BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004223
         (767 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
            Synthase Type I Multienzyme Complex
 pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
            Synthase Type I Multienzyme Complex
 pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
            Synthase Type I Multienzyme Complex
 pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
 pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
 pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
 pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
            Acyl Carrier Protein At 3.1 Angstrom Resolution
 pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
            Acyl Carrier Protein At 3.1 Angstrom Resolution
 pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
            Acyl Carrier Protein At 3.1 Angstrom Resolution
          Length = 2051

 Score = 30.4 bits (67), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 518  KIDFLMSEGNEEKTSGDFR-EMGFRLAHEVISFVKKKMDKVS----RTVGLRNIKLSFVG 572
            K + +  E NE  TS  FR E G   A +        M+K +    ++ GL     +F G
Sbjct: 1747 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1806

Query: 573  HSIGNIIIRAALA-----ESIME-PYLRYLNTYVSVSGPHLG 608
            HS+G     A+LA     ES++E  + R +   V+V    LG
Sbjct: 1807 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1848


>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
 pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
 pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
          Length = 2006

 Score = 30.0 bits (66), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 518  KIDFLMSEGNEEKTSGDFR-EMGFRLAHEVISFVKKKMDKVS----RTVGLRNIKLSFVG 572
            K + +  E NE  TS  FR E G   A +        M+K +    ++ GL     +F G
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761

Query: 573  HSIGNIIIRAALA-----ESIME-PYLRYLNTYVSVSGPHLG 608
            HS+G     A+LA     ES++E  + R +   V+V    LG
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,928,854
Number of Sequences: 62578
Number of extensions: 971060
Number of successful extensions: 2144
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2142
Number of HSP's gapped (non-prelim): 6
length of query: 767
length of database: 14,973,337
effective HSP length: 106
effective length of query: 661
effective length of database: 8,340,069
effective search space: 5512785609
effective search space used: 5512785609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)