAKVLMSVQYF 124 (126)
T ss_dssp TEEEEEEEC--------BSSCEEEEEEEEE
T ss_pred CceEEEEec--------ccCcEEEEEEEEe
Confidence 577899999 5689999999986
No 60
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.93 E-value=2.5e-09 Score=126.61 Aligned_cols=107 Identities=22% Similarity=0.408 Sum_probs=90.9
Q ss_pred EeeccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC---
Q 004222 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--- 89 (767)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--- 89 (767)
.+..+.|.|+|++|++|+.++..+. +||||++.+.
T Consensus 168 ~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDPyvkv~l~p~~ 205 (674)
T 3pfq_A 168 HIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDP 205 (674)
T ss_dssp EECSSEEEEEEEEEESCCCCSTTSS------------------------------------------CCEEEEEEEESCS
T ss_pred eeccceeeeeeecccccCCCCcccc------------------------------------------cCcccccccccCc
Confidence 3457889999999999999987766 9999999982
Q ss_pred -CeeeeeeccccCCCCCeeeceEEEeecCC--CceEEEEEEEcCCCC-CceeEEEEcccccccCCceeEEEEEccCC
Q 004222 90 -QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (767)
Q Consensus 90 -~~~~~~T~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~l~~~ 162 (767)
...+.+|+++++|.||+|||.|.|.+... ...|.|+|||+|.++ +++||.+.+++.++.... ...|+.++..
T Consensus 206 ~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 206 KSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp SCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred cccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeeccc
Confidence 23457999999999999999999998754 345999999999998 999999999999998543 5889999654
No 61
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.93 E-value=6.9e-09 Score=94.54 Aligned_cols=91 Identities=19% Similarity=0.394 Sum_probs=78.2
Q ss_pred CCcEEEEEECCeee---eee-ccccCCCCCeeeceEEEeecCCCceEEEEEEEcCCCCCceeEEEEccccccc-----CC
Q 004222 80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (767)
Q Consensus 80 ~dpyv~v~~~~~~~---~~T-~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~-----~~ 150 (767)
.||||.|.++.... ++| ..+++|..|+||+.|.-.+.. ...|.|.|++... +++..+.|++.+|. .+
T Consensus 32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 89999999987655 888 888889999999999999865 4589999997655 89999999999998 35
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEEec
Q 004222 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (767)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~i~l~l~y~p~ 182 (767)
...+.|++| ++.|+|++.++|.-.
T Consensus 108 g~~e~WvdL--------eP~Gkl~v~i~~~~e 131 (138)
T 2enj_A 108 GKTEIWLEL--------KPQGRMLMNARYFLE 131 (138)
T ss_dssp TCEEEEEEC--------BSSCEEEEEEEECCC
T ss_pred CceEEEEec--------ccCcEEEEEEEEEEe
Confidence 577899999 568999999999644
No 62
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.89 E-value=4.6e-09 Score=125.38 Aligned_cols=96 Identities=22% Similarity=0.383 Sum_probs=76.8
Q ss_pred CCcEEEEEECC-----eeeeeeccccC-CCCCeeec-eEEEe-ecCCC-ceEEEEEEEcCCCCCceeEEEEcccccccCC
Q 004222 80 SDPYVTVVVPQ-----ATVARTRVLKN-SQEPVWNE-HFNIP-LAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATG 150 (767)
Q Consensus 80 ~dpyv~v~~~~-----~~~~~T~~~~~-~~~P~w~e-~~~~~-~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~ 150 (767)
+||||+|.+.+ ..+.||+++.+ +.||+||| +|.|. +..+. ..|+|+|||+| +++||++.|||..|..|
T Consensus 742 ~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~G 818 (885)
T 3ohm_B 742 VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSG 818 (885)
T ss_dssp CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCE
T ss_pred CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCC
Confidence 89999999943 23469999986 69999999 69998 65544 45999999987 89999999999999976
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEEec
Q 004222 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (767)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~i~l~l~y~p~ 182 (767)
. ++++|.+..|.+ ...++|.+.+.+...
T Consensus 819 y---R~vpL~~~~g~~-l~~atLfv~i~~~~~ 846 (885)
T 3ohm_B 819 Y---HYVCLRNEANQP-LCLPALLIYTEASDY 846 (885)
T ss_dssp E---EEEEEECTTSCE-EEEEEEEEEEEEEEC
T ss_pred c---eEEEecCCCCCc-cCceEEEEEEEEEec
Confidence 4 457887666644 246889999988764
No 63
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=98.88 E-value=7.8e-09 Score=122.77 Aligned_cols=114 Identities=24% Similarity=0.392 Sum_probs=91.3
Q ss_pred ccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004222 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (767)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (767)
.+.|+|+|++|++|+.. . +||||+|++.+ .
T Consensus 649 ~~~L~V~Visaq~L~~~----~------------------------------------------~DPYV~V~l~g~p~d~ 682 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----Q------------------------------------------ISSYVEVEMYGLPTDT 682 (816)
T ss_dssp CEEEEEEEEEEECCCSS----C------------------------------------------CCEEEEEEEESSGGGC
T ss_pred ceEEEEEEEEcccCCCC----C------------------------------------------CCCeEEEEEeCCCccc
Confidence 47899999999999742 1 89999999943 1
Q ss_pred --eeeeeccccC-CCCCeeece-EEEe-ecCCC-ceEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCCC
Q 004222 92 --TVARTRVLKN-SQEPVWNEH-FNIP-LAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (767)
Q Consensus 92 --~~~~T~~~~~-~~~P~w~e~-~~~~-~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~~ 165 (767)
...||+++.+ +.||+|||+ |.|. +..+. ..|+|+|+|++ +++||++.+||..|..|. ++++|.+..|.
T Consensus 683 ~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~ 756 (816)
T 3qr0_A 683 VRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNR 756 (816)
T ss_dssp EEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSC
T ss_pred ccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCC
Confidence 4569999986 699999998 9998 76554 35999999985 799999999999999774 46888777665
Q ss_pred CCCCCceEEEEEEEEec
Q 004222 166 PPKPGASIQLELKFTPC 182 (767)
Q Consensus 166 ~~~~~g~i~l~l~y~p~ 182 (767)
+. ..++|.+.+.+...
T Consensus 757 ~~-~~atLfv~i~~~~~ 772 (816)
T 3qr0_A 757 PL-GLASVFAHIVAKDY 772 (816)
T ss_dssp EE-EEEEEEEEEEEEEC
T ss_pred CC-CceEEEEEEEEEec
Confidence 52 35788888887754
No 64
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.87 E-value=7.4e-09 Score=123.54 Aligned_cols=113 Identities=21% Similarity=0.355 Sum_probs=88.8
Q ss_pred eccEEEEEEEEeecCCCCCCcchhhhhhccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004222 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (767)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (767)
..+.|+|+|++|++|+.. . +||||+|.+-+
T Consensus 676 ~~~~L~V~Visa~~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 709 (799)
T 2zkm_X 676 VATTLSITVISGQFLSER----S------------------------------------------VRTYVEVELFGLPGD 709 (799)
T ss_dssp TCEEEEEEEEEEESCCSS----C------------------------------------------CCEEEEEEEECCTTS
T ss_pred eeeeEEEEEEeccccCcc----C------------------------------------------CCcEEEEEEEecCCC
Confidence 357899999999999841 1 89999999932
Q ss_pred -eeeeeec-cccC-CCCCeeec-eEEE-eecCCCc-eEEEEEEEcCCCCCceeEEEEcccccccCCceeEEEEEccCCCC
Q 004222 91 -ATVARTR-VLKN-SQEPVWNE-HFNI-PLAHPLS-NLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (767)
Q Consensus 91 -~~~~~T~-~~~~-~~~P~w~e-~~~~-~~~~~~~-~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~l~~~~~ 164 (767)
..+.||+ ++++ +.||+||| .|.| .+..+.. .|+|.|+|+| +++||.+.|||..|..|. +|++|.+..|
T Consensus 710 ~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g 783 (799)
T 2zkm_X 710 PKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESN 783 (799)
T ss_dssp CCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTC
T ss_pred cccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCCc---EEEeccCCCC
Confidence 1346999 7765 69999999 6999 7866543 5999999997 899999999999998763 5788876666
Q ss_pred CCCCCCceEEEEEEEE
Q 004222 165 SPPKPGASIQLELKFT 180 (767)
Q Consensus 165 ~~~~~~g~i~l~l~y~ 180 (767)
.+. ..++|.+.+.+.
T Consensus 784 ~~~-~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 784 MPL-TMPALFIFLEMK 798 (799)
T ss_dssp CEE-EEEEEEEEEEEE
T ss_pred CCC-CceEEEEEEEEE
Confidence 542 357788887764
No 65
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.46 E-value=3.2e-07 Score=106.40 Aligned_cols=120 Identities=12% Similarity=0.159 Sum_probs=87.0
Q ss_pred HHHHHHHHHhccc-----eEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCC
Q 004222 563 QTAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKT 637 (767)
Q Consensus 563 ~~~~~~~I~~A~~-----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~ 637 (767)
+..++++|++|++ +|+++ .|.++. + ..++.+|++|+++| |+|+||++..+ ..+.
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~t-lYr~~~-----d-----------s~Iv~ALi~AA~rG--v~V~vLvel~a--rfde 412 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRLT-QYRVAE-----N-----------SSIISALEAAAQSG--KKVSVFVELKA--RFDE 412 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEE-ESCCCS-----C-----------CHHHHHHHHHHHTT--CEEEEEECCCS--CC--
T ss_pred HHHHHHHHHHhccCCCceEEEEE-EEEEcC-----C-----------HHHHHHHHHHHHCC--CEEEEEEeCCC--Ccch
Confidence 4789999999999 99975 455532 1 25677888887755 99999999421 1111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEE
Q 004222 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (767)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~I 717 (767)
.+ .. ...+.|.++|++| +|.+ ....+|+|++|
T Consensus 413 e~--------ni-------~wa~~Le~aGv~V-------v~g~--------------------------~~lk~H~Ki~l 444 (705)
T 2o8r_A 413 EN--------NL-------RLSERMRRSGIRI-------VYSM--------------------------PGLKVHAKTAL 444 (705)
T ss_dssp ----------CH-------HHHHHHHHHTCEE-------EECC--------------------------TTCCBCCCEEE
T ss_pred hh--------hH-------HHHHHHHHCCCEE-------EEcc--------------------------CCCCceeEEEE
Confidence 00 00 1267889999986 3422 13468999999
Q ss_pred Eeee---------EeeeccCCcCCcCCCCCCCccceeeecCCccc
Q 004222 718 VDDE---------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (767)
Q Consensus 718 VDd~---------~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (767)
||++ ++.+|+.||+..++.. -+++++++.+|+++
T Consensus 445 Idrr~~~~g~~~~y~~igtGN~n~~tari--y~D~~l~t~~~~i~ 487 (705)
T 2o8r_A 445 ILYHTPAGERPQGIALLSTGNFNETTARI--YSDTTLMTANTDIV 487 (705)
T ss_dssp EEECCCSSSCCCEEEEEESSCSSCCCSSC--EEEEEEEECCHHHH
T ss_pred EecccccCCceeEEEeccccceeeeEEEE--EeeeeeeecChHHH
Confidence 9998 5789999999999874 48999999999874
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=97.23 E-value=0.00014 Score=78.43 Aligned_cols=110 Identities=9% Similarity=0.004 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004222 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (767)
Q Consensus 559 ~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~~~~~~~d~~ 638 (767)
...|...+.++|.+|++.|++..++... ..+...+.++++ |||+|++|++.. ++..
T Consensus 117 ~~~I~~ri~eli~~A~~eI~i~~~~~~l------------------~~l~~~L~~a~~--RGV~Vrvi~~~~----~d~a 172 (342)
T 3qph_A 117 FDEAIEMFRESLYSAKNEVIVVTPSEFF------------------ETIREDLIKTLE--RGVTVSLYIDKI----PDLS 172 (342)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECHHHH------------------HHHHHHHHHHHH--TTCEEEEEESSC----CCCG
T ss_pred HHHHHHHHHHHHHhhheEEEEEeCHHHH------------------HHHHHHHHHHHh--CCCEEEEEECCC----CChh
Confidence 4789999999999999999998765331 123344555555 559999999853 2211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCCccceEEeeeEEEE
Q 004222 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (767)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (767)
.. . +. ....++++ + . .+.+ ++|+
T Consensus 173 ~~---------~--------~~-~~~~~vR~--------~--------------------------~-~~p~----l~iv 195 (342)
T 3qph_A 173 EF---------K--------GK-GNFFVRQF--------Y--------------------------K-LNHL----IGMT 195 (342)
T ss_dssp GG---------S--------SS-SEEEEEEC--------S--------------------------C-CCSE----EEEE
T ss_pred hh---------h--------cc-ccceEEEE--------c--------------------------C-CCcE----EEEE
Confidence 00 0 00 01112221 1 1 1223 5999
Q ss_pred eeeEeeeccCCc-C---CcCCCCCCCccceeeecCCcc
Q 004222 719 DDEYVIMGSANI-N---QRSMAGSKDTEIAMGSYQPHH 752 (767)
Q Consensus 719 Dd~~~~IGSaNl-d---~RS~~~n~d~E~~v~i~~p~~ 752 (767)
|++++++|++|+ + .||+.. ++| +++++++.+
T Consensus 196 D~~~alv~~~~~~~~~~~rS~~~--~~e-aliv~~~~l 230 (342)
T 3qph_A 196 DGKEVVTIQNATFDSIGPPSFKS--TYP-EIIFSQYSL 230 (342)
T ss_dssp TTTEEEEECSSSCCSSCCCEEEE--CCH-HHHHHHHHH
T ss_pred ECCEEEEeccccccccccccccc--ccc-EEEEECHHH
Confidence 999999999998 4 499974 488 999998887
No 67
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=96.68 E-value=0.0016 Score=70.05 Aligned_cols=48 Identities=27% Similarity=0.202 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEE
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv 305 (767)
+.....+.++|.+|+++|++..|.-. ...+.++|.+|++|||+|++++
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~~~-----------------l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPSEF-----------------FETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECHHH-----------------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhhheEEEEEeCHHH-----------------HHHHHHHHHHHHhCCCEEEEEE
Confidence 67789999999999999999876311 1578899999999999999997
No 68
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=94.04 E-value=0.07 Score=53.87 Aligned_cols=49 Identities=24% Similarity=0.108 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceEEeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEe
Q 004222 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVW 306 (767)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~d~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~ 306 (767)
+...+.+.++|++|+++|++..|. .. -.+|.+.|.+|++|||.|+|+++
T Consensus 9 e~Ii~r~~e~I~~A~~el~lsi~~--e~---------------l~~l~~~L~~A~~rGV~V~liv~ 57 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVVTPS--EF---------------FETIREDLIKTLERGVTVSLYID 57 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECG--GG---------------HHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHHHhhhEEEEEeCH--HH---------------HHHHHHHHHHHHHCCCEEEEEEc
Confidence 677889999999999999997662 21 16899999999999999999983
No 69
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=93.96 E-value=0.083 Score=52.57 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=35.1
Q ss_pred eEEeeeEEEE---eeeEeeeccCCcCCcCCCCCCCccceeeecCCc
Q 004222 709 IYVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 751 (767)
Q Consensus 709 ~~~HsK~~IV---Dd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~ 751 (767)
..+|+|+... |+..++|||.||+.-.|.. |-|++|+++++.
T Consensus 102 Ri~HaK~Yg~~~n~g~~LIV~SgNfT~pGmsQ--NvE~sllld~~T 145 (358)
T 2c1l_A 102 RILHAKLYGTSNNLGESLVVSSGNFTGPGMSQ--NIEASLLLDNNT 145 (358)
T ss_dssp SCBCCEEEEEEETTEEEEEEESCCBSTTTTTT--SBEEEEEECHHH
T ss_pred eecchhhhcccCCCceEEEEecCCcccccccc--ceeEEEEEcCCC
Confidence 4789998876 4779999999999999984 599999998873
No 70
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=85.73 E-value=3.9 Score=40.82 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=71.8
Q ss_pred CCcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHHHhhhcCCCceEEecccccCcccchhhhccccce
Q 004222 284 DLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTI 363 (767)
Q Consensus 284 ~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~ 363 (767)
+-+|.+.+.+...+|++|.+++ -+..+.. ..+++..+++...||++++.++..
T Consensus 50 gvrfy~~f~~h~~~Ggkv~~Il-GgstsQr-----------lTSKQavEElL~cGvev~IiNrkR--------------- 102 (358)
T 2c1l_A 50 GVRFYETFTEHINQGGRVIAIL-GGSTSQR-----------LSSRQVVEELLNRGVEVHIINRKR--------------- 102 (358)
T ss_dssp TTTTHHHHHHHHHTTCEEEEEE-ECCSSSC-----------CBBHHHHHHHHHTTCEEEEEECSS---------------
T ss_pred ceeecHHHHHHHhcCCcEEEEE-ccccccc-----------ccHHHHHHHHHhcCCceEEeeeee---------------
Confidence 3799999999999999999997 3332222 124678888999999998764321
Q ss_pred eeccceEEEeccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh
Q 004222 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP 443 (767)
Q Consensus 364 ~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~W~D~~vri~Gp 443 (767)
-.|.|+...-.. +....+||+-|++..-. ...-+++++++-+
T Consensus 103 -i~HaK~Yg~~~n-----~g~~LIV~SgNfT~pGm--------------------------------sQNvE~sllld~~ 144 (358)
T 2c1l_A 103 -ILHAKLYGTSNN-----LGESLVVSSGNFTGPGM--------------------------------SQNIEASLLLDNN 144 (358)
T ss_dssp -CBCCEEEEEEET-----TEEEEEEESCCBSTTTT--------------------------------TTSBEEEEEECHH
T ss_pred -ecchhhhcccCC-----CceEEEEecCCcccccc--------------------------------ccceeEEEEEcCC
Confidence 179999887553 22378999999987322 1234788999888
Q ss_pred HHHHHH
Q 004222 444 AAYDVL 449 (767)
Q Consensus 444 av~dl~ 449 (767)
.+..|.
T Consensus 145 Tt~~mg 150 (358)
T 2c1l_A 145 TTQSMG 150 (358)
T ss_dssp HHHHHT
T ss_pred CccccC
Confidence 776543
No 71
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=81.13 E-value=11 Score=37.16 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=33.1
Q ss_pred eeeeeccccCCCCCeeeceEEEeecCCC---ceEEEEEEEcCC
Q 004222 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDV 131 (767)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~ 131 (767)
..++|.|...+.+|.|+|++.+.++... ..|.|++++...
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 3468999999999999999999998764 339999988654
No 72
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=73.54 E-value=6.9 Score=39.18 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHhccceEEEeccccccccCCCcccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecC
Q 004222 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (767)
Q Consensus 559 ~~~i~~~~~~~I~~A~~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~~~~l~~~~~~grgV~V~Illp~ 629 (767)
...+.+...++|++|++.|+|+.+ ++. -..+...|.+|.+ |||.|.|++..
T Consensus 8 ~e~Ii~r~~e~I~~A~~el~lsi~---------~e~---------l~~l~~~L~~A~~--rGV~V~liv~~ 58 (233)
T 2f5t_X 8 FDEAIEMFRESLYSAKNEVIVVTP---------SEF---------FETIREDLIKTLE--RGVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEC---------GGG---------HHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred HHHHHHHHHHHHHHhhhEEEEEeC---------HHH---------HHHHHHHHHHHHH--CCCEEEEEEcC
Confidence 468889999999999999999532 222 2345666777765 55999999985
No 73
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=64.75 E-value=39 Score=31.41 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=65.3
Q ss_pred EEEEEECCeeeeeeccccCCCCCeeeceEEEeecCCC--------ceEEEEEEEcCCCCCceeEEEEccccccc-CCcee
Q 004222 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------SNLEIQVKDDDVFGAQIIGTAAIPAHTIA-TGELI 153 (767)
Q Consensus 83 yv~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--------~~l~~~v~d~~~~~~~~iG~~~~~l~~~~-~~~~~ 153 (767)
||.+.+-+-..+-|.++. ..+|.+|-+-++.+.... ..+.|+|..........||.+.|+|.++. ..+.+
T Consensus 45 F~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~i 123 (156)
T 2yrb_A 45 FCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGRI 123 (156)
T ss_dssp EEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSCE
T ss_pred EEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCce
Confidence 555555444434555555 889999988888775532 24888887765434589999999999987 33345
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEEEe
Q 004222 154 SRWYDIIAPSGSPPKPGASIQLELKFTP 181 (767)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~y~p 181 (767)
..-.+|.+..+. +..-|+|...++...
T Consensus 124 ~g~~~L~g~~g~-~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 124 FCTASLIGTKGD-IPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEECBSSSC-CTTSEEEEEEEEEEE
T ss_pred EEEEEEEcCCCC-cceEEEEEEEEEEec
Confidence 566677665542 135788888888654
No 74
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=56.88 E-value=41 Score=40.51 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=44.1
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeeceEEEeecCC----CceEEEEEEEcCCC-------------CCcee
Q 004222 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVF-------------GAQII 137 (767)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~-------------~~~~i 137 (767)
.+-||++.+ ++... ..|..+.-+.+|.|||.++|++.-. ...|.|+||+.... ....|
T Consensus 235 ~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~l 314 (940)
T 2wxf_A 235 MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPI 314 (940)
T ss_dssp CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC----------------CEEE
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecCCccCccccccccccccceE
Confidence 567888777 44221 2455555577899999999986542 23499999985321 13477
Q ss_pred EEEEcccccc
Q 004222 138 GTAAIPAHTI 147 (767)
Q Consensus 138 G~~~~~l~~~ 147 (767)
|.+.++|-+.
T Consensus 315 g~~~~~lFd~ 324 (940)
T 2wxf_A 315 AWANLMLFDY 324 (940)
T ss_dssp EEEEEESBCT
T ss_pred EEEeeeEECC
Confidence 7777777543
No 75
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=53.83 E-value=4.4 Score=45.72 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=30.4
Q ss_pred cceEEeeeEEEE---------e---e----eEeeeccCCcCCcCCCC----CCCccceeee
Q 004222 707 FMIYVHAKGMIV---------D---D----EYVIMGSANINQRSMAG----SKDTEIAMGS 747 (767)
Q Consensus 707 ~~~~~HsK~~IV---------D---d----~~~~IGSaNld~RS~~~----n~d~E~~v~i 747 (767)
...+.|.|+++- | | .|+++|||||..-.+.. -++.|++|++
T Consensus 427 ~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k~irnyElGVL~ 487 (544)
T 1q32_A 427 GTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLY 487 (544)
T ss_dssp TTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEE
T ss_pred CCccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhccccceEeEEEe
Confidence 457889999873 2 1 38999999998765431 1479999999
No 76
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=40.86 E-value=92 Score=38.01 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=43.3
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeeeceEEEeecCC----CceEEEEEEEcCCC-----CCceeEEEEcccc
Q 004222 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVF-----GAQIIGTAAIPAH 145 (767)
Q Consensus 80 ~dpyv~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~-----~~~~iG~~~~~l~ 145 (767)
.+-||++.+ +++. ..+|+.+. ..+|.|||..+|++.-. ...|.|+||+.... ....||.+.++|-
T Consensus 375 ~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 375 DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp CCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred ceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 577888888 3322 12344333 45788999999986542 23499999986543 1357888888876
Q ss_pred ccc
Q 004222 146 TIA 148 (767)
Q Consensus 146 ~~~ 148 (767)
+..
T Consensus 454 d~~ 456 (1091)
T 3hhm_A 454 DYT 456 (1091)
T ss_dssp CTT
T ss_pred ccC
Confidence 543
No 77
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=35.63 E-value=1.1e+02 Score=36.82 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=43.1
Q ss_pred CCcEEEEEE--CCeee--eeeccccCCCCCeeeceEEEeecCC----CceEEEEEEEcCCC-----------------CC
Q 004222 80 SDPYVTVVV--PQATV--ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVF-----------------GA 134 (767)
Q Consensus 80 ~dpyv~v~~--~~~~~--~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~-----------------~~ 134 (767)
.+-||++.+ ++... .+|..+.-+.+|.|||.++|++.-. ...|.|+||+.... ..
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGAKPALSGKTSAEMPSPESKGKA 317 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEEEC--------------------
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEecccCccccccccccccccccccc
Confidence 567888766 44332 2455555577899999999986542 23489999974321 13
Q ss_pred ceeEEEEccccccc
Q 004222 135 QIIGTAAIPAHTIA 148 (767)
Q Consensus 135 ~~iG~~~~~l~~~~ 148 (767)
..||.+.++|-+..
T Consensus 318 ~~lg~~n~~lfd~~ 331 (961)
T 1e7u_A 318 QLLYYVNLLLIDHR 331 (961)
T ss_dssp CEEEEEEEESBCTT
T ss_pred eeEEEEeeeeecCC
Confidence 46777777665433
No 78
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=29.71 E-value=17 Score=40.14 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=25.9
Q ss_pred eeeccceEEEeccCCCCCCcceEEEEccccCCCcccCC
Q 004222 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (767)
Q Consensus 363 ~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (767)
..+||.|++|.=.. +....+|-+.|+...-|..
T Consensus 115 fGthHsKmmiL~y~-----~glRVVI~TANL~~~DW~~ 147 (464)
T 1jy1_A 115 FGTHHTKMMLLLYE-----EGLRVVIHTSNLIHADWHQ 147 (464)
T ss_dssp TCCBCCCEEEEEES-----SCEEEEEECCCBSGGGGTS
T ss_pred ccccchhhheeecC-----CceEEEEeCCCCChhHhcc
Confidence 35799999999664 2268999999999977743
No 79
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=24.01 E-value=66 Score=39.33 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=32.9
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeeceEEEeecCCC----ceEEEEEEEc
Q 004222 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDD 129 (767)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~ 129 (767)
.+-||++.+ ++... .+|..+.-+.+|.|||.++|++.-.. ..|.|+||+.
T Consensus 371 ~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~ 429 (1092)
T 2y3a_A 371 VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV 429 (1092)
T ss_dssp CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence 456666555 44322 24555555778999999999866532 3489999875
No 80
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=21.69 E-value=30 Score=38.13 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=32.6
Q ss_pred ceEEeeeEEE-Ee---------------eeEeeeccCCcCCcCCCC----CCCccceeeecCCcc
Q 004222 708 MIYVHAKGMI-VD---------------DEYVIMGSANINQRSMAG----SKDTEIAMGSYQPHH 752 (767)
Q Consensus 708 ~~~~HsK~~I-VD---------------d~~~~IGSaNld~RS~~~----n~d~E~~v~i~~p~~ 752 (767)
...-|.|+.+ +. =.|+++|||||..-.+.. -++.|++|++....|
T Consensus 351 ~a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~LlTSaNLSkaAWG~l~k~irsYElGVL~~p~~~ 415 (470)
T 3sq7_A 351 TTPANSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLYHSRRL 415 (470)
T ss_dssp TCCBCCEEEEEEEC--------CCTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEEEGGGS
T ss_pred CcCCceEEEEEecccccccccccCCCceeeEEEEecccCCHHHhhhhccCCcceeeeEEEccccc
Confidence 3566999988 22 139999999997644321 367999999987765
No 81
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.56 E-value=98 Score=26.54 Aligned_cols=45 Identities=18% Similarity=0.399 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHhcCCEEEEEEeCCCCccCccccccCcccccCcHHHHhhhcCCCceEEe
Q 004222 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL 343 (767)
Q Consensus 285 ~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 343 (767)
.-+.+.+.+|.+|||+|-++ |+....-. .++....+++.|+.++.
T Consensus 90 ewikdfieeakergvevfvv-ynnkdddr-------------rkeaqqefrsdgvdvrt 134 (162)
T 2l82_A 90 EWIKDFIEEAKERGVEVFVV-YNNKDDDR-------------RKEAQQEFRSDGVDVRT 134 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-EECSCHHH-------------HHHHHHHHCCSSCEEEE
T ss_pred HHHHHHHHHHHhcCcEEEEE-ecCCCchh-------------HHHHHHHhhhcCceeee
Confidence 45677888889999999988 56542111 13455678889999874
Done!