BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004225
(767 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 270/429 (62%), Positives = 311/429 (72%), Gaps = 30/429 (6%)
Query: 356 QKLVSLPGMLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTRED 411
+KL SLP M+ GV+SDD+ LQLEATT FRKLL PP E+VIQSGVV RFV+FLTRED
Sbjct: 71 KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED 130
Query: 412 NPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARS 468
PQLQ EAA ALTNIAS ENT VVID GAVPIFVKLL S SDDVRE+AVWALGN+A
Sbjct: 131 FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD 190
Query: 469 SPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALA 528
SP+ RDLVL+ AL+PLLAQLN+H K SMLRNAT TLS FC+GKP+P F+Q RPALPALA
Sbjct: 191 SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALA 250
Query: 529 QLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXW 588
+L+HSND +VL AC ALS LSDGTNDKIQAVIEA VC
Sbjct: 251 RLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR-- 308
Query: 589 TVRYIVKGDGFLTQC-------------------TGIAKEACRTISNITAGNREQIQVVI 629
TV IV GD TQC I KEAC TISNITAGN++QIQ VI
Sbjct: 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 368
Query: 630 DAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADP 689
+AG+IGPLV+LLQ AEF KKEAA AISNA SGG+H+QIKYLV +GCIKPLCDLL+ D
Sbjct: 369 NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDI 428
Query: 690 EIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEK 749
IVT+CL+GLENILKVGE + + N ++++++ AEG +KIE+L+ HD+N I EK
Sbjct: 429 RIVTVCLEGLENILKVGETDKTLAAGD--VNVFSQMIDEAEGLEKIENLQSHDNNEIYEK 486
Query: 750 AVKILEIYW 758
AVKILE YW
Sbjct: 487 AVKILEAYW 495
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 493 bits (1268), Expect = e-139, Method: Compositional matrix adjust.
Identities = 268/425 (63%), Positives = 308/425 (72%), Gaps = 30/425 (7%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQSGVVARFVEFLTREDNPQL 415
SLP M+ GV+SDD+ LQLEATT FRKLL PP E+VIQSGVV RFV+FLTRED PQL
Sbjct: 37 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q EAA ALTNIAS ENT VVID GAVPIFVKLL S SDDVRE+AVWALGN+A SP+
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH 532
RDLVL+ AL+PLLAQLN+H K SMLRNAT TLS FC+GKP+P F+Q RPALPALA+L+H
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 533 SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVRY 592
SND +VL AC ALS LSDGTNDKIQAVIEA VC TV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR--TVGN 274
Query: 593 IVKGDGFLTQC-------------------TGIAKEACRTISNITAGNREQIQVVIDAGV 633
IV GD TQC I KEAC TISNITAGN++QIQ VI+AG+
Sbjct: 275 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI 334
Query: 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVT 693
IGPLV+LLQ AEF KKEAA AISNA SGG+H+QIKYLV +GCIKPLCDLL+ D IVT
Sbjct: 335 IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 394
Query: 694 ICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKI 753
+CL+GLENILKVGE + + N ++++++ AEG +KIE+L+ HD+N I EKAVKI
Sbjct: 395 VCLEGLENILKVGETDKTLAAGD--VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKI 452
Query: 754 LEIYW 758
LE YW
Sbjct: 453 LEAYW 457
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 333 bits (853), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 209/423 (49%), Positives = 251/423 (59%), Gaps = 33/423 (7%)
Query: 364 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLE 418
M+ ++S QL AT FRKLL PP ++VI + GVVARFVEFL R++N LQ E
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 419 AARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDL 475
+A LTNIAS N T +VI GAVPIF++LLSS +DV+E+AVWALGNIA S RD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 476 VLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP-FDQVRPALPALAQLVHSN 534
VL L PLL +K + +M RNA LS C+GK PP F +V P L L+ L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 535 DNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVRYIV 594
D DVL AC ALS LSDG NDKIQAVI+A VC V IV
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR--AVGNIV 259
Query: 595 KGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGP 636
GD TQ I KEAC TISNITAGNR QIQ VIDA +
Sbjct: 260 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA 319
Query: 637 LVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICL 696
L+ +LQ AEF T+KEAA AI+NA SGG+ EQIKYLV GCIKPLCDLL D +IV + L
Sbjct: 320 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 379
Query: 697 KGLENILKVGEAEMN-TGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILE 755
GLENIL++GE E GT N Y L+E A G KIE L+ H++ I +KA ++E
Sbjct: 380 NGLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE 436
Query: 756 IYW 758
Y+
Sbjct: 437 HYF 439
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 332 bits (852), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 209/423 (49%), Positives = 251/423 (59%), Gaps = 33/423 (7%)
Query: 364 MLAGVWSDDSGLQLEATTWFRKLLL----PPSEKVIQS-GVVARFVEFLTREDNPQLQLE 418
M+ ++S QL AT FRKLL PP ++VI + GVVARFVEFL R++N LQ E
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 419 AARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDL 475
+A LTNIAS N T +VI GAVPIF++LLSS +DV+E+AVWALGNIA S RD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 476 VLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP-FDQVRPALPALAQLVHSN 534
VL L PLL +K + +M RNA LS C+GK PP F +V P L L+ L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 535 DNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVRYIV 594
D DVL AC ALS LSDG NDKIQAVI+A VC V IV
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR--AVGNIV 262
Query: 595 KGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGP 636
GD TQ I KEAC TISNITAGNR QIQ VIDA +
Sbjct: 263 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA 322
Query: 637 LVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICL 696
L+ +LQ AEF T+KEAA AI+NA SGG+ EQIKYLV GCIKPLCDLL D +IV + L
Sbjct: 323 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382
Query: 697 KGLENILKVGEAEMN-TGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILE 755
GLENIL++GE E GT N Y L+E A G KIE L+ H++ I +KA ++E
Sbjct: 383 NGLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE 439
Query: 756 IYW 758
Y+
Sbjct: 440 HYF 442
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 310 bits (794), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 201/427 (47%), Positives = 255/427 (59%), Gaps = 35/427 (8%)
Query: 361 LPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQ-L 415
LP M + SDD QL AT FR++L PP + VIQ+GVV R VEF+ RE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
QLEAA ALTNIAS T VV+D AVP+F++LL + S +V+E+A+WALGN+A S
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG-KPEPPFDQVRPALPALAQLV 531
RD VL A+ P+L N + KPS++R AT TLS C+G KP+P + V ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 532 HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVR 591
+S D + L AC A+S LSDG + IQAVI DV V
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVI--DVRIPKRLVELLSHESTLVQTPALRAVG 236
Query: 592 YIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGV 633
IV G+ TQ I KEAC TISNITAGN EQIQ VIDA +
Sbjct: 237 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 296
Query: 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTH--EQIKYLVRKGCIKPLCDLLLYADPEI 691
I PLV LL+ AE+ TKKEA AISNA SGG + I+YLV +GCIKPLCDLL AD I
Sbjct: 297 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Query: 692 VTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAV 751
+ + L LENILK+GEA+ N N A +E A G +KI + ++++++ I EKA
Sbjct: 357 IEVTLDALENILKMGEADKEARGLN--INENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 752 KILEIYW 758
KI+E Y+
Sbjct: 415 KIIETYF 421
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEK---VIQSGVVARFVEFLTREDNPQLQ 416
+LP + ++S D+ ++A L P E VI + R VE L+ E +Q
Sbjct: 170 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST-LVQ 228
Query: 417 LEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR 473
A RA+ NI + N T VVI+ G +P LLSSP ++++++A W + NI +
Sbjct: 229 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 288
Query: 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVR-----PALPALA 528
V+ + LIP L +L + A+ + A +S G + P D +R + L
Sbjct: 289 QAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP-DIIRYLVSQGCIKPLC 346
Query: 529 QLVHSNDNDVLRYACEAL-SCLSDGTNDK 556
L+ DN ++ +AL + L G DK
Sbjct: 347 DLLEIADNRIIEVTLDALENILKMGEADK 375
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 310 bits (793), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 201/427 (47%), Positives = 254/427 (59%), Gaps = 35/427 (8%)
Query: 361 LPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQ-L 415
LP M + SDD QL AT FR++L PP + VIQ+GVV R VEF+ RE+ P+ L
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 147
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
QLEAA ALTNIAS T VV+D AVP+F++LL + S +V+E+A+WALGN+A S
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG-KPEPPFDQVRPALPALAQLV 531
RD VL A+ P+L N + KPS++R AT TLS C+G KP+P + V ALP LA+L+
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 532 HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVR 591
+S D + L AC A+S LSDG + IQAVI DV V
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVI--DVRIPKRLVELLSHESTLVQTPALRAVG 324
Query: 592 YIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGV 633
IV G+ TQ I KEAC TISNITAGN EQIQ VIDA +
Sbjct: 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 384
Query: 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ--IKYLVRKGCIKPLCDLLLYADPEI 691
I PLV LL+ AE+ TKKEA AISNA SGG I+YLV +GCIKPLCDLL AD I
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444
Query: 692 VTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAV 751
+ + L LENILK+GEA+ N N A +E A G +KI + ++++++ I EKA
Sbjct: 445 IEVTLDALENILKMGEADKEARGLN--INENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502
Query: 752 KILEIYW 758
KI+E Y+
Sbjct: 503 KIIETYF 509
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEK---VIQSGVVARFVEFLTREDNPQLQ 416
+LP + ++S D+ ++A L P E VI + R VE L+ E +Q
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST-LVQ 316
Query: 417 LEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR 473
A RA+ NI + N T VVI+ G +P LLSSP ++++++A W + NI +
Sbjct: 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 376
Query: 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVR-----PALPALA 528
V+ + LIP L +L + A+ + A +S G + P D +R + L
Sbjct: 377 QAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP-DIIRYLVSQGCIKPLC 434
Query: 529 QLVHSNDNDVLRYACEAL-SCLSDGTNDK 556
L+ DN ++ +AL + L G DK
Sbjct: 435 DLLEIADNRIIEVTLDALENILKMGEADK 463
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 309 bits (792), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 200/427 (46%), Positives = 255/427 (59%), Gaps = 35/427 (8%)
Query: 361 LPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQ-L 415
LP M + SDD QL AT FR++L PP + VIQ+GVV R VEF+ RE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
QLEAA ALTNIAS T VV+D AVP+F++LL + S +V+E+A+WALGN+A S
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG-KPEPPFDQVRPALPALAQLV 531
RD VL A+ P+L N + KPS++R AT TLS C+G KP+P + V ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 532 HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVR 591
+S D + L AC A+S LSDG + IQAVI DV V
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVI--DVRIPKRLVELLSHESTLVQTPALRAVG 236
Query: 592 YIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGV 633
IV G+ TQ I KEAC TISNITAGN EQIQ VIDA +
Sbjct: 237 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 296
Query: 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTH--EQIKYLVRKGCIKPLCDLLLYADPEI 691
I PLV LL+ AE+ TKKEA AISNA SGG + I+YLV +GCIKPLCDLL AD I
Sbjct: 297 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Query: 692 VTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAV 751
+ + L LENI+K+GEA+ N N A +E A G +KI + ++++++ I EKA
Sbjct: 357 IEVTLDALENIIKMGEADKEARGLN--INENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 752 KILEIYW 758
KI+E Y+
Sbjct: 415 KIIETYF 421
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEK---VIQSGVVARFVEFLTREDNPQLQ 416
+LP + ++S D+ ++A L P E VI + R VE L+ E +Q
Sbjct: 170 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST-LVQ 228
Query: 417 LEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR 473
A RA+ NI + N T VVI+ G +P LLSSP ++++++A W + NI +
Sbjct: 229 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 288
Query: 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVR-----PALPALA 528
V+ + LIP L +L + A+ + A +S G + P D +R + L
Sbjct: 289 QAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP-DIIRYLVSQGCIKPLC 346
Query: 529 QLVHSNDNDVLRYACEAL-SCLSDGTNDK 556
L+ DN ++ +AL + + G DK
Sbjct: 347 DLLEIADNRIIEVTLDALENIIKMGEADK 375
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 308 bits (788), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 201/427 (47%), Positives = 254/427 (59%), Gaps = 35/427 (8%)
Query: 361 LPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQ-L 415
LP M + SDD QL AT FR++L PP + VIQ+GVV R VEF+ RE+ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 61
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
QLEAA ALTNIAS T VV+D AVP+F++LL + S +V+E+A+WALGN+A S
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG-KPEPPFDQVRPALPALAQLV 531
RD VL A+ P+L N + KPS++R AT TLS C+G KP+P + V ALP LA+L+
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 532 HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVR 591
+S D + L AC A+S LSDG + IQAVI DV V
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVI--DVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 592 YIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGV 633
IV G+ TQ I KEAC TISNITAGN EQIQ VIDA +
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTH--EQIKYLVRKGCIKPLCDLLLYADPEI 691
I PLV LL+ AE TKKEA AISNA SGG + I+YLV +GCIKPLCDLL AD I
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 692 VTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAV 751
+ + L LENILK+GEA+ N N A +E A G +KI + ++++++ I EKA
Sbjct: 359 IEVTLDALENILKMGEADKEARGLN--INENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 752 KILEIYW 758
KI+E Y+
Sbjct: 417 KIIETYF 423
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEK---VIQSGVVARFVEFLTREDNPQLQ 416
+LP + ++S D+ ++A L P E VI + R VE L+ E +Q
Sbjct: 172 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST-LVQ 230
Query: 417 LEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR 473
A RA+ NI + N T VVI+ G +P LLSSP ++++++A W + NI +
Sbjct: 231 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 290
Query: 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVR-----PALPALA 528
V+ + LIP L +L + A+ + A +S G + P D +R + L
Sbjct: 291 QAVI-DANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRP-DIIRYLVSQGCIKPLC 348
Query: 529 QLVHSNDNDVLRYACEAL-SCLSDGTNDK 556
L+ DN ++ +AL + L G DK
Sbjct: 349 DLLEIADNRIIEVTLDALENILKMGEADK 377
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 307 bits (787), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 201/427 (47%), Positives = 254/427 (59%), Gaps = 35/427 (8%)
Query: 361 LPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQ-L 415
LP M + SDD QL AT FR++L PP + VIQ+GVV R VEF+ RE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
QLEAA ALTNIAS T VV+D AVP+F++LL + S +V+E+A+WALGN+A S
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG-KPEPPFDQVRPALPALAQLV 531
RD VL A+ P+L N + KPS++R AT TLS C+G KP+P + V ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 532 HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVR 591
+S D + L AC A+S LSDG + IQAVI DV V
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVI--DVRIPKRLVELLSHESTLVQTPALRAVG 237
Query: 592 YIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGV 633
IV G+ TQ I KEAC TISNITAGN EQIQ VIDA +
Sbjct: 238 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 297
Query: 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTH--EQIKYLVRKGCIKPLCDLLLYADPEI 691
I PLV LL+ AE TKKEA AISNA SGG + I+YLV +GCIKPLCDLL AD I
Sbjct: 298 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Query: 692 VTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAV 751
+ + L LENILK+GEA+ N N A +E A G +KI + ++++++ I EKA
Sbjct: 358 IEVTLDALENILKMGEADKEARGLN--INENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 752 KILEIYW 758
KI+E Y+
Sbjct: 416 KIIETYF 422
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEK---VIQSGVVARFVEFLTREDNPQLQ 416
+LP + ++S D+ ++A L P E VI + R VE L+ E +Q
Sbjct: 171 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST-LVQ 229
Query: 417 LEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR 473
A RA+ NI + N T VVI+ G +P LLSSP ++++++A W + NI +
Sbjct: 230 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 289
Query: 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVR-----PALPALA 528
V+ + LIP L +L + A+ + A +S G + P D +R + L
Sbjct: 290 QAVI-DANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRP-DIIRYLVSQGCIKPLC 347
Query: 529 QLVHSNDNDVLRYACEAL-SCLSDGTNDK 556
L+ DN ++ +AL + L G DK
Sbjct: 348 DLLEIADNRIIEVTLDALENILKMGEADK 376
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 307 bits (786), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 201/427 (47%), Positives = 254/427 (59%), Gaps = 35/427 (8%)
Query: 361 LPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQ-L 415
LP M + SDD QL AT FR++L PP + VIQ+GVV R VEF+ RE+ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 61
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
QLEAA ALTNIAS T VV+D AVP+F++LL + S +V+E+A+WALGN+A S
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG-KPEPPFDQVRPALPALAQLV 531
RD VL A+ P+L N + KPS++R AT TLS C+G KP+P + V ALP LA+L+
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 532 HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVR 591
+S D + L AC A+S LSDG + IQAVI DV V
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVI--DVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 592 YIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGV 633
IV G+ TQ I KEAC TISNITAGN EQIQ VIDA +
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTH--EQIKYLVRKGCIKPLCDLLLYADPEI 691
I PLV LL+ AE TKKEA AISNA SGG + I+YLV +GCIKPLCDLL AD I
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 692 VTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAV 751
+ + L LENILK+GEA+ N N A +E A G +KI + ++++++ I EKA
Sbjct: 359 IEVTLDALENILKMGEADKEARGLN--INENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 752 KILEIYW 758
KI+E Y+
Sbjct: 417 KIIETYF 423
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEK---VIQSGVVARFVEFLTREDNPQLQ 416
+LP + ++S D+ ++A L P E VI + R VE L+ E +Q
Sbjct: 172 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST-LVQ 230
Query: 417 LEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR 473
A RA+ NI + N T VVI+ G +P LLSSP ++++++A W + NI +
Sbjct: 231 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 290
Query: 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVR-----PALPALA 528
V+ + LIP L +L + A+ + A +S G + P D +R + L
Sbjct: 291 QAVI-DANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRP-DIIRYLVSQGCIKPLC 348
Query: 529 QLVHSNDNDVLRYACEAL-SCLSDGTNDK 556
L+ DN ++ +AL + L G DK
Sbjct: 349 DLLEIADNRIIEVTLDALENILKMGEADK 377
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 307 bits (786), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 201/427 (47%), Positives = 254/427 (59%), Gaps = 35/427 (8%)
Query: 361 LPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQ-L 415
LP M + SDD QL AT FR++L PP + VIQ+GVV R VEF+ RE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
QLEAA ALTNIAS T VV+D AVP+F++LL + S +V+E+A+WALGN+A S
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG-KPEPPFDQVRPALPALAQLV 531
RD VL A+ P+L N + KPS++R AT TLS C+G KP+P + V ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 532 HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVR 591
+S D + L AC A+S LSDG + IQAVI DV V
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVI--DVRIPKRLVELLSHESTLVQTPALRAVG 237
Query: 592 YIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGV 633
IV G+ TQ I KEAC TISNITAGN EQIQ VIDA +
Sbjct: 238 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 297
Query: 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTH--EQIKYLVRKGCIKPLCDLLLYADPEI 691
I PLV LL+ AE TKKEA AISNA SGG + I+YLV +GCIKPLCDLL AD I
Sbjct: 298 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Query: 692 VTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAV 751
+ + L LENILK+GEA+ N N A +E A G +KI + ++++++ I EKA
Sbjct: 358 IEVTLDALENILKMGEADKEARGLN--INENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 752 KILEIYW 758
KI+E Y+
Sbjct: 416 KIIETYF 422
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEK---VIQSGVVARFVEFLTREDNPQLQ 416
+LP + ++S D+ ++A L P E VI + R VE L+ E +Q
Sbjct: 171 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST-LVQ 229
Query: 417 LEAARALTNIASEN---TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR 473
A RA+ NI + N T VVI+ G +P LLSSP ++++++A W + NI +
Sbjct: 230 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 289
Query: 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVR-----PALPALA 528
V+ + LIP L +L + A+ + A +S G + P D +R + L
Sbjct: 290 QAVI-DANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRP-DIIRYLVSQGCIKPLC 347
Query: 529 QLVHSNDNDVLRYACEAL-SCLSDGTNDK 556
L+ DN ++ +AL + L G DK
Sbjct: 348 DLLEIADNRIIEVTLDALENILKMGEADK 376
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 254 bits (649), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 167/433 (38%), Positives = 237/433 (54%), Gaps = 45/433 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 128 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 184
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 185 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 244
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 245 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 302
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 303 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 362
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 363 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 415
Query: 747 CEKAVKILEIYWS 759
+ ++ ++E Y+S
Sbjct: 416 YKASLNLIEKYFS 428
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 167/433 (38%), Positives = 237/433 (54%), Gaps = 45/433 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 127 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 183
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 184 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 243
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 244 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 301
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 302 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 361
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 362 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 414
Query: 747 CEKAVKILEIYWS 759
+ ++ ++E Y+S
Sbjct: 415 YKASLNLIEKYFS 427
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/433 (38%), Positives = 237/433 (54%), Gaps = 45/433 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 123 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 179
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 180 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 239
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 240 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 297
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 298 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 357
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 358 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 410
Query: 747 CEKAVKILEIYWS 759
+ ++ ++E Y+S
Sbjct: 411 YKASLNLIEKYFS 423
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 237/434 (54%), Gaps = 45/434 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 134 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 191 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 251 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 308
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 309 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 368
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 369 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 421
Query: 747 CEKAVKILEIYWSC 760
+ ++ ++E Y+S
Sbjct: 422 YKASLNLIEKYFSV 435
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 237/434 (54%), Gaps = 45/434 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 128 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 184
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 185 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 244
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 245 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 302
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 303 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 362
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 363 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 415
Query: 747 CEKAVKILEIYWSC 760
+ ++ ++E Y+S
Sbjct: 416 YKASLNLIEKYFSV 429
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 237/434 (54%), Gaps = 45/434 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 178 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 234
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 295 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 352
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 353 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 413 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 465
Query: 747 CEKAVKILEIYWSC 760
+ ++ ++E Y+S
Sbjct: 466 YKASLNLIEKYFSV 479
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 237/434 (54%), Gaps = 45/434 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 44 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 164 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 220
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 221 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 280
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 281 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 338
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 339 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 398
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 399 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 451
Query: 747 CEKAVKILEIYWSC 760
+ ++ ++E Y+S
Sbjct: 452 YKASLNLIEKYFSV 465
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 237/434 (54%), Gaps = 45/434 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 178 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 234
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 295 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 352
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 353 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 413 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 465
Query: 747 CEKAVKILEIYWSC 760
+ ++ ++E Y+S
Sbjct: 466 YKASLNLIEKYFSV 479
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 237/434 (54%), Gaps = 45/434 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 178 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 234
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 295 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 352
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 353 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 413 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 465
Query: 747 CEKAVKILEIYWSC 760
+ ++ ++E Y+S
Sbjct: 466 YKASLNLIEKYFSV 479
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 166/432 (38%), Positives = 236/432 (54%), Gaps = 45/432 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 128 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 184
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 185 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 244
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 245 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 302
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 303 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 362
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 363 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 415
Query: 747 CEKAVKILEIYW 758
+ ++ ++E Y+
Sbjct: 416 YKASLNLIEKYF 427
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 166/432 (38%), Positives = 236/432 (54%), Gaps = 45/432 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 127 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 183
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 184 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 243
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 244 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 301
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 302 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 361
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 362 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 414
Query: 747 CEKAVKILEIYW 758
+ ++ ++E Y+
Sbjct: 415 YKASLNLIEKYF 426
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 166/432 (38%), Positives = 236/432 (54%), Gaps = 45/432 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 34 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 94 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 154 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 210
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 211 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 270
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 271 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 328
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 329 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 388
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 389 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 441
Query: 747 CEKAVKILEIYW 758
+ ++ ++E Y+
Sbjct: 442 YKASLNLIEKYF 453
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 166/432 (38%), Positives = 236/432 (54%), Gaps = 45/432 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 123 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 179
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 180 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 239
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 240 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 297
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 298 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 357
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 358 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 410
Query: 747 CEKAVKILEIYW 758
+ ++ ++E Y+
Sbjct: 411 YKASLNLIEKYF 422
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 252 bits (643), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 166/434 (38%), Positives = 237/434 (54%), Gaps = 45/434 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 136
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA +
Sbjct: 137 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 197 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 253
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 254 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 314 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 371
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+K AA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 372 QVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 432 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 484
Query: 747 CEKAVKILEIYWSC 760
+ ++ ++E Y+S
Sbjct: 485 YKASLNLIEKYFSV 498
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 251 bits (642), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 166/432 (38%), Positives = 236/432 (54%), Gaps = 45/432 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S++ QL+AT RKLL PP + +I++G++ +FV FL + D +
Sbjct: 42 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P + LRN T TLS C+ K P PP D V L
Sbjct: 162 RDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 218
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H ND +VL +C A+S L+DG N++I+ V++ V
Sbjct: 219 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 278
Query: 585 XXXWTVRYIVKGDGFLTQ------------------CTGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 279 LR--AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 336
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEAA AI+N SGGT EQI YLV G I+PL +LL
Sbjct: 337 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 396
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+RH++ +
Sbjct: 397 KDTKIIQVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQRHENESV 449
Query: 747 CEKAVKILEIYW 758
+ ++ ++E Y+
Sbjct: 450 YKASLNLIEKYF 461
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 248 bits (634), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 165/434 (38%), Positives = 232/434 (53%), Gaps = 45/434 (10%)
Query: 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQL 415
S+ ++ G+ S + QL+AT RKLL PP + +I++G++ +FV FL R D +
Sbjct: 9 SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 416 QLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472
Q E+A ALTNIAS E T V+DGGA+P F+ LL+SP + E+AVWALGNIA
Sbjct: 69 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 473 RDLVLSEKALIPLLAQLNKHAKPSM-------LRNATKTLSRFCQGK-PEPPFDQVRPAL 524
RDLV+ A+ PLLA L A P M LRN T TLS C+ K P PP D V L
Sbjct: 129 RDLVIKYGAVDPLLALL---AVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQIL 185
Query: 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXX 584
P L +L+H +D +VL C A+S L+DG N++I V++ V
Sbjct: 186 PTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPA 245
Query: 585 XXXWTVRYIVKGDGFLTQC------------------TGIAKEACRTISNITAGNREQIQ 626
+ IV G TQ T I KEA T+SNITAG ++QIQ
Sbjct: 246 LR--AIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ 303
Query: 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686
V++ G++ LV +L A+F T+KEA A++N SGGT EQI YLV G I+PL +LL
Sbjct: 304 QVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTA 363
Query: 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746
D +I+ + L + NI + E T + ++E G KIE L+ H++ +
Sbjct: 364 KDTKIILVILDAISNIFQAAEKLGET-------EKLSIMIEECGGLDKIEALQNHENESV 416
Query: 747 CEKAVKILEIYWSC 760
+ ++ ++E Y+S
Sbjct: 417 YKASLSLIEKYFSV 430
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 606 IAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTH 665
+ + C IS +T G E+I +V+ GV+ LV LL +E A RAI N ++ GT
Sbjct: 199 VLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVT-GTD 257
Query: 666 EQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARL 725
EQ + ++ G + LL I + NI G + N +
Sbjct: 258 EQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVS 316
Query: 726 VEAAEGFKKIED----LKRHDSNGICEKAVKILEIYWSCGVI 763
V + FK ++ + + S G E+ V ++ CG+I
Sbjct: 317 VLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVH----CGII 354
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 82/214 (38%), Positives = 114/214 (53%), Gaps = 17/214 (7%)
Query: 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEK---VIQSGVVARFVEFLTREDNPQLQL 417
LP M + SDD QL AT F ++L +E+ VI +G + V+ L+ N Q+
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 418 EAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRD 474
EA AL+NIAS E VID GA+P V+LLSSP++ + ++A+WAL NIA
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRP-----ALPALAQ 529
V+ AL P L QL +L+ A LS G E Q++ ALPAL Q
Sbjct: 133 AVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVIDAGALPALVQ 187
Query: 530 LVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEA 563
L+ S + +L+ A ALS ++ G N++ QAV EA
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 221
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 73/233 (31%), Positives = 107/233 (45%), Gaps = 40/233 (17%)
Query: 523 ALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXX 582
ALPAL QL+ S + +L+ A ALS ++ G N++IQAVI+A
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ--- 111
Query: 583 XXXXXWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ 642
I +EA +SNI +G EQIQ VIDAG + LV LL
Sbjct: 112 -----------------------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148
Query: 643 NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENI 702
+ +EA A+SN SGG +EQI+ ++ G + L LL + +I+ L L NI
Sbjct: 149 SPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 207
Query: 703 LKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILE 755
G N + V+ A +K+E L+ H++ I ++A + LE
Sbjct: 208 ASGG-------------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 85/300 (28%), Positives = 121/300 (40%), Gaps = 82/300 (27%)
Query: 411 DNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIAR 467
D+ Q QL A R + I S E VID GA+P V+LL
Sbjct: 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-------------------- 63
Query: 468 SSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRP----- 522
SSP ++ +L+ A LS G E Q++
Sbjct: 64 SSPNEQ-----------------------ILQEALWALSNIASGGNE----QIQAVIDAG 96
Query: 523 ALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXX 582
ALPAL QL+ S + +L+ A ALS ++ G N++IQAVI+A
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ--- 153
Query: 583 XXXXXWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ 642
I +EA +SNI +G EQIQ VIDAG + LV LL
Sbjct: 154 -----------------------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 190
Query: 643 NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENI 702
+ +EA A+SN SGG +EQ + + G ++ L L + + +I + LE +
Sbjct: 191 SPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 329 LSTPKLHKVERHGEACWAWKDDL---NTTIQKLV---SLPGMLAGVWSDDSGLQLEATTW 382
LS+P ++ EA WA + N IQ ++ +LP ++ + S + + EA
Sbjct: 63 LSSPNEQILQ---EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 119
Query: 383 FRKLLLPPSEK---VIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVID 436
+ +E+ VI +G + V+ L+ N Q+ EA AL+NIAS E VID
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVID 178
Query: 437 GGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPS 496
GA+P V+LLSSP++ + ++A+WAL NIA S ++ + E + L QL H
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 497 MLRNATKTLSRF 508
+ + A + L +
Sbjct: 238 IQKEAQEALEKL 249
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 610 ACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIK 669
A R S I + EQIQ VIDAG + LV LL + +EA A+SN SGG +EQI+
Sbjct: 32 ATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQ 90
Query: 670 YLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEM 710
++ G + L LL + +I+ L L NI G ++
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 134/309 (43%), Gaps = 79/309 (25%)
Query: 400 VARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVRE 456
V + V+ LT D+ + Q EAAR L IAS ++D G V + VKLL+S +V+
Sbjct: 4 VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQ- 61
Query: 457 KAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP 516
+ A + L+ G P+
Sbjct: 62 ------------------------------------------KEAARALANIASG-PDEA 78
Query: 517 FDQVRPA--LPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXX 574
+ A + L +L+ S D++V + A AL+ ++ G ++ I+A+++A
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA----------- 127
Query: 575 XXXXXXXXXXXXXWTVRYIVKGDGFLTQC-TGIAKEACRTISNITAGNREQIQVVIDAGV 633
V +VK LT + + KEA R ++NI +G E I+ ++DAG
Sbjct: 128 -------------GGVEVLVK---LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGG 171
Query: 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVT 693
+ LV LL + + +KEAARA++N SG T IK +V G ++ L LL D E+
Sbjct: 172 VEVLVKLLTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQK 230
Query: 694 ICLKGLENI 702
+ LENI
Sbjct: 231 EAQRALENI 239
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 112/217 (51%), Gaps = 17/217 (7%)
Query: 355 IQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLLLPPS---EKVIQSGVVARFVEFLTRED 411
++KLV L + S DS Q EA ++ P+ + ++ +G V V+ LT D
Sbjct: 4 VEKLVKL------LTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD 57
Query: 412 NPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARS 468
+ ++Q EAARAL NIAS E ++D G V + VKLL+S +V+++A AL NIA S
Sbjct: 58 S-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-S 115
Query: 469 SPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPA--LPA 526
P + + + + +L +L + + A + L+ G P+ + A +
Sbjct: 116 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEV 174
Query: 527 LAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEA 563
L +L+ S D++V + A AL+ ++ G I+A+++A
Sbjct: 175 LVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDA 211
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 370 SDDSGLQLEATTWFRKLLLPPSEKV---IQSGVVARFVEFLTREDNPQLQLEAARALTNI 426
S DS +Q EA + P E + + +G V V+ LT D+ ++Q EAARAL NI
Sbjct: 139 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANI 197
Query: 427 ASENTNVV---IDGGAVPIFVKLLSSPSDDVREKAVWALGNI 465
AS T+ + +D G V + KLL+S +V+++A AL NI
Sbjct: 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 65/170 (38%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 402 RFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKA 458
+ V+ L D +LQ A R L+ IAS E VID GA+P V+LLSSP++ + ++A
Sbjct: 16 QMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 459 VWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518
+WAL NIA V+ AL P L QL +L+ A LS G E
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNE---- 129
Query: 519 QVRP-----ALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEA 563
Q++ ALPAL QL+ S + +L+ A ALS ++ G N++ QAV EA
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 179
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 27/186 (14%)
Query: 524 LPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXX 583
LP + Q ++S D L+ A LS ++ G N++IQAVI+A
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ---- 69
Query: 584 XXXXWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQN 643
I +EA +SNI +G EQIQ VIDAG + LV LL +
Sbjct: 70 ----------------------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 107
Query: 644 AEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENIL 703
+EA A+SN SGG +EQI+ ++ G + L LL + +I+ L L NI
Sbjct: 108 PNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 704 KVGEAE 709
G +
Sbjct: 167 SGGNEQ 172
Score = 69.3 bits (168), Expect = 8e-12, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 35/190 (18%)
Query: 483 IPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRP-----ALPALAQLVHSNDND 537
+P + Q L++A + LS+ G E Q++ ALPAL QL+ S +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNE----QIQAVIDAGALPALVQLLSSPNEQ 69
Query: 538 VLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVRYIVKGD 597
+L+ A ALS ++ G N++IQAVI+A
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ------------------ 111
Query: 598 GFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAIS 657
I +EA +SNI +G EQIQ VIDAG + LV LL + +EA A+S
Sbjct: 112 --------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Query: 658 NAISGGTHEQ 667
N SGG ++
Sbjct: 164 NIASGGNEQK 173
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 608 KEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ 667
+ A R +S I +G EQIQ VIDAG + LV LL + +EA A+SN SGG +EQ
Sbjct: 30 QSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ 88
Query: 668 IKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEM 710
I+ ++ G + L LL + +I+ L L NI G ++
Sbjct: 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 65/170 (38%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 402 RFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKA 458
+ V+ L D +LQ A R L+ IAS E VID GA+P V+LLSSP++ + ++A
Sbjct: 16 QMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 459 VWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518
+WAL NIA V+ AL P L QL +L+ A LS G E
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNE---- 129
Query: 519 QVRP-----ALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEA 563
Q++ ALPAL QL+ S + +L+ A ALS ++ G N++ QAV EA
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 179
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 103/232 (44%), Gaps = 40/232 (17%)
Query: 524 LPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXX 583
LP + Q ++S D L+ A LS ++ G N++IQAVI+A
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ---- 69
Query: 584 XXXXWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQN 643
I +EA +SNI +G EQIQ VIDAG + LV LL +
Sbjct: 70 ----------------------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 107
Query: 644 AEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENIL 703
+EA A+SN SGG +EQI+ ++ G + L LL + +I+ L L NI
Sbjct: 108 PNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 704 KVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILE 755
G N + V+ A +K+E L+ H++ I ++A + LE
Sbjct: 167 SGG-------------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 36/225 (16%)
Query: 483 IPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRP-----ALPALAQLVHSNDND 537
+P + Q L++A + LS+ G E Q++ ALPAL QL+ S +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNE----QIQAVIDAGALPALVQLLSSPNEQ 69
Query: 538 VLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXXXXXXXWTVRYIVKGD 597
+L+ A ALS ++ G N++IQAVI+A
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ------------------ 111
Query: 598 GFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAIS 657
I +EA +SNI +G EQIQ VIDAG + LV LL + +EA A+S
Sbjct: 112 --------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Query: 658 NAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENI 702
N SGG +EQ + + G ++ L L + + +I + LE +
Sbjct: 164 NIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 392 EKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLS 448
+ VI +G + V+ L+ N Q+ EA AL+NIAS E VID GA+P V+LLS
Sbjct: 90 QAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148
Query: 449 SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRF 508
SP++ + ++A+WAL NIA S ++ + E + L QL H + + A + L +
Sbjct: 149 SPNEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 62/161 (38%), Positives = 85/161 (52%), Gaps = 13/161 (8%)
Query: 411 DNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIAR 467
D+ Q QL A R + I S E VID GA+P V+LLSSP++ + ++A+WAL NIA
Sbjct: 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83
Query: 468 SSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRP----- 522
V+ AL P L QL +L+ A LS G E Q++
Sbjct: 84 GGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVIDAG 138
Query: 523 ALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEA 563
ALPAL QL+ S + +L+ A ALS ++ G N++ QAV EA
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 179
Score = 85.9 bits (211), Expect = 8e-17, Method: Composition-based stats.
Identities = 72/197 (36%), Positives = 98/197 (49%), Gaps = 11/197 (5%)
Query: 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEK---VIQSGVVARFVEFLTREDNPQLQL 417
LP M + SDD QL AT F ++L +E+ VI +G + V+ L+ N Q+
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 418 EAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRD 474
EA AL+NIAS E VID GA+P V+LLSSP++ + ++A+WAL NIA
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRP--ALPALAQLVH 532
V+ AL P L QL +L+ A LS G E V+ AL L QL
Sbjct: 133 AVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQS 190
Query: 533 SNDNDVLRYACEALSCL 549
+ + + A EAL L
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 70/233 (30%), Positives = 102/233 (43%), Gaps = 42/233 (18%)
Query: 524 LPALAQLVHSNDNDVLRYACEALS-CLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXX 582
LP + Q ++S+D A S LSDG N++IQAVI+A
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQ--- 69
Query: 583 XXXXXWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ 642
I +EA +SNI +G EQIQ VIDAG + LV LL
Sbjct: 70 -----------------------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106
Query: 643 NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENI 702
+ +EA A+SN SGG +EQI+ ++ G + L LL + +I+ L L NI
Sbjct: 107 SPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Query: 703 LKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILE 755
G N + V+ A +K+E L+ H++ I ++A + LE
Sbjct: 166 ASGG-------------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 27/180 (15%)
Query: 523 ALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCXXXXXXXXXXXXXXXX 582
ALPAL QL+ S + +L+ A ALS ++ G N++IQAVI+A
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ--- 111
Query: 583 XXXXXWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ 642
I +EA +SNI +G EQIQ VIDAG + LV LL
Sbjct: 112 -----------------------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148
Query: 643 NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENI 702
+ +EA A+SN SGG +EQ + + G ++ L L + + +I + LE +
Sbjct: 149 SPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 415 LQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRD 474
L E A+A +A E +V +P+ + + +AL IA+++P
Sbjct: 86 LTQEIAKAFGQMAKEKPELV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143
Query: 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSN 534
++ + + +L+ N+ K + L F + E F V P LP + L+H
Sbjct: 144 SIVRD--FMSMLSSKNREDKLTALN--------FIEAMGENSFKYVNPFLPRIINLLHDG 193
Query: 535 DNDVLRYACEALSCLSDGTNDKIQAVI 561
D V A EAL L+ NDK++ V+
Sbjct: 194 DEIVRASAVEALVHLA-TLNDKLRKVV 219
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK--HAKPS 496
A+P ++L+ PS VR+ A W +G I P + +++ L PLL L + A+P
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 340
Query: 497 MLRNATKTLSRFCQGKPEP---PFDQVRPA 523
+ N S + E DQ PA
Sbjct: 341 VASNVCWAFSSLAEAAYEAADVADDQEEPA 370
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK--HAKPS 496
A+P ++L+ PS VR+ A W +G I P + +++ L PLL L + A+P
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 497 MLRNATKTLSRFCQGKPEP---PFDQVRPA 523
+ N S + E DQ PA
Sbjct: 466 VASNVCWAFSSLAEAAYEAADVADDQEEPA 495
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK--HAKPS 496
A+P ++L+ PS VR+ A W +G I P + +++ L PLL L + A+P
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 497 MLRNATKTLSRFCQGKPEP---PFDQVRPA 523
+ N S + E DQ PA
Sbjct: 466 VASNVCWAFSSLAEAAYEAADVADDQEEPA 495
>pdb|1VSY|4 Chain 4, Proteasome Activator Complex
pdb|1VSY|7 Chain 7, Proteasome Activator Complex
pdb|3L5Q|5 Chain 5, Proteasome Activator Complex
pdb|3L5Q|7 Chain 7, Proteasome Activator Complex
Length = 799
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 643 NAEFFTKKEAARAISNAISGGTHEQIKY---LVRKGCIKPLCDLLLYADPEIVTICLKGL 699
N F+TK A +A H ++KY + +G +C L + EIV I L
Sbjct: 288 NNGFWTKPNAK--FVHAFIKSYHGRVKYEEDICARGVTNGIC-LTSFCHEEIVEIFL--- 341
Query: 700 ENILKVGEAEMNTGTANRYFNHYARLVE 727
NI+ +G N AN Y + +A L+E
Sbjct: 342 -NIISLGSQNKNPDIANYYISCFAYLLE 368
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK--HAKPS 496
A+P ++L+ PS VR+ A W +G I P + +++ L PLL L + A+P
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 497 MLRNATKTLSRFCQGKPE 514
+ N S + E
Sbjct: 466 VASNVCWAFSSLAEAAYE 483
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHA------ 493
+P+ +LL V+E + LG IA + +IP L +L H
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGC---------MQGMIPYLPELIPHLIQCLSD 411
Query: 494 KPSMLRNAT-KTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSD 551
K +++R+ T TLSR+ +PP ++P + L + + ++ V AC A + L +
Sbjct: 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHA------ 493
+P+ +LL V+E + LG IA + +IP L +L H
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGC---------MQGMIPYLPELIPHLIQCLSD 449
Query: 494 KPSMLRNAT-KTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSD 551
K +++R+ T TLSR+ +PP ++P + L + + ++ V AC A + L +
Sbjct: 450 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 509
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHA------ 493
+P+ +LL V+E + LG IA + +IP L +L H
Sbjct: 374 LPLLKELLFHHEWVVKESGILVLGAIAEGC---------MQGMIPYLPELIPHLIQCLSD 424
Query: 494 KPSMLRNAT-KTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSD 551
K +++R+ T TLSR+ +PP ++P + L + + ++ V AC A + L +
Sbjct: 425 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 484
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 395 IQSGVVARFVEF---LTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPS 451
+ S V A ++ L +D P ++ AA L A + +P+F L S
Sbjct: 151 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 210
Query: 452 DDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQ 488
D VR AV A NIA+ P++ DL E ++P L Q
Sbjct: 211 DSVRLLAVEACVNIAQLLPQE-DL---EALVMPTLRQ 243
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLL 486
A+P ++L+ PS VR+ A W +G I P + +++ L PLL
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLL 453
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 395 IQSGVVARFVEF---LTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPS 451
+ S V A ++ L +D P ++ AA L A + +P+F L S
Sbjct: 149 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 208
Query: 452 DDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQ 488
D VR AV A NIA+ P++ DL E ++P L Q
Sbjct: 209 DSVRLLAVEACVNIAQLLPQE-DL---EALVMPTLRQ 241
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK--HAKPS 496
A+P ++L+ PS VR+ W +G I P + +++ L PLL L + A+P
Sbjct: 409 AMPTLIELMKDPSVVVRDTTAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 497 MLRNATKTLSRFCQGKPEP---PFDQVRPA 523
+ N S + E DQ PA
Sbjct: 466 VASNVCWAFSSLAEAAYEAADVADDQEEPA 495
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 28/149 (18%)
Query: 369 WSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED--------NPQL----- 415
+ DD+ L A KLL + V+ V V L++++ +PQ+
Sbjct: 4 YQDDAELATRAIPELTKLLNDEDQVVVNKAAV--MVHQLSKKEASRHAIMRSPQMVSAIV 61
Query: 416 -------QLEAAR----ALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWAL 462
+E AR L N++ E + G +P VK+L SP D V A+ L
Sbjct: 62 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 121
Query: 463 GNIARSSPRDRDLVLSEKALIPLLAQLNK 491
N+ + V L ++A LNK
Sbjct: 122 HNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
>pdb|3RQZ|A Chain A, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|B Chain B, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|C Chain C, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
Length = 246
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 443 FVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKH 492
V L + SD R +W+LG+I PR R+ V + L P ++ + H
Sbjct: 16 LVALEAVLSDAGRVDDIWSLGDIVGYGPRPRECVELVRVLAPNISVIGNH 65
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 395 IQSGVVARFVEF---LTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPS 451
+ S V A ++ L +D P ++ AA L A + +P+F L S
Sbjct: 157 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 216
Query: 452 DDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQ 488
D VR AV A NIA+ P++ DL E ++P L Q
Sbjct: 217 DSVRLLAVEACVNIAQLLPQE-DL---EALVMPTLRQ 249
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 395 IQSGVVARFVEF---LTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPS 451
+ S V A ++ L +D P ++ AA L A + +P+F L S
Sbjct: 158 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 217
Query: 452 DDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQ 488
D VR AV A NIA+ P++ DL E ++P L Q
Sbjct: 218 DSVRLLAVEACVNIAQLLPQE-DL---EALVMPTLRQ 250
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 28/149 (18%)
Query: 369 WSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED--------NPQL----- 415
+ DD+ L A KLL + V+ V V L++++ +PQ+
Sbjct: 4 YQDDAELATRAIPELTKLLNDEDQVVVNKAAV--MVHQLSKKEASRHAIMRSPQMVSAIV 61
Query: 416 -------QLEAAR----ALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWAL 462
+E AR L N++ E + G +P VK+L SP D V A+ L
Sbjct: 62 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 121
Query: 463 GNIARSSPRDRDLVLSEKALIPLLAQLNK 491
N+ + V L ++A LNK
Sbjct: 122 HNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 395 IQSGVVARFVEF---LTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPS 451
+ S V A ++ L +D P ++ AA L A + +P+F L S
Sbjct: 158 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 217
Query: 452 DDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQ 488
D VR AV A NIA+ P++ DL E ++P L Q
Sbjct: 218 DSVRLLAVEACVNIAQLLPQE-DL---EALVMPTLRQ 250
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 395 IQSGVVARFVEF---LTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPS 451
+ S V A ++ L +D P ++ AA L A + +P+F L S
Sbjct: 157 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 216
Query: 452 DDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQ 488
D VR AV A NIA+ P++ DL E ++P L Q
Sbjct: 217 DSVRLLAVEACVNIAQLLPQE-DL---EALVMPTLRQ 249
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/150 (18%), Positives = 69/150 (46%), Gaps = 6/150 (4%)
Query: 399 VVARFVEFLTREDNPQLQLEAARALTNIASENTNVVID--GGAVPIFVKLLSSPSDDVRE 456
+ R + ++++ +QLEA + ++ S ++++ + + L+SP VR+
Sbjct: 157 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRK 216
Query: 457 KAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP 516
+ + ALG++ S + L E LL++L+K+ S R + ++ +
Sbjct: 217 RTIIALGHLVMSCGNIVFVDLIEH----LLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 272
Query: 517 FDQVRPALPALAQLVHSNDNDVLRYACEAL 546
+ + +P + + + +D+++ Y +A
Sbjct: 273 GEYLEKIIPLVVKFCNVDDDELREYCIQAF 302
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/150 (18%), Positives = 69/150 (46%), Gaps = 6/150 (4%)
Query: 399 VVARFVEFLTREDNPQLQLEAARALTNIASENTNVVID--GGAVPIFVKLLSSPSDDVRE 456
+ R + ++++ +QLEA + ++ S ++++ + + L+SP VR+
Sbjct: 134 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRK 193
Query: 457 KAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP 516
+ + ALG++ S + L E LL++L+K+ S R + ++ +
Sbjct: 194 RTIIALGHLVMSCGNIVFVDLIEH----LLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 249
Query: 517 FDQVRPALPALAQLVHSNDNDVLRYACEAL 546
+ + +P + + + +D+++ Y +A
Sbjct: 250 GEYLEKIIPLVVKFCNVDDDELREYCIQAF 279
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 28/149 (18%)
Query: 369 WSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED--------NPQL----- 415
+ DD+ L A KLL + V+ V V L++++ +PQ+
Sbjct: 10 YQDDAELATRAIPELTKLLNDEDQVVVNKAAV--MVHQLSKKEASRHAIMRSPQMVSAIV 67
Query: 416 -------QLEAAR----ALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWAL 462
+E AR L N++ E + G +P VK+L SP D V A+ L
Sbjct: 68 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 463 GNIARSSPRDRDLVLSEKALIPLLAQLNK 491
N+ + V L ++A LNK
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNK 156
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 434 VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK 491
+ G +P VK+L SP D V A+ L N+ + V L ++A LNK
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 139
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 28/149 (18%)
Query: 369 WSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED--------NPQL----- 415
+ DD+ L A KLL + V+ V V L++++ +PQ+
Sbjct: 10 YQDDAELATRAIPELTKLLNDEDQVVVNKAAV--MVHQLSKKEASRHAIMRSPQMVSAIV 67
Query: 416 -------QLEAAR----ALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWAL 462
+E AR L N++ E + G +P VK+L SP D V A+ L
Sbjct: 68 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 463 GNIARSSPRDRDLVLSEKALIPLLAQLNK 491
N+ + V L ++A LNK
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNK 156
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 28/149 (18%)
Query: 369 WSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED--------NPQL----- 415
+ DD+ L A KLL + V+ V V L++++ +PQ+
Sbjct: 6 YQDDAELATRAIPELTKLLNDEDQVVVNKAAV--MVHQLSKKEASRHAIMRSPQMVSAIV 63
Query: 416 -------QLEAAR----ALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWAL 462
+E AR L N++ E + G +P VK+L SP D V A+ L
Sbjct: 64 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 463 GNIARSSPRDRDLVLSEKALIPLLAQLNK 491
N+ + V L ++A LNK
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNK 152
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 434 VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK 491
+ G +P VK+L SP D V A+ L N+ + V L ++A LNK
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 139
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 28/149 (18%)
Query: 369 WSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED--------NPQL----- 415
+ DD+ L A KLL + V+ V V L++++ +PQ+
Sbjct: 12 YQDDAELATRAIPELTKLLNDEDQVVVNKAAV--MVHQLSKKEASRHAIMRSPQMVSAIV 69
Query: 416 -------QLEAAR----ALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWAL 462
+E AR L N++ E + G +P VK+L SP D V A+ L
Sbjct: 70 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 463 GNIARSSPRDRDLVLSEKALIPLLAQLNK 491
N+ + V L ++A LNK
Sbjct: 130 HNLLLHQEGAKMAVRLAGGLQKMVALLNK 158
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 434 VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK 491
+ G +P VK+L SP D V A+ L N+ + V L ++A LNK
Sbjct: 86 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 143
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 414 QLQLEAARALTNIASENT---NVVIDGGAVPIFVKLLSSPSDDVREKAVWALG 463
Q Q+ A TN+ +V+ D +P+ + LL P+ DVR A +A+
Sbjct: 132 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAIN 184
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 434 VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK 491
+ G +P VK+L SP D V A+ L N+ + V L ++A LNK
Sbjct: 84 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 141
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 434 VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK 491
+ G +P VK+L SP D V A+ L N+ + V L ++A LNK
Sbjct: 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 28/149 (18%)
Query: 369 WSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED--------NPQL----- 415
+ DD+ L A KLL + V+ V V L++++ +PQ+
Sbjct: 11 YQDDAELATRAIPELTKLLNDEDQVVVNKAAV--MVHQLSKKEASRHAIMRSPQMVSAIV 68
Query: 416 -------QLEAAR----ALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWAL 462
+E AR L N++ E + G +P VK+L SP D V A+ L
Sbjct: 69 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 463 GNIARSSPRDRDLVLSEKALIPLLAQLNK 491
N+ + V L ++A LNK
Sbjct: 129 HNLLLHQEGAKMAVRLAGGLQKMVALLNK 157
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 28/149 (18%)
Query: 369 WSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED--------NPQL----- 415
+ DD+ L A KLL + V+ V V L++++ +PQ+
Sbjct: 9 YQDDAELATRAIPELTKLLNDEDQVVVNKAAV--MVHQLSKKEASRHAIMRSPQMVSAIV 66
Query: 416 -------QLEAAR----ALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWAL 462
+E AR L N++ E + G +P VK+L SP D V A+ L
Sbjct: 67 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 463 GNIARSSPRDRDLVLSEKALIPLLAQLNK 491
N+ + V L ++A LNK
Sbjct: 127 HNLLLHQEGAKMAVRLAGGLQKMVALLNK 155
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 434 VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK 491
+ G +P VK+L SP D V A+ L N+ + V L ++A LNK
Sbjct: 95 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 152
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLR 499
+P+ +LL V+E + LG IA + L E LIP L Q K +++R
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGCXQGXIPYLPE--LIPHLIQCLSDKK-ALVR 455
Query: 500 NAT-KTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSD 551
+ T TLSR+ +PP ++P L + + ++ V AC A + L +
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNKRVQEAACSAFATLEE 509
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,872,433
Number of Sequences: 62578
Number of extensions: 818707
Number of successful extensions: 2415
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1813
Number of HSP's gapped (non-prelim): 340
length of query: 767
length of database: 14,973,337
effective HSP length: 106
effective length of query: 661
effective length of database: 8,340,069
effective search space: 5512785609
effective search space used: 5512785609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)