Query 004225
Match_columns 767
No_of_seqs 396 out of 3632
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 19:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 6.9E-55 1.5E-59 405.4 31.7 399 360-762 72-499 (526)
2 KOG0166 Karyopherin (importin) 100.0 4.1E-54 9E-59 435.9 39.9 395 360-761 67-488 (514)
3 COG5064 SRP1 Karyopherin (impo 100.0 7.6E-38 1.6E-42 291.8 15.4 346 399-761 72-445 (526)
4 KOG0166 Karyopherin (importin) 100.0 1.8E-36 3.9E-41 307.8 26.5 345 400-761 68-438 (514)
5 PLN03200 cellulose synthase-in 100.0 1.9E-33 4E-38 328.0 39.6 391 355-762 185-767 (2102)
6 PLN03200 cellulose synthase-in 100.0 2.6E-31 5.7E-36 310.2 38.3 396 355-761 400-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 1.3E-27 2.8E-32 225.7 24.9 362 354-759 121-493 (550)
8 KOG4224 Armadillo repeat prote 100.0 7.4E-26 1.6E-30 213.9 28.8 333 343-707 151-496 (550)
9 PF05804 KAP: Kinesin-associat 99.9 3.2E-22 7E-27 216.6 33.1 362 372-759 262-649 (708)
10 PF05804 KAP: Kinesin-associat 99.9 4.1E-20 8.8E-25 200.4 28.9 345 351-708 282-653 (708)
11 KOG1048 Neural adherens juncti 99.8 7E-18 1.5E-22 178.1 23.2 378 360-761 234-686 (717)
12 PLN03210 Resistant to P. syrin 99.8 5.9E-18 1.3E-22 202.1 17.4 286 7-344 612-905 (1153)
13 PLN03210 Resistant to P. syrin 99.7 1.7E-17 3.7E-22 198.2 18.4 270 3-326 631-911 (1153)
14 KOG0168 Putative ubiquitin fus 99.7 7.1E-16 1.5E-20 161.8 26.4 365 360-741 168-654 (1051)
15 KOG1048 Neural adherens juncti 99.7 2.4E-14 5.3E-19 151.6 26.6 346 348-736 264-702 (717)
16 PF10508 Proteasom_PSMB: Prote 99.6 1.1E-12 2.3E-17 142.1 33.4 315 401-761 41-368 (503)
17 PF10508 Proteasom_PSMB: Prote 99.6 1E-12 2.2E-17 142.3 33.0 356 360-758 78-461 (503)
18 KOG1222 Kinesin associated pro 99.6 2.6E-13 5.6E-18 134.0 24.3 361 372-759 276-663 (791)
19 KOG2171 Karyopherin (importin) 99.6 5.6E-13 1.2E-17 146.5 27.4 384 354-757 31-502 (1075)
20 PLN00113 leucine-rich repeat r 99.6 1E-14 2.2E-19 174.7 14.7 225 4-261 91-319 (968)
21 PRK09687 putative lyase; Provi 99.6 6.1E-13 1.3E-17 131.7 23.1 255 399-756 24-279 (280)
22 PLN00113 leucine-rich repeat r 99.6 1.4E-14 3.1E-19 173.5 13.6 314 4-341 116-461 (968)
23 KOG4199 Uncharacterized conser 99.6 6.8E-13 1.5E-17 125.5 21.8 277 360-662 146-445 (461)
24 KOG1293 Proteins containing ar 99.6 3.8E-12 8.3E-17 131.5 28.4 380 365-760 15-534 (678)
25 PRK09687 putative lyase; Provi 99.6 9.4E-13 2E-17 130.4 23.0 254 360-701 24-279 (280)
26 KOG4199 Uncharacterized conser 99.5 6.5E-12 1.4E-16 119.0 24.8 307 368-704 116-444 (461)
27 KOG4500 Rho/Rac GTPase guanine 99.5 1.5E-12 3.2E-17 127.3 21.0 348 371-755 54-427 (604)
28 KOG2171 Karyopherin (importin) 99.5 1.7E-11 3.6E-16 135.1 31.4 354 354-755 115-542 (1075)
29 PF04826 Arm_2: Armadillo-like 99.5 1.1E-12 2.3E-17 126.6 18.8 241 477-750 9-253 (254)
30 KOG2122 Beta-catenin-binding p 99.5 2.1E-12 4.5E-17 142.8 23.1 337 363-706 201-603 (2195)
31 KOG1222 Kinesin associated pro 99.5 7.6E-11 1.6E-15 116.9 28.0 332 361-706 306-665 (791)
32 PRK13800 putative oxidoreducta 99.4 2.6E-11 5.7E-16 141.2 28.0 274 360-755 622-895 (897)
33 PF04826 Arm_2: Armadillo-like 99.4 4E-12 8.7E-17 122.6 17.0 196 393-595 7-205 (254)
34 KOG4500 Rho/Rac GTPase guanine 99.4 1.1E-10 2.3E-15 114.5 23.6 379 359-753 87-513 (604)
35 KOG2122 Beta-catenin-binding p 99.4 5.4E-12 1.2E-16 139.6 16.2 259 378-662 317-602 (2195)
36 KOG4341 F-box protein containi 99.4 2.1E-14 4.6E-19 140.4 -4.4 293 7-322 139-440 (483)
37 KOG2023 Nuclear transport rece 99.4 2.3E-11 5E-16 125.2 17.1 300 438-757 128-503 (885)
38 PF01602 Adaptin_N: Adaptin N 99.3 6.8E-11 1.5E-15 132.0 16.9 349 360-758 80-443 (526)
39 cd00020 ARM Armadillo/beta-cat 99.3 9.4E-11 2E-15 102.0 13.9 116 393-510 2-120 (120)
40 PRK13800 putative oxidoreducta 99.3 1.1E-09 2.4E-14 127.7 26.9 243 360-701 653-896 (897)
41 cd00020 ARM Armadillo/beta-cat 99.3 4.9E-11 1.1E-15 103.8 11.2 118 433-551 2-120 (120)
42 KOG4341 F-box protein containi 99.2 8.9E-14 1.9E-18 136.1 -7.4 288 2-315 160-459 (483)
43 PTZ00429 beta-adaptin; Provisi 99.2 1.6E-08 3.4E-13 112.6 32.6 316 360-705 106-434 (746)
44 KOG4194 Membrane glycoprotein 99.2 1.1E-11 2.3E-16 126.5 6.8 299 5-341 101-448 (873)
45 KOG4658 Apoptotic ATPase [Sign 99.2 4.4E-12 9.6E-17 143.9 4.1 291 3-327 542-848 (889)
46 cd00256 VATPase_H VATPase_H, r 99.2 7.2E-09 1.6E-13 106.8 25.5 328 398-759 53-425 (429)
47 KOG2023 Nuclear transport rece 99.2 8.6E-10 1.9E-14 113.9 17.7 317 355-709 126-510 (885)
48 KOG0168 Putative ubiquitin fus 99.2 1.3E-09 2.7E-14 115.7 19.0 255 400-685 169-436 (1051)
49 PF01602 Adaptin_N: Adaptin N 99.2 6.5E-09 1.4E-13 116.1 25.2 289 360-704 43-333 (526)
50 KOG1241 Karyopherin (importin) 99.1 9.8E-09 2.1E-13 108.1 22.9 277 447-742 373-692 (859)
51 cd00256 VATPase_H VATPase_H, r 99.1 2.1E-08 4.6E-13 103.3 23.2 334 363-704 57-425 (429)
52 KOG1293 Proteins containing ar 99.1 1.4E-08 3.1E-13 105.6 20.9 335 409-762 20-494 (678)
53 KOG2759 Vacuolar H+-ATPase V1 99.1 1E-07 2.2E-12 94.3 25.7 327 399-759 66-438 (442)
54 PTZ00429 beta-adaptin; Provisi 99.1 3E-07 6.4E-12 102.6 32.4 347 360-759 69-433 (746)
55 KOG1241 Karyopherin (importin) 99.0 4E-08 8.7E-13 103.7 22.9 322 353-709 125-482 (859)
56 KOG3665 ZYG-1-like serine/thre 99.0 1.1E-08 2.4E-13 113.5 19.4 176 545-758 494-696 (699)
57 KOG0444 Cytoskeletal regulator 99.0 3.7E-11 7.9E-16 123.5 -3.4 264 4-325 101-379 (1255)
58 KOG2160 Armadillo/beta-catenin 99.0 3.5E-08 7.7E-13 96.5 17.0 180 412-593 96-280 (342)
59 PRK15387 E3 ubiquitin-protein 98.9 9.4E-09 2E-13 114.6 12.8 254 7-342 202-455 (788)
60 KOG0444 Cytoskeletal regulator 98.9 6.2E-11 1.3E-15 121.8 -4.9 323 5-363 31-409 (1255)
61 KOG0946 ER-Golgi vesicle-tethe 98.9 5.1E-06 1.1E-10 88.5 30.1 332 359-707 22-402 (970)
62 KOG1061 Vesicle coat complex A 98.8 1E-06 2.2E-11 94.3 24.4 215 360-594 50-267 (734)
63 KOG4658 Apoptotic ATPase [Sign 98.8 2.7E-09 5.9E-14 121.5 5.7 275 3-327 568-866 (889)
64 KOG0946 ER-Golgi vesicle-tethe 98.8 9.1E-07 2E-11 93.9 23.6 333 399-764 23-404 (970)
65 COG5369 Uncharacterized conser 98.8 7E-09 1.5E-13 104.7 7.4 305 417-757 407-739 (743)
66 KOG2160 Armadillo/beta-catenin 98.8 8.3E-07 1.8E-11 87.1 21.4 191 491-707 93-285 (342)
67 KOG1059 Vesicle coat complex A 98.8 1.5E-06 3.2E-11 91.5 24.4 217 361-595 146-365 (877)
68 KOG3665 ZYG-1-like serine/thre 98.8 9.4E-08 2E-12 106.3 16.8 192 461-698 494-691 (699)
69 PRK15387 E3 ubiquitin-protein 98.8 3.3E-08 7.2E-13 110.3 13.1 234 6-319 222-456 (788)
70 KOG3678 SARM protein (with ste 98.8 3.1E-07 6.7E-12 91.4 18.2 275 388-703 170-451 (832)
71 COG5215 KAP95 Karyopherin (imp 98.8 9.1E-07 2E-11 90.4 21.8 352 364-743 226-693 (858)
72 KOG2759 Vacuolar H+-ATPase V1 98.8 4.8E-07 1E-11 89.7 18.0 272 361-662 116-439 (442)
73 PF03224 V-ATPase_H_N: V-ATPas 98.7 6.2E-07 1.3E-11 91.7 17.9 231 439-696 56-306 (312)
74 PF03224 V-ATPase_H_N: V-ATPas 98.6 7.7E-07 1.7E-11 91.0 14.9 236 481-754 56-309 (312)
75 KOG4194 Membrane glycoprotein 98.6 1.1E-08 2.4E-13 105.0 1.2 83 198-291 363-448 (873)
76 KOG4413 26S proteasome regulat 98.6 9.7E-05 2.1E-09 70.9 25.9 333 361-736 84-458 (524)
77 KOG0213 Splicing factor 3b, su 98.6 5.6E-06 1.2E-10 87.3 19.3 370 353-759 707-1142(1172)
78 PRK15370 E3 ubiquitin-protein 98.6 2.4E-07 5.1E-12 104.2 10.2 228 6-326 178-405 (754)
79 KOG1062 Vesicle coat complex A 98.5 9.3E-06 2E-10 87.0 20.8 238 440-705 109-380 (866)
80 PRK15370 E3 ubiquitin-protein 98.5 2.9E-07 6.3E-12 103.5 7.9 136 176-342 263-398 (754)
81 KOG3678 SARM protein (with ste 98.5 1.7E-05 3.7E-10 79.4 19.0 240 474-755 174-448 (832)
82 KOG1059 Vesicle coat complex A 98.5 0.00016 3.5E-09 76.7 26.9 220 398-662 144-366 (877)
83 KOG1242 Protein containing ada 98.4 0.00012 2.7E-09 76.9 25.8 306 361-708 136-448 (569)
84 cd00116 LRR_RI Leucine-rich re 98.4 7.6E-08 1.6E-12 100.0 2.2 253 28-319 19-289 (319)
85 COG5215 KAP95 Karyopherin (imp 98.4 9.1E-05 2E-09 76.3 23.6 358 363-742 180-609 (858)
86 KOG1060 Vesicle coat complex A 98.4 7.6E-05 1.6E-09 79.9 23.4 314 361-706 73-460 (968)
87 KOG1062 Vesicle coat complex A 98.4 0.00012 2.6E-09 78.8 24.5 309 364-706 112-453 (866)
88 KOG1242 Protein containing ada 98.4 0.00012 2.6E-09 77.1 24.1 308 399-756 97-441 (569)
89 COG5181 HSH155 U2 snRNP splice 98.4 6.2E-05 1.3E-09 78.1 21.1 331 361-758 606-946 (975)
90 KOG1824 TATA-binding protein-i 98.4 9.4E-05 2E-09 80.7 23.0 299 447-757 183-597 (1233)
91 TIGR02270 conserved hypothetic 98.3 0.00012 2.7E-09 76.4 23.1 240 361-704 56-296 (410)
92 KOG3207 Beta-tubulin folding c 98.3 8.7E-08 1.9E-12 95.4 -0.3 114 4-129 119-232 (505)
93 KOG0618 Serine/threonine phosp 98.3 2E-07 4.4E-12 101.3 1.6 134 199-348 358-492 (1081)
94 KOG2120 SCF ubiquitin ligase, 98.3 7E-09 1.5E-13 97.6 -9.0 185 33-260 186-373 (419)
95 KOG0213 Splicing factor 3b, su 98.3 0.00026 5.7E-09 75.2 22.9 218 481-705 800-1066(1172)
96 KOG1947 Leucine rich repeat pr 98.2 1.3E-07 2.7E-12 104.8 -1.9 41 282-322 401-441 (482)
97 cd00116 LRR_RI Leucine-rich re 98.2 3.9E-07 8.5E-12 94.6 1.9 272 5-318 22-317 (319)
98 KOG0211 Protein phosphatase 2A 98.2 0.00026 5.6E-09 78.7 23.2 367 359-756 276-661 (759)
99 COG5181 HSH155 U2 snRNP splice 98.2 1.7E-05 3.7E-10 82.1 12.9 259 439-757 605-868 (975)
100 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00015 3.2E-09 75.0 19.8 295 361-661 27-364 (371)
101 KOG1789 Endocytosis protein RM 98.2 0.0021 4.5E-08 71.2 28.6 137 374-512 1740-1885(2235)
102 KOG1061 Vesicle coat complex A 98.2 2.9E-05 6.3E-10 83.4 14.7 178 359-554 13-192 (734)
103 TIGR02270 conserved hypothetic 98.2 0.00043 9.3E-09 72.5 23.0 245 398-761 54-298 (410)
104 KOG2973 Uncharacterized conser 98.2 0.00046 9.9E-09 66.1 20.7 271 441-759 6-315 (353)
105 KOG0212 Uncharacterized conser 98.2 5.1E-05 1.1E-09 78.1 15.4 297 395-707 81-409 (675)
106 PF05536 Neurochondrin: Neuroc 98.2 0.00098 2.1E-08 72.9 26.2 357 360-738 6-459 (543)
107 KOG0617 Ras suppressor protein 98.2 7.2E-08 1.6E-12 83.2 -4.5 82 5-103 32-113 (264)
108 KOG2259 Uncharacterized conser 98.1 7E-05 1.5E-09 78.6 15.6 241 481-756 199-472 (823)
109 KOG2973 Uncharacterized conser 98.1 0.00037 8.1E-09 66.7 18.7 292 401-706 6-317 (353)
110 KOG1060 Vesicle coat complex A 98.1 0.0027 5.9E-08 68.4 26.6 172 361-552 37-210 (968)
111 COG5369 Uncharacterized conser 98.1 7E-05 1.5E-09 76.6 14.1 267 392-660 425-740 (743)
112 PRK15386 type III secretion pr 98.1 1.3E-05 2.9E-10 81.9 9.1 162 30-263 50-213 (426)
113 KOG1517 Guanine nucleotide bin 98.1 0.0001 2.2E-09 81.2 16.2 194 356-552 469-672 (1387)
114 PF14664 RICTOR_N: Rapamycin-i 98.1 0.0011 2.4E-08 68.6 23.0 285 440-758 27-363 (371)
115 COG5240 SEC21 Vesicle coat com 98.1 0.0031 6.6E-08 65.5 25.3 361 346-759 174-555 (898)
116 KOG4413 26S proteasome regulat 98.1 0.00054 1.2E-08 65.9 18.7 233 359-595 128-377 (524)
117 KOG1824 TATA-binding protein-i 98.0 0.0011 2.4E-08 72.7 22.9 329 361-704 522-886 (1233)
118 PRK15386 type III secretion pr 98.0 1.9E-05 4.2E-10 80.8 9.4 58 61-130 48-105 (426)
119 KOG2120 SCF ubiquitin ligase, 98.0 5.7E-07 1.2E-11 85.0 -1.5 182 119-319 185-374 (419)
120 KOG1517 Guanine nucleotide bin 98.0 0.0002 4.4E-09 79.0 16.5 234 416-663 487-734 (1387)
121 PF00514 Arm: Armadillo/beta-c 98.0 1.4E-05 3.1E-10 53.3 4.5 41 621-661 1-41 (41)
122 COG1413 FOG: HEAT repeat [Ener 98.0 0.0033 7.1E-08 65.6 24.5 184 360-593 44-240 (335)
123 KOG0211 Protein phosphatase 2A 97.9 0.0014 3.1E-08 73.0 22.0 362 365-759 243-625 (759)
124 PF12460 MMS19_C: RNAPII trans 97.9 0.026 5.6E-07 60.4 31.3 331 361-706 1-396 (415)
125 KOG4646 Uncharacterized conser 97.9 1.9E-05 4E-10 65.4 5.3 131 440-572 18-149 (173)
126 KOG3207 Beta-tubulin folding c 97.9 4.5E-06 9.8E-11 83.5 1.9 138 89-261 118-257 (505)
127 KOG1943 Beta-tubulin folding c 97.9 0.012 2.6E-07 66.2 27.7 290 360-660 342-704 (1133)
128 COG1413 FOG: HEAT repeat [Ener 97.9 0.004 8.7E-08 64.9 23.4 188 398-661 43-242 (335)
129 COG5096 Vesicle coat complex, 97.9 0.0041 8.8E-08 68.8 23.5 139 361-511 57-196 (757)
130 COG5231 VMA13 Vacuolar H+-ATPa 97.8 0.00064 1.4E-08 65.3 15.0 259 405-704 156-428 (432)
131 KOG1947 Leucine rich repeat pr 97.8 1.4E-06 3E-11 96.5 -3.8 35 287-322 381-415 (482)
132 KOG0618 Serine/threonine phosp 97.8 3.2E-06 6.9E-11 92.4 -1.1 129 175-320 359-488 (1081)
133 KOG1077 Vesicle coat complex A 97.8 0.016 3.6E-07 61.9 25.8 303 364-706 79-400 (938)
134 KOG0212 Uncharacterized conser 97.8 0.0079 1.7E-07 62.6 22.6 232 361-598 169-409 (675)
135 PF00514 Arm: Armadillo/beta-c 97.8 6.6E-05 1.4E-09 50.1 5.1 40 664-703 1-40 (41)
136 KOG4646 Uncharacterized conser 97.7 0.00039 8.4E-09 57.8 10.3 138 605-758 32-169 (173)
137 KOG0617 Ras suppressor protein 97.7 1.9E-06 4.1E-11 74.6 -3.1 130 197-342 53-183 (264)
138 KOG1789 Endocytosis protein RM 97.7 0.002 4.3E-08 71.3 18.3 307 416-741 1742-2141(2235)
139 COG5240 SEC21 Vesicle coat com 97.7 0.00094 2E-08 69.1 15.0 288 361-704 266-555 (898)
140 KOG1240 Protein kinase contain 97.7 0.0016 3.4E-08 73.5 17.4 254 372-661 436-725 (1431)
141 PF05536 Neurochondrin: Neuroc 97.7 0.019 4.1E-07 63.0 25.8 242 439-705 6-262 (543)
142 KOG0472 Leucine-rich repeat pr 97.7 6.7E-07 1.5E-11 88.1 -7.9 110 193-319 199-308 (565)
143 PF14580 LRR_9: Leucine-rich r 97.6 5.8E-05 1.3E-09 68.7 4.7 130 6-163 19-148 (175)
144 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.002 4.3E-08 62.0 14.8 223 524-760 151-429 (432)
145 KOG4535 HEAT and armadillo rep 97.6 0.00019 4.2E-09 72.5 8.5 211 491-704 359-603 (728)
146 PF13646 HEAT_2: HEAT repeats; 97.6 0.00013 2.8E-09 58.9 6.1 87 400-506 1-88 (88)
147 KOG0472 Leucine-rich repeat pr 97.6 1E-06 2.2E-11 86.8 -8.2 126 199-342 182-307 (565)
148 KOG1991 Nuclear transport rece 97.5 0.034 7.3E-07 62.2 24.7 290 398-709 410-716 (1010)
149 PF12348 CLASP_N: CLASP N term 97.5 0.0015 3.2E-08 63.9 13.3 183 369-559 17-214 (228)
150 PF13646 HEAT_2: HEAT repeats; 97.5 0.00043 9.2E-09 55.8 8.0 86 440-547 1-88 (88)
151 KOG1240 Protein kinase contain 97.5 0.0017 3.7E-08 73.2 14.8 292 399-758 423-724 (1431)
152 KOG2734 Uncharacterized conser 97.5 0.031 6.7E-07 56.7 22.0 216 378-598 103-349 (536)
153 PF12348 CLASP_N: CLASP N term 97.5 0.00098 2.1E-08 65.1 11.3 185 532-759 17-206 (228)
154 KOG0567 HEAT repeat-containing 97.4 0.03 6.5E-07 53.0 19.5 245 370-703 16-279 (289)
155 KOG1058 Vesicle coat complex C 97.4 0.014 3.1E-07 62.8 19.4 238 401-672 102-357 (948)
156 KOG1077 Vesicle coat complex A 97.4 0.12 2.6E-06 55.6 25.9 297 361-704 113-433 (938)
157 KOG1058 Vesicle coat complex C 97.4 0.034 7.4E-07 60.1 21.6 93 646-762 373-466 (948)
158 KOG4535 HEAT and armadillo rep 97.4 0.00039 8.4E-09 70.3 6.9 282 374-662 270-604 (728)
159 KOG2259 Uncharacterized conser 97.4 0.0028 6E-08 67.1 13.2 254 364-669 203-482 (823)
160 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00043 9.3E-09 49.8 5.1 54 605-659 2-55 (55)
161 PF13855 LRR_8: Leucine rich r 97.3 0.00043 9.3E-09 51.1 5.1 59 6-75 1-59 (61)
162 KOG0567 HEAT repeat-containing 97.3 0.027 5.8E-07 53.3 17.7 88 634-757 189-278 (289)
163 PF10165 Ric8: Guanine nucleot 97.3 0.036 7.8E-07 59.5 21.2 262 391-662 15-338 (446)
164 KOG1991 Nuclear transport rece 97.3 0.067 1.5E-06 59.9 22.9 305 372-706 431-759 (1010)
165 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00026 5.7E-09 50.9 3.2 55 495-549 1-55 (55)
166 KOG0915 Uncharacterized conser 97.2 0.078 1.7E-06 62.1 23.6 304 361-673 1000-1318(1702)
167 COG5096 Vesicle coat complex, 97.2 0.34 7.3E-06 54.2 27.6 166 368-552 28-196 (757)
168 PF14580 LRR_9: Leucine-rich r 97.2 0.00019 4.1E-09 65.4 2.4 108 4-127 40-148 (175)
169 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0018 4E-08 52.4 7.7 94 607-704 3-96 (97)
170 KOG4237 Extracellular matrix p 97.2 5.1E-05 1.1E-09 75.1 -1.6 111 2-130 62-175 (498)
171 PF13855 LRR_8: Leucine rich r 97.2 0.00071 1.5E-08 49.9 4.9 59 65-129 1-59 (61)
172 KOG1943 Beta-tubulin folding c 97.2 0.018 3.9E-07 64.8 17.4 245 438-703 341-610 (1133)
173 KOG2734 Uncharacterized conser 97.2 0.02 4.3E-07 58.0 16.0 218 355-574 121-371 (536)
174 KOG0915 Uncharacterized conser 97.1 0.08 1.7E-06 62.0 22.3 314 372-708 970-1310(1702)
175 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.01 2.2E-07 48.1 10.7 94 648-758 2-95 (97)
176 KOG2274 Predicted importin 9 [ 97.0 0.058 1.3E-06 59.7 18.7 223 369-596 460-690 (1005)
177 smart00185 ARM Armadillo/beta- 96.9 0.002 4.4E-08 42.9 4.9 39 623-661 3-41 (41)
178 smart00185 ARM Armadillo/beta- 96.9 0.0024 5.2E-08 42.5 5.2 39 471-510 3-41 (41)
179 KOG2982 Uncharacterized conser 96.9 0.00027 5.9E-09 67.4 0.6 63 64-130 70-132 (418)
180 KOG1078 Vesicle coat complex C 96.7 0.04 8.7E-07 60.0 14.9 269 361-660 247-531 (865)
181 KOG1078 Vesicle coat complex C 96.7 0.13 2.7E-06 56.3 18.5 266 403-704 250-532 (865)
182 PF08569 Mo25: Mo25-like; Int 96.7 0.3 6.5E-06 49.8 20.4 197 521-757 75-281 (335)
183 COG5656 SXM1 Importin, protein 96.6 0.84 1.8E-05 49.9 23.5 152 418-575 389-550 (970)
184 PF11841 DUF3361: Domain of un 96.6 0.049 1.1E-06 48.0 12.0 128 519-671 8-141 (160)
185 PF05004 IFRD: Interferon-rela 96.6 0.18 4E-06 51.1 18.1 199 483-707 46-260 (309)
186 KOG2062 26S proteasome regulat 96.6 0.37 8.1E-06 52.4 20.5 114 605-749 570-684 (929)
187 KOG3864 Uncharacterized conser 96.5 0.00035 7.7E-09 63.0 -1.8 72 220-298 121-192 (221)
188 KOG4151 Myosin assembly protei 96.5 0.12 2.7E-06 56.7 16.8 203 471-705 495-700 (748)
189 PF11841 DUF3361: Domain of un 96.5 0.14 3E-06 45.2 14.1 125 472-598 3-134 (160)
190 KOG1248 Uncharacterized conser 96.4 0.46 9.9E-06 54.8 21.1 228 449-707 665-901 (1176)
191 PF05918 API5: Apoptosis inhib 96.4 0.22 4.7E-06 53.8 17.9 305 361-707 25-348 (556)
192 PF04078 Rcd1: Cell differenti 96.4 0.14 3.1E-06 49.0 14.5 205 535-760 8-219 (262)
193 PF09759 Atx10homo_assoc: Spin 96.2 0.026 5.7E-07 45.7 7.7 64 415-478 2-70 (102)
194 KOG4151 Myosin assembly protei 96.2 0.12 2.6E-06 56.8 15.0 240 429-701 495-738 (748)
195 PF09759 Atx10homo_assoc: Spin 96.2 0.017 3.7E-07 46.8 6.6 59 454-512 2-61 (102)
196 PF12460 MMS19_C: RNAPII trans 96.2 0.086 1.9E-06 56.4 14.0 204 361-571 191-413 (415)
197 PF10165 Ric8: Guanine nucleot 96.1 0.48 1E-05 51.0 19.2 107 449-555 43-172 (446)
198 PF12717 Cnd1: non-SMC mitotic 96.1 0.14 3.1E-06 47.4 13.3 91 413-511 2-93 (178)
199 PF12717 Cnd1: non-SMC mitotic 96.1 0.14 2.9E-06 47.5 13.1 91 605-705 3-93 (178)
200 PF11698 V-ATPase_H_C: V-ATPas 96.1 0.015 3.2E-07 48.4 5.9 70 676-758 44-114 (119)
201 KOG2274 Predicted importin 9 [ 96.1 0.64 1.4E-05 52.0 19.5 226 449-706 461-691 (1005)
202 KOG1020 Sister chromatid cohes 96.0 2 4.4E-05 51.0 23.8 142 398-551 816-960 (1692)
203 PF13764 E3_UbLigase_R4: E3 ub 95.9 2.9 6.2E-05 47.9 24.6 223 435-685 114-386 (802)
204 KOG1248 Uncharacterized conser 95.8 0.64 1.4E-05 53.6 18.7 242 403-673 658-910 (1176)
205 PF12719 Cnd3: Nuclear condens 95.8 0.2 4.4E-06 50.9 14.0 171 398-577 26-210 (298)
206 KOG2032 Uncharacterized conser 95.8 0.83 1.8E-05 47.6 17.8 258 436-704 252-531 (533)
207 KOG2025 Chromosome condensatio 95.8 2.3 5E-05 46.5 21.5 105 396-506 83-189 (892)
208 PF05004 IFRD: Interferon-rela 95.7 0.4 8.6E-06 48.7 15.6 188 360-551 44-257 (309)
209 KOG4237 Extracellular matrix p 95.7 0.00088 1.9E-08 66.7 -3.5 65 66-136 68-132 (498)
210 KOG0414 Chromosome condensatio 95.6 0.11 2.5E-06 59.3 12.0 161 399-578 920-1085(1251)
211 PF08569 Mo25: Mo25-like; Int 95.6 0.56 1.2E-05 47.9 16.0 228 475-742 71-313 (335)
212 KOG1967 DNA repair/transcripti 95.6 0.088 1.9E-06 58.5 10.6 138 437-578 866-1009(1030)
213 KOG1909 Ran GTPase-activating 95.5 0.003 6.4E-08 62.1 -0.4 97 4-104 28-132 (382)
214 PF14668 RICTOR_V: Rapamycin-i 95.5 0.1 2.2E-06 39.4 7.9 66 607-675 4-70 (73)
215 KOG1259 Nischarin, modulator o 95.5 0.012 2.5E-07 56.6 3.3 105 199-319 306-410 (490)
216 KOG4653 Uncharacterized conser 95.5 0.26 5.7E-06 54.5 13.7 211 360-578 728-948 (982)
217 PRK14707 hypothetical protein; 95.4 8 0.00017 48.1 26.2 355 360-757 206-569 (2710)
218 KOG1020 Sister chromatid cohes 95.4 8.3 0.00018 46.3 27.3 140 361-509 818-959 (1692)
219 KOG3864 Uncharacterized conser 95.3 0.0021 4.6E-08 58.1 -2.0 68 60-130 120-187 (221)
220 KOG1909 Ran GTPase-activating 95.3 0.0033 7.1E-08 61.8 -1.0 200 29-262 89-310 (382)
221 KOG1259 Nischarin, modulator o 95.2 0.0095 2.1E-07 57.2 1.8 127 197-342 281-409 (490)
222 KOG3036 Protein involved in ce 95.2 1.9 4.1E-05 40.7 16.4 143 539-705 96-248 (293)
223 PLN03150 hypothetical protein; 95.1 0.033 7.2E-07 62.9 6.1 82 202-293 420-501 (623)
224 KOG4653 Uncharacterized conser 95.0 0.44 9.5E-06 52.9 13.6 221 446-704 735-964 (982)
225 KOG2982 Uncharacterized conser 95.0 0.016 3.6E-07 55.7 2.7 38 224-261 173-210 (418)
226 PF12719 Cnd3: Nuclear condens 95.0 0.51 1.1E-05 48.0 13.8 163 361-532 28-207 (298)
227 PF02985 HEAT: HEAT repeat; I 95.0 0.032 7E-07 34.3 3.1 28 440-467 2-29 (31)
228 KOG2956 CLIP-associating prote 95.0 0.51 1.1E-05 48.7 13.2 181 361-550 288-476 (516)
229 PRK14707 hypothetical protein; 94.9 13 0.00029 46.3 26.1 342 361-746 165-516 (2710)
230 PF11698 V-ATPase_H_C: V-ATPas 94.9 0.032 7E-07 46.4 3.8 71 633-704 44-115 (119)
231 KOG2062 26S proteasome regulat 94.7 2.2 4.7E-05 46.8 17.6 133 438-594 519-652 (929)
232 KOG3036 Protein involved in ce 94.6 1.3 2.9E-05 41.7 13.7 140 607-756 95-244 (293)
233 KOG0414 Chromosome condensatio 94.6 0.37 7.9E-06 55.4 12.1 144 521-706 918-1066(1251)
234 PF02985 HEAT: HEAT repeat; I 94.4 0.067 1.4E-06 32.8 3.6 30 523-552 1-30 (31)
235 KOG1967 DNA repair/transcripti 94.4 0.24 5.2E-06 55.2 9.8 191 441-660 818-1023(1030)
236 PF05918 API5: Apoptosis inhib 94.3 0.91 2E-05 49.2 13.9 126 534-704 34-162 (556)
237 PF14500 MMS19_N: Dos2-interac 94.2 3.8 8.2E-05 40.5 17.1 232 402-666 3-242 (262)
238 KOG1820 Microtubule-associated 94.1 1.5 3.2E-05 50.1 15.8 183 362-552 256-444 (815)
239 KOG2137 Protein kinase [Signal 94.1 0.39 8.4E-06 52.5 10.7 173 396-578 347-522 (700)
240 PF12799 LRR_4: Leucine Rich r 94.1 0.079 1.7E-06 35.7 3.6 39 6-48 1-39 (44)
241 COG5098 Chromosome condensatio 94.0 0.67 1.5E-05 50.1 11.9 142 400-554 894-1040(1128)
242 PF08045 CDC14: Cell division 93.9 1.4 3E-05 42.8 12.9 101 648-762 107-210 (257)
243 PLN03150 hypothetical protein; 93.8 0.08 1.7E-06 59.9 5.4 88 178-268 421-508 (623)
244 PF04078 Rcd1: Cell differenti 93.8 2.3 5E-05 41.0 14.0 136 376-512 67-220 (262)
245 PF12799 LRR_4: Leucine Rich r 93.7 0.1 2.2E-06 35.2 3.6 34 225-261 2-35 (44)
246 KOG2025 Chromosome condensatio 93.7 11 0.00025 41.4 20.2 103 480-590 85-188 (892)
247 COG5116 RPN2 26S proteasome re 93.5 1.3 2.7E-05 46.9 12.5 129 442-594 520-649 (926)
248 PF06025 DUF913: Domain of Unk 93.3 6.5 0.00014 41.2 17.8 142 434-575 101-258 (379)
249 PF13251 DUF4042: Domain of un 93.2 2.6 5.7E-05 38.7 13.0 139 415-553 2-176 (182)
250 PF14668 RICTOR_V: Rapamycin-i 93.1 0.52 1.1E-05 35.6 6.9 55 649-705 4-59 (73)
251 PF11864 DUF3384: Domain of un 93.1 16 0.00034 39.9 26.3 57 605-661 271-330 (464)
252 KOG2999 Regulator of Rac1, req 93.1 5.5 0.00012 42.3 16.3 155 440-598 85-245 (713)
253 PF01603 B56: Protein phosphat 93.0 1.8 4E-05 46.0 13.6 235 394-668 129-376 (409)
254 KOG2739 Leucine-rich acidic nu 92.9 0.034 7.3E-07 52.9 0.4 113 199-321 42-156 (260)
255 KOG1949 Uncharacterized conser 92.9 7.8 0.00017 42.5 17.5 182 400-594 176-369 (1005)
256 KOG1243 Protein kinase [Genera 92.8 4.5 9.8E-05 44.4 16.0 257 405-708 261-519 (690)
257 PF06025 DUF913: Domain of Unk 92.8 3.5 7.5E-05 43.2 15.0 196 457-687 3-208 (379)
258 KOG1243 Protein kinase [Genera 92.8 0.82 1.8E-05 49.9 10.5 186 395-594 327-514 (690)
259 KOG1859 Leucine-rich repeat pr 92.7 0.0055 1.2E-07 66.1 -5.7 59 200-261 232-290 (1096)
260 PF11707 Npa1: Ribosome 60S bi 92.6 14 0.00031 38.1 21.1 160 566-759 58-237 (330)
261 KOG2956 CLIP-associating prote 92.5 6.3 0.00014 41.1 15.7 180 492-707 298-480 (516)
262 PF11701 UNC45-central: Myosin 92.4 1.3 2.8E-05 40.0 9.9 136 533-701 16-156 (157)
263 KOG2611 Neurochondrin/leucine- 92.2 5.2 0.00011 41.7 14.6 129 403-535 16-165 (698)
264 KOG0413 Uncharacterized conser 92.0 27 0.00059 40.1 23.8 90 605-705 946-1036(1529)
265 KOG1993 Nuclear transport rece 91.9 25 0.00054 39.5 21.8 281 393-705 483-770 (978)
266 KOG1644 U2-associated snRNP A' 91.9 0.21 4.6E-06 45.6 4.0 106 7-129 43-150 (233)
267 KOG1992 Nuclear export recepto 91.8 27 0.00058 39.4 25.5 135 361-508 7-153 (960)
268 cd03572 ENTH_epsin_related ENT 91.8 3.1 6.7E-05 35.2 10.6 89 655-761 24-121 (122)
269 KOG2999 Regulator of Rac1, req 91.6 3.8 8.2E-05 43.5 13.0 165 482-672 85-253 (713)
270 KOG2032 Uncharacterized conser 91.5 3.2 6.9E-05 43.5 12.3 171 498-694 234-406 (533)
271 COG4886 Leucine-rich repeat (L 91.3 0.27 5.9E-06 52.6 5.1 41 218-262 249-289 (394)
272 KOG1566 Conserved protein Mo25 91.3 17 0.00036 36.1 17.3 207 433-662 74-287 (342)
273 PF13764 E3_UbLigase_R4: E3 ub 91.2 32 0.00069 39.8 21.1 183 395-578 114-333 (802)
274 PF14500 MMS19_N: Dos2-interac 91.2 17 0.00036 36.0 18.7 222 442-706 3-239 (262)
275 PF08045 CDC14: Cell division 91.0 2 4.4E-05 41.6 10.0 101 607-708 108-211 (257)
276 KOG2123 Uncharacterized conser 90.9 0.019 4.2E-07 54.7 -3.5 83 223-322 18-102 (388)
277 KOG1993 Nuclear transport rece 90.7 33 0.00071 38.6 24.0 298 374-704 502-812 (978)
278 COG5098 Chromosome condensatio 90.7 2.6 5.5E-05 45.9 11.1 142 523-706 893-1039(1128)
279 KOG1832 HIV-1 Vpr-binding prot 90.5 4.2 9.1E-05 45.6 12.7 294 371-670 365-780 (1516)
280 KOG1566 Conserved protein Mo25 90.4 20 0.00043 35.6 18.1 217 474-729 73-301 (342)
281 COG5116 RPN2 26S proteasome re 90.4 1.3 2.9E-05 46.8 8.7 127 397-538 550-678 (926)
282 PF11701 UNC45-central: Myosin 90.4 0.65 1.4E-05 41.8 5.8 147 400-548 5-156 (157)
283 COG4886 Leucine-rich repeat (L 90.2 0.69 1.5E-05 49.5 7.0 87 199-299 208-294 (394)
284 KOG2123 Uncharacterized conser 90.1 0.023 4.9E-07 54.2 -3.9 13 154-166 18-30 (388)
285 KOG2739 Leucine-rich acidic nu 89.7 0.12 2.7E-06 49.2 0.7 115 29-166 40-154 (260)
286 COG5656 SXM1 Importin, protein 89.6 36 0.00079 38.0 18.6 81 388-469 450-530 (970)
287 PF14225 MOR2-PAG1_C: Cell mor 89.6 14 0.0003 36.5 14.6 206 365-594 13-253 (262)
288 PF01347 Vitellogenin_N: Lipop 89.1 2.7 5.9E-05 48.0 11.1 156 399-578 396-572 (618)
289 PF11865 DUF3385: Domain of un 89.1 2.3 5E-05 38.4 8.3 145 398-550 10-156 (160)
290 PLN03076 ARF guanine nucleotid 89.1 28 0.0006 44.2 19.8 144 443-594 1142-1298(1780)
291 KOG0413 Uncharacterized conser 89.0 24 0.00052 40.5 17.1 143 373-530 945-1091(1529)
292 PF13504 LRR_7: Leucine rich r 89.0 0.3 6.5E-06 25.1 1.5 15 309-324 2-16 (17)
293 KOG1949 Uncharacterized conser 88.6 36 0.00077 37.7 17.6 147 440-593 176-329 (1005)
294 PF12530 DUF3730: Protein of u 88.5 25 0.00055 34.1 16.7 140 400-552 2-152 (234)
295 PF01603 B56: Protein phosphat 88.1 12 0.00026 39.9 14.3 231 434-706 129-372 (409)
296 KOG2933 Uncharacterized conser 87.9 6.3 0.00014 38.9 10.6 138 360-509 89-233 (334)
297 KOG2137 Protein kinase [Signal 87.7 11 0.00025 41.7 13.6 140 388-535 379-521 (700)
298 KOG1820 Microtubule-associated 87.7 4.9 0.00011 46.1 11.4 199 439-670 254-452 (815)
299 PF04063 DUF383: Domain of unk 87.5 2.6 5.5E-05 39.3 7.7 129 449-577 6-160 (192)
300 cd03568 VHS_STAM VHS domain fa 87.5 3 6.6E-05 36.8 7.8 75 633-707 38-113 (144)
301 cd03567 VHS_GGA VHS domain fam 87.3 3 6.6E-05 36.4 7.6 93 633-732 39-137 (139)
302 KOG0532 Leucine-rich repeat (L 87.1 0.095 2.1E-06 55.4 -2.1 35 198-233 164-198 (722)
303 KOG2933 Uncharacterized conser 86.7 3.8 8.3E-05 40.3 8.5 144 521-703 87-233 (334)
304 PF06371 Drf_GBD: Diaphanous G 86.5 2.2 4.8E-05 39.9 7.0 106 400-509 68-186 (187)
305 PF10363 DUF2435: Protein of u 86.5 3.8 8.2E-05 32.9 7.1 71 483-555 6-76 (92)
306 KOG1644 U2-associated snRNP A' 86.4 1.5 3.3E-05 40.3 5.3 108 31-166 41-151 (233)
307 PLN03076 ARF guanine nucleotid 86.4 71 0.0015 40.8 21.0 135 409-549 1148-1297(1780)
308 KOG1848 Uncharacterized conser 86.3 15 0.00032 43.9 14.2 98 450-552 854-959 (1610)
309 cd03569 VHS_Hrs_Vps27p VHS dom 86.3 4.1 8.9E-05 35.9 8.0 74 633-706 42-116 (142)
310 KOG1822 Uncharacterized conser 86.3 62 0.0013 40.5 19.4 230 360-594 826-1087(2067)
311 KOG2611 Neurochondrin/leucine- 86.0 40 0.00087 35.5 15.6 183 364-550 16-224 (698)
312 PF06371 Drf_GBD: Diaphanous G 85.7 4.9 0.00011 37.5 8.9 103 362-466 69-186 (187)
313 COG5218 YCG1 Chromosome conden 85.7 21 0.00046 38.4 13.8 98 361-466 93-195 (885)
314 cd03568 VHS_STAM VHS domain fa 85.5 5.2 0.00011 35.3 8.2 70 676-757 38-108 (144)
315 PF13251 DUF4042: Domain of un 85.2 14 0.00031 34.0 11.1 110 399-512 40-176 (182)
316 PF08506 Cse1: Cse1; InterPro 84.5 20 0.00043 37.5 13.3 69 625-699 302-370 (370)
317 PF12031 DUF3518: Domain of un 84.3 2.7 5.8E-05 39.8 6.0 77 413-489 138-225 (257)
318 smart00638 LPD_N Lipoprotein N 84.1 18 0.0004 40.8 14.1 121 439-578 394-528 (574)
319 PF06685 DUF1186: Protein of u 83.8 32 0.0007 33.5 13.4 98 436-537 71-169 (249)
320 smart00367 LRR_CC Leucine-rich 83.8 0.69 1.5E-05 26.9 1.3 16 307-322 1-16 (26)
321 PF12231 Rif1_N: Rap1-interact 83.2 65 0.0014 33.9 22.2 273 413-705 7-304 (372)
322 cd03561 VHS VHS domain family; 83.1 13 0.00028 32.4 9.6 70 676-757 38-110 (133)
323 cd03569 VHS_Hrs_Vps27p VHS dom 83.0 8.3 0.00018 34.0 8.4 71 676-758 42-113 (142)
324 PF10363 DUF2435: Protein of u 82.9 7.1 0.00015 31.3 7.2 70 634-706 5-74 (92)
325 PF08167 RIX1: rRNA processing 82.9 21 0.00045 32.5 11.3 114 398-515 25-148 (165)
326 PF04063 DUF383: Domain of unk 82.4 9.7 0.00021 35.5 9.0 100 414-515 10-137 (192)
327 cd03567 VHS_GGA VHS domain fam 81.9 9.8 0.00021 33.3 8.3 70 676-757 39-114 (139)
328 KOG0531 Protein phosphatase 1, 81.8 0.64 1.4E-05 49.9 1.2 37 62-103 115-151 (414)
329 KOG1525 Sister chromatid cohes 81.5 96 0.0021 38.0 18.6 130 605-759 274-405 (1266)
330 PF12830 Nipped-B_C: Sister ch 81.3 20 0.00044 33.4 10.9 69 399-473 9-80 (187)
331 COG5218 YCG1 Chromosome conden 80.1 12 0.00027 40.2 9.6 107 397-512 90-198 (885)
332 KOG1859 Leucine-rich repeat pr 80.1 0.21 4.6E-06 54.5 -3.0 107 30-167 185-291 (1096)
333 COG5209 RCD1 Uncharacterized p 79.9 7.6 0.00016 36.2 7.1 91 616-706 125-220 (315)
334 KOG1992 Nuclear export recepto 78.9 1.3E+02 0.0027 34.5 26.5 292 364-662 42-392 (960)
335 PF11864 DUF3384: Domain of un 78.7 1.1E+02 0.0023 33.5 22.5 73 521-595 249-330 (464)
336 KOG4464 Signaling protein RIC- 78.6 87 0.0019 32.5 15.9 41 450-490 109-149 (532)
337 PF00560 LRR_1: Leucine Rich R 78.6 1.3 2.8E-05 24.5 1.2 15 7-22 1-15 (22)
338 PF08324 PUL: PUL domain; Int 78.4 12 0.00025 37.5 8.9 131 370-501 121-265 (268)
339 PF08506 Cse1: Cse1; InterPro 78.1 31 0.00067 36.1 12.1 146 395-546 207-370 (370)
340 PF12031 DUF3518: Domain of un 77.7 5.3 0.00011 37.9 5.6 81 373-453 138-231 (257)
341 smart00288 VHS Domain present 77.2 25 0.00054 30.6 9.4 71 676-758 38-110 (133)
342 PF07814 WAPL: Wings apart-lik 77.1 74 0.0016 33.3 14.6 92 440-532 23-116 (361)
343 PF11865 DUF3385: Domain of un 76.8 9.3 0.0002 34.5 6.9 142 439-592 11-154 (160)
344 smart00288 VHS Domain present 76.7 13 0.00028 32.3 7.6 74 633-706 38-113 (133)
345 KOG1832 HIV-1 Vpr-binding prot 75.6 58 0.0013 37.2 13.3 135 625-761 594-775 (1516)
346 PF12074 DUF3554: Domain of un 75.6 48 0.001 34.4 12.9 93 395-490 19-113 (339)
347 PF13306 LRR_5: Leucine rich r 75.1 18 0.00038 31.0 8.2 79 5-100 11-89 (129)
348 COG5209 RCD1 Uncharacterized p 74.5 16 0.00034 34.2 7.5 98 605-704 161-268 (315)
349 PF08167 RIX1: rRNA processing 74.5 28 0.0006 31.7 9.4 109 361-470 27-146 (165)
350 PF10521 DUF2454: Protein of u 74.2 23 0.00049 35.6 9.6 121 633-758 120-252 (282)
351 KOG1822 Uncharacterized conser 74.1 2.6E+02 0.0055 35.6 20.7 132 440-575 878-1011(2067)
352 PF12830 Nipped-B_C: Sister ch 74.0 76 0.0017 29.5 12.9 139 361-512 10-169 (187)
353 cd03572 ENTH_epsin_related ENT 73.2 26 0.00055 29.8 8.1 86 614-704 25-119 (122)
354 PF01347 Vitellogenin_N: Lipop 72.4 1.8E+02 0.0039 33.2 19.2 202 439-699 396-617 (618)
355 PF07814 WAPL: Wings apart-lik 72.2 1.3E+02 0.0029 31.5 18.1 92 399-490 22-116 (361)
356 KOG0532 Leucine-rich repeat (L 72.1 0.85 1.8E-05 48.6 -1.1 103 200-319 143-245 (722)
357 PF13001 Ecm29: Proteasome sta 70.3 83 0.0018 34.7 13.6 126 625-763 363-492 (501)
358 PF00790 VHS: VHS domain; Int 70.1 28 0.00061 30.6 8.2 70 676-757 43-116 (140)
359 PF04388 Hamartin: Hamartin pr 69.5 86 0.0019 35.9 13.7 157 360-531 5-161 (668)
360 PF14726 RTTN_N: Rotatin, an a 67.7 52 0.0011 26.8 8.3 69 674-756 29-97 (98)
361 KOG0891 DNA-dependent protein 67.7 53 0.0012 42.8 12.5 249 367-621 489-765 (2341)
362 KOG1410 Nuclear transport rece 67.4 2.1E+02 0.0046 31.9 18.2 143 360-511 6-158 (1082)
363 PF10521 DUF2454: Protein of u 67.1 75 0.0016 31.9 11.6 138 439-578 120-279 (282)
364 KOG4464 Signaling protein RIC- 67.1 1.7E+02 0.0036 30.6 13.9 93 482-574 47-149 (532)
365 cd03561 VHS VHS domain family; 66.7 31 0.00068 30.0 7.7 75 633-707 38-115 (133)
366 PF12530 DUF3730: Protein of u 66.6 1.3E+02 0.0028 29.2 18.1 200 361-578 2-217 (234)
367 COG5101 CRM1 Importin beta-rel 66.6 2.1E+02 0.0046 31.6 19.4 118 606-726 499-620 (1053)
368 PF12726 SEN1_N: SEN1 N termin 66.6 2.6E+02 0.0057 32.7 24.4 113 634-761 443-555 (727)
369 PF00790 VHS: VHS domain; Int 66.5 9.7 0.00021 33.5 4.5 74 633-706 43-120 (140)
370 KOG2005 26S proteasome regulat 65.5 81 0.0018 34.9 11.5 276 399-703 416-703 (878)
371 cd00197 VHS_ENTH_ANTH VHS, ENT 65.0 47 0.001 27.9 8.3 71 676-758 38-114 (115)
372 cd03565 VHS_Tom1 VHS domain fa 64.0 54 0.0012 28.8 8.6 73 634-706 40-117 (141)
373 KOG0392 SNF2 family DNA-depend 63.0 27 0.00058 41.5 8.0 235 355-597 73-327 (1549)
374 PF10274 ParcG: Parkin co-regu 62.6 1.3E+02 0.0028 27.8 11.5 75 632-707 38-112 (183)
375 KOG0392 SNF2 family DNA-depend 62.3 1.6E+02 0.0035 35.5 13.7 235 481-762 78-328 (1549)
376 PF11707 Npa1: Ribosome 60S bi 62.1 2E+02 0.0043 29.7 22.4 169 524-705 58-238 (330)
377 KOG0889 Histone acetyltransfer 61.4 2.3E+02 0.0049 38.5 16.0 282 399-685 985-1328(3550)
378 PF12231 Rif1_N: Rap1-interact 60.8 2.2E+02 0.0049 29.9 21.0 224 494-757 59-301 (372)
379 KOG0531 Protein phosphatase 1, 60.5 5.9 0.00013 42.6 2.4 61 61-130 91-151 (414)
380 KOG1788 Uncharacterized conser 59.5 1.5E+02 0.0032 34.9 12.5 132 439-575 467-600 (2799)
381 PF13306 LRR_5: Leucine rich r 59.1 35 0.00077 29.1 6.8 100 199-316 11-111 (129)
382 KOG1525 Sister chromatid cohes 58.9 3.3E+02 0.0072 33.7 16.2 151 519-705 256-406 (1266)
383 PF04821 TIMELESS: Timeless pr 58.3 2E+02 0.0043 28.6 13.7 126 360-512 14-151 (266)
384 PF12054 DUF3535: Domain of un 58.3 92 0.002 33.6 10.9 78 452-534 101-180 (441)
385 smart00638 LPD_N Lipoprotein N 57.9 3.2E+02 0.007 30.8 20.8 136 481-659 394-543 (574)
386 PF08389 Xpo1: Exportin 1-like 57.8 34 0.00073 30.2 6.6 141 413-589 2-147 (148)
387 PF04499 SAPS: SIT4 phosphatas 57.4 1.3E+02 0.0029 32.7 11.9 76 665-740 52-128 (475)
388 PF08711 Med26: TFIIS helical 55.4 34 0.00073 24.0 4.8 35 723-757 13-48 (53)
389 PF08713 DNA_alkylation: DNA a 53.5 2E+02 0.0044 27.2 12.2 141 401-563 54-196 (213)
390 PF08324 PUL: PUL domain; Int 52.8 83 0.0018 31.3 9.1 108 450-558 122-238 (268)
391 cd03565 VHS_Tom1 VHS domain fa 52.8 93 0.002 27.4 8.2 71 676-758 39-114 (141)
392 PF09324 DUF1981: Domain of un 52.1 23 0.00049 28.0 3.8 67 477-547 14-84 (86)
393 PF12074 DUF3554: Domain of un 51.9 2.9E+02 0.0063 28.6 15.5 108 455-574 4-113 (339)
394 PF14726 RTTN_N: Rotatin, an a 50.2 92 0.002 25.3 7.0 67 631-699 29-95 (98)
395 KOG0301 Phospholipase A2-activ 50.0 2.7E+02 0.0059 31.1 12.3 144 365-513 550-707 (745)
396 KOG1988 Uncharacterized conser 46.4 4.3E+02 0.0093 30.7 13.4 212 362-593 27-241 (970)
397 PF12726 SEN1_N: SEN1 N termin 46.1 1.5E+02 0.0032 34.7 10.8 143 399-552 442-586 (727)
398 PF01417 ENTH: ENTH domain; I 45.8 1.3E+02 0.0028 25.7 8.0 98 645-761 16-123 (125)
399 KOG2011 Sister chromatid cohes 45.1 3.6E+02 0.0079 32.3 13.2 129 605-755 302-431 (1048)
400 PF12783 Sec7_N: Guanine nucle 44.7 2.2E+02 0.0049 25.7 9.9 87 391-478 66-157 (168)
401 PF10274 ParcG: Parkin co-regu 44.3 2.1E+02 0.0045 26.5 9.1 74 438-512 38-111 (183)
402 KOG2073 SAP family cell cycle 44.0 5.4E+02 0.012 30.3 14.3 89 646-736 336-426 (838)
403 PF14225 MOR2-PAG1_C: Cell mor 43.8 3.4E+02 0.0073 26.9 14.5 169 361-546 66-252 (262)
404 PF09324 DUF1981: Domain of un 42.7 1.4E+02 0.003 23.6 6.9 68 672-756 14-85 (86)
405 KOG2085 Serine/threonine prote 42.7 4.3E+02 0.0092 27.8 12.9 77 392-470 171-251 (457)
406 PF13001 Ecm29: Proteasome sta 42.5 2.8E+02 0.0061 30.6 11.8 136 371-512 295-445 (501)
407 cd08050 TAF6 TATA Binding Prot 41.6 1.8E+02 0.004 30.1 9.6 112 481-593 211-338 (343)
408 smart00509 TFS2N Domain in the 39.9 1.2E+02 0.0026 23.2 6.0 36 722-757 34-69 (75)
409 PF06685 DUF1186: Protein of u 39.6 3.8E+02 0.0081 26.3 13.8 82 478-572 71-161 (249)
410 KOG0891 DNA-dependent protein 39.6 5.6E+02 0.012 34.2 14.8 103 403-513 486-597 (2341)
411 KOG2199 Signal transducing ada 39.3 1.4E+02 0.003 30.9 7.7 72 633-704 46-118 (462)
412 KOG2005 26S proteasome regulat 39.0 6.1E+02 0.013 28.6 16.1 73 398-471 48-129 (878)
413 KOG1924 RhoA GTPase effector D 38.9 2.4E+02 0.0052 32.1 10.0 115 634-756 236-361 (1102)
414 PF04821 TIMELESS: Timeless pr 37.5 4.2E+02 0.0092 26.3 11.2 172 521-706 12-210 (266)
415 PF13516 LRR_6: Leucine Rich r 37.3 23 0.00049 19.8 1.3 13 307-319 1-13 (24)
416 KOG2213 Apoptosis inhibitor 5/ 36.8 5.1E+02 0.011 27.0 16.5 131 450-594 36-179 (460)
417 smart00369 LRR_TYP Leucine-ric 36.2 24 0.00053 20.2 1.3 20 307-327 1-20 (26)
418 smart00370 LRR Leucine-rich re 36.2 24 0.00053 20.2 1.3 20 307-327 1-20 (26)
419 cd00197 VHS_ENTH_ANTH VHS, ENT 36.1 1.5E+02 0.0033 24.8 6.8 70 633-702 38-113 (115)
420 PF04499 SAPS: SIT4 phosphatas 35.9 1.9E+02 0.004 31.6 8.9 79 434-512 58-150 (475)
421 PF03130 HEAT_PBS: PBS lyase H 34.9 55 0.0012 19.1 2.7 26 497-532 1-26 (27)
422 PF08216 CTNNBL: Catenin-beta- 34.9 80 0.0017 26.1 4.5 43 540-585 64-106 (108)
423 KOG1087 Cytosolic sorting prot 34.6 1.4E+02 0.0031 32.1 7.6 72 676-759 39-112 (470)
424 KOG2038 CAATT-binding transcri 34.2 7.8E+02 0.017 28.4 24.1 104 439-550 305-408 (988)
425 PF11791 Aconitase_B_N: Aconit 34.1 61 0.0013 28.5 3.9 99 361-468 24-124 (154)
426 KOG4579 Leucine-rich repeat (L 33.8 6.1 0.00013 34.1 -2.0 57 224-291 53-109 (177)
427 cd00183 TFIIS_I N-terminal dom 33.2 1.8E+02 0.004 22.2 6.1 35 723-757 37-71 (76)
428 KOG2011 Sister chromatid cohes 32.8 5.4E+02 0.012 30.9 12.2 140 404-549 293-433 (1048)
429 PF12765 Cohesin_HEAT: HEAT re 32.4 45 0.00097 22.1 2.3 27 728-754 16-42 (42)
430 KOG2213 Apoptosis inhibitor 5/ 32.1 6.1E+02 0.013 26.5 12.7 223 361-592 63-311 (460)
431 PF03378 CAS_CSE1: CAS/CSE pro 32.0 4.5E+02 0.0098 28.3 11.0 114 482-598 28-149 (435)
432 KOG2549 Transcription initiati 30.4 7.7E+02 0.017 27.1 12.3 140 443-593 212-368 (576)
433 PF12463 DUF3689: Protein of u 30.4 5.2E+02 0.011 26.2 10.3 82 478-559 93-181 (303)
434 KOG2073 SAP family cell cycle 30.3 9.7E+02 0.021 28.3 17.1 58 432-489 184-248 (838)
435 KOG2199 Signal transducing ada 30.3 2.1E+02 0.0045 29.6 7.4 71 676-758 46-117 (462)
436 PF11791 Aconitase_B_N: Aconit 29.7 2.6E+02 0.0057 24.7 7.0 46 607-663 80-125 (154)
437 PF08216 CTNNBL: Catenin-beta- 29.5 49 0.0011 27.3 2.5 39 418-456 65-105 (108)
438 PF14228 MOR2-PAG1_mid: Cell m 29.4 1.2E+03 0.025 28.9 14.8 66 399-467 197-275 (1120)
439 PF12054 DUF3535: Domain of un 26.2 5.7E+02 0.012 27.7 10.6 73 373-450 101-180 (441)
440 KOG2149 Uncharacterized conser 25.6 7E+02 0.015 26.2 10.3 114 439-554 59-173 (393)
441 smart00567 EZ_HEAT E-Z type HE 25.1 1.2E+02 0.0025 18.0 3.1 28 496-533 2-29 (30)
442 KOG1848 Uncharacterized conser 24.6 8.5E+02 0.018 30.3 11.9 242 413-661 856-1132(1610)
443 COG5537 IRR1 Cohesin [Cell div 24.6 8.8E+02 0.019 27.1 11.1 108 401-511 278-387 (740)
444 PF12397 U3snoRNP10: U3 small 24.3 4.3E+02 0.0094 22.2 9.5 93 633-738 7-103 (121)
445 KOG1851 Uncharacterized conser 23.7 1.6E+03 0.034 28.6 16.8 100 645-761 1500-1600(1710)
446 KOG4524 Uncharacterized conser 22.4 2.6E+02 0.0056 32.8 7.2 103 470-575 795-900 (1014)
447 PF10257 RAI16-like: Retinoic 21.7 9.3E+02 0.02 25.1 12.1 166 392-573 3-181 (353)
448 KOG1924 RhoA GTPase effector D 21.7 1.3E+03 0.028 26.8 13.8 135 536-686 206-347 (1102)
449 smart00802 UME Domain in UVSB 21.4 3.3E+02 0.007 22.6 5.9 68 398-467 11-83 (107)
450 KOG2149 Uncharacterized conser 21.2 9.8E+02 0.021 25.2 12.0 114 565-706 59-172 (393)
451 PF04388 Hamartin: Hamartin pr 20.6 1.2E+03 0.026 26.9 12.3 58 605-662 83-141 (668)
452 KOG2038 CAATT-binding transcri 20.4 1.4E+03 0.03 26.6 17.3 78 520-604 302-379 (988)
453 PF12783 Sec7_N: Guanine nucle 20.3 6.4E+02 0.014 22.7 10.3 100 647-760 37-147 (168)
454 KOG1087 Cytosolic sorting prot 20.2 4.3E+02 0.0094 28.7 8.0 73 633-705 39-113 (470)
455 TIGR03504 FimV_Cterm FimV C-te 20.0 1.8E+02 0.0039 19.5 3.4 30 728-757 15-44 (44)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.9e-55 Score=405.39 Aligned_cols=399 Identities=52% Similarity=0.717 Sum_probs=373.5
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhH
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTN 432 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~ 432 (767)
.+|.+...+.|+|.+.+.+|...++++. +++.+.++..|++|.++++++.......+.+|+|+|.|+++ ...+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 6899999999999999999999999988 78899999999999999999655436889999999999999 6677
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccC-CChHHHHHHHHHHHhhcCC
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKH-AKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~~~~~L~~l~~~ 511 (767)
.+++.|++|.++++|.+++.++++++.|+|+|++.+++.+|+.+++.|++++++.++.++ .+..+.+++.|+|+|+|++
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 788999999999999999999999999999999999999999999999999999999533 3468999999999999999
Q ss_pred C-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHH
Q 004225 512 K-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 512 ~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L 590 (767)
. |.+....+..++|.|.+++.+.|+++..+|+|++++++++..+.++.+++.|+.+.|+++|.+++. .++.+|++.+
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa--~iqtPalR~v 309 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA--KIQTPALRSV 309 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccc--cccCHHHHhh
Confidence 8 888999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhhhccCCcceeeh------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHH
Q 004225 591 RYIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEA 652 (767)
Q Consensus 591 ~~l~~~~~~~~~~l------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 652 (767)
+|+..+++.+++.+ .++++|||+++||++++.++++++++++++|+|+.+|...+..+|++|
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA 389 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 99999999999887 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhc
Q 004225 653 ARAISNAISGG--THEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAE 730 (767)
Q Consensus 653 ~~~L~nl~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g 730 (767)
|||+.|...++ -|+.++++++.|++++|+++|.-.+..+.+.++.++.++.+.++...... |-.++.|+.+++++|
T Consensus 390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~--~~nin~ya~~vE~Ag 467 (526)
T COG5064 390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRY--GKNINIYAVYVEKAG 467 (526)
T ss_pred HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhc--cCCccHHHHHHHhcc
Confidence 99999999876 58899999999999999999999998999999999999999877665443 226788999999999
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Q 004225 731 GFKKIEDLKRHDSNGICEKAVKILEIYWSCGV 762 (767)
Q Consensus 731 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 762 (767)
+++.++.++++.|..++.+|..++++||..|+
T Consensus 468 gmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD 499 (526)
T COG5064 468 GMDAIHGLQDSVNRTIYDKAYSIIEKFFGEED 499 (526)
T ss_pred cHHHHHHhhhccccHHHHHHHHHHHHHcccch
Confidence 99999999999999999999999999998764
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-54 Score=435.91 Aligned_cols=395 Identities=62% Similarity=0.865 Sum_probs=375.4
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhH
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTN 432 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~ 432 (767)
..+.+++.+.|+++..+..+...++++. +++...++..|+++.+++.+...+.+.++.+|+|+|+|+++ +..+
T Consensus 67 ~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 67 NLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 3788899999999999999999999998 67788899889999999999877669999999999999999 8888
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
.+++.|++|.|++++.+++.+++++|+|+|+|++.+++.+|+.+++.|++++|+.++..+....+.++++|+|+|+|++.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999954444589999999999999998
Q ss_pred -CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHh
Q 004225 513 -PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVR 591 (767)
Q Consensus 513 -~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~ 591 (767)
|.+.+.....++|.|..++.+.|+++..+|+|++++++++.++.++.+++.|++|.++++|.+.+. .++.+|+++++
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiG 304 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIG 304 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhcc
Confidence 888889999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhccCCcceeeh-------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHH
Q 004225 592 YIVKGDGFLTQCT-------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEA 652 (767)
Q Consensus 592 ~l~~~~~~~~~~l-------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 652 (767)
|++.+++.+++.+ .++++|||+++||++|+.+++++++++|++|.|+.+|+..++++|++|
T Consensus 305 NIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEA 384 (514)
T KOG0166|consen 305 NIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEA 384 (514)
T ss_pred ceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHH
Confidence 9999999999887 488999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchH
Q 004225 653 ARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGF 732 (767)
Q Consensus 653 ~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 732 (767)
+||++|++.+++++++.+|++.|++++++++|...|.++...++.+|+++.+.++.....+ . +.+..+++++|++
T Consensus 385 awaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggl 459 (514)
T KOG0166|consen 385 AWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGL 459 (514)
T ss_pred HHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccCh
Confidence 9999999999999999999999999999999999999999999999999999988776432 1 7899999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 004225 733 KKIEDLKRHDSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 733 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 761 (767)
++++.+++|++.+++++|..++++||..|
T Consensus 460 dkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 460 DKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred hHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999987
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.6e-38 Score=291.83 Aligned_cols=346 Identities=27% Similarity=0.340 Sum_probs=308.9
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh----hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhH
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS----ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDR 473 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~ 473 (767)
-+|.|.+-+.++| .+.+..|..-++++.+ ...+.+++.|++|.++++++. ...-.+..|+|+|.|+++++....
T Consensus 72 elp~lt~~l~SdD-ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 72 ELPQLTQQLFSDD-IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhHHHHHHHhhhH-HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 4588888888888 8889999999999988 346788999999999999954 667789999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCC-CCccchhchHHHHHHHhcCCC--HHHHHHHHHHHHhhc
Q 004225 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPE-PPFDQVRPALPALAQLVHSND--NDVLRYACEALSCLS 550 (767)
Q Consensus 474 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~ 550 (767)
+.+++.|+++.++++| .+++.++++.++|+|+|++.+++. ++.+...|++..++.++.++. ..+.+++.|+|+|+|
T Consensus 151 kvVvd~~AVPlfiqlL-~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 151 KVVVDAGAVPLFIQLL-SSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred EEEEeCCchHHHHHHH-cCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 9999999999999999 899999999999999999999855 466777899999999998665 488999999999999
Q ss_pred cCChh--HHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeeh------------------hhhHHH
Q 004225 551 DGTND--KIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT------------------GIAKEA 610 (767)
Q Consensus 551 ~~~~~--~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l------------------~v~~~a 610 (767)
++... ....+ +..+|.|.+++.+.|+ ++...|+|++.++++++.+..+.+ .++..|
T Consensus 230 RGknP~P~w~~i--sqalpiL~KLiys~D~--evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa 305 (526)
T COG5064 230 RGKNPPPDWSNI--SQALPILAKLIYSRDP--EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA 305 (526)
T ss_pred CCCCCCCchHHH--HHHHHHHHHHHhhcCH--HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence 88543 33323 2489999999999999 999999999999999988777766 778899
Q ss_pred HHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHH
Q 004225 611 CRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPE 690 (767)
Q Consensus 611 ~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 690 (767)
++.++||+.++..+.+.+++.|+++.+..+|.++...+|++|||+++|+..+ +.++++.+++++.+++|+.++.+.+..
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAG-nteqiqavid~nliPpLi~lls~ae~k 384 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAG-NTEQIQAVIDANLIPPLIHLLSSAEYK 384 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccC-CHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 004225 691 IVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 691 v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 761 (767)
+++.|+||+.|....+-.. ....+.+...|+++.|..++.-.+..+-+.+.+++++++...
T Consensus 385 ~kKEACWAisNatsgg~~~----------PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 385 IKKEACWAISNATSGGLNR----------PDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVG 445 (526)
T ss_pred HHHHHHHHHHhhhccccCC----------chHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhh
Confidence 9999999999999876532 235778889999999999999988888899999999887644
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-36 Score=307.80 Aligned_cols=345 Identities=28% Similarity=0.357 Sum_probs=309.8
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHh----hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHH
Q 004225 400 VARFVEFLTREDNPQLQLEAARALTNIAS----ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRD 474 (767)
Q Consensus 400 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~ 474 (767)
.+..+..+.+++ +..+..|...++++.+ .....++..|++|.++.+|.. .++.++..|+|+|.|+|+++.+..+
T Consensus 68 ~~~~~~~~~S~~-~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDD-PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCC-HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 677788888888 8889999999999999 336677778999999999975 6699999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC-CccchhchHHHHHHHhcCCCH-HHHHHHHHHHHhhccC
Q 004225 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP-PFDQVRPALPALAQLVHSNDN-DVLRYACEALSCLSDG 552 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~ 552 (767)
.+++.|+++.++.++ .+++.++++.|+|+|+|++.+++.. +.....|+++.|+.++...+. .+.+.+.|+|+|+|++
T Consensus 147 ~vv~agavp~fi~Ll-~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLL-SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred ccccCCchHHHHHHh-cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 999999999999999 9999999999999999999999554 666778999999999998775 8899999999999998
Q ss_pred ChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeeh------------------hhhHHHHHHH
Q 004225 553 TNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT------------------GIAKEACRTI 614 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l------------------~v~~~a~~~l 614 (767)
.......-.-..++|.|..++.+.|. ++...|+|++++++++..+.++.+ .++..|++++
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~--~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDE--EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 74322222223589999999999999 999999999999999999888877 6788999999
Q ss_pred hhhccCCHHHHHHHHHcCCHHHHHHHHh-cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHH
Q 004225 615 SNITAGNREQIQVVIDAGVIGPLVDLLQ-NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVT 693 (767)
Q Consensus 615 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 693 (767)
+||+.++..+.+.++++|+++.|..++. +....+|++|||+++|++.+ ++++++.++++|+++.|+.+++.++-++++
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG-~~~qiqaVida~l~p~Li~~l~~~ef~~rK 382 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG-NQEQIQAVIDANLIPVLINLLQTAEFDIRK 382 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC-CHHHHHHHHHcccHHHHHHHHhccchHHHH
Confidence 9999999999999999999999999999 55667999999999999996 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 004225 694 ICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 694 ~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 761 (767)
+|+|||.|++..+... -...+.+.|.++.+..++.-++.++...+.+.+++++...
T Consensus 383 EAawaIsN~ts~g~~~------------qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 383 EAAWAISNLTSSGTPE------------QIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHHHHHHhhcccCCHH------------HHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999877643 3677889999999999998899999999999999987643
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=328.00 Aligned_cols=391 Identities=20% Similarity=0.231 Sum_probs=332.2
Q ss_pred HHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc-C--CChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---
Q 004225 355 IQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL-L--PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--- 428 (767)
Q Consensus 355 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--- 428 (767)
.-+.|.+|.+++.++++++..+..|+..|.+++ + .....+++.|++|.|++++++++++.+|+.|+|+|.+++.
T Consensus 185 IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~ 264 (2102)
T PLN03200 185 TLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSK 264 (2102)
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCH
Confidence 345689999999999999999999999998888 3 3578889999999999999876547999999999999999
Q ss_pred hhhHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHHhcCCch-----------hHH--------------
Q 004225 429 ENTNVVIDGGAVPIFVKLLSSPS---------DDVREKAVWALGNIARSSPR-----------DRD-------------- 474 (767)
Q Consensus 429 ~~~~~~~~~~~l~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~-------------- 474 (767)
++++.+++.|++|.|++++..++ ..++++|+|+|+|++.+.+. .++
T Consensus 265 e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayl 344 (2102)
T PLN03200 265 EAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYA 344 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHH
Confidence 78999999999999999998654 34699999999999974222 000
Q ss_pred ------------------------------------------------------HHHhcCCHHHHHHHHccCCChHHHHH
Q 004225 475 ------------------------------------------------------LVLSEKALIPLLAQLNKHAKPSMLRN 500 (767)
Q Consensus 475 ------------------------------------------------------~~~~~g~i~~L~~ll~~~~~~~~~~~ 500 (767)
.+.+.|+++.|+.++ ...+.+++..
T Consensus 345 l~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL-~~~~~evQ~~ 423 (2102)
T PLN03200 345 LMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI-TMATADVQEE 423 (2102)
T ss_pred HHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh-ccCCHHHHHH
Confidence 011223344444455 4556789999
Q ss_pred HHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCC
Q 004225 501 ATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPF 579 (767)
Q Consensus 501 ~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 579 (767)
++|+|++++.++ .....+...+++|.|+++|.+.+.++++.++|++++++.+++++...+++.|++|.|+++|.+++.
T Consensus 424 Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~- 502 (2102)
T PLN03200 424 LIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQ- 502 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH-
Confidence 999999999876 555777788999999999999999999999999999999988888889999999999999999998
Q ss_pred CcccchHHHHHhhhhccCCcceeeh-------------------------------------------------------
Q 004225 580 PFGLTPPLWTVRYIVKGDGFLTQCT------------------------------------------------------- 604 (767)
Q Consensus 580 ~~v~~~a~~~L~~l~~~~~~~~~~l------------------------------------------------------- 604 (767)
.++..|+|+|+|++.++++....+
T Consensus 503 -~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~ 581 (2102)
T PLN03200 503 -KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESK 581 (2102)
T ss_pred -HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHH
Confidence 999999999999986543221111
Q ss_pred ------------------------------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh
Q 004225 605 ------------------------------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ 642 (767)
Q Consensus 605 ------------------------------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~ 642 (767)
.+++.|+|++.|++.+.++..+.++..|++++++.+++
T Consensus 582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs 661 (2102)
T PLN03200 582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT 661 (2102)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888888888888999999999999999
Q ss_pred cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHH
Q 004225 643 NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHY 722 (767)
Q Consensus 643 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~ 722 (767)
+++++++++|+|+|+|++.+++.++...+++.|++++|++++++.+.+++..|+.+|.+++..++.
T Consensus 662 s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~-------------- 727 (2102)
T PLN03200 662 NNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV-------------- 727 (2102)
T ss_pred cCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--------------
Confidence 999999999999999999887888888889999999999999999999999999999999986553
Q ss_pred HHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Q 004225 723 ARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCGV 762 (767)
Q Consensus 723 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 762 (767)
+..+.++|+++.|.+++.+.+++.|+.|.++|.++.....
T Consensus 728 ~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 728 AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 4455688999999999999999999999999988765543
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.6e-31 Score=310.18 Aligned_cols=396 Identities=19% Similarity=0.175 Sum_probs=342.7
Q ss_pred HHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc---CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---
Q 004225 355 IQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL---LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--- 428 (767)
Q Consensus 355 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--- 428 (767)
+.+-++++.++.++...+.+++..+++.|..++ ....+.+.+.|+++.|+++|.+++ +.+|..|++++++++.
T Consensus 400 L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~nd 478 (2102)
T PLN03200 400 LNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVD 478 (2102)
T ss_pred HHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCH
Confidence 445578899999999999999999999999999 334678889999999999999988 8999999999999997
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhh
Q 004225 429 ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRF 508 (767)
Q Consensus 429 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 508 (767)
+++..+++.|++|.|+++|.+++.+++.+|+|+|+|++.+.++.+..+.+.|++++|+++| ++++...++.++|+|.++
T Consensus 479 enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nL 557 (2102)
T PLN03200 479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKL 557 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999998777777777889999999999 788999999999999999
Q ss_pred cCCCCCC--------------------------------------CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 004225 509 CQGKPEP--------------------------------------PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLS 550 (767)
Q Consensus 509 ~~~~~~~--------------------------------------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 550 (767)
+...... ......++++.|+.++++++.++++.|+|+|.+++
T Consensus 558 i~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 558 VRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred HhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6432110 00113579999999999999999999999999999
Q ss_pred cCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcc-eee-h-----------------hhhHHHH
Q 004225 551 DGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFL-TQC-T-----------------GIAKEAC 611 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~-l-----------------~v~~~a~ 611 (767)
.+.++..+.++..|+++.++.++++.+. +++..|.|+|++++.+.... ... + ++...|+
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~--~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al 715 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTE--AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAV 715 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCCh--HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHH
Confidence 9999988999999999999999999998 99999999999999643322 111 1 7889999
Q ss_pred HHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHH-H-HHHHHcCChHHHHhhhcCCCH
Q 004225 612 RTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ-I-KYLVRKGCIKPLCDLLLYADP 689 (767)
Q Consensus 612 ~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~-~-~~l~~~~~i~~L~~ll~~~~~ 689 (767)
.+|.|++...+ ....+.+.|+++.|++++++++++.|+.|+|+|.+++..++.+. . .++...|.+.+|+++|+..|.
T Consensus 716 ~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~ 794 (2102)
T PLN03200 716 CALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDL 794 (2102)
T ss_pred HHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCc
Confidence 99999999754 45667788999999999999999999999999999999876555 3 566779999999999998877
Q ss_pred HHHHH--HHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 004225 690 EIVTI--CLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 690 ~v~~~--al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 761 (767)
+.... |+.+|..+.+..+.... ..+++...++.-+.++.|.+.+.+.+|.++++|+++|+++.++-
T Consensus 795 ~~~~~~~al~~l~~l~~~~~~~~~------~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 795 DSSATSEALEALALLARTKGGANF------SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred chhhHHHHHHHHHHHHhhcccCCC------CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 76665 99999999985443332 45778999999999999988889999999999999999987653
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-27 Score=225.69 Aligned_cols=362 Identities=20% Similarity=0.230 Sum_probs=315.0
Q ss_pred HHHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--h
Q 004225 354 TIQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--E 429 (767)
Q Consensus 354 ~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~ 429 (767)
.+..++++..++..+.++..++|..+...+.+++ +.+...+...|++.++.++-++.+ ..+|..|..+|.++.. +
T Consensus 121 liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs~E 199 (550)
T KOG4224|consen 121 LIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHSRE 199 (550)
T ss_pred EEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhhhh
Confidence 3556678888888888999999999999999999 788889999999999999888888 8999999999999999 9
Q ss_pred hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcC--CHHHHHHHHccCCChHHHHHHHHHHHh
Q 004225 430 NTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEK--ALIPLLAQLNKHAKPSMLRNATKTLSR 507 (767)
Q Consensus 430 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~~~~~~L~~ 507 (767)
+++.++..|++|.|+.++++.|.++|++|..+++|++.+ ...|+.+.+.+ .++.|++++ +++++.++..|..+|.|
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999965 55778888888 999999999 99999999999999999
Q ss_pred hcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHH
Q 004225 508 FCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPL 587 (767)
Q Consensus 508 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~ 587 (767)
++.+......+...|.+|.++++++++......+...|+.|++-+.-+ ...+.++|++..++.+|+..+. +
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dn--E------ 348 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDN--E------ 348 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCc--h------
Confidence 999988888889999999999999999988888999999999977543 3347789999999999999887 3
Q ss_pred HHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHH
Q 004225 588 WTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ 667 (767)
Q Consensus 588 ~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 667 (767)
+++..|..++.|+++.+......++++|.+|.+++++.++...+|.+...+++.++.. ...
T Consensus 349 -----------------eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~ 409 (550)
T KOG4224|consen 349 -----------------EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DND 409 (550)
T ss_pred -----------------hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--ccc
Confidence 4777788888888888888899999999999999999999999999999999999884 466
Q ss_pred HHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHh-----hchHHHHHHHhcCC
Q 004225 668 IKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEA-----AEGFKKIEDLKRHD 742 (767)
Q Consensus 668 ~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~g~~~~l~~l~~~~ 742 (767)
...+.+.|+++.|+.+..+.+.+++-.|..||.|+... .+.|.+.++. .|.-..|.++..++
T Consensus 410 k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~-------------v~~YarviEawd~P~~gi~g~L~Rfl~S~ 476 (550)
T KOG4224|consen 410 KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD-------------VEHYARVIEAWDHPVQGIQGRLARFLASH 476 (550)
T ss_pred HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh-------------hHHHHHHHHHhcCcchhHHHHHHHHHhhh
Confidence 67889999999999999999999999999999999974 3446666532 24445566666666
Q ss_pred ChHHHHHHHHHHHHhcC
Q 004225 743 SNGICEKAVKILEIYWS 759 (767)
Q Consensus 743 ~~~v~~~a~~~l~~~~~ 759 (767)
..-++..|.|.+..+..
T Consensus 477 ~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 477 ELTFRHIARWTIQQLLE 493 (550)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777665544
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.4e-26 Score=213.85 Aligned_cols=333 Identities=19% Similarity=0.229 Sum_probs=290.0
Q ss_pred chhhhcccchHHHHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHH
Q 004225 343 ACWAWKDDLNTTIQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAA 420 (767)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~ 420 (767)
|+++.-++.+..+..+|++..+.++-++.+..+|..+..+|.++. .++++.++..|++|.|+.++++.+ +++|+.+.
T Consensus 151 tnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d-~dvqyyct 229 (550)
T KOG4224|consen 151 TNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCT 229 (550)
T ss_pred hhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCC-hhHHHHHH
Confidence 444444566677899999999999889999999999999999999 667888999999999999999999 99999999
Q ss_pred HHHHHHHh--hhhHHHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChH
Q 004225 421 RALTNIAS--ENTNVVIDGG--AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPS 496 (767)
Q Consensus 421 ~~L~~l~~--~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 496 (767)
.++.+++- ..++.+++.+ .+|.|+++++++++.++.+|..+|+|++++.. +...+++.|.+|.+++++ +++...
T Consensus 230 taisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~p 307 (550)
T KOG4224|consen 230 TAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGP 307 (550)
T ss_pred HHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchh
Confidence 99999999 7788888877 99999999999999999999999999998755 556688999999999999 888888
Q ss_pred HHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCC-HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcC
Q 004225 497 MLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSND-NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLH 575 (767)
Q Consensus 497 ~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 575 (767)
..-..+.++.|++..+-+.-.+...|++..|+.++.-.| ++++-+|..+|.|++.........+.++|.+|.+..++.+
T Consensus 308 lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 308 LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD 387 (550)
T ss_pred HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc
Confidence 888889999999999878888889999999999999665 6699999999999998877888889999999999999999
Q ss_pred CCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHH
Q 004225 576 PLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARA 655 (767)
Q Consensus 576 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 655 (767)
... +++.+.-.+++.++.. ......+.+.|+++.|+.+..+.+.+++.+|+.+
T Consensus 388 ~pv--------------------------svqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 388 GPV--------------------------SVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred CCh--------------------------hHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHH
Confidence 988 5555555555555543 3445678899999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHc------CChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 004225 656 ISNAISGGTHEQIKYLVRK------GCIKPLCDLLLYADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 656 L~nl~~~~~~~~~~~l~~~------~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 707 (767)
|.|++.. .++...++++ |+-..|.+++.+.+..++..+.|.|..+....+
T Consensus 441 L~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 441 LINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999985 5555555653 555679999999999999999999999998643
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=3.2e-22 Score=216.57 Aligned_cols=362 Identities=23% Similarity=0.218 Sum_probs=304.0
Q ss_pred CHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhh
Q 004225 372 DSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLL 447 (767)
Q Consensus 372 ~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL 447 (767)
.......|...|.+++ ......+.+.|+++.|+++|++++ .++...++.+|.+++. +++..+.+.|+++.|.+++
T Consensus 262 QeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 4455567788899999 444667789999999999999988 8999999999999999 8999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHH
Q 004225 448 SSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPAL 527 (767)
Q Consensus 448 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L 527 (767)
.+++.+++..++++|.|++.+ ++.|..+++.|+++.++.++ .+ +..+..|+.+|++++.++..+.....++++|.+
T Consensus 341 ~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL-~d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L 416 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELL-KD--PNFREVALKILYNLSMDDEARSMFAYTDCIPQL 416 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHh-CC--CchHHHHHHHHHHhccCHhhHHHHhhcchHHHH
Confidence 999999999999999999976 66899999999999999999 43 456678999999999998777777888999999
Q ss_pred HHHhc-CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeeh--
Q 004225 528 AQLVH-SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT-- 604 (767)
Q Consensus 528 ~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-- 604 (767)
+.++- .+++++...+++.+.|++... .+.+.+++.++++.|++..-.... .-.++.+.|++.+++.....+
T Consensus 417 ~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D-----~lLlKlIRNiS~h~~~~k~~f~~ 490 (708)
T PF05804_consen 417 MQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD-----PLLLKLIRNISQHDGPLKELFVD 490 (708)
T ss_pred HHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc-----HHHHHHHHHHHhcCchHHHHHHH
Confidence 98765 566778888999999999876 455778888888888887755433 235578889988773221111
Q ss_pred ---------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--CchhHHHHHHHHHHhhcCCCHHH
Q 004225 605 ---------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA--EFFTKKEAARAISNAISGGTHEQ 667 (767)
Q Consensus 605 ---------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~ 667 (767)
+...+++++++|+...+.+..+.+.+.+++|.+.+.|..+ .+++.-+++..++.++. +++.
T Consensus 491 ~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~ 568 (708)
T PF05804_consen 491 FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPEC 568 (708)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHH
Confidence 7788999999999987777777777889999999999865 45899999999999997 5888
Q ss_pred HHHHHHcCChHHHHhhhcC--CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChH
Q 004225 668 IKYLVRKGCIKPLCDLLLY--ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNG 745 (767)
Q Consensus 668 ~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~ 745 (767)
+..+.+.|+++.|+++++. .|.+++.+.+.++++++...+. ...++.+.++...+..+++++|++
T Consensus 569 A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------------r~~ll~~~~~~~ylidL~~d~N~~ 635 (708)
T PF05804_consen 569 APLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------------REVLLKETEIPAYLIDLMHDKNAE 635 (708)
T ss_pred HHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------------HHHHHhccchHHHHHHHhcCCCHH
Confidence 8888899999999999985 5789999999999999986543 345667889999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 004225 746 ICEKAVKILEIYWS 759 (767)
Q Consensus 746 v~~~a~~~l~~~~~ 759 (767)
|++.|..+|.-+-.
T Consensus 636 ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 636 IRKVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888876644
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.87 E-value=4.1e-20 Score=200.39 Aligned_cols=345 Identities=17% Similarity=0.193 Sum_probs=286.4
Q ss_pred chHHHHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh
Q 004225 351 LNTTIQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS 428 (767)
Q Consensus 351 ~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 428 (767)
......+-+.++.+++.|.+++.+....++..|.+++ ..+...+.+.|+++.|.+++.+++ .+.+..|.++|.|++.
T Consensus 282 ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf 360 (708)
T PF05804_consen 282 VELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF 360 (708)
T ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc
Confidence 3344556678999999999999999999999999999 677899999999999999999998 8999999999999999
Q ss_pred --hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHH
Q 004225 429 --ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLS 506 (767)
Q Consensus 429 --~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~ 506 (767)
+.+..+++.|++|.|+.+|.+++ .+..|+.+|.+++.+ ++.+.++...++++.+++++...+++.+...+++.+.
T Consensus 361 d~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 361 DPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLI 437 (708)
T ss_pred CHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHH
Confidence 88999999999999999998654 556799999999975 5688889999999999999867777888888999999
Q ss_pred hhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchH
Q 004225 507 RFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPP 586 (767)
Q Consensus 507 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a 586 (767)
|++.+..+...+...++++.|+....+....+ .+..+.|++.+++.....+. +++..++..+...+. ++....+
T Consensus 438 NLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~-ee~~vE~ 511 (708)
T PF05804_consen 438 NLALNKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDS-EEFVVEC 511 (708)
T ss_pred HHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCc-HHHHHHH
Confidence 99999866666666788888886654433222 34689999988755444454 488888888887653 5899999
Q ss_pred HHHHhhhhccCCcceeeh--------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--
Q 004225 587 LWTVRYIVKGDGFLTQCT--------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA-- 644 (767)
Q Consensus 587 ~~~L~~l~~~~~~~~~~l--------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-- 644 (767)
+.+|+|++..+....+.+ ++..+++..+|.++. ++.....+.+.|+++.|+++++..
T Consensus 512 LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqe 590 (708)
T PF05804_consen 512 LGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQE 590 (708)
T ss_pred HHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCc
Confidence 999999986654333333 788899999998876 467777788999999999999865
Q ss_pred CchhHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhh
Q 004225 645 EFFTKKEAARAISNAISGGTHEQIKYLVR-KGCIKPLCDLLLYADPEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 645 ~~~v~~~a~~~L~nl~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 708 (767)
+.+..-..++++.++..+ ++.+..++. .+++.+|+++++++|++++..|-.+|.-++...+.
T Consensus 591 DdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~ 653 (708)
T PF05804_consen 591 DDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE 653 (708)
T ss_pred hHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH
Confidence 578999999999999997 445556655 78999999999999999999999999998875443
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.80 E-value=7e-18 Score=178.07 Aligned_cols=378 Identities=21% Similarity=0.225 Sum_probs=276.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc---CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-----hhh
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL---LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-----ENT 431 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-----~~~ 431 (767)
.+|+.+.+|.+.++.++-.|+.+++.++ +.-...+.+.|+|+.|+.++.+.. .+++.+|+++|+|+.. +++
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccc
Confidence 6999999999999999999999999999 344567778899999999999999 9999999999999999 477
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cC------------CChHH
Q 004225 432 NVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KH------------AKPSM 497 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~------------~~~~~ 497 (767)
-.+.+.++++.++++|.. .|.++++++..+|+|+++. +..+..++ ..++..|...+. .. .+.++
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCccccccccee
Confidence 788899999999999987 8999999999999999987 33444443 445666665542 11 14688
Q ss_pred HHHHHHHHHhhcCCC-CC-CCccchhchHHHHHHHhc------CCCHHHHHHHHHHHHhhccCChh-----HHHHHHhcC
Q 004225 498 LRNATKTLSRFCQGK-PE-PPFDQVRPALPALAQLVH------SNDNDVLRYACEALSCLSDGTND-----KIQAVIEAD 564 (767)
Q Consensus 498 ~~~~~~~L~~l~~~~-~~-~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~~ 564 (767)
..++.++|.|++... +. .++-...|.|..|+..++ +-|...+++++-++.|++..-.. ..+.....+
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 999999999999865 33 345566889999998886 45678889999999999855321 111111111
Q ss_pred ------c--------HHHHHHHhcCCCC---C-----C-----cccchHHHH-HhhhhccCCcceeehhhhHHHHHHHhh
Q 004225 565 ------V--------CPRLVKLLLHPLP---F-----P-----FGLTPPLWT-VRYIVKGDGFLTQCTGIAKEACRTISN 616 (767)
Q Consensus 565 ------~--------~~~L~~lL~~~~~---~-----~-----~v~~~a~~~-L~~l~~~~~~~~~~l~v~~~a~~~l~n 616 (767)
. ...--+...+.+. + . -.+..+++. +..+...... .+.+.++.+|-|
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~-----~TlEasaGaLQN 545 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKND-----NTLEASAGALQN 545 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcch-----HHHHHhhhhHhh
Confidence 0 0000000000000 0 0 001111221 1111110000 678899999999
Q ss_pred hccCCH----HHHHHH-HHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC----
Q 004225 617 ITAGNR----EQIQVV-IDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA---- 687 (767)
Q Consensus 617 l~~~~~----~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~---- 687 (767)
++++.. ..+..+ .+..+++.++++++.+++.|...++.+|.|++.+ . ..+.++..++++.|++.+...
T Consensus 546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~-rnk~ligk~a~~~lv~~Lp~~~~~~ 622 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--I-RNKELIGKYAIPDLVRCLPGSGPST 622 (717)
T ss_pred hhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--c-hhhhhhhcchHHHHHHhCcCCCCCc
Confidence 999533 333344 5778999999999999999999999999999996 2 334567789999999999854
Q ss_pred --CHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC-CChHHHHHHHHHHHHhcCCC
Q 004225 688 --DPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH-DSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 688 --~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~~ 761 (767)
+.++...++..|.+++... ...+..+.+.+++++|..|..+ .++.+.+.|..++..+|..+
T Consensus 623 ~~sedtv~~vc~tl~niv~~~-------------~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 623 SLSEDTVRAVCHTLNNIVRKN-------------VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred CchHHHHHHHHHhHHHHHHHh-------------HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999632 1235556689999999999776 45688999999999888654
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=5.9e-18 Score=202.11 Aligned_cols=286 Identities=19% Similarity=0.267 Sum_probs=148.0
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
+|++|++.++. +..++. + ...+++|+.|+++++..+..+ +.+..+++|++|++.+|..+..+|..
T Consensus 612 ~L~~L~L~~s~-l~~L~~-~-~~~l~~Lk~L~Ls~~~~l~~i----------p~ls~l~~Le~L~L~~c~~L~~lp~s-- 676 (1153)
T PLN03210 612 NLVKLQMQGSK-LEKLWD-G-VHSLTGLRNIDLRGSKNLKEI----------PDLSMATNLETLKLSDCSSLVELPSS-- 676 (1153)
T ss_pred CCcEEECcCcc-cccccc-c-cccCCCCCEEECCCCCCcCcC----------CccccCCcccEEEecCCCCccccchh--
Confidence 44555554432 333321 1 134555555555555444433 23344566666666666666555543
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
...+++|+.|++++|..+...... ..+++|+.|.+++|..+...+. ..++|+.|.+.++.
T Consensus 677 -i~~L~~L~~L~L~~c~~L~~Lp~~----i~l~sL~~L~Lsgc~~L~~~p~---------------~~~nL~~L~L~~n~ 736 (1153)
T PLN03210 677 -IQYLNKLEDLDMSRCENLEILPTG----INLKSLYRLNLSGCSRLKSFPD---------------ISTNISWLDLDETA 736 (1153)
T ss_pred -hhccCCCCEEeCCCCCCcCccCCc----CCCCCCCEEeCCCCCCcccccc---------------ccCCcCeeecCCCc
Confidence 344566666666666655543221 1355666666666654333221 12344444444433
Q ss_pred C-CCC-cccccCCceeeeeeccccc------chhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccch
Q 004225 167 A-SLP-YEKVENGMWVEIREAFHLE------HILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLK 238 (767)
Q Consensus 167 ~-~~~-~~~~~~l~~l~i~~~~~l~------~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 238 (767)
. .+| ...+++|+.|.+.++.... .+.......+++|++|++++|+.+..++...+.+++|+.|+|++|+.++
T Consensus 737 i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 737 IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 2 111 1123344444444432110 0000001124567777777776666655556667777777777777777
Q ss_pred hhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCC
Q 004225 239 IVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDC 318 (767)
Q Consensus 239 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 318 (767)
.++... ++++|++|++++|..+..++.. .++|+.|++++. .++.++.. ...+++|++|++.+|
T Consensus 817 ~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~n-~i~~iP~s--i~~l~~L~~L~L~~C 879 (1153)
T PLN03210 817 TLPTGI---NLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSRT-GIEEVPWW--IEKFSNLSFLDMNGC 879 (1153)
T ss_pred eeCCCC---CccccCEEECCCCCcccccccc-----------ccccCEeECCCC-CCccChHH--HhcCCCCCEEECCCC
Confidence 665432 4677777777777766655421 245555555542 44444422 245667777777777
Q ss_pred CCcccccccCCCCcccchhhccccch
Q 004225 319 PDMKIFSEGKLSTPKLHKVERHGEAC 344 (767)
Q Consensus 319 ~~l~~~~~~~~~~~~L~~l~i~~~~~ 344 (767)
++++.+|......++|+.++++++..
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCcc
Confidence 77766665544555566666666543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=1.7e-17 Score=198.25 Aligned_cols=270 Identities=19% Similarity=0.244 Sum_probs=207.7
Q ss_pred CCCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccccccccc
Q 004225 3 CGIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFC 82 (767)
Q Consensus 3 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (767)
..+++|+.|++++|..+..+|.. ..+++|++|++.+|..+.++ +..+..+++|+.|++.+|.+++.+|
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L~L~~c~~L~~l---------p~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDL---SMATNLETLKLSDCSSLVEL---------PSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCcc---ccCCcccEEEecCCCCcccc---------chhhhccCCCCEEeCCCCCCcCccC
Confidence 35889999999999888887643 46889999999999988766 4566778999999999999999988
Q ss_pred CCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeee
Q 004225 83 TGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQI 162 (767)
Q Consensus 83 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 162 (767)
.. ..+++|+.|++++|..+.... ...++|++|++.++.. ..+|. ...+++|+.|.+
T Consensus 699 ~~----i~l~sL~~L~Lsgc~~L~~~p------~~~~nL~~L~L~~n~i-~~lP~-------------~~~l~~L~~L~l 754 (1153)
T PLN03210 699 TG----INLKSLYRLNLSGCSRLKSFP------DISTNISWLDLDETAI-EEFPS-------------NLRLENLDELIL 754 (1153)
T ss_pred Cc----CCCCCCCEEeCCCCCCccccc------cccCCcCeeecCCCcc-ccccc-------------cccccccccccc
Confidence 63 368999999999998876532 2357899999988753 22111 013556676766
Q ss_pred cCCCCC---------CC--cccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEe
Q 004225 163 GGYSAS---------LP--YEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVV 231 (767)
Q Consensus 163 ~~~~~~---------~~--~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l 231 (767)
.++... .+ ....++|+.|.+.+|+.+..+ +.....+++|+.|++.+|..++.++... .+++|++|++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCcccc-ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 654320 00 112357899999999887776 3345668999999999999988765544 7899999999
Q ss_pred ccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccc
Q 004225 232 SRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLE 311 (767)
Q Consensus 232 ~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 311 (767)
++|..++.++.. .++|+.|++.+. .++.+|..... +++|+.|.+++|++|++++.. ...+++|+
T Consensus 833 s~c~~L~~~p~~-----~~nL~~L~Ls~n-~i~~iP~si~~--------l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~ 896 (1153)
T PLN03210 833 SGCSRLRTFPDI-----STNISDLNLSRT-GIEEVPWWIEK--------FSNLSFLDMNGCNNLQRVSLN--ISKLKHLE 896 (1153)
T ss_pred CCCCcccccccc-----ccccCEeECCCC-CCccChHHHhc--------CCCCCEEECCCCCCcCccCcc--cccccCCC
Confidence 999998876432 578999999875 47777765544 899999999999999999864 45789999
Q ss_pred eEeecCCCCcccccc
Q 004225 312 RLVVDDCPDMKIFSE 326 (767)
Q Consensus 312 ~L~i~~c~~l~~~~~ 326 (767)
.+++.+|++|+.++.
T Consensus 897 ~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 897 TVDFSDCGALTEASW 911 (1153)
T ss_pred eeecCCCcccccccC
Confidence 999999999986543
No 14
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.1e-16 Score=161.81 Aligned_cols=365 Identities=22% Similarity=0.282 Sum_probs=283.6
Q ss_pred CHHHHHhhhcCC-CHHHHHHHHHHHHHhc---CCC-hHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhh
Q 004225 360 SLPGMLAGVWSD-DSGLQLEATTWFRKLL---LPP-SEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENT 431 (767)
Q Consensus 360 ~i~~l~~~l~s~-~~~~~~~a~~~L~~l~---~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~ 431 (767)
.+..++..++.+ |+..|++|+..|+... ++. ...+--.-++|.|+.+++++.+.+++..|+++|.+++. +..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 577888899866 9999999999999887 222 33333456799999999999889999999999999999 667
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcC
Q 004225 432 NVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 510 (767)
..++++++||.|+.-|.. +..++.++++.+|..|+..-+ +.+++.|++...+.++ +.-+..+++.|+.+..|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 788899999999985554 889999999999999997644 4688999999999999 88899999999999999999
Q ss_pred CCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC---ChhHHHHHHhcCcHHHHHHHhcCCCC--CCcccch
Q 004225 511 GKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG---TNDKIQAVIEADVCPRLVKLLLHPLP--FPFGLTP 585 (767)
Q Consensus 511 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~--~~~v~~~ 585 (767)
.-+...+.....++|.|..+++..|.+..+.++-++..++++ .++..+.++..+.+....+++.-... ...+..-
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 887778888899999999999999999999999999999855 45677778888888888888876533 1133334
Q ss_pred HHHHHhhhhccCCcceeeh---------------------------------------------------h---------
Q 004225 586 PLWTVRYIVKGDGFLTQCT---------------------------------------------------G--------- 605 (767)
Q Consensus 586 a~~~L~~l~~~~~~~~~~l---------------------------------------------------~--------- 605 (767)
.++.+.-++.+.+.....+ +
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 4555555555433111111 0
Q ss_pred ------hh------------------HHHHHHHh-------------h---------hccCCHHHHHHHHHcCCHHHHHH
Q 004225 606 ------IA------------------KEACRTIS-------------N---------ITAGNREQIQVVIDAGVIGPLVD 639 (767)
Q Consensus 606 ------v~------------------~~a~~~l~-------------n---------l~~~~~~~~~~~~~~~~i~~L~~ 639 (767)
.. ..-.+++. + +..+.++..+.++. .++|.|++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve 562 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE 562 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence 00 00001111 0 11122333333333 37899999
Q ss_pred HHhc-CCchhHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccc
Q 004225 640 LLQN-AEFFTKKEAARAISNAISGGTHEQIKYLVRK-GCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANR 717 (767)
Q Consensus 640 ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~ 717 (767)
+..+ .++.||..+..||..+....+.+.+..++.. .+-..+-.++.++|..+..-|+....-++++
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeK------------ 630 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEK------------ 630 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHH------------
Confidence 8875 4899999999999999998889999888874 5556788899999999999999999999986
Q ss_pred cccHHHHHHHhhchHHHHHHHhcC
Q 004225 718 YFNHYARLVEAAEGFKKIEDLKRH 741 (767)
Q Consensus 718 ~~~~~~~~l~~~g~~~~l~~l~~~ 741 (767)
.++.+...|+++|++..+.+|...
T Consensus 631 lpd~F~~~F~REGV~~~v~~L~~~ 654 (1051)
T KOG0168|consen 631 LPDTFSPSFRREGVFHAVKQLSVD 654 (1051)
T ss_pred hHHHhhhhHhhhhHHHHHHHHhcc
Confidence 445578889999999999999763
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.67 E-value=2.4e-14 Score=151.61 Aligned_cols=346 Identities=15% Similarity=0.131 Sum_probs=265.2
Q ss_pred cccchHHHHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc-----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHH
Q 004225 348 KDDLNTTIQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL-----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARA 422 (767)
Q Consensus 348 ~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~-----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 422 (767)
+.+.+...+.+++||.++.++.+...+++.+|+.+|+++. ..+.-.+.+.++++.++++++...|.++++.+..+
T Consensus 264 d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~ 343 (717)
T KOG1048|consen 264 DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGI 343 (717)
T ss_pred hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHH
Confidence 4555677889999999999999999999999999999999 24677888999999999999985558999999999
Q ss_pred HHHHHh-hhhHHHHhCCChHHHHHhhCC--------------CCHHHHHHHHHHHHHHhcCCchhHHHHHhc-CCHHHHH
Q 004225 423 LTNIAS-ENTNVVIDGGAVPIFVKLLSS--------------PSDDVREKAVWALGNIARSSPRDRDLVLSE-KALIPLL 486 (767)
Q Consensus 423 L~~l~~-~~~~~~~~~~~l~~L~~lL~~--------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~ 486 (767)
|.|+.+ +..+..+-..++..|-.-+-. .+.++-.++..+|.|+++...+.|+.+.+. |.|..|+
T Consensus 344 LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~ 423 (717)
T KOG1048|consen 344 LWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALL 423 (717)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHH
Confidence 999999 555544444556666553321 135788999999999999888888888665 6899999
Q ss_pred HHHc-----cCCChHHHHHHHHHHHhhcCCCC--------------------------------CCCc------------
Q 004225 487 AQLN-----KHAKPSMLRNATKTLSRFCQGKP--------------------------------EPPF------------ 517 (767)
Q Consensus 487 ~ll~-----~~~~~~~~~~~~~~L~~l~~~~~--------------------------------~~~~------------ 517 (767)
..++ ...|....++|+..+.|++.... ..+.
T Consensus 424 ~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe 503 (717)
T KOG1048|consen 424 FSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPE 503 (717)
T ss_pred HHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcc
Confidence 8884 35678889999999999975321 0000
Q ss_pred ----------cchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChh----HHHHH-HhcCcHHHHHHHhcCCCCCCc
Q 004225 518 ----------DQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTND----KIQAV-IEADVCPRLVKLLLHPLPFPF 581 (767)
Q Consensus 518 ----------~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~----~~~~~-~~~~~~~~L~~lL~~~~~~~~ 581 (767)
.....++.....+++ +.+..+.++++.+|-|++..... ....+ ....+.+.++++++..+.
T Consensus 504 ~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~--- 580 (717)
T KOG1048|consen 504 RATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDS--- 580 (717)
T ss_pred cccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCc---
Confidence 111345555555555 56689999999999999977542 22333 456789999999999999
Q ss_pred ccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC------CchhHHHHHHH
Q 004225 582 GLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA------EFFTKKEAARA 655 (767)
Q Consensus 582 v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~v~~~a~~~ 655 (767)
.+.+.++.++.|++.+ ...+.++..++++.|++.|... +.++...++.+
T Consensus 581 -----------------------~vv~s~a~~LrNls~d--~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~t 635 (717)
T KOG1048|consen 581 -----------------------DVVRSAAGALRNLSRD--IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHT 635 (717)
T ss_pred -----------------------hHHHHHHHHHhhhccC--chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHh
Confidence 5555566666666553 2234466678999999999865 35888999999
Q ss_pred HHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC-CHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHH
Q 004225 656 ISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA-DPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKK 734 (767)
Q Consensus 656 L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 734 (767)
|.|++.. +...++.+.+.+.++.|+-+.++. ++...++|...+..|....+ +...+++.|+-+.
T Consensus 636 l~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e--------------Lh~~~kk~g~~q~ 700 (717)
T KOG1048|consen 636 LNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE--------------LHFKLKKKGFKQQ 700 (717)
T ss_pred HHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH--------------HhhhHhhhhhHHH
Confidence 9999987 789999999999999999998864 67899999999999986433 5556666666555
Q ss_pred HH
Q 004225 735 IE 736 (767)
Q Consensus 735 l~ 736 (767)
.+
T Consensus 701 ~F 702 (717)
T KOG1048|consen 701 DF 702 (717)
T ss_pred HH
Confidence 44
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.62 E-value=1.1e-12 Score=142.08 Aligned_cols=315 Identities=19% Similarity=0.204 Sum_probs=249.2
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc
Q 004225 401 ARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSE 479 (767)
Q Consensus 401 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 479 (767)
+.++..+++.+ .+....++.+|..+.. .....+ ..+..+.|...|.++++.+|..+++.+++++.++....+.+.+.
T Consensus 41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 41 PVLFDCLNTSN-REQVELICDILKRLLSALSPDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHHhhcC-hHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 33788888777 7777888899999988 322222 45678899999999999999999999999998887777888889
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHH
Q 004225 480 KALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQA 559 (767)
Q Consensus 480 g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 559 (767)
++++.++..+ .+++..+...|+.+|.+++...+........+.++.|..++...+..+|..+..++.+++..+++....
T Consensus 119 ~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 119 ELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred cHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999 899999999999999999988766566666777999999999888889999999999999999999998
Q ss_pred HHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHH
Q 004225 560 VIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVD 639 (767)
Q Consensus 560 ~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ 639 (767)
+.++|+++.++..++++|. -++..|+.++..++. .+...+++.+.|+++.+.+
T Consensus 198 ~~~sgll~~ll~eL~~dDi--------------------------Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~ 250 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDI--------------------------LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSN 250 (503)
T ss_pred HHhccHHHHHHHHhcCccH--------------------------HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHH
Confidence 9999999999999999877 456666677777777 5778889999999999999
Q ss_pred HHhcCCch------hHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccC
Q 004225 640 LLQNAEFF------TKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTG 713 (767)
Q Consensus 640 ll~~~~~~------v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~ 713 (767)
++...+.+ ..-......++++.. ++....... ..++..+.+++.+.|+..+..|+.+++.+....+..
T Consensus 251 ~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~---- 324 (503)
T PF10508_consen 251 LLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK---- 324 (503)
T ss_pred HHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH----
Confidence 99865332 222333566777775 344332211 346778888889999999999999999998644332
Q ss_pred CccccccHHHHHH-Hhh-----chHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 004225 714 TANRYFNHYARLV-EAA-----EGFKKIEDLKRHDSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 714 ~~~~~~~~~~~~l-~~~-----g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 761 (767)
..+ ... ..+..+.....+...+++-++.+++..+|...
T Consensus 325 ----------~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 325 ----------QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG 368 (503)
T ss_pred ----------HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence 222 111 23555556667778889999999999997544
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.62 E-value=1e-12 Score=142.33 Aligned_cols=356 Identities=18% Similarity=0.184 Sum_probs=267.6
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc-CC--ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHH
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL-LP--PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVV 434 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~ 434 (767)
..+.+...|.++++.++..+++.+++++ .. ....+.+.++++.++.++.+++ ..+...|+.+|.+++. ...+.+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCCchhHHHH
Confidence 3677888999999999999999999998 22 2455668899999999999999 8999999999999999 556677
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCC
Q 004225 435 IDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPE 514 (767)
Q Consensus 435 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 514 (767)
++.+.++.|..++...+..+|.++..++.+++..+++....+.+.|+++.+++.+ +++|.-++.+|+.++..++.....
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcChhH
Confidence 7888899999999888999999999999999999999999999999999999999 778899999999999999997677
Q ss_pred CCccchhchHHHHHHHhcCCCHH------HHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHH
Q 004225 515 PPFDQVRPALPALAQLVHSNDND------VLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLW 588 (767)
Q Consensus 515 ~~~~~~~~~i~~L~~ll~~~~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~ 588 (767)
.......|+++.|..++.+.+.+ ..-..+...++++...+....... ..++..+...+.+.|. ..
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~--~~------ 306 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDP--TI------ 306 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCCh--hH------
Confidence 78888899999999999744321 223344566777765433332111 2356667777788887 44
Q ss_pred HHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHH-HHc-----CCHHHHHHHHhcCCchhHHHHHHHHHHhhcC
Q 004225 589 TVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVV-IDA-----GVIGPLVDLLQNAEFFTKKEAARAISNAISG 662 (767)
Q Consensus 589 ~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~-~~~-----~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~ 662 (767)
+..|..++|.++. +.+..+.+ ... .++..+.....++..++|..+..+++++...
T Consensus 307 ------------------~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 307 ------------------REVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred ------------------HHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 4444455554443 23444434 222 1455566666677889999999999999654
Q ss_pred CCH---HHH----HHHH---HcCChH-HHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhch
Q 004225 663 GTH---EQI----KYLV---RKGCIK-PLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEG 731 (767)
Q Consensus 663 ~~~---~~~----~~l~---~~~~i~-~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 731 (767)
... +.+ .... ..+... .+..+++.+=+++|.++...+..++..... ...+....|+
T Consensus 368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg-------------~~~i~~~~gf 434 (503)
T PF10508_consen 368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG-------------QREICSSPGF 434 (503)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-------------HHHHHhCccH
Confidence 332 111 1111 224444 778888888899999999999999975432 3456677788
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhc
Q 004225 732 FKKIEDLKRHDSNGICEKAVKILEIYW 758 (767)
Q Consensus 732 ~~~l~~l~~~~~~~v~~~a~~~l~~~~ 758 (767)
++.+..-....+.+.++.=.+++.++.
T Consensus 435 ie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 435 IEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 888877777777777776666666655
No 18
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.6e-13 Score=134.04 Aligned_cols=361 Identities=17% Similarity=0.113 Sum_probs=269.1
Q ss_pred CHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhh
Q 004225 372 DSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLL 447 (767)
Q Consensus 372 ~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL 447 (767)
.......|...|.+++ -..-..+.+..++..|++.|+.++ .+.-......|.+++- +++..+.+.|++..|+++.
T Consensus 276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klf 354 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLF 354 (791)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhc
Confidence 3445566777788888 333456778899999999999998 8888999999999988 8999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHH
Q 004225 448 SSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPAL 527 (767)
Q Consensus 448 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L 527 (767)
....++++...+..+.|++.++. .|..+++.|.+|.+..++. + ..-...|+..+..++.++..........+++.+
T Consensus 355 p~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~-~--d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~l 430 (791)
T KOG1222|consen 355 PIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLD-S--DTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLL 430 (791)
T ss_pred CCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhC-C--cccchhhhhhhhhhccCcHHHHHHHHHHHHHHH
Confidence 99999999999999999998755 6677889999999999993 2 223445788889999888777888888999999
Q ss_pred HHHh-cCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHH-hcCCCCCCcccchHHHHHhhhhccCCc-ceeeh
Q 004225 528 AQLV-HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKL-LLHPLPFPFGLTPPLWTVRYIVKGDGF-LTQCT 604 (767)
Q Consensus 528 ~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l 604 (767)
+..+ ...+.++-.+.+....|+|.+.. +.+.+++..++..+++. ++..|. --++.+.|+++++.. +..++
T Consensus 431 mk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~------lLmK~vRniSqHeg~tqn~Fi 503 (791)
T KOG1222|consen 431 MKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL------LLMKVVRNISQHEGATQNMFI 503 (791)
T ss_pred HHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch------HHHHHHHHhhhccchHHHHHH
Confidence 8655 45667777777766677775542 23334443344333332 222222 123334444433321 11111
Q ss_pred ----------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--CchhHHHHHHHHHHhhcCCCHH
Q 004225 605 ----------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA--EFFTKKEAARAISNAISGGTHE 666 (767)
Q Consensus 605 ----------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~ 666 (767)
+...+++.+++|+...+.+..+.+.+.+.+|.+-..|+.+ ..+++-+.+.+++.++.. ..
T Consensus 504 dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d--~~ 581 (791)
T KOG1222|consen 504 DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD--LD 581 (791)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh--hH
Confidence 5667888999999987777777788889999999999865 457888888888988884 56
Q ss_pred HHHHHHHcCChHHHHhhhcC--CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCCh
Q 004225 667 QIKYLVRKGCIKPLCDLLLY--ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSN 744 (767)
Q Consensus 667 ~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~ 744 (767)
.+.-+..+++++.++++++. .|.+.+.+.+.+...+...... ..-++.+...-..+..++++.|.
T Consensus 582 cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~~miket~~~AylIDLMHDkN~ 648 (791)
T KOG1222|consen 582 CARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RRLMIKETALGAYLIDLMHDKNA 648 (791)
T ss_pred HHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HHHHHhhccchHHHHHHHhcccH
Confidence 66667778999999999985 5778889999999999876433 23455666677788999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 004225 745 GICEKAVKILEIYWS 759 (767)
Q Consensus 745 ~v~~~a~~~l~~~~~ 759 (767)
++++.+..++.-+-.
T Consensus 649 eiRkVCDn~LdIiae 663 (791)
T KOG1222|consen 649 EIRKVCDNALDIIAE 663 (791)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888777765533
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.6e-13 Score=146.49 Aligned_cols=384 Identities=16% Similarity=0.139 Sum_probs=278.8
Q ss_pred HHHhhcCHHHHHhhhc-CCCHHHHHHHHHHHHHhc---CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-
Q 004225 354 TIQKLVSLPGMLAGVW-SDDSGLQLEATTWFRKLL---LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS- 428 (767)
Q Consensus 354 ~~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~- 428 (767)
.+.....+|.+...+. +.+++++.-|+-.+|+++ .+....=.++.+-..++..+.++..+.+|..-+.++..+++
T Consensus 31 ~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~ 110 (1075)
T KOG2171|consen 31 LAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARN 110 (1075)
T ss_pred hhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 3444446788888876 789999999999999999 22233334455667788878777779999999999999998
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhh
Q 004225 429 ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRF 508 (767)
Q Consensus 429 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 508 (767)
.... .-.++++.|.+..+++++..|+.|..+|.++.......-.-.++ ...+.+.+.+ .+++..+|..++.++..+
T Consensus 111 ~l~e--~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~-~l~~lf~q~~-~d~s~~vr~~a~rA~~a~ 186 (1075)
T KOG2171|consen 111 DLPE--KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD-DLLRLFSQTM-TDPSSPVRVAAVRALGAF 186 (1075)
T ss_pred cccc--chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH-HHHHHHHHhc-cCCcchHHHHHHHHHHHH
Confidence 2222 33467788888889999999999999999998654432111100 1334444555 555555999999999998
Q ss_pred cCCCC--CCCccchhchHHHHHHHh----cCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcc
Q 004225 509 CQGKP--EPPFDQVRPALPALAQLV----HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFG 582 (767)
Q Consensus 509 ~~~~~--~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v 582 (767)
+...+ ..........+|.++..+ +.+|.+....++.++..+....+........ .++....++..+.+..+.+
T Consensus 187 ~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~ 265 (1075)
T KOG2171|consen 187 AEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSI 265 (1075)
T ss_pred HHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHH
Confidence 87764 222333445666555554 4667777788888888888877665554433 4666677777776655578
Q ss_pred cchHHHHHhhhhccCCcceeeh----------------------------------------------------------
Q 004225 583 LTPPLWTVRYIVKGDGFLTQCT---------------------------------------------------------- 604 (767)
Q Consensus 583 ~~~a~~~L~~l~~~~~~~~~~l---------------------------------------------------------- 604 (767)
|..|+.++..++...+...+..
T Consensus 266 R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v 345 (1075)
T KOG2171|consen 266 RHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV 345 (1075)
T ss_pred HHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe
Confidence 8888888777765422111100
Q ss_pred -----------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHH
Q 004225 605 -----------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ 667 (767)
Q Consensus 605 -----------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 667 (767)
..|..|+.+++.++.|+.+.....+. .+++.+++.++++++.||..|+.+++.++.+..++.
T Consensus 346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 77899999999999999988887655 489999999999999999999999999999865554
Q ss_pred HHHHHHcCChHHHHhhhcC-CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHH-HHHHHhcCCChH
Q 004225 668 IKYLVRKGCIKPLCDLLLY-ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFK-KIEDLKRHDSNG 745 (767)
Q Consensus 668 ~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~-~l~~l~~~~~~~ 745 (767)
.+ -.+..+.+.|+..+.+ .++.++..|..|+-|+....... ...+|-..+ ++ .+..+.++..+.
T Consensus 425 qk-~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~--------~l~pYLd~l-----m~~~l~~L~~~~~~~ 490 (1075)
T KOG2171|consen 425 QK-KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS--------ILEPYLDGL-----MEKKLLLLLQSSKPY 490 (1075)
T ss_pred HH-HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH--------HHHHHHHHH-----HHHHHHHHhcCCchh
Confidence 44 4566688889998887 57799999999999999876543 234455555 45 677778889999
Q ss_pred HHHHHHHHHHHh
Q 004225 746 ICEKAVKILEIY 757 (767)
Q Consensus 746 v~~~a~~~l~~~ 757 (767)
|++.|...|...
T Consensus 491 v~e~vvtaIasv 502 (1075)
T KOG2171|consen 491 VQEQAVTAIASV 502 (1075)
T ss_pred HHHHHHHHHHHH
Confidence 999999888643
No 20
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.58 E-value=1e-14 Score=174.75 Aligned_cols=225 Identities=15% Similarity=0.103 Sum_probs=101.4
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|+++++.--..+ |...+..+.+|++|+++++.-...+ ....+++|++|+++++.-...+|.
T Consensus 91 ~l~~L~~L~Ls~n~~~~~i-p~~~~~~l~~L~~L~Ls~n~l~~~~-----------p~~~l~~L~~L~Ls~n~~~~~~p~ 158 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPI-PDDIFTTSSSLRYLNLSNNNFTGSI-----------PRGSIPNLETLDLSNNMLSGEIPN 158 (968)
T ss_pred CCCCCCEEECCCCccCCcC-ChHHhccCCCCCEEECcCCcccccc-----------CccccCCCCEEECcCCcccccCCh
Confidence 3566666666665421223 3333345666666666665421111 012355666666665532222222
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeec
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIG 163 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (767)
. ...+++|+.|++++|..... .+..+ ..+++|++|++++|......+ ..+.++++|+.|.++
T Consensus 159 ~---~~~l~~L~~L~L~~n~l~~~-~p~~~--~~l~~L~~L~L~~n~l~~~~p------------~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 159 D---IGSFSSLKVLDLGGNVLVGK-IPNSL--TNLTSLEFLTLASNQLVGQIP------------RELGQMKSLKWIYLG 220 (968)
T ss_pred H---HhcCCCCCEEECccCccccc-CChhh--hhCcCCCeeeccCCCCcCcCC------------hHHcCcCCccEEECc
Confidence 1 34456666666666543222 11112 245666666666554322211 223445555555555
Q ss_pred CCCCC--CC--cccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchh
Q 004225 164 GYSAS--LP--YEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKI 239 (767)
Q Consensus 164 ~~~~~--~~--~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 239 (767)
++... .+ +..+.+|+.|.+.++.-... .+.....+++|++|+++++.....++.....+++|+.|++++|.....
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 54321 11 23345555555555432211 122233345555555555433222222334455555555555533222
Q ss_pred hcCchhhhccccCcEEeEcccc
Q 004225 240 VLTSLIAKTLVRLRYMKIKSCD 261 (767)
Q Consensus 240 ~~~~~~~~~l~~L~~L~i~~c~ 261 (767)
.+ .. +.++++|++|++.+|.
T Consensus 300 ~p-~~-~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 300 IP-EL-VIQLQNLEILHLFSNN 319 (968)
T ss_pred CC-hh-HcCCCCCcEEECCCCc
Confidence 21 11 2345555555555544
No 21
>PRK09687 putative lyase; Provisional
Probab=99.57 E-value=6.1e-13 Score=131.69 Aligned_cols=255 Identities=15% Similarity=0.134 Sum_probs=152.7
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLS 478 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 478 (767)
-++.|++.|.+++ ..++..|+++|..+-. ..+++.+..+++++++.+|..|+++|+.+...... .
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~ 88 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------Q 88 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------h
Confidence 3566666776666 6777777777765532 23455666667777777777777777776532111 1
Q ss_pred cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHH
Q 004225 479 EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQ 558 (767)
Q Consensus 479 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 558 (767)
..+++.|..++.+++++.|+..++.+|+++....... ...+++.+...+.+++..|+..++++|+.+...
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~------ 158 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE------ 158 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH------
Confidence 1144555555436667777777777777775432111 223455555666667777777777777654321
Q ss_pred HHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHH
Q 004225 559 AVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLV 638 (767)
Q Consensus 559 ~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~ 638 (767)
..++.|+.++.++++ .++..|+++|+.+..+++. +++.|+
T Consensus 159 -----~ai~~L~~~L~d~~~--------------------------~VR~~A~~aLg~~~~~~~~---------~~~~L~ 198 (280)
T PRK09687 159 -----AAIPLLINLLKDPNG--------------------------DVRNWAAFALNSNKYDNPD---------IREAFV 198 (280)
T ss_pred -----HHHHHHHHHhcCCCH--------------------------HHHHHHHHHHhcCCCCCHH---------HHHHHH
Confidence 245667777777776 5666666666665333222 455677
Q ss_pred HHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCcccc
Q 004225 639 DLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRY 718 (767)
Q Consensus 639 ~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~ 718 (767)
..+.+.+..||..|+++|+.+-. + .+++.|+..+++++ ++..++.||..+-.
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~~~---~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~-------------- 250 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALRKD---K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD-------------- 250 (280)
T ss_pred HHhcCCChHHHHHHHHHHHccCC---h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC--------------
Confidence 77777777777777777776432 2 25666666776654 44556666555442
Q ss_pred ccHHHHHHHhhchHHHHHHHhc-CCChHHHHHHHHHHHH
Q 004225 719 FNHYARLVEAAEGFKKIEDLKR-HDSNGICEKAVKILEI 756 (767)
Q Consensus 719 ~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l~~ 756 (767)
.-+++.|.++++ ++++.|+.+|.+.|.+
T Consensus 251 ----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 ----------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ----------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 112455566664 6677777777777653
No 22
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=1.4e-14 Score=173.53 Aligned_cols=314 Identities=13% Similarity=0.065 Sum_probs=138.2
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|+++++.....+ |. ..+++|++|+++++.-...+ +..+..+++|++|+++++.-....|.
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~-p~---~~l~~L~~L~Ls~n~~~~~~---------p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSI-PR---GSIPNLETLDLSNNMLSGEI---------PNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred cCCCCCEEECcCCcccccc-Cc---cccCCCCEEECcCCcccccC---------ChHHhcCCCCCEEECccCcccccCCh
Confidence 5677888888876532223 22 24667777777766421111 23344455666666655432222222
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccC-C-----------CcchhcchhhHh
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHL-G-----------DERTILSLGDFL 151 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~-----------~~~~~~~~~~~~ 151 (767)
. ...+++|+.|++++|..... .+..+ ..+++|++|++++|......+.. . ...-.......+
T Consensus 183 ~---~~~l~~L~~L~L~~n~l~~~-~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 183 S---LTNLTSLEFLTLASNQLVGQ-IPREL--GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred h---hhhCcCCCeeeccCCCCcCc-CChHH--cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 1 23455555555555532211 11111 13445555555544332211100 0 000000111234
Q ss_pred hhccccceeeecCCCCC--C--CcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCC
Q 004225 152 QRLHTMKVLQIGGYSAS--L--PYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLT 227 (767)
Q Consensus 152 ~~l~~L~~L~l~~~~~~--~--~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~ 227 (767)
.++++|+.|.++++... . .+..+..|+.|.+.++.- ....+.....+++|++|++.++......+.....+++|+
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee-ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence 45555666655554321 1 122345555565555532 211122223455666666665544333333345566666
Q ss_pred EEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccc----------------ccccccccccccceEeecC
Q 004225 228 NMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDV----------------VAKDEVITFRELKELKLVD 291 (767)
Q Consensus 228 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~----------------~~~~~~~~~~~L~~L~l~~ 291 (767)
.|++++|.....++. . ++.+++|+.|++++|.-...++..... ..+.....+++|+.|++.+
T Consensus 336 ~L~L~~n~l~~~~p~-~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 336 VLQLWSNKFSGEIPK-N-LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred EEECcCCCCcCcCCh-H-HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 666666654333322 1 344566666666655422222221111 0000001144555555554
Q ss_pred CCCcccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhccc
Q 004225 292 LERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHG 341 (767)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~ 341 (767)
+.--..++. ....+++|+.|++.++.-....|......++|+.+++++
T Consensus 414 n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 414 NSFSGELPS--EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CEeeeECCh--hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 432222221 123456666666666643333333333445666666665
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=6.8e-13 Score=125.50 Aligned_cols=277 Identities=14% Similarity=0.155 Sum_probs=228.9
Q ss_pred CHHHHHhhh--cCCCHHHHHHHHHHHHHhc---CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh------
Q 004225 360 SLPGMLAGV--WSDDSGLQLEATTWFRKLL---LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS------ 428 (767)
Q Consensus 360 ~i~~l~~~l--~s~~~~~~~~a~~~L~~l~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~------ 428 (767)
+..-++..| +.++.++-...+..++.-+ .-+++.+++.++.+.+.+.+......++.+++.|+++.+..
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV 225 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRV 225 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceee
Confidence 344444444 4677788888888888877 45678889999999999877765535688889999999887
Q ss_pred ------hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChH---HH
Q 004225 429 ------ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPS---ML 498 (767)
Q Consensus 429 ------~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~---~~ 498 (767)
.+.+.+++.|++..|++.++. .+|.+-..+..+|+.++.. .+..+.+.+.|++..++.++.++.+.. ..
T Consensus 226 ~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 226 VFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred ecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 456778889999999999987 6788999999999999966 556678999999999999995444444 55
Q ss_pred HHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc--CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCC
Q 004225 499 RNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH--SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHP 576 (767)
Q Consensus 499 ~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 576 (767)
+.|+..|..++..+.....+...|+.+.++.++. .+|+.+...++.+++.+|-..++....+++.|+-...++.|+..
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 7899999999999888888889999999998875 67799999999999999988888888899999999999999876
Q ss_pred CCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHH
Q 004225 577 LPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAI 656 (767)
Q Consensus 577 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 656 (767)
.. .- .++++|||++.|++..+.+.+..++.. +++.|+...+..++.....|-.+|
T Consensus 385 P~--~a----------------------~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaAL 439 (461)
T KOG4199|consen 385 PV--AA----------------------QVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAAL 439 (461)
T ss_pred cH--HH----------------------HHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHH
Confidence 54 10 688999999999999888888777664 678899999999999999998999
Q ss_pred HHhhcC
Q 004225 657 SNAISG 662 (767)
Q Consensus 657 ~nl~~~ 662 (767)
..+..+
T Consensus 440 RDLGc~ 445 (461)
T KOG4199|consen 440 RDLGCD 445 (461)
T ss_pred HhcCcc
Confidence 888765
No 24
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.56 E-value=3.8e-12 Score=131.48 Aligned_cols=380 Identities=16% Similarity=0.086 Sum_probs=269.1
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhc---CCChHHHHhcCchHHHHhhccCCC-CHHHHHHHHHHHHHHHh---hhhHHHHhC
Q 004225 365 LAGVWSDDSGLQLEATTWFRKLL---LPPSEKVIQSGVVARFVEFLTRED-NPQLQLEAARALTNIAS---ENTNVVIDG 437 (767)
Q Consensus 365 ~~~l~s~~~~~~~~a~~~L~~l~---~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~---~~~~~~~~~ 437 (767)
+..+.+.+|+....|.....+++ ..+...+++.|.++.+..++..++ .++.+.+.+.++...+. .....+.+.
T Consensus 15 l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~ 94 (678)
T KOG1293|consen 15 LYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRI 94 (678)
T ss_pred HHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHH
Confidence 44556778888889999999888 555667899999999999998765 24555555556665555 556778889
Q ss_pred CChHHHHHhhCCCC-HHHHHHHHHHHHHHhcCCchhH--HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCC
Q 004225 438 GAVPIFVKLLSSPS-DDVREKAVWALGNIARSSPRDR--DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPE 514 (767)
Q Consensus 438 ~~l~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 514 (767)
+.++.+.++|.+.| ..+++..+.++.++...++..- ........+..+..++ ..+.....+.-+....+++.....
T Consensus 95 ~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~h 173 (678)
T KOG1293|consen 95 IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKDH 173 (678)
T ss_pred hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccchh
Confidence 99999999999988 8899999999999986554321 2222223445554444 334555555566666666666544
Q ss_pred CCccchhchHHHHHHHhcCCCHHHHHHHHHHHH---hhccCChhHHH----HHHhcCcHH--HHHHHhcCCCCCCcccch
Q 004225 515 PPFDQVRPALPALAQLVHSNDNDVLRYACEALS---CLSDGTNDKIQ----AVIEADVCP--RLVKLLLHPLPFPFGLTP 585 (767)
Q Consensus 515 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~---~l~~~~~~~~~----~~~~~~~~~--~L~~lL~~~~~~~~v~~~ 585 (767)
.......++.+.+.-++.......|.+|+.+++ ++..+++.... ...+.++.+ .+-+++++++. .-+..
T Consensus 174 q~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~--s~~l~ 251 (678)
T KOG1293|consen 174 QLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDF--SERLR 251 (678)
T ss_pred hheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCc--cHHHH
Confidence 455556677777777777778889999999999 77777664333 334456666 56677788877 77788
Q ss_pred HHHHHhhhhccCCcceeeh-------------------------------------------------------------
Q 004225 586 PLWTVRYIVKGDGFLTQCT------------------------------------------------------------- 604 (767)
Q Consensus 586 a~~~L~~l~~~~~~~~~~l------------------------------------------------------------- 604 (767)
++.++.++...+.+.....
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence 8888877765441110000
Q ss_pred ------------------------------------------------------------hhhHHHHHHHhhhccCCHHH
Q 004225 605 ------------------------------------------------------------GIAKEACRTISNITAGNREQ 624 (767)
Q Consensus 605 ------------------------------------------------------------~v~~~a~~~l~nl~~~~~~~ 624 (767)
..+.+||-++.+.+..-...
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443322222
Q ss_pred HHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 625 IQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 625 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
+..+-...++.+|++++..++..|+..+..+++|++...+ +....++..|+++.+.+++.+.++.++..++|+|.+++.
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 2222245688999999999999999999999999998754 455678999999999999999999999999999999998
Q ss_pred hhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 004225 705 VGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSC 760 (767)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 760 (767)
..+...+ ...++++. ...+..+.++++..|++.+.++++++-.+
T Consensus 491 ~~de~~k-------~~~~~ki~-----a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 491 NCDEEEK-------FQLLAKIP-----ANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred cchHHHH-------HHHHHHhh-----HHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 6554432 12223322 45677888999999999999999998766
No 25
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=9.4e-13 Score=130.36 Aligned_cols=254 Identities=19% Similarity=0.155 Sum_probs=199.0
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
.++.+++.|.+++..++..|+..|..+-. ..+++.+..++++++ +.+|..|+++|+.+-..... ...+
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---~~~a 91 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---QDNV 91 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---hHHH
Confidence 68889999999999999999999988542 334677788888888 99999999999998641110 1235
Q ss_pred hHHHHHh-hCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 440 VPIFVKL-LSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 440 l~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
++.|..+ ++++++.|+..|+.+|+++....... ...++..+...+ .+++..+|..++++|+.+...
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~~------- 158 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVINDE------- 158 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCCH-------
Confidence 6788876 67799999999999999997543221 112455666777 778999999999999876533
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
.+++.|+.+++++++.++..++.+|+.+....+ .+++.|+..+.+.+.
T Consensus 159 ---~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~-------------------- 206 (280)
T PRK09687 159 ---AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNE-------------------- 206 (280)
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCCh--------------------
Confidence 489999999999999999999999999943332 255778899999998
Q ss_pred cceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 004225 599 FLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIK 678 (767)
Q Consensus 599 ~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~ 678 (767)
.++..|+++|+.+-.. .+++.|++.+++++ ++..|+.+|+++... + +++
T Consensus 207 ------~VR~~A~~aLg~~~~~-----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~---~---------a~p 255 (280)
T PRK09687 207 ------EIRIEAIIGLALRKDK-----------RVLSVLIKELKKGT--VGDLIIEAAGELGDK---T---------LLP 255 (280)
T ss_pred ------HHHHHHHHHHHccCCh-----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH---h---------HHH
Confidence 7777888887765331 47899999998766 778899999988752 2 678
Q ss_pred HHHhhhc-CCCHHHHHHHHHHHHH
Q 004225 679 PLCDLLL-YADPEIVTICLKGLEN 701 (767)
Q Consensus 679 ~L~~ll~-~~~~~v~~~al~aL~~ 701 (767)
.|..+++ ++|+.++..|.++|..
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHhc
Confidence 8888887 7899999999999864
No 26
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=6.5e-12 Score=118.97 Aligned_cols=307 Identities=13% Similarity=0.138 Sum_probs=243.5
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCC-CCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHH
Q 004225 368 VWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRE-DNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIF 443 (767)
Q Consensus 368 l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L 443 (767)
..+++..+-.+++.+|..+..... .+.+..++..++++|... ++.++.......+..-+. .+++.+++.++++.+
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qp-dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li 194 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQP-DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELI 194 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCc-chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 457788888999999988883222 235566778888877643 236677777777776666 578888999999999
Q ss_pred HHhhCC-CCHHHHHHHHHHHHHHhcCCc---------hhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC
Q 004225 444 VKLLSS-PSDDVREKAVWALGNIARSSP---------RDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP 513 (767)
Q Consensus 444 ~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 513 (767)
.+.|.. ...++...+.|++.-+..+++ ...+.+...|+...|++.+...-++++...++.+|..++..++
T Consensus 195 ~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E 274 (461)
T KOG4199|consen 195 LQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE 274 (461)
T ss_pred HHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH
Confidence 987766 444678889999999886543 2456788889999999999777789999999999999999988
Q ss_pred CCCccchhchHHHHHHHhcCC-CHH---HHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCC--CCCCcccchHH
Q 004225 514 EPPFDQVRPALPALAQLVHSN-DND---VLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHP--LPFPFGLTPPL 587 (767)
Q Consensus 514 ~~~~~~~~~~i~~L~~ll~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~~~v~~~a~ 587 (767)
.++.+...|++..+++++.+. +.. ..+.++..|+.++..+ .....+++.|+.+.++.++... ++
T Consensus 275 ~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p--------- 344 (461)
T KOG4199|consen 275 ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDP--------- 344 (461)
T ss_pred HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCCh---------
Confidence 899999999999999999863 333 4467788888887654 5666788999999999988643 33
Q ss_pred HHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--CchhHHHHHHHHHHhhcCCCH
Q 004225 588 WTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA--EFFTKKEAARAISNAISGGTH 665 (767)
Q Consensus 588 ~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~ 665 (767)
.+..+++.+++-++-..++....+++.|+-...++.|+.. ...++++|||++.|++.. +.
T Consensus 345 -----------------~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~ 406 (461)
T KOG4199|consen 345 -----------------LVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SA 406 (461)
T ss_pred -----------------HHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hh
Confidence 6777888888888888899999999999999999999854 458999999999999987 56
Q ss_pred HHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 666 EQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 666 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
++...++.. +++.|+..-+..++.+...|-.||..+-.
T Consensus 407 ~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 407 ENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred hccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 777766665 58888888888888888888888877654
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.52 E-value=1.5e-12 Score=127.26 Aligned_cols=348 Identities=16% Similarity=0.111 Sum_probs=250.6
Q ss_pred CCHHHHHHHHHHHHHhc-CCC-----hHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChH
Q 004225 371 DDSGLQLEATTWFRKLL-LPP-----SEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVP 441 (767)
Q Consensus 371 ~~~~~~~~a~~~L~~l~-~~~-----~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~ 441 (767)
.+..+...+...+...+ ++. +..-+.++.++.|.+...+++ .++..+..++|+|++. +.|..+.+.|+-.
T Consensus 54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 34445555555555555 222 222355678889999988887 8999999999999999 8899999999988
Q ss_pred HHHHhhCC----CC---HHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCC-
Q 004225 442 IFVKLLSS----PS---DDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGK- 512 (767)
Q Consensus 442 ~L~~lL~~----~~---~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~- 512 (767)
.+++.|+. ++ .+...-+...|.|..-++.+.+..+++.|+++.+...+. ...+....+.++....|+..-.
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 88888865 22 355566778899999999999999999999999988874 4556666777777777665432
Q ss_pred C-CCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHH
Q 004225 513 P-EPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 513 ~-~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L 590 (767)
+ ..++.......-.+++++. ...+++.+.+..++...++++..... +.+.|.++.++.+++.-... .-...+.
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~-la~~gl~e~~~~lv~~~k~~-t~k~d~~--- 287 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLS-LAQNGLLEDSIDLVRNMKDF-TKKTDML--- 287 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeee-hhhcchHHHHHHHHHhcccc-cchHHHH---
Confidence 1 1233344455556666665 34566778888888888877654433 66778999999998873220 1111111
Q ss_pred hhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcC-CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHH
Q 004225 591 RYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAG-VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIK 669 (767)
Q Consensus 591 ~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 669 (767)
...+.++....-+..| .+..+++...+ ++..+..++.+.+.+....+..+++|+++. .+.+-
T Consensus 288 --------------~l~k~~~el~vllltG-DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~--D~~ci 350 (604)
T KOG4500|consen 288 --------------NLFKRIAELDVLLLTG-DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR--DDICI 350 (604)
T ss_pred --------------HHHHhhhhHhhhhhcC-chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc--chHHH
Confidence 2233344444444445 44556666666 899999999999999999999999999995 57778
Q ss_pred HHHHcCChHHHHhhhc-----CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCCh
Q 004225 670 YLVRKGCIKPLCDLLL-----YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSN 744 (767)
Q Consensus 670 ~l~~~~~i~~L~~ll~-----~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~ 744 (767)
++++.|++..|++++. ++|.+++.+++.||.|++....+ +..+..+|..+.+...+....|
T Consensus 351 ~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n--------------ka~~~~aGvteaIL~~lk~~~p 416 (604)
T KOG4500|consen 351 QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN--------------KAHFAPAGVTEAILLQLKLASP 416 (604)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc--------------hhhccccchHHHHHHHHHhcCC
Confidence 8899999999999986 36778999999999999964433 4456688888888888877777
Q ss_pred HHHHHHHHHHH
Q 004225 745 GICEKAVKILE 755 (767)
Q Consensus 745 ~v~~~a~~~l~ 755 (767)
.|..+-...++
T Consensus 417 pv~fkllgTlr 427 (604)
T KOG4500|consen 417 PVTFKLLGTLR 427 (604)
T ss_pred cchHHHHHHHH
Confidence 76655555554
No 28
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.7e-11 Score=135.14 Aligned_cols=354 Identities=19% Similarity=0.230 Sum_probs=248.8
Q ss_pred HHHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-
Q 004225 354 TIQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS- 428 (767)
Q Consensus 354 ~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~- 428 (767)
.|+++ ++-++...+|+++..|..|+..|..+. +.....+ ..+.+.+.+.+.+++.+ +|..|++++..++.
T Consensus 115 ~WPel--l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~ 189 (1075)
T KOG2171|consen 115 KWPEL--LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEY 189 (1075)
T ss_pred chHHH--HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHH
Confidence 56666 888888899999999999999999887 1122111 13467788888888855 99999999999988
Q ss_pred -h-hhHHH-HhCCChHHHHHhhC----CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cCCChHHHHH
Q 004225 429 -E-NTNVV-IDGGAVPIFVKLLS----SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KHAKPSMLRN 500 (767)
Q Consensus 429 -~-~~~~~-~~~~~l~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~ 500 (767)
+ ++... .-...+|.++..+. .+|.+....+..+|..++...+....-.+. .+++..+.+.. ++-+..+|..
T Consensus 190 ~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ 268 (1075)
T KOG2171|consen 190 LENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHL 268 (1075)
T ss_pred hccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHH
Confidence 2 12211 12245676666554 467777788888888888766654332221 14444444442 3345667777
Q ss_pred HHHHHHhhcCCCCCC-------------------------------------C---------------------ccchhc
Q 004225 501 ATKTLSRFCQGKPEP-------------------------------------P---------------------FDQVRP 522 (767)
Q Consensus 501 ~~~~L~~l~~~~~~~-------------------------------------~---------------------~~~~~~ 522 (767)
|+.++..++...|.. . ......
T Consensus 269 ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~ 348 (1075)
T KOG2171|consen 269 ALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPP 348 (1075)
T ss_pred HHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHH
Confidence 776666555431100 0 000134
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCccee
Q 004225 523 ALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQ 602 (767)
Q Consensus 523 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 602 (767)
+++.+-.++++.+..-|++++.+++.++++..+......+ .+++.++..++++++
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dphp------------------------ 403 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHP------------------------ 403 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCH------------------------
Confidence 5566667778999999999999999999998877666554 689999999999999
Q ss_pred ehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC-CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HH
Q 004225 603 CTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA-EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIK-PL 680 (767)
Q Consensus 603 ~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~-~L 680 (767)
.||..||.+++.++..-....+.-....+.+.|+..+++. ++.|+.+|+.++-|+...+..+.+...++ +++. .+
T Consensus 404 --rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l 480 (1075)
T KOG2171|consen 404 --RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKL 480 (1075)
T ss_pred --HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHH
Confidence 7777777778877776666666666677888999998866 56999999999999999877776655333 4666 44
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCC-hHHHHHHHHHHH
Q 004225 681 CDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDS-NGICEKAVKILE 755 (767)
Q Consensus 681 ~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~-~~v~~~a~~~l~ 755 (767)
..++.++.+.+++.+..+|...+...+. .+.+|...+ ++.|..++...+ .+.+....+.++
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~---------~F~pY~d~~-----Mp~L~~~L~n~~~~d~r~LrgktmE 542 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADAAQE---------KFIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTME 542 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhh---------hhHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHHH
Confidence 4455678899999999999999987765 455677777 788888876654 555444444443
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=1.1e-12 Score=126.59 Aligned_cols=241 Identities=17% Similarity=0.123 Sum_probs=185.0
Q ss_pred HhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhH
Q 004225 477 LSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDK 556 (767)
Q Consensus 477 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 556 (767)
.+.+.++.++.+|..+.++.+++.++.++++.+..+.....+...|+++.+..++.++++.++..|++++.|++...+..
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 56677899999997788999999999999999888777788888999999999999999999999999999999776543
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHH
Q 004225 557 IQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGP 636 (767)
Q Consensus 557 ~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~ 636 (767)
.. + + ..++.+.+...+.....+++..++++|.|++ ..+ +. +.++ .+.++.
T Consensus 89 ~~-I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt------------------------v~~-~~-~~~l-~~~i~~ 138 (254)
T PF04826_consen 89 EQ-I-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLT------------------------VTN-DY-HHML-ANYIPD 138 (254)
T ss_pred HH-H-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccC------------------------CCc-ch-hhhH-HhhHHH
Confidence 32 3 2 2566666655443221255555555555554 321 11 2233 247899
Q ss_pred HHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC-CHHHHHHHHHHHHHHHHhhhhhhccC--
Q 004225 637 LVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA-DPEIVTICLKGLENILKVGEAEMNTG-- 713 (767)
Q Consensus 637 L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~~~~~~-- 713 (767)
++.++..++..+|..+.++|.|++. ++...+.++..+++..++.+++.. +.++...+++...|+...........
T Consensus 139 ll~LL~~G~~~~k~~vLk~L~nLS~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~ 216 (254)
T PF04826_consen 139 LLSLLSSGSEKTKVQVLKVLVNLSE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQ 216 (254)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhcc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceecc
Confidence 9999999999999999999999999 588899999999999999999875 78899999999999976543332111
Q ss_pred CccccccHHHHHHHhhc-hHHHHHHHhcCCChHHHHHH
Q 004225 714 TANRYFNHYARLVEAAE-GFKKIEDLKRHDSNGICEKA 750 (767)
Q Consensus 714 ~~~~~~~~~~~~l~~~g-~~~~l~~l~~~~~~~v~~~a 750 (767)
... ..+.....+.+.+ ..++|..+..|++++|++++
T Consensus 217 ~~~-~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 217 DDF-SEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred ccC-CchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 011 3445566676666 78999999999999999875
No 30
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.51 E-value=2.1e-12 Score=142.77 Aligned_cols=337 Identities=17% Similarity=0.166 Sum_probs=248.5
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhc-CCC-hHHHHhcCchHHHHhhccCCC--CHHHHHHHHHHHHHHHh---hhhHHHH
Q 004225 363 GMLAGVWSDDSGLQLEATTWFRKLL-LPP-SEKVIQSGVVARFVEFLTRED--NPQLQLEAARALTNIAS---ENTNVVI 435 (767)
Q Consensus 363 ~l~~~l~s~~~~~~~~a~~~L~~l~-~~~-~~~i~~~g~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~---~~~~~~~ 435 (767)
.+..++...|++ .-++.+..+. ++. .-.+...|.++.|++++..++ +.+.+..|-.+|.||.. +....=.
T Consensus 201 sllsml~t~D~e---e~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RR 277 (2195)
T KOG2122|consen 201 SLLSMLGTDDEE---EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRR 277 (2195)
T ss_pred HHhhhcccCCHH---HHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHH
Confidence 444555554443 3344555555 443 556678899999999998654 36788999999999998 2211111
Q ss_pred hCCChHHHH----------HhhCCC-------CHHHHH-HHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-------
Q 004225 436 DGGAVPIFV----------KLLSSP-------SDDVRE-KAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN------- 490 (767)
Q Consensus 436 ~~~~l~~L~----------~lL~~~-------~~~v~~-~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~------- 490 (767)
+..+++.|- .++... ..+-+. .|+.+|-.++.+ +++|+.+-+.|+++.+-+++.
T Consensus 278 E~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhg 356 (2195)
T KOG2122|consen 278 EKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHG 356 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 112222222 222221 122233 567777777755 889999999999999999884
Q ss_pred ----cCCChHHHHHHHHHHHhhcCCCCCC--CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHH-HHhc
Q 004225 491 ----KHAKPSMLRNATKTLSRFCQGKPEP--PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQA-VIEA 563 (767)
Q Consensus 491 ----~~~~~~~~~~~~~~L~~l~~~~~~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~ 563 (767)
+.....+|+.+..+|.||..++..- ......|++..++.-+.+..+++..-...+|.||+-..+.+.+. +.+.
T Consensus 357 p~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~ 436 (2195)
T KOG2122|consen 357 PETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRET 436 (2195)
T ss_pred CCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhh
Confidence 1124579999999999999988332 33455799999999999888899999999999999665554444 4456
Q ss_pred CcHHHHHHHh-cCCCCCCcccchHHHHHhhhhccCCcceeeh-----------------------hhhHHHHHHHhhhcc
Q 004225 564 DVCPRLVKLL-LHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT-----------------------GIAKEACRTISNITA 619 (767)
Q Consensus 564 ~~~~~L~~lL-~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-----------------------~v~~~a~~~l~nl~~ 619 (767)
|-+..|+... +...+ ......+.+|.||+.+.......+ .+.+.|-.+|.|...
T Consensus 437 GsVtaLa~~al~~~kE--sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS 514 (2195)
T KOG2122|consen 437 GSVTALAACALRNKKE--STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS 514 (2195)
T ss_pred hhHHHHHHHHHHhccc--chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh
Confidence 6666666554 44554 677888888999986544333222 666777667666554
Q ss_pred ---CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHH
Q 004225 620 ---GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICL 696 (767)
Q Consensus 620 ---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al 696 (767)
...++++.+.+++.+..|++.|++.+..+..++|.+|+|+... +++.-++|++.|++..|..++++++..+..-+.
T Consensus 515 ~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSa 593 (2195)
T KOG2122|consen 515 LIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSA 593 (2195)
T ss_pred HhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHH
Confidence 6788899999999999999999999999999999999999998 788889999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 004225 697 KGLENILKVG 706 (767)
Q Consensus 697 ~aL~~l~~~~ 706 (767)
.||.|++..-
T Consensus 594 aALrNLln~R 603 (2195)
T KOG2122|consen 594 AALRNLLNFR 603 (2195)
T ss_pred HHHHHHhcCC
Confidence 9999999653
No 31
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=7.6e-11 Score=116.91 Aligned_cols=332 Identities=14% Similarity=0.135 Sum_probs=252.0
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHh
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVID 436 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~ 436 (767)
+.-+++.|..++.+......+.|.++. ..+...+.+.|++..|++++...+ ++.+......+.|++. ..+..++.
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD~glr~KMv~ 384 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFDSGLRPKMVN 384 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccccccccHHHhh
Confidence 666788888888888888999999998 788889999999999999999999 9999999999999999 78899999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCC
Q 004225 437 GGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP 516 (767)
Q Consensus 437 ~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 516 (767)
.|.+|.+..++.++... .-|+..+..++.+ ...+.++....+|+.+.+.+....+.++-...+...-|+|.+.-+.+
T Consensus 385 ~GllP~l~~ll~~d~~~--~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ 461 (791)
T KOG1222|consen 385 GGLLPHLASLLDSDTKH--GIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ 461 (791)
T ss_pred ccchHHHHHHhCCcccc--hhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce
Confidence 99999999999875532 3366677777755 55778888888999999887666666666666666678988876666
Q ss_pred ccchhchHHHHHHH-hcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhc
Q 004225 517 FDQVRPALPALAQL-VHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 517 ~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~ 595 (767)
.+....++..|+.. ++..|.-+ +..+.|++.+.......+++ .+..+...++..+. +.....++.+++|+.-
T Consensus 462 lvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~-E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 462 LVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNS-ESFGLECLGTLANLKV 534 (791)
T ss_pred EEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCch-HHHHHHHHHHHhhccc
Confidence 66666677777643 44555432 34678888887666666665 77778888877654 4678888888999876
Q ss_pred cCCcceeeh--------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--CchhHHHHH
Q 004225 596 GDGFLTQCT--------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA--EFFTKKEAA 653 (767)
Q Consensus 596 ~~~~~~~~l--------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~ 653 (767)
.+-+..+.+ +...+.+-++|..+.. ......+..+++++.++++|+.. +.+......
T Consensus 535 ~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~Qii 613 (791)
T KOG1222|consen 535 TDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQII 613 (791)
T ss_pred CCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHH
Confidence 554444333 4444555555555443 34444566789999999999864 567777778
Q ss_pred HHHHHhhcCCCHHHHHHHHH-cCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 654 RAISNAISGGTHEQIKYLVR-KGCIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 654 ~~L~nl~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
+++..+..+ .-.++.+++ ...-.+|++++++.+.++|+.+-.+|.-+....
T Consensus 614 yVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 614 YVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred HHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 888888876 344455555 566678999999999999999999998888743
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.45 E-value=2.6e-11 Score=141.20 Aligned_cols=274 Identities=16% Similarity=0.174 Sum_probs=211.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
.++.|++.|.++++.++..|+..|..+. ..+.++.|+..+.+++ +.++..|+.+|..+.. ....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~-------~~~~ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGA-AAVRRAAAEGLRELVE-------VLPP 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHh-------ccCc
Confidence 5778899999999999999999999854 2345788889998888 8999999999988753 0122
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
.+.+...|.++|+.+|..|+.+|+.+.... ...++..+ .++++.+|..++.+|..+-.
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~--------- 743 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD--------- 743 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC---------
Confidence 467888888999999999999998875322 23566778 89999999999999997621
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCc
Q 004225 520 VRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGF 599 (767)
Q Consensus 520 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~ 599 (767)
.+.+..++.+++..+|..++.+|..+..... ..++.+..+++++++
T Consensus 744 ----~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~--------------------- 789 (897)
T PRK13800 744 ----VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDP--------------------- 789 (897)
T ss_pred ----cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCH---------------------
Confidence 2346778899999999999999998865432 236778889999988
Q ss_pred ceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH
Q 004225 600 LTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKP 679 (767)
Q Consensus 600 ~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~ 679 (767)
.+|..|+.+|+++.... .+++.+...+.++++.||..|+.+|+.+... ..++.
T Consensus 790 -----~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~ 842 (897)
T PRK13800 790 -----LVRAAALAALAELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPA 842 (897)
T ss_pred -----HHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHH
Confidence 66666666666553321 1335688888999999999999999876532 24588
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHH
Q 004225 680 LCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILE 755 (767)
Q Consensus 680 L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 755 (767)
|..+++++++.||..|+++|..+- ++ ....+.|...+++++++|+..|..+|+
T Consensus 843 L~~~L~D~~~~VR~~A~~aL~~~~--~~---------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 843 LVEALTDPHLDVRKAAVLALTRWP--GD---------------------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhccC--CC---------------------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999999999999999999999861 11 012455677789999999999999886
No 33
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.44 E-value=4e-12 Score=122.62 Aligned_cols=196 Identities=18% Similarity=0.249 Sum_probs=161.0
Q ss_pred HHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCc
Q 004225 393 KVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSP 470 (767)
Q Consensus 393 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 470 (767)
.+++.+-++.|+.+|+..++|.++..|..++.+.+. ..++.+.+.|+++.+..+|.++++.++..|++++.|++...+
T Consensus 7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 346677789999999987669999999999999988 778888899999999999999999999999999999997654
Q ss_pred hhHHHHHhcCCHHHHHHHHcc-CCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 004225 471 RDRDLVLSEKALIPLLAQLNK-HAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCL 549 (767)
Q Consensus 471 ~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 549 (767)
.+..+ + ..+..+++.+.. .-+.+++..++.+|.|++..+..... ..+.+|.++.++..++..++..++++|.|+
T Consensus 87 -n~~~I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~--l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 -NQEQI-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM--LANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred -hHHHH-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh--HHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 44434 2 256777765533 34789999999999999977644333 356899999999999999999999999999
Q ss_pred ccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhc
Q 004225 550 SDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~ 595 (767)
+..+. ..+.++.+++...++.++..... .++...++..+.|+..
T Consensus 162 S~np~-~~~~Ll~~q~~~~~~~Lf~~~~~-~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 162 SENPD-MTRELLSAQVLSSFLSLFNSSES-KENLLRVLTFFENINE 205 (254)
T ss_pred ccCHH-HHHHHHhccchhHHHHHHccCCc-cHHHHHHHHHHHHHHH
Confidence 98865 44557777899999999988743 2778888888888864
No 34
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-10 Score=114.47 Aligned_cols=379 Identities=13% Similarity=0.036 Sum_probs=273.5
Q ss_pred cCHHHHHhhhcCCCHHHHHHHHHHHHHhc---CCChHHHHhcCchHHHHhhccC---CC---CHHHHHHHHHHHHHHHh-
Q 004225 359 VSLPGMLAGVWSDDSGLQLEATTWFRKLL---LPPSEKVIQSGVVARFVEFLTR---ED---NPQLQLEAARALTNIAS- 428 (767)
Q Consensus 359 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~---~~~~~~i~~~g~i~~L~~ll~~---~~---~~~~~~~a~~~L~~l~~- 428 (767)
+.+..+.+...|++.++..+..++|++++ ++.+..+.+.|+-+.++..|+. .+ +.+....+...|.|+.-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 34666666677888999999999999999 5668888899997777776653 22 23455566777788777
Q ss_pred --hhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHHhcCCch-hHHHHHhcCCHHHHHHHHccCCChHHHHHHHH
Q 004225 429 --ENTNVVIDGGAVPIFVKLLSS--PSDDVREKAVWALGNIARSSPR-DRDLVLSEKALIPLLAQLNKHAKPSMLRNATK 503 (767)
Q Consensus 429 --~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~ 503 (767)
+.+..+++.|+++.|...+.- .+....+.....++|+.+--.+ ..+...+...+..+++++...-.++.++.+..
T Consensus 167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence 678889999999999887654 6777778888888887743222 33455566778888888877778899999999
Q ss_pred HHHhhcCCCCCCCccchhchHHHHHHHhcC-CC-------HHHHHHHHHHHHhhccCChhHHHHHHhcC-cHHHHHHHhc
Q 004225 504 TLSRFCQGKPEPPFDQVRPALPALAQLVHS-ND-------NDVLRYACEALSCLSDGTNDKIQAVIEAD-VCPRLVKLLL 574 (767)
Q Consensus 504 ~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~L~~lL~ 574 (767)
.+...+.++...-.....|.+..++.+++. .+ ......++....-+..++ +..+.+...+ ++..+...+.
T Consensus 247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhc
Confidence 999999988777777788888888888874 22 222333444444444444 3444454444 8899999999
Q ss_pred CCCCCCcccchHHHHHhhhhccCCcceeeh----------------------hhhHHHHHHHhhhccCCHHHHHHHHHcC
Q 004225 575 HPLPFPFGLTPPLWTVRYIVKGDGFLTQCT----------------------GIAKEACRTISNITAGNREQIQVVIDAG 632 (767)
Q Consensus 575 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l----------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~ 632 (767)
+.|. +.+..+.-+++|++..++...+.+ +.+..++.++.|++..- .....++.+|
T Consensus 326 S~d~--~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aG 402 (604)
T KOG4500|consen 326 SDDS--NLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAG 402 (604)
T ss_pred CCch--hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhccccc
Confidence 9998 999999999999999888666555 66778889999998842 2345688899
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhhhcCCCHH-HHHHHHHHHHHHHHhhhhhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR-KGCIKPLCDLLLYADPE-IVTICLKGLENILKVGEAEM 710 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~-v~~~al~aL~~l~~~~~~~~ 710 (767)
+.+.+...++...+.+...-..++..+..+ .+..+..+.. ...++.|++--+++|.. +.-.....+..+++..-..
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k- 480 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK- 480 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh-
Confidence 999999999999999999888888876654 3333344433 34566777777777755 6677777777777754322
Q ss_pred ccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHH
Q 004225 711 NTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKI 753 (767)
Q Consensus 711 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~ 753 (767)
.....+.+.|+++......-.++-..+..|.-+
T Consensus 481 ----------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVa 513 (604)
T KOG4500|consen 481 ----------DVILTVPKSGGIKEKVSMFTKNHINMQNEALVA 513 (604)
T ss_pred ----------hhHhhccccccHHHHHHHHHHhhHHHhHHHHHH
Confidence 245556678888777777655554444444433
No 35
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.39 E-value=5.4e-12 Score=139.58 Aligned_cols=259 Identities=21% Similarity=0.196 Sum_probs=213.9
Q ss_pred HHHHHHHHhc--CCChHHHHhcCchHHHHhhccC-----------CCCHHHHHHHHHHHHHHHh---hhhH-HHHhCCCh
Q 004225 378 EATTWFRKLL--LPPSEKVIQSGVVARFVEFLTR-----------EDNPQLQLEAARALTNIAS---ENTN-VVIDGGAV 440 (767)
Q Consensus 378 ~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~-----------~~~~~~~~~a~~~L~~l~~---~~~~-~~~~~~~l 440 (767)
.|+..|.++. .+.++.+-+-|+++.+.+++.- ..+..+|..|..+|.|+.. .++. ..-..|++
T Consensus 317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 6777788877 4456677788999988887651 1135789999999999999 3333 33467999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHh-cCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CC-CCc
Q 004225 441 PIFVKLLSSPSDDVREKAVWALGNIA-RSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PE-PPF 517 (767)
Q Consensus 441 ~~L~~lL~~~~~~v~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~-~~~ 517 (767)
..+|..|.+...++..-.+.+|.||+ ..+...++.+-+.|-+..|...-.+.........++.+||||+.+. .+ ..+
T Consensus 397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i 476 (2195)
T KOG2122|consen 397 EAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI 476 (2195)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence 99999999888888888999999999 3334566777788989998887767778889999999999999887 34 456
Q ss_pred cchhchHHHHHHHhc----CCCHHHHHHHHHHHHhhccC---ChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHH
Q 004225 518 DQVRPALPALAQLVH----SNDNDVLRYACEALSCLSDG---TNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L 590 (767)
..+.|++.+|+.+|. .+.-.+.+.+-.+|.|++.. ..++.+.+.+..++..|++.|++...
T Consensus 477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SL------------ 544 (2195)
T KOG2122|consen 477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSL------------ 544 (2195)
T ss_pred hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcce------------
Confidence 677899999999996 34578888999999988744 45677777888999999999999998
Q ss_pred hhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcC
Q 004225 591 RYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISG 662 (767)
Q Consensus 591 ~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~ 662 (767)
.+..++|.+|+|+.+.+++..+.+.+.|.++.|.+++.+.+..+..-++.+|.|+...
T Consensus 545 --------------TiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 545 --------------TIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred --------------EEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 6777888888888999999999999999999999999999999999999999999864
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.36 E-value=2.1e-14 Score=140.45 Aligned_cols=293 Identities=16% Similarity=0.173 Sum_probs=146.3
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
.|+.|.++||.....-+.......++++++|.+.+|..+++- ....-...+++|+.|++..|+++++.....+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~-------s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS-------SLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH-------HHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 478888888876555433444567888888888888766532 1112223478888888888888877654322
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
...|++|+.|+++.|+.+.+.....+. .....++++...||.-... ..+...-.+...+..+++-.|.
T Consensus 212 -a~gC~kL~~lNlSwc~qi~~~gv~~~~-rG~~~l~~~~~kGC~e~~l----------e~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 212 -AEGCRKLKYLNLSWCPQISGNGVQALQ-RGCKELEKLSLKGCLELEL----------EALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred -HHhhhhHHHhhhccCchhhcCcchHHh-ccchhhhhhhhcccccccH----------HHHHHHhccChHhhccchhhhc
Confidence 245888888888888877764322222 2345566666666643221 1111111122223333333332
Q ss_pred CCCCcc------cccCCceeeeeecccccchhh-ccccccccccEEEecCCCccccccC--CCCcCCCCCEEEeccCccc
Q 004225 167 ASLPYE------KVENGMWVEIREAFHLEHILI-RESSVTNNLVILRVKGCDHLVNLVP--PSTSFQNLTNMVVSRCNNL 237 (767)
Q Consensus 167 ~~~~~~------~~~~l~~l~i~~~~~l~~~~~-~~~~~~~~L~~L~i~~~~~~~~~~~--~~~~~~~L~~L~l~~c~~l 237 (767)
...... +...++.+..++|..+....+ +-.+..++|+.|.+.+|..+++.-. -..+.+.|..+++.+|..+
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 222211 122444444455544433222 1123345555555555554432211 1234455555555555555
Q ss_pred hhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecC
Q 004225 238 KIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDD 317 (767)
Q Consensus 238 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~ 317 (767)
.+........+++.|+.|.+++|..+++-...... ...-....|..+.+++||.++.--.. ....+++|+.+++++
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~---~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS---SSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELID 435 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh---hccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeec
Confidence 44422233345555666666555554433110000 00001445555666666555444332 123455666666666
Q ss_pred CCCcc
Q 004225 318 CPDMK 322 (767)
Q Consensus 318 c~~l~ 322 (767)
|.++.
T Consensus 436 ~q~vt 440 (483)
T KOG4341|consen 436 CQDVT 440 (483)
T ss_pred hhhhh
Confidence 65544
No 37
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.3e-11 Score=125.17 Aligned_cols=300 Identities=17% Similarity=0.155 Sum_probs=211.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc----CCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSE----KALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP 513 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~----g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 513 (767)
.++|.|.++|.+++...++-|..+|..++.++++.-+.-... -.++.++++. +++++.+|..|+.++-++....+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence 478999999999999999999999999998877644331111 1578888888 88999999999999999887765
Q ss_pred CCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 514 EPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 514 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
..-......++..+..+-.+.+++||++.|.++..+.+..++....-. .++++.+++.-++.+. +|...|+.....+
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE--~VALEACEFwla~ 283 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDE--NVALEACEFWLAL 283 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcch--hHHHHHHHHHHHH
Confidence 555666778899999999999999999999999999987665543222 2578888888888888 8999998887777
Q ss_pred hccCCcceeeh---------------------------------------hhh---------------------------
Q 004225 594 VKGDGFLTQCT---------------------------------------GIA--------------------------- 607 (767)
Q Consensus 594 ~~~~~~~~~~l---------------------------------------~v~--------------------------- 607 (767)
+..+. ....+ +++
T Consensus 284 aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 284 AEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred hcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 75442 11100 000
Q ss_pred --HHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh----cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 004225 608 --KEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ----NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLC 681 (767)
Q Consensus 608 --~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~ 681 (767)
...-|.+...++..-+....++...+++.++.+++ +.+..+|+.++.|++.++.++.......+- ..++.|+
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~ 440 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--ELIPFLL 440 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--HHHHHHH
Confidence 00012222222222223333444455555555554 667899999999999999875333333222 3789999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 682 DLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 682 ~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
.++.++.+-||..++|.|.++....-.... .+|..-+ +..+.+.+-+.|..|+++|..+..++
T Consensus 441 ~~L~DKkplVRsITCWTLsRys~wv~~~~~--------~~~f~pv-----L~~ll~~llD~NK~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 441 SLLDDKKPLVRSITCWTLSRYSKWVVQDSR--------DEYFKPV-----LEGLLRRLLDSNKKVQEAACSAFATL 503 (885)
T ss_pred HHhccCccceeeeeeeeHhhhhhhHhcCCh--------HhhhHHH-----HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999875433221 1122222 34445556788999999998887765
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.28 E-value=6.8e-11 Score=132.01 Aligned_cols=349 Identities=17% Similarity=0.182 Sum_probs=243.5
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
.+..+.+-+.++++.++-.|++.+.++..+..-. -+++.+.+++.+++ +.+|..|+.++.++.....+.+-.. .
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~----~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~~~-~ 153 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAE----PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVEDE-L 153 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHH----HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHHGG-H
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhh----HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHHHH-H
Confidence 4667777889999999999999999988433222 24688888999998 9999999999999988333333223 6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
++.+.+++.+.++.++..|+.++..+ ..++.....+ -...++.+.+++ ...++..+..++..+..++...+.....
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~~~- 229 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDADK- 229 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHHHH-
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhhhH-
Confidence 89999999999999999999999999 2222211011 112455555666 7899999999999999988664221100
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCc
Q 004225 520 VRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGF 599 (767)
Q Consensus 520 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~ 599 (767)
..+++.+..++++.++.++..++.++..+....+ . -..+++.+..++.+.+. .++..++..+..++.....
T Consensus 230 -~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-~-----~~~~~~~L~~lL~s~~~--nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 230 -NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-L-----LQKAINPLIKLLSSSDP--NVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-H-----HHHHHHHHHHHHTSSSH--HHHHHHHHHHHHHCCHCHH
T ss_pred -HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-H-----HHhhHHHHHHHhhcccc--hhehhHHHHHHHhhcccch
Confidence 5688899999999999999999999998877543 1 12478899999998887 8999999999999876621
Q ss_pred ceeeh-------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh-cCCchhHHHHHHHHHHhhcCCCH
Q 004225 600 LTQCT-------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ-NAEFFTKKEAARAISNAISGGTH 665 (767)
Q Consensus 600 ~~~~l-------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~ 665 (767)
..... .++..++.++..++.. ...+. +++.|...+. ..+.+++..++.+++.++... +
T Consensus 301 ~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~-~ 372 (526)
T PF01602_consen 301 AVFNQSLILFFLLYDDDPSIRKKALDLLYKLANE--SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF-P 372 (526)
T ss_dssp HHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--H--HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-G
T ss_pred hhhhhhhhhheecCCCChhHHHHHHHHHhhcccc--cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc-C
Confidence 11111 7788888888887763 33332 5777888884 447889999999999988642 1
Q ss_pred HHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhc-CCCh
Q 004225 666 EQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKR-HDSN 744 (767)
Q Consensus 666 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~ 744 (767)
..... .++.+++++..++..+...+...+.+++...+.. ... +++.+.+.+. -.++
T Consensus 373 ~~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~------------~~~------~l~~L~~~l~~~~~~ 429 (526)
T PF01602_consen 373 PDAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL------------REK------ILKKLIELLEDISSP 429 (526)
T ss_dssp SSHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT------------HHH------HHHHHHHHHTSSSSH
T ss_pred chHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhh------------hHH------HHHHHHHHHHHhhHH
Confidence 22222 4667777777776777777777777777543221 111 1333444443 3667
Q ss_pred HHHHHHHHHHHHhc
Q 004225 745 GICEKAVKILEIYW 758 (767)
Q Consensus 745 ~v~~~a~~~l~~~~ 758 (767)
+++..+.|++.+|-
T Consensus 430 ~~~~~~~wilGEy~ 443 (526)
T PF01602_consen 430 EALAAAIWILGEYG 443 (526)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhcccC
Confidence 77777778777764
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.27 E-value=9.4e-11 Score=102.01 Aligned_cols=116 Identities=33% Similarity=0.544 Sum_probs=107.3
Q ss_pred HHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC
Q 004225 393 KVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSS 469 (767)
Q Consensus 393 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 469 (767)
.+++.|+++.+++++++++ +.++..|++++.+++. +....+++.|+++.+++++.++++.++..|+++|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678899999999999988 8999999999999998 66778888899999999999999999999999999999988
Q ss_pred chhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcC
Q 004225 470 PRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 470 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 510 (767)
+..+..+.+.|+++.+++.+ .+.+.++++.++|++.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 78888888999999999999 77899999999999999873
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.27 E-value=1.1e-09 Score=127.71 Aligned_cols=243 Identities=20% Similarity=0.232 Sum_probs=191.9
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGG 438 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 438 (767)
.+|.|++.|.++++.++..|+..|..+. ... ..+.|...|++++ +.+|..|+.+|..+.. +
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--------~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~---------~ 714 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVEVLP--------PAPALRDHLGSPD-PVVRAAALDVLRALRA---------G 714 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--------chHHHHHHhcCCC-HHHHHHHHHHHHhhcc---------C
Confidence 4788999999999999999999998875 111 1256777788877 9999999999887642 3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
....++..|.++|+.+|..|+.+|+.+-. .+.+...+ .++++.+|..++.+|..+....+
T Consensus 715 ~~~~l~~~L~D~d~~VR~~Av~aL~~~~~--------------~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~~----- 774 (897)
T PRK13800 715 DAALFAAALGDPDHRVRIEAVRALVSVDD--------------VESVAGAA-TDENREVRIAVAKGLATLGAGGA----- 774 (897)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHhcccC--------------cHHHHHHh-cCCCHHHHHHHHHHHHHhccccc-----
Confidence 34567889999999999999999997521 23456777 89999999999999999976531
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
..++.|..+++++++.++..++.+|..+.... ...+.+...+.++++
T Consensus 775 ---~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~-------------------- 821 (897)
T PRK13800 775 ---PAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRASAW-------------------- 821 (897)
T ss_pred ---hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCCCh--------------------
Confidence 23788999999999999999999999985432 123457788999888
Q ss_pred cceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 004225 599 FLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIK 678 (767)
Q Consensus 599 ~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~ 678 (767)
.+|..|+.+|+.+... ..++.|+.++++++..||..|+++|+.+.. ++. ..+
T Consensus 822 ------~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~--~~~---------a~~ 873 (897)
T PRK13800 822 ------QVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRWPG--DPA---------ARD 873 (897)
T ss_pred ------HHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhccCC--CHH---------HHH
Confidence 6777777777765331 356899999999999999999999999621 333 355
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHH
Q 004225 679 PLCDLLLYADPEIVTICLKGLEN 701 (767)
Q Consensus 679 ~L~~ll~~~~~~v~~~al~aL~~ 701 (767)
.|...+++.+++|+..|..+|..
T Consensus 874 ~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 874 ALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhh
Confidence 66788999999999999999863
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.25 E-value=4.9e-11 Score=103.77 Aligned_cols=118 Identities=28% Similarity=0.449 Sum_probs=106.8
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
.+++.|+++.+++++.+++++++..+++++++++.++++....+++.|+++.+++++ .++++.++..++|+++|++...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHccCc
Confidence 356889999999999999999999999999999999888999999999999999999 7789999999999999999887
Q ss_pred CC-CCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 004225 513 PE-PPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSD 551 (767)
Q Consensus 513 ~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 551 (767)
+. .......|+++.++.++.+.+.++++.+++++.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 43 3445567899999999999999999999999999873
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.24 E-value=8.9e-14 Score=136.14 Aligned_cols=288 Identities=16% Similarity=0.178 Sum_probs=204.7
Q ss_pred CCCCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccc
Q 004225 2 SCGIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSF 81 (767)
Q Consensus 2 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 81 (767)
...+||+++|.+++|.++++-.-.+....+++|++|++..|..++...- ......+++|++|+++.|+.+.+-
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L-------k~la~gC~kL~~lNlSwc~qi~~~ 232 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL-------KYLAEGCRKLKYLNLSWCPQISGN 232 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH-------HHHHHhhhhHHHhhhccCchhhcC
Confidence 3578999999999999877654444567899999999999998875411 123345899999999999998763
Q ss_pred cCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceee
Q 004225 82 CTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQ 161 (767)
Q Consensus 82 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 161 (767)
..... ...+..++.+...||..+...... ....+.+-+.++++..|..+++ ..+...-..+..|+.|.
T Consensus 233 gv~~~-~rG~~~l~~~~~kGC~e~~le~l~-~~~~~~~~i~~lnl~~c~~lTD----------~~~~~i~~~c~~lq~l~ 300 (483)
T KOG4341|consen 233 GVQAL-QRGCKELEKLSLKGCLELELEALL-KAAAYCLEILKLNLQHCNQLTD----------EDLWLIACGCHALQVLC 300 (483)
T ss_pred cchHH-hccchhhhhhhhcccccccHHHHH-HHhccChHhhccchhhhccccc----------hHHHHHhhhhhHhhhhc
Confidence 32221 234677888888899876644211 1124566777787778877666 23333345567888888
Q ss_pred ecCCCCCCCcc------cccCCceeeeeecccccchhhcc-ccccccccEEEecCCCcccc--ccCCCCcCCCCCEEEec
Q 004225 162 IGGYSASLPYE------KVENGMWVEIREAFHLEHILIRE-SSVTNNLVILRVKGCDHLVN--LVPPSTSFQNLTNMVVS 232 (767)
Q Consensus 162 l~~~~~~~~~~------~~~~l~~l~i~~~~~l~~~~~~~-~~~~~~L~~L~i~~~~~~~~--~~~~~~~~~~L~~L~l~ 232 (767)
.++|....... .-.+|+.+.+..|.++....+.. ....++|+.|.+.+|....+ +.....+++.|+.|.++
T Consensus 301 ~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 301 YSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS 380 (483)
T ss_pred ccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence 88887633321 12588889999999877765433 45679999999998876643 34446688999999999
Q ss_pred cCccchhhcCc---hhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCc
Q 004225 233 RCNNLKIVLTS---LIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPS 309 (767)
Q Consensus 233 ~c~~l~~~~~~---~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 309 (767)
+|..+++...- ....++..|+.+++.+|+.+++...+... .+++|+++++.+|...+.-+......++|+
T Consensus 381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-------~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-------ICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-------hCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 99999887321 11245678999999999988766544322 178999999999999888876655567777
Q ss_pred cceEee
Q 004225 310 LERLVV 315 (767)
Q Consensus 310 L~~L~i 315 (767)
++....
T Consensus 454 i~v~a~ 459 (483)
T KOG4341|consen 454 IKVHAY 459 (483)
T ss_pred ceehhh
Confidence 766554
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.24 E-value=1.6e-08 Score=112.61 Aligned_cols=316 Identities=11% Similarity=0.059 Sum_probs=223.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
.+..+.+-+.++++.++-.|++.+..+-.+..-. -+++.+.+.+.+.+ +.+|..|+.++.++.....+.+.+.+.
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e----~l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~pelv~~~~~ 180 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLE----YTLEPLRRAVADPD-PYVRKTAAMGLGKLFHDDMQLFYQQDF 180 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHH----HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCcccccccch
Confidence 4677778888999999999999888866333222 13566777888888 999999999999998734445556788
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
++.|.++|.+.|+.++..|+.+|..+...++... -...+.+..+++.+ ..-++-.+..++.+|.... |.. ...
T Consensus 181 ~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L-~e~~EW~Qi~IL~lL~~y~---P~~-~~e 253 (746)
T PTZ00429 181 KKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHL-PECNEWGQLYILELLAAQR---PSD-KES 253 (746)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHh-hcCChHHHHHHHHHHHhcC---CCC-cHH
Confidence 9999999999999999999999999986655322 22344667777877 5667778888887775532 221 122
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCC-hhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 520 VRPALPALAQLVHSNDNDVLRYACEALSCLSDGT-NDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 520 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
...++..+...+++.++.|...|+.++.++.... ++....+.. .+.+.++.++ +.++ +++.-+++.+..+....+
T Consensus 254 ~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~--eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 254 AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDA--ETQYIVCKNIHALLVIFP 329 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCc--cHHHHHHHHHHHHHHHCH
Confidence 3567888888889999999999999999998653 232232221 2335566664 4566 899999998887775544
Q ss_pred ccee-eh-----------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHH
Q 004225 599 FLTQ-CT-----------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHE 666 (767)
Q Consensus 599 ~~~~-~l-----------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 666 (767)
.... .+ .++...+.++..++...+ ... ++..|.+.....+.+++++++.++++++... +.
T Consensus 330 ~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~N--v~~-----IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~ 401 (746)
T PTZ00429 330 NLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSV--APE-----ILKELAEYASGVDMVFVVEVVRAIASLAIKV-DS 401 (746)
T ss_pred HHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCccc--HHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hH
Confidence 2110 01 677888888887776422 222 4566777777888899999999999999763 34
Q ss_pred HHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 667 QIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 667 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
.... ++..|++++..+.. +...++.++.++++.
T Consensus 402 ~a~~-----cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 402 VAPD-----CANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred HHHH-----HHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 3333 67778788865443 445677888888764
No 44
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-11 Score=126.52 Aligned_cols=299 Identities=15% Similarity=0.153 Sum_probs=153.5
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
++||+.+++.+. .|+.+|..+ ...++|++|++.++. +.++ -.+.+..+|.|++|+++.. .+.+++..
T Consensus 101 l~nLq~v~l~~N-~Lt~IP~f~--~~sghl~~L~L~~N~-I~sv--------~se~L~~l~alrslDLSrN-~is~i~~~ 167 (873)
T KOG4194|consen 101 LPNLQEVNLNKN-ELTRIPRFG--HESGHLEKLDLRHNL-ISSV--------TSEELSALPALRSLDLSRN-LISEIPKP 167 (873)
T ss_pred CCcceeeeeccc-hhhhccccc--ccccceeEEeeeccc-cccc--------cHHHHHhHhhhhhhhhhhc-hhhcccCC
Confidence 455555555553 244444333 334455555555442 3322 1245566788888888752 34444432
Q ss_pred CCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecC
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGG 164 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (767)
.+ ..=+++++|++.+.. ++....+.|. .+.+|..|+++.++..+- |. ..+.++++|++|.+..
T Consensus 168 sf--p~~~ni~~L~La~N~-It~l~~~~F~--~lnsL~tlkLsrNrittL-p~-----------r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 168 SF--PAKVNIKKLNLASNR-ITTLETGHFD--SLNSLLTLKLSRNRITTL-PQ-----------RSFKRLPKLESLDLNR 230 (873)
T ss_pred CC--CCCCCceEEeecccc-cccccccccc--ccchheeeecccCccccc-CH-----------HHhhhcchhhhhhccc
Confidence 21 112478888887643 3444334342 566777777776653221 11 1234444555544433
Q ss_pred CCC----CCCc------------------------ccccCCceeeeeecccccchhhccccccccccEEEecCCCccccc
Q 004225 165 YSA----SLPY------------------------EKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNL 216 (767)
Q Consensus 165 ~~~----~~~~------------------------~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~ 216 (767)
..- ...+ ..+..++.+.+.... ++.+.-.....+++|+.|+++.. .+..+
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~N-aI~ri 308 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYN-AIQRI 308 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchh-hhhee
Confidence 221 1111 122333334333322 33332222345788888888653 33333
Q ss_pred -cCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccc-------------------ccc-
Q 004225 217 -VPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDV-------------------VAK- 275 (767)
Q Consensus 217 -~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~-------------------~~~- 275 (767)
...|...++|+.|+|++. +++.+.+.. +..+..|++|++++.. +.++..+... ++.
T Consensus 309 h~d~WsftqkL~~LdLs~N-~i~~l~~~s-f~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSN-RITRLDEGS-FRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred ecchhhhcccceeEecccc-ccccCChhH-HHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch
Confidence 335788899999999764 455554433 3456667777666532 3333221100 000
Q ss_pred cccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhccc
Q 004225 276 DEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHG 341 (767)
Q Consensus 276 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~ 341 (767)
..-..+++|++|.+.| .++++++.. ....+++||+|++.+.+-...-|.-..++ .|+++-++.
T Consensus 386 ~~f~gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhccchhhhheeecC-ceeeecchh-hhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 0000267777777776 466766643 34578888888887775444333333343 677776664
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=4.4e-12 Score=143.90 Aligned_cols=291 Identities=20% Similarity=0.251 Sum_probs=198.0
Q ss_pred CCCCCccEEeeecCCC-ccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccc
Q 004225 3 CGIQNLTRLTLSCCMN-LRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSF 81 (767)
Q Consensus 3 ~~l~~L~~L~l~~c~~-l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 81 (767)
..+++|++|-+.+... +..+ +..++..++.|++||+++|.++.++ |..++.+-+|++|++++ ..+..+
T Consensus 542 ~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~L---------P~~I~~Li~LryL~L~~-t~I~~L 610 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKL---------PSSIGELVHLRYLDLSD-TGISHL 610 (889)
T ss_pred CCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcC---------ChHHhhhhhhhcccccC-CCcccc
Confidence 3466888998888653 4444 4445678999999999998877766 67788899999999886 457778
Q ss_pred cCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceee
Q 004225 82 CTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQ 161 (767)
Q Consensus 82 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 161 (767)
|.+ ...|.+|.+|++.....+... +... ..+++|+.|.+.......+ ......+.++.+|+.+.
T Consensus 611 P~~---l~~Lk~L~~Lnl~~~~~l~~~-~~i~--~~L~~Lr~L~l~~s~~~~~----------~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 611 PSG---LGNLKKLIYLNLEVTGRLESI-PGIL--LELQSLRVLRLPRSALSND----------KLLLKELENLEHLENLS 674 (889)
T ss_pred chH---HHHHHhhheeccccccccccc-cchh--hhcccccEEEeeccccccc----------hhhHHhhhcccchhhhe
Confidence 876 577889999999877766543 2222 2589999998875431111 11222346666777777
Q ss_pred ecCCCC--CCCccccc----CCceeeeeecccccchhhccccccccccEEEecCCCccccccCC-----CC-cCCCCCEE
Q 004225 162 IGGYSA--SLPYEKVE----NGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPP-----ST-SFQNLTNM 229 (767)
Q Consensus 162 l~~~~~--~~~~~~~~----~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-----~~-~~~~L~~L 229 (767)
+..... ...+..+. ..+.+.+..|. .... ......+.+|+.|.|.+|...+..... .. +|+++.++
T Consensus 675 ~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~-~~~~-~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 675 ITISSVLLLEDLLGMTRLRSLLQSLSIEGCS-KRTL-ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred eecchhHhHhhhhhhHHHHHHhHhhhhcccc-ccee-ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 655443 11111111 22233332222 1111 233456799999999999875432211 12 37899999
Q ss_pred EeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccc--ccccccccccceE-eecCCCCcccccCCCcccc
Q 004225 230 VVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVA--KDEVITFRELKEL-KLVDLERLTSFCSGNCAFK 306 (767)
Q Consensus 230 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~--~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~ 306 (767)
.+.+|...+++.+..+ .|+|++|++.+|+.++++.+...... ...+..|.++..+ .+.+.+.++.++.. +..
T Consensus 753 ~~~~~~~~r~l~~~~f---~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~--~l~ 827 (889)
T KOG4658|consen 753 SILNCHMLRDLTWLLF---APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWL--PLS 827 (889)
T ss_pred Hhhccccccccchhhc---cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEec--ccC
Confidence 9999999999866543 68999999999999988877654422 1235568888888 58888888888765 345
Q ss_pred CCccceEeecCCCCccccccc
Q 004225 307 FPSLERLVVDDCPDMKIFSEG 327 (767)
Q Consensus 307 ~~~L~~L~i~~c~~l~~~~~~ 327 (767)
++.|+.+.+..||+++++|..
T Consensus 828 ~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 828 FLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred ccchhheehhcCcccccCccc
Confidence 777999999999999988763
No 46
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.20 E-value=7.2e-09 Score=106.75 Aligned_cols=328 Identities=13% Similarity=0.081 Sum_probs=214.5
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHh-----CCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVID-----GGAVPIFVKLLSSPSDDVREKAVWALGNIARSS 469 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~-----~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 469 (767)
..+..+++++.....+++.......+..+.. .....+.+ ......++.+|..+|.-+...|+.+++.++..+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4567777788776657788878888887777 22233333 356778888999899999999999999998654
Q ss_pred chhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCC--CHHHHHHHHHHHH
Q 004225 470 PRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSN--DNDVLRYACEALS 547 (767)
Q Consensus 470 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~ 547 (767)
+.........-..+.+.+.+....+...+..|+.++..+.+.++.+......++++.|+.+++.. +.+++..++.++.
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 43211111111333455555333457888889999999999887776666677899999999753 5689999999999
Q ss_pred hhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHH
Q 004225 548 CLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQV 627 (767)
Q Consensus 548 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~ 627 (767)
-++...+ ........++++.++++++.... +.+.+-++.++.|+...+..... .......
T Consensus 213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~K-EKvvRv~l~~l~Nll~~~~~~~~------------------~~~~~~~ 272 (429)
T cd00256 213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTK-EKVIRIVLAIFRNLISKRVDREV------------------KKTAALQ 272 (429)
T ss_pred HHhccHH-HHHhhccccHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhhcccccch------------------hhhHHHH
Confidence 9987754 34445557899999999987654 24555555555555432211000 1112223
Q ss_pred HHHcCCHHHHHHHHhcC---CchhHHHHHHHHH-------Hhh---------------c---C----CCHHHHHHHHHc-
Q 004225 628 VIDAGVIGPLVDLLQNA---EFFTKKEAARAIS-------NAI---------------S---G----GTHEQIKYLVRK- 674 (767)
Q Consensus 628 ~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~-------nl~---------------~---~----~~~~~~~~l~~~- 674 (767)
+++.|+.+. ++.|+.. ++++.......-. .++ . + .-.+++..+.+.
T Consensus 273 mv~~~l~~~-l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~ 351 (429)
T cd00256 273 MVQCKVLKT-LQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKN 351 (429)
T ss_pred HHHcChHHH-HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcc
Confidence 444444443 3333322 2222221111110 011 0 0 012344555554
Q ss_pred -CChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHH
Q 004225 675 -GCIKPLCDLLL-YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVK 752 (767)
Q Consensus 675 -~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~ 752 (767)
.+++.|+++++ +.|+.+...|+.=|+.+++..+. .+..+.+.|+-+.+.+++.|+|++|+..|..
T Consensus 352 ~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 352 YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 35678889985 67888888899999999985432 3667889999999999999999999999999
Q ss_pred HHHHhcC
Q 004225 753 ILEIYWS 759 (767)
Q Consensus 753 ~l~~~~~ 759 (767)
++.++..
T Consensus 419 avQklm~ 425 (429)
T cd00256 419 AVQKLMV 425 (429)
T ss_pred HHHHHHH
Confidence 9988753
No 47
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=8.6e-10 Score=113.90 Aligned_cols=317 Identities=13% Similarity=0.128 Sum_probs=207.3
Q ss_pred HHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHH-------hcCchHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 004225 355 IQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVI-------QSGVVARFVEFLTREDNPQLQLEAARALTNIA 427 (767)
Q Consensus 355 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~-------~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 427 (767)
|+.+ +|.+.++|.+++.....-|..+|.+++....+.+- -.-.+|.++++.+++. |.+|..|..++..+.
T Consensus 126 wpel--Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 126 WPEL--LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFI 202 (885)
T ss_pred chhH--HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhhee
Confidence 4444 99999999999999999999999999911111110 1125789999999998 999999999987766
Q ss_pred h-hhhHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHH
Q 004225 428 S-ENTNVVI-DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTL 505 (767)
Q Consensus 428 ~-~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L 505 (767)
- .....+. -...+..+..+-.+++++||.+.+.++.-+....++-.. -.=.++++.++... ++.++.+.-.|+...
T Consensus 203 ~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~-phl~~IveyML~~t-qd~dE~VALEACEFw 280 (885)
T KOG2023|consen 203 IIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV-PHLDNIVEYMLQRT-QDVDENVALEACEFW 280 (885)
T ss_pred ecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc-cchHHHHHHHHHHc-cCcchhHHHHHHHHH
Confidence 5 2222221 112455666666779999999999999999866553211 11235777887777 788888988899988
Q ss_pred HhhcCCCCCCCcc---chhchHHHHHHHhcCCC-----------------------------------------------
Q 004225 506 SRFCQGKPEPPFD---QVRPALPALAQLVHSND----------------------------------------------- 535 (767)
Q Consensus 506 ~~l~~~~~~~~~~---~~~~~i~~L~~ll~~~~----------------------------------------------- 535 (767)
..++..+ .++.. .....+|.|++-+.-++
T Consensus 281 la~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe 359 (885)
T KOG2023|consen 281 LALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDE 359 (885)
T ss_pred HHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccc
Confidence 8888776 33222 33567777776553111
Q ss_pred ---------HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhh
Q 004225 536 ---------NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGI 606 (767)
Q Consensus 536 ---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v 606 (767)
.++|+..+.+|--++..-.+. +.. .++|.+-+.|.+++. .+
T Consensus 360 ~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL~-~l~PlLk~~L~~~~W--------------------------~v 409 (885)
T KOG2023|consen 360 DDDDDAFSDWNLRKCSAAALDVLANVFGDE---LLP-ILLPLLKEHLSSEEW--------------------------KV 409 (885)
T ss_pred cccccccccccHhhccHHHHHHHHHhhHHH---HHH-HHHHHHHHHcCcchh--------------------------hh
Confidence 123333333333332221111 111 255666666677777 67
Q ss_pred hHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC
Q 004225 607 AKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686 (767)
Q Consensus 607 ~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~ 686 (767)
++.++.++|.|+.|.-+..-.-.- .++|.++.+|.+..+-||..+||+|++.+.....+..+.... .++..|.+.+-+
T Consensus 410 rEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~ll~~llD 487 (885)
T KOG2023|consen 410 REAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEGLLRRLLD 487 (885)
T ss_pred hhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHHHHHHHhc
Confidence 777788888877764332221111 368999999999999999999999999876432222212111 134444444557
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhh
Q 004225 687 ADPEIVTICLKGLENILKVGEAE 709 (767)
Q Consensus 687 ~~~~v~~~al~aL~~l~~~~~~~ 709 (767)
++.+|+++|+.|...+-+.+..+
T Consensus 488 ~NK~VQEAAcsAfAtleE~A~~e 510 (885)
T KOG2023|consen 488 SNKKVQEAACSAFATLEEEAGEE 510 (885)
T ss_pred ccHHHHHHHHHHHHHHHHhccch
Confidence 89999999999999998765543
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.3e-09 Score=115.74 Aligned_cols=255 Identities=21% Similarity=0.212 Sum_probs=204.4
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHh----hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHH
Q 004225 400 VARFVEFLTREDNPQLQLEAARALTNIAS----ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRD 474 (767)
Q Consensus 400 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~ 474 (767)
+..|++-++.+.++..|.+|+.-|..+.. +....+--..++|.|+.+|+. .+.+++..|+++|.+++..-|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 56677777777448888888888777776 222223334578999999988 6799999999999999999898888
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC-C
Q 004225 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG-T 553 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~ 553 (767)
.+++.++|+.++.-|..-.-.++.++++.+|..+++.. ...+...|++...+..+.--...+++.|+.+..|.|.. .
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999988867778899999999999999885 45667788898888888877888999999999999955 4
Q ss_pred hhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc---CCHHHHHHHHH
Q 004225 554 NDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA---GNREQIQVVID 630 (767)
Q Consensus 554 ~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~---~~~~~~~~~~~ 630 (767)
++....+++ .+|.|..+|++.|. . ..+.++-++..++. ..++..+.+..
T Consensus 327 sd~f~~v~e--alPlL~~lLs~~D~--k------------------------~ies~~ic~~ri~d~f~h~~~kLdql~s 378 (1051)
T KOG0168|consen 327 SDEFHFVME--ALPLLTPLLSYQDK--K------------------------PIESVCICLTRIADGFQHGPDKLDQLCS 378 (1051)
T ss_pred CccchHHHH--HHHHHHHHHhhccc--h------------------------hHHHHHHHHHHHHHhcccChHHHHHHhc
Confidence 455555665 89999999999998 4 44444444444444 56788889999
Q ss_pred cCCHHHHHHHHhcC----CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc
Q 004225 631 AGVIGPLVDLLQNA----EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL 685 (767)
Q Consensus 631 ~~~i~~L~~ll~~~----~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~ 685 (767)
+|.+....+++... +..+..-.+.++.-|+.+ .+.....+...++...|.+++.
T Consensus 379 ~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~-~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 379 HDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG-SPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred hhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC-ChHHHHHHHHhhHHHHHHHHHh
Confidence 99999999998865 335666777788888876 6888888888999998888875
No 49
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.16 E-value=6.5e-09 Score=116.13 Aligned_cols=289 Identities=22% Similarity=0.230 Sum_probs=198.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGG 438 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~ 438 (767)
..+.+++.+.+.+...+.-+.-++..+...+.+.+.- +++.+.+-+.+++ +.++..|.+++.++.. +..+.
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l--~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~~~~~~~----- 114 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL--IINSLQKDLNSPN-PYIRGLALRTLSNIRTPEMAEP----- 114 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH--HHHHHHHHHCSSS-HHHHHHHHHHHHHH-SHHHHHH-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH--HHHHHHHhhcCCC-HHHHHHHHhhhhhhcccchhhH-----
Confidence 6888899999999999999998888888554443222 5788888889988 9999999999999987 44443
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
+++.+.+++.++++.||..|+.++..+...+++... .. .++.+.+++ .+.++.++.+|+.++..+ ...+.....
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~~ 188 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHTT
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhhh
Confidence 468889999999999999999999999977665422 22 578888999 888899999999999999 221111114
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
.....++.+.+++...++-.+..++.++..++...+..... ..+++.+..++++.+. .+.
T Consensus 189 ~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~--~V~--------------- 248 (526)
T PF01602_consen 189 LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSP--SVV--------------- 248 (526)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHH--HHH---------------
T ss_pred hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcccc--HHH---------------
Confidence 45566677777778899999999999999998876655421 2467778888887777 444
Q ss_pred cceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 004225 599 FLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIK 678 (767)
Q Consensus 599 ~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~ 678 (767)
.+++.++..+..... .-..+++.+..++.++++.+|..++.++..++.. .+... . ...
T Consensus 249 ---------~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~-~~~~v----~--~~~ 306 (526)
T PF01602_consen 249 ---------YEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS-NPPAV----F--NQS 306 (526)
T ss_dssp ---------HHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH-CHHHH----G--THH
T ss_pred ---------HHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc-cchhh----h--hhh
Confidence 444444444333221 1123556666666666666777666666666654 21211 1 112
Q ss_pred HHHhhhc-CCCHHHHHHHHHHHHHHHH
Q 004225 679 PLCDLLL-YADPEIVTICLKGLENILK 704 (767)
Q Consensus 679 ~L~~ll~-~~~~~v~~~al~aL~~l~~ 704 (767)
..+..+. +.+..++..++..|..++.
T Consensus 307 ~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 307 LILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hhhheecCCCChhHHHHHHHHHhhccc
Confidence 2222333 5666666666666666664
No 50
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=9.8e-09 Score=108.14 Aligned_cols=277 Identities=16% Similarity=0.153 Sum_probs=182.9
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC--CccchhchH
Q 004225 447 LSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP--PFDQVRPAL 524 (767)
Q Consensus 447 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~--~~~~~~~~i 524 (767)
++++|..-++.|+.++|.+-.+....+..-+..++++.+++++ .+++.-++..+.|+++.++..-+.. ........+
T Consensus 373 i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l 451 (859)
T KOG1241|consen 373 IQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL 451 (859)
T ss_pred cCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence 3445666778888888888877666665566778999999999 6888999999999999999886422 334445566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHH-----HHh---cCcHHHHHHHhcCCCC-CCcccchHHHHHhhhhc
Q 004225 525 PALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQA-----VIE---ADVCPRLVKLLLHPLP-FPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 525 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-----~~~---~~~~~~L~~lL~~~~~-~~~v~~~a~~~L~~l~~ 595 (767)
+.++.-+. +.+.+..++||++.++++.-.+.... ... ..++..|++.-...|. ....|..|..+|.-+..
T Consensus 452 ~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk 530 (859)
T KOG1241|consen 452 SALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIK 530 (859)
T ss_pred HHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 66655553 44889999999999998542211100 000 0133344444333221 12678888888988886
Q ss_pred cCCccee-eh-----------------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC-
Q 004225 596 GDGFLTQ-CT-----------------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA- 644 (767)
Q Consensus 596 ~~~~~~~-~l-----------------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~- 644 (767)
+.+...- .+ +++...|.+|..+.......+..+.+ .++..++++++++
T Consensus 531 ~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s~~ 609 (859)
T KOG1241|consen 531 NSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMGLFLRIFESKR 609 (859)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHHHHHHHHcCCc
Confidence 6542211 11 44555566666666533333333333 3677788888874
Q ss_pred CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhh-cCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHH
Q 004225 645 EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLL-LYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYA 723 (767)
Q Consensus 645 ~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~ 723 (767)
+.-+..+|..+++.++..-.....+++- .+.++|..-+ +..+..|...|...+..++...+. .+.+|+
T Consensus 610 s~~v~e~a~laV~tl~~~Lg~~F~kym~--~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~---------~i~py~ 678 (859)
T KOG1241|consen 610 SAVVHEEAFLAVSTLAESLGKGFAKYMP--AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED---------DILPYC 678 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh---------hhhhHH
Confidence 4567888999999888765555555533 3778887777 557788999999999999987665 456677
Q ss_pred HHHHhhchHHHHHHHhcCC
Q 004225 724 RLVEAAEGFKKIEDLKRHD 742 (767)
Q Consensus 724 ~~l~~~g~~~~l~~l~~~~ 742 (767)
..+ +..|.+.+.++
T Consensus 679 d~~-----mt~Lvq~Lss~ 692 (859)
T KOG1241|consen 679 DEL-----MTVLVQCLSSP 692 (859)
T ss_pred HHH-----HHHHHHHccCc
Confidence 777 55666666554
No 51
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.10 E-value=2.1e-08 Score=103.32 Aligned_cols=334 Identities=12% Similarity=0.042 Sum_probs=219.6
Q ss_pred HHHhhhc-CCCHHHHHHHHHHHHHhc--CCC-hHHHHh-----cCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhh-
Q 004225 363 GMLAGVW-SDDSGLQLEATTWFRKLL--LPP-SEKVIQ-----SGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENT- 431 (767)
Q Consensus 363 ~l~~~l~-s~~~~~~~~a~~~L~~l~--~~~-~~~i~~-----~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~- 431 (767)
.++..++ ....++....+..+..+. .+. ...+.+ .+....++.++..++ .-++..|+.+|+.++. ...
T Consensus 57 ~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~~~~ 135 (429)
T cd00256 57 TFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFGLAK 135 (429)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcCccc
Confidence 3444454 455666666777777766 332 233333 356778888898877 7899999999999987 111
Q ss_pred -HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHhh
Q 004225 432 -NVVIDGGAVPIFVKLLSSP-SDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHA-KPSMLRNATKTLSRF 508 (767)
Q Consensus 432 -~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l 508 (767)
......-.++.+...++++ +...+..|+.++..+... +.+|..+.+.++++.++++++... +.+++..++.+++-+
T Consensus 136 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL 214 (429)
T cd00256 136 MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL 214 (429)
T ss_pred cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 1111111334455556553 467788889999999865 668988989999999999996434 678999999999999
Q ss_pred cCCCCCCCccchhchHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCh------hHHHHHHhcCcHHHHHHHhcCCCCCC-
Q 004225 509 CQGKPEPPFDQVRPALPALAQLVHS-NDNDVLRYACEALSCLSDGTN------DKIQAVIEADVCPRLVKLLLHPLPFP- 580 (767)
Q Consensus 509 ~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~~~~L~~lL~~~~~~~- 580 (767)
+-..+........+.++.++.+++. ..+++.+-++.++.|+...+. .....+++.++.+ +++.|......+
T Consensus 215 SF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~De 293 (429)
T cd00256 215 TFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDE 293 (429)
T ss_pred hccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcH
Confidence 9887554555557899999999984 458999999999999997531 2334455555544 555555443211
Q ss_pred cccchHHHHHhhhhccC-CcceeehhhhHHHHHHHhhhccCCH---------HHHHHHHHc--CCHHHHHHHHh-cCCch
Q 004225 581 FGLTPPLWTVRYIVKGD-GFLTQCTGIAKEACRTISNITAGNR---------EQIQVVIDA--GVIGPLVDLLQ-NAEFF 647 (767)
Q Consensus 581 ~v~~~a~~~L~~l~~~~-~~~~~~l~v~~~a~~~l~nl~~~~~---------~~~~~~~~~--~~i~~L~~ll~-~~~~~ 647 (767)
++. ..+..+....... ...+ ..-+......+....-+| ++...+-+. .++..|+++++ +.++.
T Consensus 294 dL~-edl~~L~e~L~~~~k~lt---sfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 294 DLT-DDLKFLTEELKNSVQDLS---SFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred HHH-HHHHHHHHHHHHHHHHcC---CHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 332 2222222221100 0000 111122222111111111 122223333 34788999995 55788
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 648 TKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 648 v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
+..-||.=++.++.. .|.....+-+.|+=..+++++.++|++|+.+|+.|+..++.
T Consensus 370 ~laVAc~Dige~vr~-~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRH-YPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHH-CccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 889999999999998 47777777778999999999999999999999999998874
No 52
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.08 E-value=1.4e-08 Score=105.60 Aligned_cols=335 Identities=15% Similarity=0.141 Sum_probs=227.8
Q ss_pred CCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHH
Q 004225 409 REDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSS--PSDDVREKAVWALGNIARSSPRDRDLVLSEKALI 483 (767)
Q Consensus 409 ~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 483 (767)
+.+ |+....|..-..|.+. +.+..+++.|+++.++.++.. ..++.+.+.+.+++..+.+.....+.+.+.+.++
T Consensus 20 ~~d-pe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll 98 (678)
T KOG1293|consen 20 HLD-PEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL 98 (678)
T ss_pred cCC-HHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence 445 5666667777777776 555668999999999998876 4577888888899999988888888899999999
Q ss_pred HHHHHHccCCC-hHHHHHHHHHHHhhcCCCCCC---CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHH
Q 004225 484 PLLAQLNKHAK-PSMLRNATKTLSRFCQGKPEP---PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQA 559 (767)
Q Consensus 484 ~L~~ll~~~~~-~~~~~~~~~~L~~l~~~~~~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 559 (767)
.++.++ ...+ ..+++.++.++.++...++.. .......+++.+..++..+...+...-+....+.+... +....
T Consensus 99 ~Ll~LL-s~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~I 176 (678)
T KOG1293|consen 99 KLLQLL-SESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLI 176 (678)
T ss_pred HHHHHh-cCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhhe
Confidence 999999 6666 889999999999998877443 33344566776666666455555555555556666554 44444
Q ss_pred HHhcCcHHHHHHHhcCCCCCCcccchHHHHHh---hhhccCCcceeeh------------------------hhhHHHHH
Q 004225 560 VIEADVCPRLVKLLLHPLPFPFGLTPPLWTVR---YIVKGDGFLTQCT------------------------GIAKEACR 612 (767)
Q Consensus 560 ~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~---~l~~~~~~~~~~l------------------------~v~~~a~~ 612 (767)
....++.+.+.-++..... ..+.+|+.+++ .+..+++.....+ +.+-.++.
T Consensus 177 l~Na~i~ekI~~l~~~~s~--~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~ 254 (678)
T KOG1293|consen 177 LCNAGILEKINILLMYLSS--KLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE 254 (678)
T ss_pred eccccchhhHHHHHHhhhH--HHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence 6677888888888888777 89999999999 7766666443332 33344444
Q ss_pred HHhhhccCC--------H-------------------------------------------HHHHHHHHcCCHHHHHHHH
Q 004225 613 TISNITAGN--------R-------------------------------------------EQIQVVIDAGVIGPLVDLL 641 (767)
Q Consensus 613 ~l~nl~~~~--------~-------------------------------------------~~~~~~~~~~~i~~L~~ll 641 (767)
++.++...+ + .......+....+...+++
T Consensus 255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell 334 (678)
T KOG1293|consen 255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL 334 (678)
T ss_pred HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence 444443322 0 0000111222233333333
Q ss_pred hcC----------------------------------------------------CchhHHHHHHHHHHhhcCCCHHHHH
Q 004225 642 QNA----------------------------------------------------EFFTKKEAARAISNAISGGTHEQIK 669 (767)
Q Consensus 642 ~~~----------------------------------------------------~~~v~~~a~~~L~nl~~~~~~~~~~ 669 (767)
... +...+..|+..+-+++... ..-..
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV-~aL~t 413 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSV-SALRT 413 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHH-HHHHc
Confidence 211 1122333333333333210 00011
Q ss_pred HHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHH
Q 004225 670 YLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEK 749 (767)
Q Consensus 670 ~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 749 (767)
.+-..++..+|+.++.+++..|...+++||.|++.. +-.++..+.+.|+++.+..+..++++.++..
T Consensus 414 g~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVme-------------fs~~kskfl~~ngId~l~s~~~~~~~n~r~~ 480 (678)
T KOG1293|consen 414 GLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVME-------------FSNLKSKFLRNNGIDILESMLTDPDFNSRAN 480 (678)
T ss_pred CCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh-------------cccHHHHHHHcCcHHHHHHHhcCCCchHHHH
Confidence 123457899999999999999999999999999984 3347788889999999999999999999999
Q ss_pred HHHHHHHh-cCCCc
Q 004225 750 AVKILEIY-WSCGV 762 (767)
Q Consensus 750 a~~~l~~~-~~~~~ 762 (767)
+.|+|+.. |.+++
T Consensus 481 ~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 481 SLWVLRHLMFNCDE 494 (678)
T ss_pred HHHHHHHHHhcchH
Confidence 99999865 66554
No 53
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.07 E-value=1e-07 Score=94.35 Aligned_cols=327 Identities=13% Similarity=0.067 Sum_probs=212.1
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHH-------hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVI-------DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSS 469 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~-------~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 469 (767)
.+..++.++...+.++....+...+..+.. ..+..++ +.-..+.++.+|...|.-+...+.++++.++...
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 467778888877656677767777777766 2222211 2234678899999999999998999999998544
Q ss_pred chhHHHHHhcC-CHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc--CCCHHHHHHHHHHH
Q 004225 470 PRDRDLVLSEK-ALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH--SNDNDVLRYACEAL 546 (767)
Q Consensus 470 ~~~~~~~~~~g-~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L 546 (767)
...... .+.. ....+-..++++.+.+....|+.+|..+...++.+.......++..++..+. ..+..++...+.++
T Consensus 146 ~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 146 NCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred cccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 322110 0000 2234445554557888899999999999999888777777777777777773 44688999999999
Q ss_pred HhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHH
Q 004225 547 SCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQ 626 (767)
Q Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~ 626 (767)
.-++.+++.. +.+...+.++.+..++++... +.|..-.+.++.|+....++. +++ .+...
T Consensus 225 WlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~K-EKV~Rivlai~~Nll~k~~~~----~~~--------------k~~~~ 284 (442)
T KOG2759|consen 225 WLLTFNPHAA-EKLKRFDLIQDLSDIVKESTK-EKVTRIVLAIFRNLLDKGPDR----ETK--------------KDIAS 284 (442)
T ss_pred HHhhcCHHHH-HHHhhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCchh----hHH--------------HHHHH
Confidence 9998776544 555667899999999987654 234444444444444322110 011 12223
Q ss_pred HHHHcCCHHHHHHHHhcC--CchhHHHHHHHHHH-------hhc----------------------CCCHHHHHHHHHc-
Q 004225 627 VVIDAGVIGPLVDLLQNA--EFFTKKEAARAISN-------AIS----------------------GGTHEQIKYLVRK- 674 (767)
Q Consensus 627 ~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~n-------l~~----------------------~~~~~~~~~l~~~- 674 (767)
.++..++.+.+-.+-+.. ++++....-..-.. +++ +.-.+.+..+.++
T Consensus 285 ~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnenn 364 (442)
T KOG2759|consen 285 QMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENN 364 (442)
T ss_pred HHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhcc
Confidence 344444443333333221 22222211111111 110 0123445555553
Q ss_pred -CChHHHHhhhcCC-CHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHH
Q 004225 675 -GCIKPLCDLLLYA-DPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVK 752 (767)
Q Consensus 675 -~~i~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~ 752 (767)
.+++.|+.+++.. ||.+...|+.=|..+++.. +.....+.+.||-+.+.++++|+|++|+..|..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y-------------P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALl 431 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHY-------------PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALL 431 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC-------------chHhHHHHHhchHHHHHHHhcCCCchHHHHHHH
Confidence 4688899999864 6888899999999999853 335778999999999999999999999999999
Q ss_pred HHHHhcC
Q 004225 753 ILEIYWS 759 (767)
Q Consensus 753 ~l~~~~~ 759 (767)
++.++..
T Consensus 432 avQ~lm~ 438 (442)
T KOG2759|consen 432 AVQKLMV 438 (442)
T ss_pred HHHHHHh
Confidence 9987754
No 54
>PTZ00429 beta-adaptin; Provisional
Probab=99.07 E-value=3e-07 Score=102.59 Aligned_cols=347 Identities=13% Similarity=0.123 Sum_probs=233.5
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChH-HHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSE-KVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDG 437 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~ 437 (767)
.++.+++.+.+++.+++.-..-++.+++....+ .+. +++.+.+-+.+++ |.+|-.|++++..+.. +..+.
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~~~i~e~---- 140 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRVSSVLEY---- 140 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCcHHHHHH----
Confidence 377788888999999999999999888833322 222 3788888899888 9999999998888765 33222
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCc
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPF 517 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 517 (767)
+++.+.+.+.+.++-||..|+.++.++...+++ .+.+.|.++.+.+++ .+.++.++.+|+.+|..+....+. ..
T Consensus 141 -l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~-~l 214 (746)
T PTZ00429 141 -TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSE-KI 214 (746)
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCch-hh
Confidence 356788888999999999999999999876664 344667889999988 899999999999999999876543 23
Q ss_pred cchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccC
Q 004225 518 DQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGD 597 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~ 597 (767)
....+.+..++..+..-++-.+..++.++.......+.. . ..++..+...+++.+. .|...|++++.++....
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e---~--~~il~~l~~~Lq~~N~--AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES---A--ETLLTRVLPRMSHQNP--AVVMGAIKVVANLASRC 287 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH---H--HHHHHHHHHHhcCCCH--HHHHHHHHHHHHhcCcC
Confidence 344556666777777777888888888886543222221 1 1477888889999988 99999999998887542
Q ss_pred CcceeehhhhHHHH----HHHhhhccCCHHHHHHHHHc---------CCHHHHHHHH---hcCCchhHHHHHHHHHHhhc
Q 004225 598 GFLTQCTGIAKEAC----RTISNITAGNREQIQVVIDA---------GVIGPLVDLL---QNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 598 ~~~~~~l~v~~~a~----~~l~nl~~~~~~~~~~~~~~---------~~i~~L~~ll---~~~~~~v~~~a~~~L~nl~~ 661 (767)
+. +....++ ..+..+..++++..-.++.+ .++..-++.. .++...+|.....+|..++.
T Consensus 288 ~~-----~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lan 362 (746)
T PTZ00429 288 SQ-----ELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVT 362 (746)
T ss_pred CH-----HHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcC
Confidence 11 1222222 12222333333322211111 1111111111 12233588888888888876
Q ss_pred CCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC
Q 004225 662 GGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH 741 (767)
Q Consensus 662 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~ 741 (767)
. +.+.. ++.-|.+...+.+.+++..++.++.+++...+ .. ....++.|.+++..
T Consensus 363 e---~Nv~~-----IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-------------~~-----a~~cV~~Ll~ll~~ 416 (746)
T PTZ00429 363 P---SVAPE-----ILKELAEYASGVDMVFVVEVVRAIASLAIKVD-------------SV-----APDCANLLLQIVDR 416 (746)
T ss_pred c---ccHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-------------HH-----HHHHHHHHHHHhcC
Confidence 5 33333 34566677778889999999999999986321 12 33447788888866
Q ss_pred CChHHHHHHHHHHHHhcC
Q 004225 742 DSNGICEKAVKILEIYWS 759 (767)
Q Consensus 742 ~~~~v~~~a~~~l~~~~~ 759 (767)
.. ++...++.+++.+++
T Consensus 417 ~~-~~v~e~i~vik~Ilr 433 (746)
T PTZ00429 417 RP-ELLPQVVTAAKDIVR 433 (746)
T ss_pred Cc-hhHHHHHHHHHHHHH
Confidence 43 345567777776644
No 55
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=4e-08 Score=103.66 Aligned_cols=322 Identities=15% Similarity=0.174 Sum_probs=212.5
Q ss_pred HHHHhhcCHHHHHhhhcCCCHH-HHHHHHHHHHHhc-CCChHHHH--hcCchHHHHhhcc-CCCCHHHHHHHHHHHHHHH
Q 004225 353 TTIQKLVSLPGMLAGVWSDDSG-LQLEATTWFRKLL-LPPSEKVI--QSGVVARFVEFLT-REDNPQLQLEAARALTNIA 427 (767)
Q Consensus 353 ~~~~~~~~i~~l~~~l~s~~~~-~~~~a~~~L~~l~-~~~~~~i~--~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~ 427 (767)
..|+.+ ++.++.....+.+. ++..++.+++.++ +...+.+. ...++-.+++..+ .+.+..+|..|..+|.+-.
T Consensus 125 n~wp~l--i~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsL 202 (859)
T KOG1241|consen 125 NQWPEL--IVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSL 202 (859)
T ss_pred hhCHHH--HHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHH
Confidence 446665 77777777766665 7888999999999 33333322 2345555555444 3344789999999999887
Q ss_pred h---hhhH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHH
Q 004225 428 S---ENTN-VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATK 503 (767)
Q Consensus 428 ~---~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~ 503 (767)
. .+.. ..-..=++...++.-.++|.+++..|..+|..+..-.-++...-+.......-+..+ .++++++.-.++.
T Consensus 203 ef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiE 281 (859)
T KOG1241|consen 203 EFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIE 281 (859)
T ss_pred HHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHH
Confidence 7 1211 111222455667777789999999999999999864444333333333444555566 6888899888888
Q ss_pred HHHhhcCCCCC------------CC-------ccchhchHHHHHHHhcC-------CCHHHHHHHHHHHHhhccCChhHH
Q 004225 504 TLSRFCQGKPE------------PP-------FDQVRPALPALAQLVHS-------NDNDVLRYACEALSCLSDGTNDKI 557 (767)
Q Consensus 504 ~L~~l~~~~~~------------~~-------~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~ 557 (767)
.-+++|..... .. .....+++|.|++++.+ ++...-.+|-.||.-++....+.
T Consensus 282 FWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~- 360 (859)
T KOG1241|consen 282 FWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD- 360 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-
Confidence 87777654210 01 11234788899988864 23566666666766666443222
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHH
Q 004225 558 QAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPL 637 (767)
Q Consensus 558 ~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L 637 (767)
++. .++|-+-+-+++++. .-+..|+.+++.+..+.......-+..+.+|.+
T Consensus 361 --Iv~-~Vl~Fiee~i~~pdw--------------------------r~reaavmAFGSIl~gp~~~~Lt~iV~qalp~i 411 (859)
T KOG1241|consen 361 --IVP-HVLPFIEENIQNPDW--------------------------RNREAAVMAFGSILEGPEPDKLTPIVIQALPSI 411 (859)
T ss_pred --chh-hhHHHHHHhcCCcch--------------------------hhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHH
Confidence 222 466777778888888 677888888888888766555555566799999
Q ss_pred HHHHhcCCchhHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 004225 638 VDLLQNAEFFTKKEAARAISNAISGGTHEQI-KYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAE 709 (767)
Q Consensus 638 ~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~ 709 (767)
++++.++.-.++..++|+++.++... ++.+ ....-...+..+..=+ ...|.+..+++|++.++++.....
T Consensus 412 i~lm~D~sl~VkdTaAwtlgrI~d~l-~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 412 INLMSDPSLWVKDTAAWTLGRIADFL-PEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred HHHhcCchhhhcchHHHHHHHHHhhc-hhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHh
Confidence 99999888899999999999999863 3322 1111122333333333 257889999999999999754433
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.03 E-value=1.1e-08 Score=113.51 Aligned_cols=176 Identities=18% Similarity=0.152 Sum_probs=104.2
Q ss_pred HHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHH
Q 004225 545 ALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQ 624 (767)
Q Consensus 545 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~ 624 (767)
++.+++...++....+.+.+++..+.+.++.-+. ++++..+++.+++++...+...... . .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~-~~~~~~il~~l~n~~~~~~~~~~~~-~-~---------------- 554 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDN-EELHRKILGLLGNLAEVLELRELLM-I-F---------------- 554 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHhhhhhhhh-H-H----------------
Confidence 7788899999999999999999999999987633 4677777777777764322111100 0 0
Q ss_pred HHHHHHcCCHHHHHHHHhcCCc-hhHHHHHHHHHHhhcCCC-----------------------HHHHHHHHHcCChHH-
Q 004225 625 IQVVIDAGVIGPLVDLLQNAEF-FTKKEAARAISNAISGGT-----------------------HEQIKYLVRKGCIKP- 679 (767)
Q Consensus 625 ~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~nl~~~~~-----------------------~~~~~~l~~~~~i~~- 679 (767)
..++. ..+-.++..-+. +.-..|+..|+.+...++ ...+ .......+.+
T Consensus 555 --~~~~~---~~f~~~~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~-~~~~~~~f~~~ 628 (699)
T KOG3665|consen 555 --EFIDF---SVFKVLLNKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEI-RVINDRSFFPR 628 (699)
T ss_pred --HHHHH---HHHHHHHhhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccce-eehhhhhcchh
Confidence 00000 011111111111 333344444444443211 1111 1112233444
Q ss_pred HHhhhc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhc-CCChHHHHHHHHHHHHh
Q 004225 680 LCDLLL-YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKR-HDSNGICEKAVKILEIY 757 (767)
Q Consensus 680 L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l~~~ 757 (767)
+..++. +..+..+.+|+|++.+++... ..+++.+.+.|++..+.++.- +...+++..+..++..+
T Consensus 629 ~~~il~~s~~~g~~lWal~ti~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 629 ILRILRLSKSDGSQLWALWTIKNVLEQN-------------KEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred HHHHhcccCCCchHHHHHHHHHHHHHcC-------------hhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 555555 456788899999999999732 237888889999999988743 33667888888887765
Q ss_pred c
Q 004225 758 W 758 (767)
Q Consensus 758 ~ 758 (767)
.
T Consensus 696 ~ 696 (699)
T KOG3665|consen 696 E 696 (699)
T ss_pred c
Confidence 4
No 57
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.96 E-value=3.7e-11 Score=123.48 Aligned_cols=264 Identities=18% Similarity=0.216 Sum_probs=155.7
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEe---------------ccchhhcccccCCCCccc
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIV---------------MDNQEERKKNIVMFPQLQ 68 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~L~ 68 (767)
.+..|+.|+|++. .++..|..- ..-.++-+|+++++. ++.++. .+..+.+|+.++.+.+|+
T Consensus 101 ~l~dLt~lDLShN-qL~EvP~~L--E~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 101 RLKDLTILDLSHN-QLREVPTNL--EYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred ccccceeeecchh-hhhhcchhh--hhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 3566888888885 466663221 344556777777653 333311 011244456666666677
Q ss_pred eeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchh
Q 004225 69 YLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLG 148 (767)
Q Consensus 69 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 148 (767)
+|.+++.| |..+.... ..++++|+.|++++.......+|..+ ..+.+|..+++++++. . .+.
T Consensus 177 tL~Ls~NP-L~hfQLrQ--LPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~L-p------------~vP 238 (1255)
T KOG0444|consen 177 TLKLSNNP-LNHFQLRQ--LPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENNL-P------------IVP 238 (1255)
T ss_pred hhhcCCCh-hhHHHHhc--CccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccccCC-C------------cch
Confidence 77766655 22222211 12345566666666554443333222 2466666666665432 1 123
Q ss_pred hHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCE
Q 004225 149 DFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTN 228 (767)
Q Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~ 228 (767)
+.+.++++|+.|.+++.. ++.+. -......+||+|+++. +.++.++.....+++|++
T Consensus 239 ecly~l~~LrrLNLS~N~---------------------iteL~-~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNK---------------------ITELN-MTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTK 295 (1255)
T ss_pred HHHhhhhhhheeccCcCc---------------------eeeee-ccHHHHhhhhhhcccc-chhccchHHHhhhHHHHH
Confidence 345556666666666543 22221 0112246788888865 345555556677888998
Q ss_pred EEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCC
Q 004225 229 MVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFP 308 (767)
Q Consensus 229 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 308 (767)
|.+.+. ++..-...+-.+.+.+|+.++..+. .++-+|.+... +++|+.|.++ |..|-.+|.. .+.+|
T Consensus 296 Ly~n~N-kL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcR--------C~kL~kL~L~-~NrLiTLPea--IHlL~ 362 (1255)
T KOG0444|consen 296 LYANNN-KLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCR--------CVKLQKLKLD-HNRLITLPEA--IHLLP 362 (1255)
T ss_pred HHhccC-cccccCCccchhhhhhhHHHHhhcc-ccccCchhhhh--------hHHHHHhccc-ccceeechhh--hhhcC
Confidence 888654 3444333333567888888877653 37777666655 8999999996 6788888854 56789
Q ss_pred ccceEeecCCCCccccc
Q 004225 309 SLERLVVDDCPDMKIFS 325 (767)
Q Consensus 309 ~L~~L~i~~c~~l~~~~ 325 (767)
.|+.|++++.|+|.+=|
T Consensus 363 ~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 363 DLKVLDLRENPNLVMPP 379 (1255)
T ss_pred CcceeeccCCcCccCCC
Confidence 99999999999997533
No 58
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.5e-08 Score=96.49 Aligned_cols=180 Identities=17% Similarity=0.149 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHH
Q 004225 412 NPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQL 489 (767)
Q Consensus 412 ~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 489 (767)
+++-+..|..-|..++. ++...++..|++..++.++++.+..+|..|+|+++..+..+|.....+++.|+.+.|+..+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 48888989988888888 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcC--CCHHHHHHHHHHHHhhccCChhHHHHHHhcCcH
Q 004225 490 NKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHS--NDNDVLRYACEALSCLSDGTNDKIQAVIEADVC 566 (767)
Q Consensus 490 ~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 566 (767)
..+.+..++..|+++++.+.++. +........++...|...+++ .+...++.++..+..+..........+...++.
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 77777888999999999999998 455555556668999999997 568889999999999997765554444445666
Q ss_pred HHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 567 PRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 567 ~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
..+..+....+. ++...|+.++-.+
T Consensus 256 ~~~~~l~~~l~~--~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 256 RVLENLISSLDF--EVNEAALTALLSL 280 (342)
T ss_pred HHHHHHhhccch--hhhHHHHHHHHHH
Confidence 667777777777 5555555554333
No 59
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.91 E-value=9.4e-09 Score=114.55 Aligned_cols=254 Identities=19% Similarity=0.110 Sum_probs=150.0
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
+-..|+++++ .++.+|+ .+ .++|+.|++.++. ++.++ . .+++|++|+++++ +++.+|.
T Consensus 202 ~~~~LdLs~~-~LtsLP~-~l---~~~L~~L~L~~N~-Lt~LP---------~---lp~~Lk~LdLs~N-~LtsLP~--- 259 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPD-CL---PAHITTLVIPDNN-LTSLP---------A---LPPELRTLEVSGN-QLTSLPV--- 259 (788)
T ss_pred CCcEEEcCCC-CCCcCCc-ch---hcCCCEEEccCCc-CCCCC---------C---CCCCCcEEEecCC-ccCcccC---
Confidence 3566777776 4666643 22 2368888887653 55441 1 2578888888775 5666553
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
.+++|++|++.+|. +.... ..+++|+.|++++|.. +.++. ..++|+.|.++++.
T Consensus 260 ---lp~sL~~L~Ls~N~-L~~Lp------~lp~~L~~L~Ls~N~L-t~LP~---------------~p~~L~~LdLS~N~ 313 (788)
T PRK15387 260 ---LPPGLLELSIFSNP-LTHLP------ALPSGLCKLWIFGNQL-TSLPV---------------LPPGLQELSVSDNQ 313 (788)
T ss_pred ---cccccceeeccCCc-hhhhh------hchhhcCEEECcCCcc-ccccc---------------cccccceeECCCCc
Confidence 24678888887764 33211 1235677777777642 22111 12467777776654
Q ss_pred CCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhh
Q 004225 167 ASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIA 246 (767)
Q Consensus 167 ~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 246 (767)
..........++.|.+.++. ++.+. ..+.+|++|+++++ .+..++. .+++|+.|+++++ .+..++.
T Consensus 314 L~~Lp~lp~~L~~L~Ls~N~-L~~LP----~lp~~Lq~LdLS~N-~Ls~LP~---lp~~L~~L~Ls~N-~L~~LP~---- 379 (788)
T PRK15387 314 LASLPALPSELCKLWAYNNQ-LTSLP----TLPSGLQELSVSDN-QLASLPT---LPSELYKLWAYNN-RLTSLPA---- 379 (788)
T ss_pred cccCCCCcccccccccccCc-ccccc----ccccccceEecCCC-ccCCCCC---CCcccceehhhcc-ccccCcc----
Confidence 32111112345566665543 44431 12357888888774 4444432 2467888888764 4555432
Q ss_pred hccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccc
Q 004225 247 KTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSE 326 (767)
Q Consensus 247 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~ 326 (767)
..++|+.|+++++. ++.++.. .++|+.|+++++ .++.++. .+.+|+.|+++++ .++.+|.
T Consensus 380 -l~~~L~~LdLs~N~-Lt~LP~l-----------~s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~N-qLt~LP~ 439 (788)
T PRK15387 380 -LPSGLKELIVSGNR-LTSLPVL-----------PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPE 439 (788)
T ss_pred -cccccceEEecCCc-ccCCCCc-----------ccCCCEEEccCC-cCCCCCc-----chhhhhhhhhccC-cccccCh
Confidence 24578888888764 5555421 467888888886 3666653 2356788888776 5777777
Q ss_pred cCCCCcccchhhcccc
Q 004225 327 GKLSTPKLHKVERHGE 342 (767)
Q Consensus 327 ~~~~~~~L~~l~i~~~ 342 (767)
.....+.++.+++++.
T Consensus 440 sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 440 SLIHLSSETTVNLEGN 455 (788)
T ss_pred HHhhccCCCeEECCCC
Confidence 6555667777777663
No 60
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.88 E-value=6.2e-11 Score=121.84 Aligned_cols=323 Identities=13% Similarity=0.160 Sum_probs=149.2
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccc--ccc
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFT--SFC 82 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~ 82 (767)
++.++.|.|... ++..+|.. ...+.+|++|.+..+. +..+ ...+..+|+|+.+.+.+. +|+ .+|
T Consensus 31 Mt~~~WLkLnrt-~L~~vPeE--L~~lqkLEHLs~~HN~-L~~v---------hGELs~Lp~LRsv~~R~N-~LKnsGiP 96 (1255)
T KOG0444|consen 31 MTQMTWLKLNRT-KLEQVPEE--LSRLQKLEHLSMAHNQ-LISV---------HGELSDLPRLRSVIVRDN-NLKNSGIP 96 (1255)
T ss_pred hhheeEEEechh-hhhhChHH--HHHHhhhhhhhhhhhh-hHhh---------hhhhccchhhHHHhhhcc-ccccCCCC
Confidence 557788888774 46665322 2467778888877654 3333 245556777777766542 333 233
Q ss_pred CCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCccccccccc-C----------C-CcchhcchhhH
Q 004225 83 TGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYH-L----------G-DERTILSLGDF 150 (767)
Q Consensus 83 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~----------~-~~~~~~~~~~~ 150 (767)
.. ++.+.-|..|+++... ++..... + -.-.++-.|.++.++.- .+|. + . ...-...+.-.
T Consensus 97 ~d---iF~l~dLt~lDLShNq-L~EvP~~-L--E~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ 168 (1255)
T KOG0444|consen 97 TD---IFRLKDLTILDLSHNQ-LREVPTN-L--EYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQ 168 (1255)
T ss_pred ch---hcccccceeeecchhh-hhhcchh-h--hhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHH
Confidence 32 5666677777765432 2211111 0 02244455555544321 1110 0 0 00000011112
Q ss_pred hhhccccceeeecCCCC-CCCcccccCCceeeeeecccccch---hhccccccccccEEEecCCCccccccCCCCcCCCC
Q 004225 151 LQRLHTMKVLQIGGYSA-SLPYEKVENGMWVEIREAFHLEHI---LIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNL 226 (767)
Q Consensus 151 ~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~i~~~~~l~~~---~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L 226 (767)
+.++..|+.|.+++.+. .+-+..++++++|.+-..++-+.- ++.....+.+|..+++ +|+++..++.-...+++|
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl-S~N~Lp~vPecly~l~~L 247 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL-SENNLPIVPECLYKLRNL 247 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc-cccCCCcchHHHhhhhhh
Confidence 44445555555555543 222222333333222222221111 0111122344444444 233333333334455556
Q ss_pred CEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCC-CcccccCCC---
Q 004225 227 TNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLE-RLTSFCSGN--- 302 (767)
Q Consensus 227 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~--- 302 (767)
+.|++++.. ++.+... .+...+|++|++++. +++.+|..... +++|++|++.+-. ..+.+|++.
T Consensus 248 rrLNLS~N~-iteL~~~--~~~W~~lEtLNlSrN-QLt~LP~avcK--------L~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 248 RRLNLSGNK-ITELNMT--EGEWENLETLNLSRN-QLTVLPDAVCK--------LTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred heeccCcCc-eeeeecc--HHHHhhhhhhccccc-hhccchHHHhh--------hHHHHHHHhccCcccccCCccchhhh
Confidence 666665532 3322111 122344555555542 24444444333 6777777665421 222233210
Q ss_pred ------------------ccccCCccceEeecCCCCcccccccCCCCcccchhhccccchh-------------hh---c
Q 004225 303 ------------------CAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHGEACW-------------AW---K 348 (767)
Q Consensus 303 ------------------~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~~~~~-------------~~---~ 348 (767)
..-.|+.|+.|.+ +|..|..+|..+-.++-|+.+++...+++ .| |
T Consensus 316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hhhHHHHhhccccccCchhhhhhHHHHHhcc-cccceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 0124677888877 46667678877666666777777652222 22 5
Q ss_pred ccchHHHHhhcCHHH
Q 004225 349 DDLNTTIQKLVSLPG 363 (767)
Q Consensus 349 ~~~~~~~~~~~~i~~ 363 (767)
+..+.+.+-.|+.|.
T Consensus 395 FSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 395 FSLQHQLRLAGQMPA 409 (1255)
T ss_pred eehhhHHhhccCCcc
Confidence 666666666665554
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.1e-06 Score=88.46 Aligned_cols=332 Identities=15% Similarity=0.141 Sum_probs=239.6
Q ss_pred cCHHHHHhhhcCC-CHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCC-CCHHHHHHHHHHHHHHHh-h------
Q 004225 359 VSLPGMLAGVWSD-DSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRE-DNPQLQLEAARALTNIAS-E------ 429 (767)
Q Consensus 359 ~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~-~------ 429 (767)
+.|++|+..+.+. -++.+..|+..|..++...+..+.. -+++.|++.|+.+ .++++...|..++.++.. +
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence 3588898888754 4688999999999888555555444 4578888888765 358999999999999988 2
Q ss_pred -hh-----------HH-HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCc-hhHHHHHh-cCCHHHHHHHHccCCC
Q 004225 430 -NT-----------NV-VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSP-RDRDLVLS-EKALIPLLAQLNKHAK 494 (767)
Q Consensus 430 -~~-----------~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~ 494 (767)
.. +. +...+.|..++.+++..|-.||..++..+.++.+..+ +.++.++. .-+|..++.++ .+..
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-~Dsr 179 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-RDSR 179 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-hhhh
Confidence 11 12 2256788999999999999999999999999886555 45555443 45899999999 7888
Q ss_pred hHHHHHHHHHHHhhcCCCCCC-CccchhchHHHHHHHhcCC---C-HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHH
Q 004225 495 PSMLRNATKTLSRFCQGKPEP-PFDQVRPALPALAQLVHSN---D-NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRL 569 (767)
Q Consensus 495 ~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~i~~L~~ll~~~---~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 569 (767)
..+|-.++..|..+..+.+.. +.+....+...|..++... | .-|..+|+..+.|+..++..+...+.+.+.+|.|
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL 259 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL 259 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence 889999999999999998554 5566788999999999733 3 4678899999999999988888888899999999
Q ss_pred HHHhcCCCCCC-cccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc-CC-----HHHHHHHHHcCCHHHHHHHHh
Q 004225 570 VKLLLHPLPFP-FGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA-GN-----REQIQVVIDAGVIGPLVDLLQ 642 (767)
Q Consensus 570 ~~lL~~~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~-~~-----~~~~~~~~~~~~i~~L~~ll~ 642 (767)
.++|......+ ++...+-.-+.|+ ..|+.++..++. ++ ....+.+...+++..|..++.
T Consensus 260 ~klL~~f~~~d~Ev~~W~~Qrv~Nv--------------~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~ 325 (970)
T KOG0946|consen 260 LKLLSVFEFGDGEVFGWSTQRVQNV--------------IEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILM 325 (970)
T ss_pred HhhcCcccccCcccccccHHHHHHH--------------HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHc
Confidence 99987643311 2222222212222 345555555554 21 223346678899999999988
Q ss_pred cC--CchhHHHHHHHHHHhhcCCCHHHHHHHHHcC----------ChHHHHhhhcC-CCHHHHHHHHHHHHHHHHhhh
Q 004225 643 NA--EFFTKKEAARAISNAISGGTHEQIKYLVRKG----------CIKPLCDLLLY-ADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 643 ~~--~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~----------~i~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~ 707 (767)
++ ..+|+.++..++++++.+ +...-..+.+.. ++-.++.+..+ .....|.++..++..+.....
T Consensus 326 ~~~vp~dIltesiitvAevVRg-n~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 326 HPGVPADILTESIITVAEVVRG-NARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred CCCCcHhHHHHHHHHHHHHHHh-chHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 77 358999999999999997 444444444421 12224444444 356788888999888886433
No 62
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1e-06 Score=94.28 Aligned_cols=215 Identities=17% Similarity=0.193 Sum_probs=144.4
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDG 437 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~ 437 (767)
.+|.++......|.+.+.-.-.++.+.+ ..+...+ +.++.+++-..+++ +.+|..|.+.++.+-- ...+
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~---~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~~i~e----- 120 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI---LAVNTFLKDCEDPN-PLIRALALRTMGCLRVDKITE----- 120 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH---hhhhhhhccCCCCC-HHHHHHHhhceeeEeehHHHH-----
Confidence 4788899999999888888889999988 4444333 45788888888888 9999988887766543 2222
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCC-CC
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPE-PP 516 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~-~~ 516 (767)
.+...+...+++.++.+|..|+.+..++-..++ +.+.+.|.++.|-.++ .+.++.+..+|+.++..+....+. ..
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 245788999999999999999999999986655 4577899999999999 789999999999999999987753 33
Q ss_pred ccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 517 FDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 517 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
.......+..++..+..-++--+...+.++.+-...++.... .++..+...+.+.+. .+...+...+.++.
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~--avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANS--AVVLSAVKVILQLV 267 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCc--ceEeehHHHHHHHH
Confidence 333344444444444443333343444444333322221111 133444444444444 44444444444443
No 63
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=2.7e-09 Score=121.50 Aligned_cols=275 Identities=22% Similarity=0.276 Sum_probs=165.6
Q ss_pred CCCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccccccccc
Q 004225 3 CGIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFC 82 (767)
Q Consensus 3 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (767)
.++|.|++|+|++|..+..+|.. ++.+-+|++|++++.. +.++ |.++..+.+|.+|++.....+..++
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~t~-I~~L---------P~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSDTG-ISHL---------PSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccCCC-cccc---------chHHHHHHhhheecccccccccccc
Confidence 46899999999999999988533 3689999999998875 5555 6777889999999999988887774
Q ss_pred CCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccc----
Q 004225 83 TGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMK---- 158 (767)
Q Consensus 83 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---- 158 (767)
.. ...+++||.|.+..-. .............+.+|+.|.+..+.. .+.+.+..++.|.
T Consensus 636 ~i---~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~--------------~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 636 GI---LLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSV--------------LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred ch---hhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchh--------------HhHhhhhhhHHHHHHhH
Confidence 32 3458999999986543 111110001112455555555543221 0111112222222
Q ss_pred eeeecCCCC---CCCcccccCCceeeeeecccccchh--hccccc---cccccEEEecCCCccccccCCCCcCCCCCEEE
Q 004225 159 VLQIGGYSA---SLPYEKVENGMWVEIREAFHLEHIL--IRESSV---TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMV 230 (767)
Q Consensus 159 ~L~l~~~~~---~~~~~~~~~l~~l~i~~~~~l~~~~--~~~~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~ 230 (767)
.+.+.++.. ......+.+++.|.|.+|...+... ...... ++++..+.+.+|....... .....|+|+.|.
T Consensus 698 ~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~-~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 698 SLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT-WLLFAPHLTSLS 776 (889)
T ss_pred hhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc-hhhccCcccEEE
Confidence 333322222 3344567899999999998765432 111111 3467777777787766532 234679999999
Q ss_pred eccCccchhhcCchhhhccccCcEEe-----------EccccccchhccccccccccccccccccceEeecCCCCccccc
Q 004225 231 VSRCNNLKIVLTSLIAKTLVRLRYMK-----------IKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFC 299 (767)
Q Consensus 231 l~~c~~l~~~~~~~~~~~l~~L~~L~-----------i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 299 (767)
+..|+.+++..+.. ..+..++.+. +.+.+.+.++..... .+++|..+.+..||++..
T Consensus 777 l~~~~~~e~~i~~~--k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l--------~~~~l~~~~ve~~p~l~~-- 844 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKL--KALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL--------SFLKLEELIVEECPKLGK-- 844 (889)
T ss_pred EecccccccCCCHH--HHhhhcccEEecccccccceeeecCCCCceeEeccc--------CccchhheehhcCccccc--
Confidence 99999999886542 2344444322 222222222211111 145566666666666654
Q ss_pred CCCccccCCccceEeecCC-CCccccccc
Q 004225 300 SGNCAFKFPSLERLVVDDC-PDMKIFSEG 327 (767)
Q Consensus 300 ~~~~~~~~~~L~~L~i~~c-~~l~~~~~~ 327 (767)
+|.+.++.+.+| +.+...|.+
T Consensus 845 -------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 845 -------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred -------CccccccceeccccceeecCCc
Confidence 466778888887 677776654
No 64
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=9.1e-07 Score=93.93 Aligned_cols=333 Identities=14% Similarity=0.138 Sum_probs=234.6
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHHhcCCc------
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSS--PSDDVREKAVWALGNIARSSP------ 470 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~------ 470 (767)
-|+.|++-+.+..-++-|+.|++.|..+++.+|..+...| ++.|++.|+. .|+++...++.++.++....+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~d 101 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMD 101 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcc
Confidence 4677777777666578899999999999998888887654 8899999976 689999999999999986542
Q ss_pred h----------hHHHH-HhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC---CccchhchHHHHHHHhcCCCH
Q 004225 471 R----------DRDLV-LSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP---PFDQVRPALPALAQLVHSNDN 536 (767)
Q Consensus 471 ~----------~~~~~-~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~---~~~~~~~~i~~L~~ll~~~~~ 536 (767)
+ ..+++ ...+.|..++..+ ...|-.+|..++..+.++....+.. .......+|..++.++.+..+
T Consensus 102 ds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 102 DSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred cchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence 1 12233 3457899999999 8889999999999999998776433 222345789999999999999
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhh
Q 004225 537 DVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISN 616 (767)
Q Consensus 537 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~n 616 (767)
.+|-.++..|..++..++...+.+.=.+++..|..++......+. . -|...++..+-|
T Consensus 181 ~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dG----------------g------IVveDCL~ll~N 238 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDG----------------G------IVVEDCLILLNN 238 (970)
T ss_pred hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCC----------------c------chHHHHHHHHHH
Confidence 999999999999998887655544445789999999987642000 0 245666777788
Q ss_pred hccCCHHHHHHHHHcCCHHHHHHHHhcC---Cc--------h--hHHHHHHHHHHhhcCCCHHH----H-HHHHHcCChH
Q 004225 617 ITAGNREQIQVVIDAGVIGPLVDLLQNA---EF--------F--TKKEAARAISNAISGGTHEQ----I-KYLVRKGCIK 678 (767)
Q Consensus 617 l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~--------~--v~~~a~~~L~nl~~~~~~~~----~-~~l~~~~~i~ 678 (767)
+...+......+.+.+.+|.|..+|... +. + -...|..++.-++..++... . ..+.+.+++.
T Consensus 239 LLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~ 318 (970)
T KOG0946|consen 239 LLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLD 318 (970)
T ss_pred HHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHH
Confidence 8887777788888999999999887632 21 1 13345566666666553322 2 3456689999
Q ss_pred HHHhhhcCC--CHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhc------hHHHHHHHh-cCCChHHHHH
Q 004225 679 PLCDLLLYA--DPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAE------GFKKIEDLK-RHDSNGICEK 749 (767)
Q Consensus 679 ~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g------~~~~l~~l~-~~~~~~v~~~ 749 (767)
.|+.++-++ -.+|+..++-++..+++.....+ +.++..-.-.+ .+-.+..+. ....+..|-.
T Consensus 319 ~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ---------~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcA 389 (970)
T KOG0946|consen 319 VLCTILMHPGVPADILTESIITVAEVVRGNARNQ---------DEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCA 389 (970)
T ss_pred HHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHH---------HHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHH
Confidence 999988765 34889999999999987533211 11111111111 011222223 3456778888
Q ss_pred HHHHHHHhcCCCccc
Q 004225 750 AVKILEIYWSCGVIG 764 (767)
Q Consensus 750 a~~~l~~~~~~~~~~ 764 (767)
+.-+++.|+-..+-+
T Consensus 390 v~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 390 VLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHhcchhh
Confidence 888888876554433
No 65
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=7e-09 Score=104.72 Aligned_cols=305 Identities=13% Similarity=0.058 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCC
Q 004225 417 LEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHA 493 (767)
Q Consensus 417 ~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 493 (767)
.+++.+|..+++ -.|..+.+..+++.|+++|++++..+...+...++|........+..+++.|++..+++++ .+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-MSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-hcc
Confidence 344555555555 4567788889999999999999988889999999999988888889999999999999999 788
Q ss_pred ChHHHHHHHHHHHhhcCCC-CCCCc-cchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhH---HHHHHhc----C
Q 004225 494 KPSMLRNATKTLSRFCQGK-PEPPF-DQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDK---IQAVIEA----D 564 (767)
Q Consensus 494 ~~~~~~~~~~~L~~l~~~~-~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~----~ 564 (767)
|..+|.+..|.+..+..+. ...+. ....-++..++.+.++++..+++.++.++.|++.....+ ...+... -
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 9999999999999988776 23232 234456788899999999999999999999998743221 1111111 1
Q ss_pred cHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHH-cCCHHHHHHHHhc
Q 004225 565 VCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVID-AGVIGPLVDLLQN 643 (767)
Q Consensus 565 ~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~ 643 (767)
....+++-++..++ -...+.++++.++++.+....+.+++ ..++..+.++|..
T Consensus 566 lfk~l~~k~e~~np--------------------------~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e 619 (743)
T COG5369 566 LFKRLIDKYEENNP--------------------------MEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDE 619 (743)
T ss_pred HHHHHHHHHHhcCc--------------------------hhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHH
Confidence 44566666666666 33455677777777765555555443 3445555555432
Q ss_pred CC-----------chhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc----CCCHHHHHHHHHHHHHHHHhhhh
Q 004225 644 AE-----------FFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL----YADPEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 644 ~~-----------~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~v~~~al~aL~~l~~~~~~ 708 (767)
.. ..+-.--..+..++... +.+..+.+.-. +++ +..+ ++|.++-.+..|.+.++....+.
T Consensus 620 ~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~-~d~f~r~~~~~---p~~-D~~~~d~~~~NdE~~~agiw~~in~~w~~~~ 694 (743)
T COG5369 620 FAGRTPLSPGSKEEHVLLPISYTIVNLSEN-SDKFKRLVLTT---PHL-DNMKKDSTTRNDELSIAGIWIIINLSWKEDG 694 (743)
T ss_pred HcccCCCCCCCCcccccCccceeeeccccc-ccccccceecC---CCc-cccccccCCCchhhhhccceEEEecccCccC
Confidence 11 11111111122222221 00100000000 111 1222 34667888899999997765444
Q ss_pred hhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 709 EMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 709 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
..... ...+.+.++.+.|..+.++.++.++++.|++++..+|..+
T Consensus 695 ~~vtr----atveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 695 SEVTR----ATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred Cccch----hhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 33222 4457889999999999999999999999999999999765
No 66
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.3e-07 Score=87.06 Aligned_cols=191 Identities=17% Similarity=0.139 Sum_probs=157.4
Q ss_pred cCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHH
Q 004225 491 KHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLV 570 (767)
Q Consensus 491 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 570 (767)
.+.+.+-++.|+.-|..++.+-.+.......|++..++..+++++..+|+.|+|+++..+.+++.....+++.++.+.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 34466777778888888877766666666667777777799999999999999999999999999888899999999999
Q ss_pred HHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhc--CCchh
Q 004225 571 KLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQN--AEFFT 648 (767)
Q Consensus 571 ~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v 648 (767)
..+.+.++ . .++..|+++++.+..+.+.....+...++...|...+++ .+...
T Consensus 173 ~~ls~~~~--~-----------------------~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~l 227 (342)
T KOG2160|consen 173 KILSSDDP--N-----------------------TVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKL 227 (342)
T ss_pred HHHccCCC--c-----------------------hHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHH
Confidence 99997765 2 667888888998889888888889998999999999998 56788
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 004225 649 KKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 649 ~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 707 (767)
+..|+..+..+... .......+...++...+..+....+.++.+.++.++........
T Consensus 228 krK~~~Ll~~Ll~~-~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 228 KRKALFLLSLLLQE-DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHHHHHHHHHHHHh-hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 99999999999886 33444444556777788888888899999999998888876443
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.5e-06 Score=91.50 Aligned_cols=217 Identities=17% Similarity=0.164 Sum_probs=161.7
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCCh
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAV 440 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l 440 (767)
-+.++.+|.+.-+.++..|...+.+++-...+++. ..+|.|++-|.++| |.++.+|+.++..+|+.+.+-.+ ..-
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr--~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL--~LA 220 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR--PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL--QLA 220 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh--hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc--ccc
Confidence 56778899999999999999999998833333332 24799999999999 99999999999999994433333 356
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhh--cCCCCCCCc
Q 004225 441 PIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRF--CQGKPEPPF 517 (767)
Q Consensus 441 ~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l--~~~~~~~~~ 517 (767)
|.+.+++.. .|.-+....+..+++++--.|...+. .++++.+++.+..--.+...|+.++... +.+.+ ...
T Consensus 221 P~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~-d~~ 294 (877)
T KOG1059|consen 221 PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS-DHS 294 (877)
T ss_pred HHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC-CcH
Confidence 888888865 55566677889999999766654433 6789999994333345555666665433 33321 234
Q ss_pred cchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhc
Q 004225 518 DQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~ 595 (767)
...+-++.-|-.++.++|++++.-.+-+++.+....+...++ --..+++.|.+.|+ .++..|+..+.-+..
T Consensus 295 asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~--SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 295 ASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDE--SIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCc--hhHHHHHHHHHHHhh
Confidence 445567777888888999999999999999999887766654 34668889999998 999999998887764
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.82 E-value=9.4e-08 Score=106.28 Aligned_cols=192 Identities=16% Similarity=0.146 Sum_probs=117.5
Q ss_pred HHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHH--HHHHHhcCCCH-H
Q 004225 461 ALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALP--ALAQLVHSNDN-D 537 (767)
Q Consensus 461 ~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~--~L~~ll~~~~~-~ 537 (767)
+++++...+++..+.+++.|++..+...+......+++..++..+.|++...+..........+. .+..++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 88899999999999999999999999999767888999999999999997764433333322222 33334444443 6
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhh
Q 004225 538 VLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNI 617 (767)
Q Consensus 538 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl 617 (767)
.-..++.+++.+....++.........+-..+++....-..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~--------------------------------------- 614 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLT--------------------------------------- 614 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCc---------------------------------------
Confidence 77777777777775543311111111122222222222111
Q ss_pred ccCCHHHHHHHHHcCCHHH-HHHHHh-cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC-CCHHHHHH
Q 004225 618 TAGNREQIQVVIDAGVIGP-LVDLLQ-NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY-ADPEIVTI 694 (767)
Q Consensus 618 ~~~~~~~~~~~~~~~~i~~-L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~ 694 (767)
.... ......+.. +..++. +..+..+..|.|++.+++.. +++..+.+.+.+++..+.+.-.. ...++...
T Consensus 615 -----~~~~-~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (699)
T KOG3665|consen 615 -----SEIR-VINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQ-NKEYCKLVRESNGFELIENIRVLSEVVDVKEE 687 (699)
T ss_pred -----ccee-ehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHc-ChhhhhhhHhccchhhhhhcchhHHHHHHHHH
Confidence 0011 111122222 444454 45678899999999999987 56677777788888887765432 23334444
Q ss_pred HHHH
Q 004225 695 CLKG 698 (767)
Q Consensus 695 al~a 698 (767)
+...
T Consensus 688 ~~~~ 691 (699)
T KOG3665|consen 688 AVLV 691 (699)
T ss_pred HHHH
Confidence 4333
No 69
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.82 E-value=3.3e-08 Score=110.29 Aligned_cols=234 Identities=18% Similarity=0.162 Sum_probs=153.1
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCC
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGD 85 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 85 (767)
++|+.|++.++ .++.+|. ..++|++|+++++ +++.++. .+++|++|++.++. +..++.
T Consensus 222 ~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~------------lp~sL~~L~Ls~N~-L~~Lp~-- 279 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV------------LPPGLLELSIFSNP-LTHLPA-- 279 (788)
T ss_pred cCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccC------------cccccceeeccCCc-hhhhhh--
Confidence 46999999985 5777752 3678999999987 4665521 25789999998864 655553
Q ss_pred CcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCC
Q 004225 86 LDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGY 165 (767)
Q Consensus 86 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (767)
.+.+|+.|++.+|. ++.. + ..+++|+.|++++|.. ..++.. ..+|+.|.+.++
T Consensus 280 ----lp~~L~~L~Ls~N~-Lt~L-----P-~~p~~L~~LdLS~N~L-~~Lp~l---------------p~~L~~L~Ls~N 332 (788)
T PRK15387 280 ----LPSGLCKLWIFGNQ-LTSL-----P-VLPPGLQELSVSDNQL-ASLPAL---------------PSELCKLWAYNN 332 (788)
T ss_pred ----chhhcCEEECcCCc-cccc-----c-ccccccceeECCCCcc-ccCCCC---------------cccccccccccC
Confidence 24688899998874 3332 1 2357899999998753 222221 124556666655
Q ss_pred CCC-CCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCch
Q 004225 166 SAS-LPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSL 244 (767)
Q Consensus 166 ~~~-~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 244 (767)
... +| .....|+.|.++++ ++..+. ..+++|..|++.+. .+..++. .+++|+.|+++++. ++.++.
T Consensus 333 ~L~~LP-~lp~~Lq~LdLS~N-~Ls~LP----~lp~~L~~L~Ls~N-~L~~LP~---l~~~L~~LdLs~N~-Lt~LP~-- 399 (788)
T PRK15387 333 QLTSLP-TLPSGLQELSVSDN-QLASLP----TLPSELYKLWAYNN-RLTSLPA---LPSGLKELIVSGNR-LTSLPV-- 399 (788)
T ss_pred cccccc-ccccccceEecCCC-ccCCCC----CCCcccceehhhcc-ccccCcc---cccccceEEecCCc-ccCCCC--
Confidence 431 11 11246788888774 355541 12467888888763 3444332 24689999998864 555542
Q ss_pred hhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 245 IAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 245 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
..++|+.|+++++. +..++.. +.+|+.|++++. +++.+|.. ...+++|+.|++.+++
T Consensus 400 ---l~s~L~~LdLS~N~-LssIP~l-----------~~~L~~L~Ls~N-qLt~LP~s--l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 ---LPSELKELMVSGNR-LTSLPML-----------PSGLLSLSVYRN-QLTRLPES--LIHLSSETTVNLEGNP 456 (788)
T ss_pred ---cccCCCEEEccCCc-CCCCCcc-----------hhhhhhhhhccC-cccccChH--HhhccCCCeEECCCCC
Confidence 24679999999875 6666531 457888888873 57777743 4568999999999885
No 70
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.81 E-value=3.1e-07 Score=91.43 Aligned_cols=275 Identities=16% Similarity=0.150 Sum_probs=196.4
Q ss_pred CCChHHHHhcCchHHHHhhccCCC-CHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 004225 388 LPPSEKVIQSGVVARFVEFLTRED-NPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGN 464 (767)
Q Consensus 388 ~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~n 464 (767)
..-.+.+...|++..|+.++..++ ...++.+|++.|-.+.. ++++.++..| +..++.+.+. .-++.+...+.+|++
T Consensus 170 q~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 170 QGLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred HhhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 444567778899999999999887 23569999999999999 9999998877 5555555444 668889999999999
Q ss_pred HhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC--CCCCccchhchHHHHHHHhcCCCHHHHHHH
Q 004225 465 IARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK--PEPPFDQVRPALPALAQLVHSNDNDVLRYA 542 (767)
Q Consensus 465 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 542 (767)
+..++.+..+.++..|+++.++-.. ...++.+.++|+.+|+|++-.. ...+.+....+-.-|..+..+.|+-.+.+|
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 9999999889999999999998888 6777999999999999998776 334555666676777777777788889999
Q ss_pred HHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc-CC
Q 004225 543 CEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA-GN 621 (767)
Q Consensus 543 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~-~~ 621 (767)
|-+++.++.+.+ ....+.++|.+..+-.++...|+ . .++... ...+. ..
T Consensus 328 ClAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP--~----------~FARD~-----------------hd~aQG~~ 377 (832)
T KOG3678|consen 328 CLAVAVLATNKE-VEREVRKSGTLALVEPLVASLDP--G----------RFARDA-----------------HDYAQGRG 377 (832)
T ss_pred HHHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCc--c----------hhhhhh-----------------hhhhccCC
Confidence 999999987764 34446667777766667777666 1 011000 00001 01
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHHHHhhhcCCCHHHHHHHHHHHH
Q 004225 622 REQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQI-KYLVRKGCIKPLCDLLLYADPEIVTICLKGLE 700 (767)
Q Consensus 622 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~ 700 (767)
+ ..++.|+.+|++..-+.+..+++-++.=+.-.+.+.. ..+-+-|+++.|.++..++|.--..-|-.||.
T Consensus 378 ~---------d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt 448 (832)
T KOG3678|consen 378 P---------DDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT 448 (832)
T ss_pred h---------HHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1 2467788888877777776666655544332222222 23344689999999998877654444566665
Q ss_pred HHH
Q 004225 701 NIL 703 (767)
Q Consensus 701 ~l~ 703 (767)
-+-
T Consensus 449 viG 451 (832)
T KOG3678|consen 449 VIG 451 (832)
T ss_pred Hhc
Confidence 443
No 71
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.81 E-value=9.1e-07 Score=90.44 Aligned_cols=352 Identities=14% Similarity=0.148 Sum_probs=220.9
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhc---CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hh----hHHH-
Q 004225 364 MLAGVWSDDSGLQLEATTWFRKLL---LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-EN----TNVV- 434 (767)
Q Consensus 364 l~~~l~s~~~~~~~~a~~~L~~l~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~----~~~~- 434 (767)
..+.-++++.+++..|...|.++. ......+++.-+.......+++++ .++..+|......++. +. -..-
T Consensus 226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~~~ 304 (858)
T COG5215 226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDKYL 304 (858)
T ss_pred eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHhhc
Confidence 455667899999999999999988 444566677777777888888988 8999999999988877 11 0000
Q ss_pred -------------HhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc---c
Q 004225 435 -------------IDGGAVPIFVKLLSS-------PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN---K 491 (767)
Q Consensus 435 -------------~~~~~l~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~ 491 (767)
.-.+++|.|+.+|.. +|..+-..|..+|.-++.. ..+.+ +.+++.+.. +
T Consensus 305 pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i-----~~pVl~FvEqni~ 376 (858)
T COG5215 305 PEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKI-----MRPVLGFVEQNIR 376 (858)
T ss_pred ccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHh-----HHHHHHHHHHhcc
Confidence 012378999999965 2345666677777766632 11223 333444432 6
Q ss_pred CCChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHH
Q 004225 492 HAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLV 570 (767)
Q Consensus 492 ~~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 570 (767)
+++..-++.++.+++.+-.++ ..+.......++|.+...+.++.-.++..++|+++.++++-.+.+..- ..+.+..-
T Consensus 377 ~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~--~Hl~~~vs 454 (858)
T COG5215 377 SESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC--GHLVLEVS 454 (858)
T ss_pred CchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc--ccccHHHH
Confidence 788899999999999998876 444555677889999999988888899999999999987644322110 01111111
Q ss_pred HHhcCCCCCCcccchHHHHHhhhhccCCcceeeh----------------------------------------------
Q 004225 571 KLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT---------------------------------------------- 604 (767)
Q Consensus 571 ~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l---------------------------------------------- 604 (767)
..+..-..+..+..+..|..-|++++-.......
T Consensus 455 a~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~ 534 (858)
T COG5215 455 ASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA 534 (858)
T ss_pred HHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh
Confidence 1111100011555666666666654322211100
Q ss_pred ------------------------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCc-h
Q 004225 605 ------------------------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEF-F 647 (767)
Q Consensus 605 ------------------------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~ 647 (767)
+++.+-+..+..+....+..++.+ +..++..++++|++.++ -
T Consensus 535 V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~t~ 613 (858)
T COG5215 535 VSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKPTT 613 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCCch
Confidence 222222222222222111111100 11245667777777744 4
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHH
Q 004225 648 TKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVE 727 (767)
Q Consensus 648 v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 727 (767)
+-..+..++++++..-. ++. ...-..++++|.+-++..+..+...|...+..+....+. .+++|+..+
T Consensus 614 ~~~dV~~aIsal~~sl~-e~F-e~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~---------df~~y~d~~- 681 (858)
T COG5215 614 AFGDVYTAISALSTSLE-ERF-EQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGT---------DFNIYADVL- 681 (858)
T ss_pred hhhHHHHHHHHHHHHHH-HHH-HHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHH-
Confidence 56667788888887522 222 223456999999999999999999999999999876544 567788888
Q ss_pred hhchHHHHHHHhcCCC
Q 004225 728 AAEGFKKIEDLKRHDS 743 (767)
Q Consensus 728 ~~g~~~~l~~l~~~~~ 743 (767)
+..|.+.+.++.
T Consensus 682 ----ms~LvQ~lss~~ 693 (858)
T COG5215 682 ----MSSLVQCLSSEA 693 (858)
T ss_pred ----HHHHHHHhcChh
Confidence 566777766643
No 72
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.77 E-value=4.8e-07 Score=89.69 Aligned_cols=272 Identities=16% Similarity=0.116 Sum_probs=192.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-CC-----ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-LP-----PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTN 432 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~-----~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~ 432 (767)
-+..+..+...+.-+...+...+..++ .. ..+.-+. ...|...+++.++++....|+++|..+.. ++|.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 455677888888888888888888888 11 1122222 23444555554446788889999999999 8899
Q ss_pred HHHhCCChHHHHHhhC-C-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcC
Q 004225 433 VVIDGGAVPIFVKLLS-S-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~-~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 510 (767)
.++..+++..++..+. . .+..++++.+.+++-++.. +...+.+...+.++.+..+++.+....+.+.++.++.|+..
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998999999999883 3 6789999999999999966 55556677778999999999888889999999999999998
Q ss_pred CCCCCC-------ccchhchHHHHHHHhc---CCCHHHHHHHHHHHHhhc-------cC--------------Ch-----
Q 004225 511 GKPEPP-------FDQVRPALPALAQLVH---SNDNDVLRYACEALSCLS-------DG--------------TN----- 554 (767)
Q Consensus 511 ~~~~~~-------~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~-------~~--------------~~----- 554 (767)
..+... .+...++.+. ++.+. -+|+++..+.-..-..+. .. +|
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e 350 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSE 350 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccccc
Confidence 874321 1122333333 44443 235555544333322221 11 00
Q ss_pred ----hHHHHHHhc--CcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHH
Q 004225 555 ----DKIQAVIEA--DVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVV 628 (767)
Q Consensus 555 ----~~~~~~~~~--~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~ 628 (767)
++...+.+. .++..|+++|+..+. . .+..-||.-|+..+...|+.+..+
T Consensus 351 ~FW~eNa~rlnennyellkiL~~lLe~s~D--p-----------------------~iL~VAc~DIge~Vr~yP~gk~vv 405 (442)
T KOG2759|consen 351 KFWRENADRLNENNYELLKILIKLLETSND--P-----------------------IILCVACHDIGEYVRHYPEGKAVV 405 (442)
T ss_pred chHHHhHHHHhhccHHHHHHHHHHHhcCCC--C-----------------------ceeehhhhhHHHHHHhCchHhHHH
Confidence 223333322 366777777776653 1 445567778888888889999989
Q ss_pred HHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcC
Q 004225 629 IDAGVIGPLVDLLQNAEFFTKKEAARAISNAISG 662 (767)
Q Consensus 629 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~ 662 (767)
.+.|+=+.+++++.+.+++||.+|..|+..+..+
T Consensus 406 ~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 406 EKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999887654
No 73
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.72 E-value=6.2e-07 Score=91.68 Aligned_cols=231 Identities=19% Similarity=0.220 Sum_probs=162.2
Q ss_pred ChHHHHHhhCC--CCHHHHHHHHHHHHHHhcCCchhHHHHHh------cCCHHHHHHHHccCCChHHHHHHHHHHHhhcC
Q 004225 439 AVPIFVKLLSS--PSDDVREKAVWALGNIARSSPRDRDLVLS------EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 439 ~l~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 510 (767)
....++.+|+. .++++...++..+..+..+++...+.+.. .....++++++ ..+|..++..++..+..+..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 35556666654 68899999999999999888877766655 23688899977 78899999999999999998
Q ss_pred CCCCCCccchhchHHHHHHHhcC----CCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhc-----CCCCCCc
Q 004225 511 GKPEPPFDQVRPALPALAQLVHS----NDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLL-----HPLPFPF 581 (767)
Q Consensus 511 ~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-----~~~~~~~ 581 (767)
..+........++++.++..+.+ ++.+.+..++.++.++.... .....+.+.++++.+..++. +... .
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~--~ 211 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSS--G 211 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH-----------H
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCC--c
Confidence 87666555446677777777664 45677889999999998664 56666888899999999992 2221 0
Q ss_pred ccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC-CchhHHHHHHHHHHhh
Q 004225 582 GLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA-EFFTKKEAARAISNAI 660 (767)
Q Consensus 582 v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~nl~ 660 (767)
+.+..+++.+++-++-. ++..+.+.+.++++.+.++++.. ..+|.+-+..++.|++
T Consensus 212 ----------------------~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 212 ----------------------IQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred ----------------------hhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 05566677777766664 66777788888999999999854 6799999999999999
Q ss_pred cCCCHHHHHHHHHcCChHHHHhhhcC--CCHHHHHHHH
Q 004225 661 SGGTHEQIKYLVRKGCIKPLCDLLLY--ADPEIVTICL 696 (767)
Q Consensus 661 ~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al 696 (767)
.......+..|+..|+++.+-.+... .|+++.+..-
T Consensus 269 ~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 269 SKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp SSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred hccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 87555577888888877777766653 5888766543
No 74
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.61 E-value=7.7e-07 Score=91.00 Aligned_cols=236 Identities=17% Similarity=0.184 Sum_probs=162.0
Q ss_pred CHHHHHHHHccC-CChHHHHHHHHHHHhhcCCCCCCCccchh-------chHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 481 ALIPLLAQLNKH-AKPSMLRNATKTLSRFCQGKPEPPFDQVR-------PALPALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 481 ~i~~L~~ll~~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~~-------~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
....+++++... .+.++++.++..+..+..+++........ .....+++++.++|..++..++.++..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 466777777655 78999999999999999888654333321 2567777888999999999999999999877
Q ss_pred ChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcC
Q 004225 553 TNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAG 632 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~ 632 (767)
.+....... .+.++.+++.+.+.-. . ++. +....|+.+++++.. .+..+..+.+.+
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~--~---------------~~~-----~~~~~av~~L~~LL~-~~~~R~~f~~~~ 191 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLS--S---------------SDS-----ELQYIAVQCLQNLLR-SKEYRQVFWKSN 191 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT---H---------------HHH--------HHHHHHHHHHHT-SHHHHHHHHTHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhc--C---------------CCc-----chHHHHHHHHHHHhC-cchhHHHHHhcC
Confidence 655444322 3466777777766322 0 000 344556667777664 477888888999
Q ss_pred CHHHHHHHH------h-cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC-CCHHHHHHHHHHHHHHHH
Q 004225 633 VIGPLVDLL------Q-NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY-ADPEIVTICLKGLENILK 704 (767)
Q Consensus 633 ~i~~L~~ll------~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~aL~~l~~ 704 (767)
+++.+..++ . .....++.+++.++.-++. +++.+..+.+.++++.|.++++. ...+|...++.++.|++.
T Consensus 192 ~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 192 GVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 999999999 2 2245889999999998887 58898999999999999999984 688999999999999997
Q ss_pred hhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC--CChHHHHHHHHHH
Q 004225 705 VGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH--DSNGICEKAVKIL 754 (767)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~--~~~~v~~~a~~~l 754 (767)
.... .....+...|+++.+..+... .|+++.+-...+-
T Consensus 270 ~~~~------------~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 270 KAPK------------SNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp SSST------------THHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred ccHH------------HHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 5432 156667789999999999765 6788886555443
No 75
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.60 E-value=1.1e-08 Score=104.98 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=49.9
Q ss_pred ccccccEEEecCCCcc---ccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccc
Q 004225 198 VTNNLVILRVKGCDHL---VNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVA 274 (767)
Q Consensus 198 ~~~~L~~L~i~~~~~~---~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 274 (767)
.+.+|++|++++..-. ++.......+++|++|.+.+. +++.++.-. +.++++||+|++.+.. +.++-.+...
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krA-fsgl~~LE~LdL~~Na-iaSIq~nAFe-- 437 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRA-FSGLEALEHLDLGDNA-IASIQPNAFE-- 437 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhh-hccCcccceecCCCCc-ceeecccccc--
Confidence 3677888887653221 222222345788888888774 577775544 3568888888887755 4444333321
Q ss_pred ccccccccccceEeecC
Q 004225 275 KDEVITFRELKELKLVD 291 (767)
Q Consensus 275 ~~~~~~~~~L~~L~l~~ 291 (767)
.+ .||+|.+..
T Consensus 438 -----~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 438 -----PM-ELKELVMNS 448 (873)
T ss_pred -----cc-hhhhhhhcc
Confidence 03 777777654
No 76
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=9.7e-05 Score=70.86 Aligned_cols=333 Identities=13% Similarity=0.156 Sum_probs=216.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc--CC-----ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhh
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL--LP-----PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENT 431 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~-----~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~ 431 (767)
.|.+-..|..++..++..+++.+..+. +. ....++..|+.+.++.++..++ .++...|...+..++. ...
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHHHH
Confidence 677777888899999999999999888 22 1334568899999999999999 7999999999999998 566
Q ss_pred HHHHhCCChHHH--HHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhc
Q 004225 432 NVVIDGGAVPIF--VKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 432 ~~~~~~~~l~~L--~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 509 (767)
..+++......+ ..+-...+.-+|......+-.+.+-+++....+-..|.+..+..-+.-.+|.-++.+|+.....++
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 677766665543 333334566788888999999999999988888899999998888855578888999999999999
Q ss_pred CCCCCCCccchhchHHHHHHHhcC--CCHHHHHHHHHHHHhhccC------ChhH-HHHHHhcCcHHHHHHHhcCCCCCC
Q 004225 510 QGKPEPPFDQVRPALPALAQLVHS--NDNDVLRYACEALSCLSDG------TNDK-IQAVIEADVCPRLVKLLLHPLPFP 580 (767)
Q Consensus 510 ~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~------~~~~-~~~~~~~~~~~~L~~lL~~~~~~~ 580 (767)
.......+....|.|+.+.+++.. +++--.-.++.....+... .++. .+... -++....+.+..+|+
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnDp-- 318 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMNDP-- 318 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCCc--
Confidence 887778888899999999999973 4443333344444433222 1111 11111 245556667777888
Q ss_pred cccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCC--HHHHHH-HHhcCCchhHHHHHHHHH
Q 004225 581 FGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGV--IGPLVD-LLQNAEFFTKKEAARAIS 657 (767)
Q Consensus 581 ~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~--i~~L~~-ll~~~~~~v~~~a~~~L~ 657 (767)
+.+..|+.+++.+..+. +..+.+.+.|- ...++. ..+.....-+..+..+|.
T Consensus 319 daieaAiDalGilGSnt-------------------------eGadlllkTgppaaehllarafdqnahakqeaaihaLa 373 (524)
T KOG4413|consen 319 DAIEAAIDALGILGSNT-------------------------EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALA 373 (524)
T ss_pred hHHHHHHHHHHhccCCc-------------------------chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHH
Confidence 55555555555554322 22232333222 222222 222222223444556666
Q ss_pred HhhcCC--CH---------HHHHHHH-----Hc---CChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCcccc
Q 004225 658 NAISGG--TH---------EQIKYLV-----RK---GCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRY 718 (767)
Q Consensus 658 nl~~~~--~~---------~~~~~l~-----~~---~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~ 718 (767)
+++..- .+ +..+.++ +. +-......++..+.++++.+++..+..+.....
T Consensus 374 aIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPW----------- 442 (524)
T KOG4413|consen 374 AIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPW----------- 442 (524)
T ss_pred HhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcH-----------
Confidence 665321 11 1112221 11 334456667778899999999999888875322
Q ss_pred ccHHHHHHHhhchHHHHH
Q 004225 719 FNHYARLVEAAEGFKKIE 736 (767)
Q Consensus 719 ~~~~~~~l~~~g~~~~l~ 736 (767)
....++...|+++.+.
T Consensus 443 --alkeifakeefieiVt 458 (524)
T KOG4413|consen 443 --ALKEIFAKEEFIEIVT 458 (524)
T ss_pred --HHHHHhcCccceeeec
Confidence 2345566666655544
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.56 E-value=5.6e-06 Score=87.33 Aligned_cols=370 Identities=13% Similarity=0.132 Sum_probs=218.6
Q ss_pred HHHHhhcC---HHHHHhhhcCCCHHHHHHHHHHHHHhc----CCChHHHHhcCchHHHHhhccCCC-CHHHHHHHHHHHH
Q 004225 353 TTIQKLVS---LPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTRED-NPQLQLEAARALT 424 (767)
Q Consensus 353 ~~~~~~~~---i~~l~~~l~s~~~~~~~~a~~~L~~l~----~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~ 424 (767)
+..+++|. +..++.-++++.+..+.-++....++. ....+.-.+...+..++..++.++ ...+......+..
T Consensus 707 ~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~ 786 (1172)
T KOG0213|consen 707 EIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVV 786 (1172)
T ss_pred HHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHH
Confidence 33455554 344566677777777777777766665 233333344445555555555443 1223333333333
Q ss_pred HHHh-hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchh--HHHHHhcCCHHHHHHHHccCCChHHHHHH
Q 004225 425 NIAS-ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD--RDLVLSEKALIPLLAQLNKHAKPSMLRNA 501 (767)
Q Consensus 425 ~l~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~~~ 501 (767)
+-.. ..+... ..++..++..|.+..+.+|.+|+..++.++..-..+ -+.+-..|. .|.+.+ ....+++.-..
T Consensus 787 ~~lg~r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsI 861 (1172)
T KOG0213|consen 787 NALGGRVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSI 861 (1172)
T ss_pred HHHhhccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHH
Confidence 3222 111111 124556777888999999999999999998321111 122223333 345566 67788888887
Q ss_pred HHHHHhhcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCC
Q 004225 502 TKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFP 580 (767)
Q Consensus 502 ~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~ 580 (767)
+.++..+.... -....--..+++|.|..++++...+++++++..++.++...++.+..--=-.+.--|+++|...+.
T Consensus 862 LgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK-- 939 (1172)
T KOG0213|consen 862 LGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK-- 939 (1172)
T ss_pred HHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH--
Confidence 77777665443 222334567899999999999999999999999999998877633211001255668888888888
Q ss_pred cccchHHHHHhhhhccCC--cceeeh--------------------------------------------hhhHHHHHHH
Q 004225 581 FGLTPPLWTVRYIVKGDG--FLTQCT--------------------------------------------GIAKEACRTI 614 (767)
Q Consensus 581 ~v~~~a~~~L~~l~~~~~--~~~~~l--------------------------------------------~v~~~a~~~l 614 (767)
+++.+|...++.++..-. +....+ .++...+.++
T Consensus 940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence 999999999999985322 111111 2222222222
Q ss_pred hhhccC-CHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc-------C
Q 004225 615 SNITAG-NREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL-------Y 686 (767)
Q Consensus 615 ~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~-------~ 686 (767)
+-+... ..-..+++ .-+.|.|-..|.+.+.--|+.|+.++.+++.+.. ..|..+.++.+++ +
T Consensus 1020 sf~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle 1089 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILE 1089 (1172)
T ss_pred HHHHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcC
Confidence 211110 00000111 1244555566666677788889999999987631 1233444444443 5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 687 ~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
+.|.++.+...++..+........ .+..+.+=+-|+...|++..-.+++.+|-
T Consensus 1090 ~sPhviqa~~e~~eg~r~~Lg~~~--------------------~~~Y~~QGLFHParkVR~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1090 TSPHVIQAFDEAMEGLRVALGPQA--------------------MLKYCLQGLFHPARKVRKRYWTVYNSMYH 1142 (1172)
T ss_pred CChHHHHHHHHHHHHHHHHhchHH--------------------HHHHHHHhccCcHHHHHHHHHHHHHhHhh
Confidence 788888888888877765432211 12334455678888899888877776654
No 78
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.56 E-value=2.4e-07 Score=104.24 Aligned_cols=228 Identities=16% Similarity=0.140 Sum_probs=121.5
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCC
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGD 85 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 85 (767)
.+.+.|++.+. +++.+|. .+ .++|+.|+++++ ++++++ ..+ +++|++|++.++ +++.+|..
T Consensus 178 ~~~~~L~L~~~-~LtsLP~-~I---p~~L~~L~Ls~N-~LtsLP---------~~l--~~nL~~L~Ls~N-~LtsLP~~- 238 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPA-CI---PEQITTLILDNN-ELKSLP---------ENL--QGNIKTLYANSN-QLTSIPAT- 238 (754)
T ss_pred cCceEEEeCCC-CcCcCCc-cc---ccCCcEEEecCC-CCCcCC---------hhh--ccCCCEEECCCC-ccccCChh-
Confidence 45788888886 4666642 22 246888988877 365541 111 458899998876 46666642
Q ss_pred CcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCC
Q 004225 86 LDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGY 165 (767)
Q Consensus 86 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (767)
.+++|+.|++++|.. ... +. ...++|+.|++++|.. ..+|. .+ .++|+.|.++++
T Consensus 239 ----l~~~L~~L~Ls~N~L-~~L-P~----~l~s~L~~L~Ls~N~L-~~LP~------------~l--~~sL~~L~Ls~N 293 (754)
T PRK15370 239 ----LPDTIQEMELSINRI-TEL-PE----RLPSALQSLDLFHNKI-SCLPE------------NL--PEELRYLSVYDN 293 (754)
T ss_pred ----hhccccEEECcCCcc-CcC-Ch----hHhCCCCEEECcCCcc-Ccccc------------cc--CCCCcEEECCCC
Confidence 245888899888753 222 11 1235788888886642 22111 00 125666666665
Q ss_pred CCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchh
Q 004225 166 SASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLI 245 (767)
Q Consensus 166 ~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 245 (767)
. ++.+. ...+++|++|++.++. +..++. ..+++|+.|++.+|. ++.++.. +
T Consensus 294 ~---------------------Lt~LP---~~lp~sL~~L~Ls~N~-Lt~LP~--~l~~sL~~L~Ls~N~-Lt~LP~~-l 344 (754)
T PRK15370 294 S---------------------IRTLP---AHLPSGITHLNVQSNS-LTALPE--TLPPGLKTLEAGENA-LTSLPAS-L 344 (754)
T ss_pred c---------------------cccCc---ccchhhHHHHHhcCCc-cccCCc--cccccceeccccCCc-cccCChh-h
Confidence 3 22210 0012355666665532 222221 123566666666653 3333321 1
Q ss_pred hhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCccccc
Q 004225 246 AKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFS 325 (767)
Q Consensus 246 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 325 (767)
.++|+.|++++|. +..++... .++|+.|+++++ +|+.++.. ..++|+.|+++++ ++..+|
T Consensus 345 ---~~sL~~L~Ls~N~-L~~LP~~l----------p~~L~~LdLs~N-~Lt~LP~~----l~~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 345 ---PPELQVLDVSKNQ-ITVLPETL----------PPTITTLDVSRN-ALTNLPEN----LPAALQIMQASRN-NLVRLP 404 (754)
T ss_pred ---cCcccEEECCCCC-CCcCChhh----------cCCcCEEECCCC-cCCCCCHh----HHHHHHHHhhccC-CcccCc
Confidence 2566677766654 44443211 356667777665 45555432 1135666666665 444444
Q ss_pred c
Q 004225 326 E 326 (767)
Q Consensus 326 ~ 326 (767)
.
T Consensus 405 ~ 405 (754)
T PRK15370 405 E 405 (754)
T ss_pred h
Confidence 3
No 79
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=9.3e-06 Score=86.95 Aligned_cols=238 Identities=21% Similarity=0.186 Sum_probs=166.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
...+.+=|++.+.-++--|+.+++++++ ++.... ..+.+.+++ ++.++.+|+.|+.|...+.+..|. .
T Consensus 109 tNslknDL~s~nq~vVglAL~alg~i~s--~Emard-----lapeVe~Ll-~~~~~~irKKA~Lca~r~irK~P~----l 176 (866)
T KOG1062|consen 109 TNSLKNDLNSSNQYVVGLALCALGNICS--PEMARD-----LAPEVERLL-QHRDPYIRKKAALCAVRFIRKVPD----L 176 (866)
T ss_pred HHHHHhhccCCCeeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHH-hCCCHHHHHHHHHHHHHHHHcCch----H
Confidence 3455555667888888999999999995 333222 457777888 789999999999999999887654 4
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcC---------------CCCCCcccc
Q 004225 520 VRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLH---------------PLPFPFGLT 584 (767)
Q Consensus 520 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---------------~~~~~~v~~ 584 (767)
.+.+++...+++.+.+..|....+..+..+|..+++....+.+ .++.++..|++ +++ -+|.
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dP--FLQi 252 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDP--FLQI 252 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCch--HHHH
Confidence 4556677778888888889999999999999888877776655 77777777753 233 5788
Q ss_pred hHHHHHhhhhccCCcceeeh-------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCC
Q 004225 585 PPLWTVRYIVKGDGFLTQCT-------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAE 645 (767)
Q Consensus 585 ~a~~~L~~l~~~~~~~~~~l-------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 645 (767)
.+++.|+-+.+++.+..+.. .+..+++.+|..|-..+. .+. -++..|-+.+.+.+
T Consensus 253 ~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~-Lrv-----lainiLgkFL~n~d 326 (866)
T KOG1062|consen 253 RILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSG-LRV-----LAINILGKFLLNRD 326 (866)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCch-HHH-----HHHHHHHHHhcCCc
Confidence 89999999988877544332 333444444433333211 111 13455666666666
Q ss_pred chhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 646 FFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 646 ~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
-.+|..|..+|...+.. ++...+.- =..++++++++|+.++.+|++.++.+...
T Consensus 327 ~NirYvaLn~L~r~V~~-d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 327 NNIRYVALNMLLRVVQQ-DPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNE 380 (866)
T ss_pred cceeeeehhhHHhhhcC-CcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 67777777777666654 44443331 23577899999999999999999999853
No 80
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.47 E-value=2.9e-07 Score=103.51 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=89.2
Q ss_pred CCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEE
Q 004225 176 NGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYM 255 (767)
Q Consensus 176 ~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 255 (767)
+|+.|.+++ .++..+. . ..+++|+.|+++++ .+..++. ...++|+.|++++|. ++.++.. -.++|++|
T Consensus 263 ~L~~L~Ls~-N~L~~LP-~--~l~~sL~~L~Ls~N-~Lt~LP~--~lp~sL~~L~Ls~N~-Lt~LP~~----l~~sL~~L 330 (754)
T PRK15370 263 ALQSLDLFH-NKISCLP-E--NLPEELRYLSVYDN-SIRTLPA--HLPSGITHLNVQSNS-LTALPET----LPPGLKTL 330 (754)
T ss_pred CCCEEECcC-CccCccc-c--ccCCCCcEEECCCC-ccccCcc--cchhhHHHHHhcCCc-cccCCcc----ccccceec
Confidence 455555543 2354431 1 12468999999886 3454432 223579999998864 5555432 14789999
Q ss_pred eEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCCCcccc
Q 004225 256 KIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLH 335 (767)
Q Consensus 256 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~ 335 (767)
++.+|. ++.++... .++|+.|+++++ +++.++.. ..++|++|++.+| .+..+|.... ..|+
T Consensus 331 ~Ls~N~-Lt~LP~~l----------~~sL~~L~Ls~N-~L~~LP~~----lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~ 391 (754)
T PRK15370 331 EAGENA-LTSLPASL----------PPELQVLDVSKN-QITVLPET----LPPTITTLDVSRN-ALTNLPENLP--AALQ 391 (754)
T ss_pred cccCCc-cccCChhh----------cCcccEEECCCC-CCCcCChh----hcCCcCEEECCCC-cCCCCCHhHH--HHHH
Confidence 999886 66665432 479999999987 56767642 2479999999998 5777776432 3577
Q ss_pred hhhcccc
Q 004225 336 KVERHGE 342 (767)
Q Consensus 336 ~l~i~~~ 342 (767)
.+++++.
T Consensus 392 ~LdLs~N 398 (754)
T PRK15370 392 IMQASRN 398 (754)
T ss_pred HHhhccC
Confidence 7777763
No 81
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.46 E-value=1.7e-05 Score=79.39 Aligned_cols=240 Identities=12% Similarity=0.134 Sum_probs=168.9
Q ss_pred HHHHhcCCHHHHHHHHccCCCh--HHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhc
Q 004225 474 DLVLSEKALIPLLAQLNKHAKP--SMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLS 550 (767)
Q Consensus 474 ~~~~~~g~i~~L~~ll~~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~ 550 (767)
+++...|+++.|+.++ ..++. .++..|...|.++.... +.+.+.-.+ +..++.+.+ ....+..+..+.++.++.
T Consensus 174 D~iR~~~~lD~Llrmf-~aPn~et~vRve~~rlLEq~~~ae-N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMF-QAPNLETSVRVEAARLLEQILVAE-NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHH-hCCchhHHHHHHHHHHHHHHHhhh-hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 4455678899999999 66654 45888999998887553 333333222 444455544 445788899999999999
Q ss_pred cCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc-CCHHHHHHHH
Q 004225 551 DGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA-GNREQIQVVI 629 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~-~~~~~~~~~~ 629 (767)
.++++..+.++.+|++..++...+..++ .+.+.++.+++|++. +.....+.++
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P--------------------------~lLRH~ALAL~N~~L~~~~a~qrrmv 304 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDP--------------------------ALLRHCALALGNCALHGGQAVQRRMV 304 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCH--------------------------HHHHHHHHHhhhhhhhchhHHHHHHH
Confidence 9999999999999999999999999998 788888888888887 5566677788
Q ss_pred HcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCC---hHHHHhh-----------------------
Q 004225 630 DAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGC---IKPLCDL----------------------- 683 (767)
Q Consensus 630 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~---i~~L~~l----------------------- 683 (767)
+..+-+.|+-+..+.+.-.|..||.+++-++.. .+.-..+...|- +++++..
T Consensus 305 eKr~~EWLF~LA~skDel~R~~AClAV~vlat~--KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~Lq 382 (832)
T KOG3678|consen 305 EKRAAEWLFPLAFSKDELLRLHACLAVAVLATN--KEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQ 382 (832)
T ss_pred HhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh--hhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHH
Confidence 999999999999999989999999999999874 333333333332 2333332
Q ss_pred -----hcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHH
Q 004225 684 -----LLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILE 755 (767)
Q Consensus 684 -----l~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 755 (767)
+++.. .-.+++.|.+-..+..-...+ .-.+.+.+-|+++.|.++..+++.--.+.|.++|.
T Consensus 383 RLvPlLdS~R--~EAq~i~AF~l~~EAaIKs~Q---------~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt 448 (832)
T KOG3678|consen 383 RLVPLLDSNR--LEAQCIGAFYLCAEAAIKSLQ---------GKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT 448 (832)
T ss_pred Hhhhhhhcch--hhhhhhHHHHHHHHHHHHHhc---------cchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 22111 112234444433332221111 12567889999999999999888776677777775
No 82
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00016 Score=76.66 Aligned_cols=220 Identities=14% Similarity=0.163 Sum_probs=167.8
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVL 477 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 477 (767)
++-+.++.++.++. |-+|..|..++.++.-.+.+.+- ..+|.|+.-|+++|+.|+..|..+++.+|..+|..--
T Consensus 144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 45567788899988 99999999999999886666554 4689999999999999999999999999998886421
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCC-HHHHHHHHHHHHh--hccCCh
Q 004225 478 SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSND-NDVLRYACEALSC--LSDGTN 554 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~--l~~~~~ 554 (767)
...|.+.+++-.+.+.-+....+..+++++--.|. .....++.+..++.++. ..+...++.++.. +..+.+
T Consensus 218 --~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 218 --QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred --cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 24578888887778888999999999999866543 45568889999998776 5666677776643 344432
Q ss_pred hHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCH
Q 004225 555 DKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVI 634 (767)
Q Consensus 555 ~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i 634 (767)
+....+. -++..|-.++.+.|+ ..+.-++-+++.+....+...+. --
T Consensus 292 d~~asiq--LCvqKLr~fiedsDq--------------------------NLKYlgLlam~KI~ktHp~~Vqa-----~k 338 (877)
T KOG1059|consen 292 DHSASIQ--LCVQKLRIFIEDSDQ--------------------------NLKYLGLLAMSKILKTHPKAVQA-----HK 338 (877)
T ss_pred CcHHHHH--HHHHHHhhhhhcCCc--------------------------cHHHHHHHHHHHHhhhCHHHHHH-----hH
Confidence 3222221 267788888888888 66666777777777765665553 24
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhhcC
Q 004225 635 GPLVDLLQNAEFFTKKEAARAISNAISG 662 (767)
Q Consensus 635 ~~L~~ll~~~~~~v~~~a~~~L~nl~~~ 662 (767)
+.++++|.+.++.+|..|...|..|+..
T Consensus 339 dlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 339 DLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 5788899999999999999999988864
No 83
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=0.00012 Score=76.92 Aligned_cols=306 Identities=19% Similarity=0.138 Sum_probs=203.2
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHH-HHHHHHHHHhhhhHHHHhCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLE-AARALTNIASENTNVVIDGG 438 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~ 438 (767)
.+.+.+.+.+.....+..|+..+..+. ........+.+++..+.+.+++.. ...+++ +..+...... +-....+..
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~-~Lg~~~EPy 213 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKK-SALNREAALLAFEAAQG-NLGPPFEPY 213 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHH-hcCCCCCch
Confidence 566677788888888999999988888 555777778889999999998877 444443 3333322222 111333445
Q ss_pred ChHHHHHhhC---CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC
Q 004225 439 AVPIFVKLLS---SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP 515 (767)
Q Consensus 439 ~l~~L~~lL~---~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 515 (767)
+++.+-.++. +..+.+|..|..+...+....+.+.-. -.++.++.-+ .........+++..++.++...+..
T Consensus 214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l-~~~kWrtK~aslellg~m~~~ap~q 288 (569)
T KOG1242|consen 214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSL-LEAKWRTKMASLELLGAMADCAPKQ 288 (569)
T ss_pred HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHH-HHHhhhhHHHHHHHHHHHHHhchHH
Confidence 5555555554 466888888887777666433322111 1345555555 3337788999999999998887777
Q ss_pred CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChh-HHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 516 PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTND-KIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 516 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
-......++|.+...+.++.++++.++..++.+++..-++ .++ .++|.+++.+.++.. . ...++..|+.-+
T Consensus 289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~--~-~~e~~~~L~~tt 360 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSC--Y-TPECLDSLGATT 360 (569)
T ss_pred HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCccc--c-hHHHHHhhccee
Confidence 7778889999999999999999999999999999865332 233 378999999998873 1 111222111111
Q ss_pred ccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCC-CHHHHHHHHH
Q 004225 595 KGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGG-THEQIKYLVR 673 (767)
Q Consensus 595 ~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~l~~ 673 (767)
. .. .-.+.... -++|.|.+-+...+...++.++.++.|++.-. ++......+.
T Consensus 361 F-------------------V~--~V~~psLa-----lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 361 F-------------------VA--EVDAPSLA-----LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred e-------------------ee--eecchhHH-----HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 0 00 00011111 14566667777778899999999999998753 3444433222
Q ss_pred cCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhh
Q 004225 674 KGCIKPLCDLLLYADPEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 674 ~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 708 (767)
. .++-+-..+.+..|++|..+..||..+.+..+.
T Consensus 415 ~-Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 415 S-LLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred H-HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 2 556666666778999999999999988876443
No 84
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.44 E-value=7.6e-08 Score=100.00 Aligned_cols=253 Identities=16% Similarity=0.073 Sum_probs=128.5
Q ss_pred ccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccccc------ccccCCCCcccCCCCccEEEecc
Q 004225 28 VSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKF------TSFCTGDLDILEFPSLKELRISK 101 (767)
Q Consensus 28 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l------~~~~~~~~~~~~~~~L~~L~l~~ 101 (767)
+..+.+|++|++++|. +.. .+.......+...++|++|++.++.-- ..++. . ...+++|++|++++
T Consensus 19 ~~~l~~L~~l~l~~~~-l~~----~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~--l~~~~~L~~L~l~~ 90 (319)
T cd00116 19 LPKLLCLQVLRLEGNT-LGE----EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-G--LTKGCGLQELDLSD 90 (319)
T ss_pred HHHHhhccEEeecCCC-CcH----HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-H--HHhcCceeEEEccC
Confidence 4566778888888775 321 111223344555677888888765321 11111 1 23467888888888
Q ss_pred CCccccccccccc-ccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhc-cccceeeecCCCCCCCcccccCCce
Q 004225 102 CPEFMVRTTSIFT-ERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRL-HTMKVLQIGGYSASLPYEKVENGMW 179 (767)
Q Consensus 102 c~~l~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~l~~ 179 (767)
|+........+.. ... ++|++|++++|..... ....+...+..+ ++|+.|.++++......
T Consensus 91 ~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~--------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-------- 153 (319)
T cd00116 91 NALGPDGCGVLESLLRS-SSLQELKLNNNGLGDR--------GLRLLAKGLKDLPPALEKLVLGRNRLEGAS-------- 153 (319)
T ss_pred CCCChhHHHHHHHHhcc-CcccEEEeeCCccchH--------HHHHHHHHHHhCCCCceEEEcCCCcCCchH--------
Confidence 7754321111100 012 4588888887763211 111222334455 67777777776532110
Q ss_pred eeeeecccccchhhccccccccccEEEecCCCcccc----ccCCCCcCCCCCEEEeccCccchhhcC---chhhhccccC
Q 004225 180 VEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVN----LVPPSTSFQNLTNMVVSRCNNLKIVLT---SLIAKTLVRL 252 (767)
Q Consensus 180 l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~----~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L 252 (767)
...+ ......+++|++|+++++..... +......+++|+.|++++|.. ++... ...+..+++|
T Consensus 154 --------~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 154 --------CEAL-AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-TDEGASALAETLASLKSL 223 (319)
T ss_pred --------HHHH-HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc-ChHHHHHHHHHhcccCCC
Confidence 0011 11122346788888877643211 111123456888888888743 22211 1123456788
Q ss_pred cEEeEccccccchhccccccccccccccccccceEeecCCCCccccc---CCCccccCCccceEeecCCC
Q 004225 253 RYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFC---SGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 253 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~~~L~~L~i~~c~ 319 (767)
++|++++|+ +........... .....+.|++|++++|. +++.. .......+++|+++++.++.
T Consensus 224 ~~L~ls~n~-l~~~~~~~l~~~--~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 224 EVLNLGDNN-LTDAGAAALASA--LLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CEEecCCCc-CchHHHHHHHHH--HhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 888888875 332111000000 00013788899998873 32111 11122345889999998874
No 85
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.43 E-value=9.1e-05 Score=76.30 Aligned_cols=358 Identities=16% Similarity=0.104 Sum_probs=216.0
Q ss_pred HHHhhhcC--CCHHHHHHHHHHHHHhc---CCCh-HHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHH
Q 004225 363 GMLAGVWS--DDSGLQLEATTWFRKLL---LPPS-EKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNV 433 (767)
Q Consensus 363 ~l~~~l~s--~~~~~~~~a~~~L~~l~---~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~ 433 (767)
.++..-.+ .+..+++.|+++|..-+ ..+. ..--+.=+++...+..+.++ .+++..|..+|.++.. +..+.
T Consensus 180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ 258 (858)
T COG5215 180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQS 258 (858)
T ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333 44568888999988733 1111 11111123566677778888 8999999999999998 55556
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHH----------------HHhcCCHHHHHHHHcc-C----
Q 004225 434 VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDL----------------VLSEKALIPLLAQLNK-H---- 492 (767)
Q Consensus 434 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~----------------~~~~g~i~~L~~ll~~-~---- 492 (767)
..+........+.+++++.++..+|......++....+..-. -.-.+++|.++++|.+ .
T Consensus 259 ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~ 338 (858)
T COG5215 259 YMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYY 338 (858)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 666666667788899999999999999888877422211000 0012378889999852 1
Q ss_pred -CChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHH
Q 004225 493 -AKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVK 571 (767)
Q Consensus 493 -~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 571 (767)
++..+-..|..+|.-+++.. .......++..+-+-+++++..-++.++.+++.+..+..+....-+-...+|.+..
T Consensus 339 ~DdWn~smaA~sCLqlfaq~~---gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n 415 (858)
T COG5215 339 GDDWNPSMAASSCLQLFAQLK---GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN 415 (858)
T ss_pred ccccchhhhHHHHHHHHHHHh---hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH
Confidence 23345555555555554332 12234446666667778899999999999999999887654443333468888888
Q ss_pred HhcCCCCCCcccchHHHHHhhhhccCCcc---eeeh---------------hhhHHHHHHHhhhccCCHHHHHHH--HHc
Q 004225 572 LLLHPLPFPFGLTPPLWTVRYIVKGDGFL---TQCT---------------GIAKEACRTISNITAGNREQIQVV--IDA 631 (767)
Q Consensus 572 lL~~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~l---------------~v~~~a~~~l~nl~~~~~~~~~~~--~~~ 631 (767)
.+.++.. -+...+.|+++.+++.-... ...+ .+..+.+|..-|++.+-++..... .-.
T Consensus 416 ~m~D~~l--~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~ 493 (858)
T COG5215 416 EMSDSCL--WVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLA 493 (858)
T ss_pred hccccee--ehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhH
Confidence 8887766 88999999999998543211 1111 556677898888887544333110 001
Q ss_pred CCHHHHHHHH----h--cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-----------HHhhhcCCC----HH
Q 004225 632 GVIGPLVDLL----Q--NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKP-----------LCDLLLYAD----PE 690 (767)
Q Consensus 632 ~~i~~L~~ll----~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~-----------L~~ll~~~~----~~ 690 (767)
+..+.++.-| + ..+...|..+..+|+.++..+.......+ .|+... +-..+.-.| .+
T Consensus 494 ~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~--a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~e 571 (858)
T COG5215 494 KFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL--AGFYDYTSKKLDECISVLGQILATEDQLLVEE 571 (858)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH--HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 1223333322 2 33567888888999988876433322221 122222 222222222 35
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCC
Q 004225 691 IVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHD 742 (767)
Q Consensus 691 v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~ 742 (767)
++...+..|..++..... ..+.....+ ++.+.+++++.
T Consensus 572 lqSN~~~vl~aiir~~~~---------~ie~v~D~l-----m~Lf~r~les~ 609 (858)
T COG5215 572 LQSNYIGVLEAIIRTRRR---------DIEDVEDQL-----MELFIRILEST 609 (858)
T ss_pred HHHHHHHHHHHHHHhcCC---------CcccHHHHH-----HHHHHHHHhcc
Confidence 666667777777654322 233444444 55566666665
No 86
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=7.6e-05 Score=79.86 Aligned_cols=314 Identities=17% Similarity=0.193 Sum_probs=187.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
+|.+++..-+.+.+++...--+|.+.+ ..+--++.. |..+-+-|++++ +.+|..|.++|..+-- .++..-+
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLS---IntfQk~L~DpN-~LiRasALRvlSsIRv----p~IaPI~ 144 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLS---INTFQKALKDPN-QLIRASALRVLSSIRV----PMIAPIM 144 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeee---HHHHHhhhcCCc-HHHHHHHHHHHHhcch----hhHHHHH
Confidence 788888888899999888888888888 222222222 455556677777 6777655555554421 1111111
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh--------------------------------cCCHHHHHH
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLS--------------------------------EKALIPLLA 487 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--------------------------------~g~i~~L~~ 487 (767)
+-++-++..+..+-||..|+.++-.+-+-+++....+.+ .+....+++
T Consensus 145 llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ 224 (968)
T KOG1060|consen 145 LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCR 224 (968)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHh
Confidence 223333445566777777777777776665655443321 012233333
Q ss_pred HHccCCChHHHHHHHHHHHhhcCCC-CCC------------------------Cccchh----chHHHHHHHhcCCCHHH
Q 004225 488 QLNKHAKPSMLRNATKTLSRFCQGK-PEP------------------------PFDQVR----PALPALAQLVHSNDNDV 538 (767)
Q Consensus 488 ll~~~~~~~~~~~~~~~L~~l~~~~-~~~------------------------~~~~~~----~~i~~L~~ll~~~~~~v 538 (767)
++ .+-+.--+..++..|...|+.. +.+ ...... -.+...-.++++.++.+
T Consensus 225 ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sV 303 (968)
T KOG1060|consen 225 LL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSV 303 (968)
T ss_pred hc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHH
Confidence 33 2222333333444444444332 111 000111 12333445667888999
Q ss_pred HHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcc-----eeeh-------hh
Q 004225 539 LRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFL-----TQCT-------GI 606 (767)
Q Consensus 539 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~l-------~v 606 (767)
..+++.+.+.++...+ . ..++..|+.+|..+. +++.-.+..+..++...+.. ..+. .+
T Consensus 304 VmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs~~---~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~v 373 (968)
T KOG1060|consen 304 VMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRSNR---EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQV 373 (968)
T ss_pred HHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhcCC---cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHH
Confidence 9999999999885431 1 136788999998876 67888888888887544321 1111 44
Q ss_pred hHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC
Q 004225 607 AKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686 (767)
Q Consensus 607 ~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~ 686 (767)
..--+.+|++++....- . .+++.+-.++++.+..+...|+.+++.++... .. +...++.-|+.++++
T Consensus 374 k~lKleiLs~La~esni--~-----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~-~s-----v~~tCL~gLv~Llss 440 (968)
T KOG1060|consen 374 KILKLEILSNLANESNI--S-----EILRELQTYIKSSDRSFAAAAVKAIGRCASRI-GS-----VTDTCLNGLVQLLSS 440 (968)
T ss_pred HHHHHHHHHHHhhhccH--H-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhh-Cc-----hhhHHHHHHHHHHhc
Confidence 45556677777664221 1 14556667777777788888889999887642 11 222367788889999
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 004225 687 ADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 687 ~~~~v~~~al~aL~~l~~~~ 706 (767)
.+..|..++...|..++...
T Consensus 441 hde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 441 HDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred ccchhHHHHHHHHHHHHhhC
Confidence 99999999999999998753
No 87
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00012 Score=78.80 Aligned_cols=309 Identities=16% Similarity=0.139 Sum_probs=193.2
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHH
Q 004225 364 MLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIF 443 (767)
Q Consensus 364 l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L 443 (767)
+.+-|++.+.-++-.|+.++++++++..-. ++.|..-+++++.+ +.++..|+-|...+.....+.+ ...++..
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~Emar----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~--e~f~~~~ 184 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSPEMAR----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLV--EHFVIAF 184 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCHHHhH----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHH--HHhhHHH
Confidence 344567888888999999999988544211 34577778888888 9999999999888876111111 2346777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHcc--------------CCChHHHHHHHHHHHhhc
Q 004225 444 VKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK--------------HAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 444 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--------------~~~~~~~~~~~~~L~~l~ 509 (767)
..+|.+.+.-|...++..+..++..+++....+-+ .++.++..|++ -++|-++..++..|.-+-
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 78888888888888888888888776665544433 66666666631 147788888888888777
Q ss_pred CCCCCCCccchhchHHHHHHHhcCCC------HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCccc
Q 004225 510 QGKPEPPFDQVRPALPALAQLVHSND------NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGL 583 (767)
Q Consensus 510 ~~~~~~~~~~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~ 583 (767)
++++.. ...+..++ -++..+.| ..+...++.++..+-..+.-.. -++..|-++|.+.|. .++
T Consensus 263 q~d~da-Sd~M~DiL---aqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrv------lainiLgkFL~n~d~--Nir 330 (866)
T KOG1062|consen 263 QNDADA-SDLMNDIL---AQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRV------LAINILGKFLLNRDN--NIR 330 (866)
T ss_pred CCCccH-HHHHHHHH---HHHHhcccccccchhHHHHHHHHHHHhccCCchHHH------HHHHHHHHHhcCCcc--cee
Confidence 775321 11222222 22222211 4566666666665544432111 145566677777776 777
Q ss_pred chHHHHHhhhhccCCcceeeh-------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHH
Q 004225 584 TPPLWTVRYIVKGDGFLTQCT-------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKK 650 (767)
Q Consensus 584 ~~a~~~L~~l~~~~~~~~~~l-------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 650 (767)
+-|+..|......++...+.= .+++.|+...-.++..+ .+. .++..|+..|...+++.|.
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~-----~mv~eLl~fL~~~d~~~k~ 403 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVR-----VMVKELLEFLESSDEDFKA 403 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHH-----HHHHHHHHHHHhccHHHHH
Confidence 777777777765555332210 55555555544444321 111 1456788888888888999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 651 EAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 651 ~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
..+.-+..++....|+.... ++.+...+......|+..+...+..++..+
T Consensus 404 ~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 404 DIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 88888888887766655443 555666666655555555666666665543
No 88
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=0.00012 Score=77.07 Aligned_cols=308 Identities=14% Similarity=0.098 Sum_probs=198.5
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVL 477 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 477 (767)
++..+++-+..+. +.+|+....++..+.. ..... .....+-+.+++...+..-+..+++.++.+..+.. ...+.
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~~ 171 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS--GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESLK 171 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC--HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhhh
Confidence 4678888888888 8999999988888776 11111 11245678888888888889999999999987654 34466
Q ss_pred hcCCHHHHHHHHccCCChHHHH-HHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhH
Q 004225 478 SEKALIPLLAQLNKHAKPSMLR-NATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDK 556 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~~~~~-~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 556 (767)
+.+.+..+...+ .+.....++ .+..+....+..-.....-..-..+|.++.-+.+....+|.++..+...+.+.-+..
T Consensus 172 ~~~~l~~l~~ai-~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~ 250 (569)
T KOG1242|consen 172 EFGFLDNLSKAI-IDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY 250 (569)
T ss_pred hhhHHHHHHHHh-cccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc
Confidence 778889998888 454444443 344444333333222222333445566666566777899999888887776554322
Q ss_pred -HHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHH
Q 004225 557 -IQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIG 635 (767)
Q Consensus 557 -~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~ 635 (767)
.. .++|.++.-+....+ ..+..++..++.++...+.+... .-..++|
T Consensus 251 aVK-----~llpsll~~l~~~kW--------------------------rtK~aslellg~m~~~ap~qLs~-~lp~iiP 298 (569)
T KOG1242|consen 251 AVK-----LLLPSLLGSLLEAKW--------------------------RTKMASLELLGAMADCAPKQLSL-CLPDLIP 298 (569)
T ss_pred hhh-----HhhhhhHHHHHHHhh--------------------------hhHHHHHHHHHHHHHhchHHHHH-HHhHhhH
Confidence 22 244555544444466 44556666666666655555543 3346899
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHH----H--------------------------cCC----hHHHH
Q 004225 636 PLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLV----R--------------------------KGC----IKPLC 681 (767)
Q Consensus 636 ~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~----~--------------------------~~~----i~~L~ 681 (767)
.+.+.|-+..+++|+.+..++..+....+...++.++ + .-. ++.|.
T Consensus 299 ~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~ 378 (569)
T KOG1242|consen 299 VLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILK 378 (569)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHH
Confidence 9999999999999999999999987543222232211 1 011 22222
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHH
Q 004225 682 DLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEI 756 (767)
Q Consensus 682 ~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 756 (767)
+-+...+..+...++.++.|++.-.++.+ ...+|...| ++.+.....+..|++|..|..++..
T Consensus 379 R~l~eRst~~kr~t~~IidNm~~LveDp~-------~lapfl~~L-----lp~lk~~~~d~~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 379 RGLAERSTSIKRKTAIIIDNMCKLVEDPK-------DLAPFLPSL-----LPGLKENLDDAVPEVRAVAARALGA 441 (569)
T ss_pred HHHhhccchhhhhHHHHHHHHHHhhcCHH-------HHhhhHHHH-----hhHHHHHhcCCChhHHHHHHHHHHH
Confidence 23334566777888888888887654332 223344444 7788888888899999999998853
No 89
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.38 E-value=6.2e-05 Score=78.14 Aligned_cols=331 Identities=16% Similarity=0.180 Sum_probs=212.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNV 433 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~ 433 (767)
+...+..|++..|.++..|+.....++ +.....+...|. .|.+.+..+. |++--....++..+.+ ..+..
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhccccc
Confidence 667788999999999999999999887 455555556553 4777787777 8877666666666665 11110
Q ss_pred H-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc-CCHHHHHHHHccCCChHHHHHHHHHHHhhcCC
Q 004225 434 V-IDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSE-KALIPLLAQLNKHAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 434 ~-~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 511 (767)
- =-.|++|.|..+|++....++...+..++.++...+++... .+. .+--.|+..| .+-+.+++++|..+++.+++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~-rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV-REWMRICFELVDSL-KSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH-HHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhh
Confidence 0 02489999999999999999999999999999888774210 000 1234566777 778899999999999999865
Q ss_pred CCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHh
Q 004225 512 KPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVR 591 (767)
Q Consensus 512 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~ 591 (767)
- --+.++..|++-++..+...+....-+++-+++.... -.++|.++.--..++. .+|.-.+++++
T Consensus 761 i------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~--nVQnGvLkam~ 825 (975)
T COG5181 761 I------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEA--NVQNGVLKAMC 825 (975)
T ss_pred c------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchh--HHHHhHHHHHH
Confidence 3 3345666676666666555555444455544433211 1366777766666666 66666666665
Q ss_pred hhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHH-HHHH
Q 004225 592 YIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHE-QIKY 670 (767)
Q Consensus 592 ~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~-~~~~ 670 (767)
++... +++ ...+++. -+.|.+-..|.+.++--|+.|...+.+++.++.-. ....
T Consensus 826 fmFey-----------------ig~------~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda 880 (975)
T COG5181 826 FMFEY-----------------IGQ------ASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDA 880 (975)
T ss_pred HHHHH-----------------HHH------HHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHH
Confidence 55421 111 1112221 25677777888888889999999999998753211 1111
Q ss_pred HHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHH
Q 004225 671 LVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKA 750 (767)
Q Consensus 671 l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a 750 (767)
+++ .+..|.--+-++.|.++......+..+....... . .+..+++=+-|++..|+++.
T Consensus 881 ~IH--LlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g-----------~---------~m~Yv~qGLFHPs~~VRk~y 938 (975)
T COG5181 881 AIH--LLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG-----------A---------MMKYVQQGLFHPSSTVRKRY 938 (975)
T ss_pred HHH--HHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH-----------H---------HHHHHHHhccCchHHHHHHH
Confidence 111 1112222223577888887777777666533211 1 13445666789999999887
Q ss_pred HHHHHHhc
Q 004225 751 VKILEIYW 758 (767)
Q Consensus 751 ~~~l~~~~ 758 (767)
-.+.+..|
T Consensus 939 wtvyn~my 946 (975)
T COG5181 939 WTVYNIMY 946 (975)
T ss_pred HHHHhhhh
Confidence 77777654
No 90
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.36 E-value=9.4e-05 Score=80.69 Aligned_cols=299 Identities=15% Similarity=0.154 Sum_probs=170.7
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHH
Q 004225 447 LSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPA 526 (767)
Q Consensus 447 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~ 526 (767)
+.++...+|..|+.+|+.++...+. .. -.++++.+++-|.........+.-+.+++.+++....+........+|.
T Consensus 183 l~s~R~aVrKkai~~l~~la~~~~~--~l--y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~ 258 (1233)
T KOG1824|consen 183 LQSPRLAVRKKAITALGHLASSCNR--DL--YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPL 258 (1233)
T ss_pred ccChHHHHHHHHHHHHHHHHHhcCH--HH--HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHH
Confidence 3344567888888888888865432 11 2236677777775566677778888888888877766666677788999
Q ss_pred HHHHh---cCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCC--------------------CC-----
Q 004225 527 LAQLV---HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHP--------------------LP----- 578 (767)
Q Consensus 527 L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--------------------~~----- 578 (767)
+.+.. +.++.+.++.++.++..+....+..+..... .++..+++.+... |.
T Consensus 259 v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~de 337 (1233)
T KOG1824|consen 259 VADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDE 337 (1233)
T ss_pred HHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccc
Confidence 99888 6788999999999998887666544433221 2444444444321 00
Q ss_pred -------CCcccchHHHHHhhhhccCCcceeeh-----------------hhhHHHHHH----Hhh---hcc--------
Q 004225 579 -------FPFGLTPPLWTVRYIVKGDGFLTQCT-----------------GIAKEACRT----ISN---ITA-------- 619 (767)
Q Consensus 579 -------~~~v~~~a~~~L~~l~~~~~~~~~~l-----------------~v~~~a~~~----l~n---l~~-------- 619 (767)
.=.|+.+|++++..+.....+....+ .++.....+ +.+ ...
T Consensus 338 YsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~ 417 (1233)
T KOG1824|consen 338 YSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAM 417 (1233)
T ss_pred cccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhh
Confidence 00267788888877764433222111 111111000 000 000
Q ss_pred ---CCH-----------HHHH----------------------HHHH----------cCCHHHHHHHHhcC--CchhHHH
Q 004225 620 ---GNR-----------EQIQ----------------------VVID----------AGVIGPLVDLLQNA--EFFTKKE 651 (767)
Q Consensus 620 ---~~~-----------~~~~----------------------~~~~----------~~~i~~L~~ll~~~--~~~v~~~ 651 (767)
+.+ ...+ .++. -..+|.++..+.+. ....+..
T Consensus 418 e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~ 497 (1233)
T KOG1824|consen 418 EQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKID 497 (1233)
T ss_pred hccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHH
Confidence 000 0000 0000 01233333333322 3467888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhch
Q 004225 652 AARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEG 731 (767)
Q Consensus 652 a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 731 (767)
+...+.+....+.++....++.. ..+++.....++=+++-..|+-+...+++......... +-+.+++...+..
T Consensus 498 ~L~fl~~~L~s~~p~~fhp~~~~-Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~--~~d~~~~v~~m~~--- 571 (1233)
T KOG1824|consen 498 ALVFLYSALISHPPEVFHPHLSA-LSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPS--SFDASPYVKTMYD--- 571 (1233)
T ss_pred HHHHHHHHHhcCChhhcccchhh-hhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCc--cCCCChhHHHHHH---
Confidence 88888887776677765554332 45555555556667888888888888887654433211 1134455555521
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHh
Q 004225 732 FKKIEDLK-RHDSNGICEKAVKILEIY 757 (767)
Q Consensus 732 ~~~l~~l~-~~~~~~v~~~a~~~l~~~ 757 (767)
-.++.+. .+.+.+|+++|+.++..+
T Consensus 572 -~tl~rL~a~d~DqeVkeraIscmgq~ 597 (1233)
T KOG1824|consen 572 -CTLQRLKATDSDQEVKERAISCMGQI 597 (1233)
T ss_pred -HHHHHHhcccccHHHHHHHHHHHHHH
Confidence 2233333 446788999999988765
No 91
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.34 E-value=0.00012 Score=76.42 Aligned_cols=240 Identities=17% Similarity=0.070 Sum_probs=137.3
Q ss_pred HHHHHhhhc-CCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 361 LPGMLAGVW-SDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 361 i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
++.++..+. .+++++...++..+.....+. ++..|++.+.+.+ +.++..++.+|+.+- ....
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~--------~~~a 118 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQEDAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLG--------GRQA 118 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccCChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCC--------chHH
Confidence 455555663 445555555444443211110 2566666666666 667777777666543 2344
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
.+.|+.+|++.++.++..++.+++..- ....+.+...+ +++++.++..++.+++.+-...
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~~------- 178 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRRL------- 178 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhcccc-------
Confidence 566677777777777766665555421 11335666666 5777777777777777665442
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCc
Q 004225 520 VRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGF 599 (767)
Q Consensus 520 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~ 599 (767)
.++.|...+.+.++.|+..+++++..+.. +. ....+..+......
T Consensus 179 ---a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~--------------------- 223 (410)
T TIGR02270 179 ---SESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGG--------------------- 223 (410)
T ss_pred ---chHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCc---------------------
Confidence 45556666677777777777777755532 11 12223332222222
Q ss_pred ceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH
Q 004225 600 LTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKP 679 (767)
Q Consensus 600 ~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~ 679 (767)
.....+..++... +.+ .+++.|..+++... ++..++++++.+-.. . .++.
T Consensus 224 -----~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p---~---------av~~ 273 (410)
T TIGR02270 224 -----PHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV---E---------AAPW 273 (410)
T ss_pred -----cHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc---c---------hHHH
Confidence 1111111122111 111 36777888887755 899999999976653 2 5666
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 680 LCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 680 L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
|+..+. ++.++..|.+++..|.-
T Consensus 274 L~~~l~--d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 274 CLEAMR--EPPWARLAGEAFSLITG 296 (410)
T ss_pred HHHHhc--CcHHHHHHHHHHHHhhC
Confidence 777776 33488889999998875
No 92
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=8.7e-08 Score=95.39 Aligned_cols=114 Identities=17% Similarity=0.236 Sum_probs=53.4
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|+...|.+|. ....+..+..+.|++++.|+++.+- +.+| +...+....||+|+.|+++.. ++..+..
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw------~~v~~i~eqLp~Le~LNls~N-rl~~~~~ 189 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNW------FPVLKIAEQLPSLENLNLSSN-RLSNFIS 189 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhH------HHHHHHHHhcccchhcccccc-cccCCcc
Confidence 35566666666653 3333322344566667777666542 2222 111223344666666666653 2222222
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCc
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAK 129 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 129 (767)
... ...+++|+.|.+++|..-..... +-...+|+|+.|.+..+
T Consensus 190 s~~-~~~l~~lK~L~l~~CGls~k~V~--~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 190 SNT-TLLLSHLKQLVLNSCGLSWKDVQ--WILLTFPSLEVLYLEAN 232 (505)
T ss_pred ccc-hhhhhhhheEEeccCCCCHHHHH--HHHHhCCcHHHhhhhcc
Confidence 111 23456666666666653322110 11124556666655544
No 93
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.30 E-value=2e-07 Score=101.34 Aligned_cols=134 Identities=17% Similarity=0.249 Sum_probs=89.0
Q ss_pred cccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEV 278 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 278 (767)
.+.|+.|++.+-..-...++.+.++.+||.|++++. ++... +.....+++.||+|++++.. ++.++...-.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGNk-L~~Lp~tva~------ 428 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSGNK-LTTLPDTVAN------ 428 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhcccch-hhhhhHHHHh------
Confidence 466777777764443445666778999999999875 34444 44556788899999998854 7777754433
Q ss_pred ccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccc-cCCCCcccchhhccccchhhhc
Q 004225 279 ITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSE-GKLSTPKLHKVERHGEACWAWK 348 (767)
Q Consensus 279 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~l~i~~~~~~~~~ 348 (767)
++.|+.|...+ ..|.++|. ...+|.|+.+++ +|.+|+.... ...+.++|++++++|......|
T Consensus 429 --~~~L~tL~ahs-N~l~~fPe---~~~l~qL~~lDl-S~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d 492 (1081)
T KOG0618|consen 429 --LGRLHTLRAHS-NQLLSFPE---LAQLPQLKVLDL-SCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD 492 (1081)
T ss_pred --hhhhHHHhhcC-Cceeechh---hhhcCcceEEec-ccchhhhhhhhhhCCCcccceeeccCCcccccc
Confidence 67777776653 35666662 246788888888 4777774322 2333378888888886654444
No 94
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7e-09 Score=97.60 Aligned_cols=185 Identities=19% Similarity=0.297 Sum_probs=89.3
Q ss_pred CCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccccccc-ccCCCCcccCCCCccEEEeccCCcccccccc
Q 004225 33 QLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTS-FCTGDLDILEFPSLKELRISKCPEFMVRTTS 111 (767)
Q Consensus 33 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 111 (767)
.|++||+++.. ++. ..+...+..+.+|+.|.+.+.. |.+ +.. . +..=.+|+.|+++.|..++....+
T Consensus 186 Rlq~lDLS~s~-it~-------stl~~iLs~C~kLk~lSlEg~~-LdD~I~~-~--iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITV-------STLHGILSQCSKLKNLSLEGLR-LDDPIVN-T--IAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhHHhhcchhh-eeH-------HHHHHHHHHHHhhhhccccccc-cCcHHHH-H--HhccccceeeccccccccchhHHH
Confidence 57788876543 210 1222334446677777766643 221 111 0 223367888888888877765433
Q ss_pred cccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhh-ccccceeeecCCCCCCCcccccCCceeeeeecccccc
Q 004225 112 IFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQR-LHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEH 190 (767)
Q Consensus 112 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~ 190 (767)
..- ..++.|.+|.+++|...++. +.-...+ -++|+.|.++||...+-.. +++.
T Consensus 254 ll~-~scs~L~~LNlsWc~l~~~~-----------Vtv~V~hise~l~~LNlsG~rrnl~~s--------------h~~t 307 (419)
T KOG2120|consen 254 LLL-SSCSRLDELNLSWCFLFTEK-----------VTVAVAHISETLTQLNLSGYRRNLQKS--------------HLST 307 (419)
T ss_pred HHH-HhhhhHhhcCchHhhccchh-----------hhHHHhhhchhhhhhhhhhhHhhhhhh--------------HHHH
Confidence 221 35677888888877654331 0001111 1245555555554322110 1111
Q ss_pred hhhccccccccccEEEecCCCcccc-ccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccc
Q 004225 191 ILIRESSVTNNLVILRVKGCDHLVN-LVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSC 260 (767)
Q Consensus 191 ~~~~~~~~~~~L~~L~i~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 260 (767)
+ ...+++|.+|++++|..++. .+.....|+.|++|.++.|+.+..-... .+...|+|.+|++.+|
T Consensus 308 L----~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 308 L----VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGC 373 (419)
T ss_pred H----HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHee-eeccCcceEEEEeccc
Confidence 1 11245666666666555432 1112345566666666666654332111 1234555666665554
No 95
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.26 E-value=0.00026 Score=75.21 Aligned_cols=218 Identities=14% Similarity=0.104 Sum_probs=148.2
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc-chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh--hHH
Q 004225 481 ALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD-QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTN--DKI 557 (767)
Q Consensus 481 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~ 557 (767)
++..++..| .++++.++..|+..++.++.--..+... .....--.|...+...++++.-..+.++..+...-. ...
T Consensus 800 i~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 800 ICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 355666667 8899999999999999887543333222 222222346677788889888877777766653321 011
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeeh------------------hhhHHHHHHHhhhcc
Q 004225 558 QAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT------------------GIAKEACRTISNITA 619 (767)
Q Consensus 558 ~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l------------------~v~~~a~~~l~nl~~ 619 (767)
.-+ .+++|.|...|++... .++.+++..++.++...++....= ++++.|...++-|+.
T Consensus 879 pPi--~dllPrltPILknrhe--KVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 879 PPI--KDLLPRLTPILKNRHE--KVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCh--hhhcccchHhhhhhHH--HHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 111 3689999999999998 999999999999997776533211 888999999888876
Q ss_pred --CCHHHHHHHHH-----------------------c---CCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHH
Q 004225 620 --GNREQIQVVID-----------------------A---GVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYL 671 (767)
Q Consensus 620 --~~~~~~~~~~~-----------------------~---~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l 671 (767)
+..+....+++ . .++|.|++=...++..||.-...+++.+..........++
T Consensus 955 aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi 1034 (1172)
T KOG0213|consen 955 AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI 1034 (1172)
T ss_pred hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH
Confidence 44443333332 1 2355555555567778898888888888754222222332
Q ss_pred HHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 672 VRKGCIKPLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 672 ~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
.. +.+.|.+.+.+.|+--|+-|..++..+.-+
T Consensus 1035 ya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1035 YA--VTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HH--hhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 22 677788888888888888899999998864
No 96
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.24 E-value=1.3e-07 Score=104.79 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=24.8
Q ss_pred cccceEeecCCCCcccccCCCccccCCccceEeecCCCCcc
Q 004225 282 RELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMK 322 (767)
Q Consensus 282 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~ 322 (767)
.+++.|.+..|...+.-........+..++.+.+.+|+.+.
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 34777777777666555443211225667777777777665
No 97
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.23 E-value=3.9e-07 Score=94.61 Aligned_cols=272 Identities=17% Similarity=0.092 Sum_probs=144.9
Q ss_pred CCCccEEeeecCCCccccc---cCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccc
Q 004225 5 IQNLTRLTLSCCMNLRCLF---SSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSF 81 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 81 (767)
+++|+.|.+.+|. +.... ........++|++|+++++. +... ..+....+..+..+++|++|++++|+--...
T Consensus 22 l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 22 LLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRI--PRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCc--chHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 5679999999986 32110 01123567779999988764 2210 0011222234445789999999998753222
Q ss_pred cCCCCcccCC---CCccEEEeccCCcccccccccc-ccccc-CCCceeeeCCcccccccccCCCcchhcchhhHhhhccc
Q 004225 82 CTGDLDILEF---PSLKELRISKCPEFMVRTTSIF-TERVF-PNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHT 156 (767)
Q Consensus 82 ~~~~~~~~~~---~~L~~L~l~~c~~l~~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (767)
+.. ...+ ++|++|++++|........... ....+ ++|++|++.+|..... ....+...+..+++
T Consensus 98 ~~~---~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--------~~~~~~~~~~~~~~ 166 (319)
T cd00116 98 CGV---LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA--------SCEALAKALRANRD 166 (319)
T ss_pred HHH---HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch--------HHHHHHHHHHhCCC
Confidence 211 1122 5599999999874321111000 01245 8999999999874321 11233445666778
Q ss_pred cceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCcc----ccccCCCCcCCCCCEEEec
Q 004225 157 MKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHL----VNLVPPSTSFQNLTNMVVS 232 (767)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~----~~~~~~~~~~~~L~~L~l~ 232 (767)
|+.|.++++..... .+..+ .......++|++|++++|..- ..+......+++|+.|+++
T Consensus 167 L~~L~l~~n~l~~~----------------~~~~l-~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 167 LKELNLANNGIGDA----------------GIRAL-AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred cCEEECcCCCCchH----------------HHHHH-HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 88888887652110 01111 111222367888888776432 1111224457888888888
Q ss_pred cCccchhhcCchhhhc----cccCcEEeEcccccc----chhccccccccccccccccccceEeecCCCCcccccC---C
Q 004225 233 RCNNLKIVLTSLIAKT----LVRLRYMKIKSCDRI----TEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCS---G 301 (767)
Q Consensus 233 ~c~~l~~~~~~~~~~~----l~~L~~L~i~~c~~l----~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~ 301 (767)
+|+ +++.....+... .+.|++|++.+|.-- ..+...... +++|+.++++++.- ..... .
T Consensus 230 ~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~--------~~~L~~l~l~~N~l-~~~~~~~~~ 299 (319)
T cd00116 230 DNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE--------KESLLELDLRGNKF-GEEGAQLLA 299 (319)
T ss_pred CCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc--------CCCccEEECCCCCC-cHHHHHHHH
Confidence 875 333222222222 368888888887521 111111111 57888888877432 21110 0
Q ss_pred CccccC-CccceEeecCC
Q 004225 302 NCAFKF-PSLERLVVDDC 318 (767)
Q Consensus 302 ~~~~~~-~~L~~L~i~~c 318 (767)
...... +.|+.+++.+-
T Consensus 300 ~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 300 ESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHhhcCCchhhcccCCC
Confidence 111233 56777776543
No 98
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=0.00026 Score=78.72 Aligned_cols=367 Identities=14% Similarity=0.097 Sum_probs=220.0
Q ss_pred cCHHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhC
Q 004225 359 VSLPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDG 437 (767)
Q Consensus 359 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 437 (767)
+.+|.+..+...+...++..|...+..+. .-....-....+.+.+++...+.. ..++...+.....+....-......
T Consensus 276 ~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~~~~~~~~~~ 354 (759)
T KOG0211|consen 276 EVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGS-WRVSYMVADKFSELSSAVGPSATRT 354 (759)
T ss_pred hccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHHHhccccCcc
Confidence 34555555555555666666666665555 111110122234555666555555 5555555555554444111122223
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCc-hhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCC
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSP-RDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP 516 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 516 (767)
..++.....+++...+.+..++.-...++.... .....+....+++.+-.+. .+.++.++...+..+..++-..+ .
T Consensus 355 ~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k 431 (759)
T KOG0211|consen 355 QLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--K 431 (759)
T ss_pred cchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--c
Confidence 345555666666555565555555555542111 1112233334456665566 67777777777666666554332 4
Q ss_pred ccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhcc
Q 004225 517 FDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKG 596 (767)
Q Consensus 517 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~ 596 (767)
........|.+...+++.++.++.+..+.+..+-...+..-........+|.+..+-.+... .++.+.++.+.-++..
T Consensus 432 ~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~w--Rvr~ail~~ip~la~q 509 (759)
T KOG0211|consen 432 ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLW--RVRLAILEYIPQLALQ 509 (759)
T ss_pred CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhH--HHHHHHHHHHHHHHHh
Confidence 44556677888888899999999999988866654443322223344577778877777766 7777777777766632
Q ss_pred CC-cce-eeh-------------hhhHHHHHHHhhhcc--CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHh
Q 004225 597 DG-FLT-QCT-------------GIAKEACRTISNITA--GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNA 659 (767)
Q Consensus 597 ~~-~~~-~~l-------------~v~~~a~~~l~nl~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl 659 (767)
.. ... ... .+++.|...+..++. |....++ ..++.++.....++...|...+.++.-+
T Consensus 510 ~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~-----~~i~k~L~~~~q~~y~~R~t~l~si~~l 584 (759)
T KOG0211|consen 510 LGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARL-----EEIPKLLAMDLQDNYLVRMTTLFSIHEL 584 (759)
T ss_pred hhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH-----HhhHHHHHHhcCcccchhhHHHHHHHHH
Confidence 22 000 000 566666666655554 2222222 3577777777777888898888888877
Q ss_pred hcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHh
Q 004225 660 ISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLK 739 (767)
Q Consensus 660 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~ 739 (767)
+.....+ +....+++.+.++..++.+.||..++..+..+...... ...+.-..+.++.+.
T Consensus 585 a~v~g~e----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----------------~~~~~~v~pll~~L~ 644 (759)
T KOG0211|consen 585 AEVLGQE----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----------------SVRDEEVLPLLETLS 644 (759)
T ss_pred HHHhccH----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----------------HHHHHHHHHHHHHhc
Confidence 6543333 33445899999999999999999999999999875432 223344466777777
Q ss_pred cCCChHHHHHHHHHHHH
Q 004225 740 RHDSNGICEKAVKILEI 756 (767)
Q Consensus 740 ~~~~~~v~~~a~~~l~~ 756 (767)
.+++.+|+-+|..+...
T Consensus 645 ~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGS 661 (759)
T ss_pred cCcccchhHHHHHHHHH
Confidence 88899998888877654
No 99
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.21 E-value=1.7e-05 Score=82.13 Aligned_cols=259 Identities=17% Similarity=0.139 Sum_probs=162.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchh--HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC-
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD--RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP- 515 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~- 515 (767)
++..++..|+++.+++|.+|+...+.++..-..+ .+.+...|. .|.+.+ ....+++.-..+.+++.+.......
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 4566777889999999999999999887311100 122222222 234444 5677888888888887776544222
Q ss_pred CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhc
Q 004225 516 PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 516 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~ 595 (767)
..--..+++|.|..++.+...+++.+.+..++.+|...++.+..--=-.+.--|+..|.+.+.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nK----------------- 744 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNK----------------- 744 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhH-----------------
Confidence 233467899999999999999999999999999998877643211001255567888888887
Q ss_pred cCCcceeehhhhHHHHHHHhhhcc--CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 004225 596 GDGFLTQCTGIAKEACRTISNITA--GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR 673 (767)
Q Consensus 596 ~~~~~~~~l~v~~~a~~~l~nl~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~ 673 (767)
++++.|...++-|+. +.. .++..|++-|+..+-..|.-...+++-.+..+.+
T Consensus 745 ---------eiRR~A~~tfG~Is~aiGPq---------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------- 798 (975)
T COG5181 745 ---------EIRRNATETFGCISRAIGPQ---------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------- 798 (975)
T ss_pred ---------HHHHhhhhhhhhHHhhcCHH---------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc--------
Confidence 555555555555544 221 2445555555555544444444444443332111
Q ss_pred cCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHH
Q 004225 674 KGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKI 753 (767)
Q Consensus 674 ~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~ 753 (767)
..+++.|+.=...++..++.-.+.|+..+++..... .-.|...+ .+.|..-+-+.++--+..|..+
T Consensus 799 fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~---------s~dYvy~i-----tPlleDAltDrD~vhRqta~nv 864 (975)
T COG5181 799 FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA---------SLDYVYSI-----TPLLEDALTDRDPVHRQTAMNV 864 (975)
T ss_pred hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH---------HHHHHHHh-----hHHHHhhhcccchHHHHHHHHH
Confidence 125566665566677888888999999888764432 22344444 4556666666776666666666
Q ss_pred HHHh
Q 004225 754 LEIY 757 (767)
Q Consensus 754 l~~~ 757 (767)
++-+
T Consensus 865 I~Hl 868 (975)
T COG5181 865 IRHL 868 (975)
T ss_pred HHHH
Confidence 6544
No 100
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.20 E-value=0.00015 Score=74.96 Aligned_cols=295 Identities=16% Similarity=0.137 Sum_probs=188.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-C-CChHHHHhcCchHHHHhhccCCC-CHHHHHHHHHHHHHHHh-hhhHHHHh
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-L-PPSEKVIQSGVVARFVEFLTRED-NPQLQLEAARALTNIAS-ENTNVVID 436 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~-~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-~~~~~~~~ 436 (767)
.+.+...+-+++.+++..+.+.++.+. + .....+.+.++--.++.-+..+. ....|++|...++.+.. ..-...+.
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~ 106 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP 106 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC
Confidence 344444555666999999999999988 3 34666667665555555555443 36788899999999887 22222235
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCC
Q 004225 437 GGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP 516 (767)
Q Consensus 437 ~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 516 (767)
.|++..++.+.++.++..+..|+.++..++-.+|+ .+...|++..+++.+ -++..++.+.++.++..+...+..++
T Consensus 107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l-~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRAL-IDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHH-HhccHhHHHHHHHHHHHHhCCcchhh
Confidence 67889999999999999999999999999988775 477999999999999 44656688999999999998875555
Q ss_pred ccchhchHHHHHHHhcCC-------CH--HHHHHHHHHHHhhccCChhHHHHHHh-cCcHHHHHHHhcCCCCCCcccchH
Q 004225 517 FDQVRPALPALAQLVHSN-------DN--DVLRYACEALSCLSDGTNDKIQAVIE-ADVCPRLVKLLLHPLPFPFGLTPP 586 (767)
Q Consensus 517 ~~~~~~~i~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~~~v~~~a 586 (767)
.....--+..++.-+.+. +. +....+..++..+.+.=+...-.-.+ ..++..++..|..+.+ +++...
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~--~ir~~I 260 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNP--EIRKAI 260 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCH--HHHHHH
Confidence 444433344444333222 22 34445555555544332211111111 1366778888888877 788888
Q ss_pred HHHHhhhhccCCcc-eeeh-------hh-hHHHHHHHh------------------hhccCC-HHHHHHHHHcCCHHHHH
Q 004225 587 LWTVRYIVKGDGFL-TQCT-------GI-AKEACRTIS------------------NITAGN-REQIQVVIDAGVIGPLV 638 (767)
Q Consensus 587 ~~~L~~l~~~~~~~-~~~l-------~v-~~~a~~~l~------------------nl~~~~-~~~~~~~~~~~~i~~L~ 638 (767)
+..+..+..-.... .... .. +..--|.+. ++.... .-....++++|.++.|+
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~ 340 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALV 340 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHH
Confidence 87777776322211 1100 00 000001111 111100 01122456899999999
Q ss_pred HHHhcC-CchhHHHHHHHHHHhhc
Q 004225 639 DLLQNA-EFFTKKEAARAISNAIS 661 (767)
Q Consensus 639 ~ll~~~-~~~v~~~a~~~L~nl~~ 661 (767)
++.... +..+...|...|+.+..
T Consensus 341 ~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 341 ELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHH
Confidence 999987 88899999988887653
No 101
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.0021 Score=71.21 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhc--CCChHHH-----HhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHH
Q 004225 374 GLQLEATTWFRKLL--LPPSEKV-----IQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFV 444 (767)
Q Consensus 374 ~~~~~a~~~L~~l~--~~~~~~i-----~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~ 444 (767)
+-...++.+|+++. .+..-.+ .--|..+.++.++....++.++..|..++..+.. +....++..|.+..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 34566888999988 4433322 2347788888888876668999999999888777 7788899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 445 KLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 445 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
.+|.+ -|..|..++.+|..+++. ++......+.|++..+..++-.+.++..|.+++..++.+..+.
T Consensus 1820 ~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 98864 466888999999999966 5555666788888888888766778888888999988887665
No 102
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=2.9e-05 Score=83.39 Aligned_cols=178 Identities=19% Similarity=0.204 Sum_probs=133.6
Q ss_pred cCHHHHHhhhcCCCHHHHHHHHHHHHHhc-CC-ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHh
Q 004225 359 VSLPGMLAGVWSDDSGLQLEATTWFRKLL-LP-PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVID 436 (767)
Q Consensus 359 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 436 (767)
+.++.+-..+.+..+..+..|++-.-.-. .. .. .++.+.+++..+..+ .+.+.-.---+.+++..+....
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~Dv-----SslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~a-- 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDV-----SSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDLA-- 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcch-----HhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchHH--
Confidence 35677767776666667777665544333 22 11 245778888888888 8888888888888887222222
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCC
Q 004225 437 GGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP 516 (767)
Q Consensus 437 ~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 516 (767)
.++++.++.=..++++.+|.-|+..++.+-.+ .... -...++...+ ++.++.+|+.++.++.++-..+ .+
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~e-----y~~~Pl~~~l-~d~~~yvRktaa~~vakl~~~~--~~ 154 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITE-----YLCDPLLKCL-KDDDPYVRKTAAVCVAKLFDID--PD 154 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHH-----HHHHHHHHhc-cCCChhHHHHHHHHHHHhhcCC--hh
Confidence 25677888877889999999999988877643 1222 2567888899 8999999999999999987664 56
Q ss_pred ccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh
Q 004225 517 FDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTN 554 (767)
Q Consensus 517 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 554 (767)
.....|.++.|..++.++++.|..+|+.++..+.+..+
T Consensus 155 ~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 155 LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 67778999999999999999999999999999986654
No 103
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.18 E-value=0.00043 Score=72.46 Aligned_cols=245 Identities=17% Similarity=0.037 Sum_probs=164.7
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVL 477 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 477 (767)
..++.++..+..+.++.+...++.++..... ..++..++..|.+.++.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~---------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG---------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----------
Confidence 4578888888544437777666655542211 1137899999999999999999999985442
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHH
Q 004225 478 SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKI 557 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 557 (767)
.++.+.|+.++ .+.++.++..++.++...-. ...+.+..++++.++.++..++++++.+...
T Consensus 116 -~~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----- 177 (410)
T TIGR02270 116 -RQAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR----- 177 (410)
T ss_pred -hHHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----
Confidence 23567888888 88899999999888877322 2456788888999999999999999887643
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHH
Q 004225 558 QAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPL 637 (767)
Q Consensus 558 ~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L 637 (767)
...+.|...+.+.++ .|+..|+++++.+-. +. .+..+
T Consensus 178 ------~a~~~L~~al~d~~~--------------------------~VR~aA~~al~~lG~--~~---------A~~~l 214 (410)
T TIGR02270 178 ------LSESTLRLYLRDSDP--------------------------EVRFAALEAGLLAGS--RL---------AWGVC 214 (410)
T ss_pred ------cchHHHHHHHcCCCH--------------------------HHHHHHHHHHHHcCC--Hh---------HHHHH
Confidence 255667778889888 666666666654422 21 23445
Q ss_pred HHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccc
Q 004225 638 VDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANR 717 (767)
Q Consensus 638 ~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~ 717 (767)
..............+..++... +.+ .+++.|..+++++. ++..+++++..+-.
T Consensus 215 ~~~~~~~g~~~~~~l~~~lal~---~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~------------- 267 (410)
T TIGR02270 215 RRFQVLEGGPHRQRLLVLLAVA---GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD------------- 267 (410)
T ss_pred HHHHhccCccHHHHHHHHHHhC---Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC-------------
Confidence 5544444444544444444433 123 35677777887644 88889999886552
Q ss_pred cccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 004225 718 YFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 718 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 761 (767)
-..++.|.+.+.++. +...|-+.++++...+
T Consensus 268 -----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 268 -----------VEAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred -----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 123445555555443 8889999998887654
No 104
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00046 Score=66.12 Aligned_cols=271 Identities=15% Similarity=0.139 Sum_probs=158.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh--cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 441 PIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLS--EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 441 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
..++.++.+.+|.++..|...+..++.. + . +.+.. .-.++.+.+++ ...++ .+.|+.++.|++.+..-.+..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~-~-~~~~~~~~~~lk~l~qL~-~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-G-L-QSLSKYSEALLKDLTQLL-KDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-c-h-hhhccchhhhHHHHHHHc-cCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 4578899999999999999888888865 2 1 22222 22577788888 44444 778999999999886333333
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHh-c----CcHHHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIE-A----DVCPRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~----~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
... .+..++..+.+........++..++|+++..+........ . ..+..++...-+.+. . ...-
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~--n-~~a~------- 148 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSY--N-AYAE------- 148 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccc--c-cccc-------
Confidence 333 7777777777777778888999999999876644332221 1 223333333333322 1 0000
Q ss_pred hccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCC--HHHHHHHHhcCCchhHHH-HHHHHHHhhcCCCHHHHHH
Q 004225 594 VKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGV--IGPLVDLLQNAEFFTKKE-AARAISNAISGGTHEQIKY 670 (767)
Q Consensus 594 ~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~--i~~L~~ll~~~~~~v~~~-a~~~L~nl~~~~~~~~~~~ 670 (767)
....+.++.|++.- ...+..+.+... .+.+..+-. .+..+|+. .+.+|.|++... +.+ ..
T Consensus 149 -------------f~ylA~vf~nls~~-~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~-~~h-~~ 211 (353)
T KOG2973|consen 149 -------------FHYLAPVFANLSQF-EAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA-KLH-EV 211 (353)
T ss_pred -------------hhHHHHHHHHHhhh-hhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc-hhH-HH
Confidence 11122333333332 223333333322 122222222 34444443 566777766542 111 11
Q ss_pred HHHc--C---------------------ChHHHHhhhc-----CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHH
Q 004225 671 LVRK--G---------------------CIKPLCDLLL-----YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHY 722 (767)
Q Consensus 671 l~~~--~---------------------~i~~L~~ll~-----~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~ 722 (767)
++.. + .++.=.+++. ++++++++.-+.+|.-++... .-
T Consensus 212 lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~--------------~G 277 (353)
T KOG2973|consen 212 LLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR--------------AG 277 (353)
T ss_pred HhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh--------------Hh
Confidence 2210 1 1111113332 468899999999999998532 34
Q ss_pred HHHHHhhchHHHHHHHh-cCCChHHHHHHHHHHHHhcC
Q 004225 723 ARLVEAAEGFKKIEDLK-RHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 723 ~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~ 759 (767)
++.++..|+.+.+..+= ..+++++++....+..-...
T Consensus 278 Re~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 278 REVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 78899999999999883 44788888877777765555
No 105
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=5.1e-05 Score=78.11 Aligned_cols=297 Identities=16% Similarity=0.102 Sum_probs=186.4
Q ss_pred HhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchh
Q 004225 395 IQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472 (767)
Q Consensus 395 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 472 (767)
.-.+.+++.+..+.+.+ ..++..|+..+.|++. ..........+...+.++-.+.+..++. ++..+-.+..+-...
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccc
Confidence 45578889999999888 8999999999999998 3333334455667788877777777654 444444444221111
Q ss_pred HH-HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 004225 473 RD-LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSD 551 (767)
Q Consensus 473 ~~-~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 551 (767)
++ .+.=.+.++.+-..+ ...++.+|...+.-+..+-..++....-....+++.|..++.+++.+++..+=.+++++-.
T Consensus 159 ~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 11 121122444444444 5568889988888877776554444444567788999999999999998777666665542
Q ss_pred ---CChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc---------
Q 004225 552 ---GTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA--------- 619 (767)
Q Consensus 552 ---~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~--------- 619 (767)
.++... --.+.++.++.-+.++++ .++..|+.-+..+..-.+. .+......+++++..
T Consensus 238 eI~s~P~s~---d~~~~i~vlv~~l~ss~~--~iq~~al~Wi~efV~i~g~-----~~l~~~s~il~~iLpc~s~~e~~~ 307 (675)
T KOG0212|consen 238 EIRSSPSSM---DYDDMINVLVPHLQSSEP--EIQLKALTWIQEFVKIPGR-----DLLLYLSGILTAILPCLSDTEEMS 307 (675)
T ss_pred HHhcCcccc---CcccchhhccccccCCcH--HHHHHHHHHHHHHhcCCCc-----chhhhhhhhhhhcccCCCCCcccc
Confidence 222111 113577888888888888 8887776666655533221 111111111111111
Q ss_pred ----------------CCHHHHHHHHHc-CCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 004225 620 ----------------GNREQIQVVIDA-GVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCD 682 (767)
Q Consensus 620 ----------------~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ 682 (767)
..+...+. ++. .+++.+.+.+.+...+.|..+..-+..+-.. .+.+.- .....++..|..
T Consensus 308 i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~-~p~ql~-~h~~~if~tLL~ 384 (675)
T KOG0212|consen 308 IKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK-APGQLL-VHNDSIFLTLLK 384 (675)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh-Ccchhh-hhccHHHHHHHH
Confidence 00111101 121 2467777888888888888888666666554 233322 233568888999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhhh
Q 004225 683 LLLYADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 683 ll~~~~~~v~~~al~aL~~l~~~~~ 707 (767)
-+.+.+.++...++..+.+++....
T Consensus 385 tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 385 TLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred hhcCchhHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999997543
No 106
>PF05536 Neurochondrin: Neurochondrin
Probab=98.16 E-value=0.00098 Score=72.87 Aligned_cols=357 Identities=17% Similarity=0.132 Sum_probs=219.8
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc-CCC-----hHHHHhcCchHHHHhhccCCC------CHHHHHHHHHHHHHHH
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL-LPP-----SEKVIQSGVVARFVEFLTRED------NPQLQLEAARALTNIA 427 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~-----~~~i~~~g~i~~L~~ll~~~~------~~~~~~~a~~~L~~l~ 427 (767)
.+...+.+|++.+.+.++.++..+.++. ..+ .+.+.+.=+.+-+-.+|++.. ....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4677788999999899999999999999 222 234556555677777777621 1567777888888888
Q ss_pred h--hh--hHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHH
Q 004225 428 S--EN--TNVVIDGGAVPIFVKLLSSPSD-DVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNAT 502 (767)
Q Consensus 428 ~--~~--~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~ 502 (767)
. +. ...++ +-+|.|+.++...+. .+...|..+|..++ ..++.++.+++.|+++.+++.+. + .+...+.++
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~-~-~~~~~E~Al 160 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIP-N-QSFQMEIAL 160 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHH-h-CcchHHHHH
Confidence 8 22 23333 569999999988665 89999999999999 55788899999999999999993 3 566788888
Q ss_pred HHHHhhcCCCCC----CCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhH-HH----HHHhcCcHHHHHHHh
Q 004225 503 KTLSRFCQGKPE----PPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDK-IQ----AVIEADVCPRLVKLL 573 (767)
Q Consensus 503 ~~L~~l~~~~~~----~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~----~~~~~~~~~~L~~lL 573 (767)
.++.++...... ........+++.+...+.......+..++..+..+-...+.. .. .-.-..+...+..++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 888887765421 122223455666666666666667777888888877555211 00 011123455566666
Q ss_pred cCCCCCCcccchHHHHHhhhhccC--------Cc--ceeeh--------------------------------------h
Q 004225 574 LHPLPFPFGLTPPLWTVRYIVKGD--------GF--LTQCT--------------------------------------G 605 (767)
Q Consensus 574 ~~~~~~~~v~~~a~~~L~~l~~~~--------~~--~~~~l--------------------------------------~ 605 (767)
++.-. ..-+.+|+...+.+.+.. +. ..+.. .
T Consensus 241 ~sr~~-~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ 319 (543)
T PF05536_consen 241 QSRLT-PSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFS 319 (543)
T ss_pred hcCCC-HHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHH
Confidence 65433 255666666666554211 11 11111 2
Q ss_pred hhHHHHHHHhhhccC-----CHHHHHHHHH--cCCHHHHHHHHhcC------CchhHHHHHHHHHHhhcCCCHHHHHHHH
Q 004225 606 IAKEACRTISNITAG-----NREQIQVVID--AGVIGPLVDLLQNA------EFFTKKEAARAISNAISGGTHEQIKYLV 672 (767)
Q Consensus 606 v~~~a~~~l~nl~~~-----~~~~~~~~~~--~~~i~~L~~ll~~~------~~~v~~~a~~~L~nl~~~~~~~~~~~l~ 672 (767)
+.+..+..+.+-... .++....+.. .+.+..++++|+.. ++...-.++.+|+.+....+......+
T Consensus 320 ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v- 398 (543)
T PF05536_consen 320 ILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV- 398 (543)
T ss_pred HHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH-
Confidence 333333333332221 2333333332 24566666666543 223566678888887776333323332
Q ss_pred HcCChHHHHhhhcCCC----------HHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHH
Q 004225 673 RKGCIKPLCDLLLYAD----------PEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDL 738 (767)
Q Consensus 673 ~~~~i~~L~~ll~~~~----------~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l 738 (767)
.+.++.++++.+... .+.+.-.+=+|..+... +..++.+...|+.+.+.+.
T Consensus 399 -~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e--------------~~gr~~l~~~~g~~~l~~~ 459 (543)
T PF05536_consen 399 -YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE--------------EEGRKILLSNGGWKLLCDD 459 (543)
T ss_pred -HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc--------------HHHHHHHHhCCcHHHHHHH
Confidence 467888888876422 24555566666666642 3346667777776665543
No 107
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.16 E-value=7.2e-08 Score=83.24 Aligned_cols=82 Identities=26% Similarity=0.454 Sum_probs=49.6
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
+.+.+.|.+++. +++.+||. + ..+.+|+.|+++++. ++++ +.+++.+|+|+.|++. +.++...|.+
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppn-i-a~l~nlevln~~nnq-ie~l---------p~~issl~klr~lnvg-mnrl~~lprg 97 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPN-I-AELKNLEVLNLSNNQ-IEEL---------PTSISSLPKLRILNVG-MNRLNILPRG 97 (264)
T ss_pred hhhhhhhhcccC-ceeecCCc-H-HHhhhhhhhhcccch-hhhc---------Chhhhhchhhhheecc-hhhhhcCccc
Confidence 345666677764 35555433 2 467777777776653 4444 5666777777777753 5556555554
Q ss_pred CCcccCCCCccEEEeccCC
Q 004225 85 DLDILEFPSLKELRISKCP 103 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~ 103 (767)
..+||-|+.|++.+..
T Consensus 98 ---fgs~p~levldltynn 113 (264)
T KOG0617|consen 98 ---FGSFPALEVLDLTYNN 113 (264)
T ss_pred ---cCCCchhhhhhccccc
Confidence 3566777777665543
No 108
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=7e-05 Score=78.56 Aligned_cols=241 Identities=12% Similarity=0.078 Sum_probs=160.3
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHH---hhccCCh---
Q 004225 481 ALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALS---CLSDGTN--- 554 (767)
Q Consensus 481 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~---~l~~~~~--- 554 (767)
+...++.+. .+.|..++.+|+.++..+.... ..........+.++.+++..||.+|+..+. |.+-...
T Consensus 199 ~~~~l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 334466777 8888999999999988888642 223345566778889999999999865554 4442111
Q ss_pred -hHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeeh-------hhh------H--HHHHHHhhhc
Q 004225 555 -DKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT-------GIA------K--EACRTISNIT 618 (767)
Q Consensus 555 -~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-------~v~------~--~a~~~l~nl~ 618 (767)
+..+ ..+ .++..+...+.+-+. .|+..|.+.+|.+.+-+++..+.. ..+ + .+...=+..+
T Consensus 273 ~~e~k-l~D-~aF~~vC~~v~D~sl--~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 273 SEEEK-LKD-AAFSSVCRAVRDRSL--SVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWS 348 (823)
T ss_pred hhhhh-hHH-HHHHHHHHHHhcCce--eeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcc
Confidence 1222 222 478889999999999 999999999999876554333222 000 0 0111111111
Q ss_pred c-----------CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC
Q 004225 619 A-----------GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA 687 (767)
Q Consensus 619 ~-----------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 687 (767)
. ..++....++.+|.=..++.-+++.-.+||++|+..++.++.. .+..+.. .+..|++++++.
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE 422 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDE 422 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccH
Confidence 1 0112223456667767777777777789999999999999986 5666555 788999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHH
Q 004225 688 DPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEI 756 (767)
Q Consensus 688 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 756 (767)
..+||..|+.+|..++....- ++..++.+..-+.+.++++++.+.++|.+
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~i-------------------~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLAI-------------------REEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHHHHhee-------------------cHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999999875321 22224444555666777777766666654
No 109
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00037 Score=66.70 Aligned_cols=292 Identities=14% Similarity=0.111 Sum_probs=164.7
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 004225 401 ARFVEFLTREDNPQLQLEAARALTNIASENTNVVI--DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLS 478 (767)
Q Consensus 401 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 478 (767)
.-+++++.+.+ |.++..|+..+..+....-+.+. +...++.+.+++...++ ...|+.++.|++.+ +..++.+++
T Consensus 6 ~elv~ll~~~s-P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLS-PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCC-hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence 34566777777 77777777777666652111111 23356667777776555 56777888888854 556666665
Q ss_pred cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc-------hhchHHHHHHHhcCCC--HHHHHHHHHHHHhh
Q 004225 479 EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ-------VRPALPALAQLVHSND--NDVLRYACEALSCL 549 (767)
Q Consensus 479 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~-------~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l 549 (767)
. .+..++..+ .++.....+..+..++|+++.+....... ..+.+.....+..++- ..-..+.+.+++|+
T Consensus 82 ~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 82 D-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred H-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 5 666666666 55556677777778888887763221111 1344444444444322 23455667778888
Q ss_pred ccCChhHHHHHHhcC--cHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHH-HHHhhhccCCHHHHH
Q 004225 550 SDGTNDKIQAVIEAD--VCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEAC-RTISNITAGNREQIQ 626 (767)
Q Consensus 550 ~~~~~~~~~~~~~~~--~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~-~~l~nl~~~~~~~~~ 626 (767)
++..... ..+.+.. ....+..+-+ .+. ..-+...+.+|.|.+.....+...+....... .++.-++. ..+..+
T Consensus 160 s~~~~gR-~l~~~~k~~p~~kll~ft~-~~s-~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlag-pee~sE 235 (353)
T KOG2973|consen 160 SQFEAGR-KLLLEPKRFPDQKLLPFTS-EDS-QVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAG-PEELSE 235 (353)
T ss_pred hhhhhhh-hHhcchhhhhHhhhhcccc-cch-hhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCC-ccccCH
Confidence 7665332 2232222 2223333333 333 02334466777787765554444332222222 22333332 122111
Q ss_pred HHHHcCCHHHHHHHHh-----cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC-CCHHHHHHHHHHHH
Q 004225 627 VVIDAGVIGPLVDLLQ-----NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY-ADPEIVTICLKGLE 700 (767)
Q Consensus 627 ~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~aL~ 700 (767)
.=+. + +|.=.+++. .+++.+++.-..+|.-++. +...++.+.+.|+.+.+-++=+. +++++++++-....
T Consensus 236 Edm~-~-LP~eLQyLp~dKeRepdpdIrk~llEai~lLca--T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq 311 (353)
T KOG2973|consen 236 EDMA-K-LPVELQYLPEDKEREPDPDIRKMLLEALLLLCA--TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQ 311 (353)
T ss_pred HHHh-c-CCHhhhcCCccccCCCChHHHHHHHHHHHHHHh--hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1111 1 222225554 3467899999999988887 57788888888888877776654 67888887777777
Q ss_pred HHHHhh
Q 004225 701 NILKVG 706 (767)
Q Consensus 701 ~l~~~~ 706 (767)
.+++..
T Consensus 312 ~Lv~~e 317 (353)
T KOG2973|consen 312 MLVRLE 317 (353)
T ss_pred HHHhcc
Confidence 777643
No 110
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0027 Score=68.44 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=126.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGG 438 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 438 (767)
-..+.++|.|.....+..|.+.+-.+. -.+.. ...|..++...+.+ .+++...---|..+|.++.+... =
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS-----~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLAL--L 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS-----LLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLAL--L 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH-----HHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCcee--e
Confidence 345678899999999999999988877 33332 34688888888988 89999888888888873332211 2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
-+..+.+.|.++|+.+|..|+.++..+-.. ++..=++-++-+.. .+.++.||+.|+-|+-.+-.-++....
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~e~k~- 179 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDPEQKD- 179 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCChhhHH-
Confidence 478899999999999999999998876532 11100112222333 788999999999999999877654333
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
..+..+-.++.+.++-|.-.|+.++-.+|-.
T Consensus 180 ---qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 180 ---QLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred ---HHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 4566677788999999999999988888754
No 111
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=7e-05 Score=76.59 Aligned_cols=267 Identities=13% Similarity=0.171 Sum_probs=177.9
Q ss_pred HHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC
Q 004225 392 EKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARS 468 (767)
Q Consensus 392 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 468 (767)
.-+.+..+++.|+++|..++ ..+..-+...+.|..- ..+..+++.|++..++.++.+.|..+|....|.+..+..+
T Consensus 425 TgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn 503 (743)
T COG5369 425 TGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN 503 (743)
T ss_pred hhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc
Confidence 33456678999999999877 5566666666666666 5577888999999999999999999999999999999977
Q ss_pred CchhHH-HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CC---CCccch----hchHHHHHHHhcCCCHHHH
Q 004225 469 SPRDRD-LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PE---PPFDQV----RPALPALAQLVHSNDNDVL 539 (767)
Q Consensus 469 ~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~---~~~~~~----~~~i~~L~~ll~~~~~~v~ 539 (767)
..+..+ .++..-++..++.+. .++...++++++..+.|+..+. .+ .+.... .-....++..+...++-..
T Consensus 504 cq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i 582 (743)
T COG5369 504 CQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI 582 (743)
T ss_pred CcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence 665422 345556789999999 8999999999999999998865 21 111111 2245556666666666666
Q ss_pred HHHHHHHHhhccCChhHHHHHHhc-CcHHHHHHHh----cC-----CCCCCcccchHHHHHhhhhccCCcceeeh-----
Q 004225 540 RYACEALSCLSDGTNDKIQAVIEA-DVCPRLVKLL----LH-----PLPFPFGLTPPLWTVRYIVKGDGFLTQCT----- 604 (767)
Q Consensus 540 ~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL----~~-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~l----- 604 (767)
...+..+.+++..+++....+.+. ..+..+.+.| .. +.....+..+......++..+.+......
T Consensus 583 ~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~ 662 (743)
T COG5369 583 LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPH 662 (743)
T ss_pred hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCC
Confidence 667888888887766555444432 3333333333 22 11112344444444444443222111111
Q ss_pred -------------hhhHHHHHHHhhhcc---CC------HHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhh
Q 004225 605 -------------GIAKEACRTISNITA---GN------REQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAI 660 (767)
Q Consensus 605 -------------~v~~~a~~~l~nl~~---~~------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~ 660 (767)
++..+..|.+.|+.- +. .+.++.+.+.|+-+.+..+....+..||..+-.+|.++-
T Consensus 663 ~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 663 LDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred ccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 566778888877643 22 255566677777777777777778899999999998863
No 112
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=1.3e-05 Score=81.95 Aligned_cols=162 Identities=14% Similarity=0.247 Sum_probs=83.2
Q ss_pred CcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccc
Q 004225 30 SFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRT 109 (767)
Q Consensus 30 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 109 (767)
.+.++++|++++| .++.++ ...++|++|.+.+|.+++.+|.. -.++|++|++.+|..+..
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP------------~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~s-- 109 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP------------VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEISG-- 109 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC------------CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCcccccc--
Confidence 4566777777776 455541 11335777777777777666531 135777777777765543
Q ss_pred cccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhc-cccceeeecCCCCCCCcccccCCceeeeeecccc
Q 004225 110 TSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRL-HTMKVLQIGGYSASLPYEKVENGMWVEIREAFHL 188 (767)
Q Consensus 110 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l 188 (767)
+ .++|++|++.++.. .. +..+ ++|+.|.+.++.. .
T Consensus 110 ---L----P~sLe~L~L~~n~~-~~----------------L~~LPssLk~L~I~~~n~--------------------~ 145 (426)
T PRK15386 110 ---L----PESVRSLEIKGSAT-DS----------------IKNVPNGLTSLSINSYNP--------------------E 145 (426)
T ss_pred ---c----ccccceEEeCCCCC-cc----------------cccCcchHhheecccccc--------------------c
Confidence 1 24566666653221 00 1111 1344444332110 0
Q ss_pred cchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccch-hhcCchhhhccccCcEEeEcccccc
Q 004225 189 EHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLK-IVLTSLIAKTLVRLRYMKIKSCDRI 263 (767)
Q Consensus 189 ~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~i~~c~~l 263 (767)
... ......+++|++|.+.+|..+. ++ .....+|+.|.++.+.... .+....+ .+++ .|.+.+|-.+
T Consensus 146 ~~~-~lp~~LPsSLk~L~Is~c~~i~-LP--~~LP~SLk~L~ls~n~~~sLeI~~~sL---P~nl-~L~f~n~lkL 213 (426)
T PRK15386 146 NQA-RIDNLISPSLKTLSLTGCSNII-LP--EKLPESLQSITLHIEQKTTWNISFEGF---PDGL-DIDLQNSVLL 213 (426)
T ss_pred ccc-ccccccCCcccEEEecCCCccc-Cc--ccccccCcEEEecccccccccCccccc---cccc-Eechhhhccc
Confidence 000 0011235789999999888653 12 2234689999987642111 1111111 1445 7888777544
No 113
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=0.0001 Score=81.18 Aligned_cols=194 Identities=17% Similarity=0.172 Sum_probs=156.2
Q ss_pred HhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc---CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---h
Q 004225 356 QKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL---LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---E 429 (767)
Q Consensus 356 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~ 429 (767)
...+++|-+++.|-| .--+..|+..|.++. ..-...-..-|+.|..+++|+++. .+++-.-+.+..+|.. .
T Consensus 469 ~PPeQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~S 545 (1387)
T KOG1517|consen 469 TPPEQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPS 545 (1387)
T ss_pred CChHhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCch
Confidence 344567777777665 234677888888888 333555567899999999999999 8999999999999998 5
Q ss_pred hhHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHH
Q 004225 430 NTNVVIDGGAVPIFVKLLSS---PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLS 506 (767)
Q Consensus 430 ~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~ 506 (767)
.+..+++.++-.++++.|.. -+++-|.-|+.+|..+..+.+...+...+.+.+..-+..+.+.+.+-++..++-+|+
T Consensus 546 CQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 546 CQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLG 625 (1387)
T ss_pred hHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 56667778888899998876 246888889999999999888888889999999988888843346788899999999
Q ss_pred hhcCCCCCCCcc-chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 507 RFCQGKPEPPFD-QVRPALPALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 507 ~l~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
.+=.+-+..+.. .-..+...|..++.++-++||.+|+.+|..+..+
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 998776444443 3457888899999999999999999999998875
No 114
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.07 E-value=0.0011 Score=68.61 Aligned_cols=285 Identities=19% Similarity=0.185 Sum_probs=183.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
.+.+..++-+++.+++..+..++..+..+. ...+.+.+.+.--.++.-+. +.....-|++|+..+..+...... ...
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence 344444454555999999999999999764 44555666665445555553 334556788999999988866422 223
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
...+++..++.+..+.+...+..|+.+++.++-.+++ .+...|++..+.+.+.++.. ++....+.++-++...
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~--~~~~~l~~~lL~lLd~-- 177 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSF--SISESLLDTLLYLLDS-- 177 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccH--hHHHHHHHHHHHHhCC--
Confidence 4678999999999999999999999999999987764 35678999999999998666 4444444444444332
Q ss_pred cceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC-------Cc--hhHHHHHHHHHHhhcCCCHHHHH
Q 004225 599 FLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA-------EF--FTKKEAARAISNAISGGTHEQIK 669 (767)
Q Consensus 599 ~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~--~v~~~a~~~L~nl~~~~~~~~~~ 669 (767)
+..++++...--++.++.-+.+. +. +.-+.+..++..+... ..+.-
T Consensus 178 -----------------------p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs--W~GLl 232 (371)
T PF14664_consen 178 -----------------------PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS--WPGLL 232 (371)
T ss_pred -----------------------cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc--CCcee
Confidence 33333333322233333332222 22 2344455566555542 23333
Q ss_pred HHHHc--CChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhh--------hccCCc------------------------
Q 004225 670 YLVRK--GCIKPLCDLLLYADPEIVTICLKGLENILKVGEAE--------MNTGTA------------------------ 715 (767)
Q Consensus 670 ~l~~~--~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~--------~~~~~~------------------------ 715 (767)
.+... .+++.|++.+..++++++...+..+..++.-.... ......
T Consensus 233 ~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~ 312 (371)
T PF14664_consen 233 YLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS 312 (371)
T ss_pred eeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc
Confidence 33322 47788888888899999999999998886421000 000000
Q ss_pred ---cccccHH----HHHHHhhchHHHHHHHhcCC-ChHHHHHHHHHHHHhc
Q 004225 716 ---NRYFNHY----ARLVEAAEGFKKIEDLKRHD-SNGICEKAVKILEIYW 758 (767)
Q Consensus 716 ---~~~~~~~----~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~ 758 (767)
.+-.++| ...+.++|.++.|.++..+. ++.+..+|.-+|.+++
T Consensus 313 ~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 313 SKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred cccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 0011222 33457999999999998886 8999999999998775
No 115
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.0031 Score=65.52 Aligned_cols=361 Identities=14% Similarity=0.173 Sum_probs=195.0
Q ss_pred hhcccchHHHHhhcCHHHHHhhh---cCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHH---HH
Q 004225 346 AWKDDLNTTIQKLVSLPGMLAGV---WSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQL---EA 419 (767)
Q Consensus 346 ~~~~~~~~~~~~~~~i~~l~~~l---~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~---~a 419 (767)
.|-.+.+.....+.+.|---... ..+++-.+..|+..|..+- ..+.+.. ..+++.+..+..-.-+. .-
T Consensus 174 rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~k--r~dkma~----lklv~hf~~n~smknq~a~V~l 247 (898)
T COG5240 174 RWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSK--RTDKMAQ----LKLVEHFRGNASMKNQLAGVLL 247 (898)
T ss_pred HHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHh--cccHHHH----HHHHHHhhcccccccchhheeh
Confidence 45444444444443343321111 2456778888888777643 2233333 33444444333111111 11
Q ss_pred HHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHH
Q 004225 420 ARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLR 499 (767)
Q Consensus 420 ~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 499 (767)
.++...+..++.+... ...|.|-.++++.-..+...++.+++.++..+- ....++ ..++.|-.+| .++....|-
T Consensus 248 vr~~~~ll~~n~q~~~--q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL-~s~rv~~rF 321 (898)
T COG5240 248 VRATVELLKENSQALL--QLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFL-KSTRVVLRF 321 (898)
T ss_pred HHHHHHHHHhChHHHH--HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHH-hcchHHHHH
Confidence 2222222223333222 235666677777778899999999999886541 111222 2566777777 788888999
Q ss_pred HHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCC
Q 004225 500 NATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPF 579 (767)
Q Consensus 500 ~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 579 (767)
.|+.+|..++...|..-.. +-+-+-.++.+.+..+...|+.+|.. .+.++.+..++. .++.++.=+.++-.
T Consensus 322 sA~Riln~lam~~P~kv~v----cN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~SD~FK- 392 (898)
T COG5240 322 SAMRILNQLAMKYPQKVSV----CNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMSDGFK- 392 (898)
T ss_pred HHHHHHHHHHhhCCceeee----cChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhccCce-
Confidence 9999999999886553222 22334566677777777777776643 455566666543 45555555555444
Q ss_pred CcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc--CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHH
Q 004225 580 PFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA--GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAIS 657 (767)
Q Consensus 580 ~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 657 (767)
-+...|++.|....- .-+..-+..++++.. +.-+-..++ ++.+..+++ ..++.|..|...|+
T Consensus 393 -iI~ida~rsLsl~Fp---------~k~~s~l~FL~~~L~~eGg~eFK~~~-----Vdaisd~~~-~~p~skEraLe~LC 456 (898)
T COG5240 393 -IIAIDALRSLSLLFP---------SKKLSYLDFLGSSLLQEGGLEFKKYM-----VDAISDAME-NDPDSKERALEVLC 456 (898)
T ss_pred -EEeHHHHHHHHhhCc---------HHHHHHHHHHHHHHHhcccchHHHHH-----HHHHHHHHh-hCchHHHHHHHHHH
Confidence 556666666655542 112222333333332 222222222 223333332 24556666666666
Q ss_pred HhhcCCCHHHHH-HHHH----c--------CChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHH
Q 004225 658 NAISGGTHEQIK-YLVR----K--------GCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYAR 724 (767)
Q Consensus 658 nl~~~~~~~~~~-~l~~----~--------~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~ 724 (767)
.+..++....+. .++. . ..+..+..-+--.|.-+|.+|..||..+.-..++.-
T Consensus 457 ~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~-------------- 522 (898)
T COG5240 457 TFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV-------------- 522 (898)
T ss_pred HHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc--------------
Confidence 666544322221 1110 0 122222222223466788889999988775443221
Q ss_pred HHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 725 LVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 725 ~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
........+.+++++++.+|+++|.-+++.+-.
T Consensus 523 --~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 523 --SPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred --cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 122335567889999999999999999987643
No 116
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00054 Score=65.94 Aligned_cols=233 Identities=13% Similarity=0.144 Sum_probs=155.8
Q ss_pred cCHHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHH--HhhccCCCCHHHHHHHHHHHHHHHh---hhh
Q 004225 359 VSLPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARF--VEFLTREDNPQLQLEAARALTNIAS---ENT 431 (767)
Q Consensus 359 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L--~~ll~~~~~~~~~~~a~~~L~~l~~---~~~ 431 (767)
+-+|.++..+..+|.++...|...+.+++ ......+.+......+ ..+....+ .-.|......+..+.+ +..
T Consensus 128 eilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpesa 206 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESA 206 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHH
Confidence 44788889999999999999999999999 4446666666655544 22323333 4677888888888888 666
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHhhc
Q 004225 432 NVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~ 509 (767)
......|.+..|..-++- .|.-++..++.....++.. ...++.+.+.|.|+.+.+++. .+.++.-.-.++...+.+-
T Consensus 207 neckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 207 NECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred hHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 777788999988887776 7888999999999999853 567788889999999999995 3334444433555555554
Q ss_pred CCCCCCC---ccch---hchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcC--cHHHHHHHhcCCCCCCc
Q 004225 510 QGKPEPP---FDQV---RPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEAD--VCPRLVKLLLHPLPFPF 581 (767)
Q Consensus 510 ~~~~~~~---~~~~---~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~~L~~lL~~~~~~~~ 581 (767)
......+ .... --++.-...++..+|+..+..|+.+++.+..+.. -.+.+...| ....++.-..+.+. ..
T Consensus 286 gkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte-GadlllkTgppaaehllarafdqna-ha 363 (524)
T KOG4413|consen 286 GKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNA-HA 363 (524)
T ss_pred cchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcccc-cc
Confidence 3321111 1111 1234444566678899999999999999876653 333343333 23333333333322 15
Q ss_pred ccchHHHHHhhhhc
Q 004225 582 GLTPPLWTVRYIVK 595 (767)
Q Consensus 582 v~~~a~~~L~~l~~ 595 (767)
-+..+++++.+++.
T Consensus 364 kqeaaihaLaaIag 377 (524)
T KOG4413|consen 364 KQEAAIHALAAIAG 377 (524)
T ss_pred hHHHHHHHHHHhhc
Confidence 56778888888874
No 117
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.04 E-value=0.0011 Score=72.74 Aligned_cols=329 Identities=16% Similarity=0.128 Sum_probs=194.7
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc------CCC----hHHHHhcCchHHHHhhccC-CCCHHHHHHHHHHHHHHHhh
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL------LPP----SEKVIQSGVVARFVEFLTR-EDNPQLQLEAARALTNIASE 429 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~------~~~----~~~i~~~g~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~ 429 (767)
.|.++.....+.+.+-.+|+...+.++ .++ ....+.. ......+.++. +.+.++++.|..+++.+...
T Consensus 522 s~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~-m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~ 600 (1233)
T KOG1824|consen 522 SPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKT-MYDCTLQRLKATDSDQEVKERAISCMGQIIAN 600 (1233)
T ss_pred hhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHH-HHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 556666777888888888988888877 221 1111111 12223333333 33589999999999988871
Q ss_pred hhHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHh
Q 004225 430 NTNVVI--DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSR 507 (767)
Q Consensus 430 ~~~~~~--~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 507 (767)
..+..- -...++.+++-| .++-.|..|+.+++.++...-.....-.-..+++.+...+ .-.....+...+.++-.
T Consensus 601 fgD~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~fl-rK~~r~lr~~~l~a~~~ 677 (1233)
T KOG1824|consen 601 FGDFLGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFL-RKNQRALRLATLTALDK 677 (1233)
T ss_pred HhhhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 111111 112333444333 5667888999999999965433321122223667777777 33334455555555555
Q ss_pred hcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchH
Q 004225 508 FCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPP 586 (767)
Q Consensus 508 l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a 586 (767)
+...- ........+.++.-+..++..+|..+...++.++..++...+...- -....+++.++.+++++- ++..|
T Consensus 678 L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~-~~~~~iL~~ii~ll~Spl----lqg~a 752 (1233)
T KOG1824|consen 678 LVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLL-KISNPILDEIIRLLRSPL----LQGGA 752 (1233)
T ss_pred HHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHH-HHhhhhHHHHHHHhhCcc----ccchH
Confidence 54433 2334445566777777888889999999999999999887764443 334578899999998873 34445
Q ss_pred HHHHhhhh----ccCCcceeeh----------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--
Q 004225 587 LWTVRYIV----KGDGFLTQCT----------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA-- 644 (767)
Q Consensus 587 ~~~L~~l~----~~~~~~~~~l----------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-- 644 (767)
+.++-.+. ........+. .+.+.|.+.+..+++.-....+ -....+...++.-++++
T Consensus 753 l~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~-~~s~s~a~kl~~~~~s~~s 831 (1233)
T KOG1824|consen 753 LSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP-QKSKSLATKLIQDLQSPKS 831 (1233)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHhCCCC
Confidence 44433332 1111111111 3556666665555441100000 00112344555555533
Q ss_pred CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 645 EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 645 ~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
+..+|.-|...++.+..+..... +.+....+++.+.+++.+++.+|..||+++..
T Consensus 832 ~~~ikvfa~LslGElgr~~~~s~-----~~e~~~~iieaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDLSP-----QNELKDTIIEAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCCCc-----chhhHHHHHHHcCCChHHHHHHHHHHhhhhhc
Confidence 45677778888888776643222 23455578888899999999999999999876
No 118
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.9e-05 Score=80.80 Aligned_cols=58 Identities=22% Similarity=0.147 Sum_probs=36.8
Q ss_pred cCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 61 IVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 61 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
+..++++++|++++| .++.+|.. .++|++|.+.+|..++... ..+ .++|++|++.+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~L------P~sLtsL~Lsnc~nLtsLP-~~L----P~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVL------PNELTEITIENCNNLTTLP-GSI----PEGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCC------CCCCcEEEccCCCCcccCC-chh----hhhhhheEccCcc
Confidence 334577888888888 67766621 2468888888887775432 111 2467777777664
No 119
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=5.7e-07 Score=85.04 Aligned_cols=182 Identities=17% Similarity=0.122 Sum_probs=121.6
Q ss_pred CCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCCCCc----ccccCCceeeeeecccccchhhc
Q 004225 119 PNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSASLPY----EKVENGMWVEIREAFHLEHILIR 194 (767)
Q Consensus 119 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~i~~~~~l~~~~~~ 194 (767)
+.|+.|+++.... +...+-..+..+.+|+.|+++|.....+. .+=++|+.++++.|+++......
T Consensus 185 sRlq~lDLS~s~i-----------t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVI-----------TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhhHHhhcchhhe-----------eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH
Confidence 4588888876532 11344456888899999999998764443 33468899999999988765332
Q ss_pred c-ccccccccEEEecCCCccccccCC--CCcCCCCCEEEeccCccchhhc-CchhhhccccCcEEeEccccccchhcccc
Q 004225 195 E-SSVTNNLVILRVKGCDHLVNLVPP--STSFQNLTNMVVSRCNNLKIVL-TSLIAKTLVRLRYMKIKSCDRITEIVQGD 270 (767)
Q Consensus 195 ~-~~~~~~L~~L~i~~~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 270 (767)
- ...++.|.+|+++.|........- ..--++|+.|+|+||++--... ..-+...+|+|.+|++++|..++.-...+
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence 2 234788999999988765433111 1224789999999987632221 12335678999999999998776543322
Q ss_pred ccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 271 DVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 271 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
.. .|+.|+.|.++.|..+---..- .....|+|.+|++.+|-
T Consensus 334 ~~-------kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 FF-------KFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HH-------hcchheeeehhhhcCCChHHee-eeccCcceEEEEecccc
Confidence 22 1889999999998766321110 12367999999999984
No 120
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.0002 Score=79.02 Aligned_cols=234 Identities=16% Similarity=0.197 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHh--hh-hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHcc-
Q 004225 416 QLEAARALTNIAS--EN-TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK- 491 (767)
Q Consensus 416 ~~~a~~~L~~l~~--~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~- 491 (767)
|..|+..|+.... .+ ......-|+.|+.+++|+++-.+++---+.+...|-..++.+...+++.++-..+++.+..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 5566666766666 33 3344567999999999999999999888888888887778777777787777788888843
Q ss_pred -CCChHHHHHHHHHHHhhcCCCCCC-CccchhchHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHH
Q 004225 492 -HAKPSMLRNATKTLSRFCQGKPEP-PFDQVRPALPALAQLVHSN-DNDVLRYACEALSCLSDGTNDKIQAVIEADVCPR 568 (767)
Q Consensus 492 -~~~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 568 (767)
.-+++-+..|+.+|+.+..+.+.- ......+.+...+..+.++ .+-.+..++-+|+.|-++.++..-.-++.++.+.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 124577888999999999886332 3444566777777888875 6778999999999999877665554556689999
Q ss_pred HHHHhcCCCCCCcccchHHHHHhhhhccCC----cceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCH---HHHHHHH
Q 004225 569 LVKLLLHPLPFPFGLTPPLWTVRYIVKGDG----FLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVI---GPLVDLL 641 (767)
Q Consensus 569 L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~----~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i---~~L~~ll 641 (767)
|+.+|.++.+ +|+.+|+.+|+.+..+.. ++.. +..+-+. + +..+..++..+. ..+..++
T Consensus 647 L~~~LsD~vp--EVRaAAVFALgtfl~~~~d~fde~~~---~~~~~~~----l-----~~~~~~~E~~i~~~~~~ll~~v 712 (1387)
T KOG1517|consen 647 LILLLSDPVP--EVRAAAVFALGTFLSNGSDNFDEQTL---VVEEEID----L-----DDERTSIEDLIIKGLMSLLALV 712 (1387)
T ss_pred HHHHhcCccH--HHHHHHHHHHHHHhcccccccchhhh---hhhhhhc----c-----hhhhhhHHHHHHhhHHHHHHHH
Confidence 9999999999 999999999888876532 1111 1100000 0 000111222222 4677778
Q ss_pred hcCCchhHHHHHHHHHHhhcCC
Q 004225 642 QNAEFFTKKEAARAISNAISGG 663 (767)
Q Consensus 642 ~~~~~~v~~~a~~~L~nl~~~~ 663 (767)
+.+++-++.+.+.+|.+++.+.
T Consensus 713 sdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 713 SDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hccchHHHHHHHHHHHHHHHhh
Confidence 8899999999999999998863
No 121
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.95 E-value=1.4e-05 Score=53.31 Aligned_cols=41 Identities=37% Similarity=0.502 Sum_probs=38.0
Q ss_pred CHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhc
Q 004225 621 NREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 621 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~ 661 (767)
+++.++.+++.|++|.|++++++.+++++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999873
No 122
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.95 E-value=0.0033 Score=65.57 Aligned_cols=184 Identities=29% Similarity=0.339 Sum_probs=143.2
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
.++.+.+.+.+.++.++..|+..++.+. ....++.+.+++.+.+ +.++..|+.+|+.+-. ...
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDED-PRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--------hhH
Confidence 6888889999999999999999977633 2335789999999999 8999999998887742 346
Q ss_pred hHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCC------------hHHHHHHHHHHH
Q 004225 440 VPIFVKLLS-SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAK------------PSMLRNATKTLS 506 (767)
Q Consensus 440 l~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~------------~~~~~~~~~~L~ 506 (767)
++.++.++. +.+..+|..|+++|+.+-... ++..++..+ .+.. ..++..+..+++
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l-~~~~~~~a~~~~~~~~~~~r~~a~~~l~ 174 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEAL-QDEDSGSAAAALDAALLDVRAAAAEALG 174 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHh-ccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 889999998 599999999999999887431 367777777 3333 246777777777
Q ss_pred hhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchH
Q 004225 507 RFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPP 586 (767)
Q Consensus 507 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a 586 (767)
.+-.. ..++.+...+.+.+..++..+..++..+.... ..+.+.+.+.+.+.+. .++..+
T Consensus 175 ~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~--~vr~~~ 233 (335)
T COG1413 175 ELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESL--EVRKAA 233 (335)
T ss_pred HcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCH--HHHHHH
Confidence 66655 37788999999999999999999999988765 2356778889999998 666666
Q ss_pred HHHHhhh
Q 004225 587 LWTVRYI 593 (767)
Q Consensus 587 ~~~L~~l 593 (767)
+..++.+
T Consensus 234 ~~~l~~~ 240 (335)
T COG1413 234 LLALGEI 240 (335)
T ss_pred HHHhccc
Confidence 6666655
No 123
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=0.0014 Score=73.02 Aligned_cols=362 Identities=12% Similarity=0.074 Sum_probs=236.2
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHH
Q 004225 365 LAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIF 443 (767)
Q Consensus 365 ~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L 443 (767)
-+.-+..++.++..++..+..++..........++++.+.++..++. ..++..|...+.++.. -....-......+.+
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l 321 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDDDVVKSLTESL 321 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCchhhhhhhhHHH
Confidence 34445778889999999999998433447778899999999999988 7999999999999988 222112234567889
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC--CCCCccchh
Q 004225 444 VKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK--PEPPFDQVR 521 (767)
Q Consensus 444 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--~~~~~~~~~ 521 (767)
++..++.+..++...+.....+...-.. ......-+++....+ .+...+.+..++.-...++... +....+..+
T Consensus 322 ~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~ 397 (759)
T KOG0211|consen 322 VQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDS 397 (759)
T ss_pred HHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcccccccchh
Confidence 9999999999998888887777743221 122233567777788 6777777777777666666554 233455566
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcce
Q 004225 522 PALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLT 601 (767)
Q Consensus 522 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 601 (767)
.++|.+..+..+.+..++.+.+.....+....+.. +.+ ....|.....+++..+ .++.+..+.+..+-...+...
T Consensus 398 ~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~-~ti--~~llp~~~~~l~de~~--~V~lnli~~ls~~~~v~~v~g 472 (759)
T KOG0211|consen 398 SILPEVQVLVLDNALHVRSALASVITGLSPILPKE-RTI--SELLPLLIGNLKDEDP--IVRLNLIDKLSLLEEVNDVIG 472 (759)
T ss_pred hhhHHHHHHHhcccchHHHHHhccccccCccCCcC-cCc--cccChhhhhhcchhhH--HHHHhhHHHHHHHHhccCccc
Confidence 67899999999999999998888777775443210 101 2456777777777777 777777765544432222111
Q ss_pred eeh------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCC
Q 004225 602 QCT------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGG 663 (767)
Q Consensus 602 ~~l------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~ 663 (767)
... .++.+..+.+-.++.... ..+++...-+.+...+.+....++..|+..+..++...
T Consensus 473 ~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~ 549 (759)
T KOG0211|consen 473 ISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETF 549 (759)
T ss_pred chhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHh
Confidence 100 344444444444333111 12233333344444555566788999998888887632
Q ss_pred CHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCC
Q 004225 664 THEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDS 743 (767)
Q Consensus 664 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~ 743 (767)
. ..+-.+ ..++.+..+..+++...|...+.++.-++...+. +.+++.| ++-+.++..++.
T Consensus 550 G---~~w~~~-~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~-----------ei~~~~L-----lp~~~~l~~D~v 609 (759)
T KOG0211|consen 550 G---SEWARL-EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ-----------EITCEDL-----LPVFLDLVKDPV 609 (759)
T ss_pred C---cchhHH-HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc-----------HHHHHHH-----hHHHHHhccCCc
Confidence 2 112112 2455555566566778888888888877765432 2234444 788888999999
Q ss_pred hHHHHHHHHHHHHhcC
Q 004225 744 NGICEKAVKILEIYWS 759 (767)
Q Consensus 744 ~~v~~~a~~~l~~~~~ 759 (767)
++||-.+...+..+-.
T Consensus 610 anVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 610 ANVRINVAKHLPKILK 625 (759)
T ss_pred hhhhhhHHHHHHHHHh
Confidence 9999999988887644
No 124
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.93 E-value=0.026 Score=60.42 Aligned_cols=331 Identities=15% Similarity=0.153 Sum_probs=197.8
Q ss_pred HHHHHhhhcCCCH---HHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---h-h--
Q 004225 361 LPGMLAGVWSDDS---GLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---E-N-- 430 (767)
Q Consensus 361 i~~l~~~l~s~~~---~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~-~-- 430 (767)
+|.++..|.+++. ......+.+|..++ ++..-..+..+++..+-...+.+.+.+.-..++.++..+.. + .
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 4677777776555 55667888888888 55544444446677777666655446777788888888877 1 1
Q ss_pred --hHHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc----------c
Q 004225 431 --TNVVIDGGAVPIFVKLLSS-----P--SDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN----------K 491 (767)
Q Consensus 431 --~~~~~~~~~l~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----------~ 491 (767)
.....+..++|.+.+.... . ++.+...+..+++.+...-+...+.- .+..+..++. .
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~~~ 156 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQPS 156 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCCcc
Confidence 1223344577888776532 1 24555666666666664444332221 2344444441 0
Q ss_pred C-----CChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccC--ChhHHHHHHhc
Q 004225 492 H-----AKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDG--TNDKIQAVIEA 563 (767)
Q Consensus 492 ~-----~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~ 563 (767)
. .......-...+++.+- +..........+..++.+.. ..++..+..++.+++.+... .++....
T Consensus 157 ~~~~~~~~~~~~~l~~~il~~l~---~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~---- 229 (415)
T PF12460_consen 157 SSTISEQQSRLVILFSAILCSLR---KDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE---- 229 (415)
T ss_pred ccccccccccHHHHHHHHHHcCC---cccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH----
Confidence 0 11112222223333333 33333344457777777765 44588888888888887744 2222222
Q ss_pred CcHHHHHHHh-cCCCCCCcccchHHHHHhhhh-----ccCCcceeeh----------hhhHHHHHHHhhhccCCHH----
Q 004225 564 DVCPRLVKLL-LHPLPFPFGLTPPLWTVRYIV-----KGDGFLTQCT----------GIAKEACRTISNITAGNRE---- 623 (767)
Q Consensus 564 ~~~~~L~~lL-~~~~~~~~v~~~a~~~L~~l~-----~~~~~~~~~l----------~v~~~a~~~l~nl~~~~~~---- 623 (767)
++..+.... ...+. ..+..++.++.+++ .+++...+.+ ++...|+..++-+....++
T Consensus 230 -~l~~~~~~~~~~~~~--~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~ 306 (415)
T PF12460_consen 230 -FLDSLLQSISSSEDS--ELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNK 306 (415)
T ss_pred -HHHHHHhhhcccCCc--chhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCc
Confidence 333343333 33333 66667777776665 3343332222 5667777777777765332
Q ss_pred ----HHHHHHHcC----CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHH
Q 004225 624 ----QIQVVIDAG----VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTIC 695 (767)
Q Consensus 624 ----~~~~~~~~~----~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 695 (767)
.++.+.+.. ++|.+++-.+..+...|..-..||+++..+. |..+-.-.-..+++.|++-+..+|++++..+
T Consensus 307 ~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~v-P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~ 385 (415)
T PF12460_consen 307 ENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNV-PKSVLLPELPTLLPLLLQSLSLPDADVLLSS 385 (415)
T ss_pred cccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 233333333 4677777777777778999999999999874 4433222224589999999999999999999
Q ss_pred HHHHHHHHHhh
Q 004225 696 LKGLENILKVG 706 (767)
Q Consensus 696 l~aL~~l~~~~ 706 (767)
+.+|..++...
T Consensus 386 L~tL~~~l~~~ 396 (415)
T PF12460_consen 386 LETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHcC
Confidence 99999999865
No 125
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.91 E-value=1.9e-05 Score=65.42 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=107.5
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 440 VPIFVKLL-SSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 440 l~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
+..|+.-. ...+.+.+++...-|.|++.+ |.+-..+.+.++++.++.-+ ..++..+.+.+++.|+|+|-+..+.+.+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl-~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSL-EEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHh-hcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 34444433 347899999999999999977 55556788899999999999 8999999999999999999998888999
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHH
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKL 572 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 572 (767)
...+++|.++..+.+....+...++.++..++.+.......+....++..+...
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 999999999999999999999999999999998876666655544444444433
No 126
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4.5e-06 Score=83.50 Aligned_cols=138 Identities=12% Similarity=0.159 Sum_probs=68.9
Q ss_pred cCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCC
Q 004225 89 LEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSAS 168 (767)
Q Consensus 89 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (767)
.++.+|+++.+.+|+--........ ..+++++.|+++.+-. ....++....+.+++|+.|.++.....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~--k~~~~v~~LdLS~NL~----------~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYS--KILPNVRDLDLSRNLF----------HNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhHHhhhheeecCccccccchhhhh--hhCCcceeecchhhhH----------HhHHHHHHHHHhcccchhccccccccc
Confidence 3567788888877763222111111 3678888888876531 112344556677778888877765543
Q ss_pred CCcccccCCceeeeeecccccchhhccccccccccEEEecCCCcc-ccccCCCCcCCCCCEEEeccCccch-hhcCchhh
Q 004225 169 LPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHL-VNLVPPSTSFQNLTNMVVSRCNNLK-IVLTSLIA 246 (767)
Q Consensus 169 ~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~ 246 (767)
.+.... . ...+++|+.|.+++|... .++......||+|..|.+.....+. ...+ .
T Consensus 186 ~~~~s~-------------~-------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~ 242 (505)
T KOG3207|consen 186 NFISSN-------------T-------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---T 242 (505)
T ss_pred CCcccc-------------c-------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---h
Confidence 332110 0 012355666666665432 1111123456666666665543111 1111 1
Q ss_pred hccccCcEEeEcccc
Q 004225 247 KTLVRLRYMKIKSCD 261 (767)
Q Consensus 247 ~~l~~L~~L~i~~c~ 261 (767)
.-+..|++|++++.+
T Consensus 243 ~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 243 KILQTLQELDLSNNN 257 (505)
T ss_pred hhhhHHhhccccCCc
Confidence 224456666666544
No 127
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.012 Score=66.19 Aligned_cols=290 Identities=16% Similarity=0.121 Sum_probs=159.8
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hh--hHHHHh
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-EN--TNVVID 436 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~--~~~~~~ 436 (767)
.+..+.+.+++.|..++-.|++-++++++....... ..++...++++..-+++..=..|+-+|+.++. .. ...+
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l-- 418 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL-- 418 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH--
Confidence 366778888899999999999999999932222222 23455556655443335566688999999988 11 1111
Q ss_pred CCChHHHHHhhCC--------CCHHHHHHHHHHHHHHhcCCchh-HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHh
Q 004225 437 GGAVPIFVKLLSS--------PSDDVREKAVWALGNIARSSPRD-RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSR 507 (767)
Q Consensus 437 ~~~l~~L~~lL~~--------~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 507 (767)
..++|.++..|.- ....||..|+.+.+.++...... .+-+.+.=+--.++..+ -+.+...|++|..|+-.
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al-FDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL-FDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh-cCchhhHhHHHHHHHHH
Confidence 2467777777653 34579999999999888543321 11111111111222333 56778889999888865
Q ss_pred hcCC-CCCC---Cccc-----------------------hhchHHHHH-HH----hcCCCHHHHHHHHHHHHhhccCChh
Q 004225 508 FCQG-KPEP---PFDQ-----------------------VRPALPALA-QL----VHSNDNDVLRYACEALSCLSDGTND 555 (767)
Q Consensus 508 l~~~-~~~~---~~~~-----------------------~~~~i~~L~-~l----l~~~~~~v~~~a~~~L~~l~~~~~~ 555 (767)
.... ...+ ..+. ..+....++ .+ +.+=|..+++.+.++|.+++...++
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk 577 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK 577 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH
Confidence 5433 2111 0000 012122222 22 2355899999999999999877654
Q ss_pred HHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcce---eeh--------------------------hh
Q 004225 556 KIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLT---QCT--------------------------GI 606 (767)
Q Consensus 556 ~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~---~~l--------------------------~v 606 (767)
... ...++.++......+. ..+.-+.-+.+.++.+..... ..+ -+
T Consensus 578 ~~a----~~~L~~lld~~ls~~~--~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lm 651 (1133)
T KOG1943|consen 578 YLA----DYVLPPLLDSTLSKDA--SMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLM 651 (1133)
T ss_pred hhc----ccchhhhhhhhcCCCh--HHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHH
Confidence 432 2466666666666665 544444444444432111110 000 22
Q ss_pred hHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhh
Q 004225 607 AKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAI 660 (767)
Q Consensus 607 ~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~ 660 (767)
+...+..+-++........+..+..+.-..+.+.+...+ .+|..|.++++.++
T Consensus 652 r~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~ 704 (1133)
T KOG1943|consen 652 RQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLV 704 (1133)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHH
Confidence 333444555555544443333333333344444443334 66777777777665
No 128
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.86 E-value=0.004 Score=64.90 Aligned_cols=188 Identities=27% Similarity=0.382 Sum_probs=136.7
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVL 477 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 477 (767)
..++.+++.+.+++ ..++..|++.++.+.. .-+++.+..++.+.++.+|..|+.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~--------- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGDP--------- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---------
Confidence 46788899999987 8999999999777653 34688999999999999999999988876531
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCH------------HHHHHHHHH
Q 004225 478 SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDN------------DVLRYACEA 545 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------~v~~~a~~~ 545 (767)
..++.++..+..+++..++..+.++|..+-... .+..++..+++... .++..+...
T Consensus 105 --~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 105 --EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred --hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 267889999944799999999999999988663 46777777776552 244444444
Q ss_pred HHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHH
Q 004225 546 LSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQI 625 (767)
Q Consensus 546 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~ 625 (767)
+..+-. ...++.+...+.+.+. .++..|..+++.+....
T Consensus 173 l~~~~~-----------~~~~~~l~~~l~~~~~--------------------------~vr~~Aa~aL~~~~~~~---- 211 (335)
T COG1413 173 LGELGD-----------PEAIPLLIELLEDEDA--------------------------DVRRAAASALGQLGSEN---- 211 (335)
T ss_pred HHHcCC-----------hhhhHHHHHHHhCchH--------------------------HHHHHHHHHHHHhhcch----
Confidence 444322 2356778888888887 45555555555544432
Q ss_pred HHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhc
Q 004225 626 QVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 626 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~ 661 (767)
..+.+.+...+...+..++..++.+++.+-.
T Consensus 212 -----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 212 -----VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred -----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 2345667777778888888888877777654
No 129
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.0041 Score=68.79 Aligned_cols=139 Identities=19% Similarity=0.257 Sum_probs=113.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
+|.+++...+.|.+++.----++...+ ..+...+. .++.+.+-+++++ +.+|-.|+++++.+-. ..+. ..+
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~---~el~-~~~ 128 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV---KELL-GNI 128 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh---HHHH-HHH
Confidence 777788888899999998888898888 44444444 3788899999999 9999999999887743 2222 246
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCC
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 511 (767)
++.+.++++++++.||..|+.++.++-.-+++ .+.+.|.+..+..++ .+.++.+..+|+.++..+...
T Consensus 129 ~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 129 IDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 78999999999999999999999999976553 466778888888888 899999999999999988766
No 130
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.85 E-value=0.00064 Score=65.25 Aligned_cols=259 Identities=15% Similarity=0.129 Sum_probs=163.1
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHh--hhhHHHH-hCCChHHHHHhhCC--CCHHHHHHHHHHHHHHhcCCchhHHHHHh-
Q 004225 405 EFLTREDNPQLQLEAARALTNIAS--ENTNVVI-DGGAVPIFVKLLSS--PSDDVREKAVWALGNIARSSPRDRDLVLS- 478 (767)
Q Consensus 405 ~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~-~~~~l~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~- 478 (767)
++++.-+ +-.+.-|.+++.+++. +.|...- +...-..++..+++ ++..+|++.+.+++-++.. +++.+.+-.
T Consensus 156 kl~Q~i~-~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~ 233 (432)
T COG5231 156 KLSQLID-FLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKM 233 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 3444444 6678889999999998 6666543 44455678888877 6789999999999998865 445432211
Q ss_pred cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC--Cccchhc-hHHHHHHHhc--CCCHHHHHHHHHHHHhhccCC
Q 004225 479 EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP--PFDQVRP-ALPALAQLVH--SNDNDVLRYACEALSCLSDGT 553 (767)
Q Consensus 479 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~--~~~~~~~-~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~ 553 (767)
...+.-++++++......+.+.|+..+.|++...|.. ......+ +.+..-.+.. -.|++++.+.-++=..+....
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 1356677777766667889999999999999854322 2222223 4443333333 245667666554444443322
Q ss_pred hhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHH--c
Q 004225 554 NDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVID--A 631 (767)
Q Consensus 554 ~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~--~ 631 (767)
.... ..+ ..+.-+-.-+-+-++ . .+.+..| .+..+.+.+ .
T Consensus 314 k~l~--~fD-~Y~~ELdsg~l~wSp--~------------------------H~~~dFW---------s~N~d~l~kdny 355 (432)
T COG5231 314 KKLC--IFD-NYLNELDSGRLEWSP--Y------------------------HHKKDFW---------STNLDMLIKDNY 355 (432)
T ss_pred hhhh--HHH-HHHHHHhhCcccCCC--c------------------------ccccCch---------hhhHHHHhhhhH
Confidence 1110 001 011111111111111 0 0111111 122333332 2
Q ss_pred CCHHHHHHHHhcCCch-hHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 632 GVIGPLVDLLQNAEFF-TKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 632 ~~i~~L~~ll~~~~~~-v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
.++..|..+++..++. ....||.-+..++.. .|+...-+...|+-+.++++++++|++|+-.|+.|+..++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~-~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRA-SPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh-CchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 4688899999988776 566678888888886 78888888889999999999999999999999999998875
No 131
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.81 E-value=1.4e-06 Score=96.47 Aligned_cols=35 Identities=26% Similarity=0.173 Sum_probs=16.1
Q ss_pred EeecCCCCcccccCCCccccCCccceEeecCCCCcc
Q 004225 287 LKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMK 322 (767)
Q Consensus 287 L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~ 322 (767)
+.+.+|+.++ .........++.++.|.+..|...+
T Consensus 381 ~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 381 LSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred HHhcCCcccc-hHHHHHhccCCccceEecccCcccc
Confidence 4445566552 2211112233336666666665544
No 132
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.80 E-value=3.2e-06 Score=92.37 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=76.3
Q ss_pred cCCceeeeeecccccchhhccccccccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccchhhcCchhhhccccCc
Q 004225 175 ENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLR 253 (767)
Q Consensus 175 ~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 253 (767)
+.|+.|++.+.. +..-.++......+|+.|++++- .+..++.. ...++.|+.|++++. +++.++... .+++.|+
T Consensus 359 ~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tv--a~~~~L~ 433 (1081)
T KOG0618|consen 359 AALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTV--ANLGRLH 433 (1081)
T ss_pred HHHHHHHHhcCc-ccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHH--HhhhhhH
Confidence 344555555443 22222333445678888888663 33332221 356777888888885 577776443 3577777
Q ss_pred EEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCC
Q 004225 254 YMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPD 320 (767)
Q Consensus 254 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 320 (767)
+|...+ +.+..+| +... ++.|+.++++ |.+|+..-.... ...|+|++|++.|.+.
T Consensus 434 tL~ahs-N~l~~fP-e~~~--------l~qL~~lDlS-~N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 434 TLRAHS-NQLLSFP-ELAQ--------LPQLKVLDLS-CNNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhcC-Cceeech-hhhh--------cCcceEEecc-cchhhhhhhhhh-CCCcccceeeccCCcc
Confidence 777654 3366666 3333 6788888886 666666654322 2337888888888764
No 133
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.016 Score=61.88 Aligned_cols=303 Identities=17% Similarity=0.121 Sum_probs=174.5
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHH
Q 004225 364 MLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPI 442 (767)
Q Consensus 364 l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~ 442 (767)
.+++|+++-...+.-..-.+.-+.+.+.+.+- -++..+.+-|.+.+ +.....|..+++|+-. +..+.+... ++
T Consensus 79 aV~LLss~kysEKqIGYl~is~L~n~n~dl~k--lvin~iknDL~srn-~~fv~LAL~~I~niG~re~~ea~~~D--I~- 152 (938)
T KOG1077|consen 79 AVNLLSSNKYSEKQIGYLFISLLLNENSDLMK--LVINSIKNDLSSRN-PTFVCLALHCIANIGSREMAEAFADD--IP- 152 (938)
T ss_pred HHHHhhcCCccHHHHhHHHHHHHHhcchHHHH--HHHHHHHhhhhcCC-cHHHHHHHHHHHhhccHhHHHHhhhh--hH-
Confidence 34555554444444333333333333332221 13455666666777 7889999999999988 776665532 33
Q ss_pred HHHhhCCC--CHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccch
Q 004225 443 FVKLLSSP--SDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQV 520 (767)
Q Consensus 443 L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 520 (767)
++|.++ .+-++..|+-++-.+...+|+.. -..+-.+.++.+| .+.+-.+.-++...+.-++...+..-....
T Consensus 153 --KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~ 226 (938)
T KOG1077|consen 153 --KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCL 226 (938)
T ss_pred --HHHhCCcchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhH
Confidence 556553 36688889999999988777532 2234688899999 666666766777777777766544333333
Q ss_pred hchHHHHHHHhcC-------------CCHHHHHHHHHHHHhhccCChh-HHHHHHhcCcHHHHHHHhcCCCCCCcccc-h
Q 004225 521 RPALPALAQLVHS-------------NDNDVLRYACEALSCLSDGTND-KIQAVIEADVCPRLVKLLLHPLPFPFGLT-P 585 (767)
Q Consensus 521 ~~~i~~L~~ll~~-------------~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~~v~~-~ 585 (767)
..++..|.+.... +.+-....++++|.+.-...+. ...... .+.+.++...+.......++. +
T Consensus 227 ~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~n 304 (938)
T KOG1077|consen 227 PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSN 304 (938)
T ss_pred HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhh
Confidence 3344444443321 2366777788877776432222 111111 233333333332111001111 1
Q ss_pred HHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCH
Q 004225 586 PLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTH 665 (767)
Q Consensus 586 a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 665 (767)
|-. .+.-+|+..+..+- ..++... ..+..|.+++.+.+..+|.-|...++.++...
T Consensus 305 a~n----------------aVLFeaI~l~~h~D-~e~~ll~-----~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~-- 360 (938)
T KOG1077|consen 305 AKN----------------AVLFEAISLAIHLD-SEPELLS-----RAVNQLGQFLSHRETNIRYLALESMCKLASSE-- 360 (938)
T ss_pred hHH----------------HHHHHHHHHHHHcC-CcHHHHH-----HHHHHHHHHhhcccccchhhhHHHHHHHHhcc--
Confidence 111 12222222222211 1222221 25778889999999999999999999998752
Q ss_pred HHHHHHHHcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhh
Q 004225 666 EQIKYLVRKGCIKPLCDLLL-YADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 666 ~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~ 706 (767)
.....+-.. .+.++..++ +.|..+|+.|+..|+.++...
T Consensus 361 ~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 361 FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 222222222 667777888 789999999999999999643
No 134
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0079 Score=62.61 Aligned_cols=232 Identities=13% Similarity=0.130 Sum_probs=157.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHH--hcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhH-HHH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVI--QSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTN-VVI 435 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~-~~~ 435 (767)
+|-+-+.+..-++..+.--+.-+..+-+.+.-.++ -..+.+-|+.+|.++. ++++..+-.++.+... .... .+-
T Consensus 169 ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~fL~eI~s~P~s~d 247 (675)
T KOG0212|consen 169 IPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEFLAEIRSSPSSMD 247 (675)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHhcCccccC
Confidence 66666677777888888888888877744433444 2467888899999999 8999888888888777 2222 222
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCCh-HHHHHHHH---HHHhhcCC
Q 004225 436 DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKP-SMLRNATK---TLSRFCQG 511 (767)
Q Consensus 436 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-~~~~~~~~---~L~~l~~~ 511 (767)
-...++.++.-+.++++.++..|+.-+..+..-.+.. -...-.|++..++..+ .+.++ ..++.+.. .+..+...
T Consensus 248 ~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~-s~~e~~~i~~~a~~~n~~l~~l~s~ 325 (675)
T KOG0212|consen 248 YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCL-SDTEEMSIKEYAQMVNGLLLKLVSS 325 (675)
T ss_pred cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCC-CCCccccHHHHHHHHHHHHHHHHhh
Confidence 3457889999999999999999987777777443322 1223456677777777 44333 23333322 23333333
Q ss_pred CCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHh
Q 004225 512 KPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVR 591 (767)
Q Consensus 512 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~ 591 (767)
......+....++..+...+.++..+.+..++.-+..+-...+...- .....+.+.+++-|.+.+. ++...++..++
T Consensus 326 ~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd--~vvl~~L~lla 402 (675)
T KOG0212|consen 326 ERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSD--EVVLLALSLLA 402 (675)
T ss_pred hhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchh--HHHHHHHHHHH
Confidence 22222245567888999999999999999999888777765554443 2334789999999999998 77777777777
Q ss_pred hhhccCC
Q 004225 592 YIVKGDG 598 (767)
Q Consensus 592 ~l~~~~~ 598 (767)
+++.+..
T Consensus 403 ~i~~s~~ 409 (675)
T KOG0212|consen 403 SICSSSN 409 (675)
T ss_pred HHhcCcc
Confidence 7765443
No 135
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.76 E-value=6.6e-05 Score=50.09 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=37.6
Q ss_pred CHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 004225 664 THEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENIL 703 (767)
Q Consensus 664 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~ 703 (767)
+++.++.+++.|+++.|+++++++++++++.|+|+|.|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999999999986
No 136
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.75 E-value=0.00039 Score=57.82 Aligned_cols=138 Identities=9% Similarity=0.008 Sum_probs=113.0
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhh
Q 004225 605 GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLL 684 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll 684 (767)
+.++.....+.|.+.. |.....+.+.++++.++..+...+..++..+...|+|++.+ +.....+.++++++.++..+
T Consensus 32 eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d--~~n~~~I~ea~g~plii~~l 108 (173)
T KOG4646|consen 32 EAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD--KTNAKFIREALGLPLIIFVL 108 (173)
T ss_pred HHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC--hHHHHHHHHhcCCceEEeec
Confidence 5666677777777775 45566788889999999999999999999999999999984 78888899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 004225 685 LYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYW 758 (767)
Q Consensus 685 ~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 758 (767)
.++...+...|+.++.-+...+.. .+..+-.--.++.+++.-.+.+.+.+..|...++.+.
T Consensus 109 ssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 109 SSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred CCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 999999999999999988765433 2344445556777888888888888888888887664
No 137
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.74 E-value=1.9e-06 Score=74.65 Aligned_cols=130 Identities=17% Similarity=0.204 Sum_probs=91.6
Q ss_pred cccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccc-cchhccccccccc
Q 004225 197 SVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDR-ITEIVQGDDVVAK 275 (767)
Q Consensus 197 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~-l~~~~~~~~~~~~ 275 (767)
..+.+|+.|++++ +.++.++..+.++|+|+.|++. ..++..++.- ++++|.||.|++...+- -..+|.....
T Consensus 53 a~l~nlevln~~n-nqie~lp~~issl~klr~lnvg-mnrl~~lprg--fgs~p~levldltynnl~e~~lpgnff~--- 125 (264)
T KOG0617|consen 53 AELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVG-MNRLNILPRG--FGSFPALEVLDLTYNNLNENSLPGNFFY--- 125 (264)
T ss_pred HHhhhhhhhhccc-chhhhcChhhhhchhhhheecc-hhhhhcCccc--cCCCchhhhhhccccccccccCCcchhH---
Confidence 3457888888866 4567777788889999999884 5566666543 57789999999876542 2334444433
Q ss_pred cccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhcccc
Q 004225 276 DEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 276 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~~ 342 (767)
+..|+-|++.+ ...+.++.. ...+++|+.|.+++. ++-.+|...-...+|+++.|.|.
T Consensus 126 -----m~tlralyl~d-ndfe~lp~d--vg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 126 -----MTTLRALYLGD-NDFEILPPD--VGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred -----HHHHHHHHhcC-CCcccCChh--hhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc
Confidence 67888888876 356666643 457888888888887 45567877666678888888874
No 138
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.002 Score=71.32 Aligned_cols=307 Identities=13% Similarity=0.105 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHhhhh-------HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHH
Q 004225 416 QLEAARALTNIASENT-------NVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLA 487 (767)
Q Consensus 416 ~~~a~~~L~~l~~~~~-------~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ 487 (767)
...+..+|.|+...+. ....--|..+.+..++.. .++.++.-|+.++.-+... .++...+...|.+..|+.
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHHH
Confidence 3457888999888221 111223677888888876 7888999999988777754 567777888899999999
Q ss_pred HHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCCh------------
Q 004225 488 QLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTN------------ 554 (767)
Q Consensus 488 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~------------ 554 (767)
++ +.-+..|+-++.+|..++............|++..+..++- .+....+.+++..++.+....-
T Consensus 1821 lL--HS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1821 LL--HSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HH--hcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 98 56688999999999999988755555666777777776665 5668899999999999875521
Q ss_pred --hHHHHHHhcCcHHHHHHHhcCCCCCCcccc------hHHHHHhhhhc------cCCcce------eeh----------
Q 004225 555 --DKIQAVIEADVCPRLVKLLLHPLPFPFGLT------PPLWTVRYIVK------GDGFLT------QCT---------- 604 (767)
Q Consensus 555 --~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~------~a~~~L~~l~~------~~~~~~------~~l---------- 604 (767)
+.....++ +..+..+..+....+..++.. ..-..+..+.. ..+... +..
T Consensus 1899 LP~~f~d~~R-D~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1899 LPEIFADSLR-DSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred chHHHHHHHh-cCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 11111222 234667777765433223322 22223333321 000000 000
Q ss_pred ------------------------------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh
Q 004225 605 ------------------------------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ 642 (767)
Q Consensus 605 ------------------------------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~ 642 (767)
....-.-.++..+...-+...+.+-..|.+|.++..+.
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence 00011111222223333444444445688999999998
Q ss_pred cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHH
Q 004225 643 NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHY 722 (767)
Q Consensus 643 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~ 722 (767)
..+..+-..|..+|..++. +.-.++.|.+...+..++..++- .+...--|+.+|.+++...... +
T Consensus 2058 ~~n~s~P~SaiRVlH~Lse--n~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~e------------L 2122 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSE--NQFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGE------------L 2122 (2235)
T ss_pred hcCCcCcHHHHHHHHHHhh--ccHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHH------------H
Confidence 8877777888999999887 46777788887777777776653 3344557999999999854332 3
Q ss_pred HHHHHhhchHHHHHHHhcC
Q 004225 723 ARLVEAAEGFKKIEDLKRH 741 (767)
Q Consensus 723 ~~~l~~~g~~~~l~~l~~~ 741 (767)
.+..-+.|.++.|.++++.
T Consensus 2123 VAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2123 VAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHHHhccCcHHHHHHHhcc
Confidence 4444489999999999754
No 139
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00094 Score=69.15 Aligned_cols=288 Identities=14% Similarity=0.052 Sum_probs=165.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCC-hHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPP-SEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
.|-|-..+++.-..+.+++++....++..+ ....+ +..+..|-.+|++.. ...|..|+++|..++....+.+.-+
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~-~~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~vc-- 341 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFV-DQTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVSVC-- 341 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceeeec--
Confidence 455555666777888999999999988333 22222 234677778888888 8899999999999987322222211
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
=+-+-.++.+.+..+...|+.+|-. .++.+..+.++ ..+.+++ .+-+...+..++.++..++-.-|.....
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv-----~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~s- 412 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLK--TGTEETIDRLV-----NLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKLS- 412 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHH-----HHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHHH-
Confidence 1334455666776665555555543 23344433332 3333444 4445556666777777777665443332
Q ss_pred hhchHHHHHHHh-cCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 520 VRPALPALAQLV-HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 520 ~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
.+..|...+ +.+.-+.+..+..++..+..+.++..+. +++.|..++.+... ..-+.++|+-+....+
T Consensus 413 ---~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey----~~I~vrIL~iLG~EgP 480 (898)
T COG5240 413 ---YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY----HQITVRILGILGREGP 480 (898)
T ss_pred ---HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch----hHHHHHHHHHhcccCC
Confidence 334444333 3556788888888888888777655443 45566666666533 2233344444432222
Q ss_pred cceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 004225 599 FLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIK 678 (767)
Q Consensus 599 ~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~ 678 (767)
... .... .+..+.+-+--.+..||..|..||..++...+... ....+..
T Consensus 481 ~a~------------------~P~~---------yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~ 529 (898)
T COG5240 481 RAK------------------TPGK---------YVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVEN 529 (898)
T ss_pred CCC------------------Ccch---------HHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHH
Confidence 100 0111 12223333333455677777778777766432221 1222455
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 679 PLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 679 ~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
.|.+++++.|.++|..|..++.++-.
T Consensus 530 ~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 530 ALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 66777777888888888777777653
No 140
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.70 E-value=0.0016 Score=73.53 Aligned_cols=254 Identities=14% Similarity=0.138 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh------hhhHHHHhCCChHHHHH
Q 004225 372 DSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS------ENTNVVIDGGAVPIFVK 445 (767)
Q Consensus 372 ~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~------~~~~~~~~~~~l~~L~~ 445 (767)
..+.+.+|+..|+.++.-..+...-..++|.++.++.++. .++|..|+.+|..+.. ..-..++.+=++|.|-.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 4677899999999988333334444578999999999999 9999999999999988 11123334456788888
Q ss_pred hhCC-CCHHHHHHHHHHHHHHhc------------------CCchh-----------HHHHHhcCCHHHHHHHHccCCCh
Q 004225 446 LLSS-PSDDVREKAVWALGNIAR------------------SSPRD-----------RDLVLSEKALIPLLAQLNKHAKP 495 (767)
Q Consensus 446 lL~~-~~~~v~~~a~~~L~nl~~------------------~~~~~-----------~~~~~~~g~i~~L~~ll~~~~~~ 495 (767)
++.+ ....+|..-+..|+.+|. +.++. .+.++ .++-+....++ .++++
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~~V~~~v~sLl-sd~~~ 592 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-HTVEQMVSSLL-SDSPP 592 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-HHHHHHHHHHH-cCCch
Confidence 8877 444555555555555542 11110 11111 11223334445 66667
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcC
Q 004225 496 SMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLH 575 (767)
Q Consensus 496 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 575 (767)
-|++..+..+.-||.-. -+.....-+++.|+.+|++.|..+|.+-...+..++..-... -++..++|.|.+.|.+
T Consensus 593 ~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLTD 667 (1431)
T ss_pred HHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhccC
Confidence 78888887777776432 122223357888999999999999988888887766432211 1233578999999999
Q ss_pred CCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHH
Q 004225 576 PLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARA 655 (767)
Q Consensus 576 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 655 (767)
..+ .|...|+.++.-+++..- -....+. .+++...-+|-+++.-+|+.++..
T Consensus 668 ~EE--~Viv~aL~~ls~Lik~~l------------------------l~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~i 719 (1431)
T KOG1240|consen 668 GEE--AVIVSALGSLSILIKLGL------------------------LRKPAVK--DILQDVLPLLCHPNLWIRRAVLGI 719 (1431)
T ss_pred cch--hhHHHHHHHHHHHHHhcc------------------------cchHHHH--HHHHhhhhheeCchHHHHHHHHHH
Confidence 998 666666666655543211 0011111 134445556667788888888888
Q ss_pred HHHhhc
Q 004225 656 ISNAIS 661 (767)
Q Consensus 656 L~nl~~ 661 (767)
+...+.
T Consensus 720 I~~~~~ 725 (1431)
T KOG1240|consen 720 IAAIAR 725 (1431)
T ss_pred HHHHHh
Confidence 877764
No 141
>PF05536 Neurochondrin: Neurochondrin
Probab=97.69 E-value=0.019 Score=63.00 Aligned_cols=242 Identities=17% Similarity=0.189 Sum_probs=161.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchh---HHHHHhcCCHHHHHHHHccC------CChHHHHHHHHHHHhhc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD---RDLVLSEKALIPLLAQLNKH------AKPSMLRNATKTLSRFC 509 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~ll~~~------~~~~~~~~~~~~L~~l~ 509 (767)
.+...+.+|+..+.+-|..++..+.++....+.. ++.+.+.=+.+.+-.+|+.. +....+.-|+..|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3566778888888788888888999998766532 33466665667777777421 34567888999999999
Q ss_pred CCCCCCCccchhchHHHHHHHhcCCCH-HHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHH
Q 004225 510 QGKPEPPFDQVRPALPALAQLVHSNDN-DVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLW 588 (767)
Q Consensus 510 ~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~ 588 (767)
..+.........+-||.++..+.+.+. ++...++.+|..++.. ++-.+.+.+.|.++.+.+.+.+.. .....|+.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~~~---~~~E~Al~ 161 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPNQS---FQMEIALN 161 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHhCc---chHHHHHH
Confidence 976555666777889999999987776 9999999999999954 456666888999999999999843 44555555
Q ss_pred HHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHH
Q 004225 589 TVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQI 668 (767)
Q Consensus 589 ~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 668 (767)
++.++........ | .+..+.+ ..+++.+-..........+-+++..|.++.........
T Consensus 162 lL~~Lls~~~~~~----------~---------~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~ 220 (543)
T PF05536_consen 162 LLLNLLSRLGQKS----------W---------AEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPL 220 (543)
T ss_pred HHHHHHHhcchhh----------h---------hhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcccc
Confidence 5555542211000 0 0000111 12455666666666777788888888888765311100
Q ss_pred HHH----HHcCChHHHHhhhcCC-CHHHHHHHHHHHHHHHHh
Q 004225 669 KYL----VRKGCIKPLCDLLLYA-DPEIVTICLKGLENILKV 705 (767)
Q Consensus 669 ~~l----~~~~~i~~L~~ll~~~-~~~v~~~al~aL~~l~~~ 705 (767)
... .-..+...+..++.+. .+.-|..++.....++..
T Consensus 221 ~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 221 ESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred ccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 111 1123455566666654 566777788888877765
No 142
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.67 E-value=6.7e-07 Score=88.07 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=74.1
Q ss_pred hccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccc
Q 004225 193 IRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDV 272 (767)
Q Consensus 193 ~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 272 (767)
+++...+.+|+-|+++.- .+..+ +.++.+..|++|++.. +.++.+ +..+.+++++|..|++.+.. ++++|.+..-
T Consensus 199 P~~lg~l~~L~~LyL~~N-ki~~l-Pef~gcs~L~Elh~g~-N~i~~l-pae~~~~L~~l~vLDLRdNk-lke~Pde~cl 273 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRN-KIRFL-PEFPGCSLLKELHVGE-NQIEML-PAEHLKHLNSLLVLDLRDNK-LKEVPDEICL 273 (565)
T ss_pred ChhhcchhhhHHHHhhhc-ccccC-CCCCccHHHHHHHhcc-cHHHhh-HHHHhcccccceeeeccccc-cccCchHHHH
Confidence 455556777888888653 33433 3566778888888854 355555 34455678889999988744 8888877655
Q ss_pred ccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 273 VAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 273 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
+.+|.+|++++ ..+.+++.. ..++ .|+.|.+.|.|
T Consensus 274 --------LrsL~rLDlSN-N~is~Lp~s--Lgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 274 --------LRSLERLDLSN-NDISSLPYS--LGNL-HLKFLALEGNP 308 (565)
T ss_pred --------hhhhhhhcccC-CccccCCcc--cccc-eeeehhhcCCc
Confidence 78899999986 466777643 2344 66677777665
No 143
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.65 E-value=5.8e-05 Score=68.70 Aligned_cols=130 Identities=19% Similarity=0.275 Sum_probs=42.6
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCC
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGD 85 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 85 (767)
.++++|+|.|+. +..+...+ ..+.+|++|+++++. ++.+ +.+..+++|++|++++. +++++..+
T Consensus 19 ~~~~~L~L~~n~-I~~Ie~L~--~~l~~L~~L~Ls~N~-I~~l----------~~l~~L~~L~~L~L~~N-~I~~i~~~- 82 (175)
T PF14580_consen 19 VKLRELNLRGNQ-ISTIENLG--ATLDKLEVLDLSNNQ-ITKL----------EGLPGLPRLKTLDLSNN-RISSISEG- 82 (175)
T ss_dssp ------------------S----TT-TT--EEE-TTS---S------------TT----TT--EEE--SS----S-CHH-
T ss_pred cccccccccccc-cccccchh--hhhcCCCEEECCCCC-Cccc----------cCccChhhhhhcccCCC-CCCccccc-
Confidence 357888888874 44442222 257788899988875 6655 34555788889888763 34444211
Q ss_pred CcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeec
Q 004225 86 LDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIG 163 (767)
Q Consensus 86 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (767)
+ ...||+|++|++.+.. +.+.. ....-..+++|+.|++.+++.... ...=...+..+|+|+.|+-.
T Consensus 83 l-~~~lp~L~~L~L~~N~-I~~l~-~l~~L~~l~~L~~L~L~~NPv~~~---------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 L-DKNLPNLQELYLSNNK-ISDLN-ELEPLSSLPKLRVLSLEGNPVCEK---------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-HHH-TT--EEE-TTS----SCC-CCGGGGG-TT--EEE-TT-GGGGS---------TTHHHHHHHH-TT-SEETTE
T ss_pred h-HHhCCcCCEEECcCCc-CCChH-HhHHHHcCCCcceeeccCCcccch---------hhHHHHHHHHcChhheeCCE
Confidence 0 1247899999887653 22221 112224688888888888874221 01112346667777777543
No 144
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.63 E-value=0.002 Score=61.98 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=140.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceee
Q 004225 524 LPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQC 603 (767)
Q Consensus 524 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 603 (767)
...|-++++.-++-.+.-|+.++.++........-.-.+...-..+++.+++.-...++|...+.++..++.+..-. +.
T Consensus 151 leyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~a-qd 229 (432)
T COG5231 151 LEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECA-QD 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHH-HH
Confidence 34444555666666788888999988766543333333555667788888776432378899998888887654422 22
Q ss_pred h--------------------hhhHHHHHHHhhhccCC-HHHHHHHHHcCCHHHHHHHHhc-C--CchhHHHHHHHHHHh
Q 004225 604 T--------------------GIAKEACRTISNITAGN-REQIQVVIDAGVIGPLVDLLQN-A--EFFTKKEAARAISNA 659 (767)
Q Consensus 604 l--------------------~v~~~a~~~l~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~-~--~~~v~~~a~~~L~nl 659 (767)
+ .+.+-++.++.|++... ...+..+.-.|-+..-++.|.. + +.+++...-..=..+
T Consensus 230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l 309 (432)
T COG5231 230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 2 55666788888888843 2333333333333334444432 2 333333222221111
Q ss_pred hcC-----------------------------CCHHHHHHHHHc--CChHHHHhhhcCCCHH-HHHHHHHHHHHHHHhhh
Q 004225 660 ISG-----------------------------GTHEQIKYLVRK--GCIKPLCDLLLYADPE-IVTICLKGLENILKVGE 707 (767)
Q Consensus 660 ~~~-----------------------------~~~~~~~~l~~~--~~i~~L~~ll~~~~~~-v~~~al~aL~~l~~~~~ 707 (767)
... .-.+.+..+.+. .+++.|..+++++++. ....|+.-|..+++.
T Consensus 310 ~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~-- 387 (432)
T COG5231 310 VQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRA-- 387 (432)
T ss_pred HhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh--
Confidence 100 012234444442 4688889999887776 455677778887764
Q ss_pred hhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 004225 708 AEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSC 760 (767)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 760 (767)
.++....+.+.|+-+.+.++++|++++|+-.|..++..+.+.
T Consensus 388 -----------~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 388 -----------SPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred -----------CchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 234577889999999999999999999999999999877543
No 145
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00019 Score=72.46 Aligned_cols=211 Identities=14% Similarity=0.085 Sum_probs=111.7
Q ss_pred cCCChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHh-cCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHH
Q 004225 491 KHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLV-HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPR 568 (767)
Q Consensus 491 ~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 568 (767)
++..+..+...+.++.++.... ...+.... ...+.+..-. .+++.-++.+|.+++.-+.-+..-......-......
T Consensus 359 Ds~~~Tl~~s~Cdals~i~~~~f~~lpn~~~-T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~ 437 (728)
T KOG4535|consen 359 DSEHPTLQASACDALSSILPEAFSNLPNDRQ-TLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANA 437 (728)
T ss_pred hhcCCCchhHHHHHHhhcCchhhcCCCCcch-hhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHH
Confidence 4455667777888888887554 11111111 1222222222 2334556777777777766555433333333356677
Q ss_pred HHHHhcCCCCCCcccchHHHHHhhhhcc----CCc---ceeeh-hhhHHHHHHHhhhccCCHHH---------------H
Q 004225 569 LVKLLLHPLPFPFGLTPPLWTVRYIVKG----DGF---LTQCT-GIAKEACRTISNITAGNREQ---------------I 625 (767)
Q Consensus 569 L~~lL~~~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~l-~v~~~a~~~l~nl~~~~~~~---------------~ 625 (767)
+...+.+... ..+..+.|+++|++.. .+. ....+ .++..+.|...+.+....+. .
T Consensus 438 il~sl~d~~l--n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 438 ILMSLEDKSL--NVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHhhhHhH--hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence 7777777777 8889999999999732 221 11111 33334444444443321111 1
Q ss_pred HHHHHcCC-------HHHHHH-HHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC-CCHHHHHHHH
Q 004225 626 QVVIDAGV-------IGPLVD-LLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY-ADPEIVTICL 696 (767)
Q Consensus 626 ~~~~~~~~-------i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al 696 (767)
+.+.+.+. +..++. ..-....+||=+||++++|+..+..-.....=....+++.|..++.+ .|-+||.+|.
T Consensus 516 q~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA 595 (728)
T KOG4535|consen 516 QPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAA 595 (728)
T ss_pred HHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhh
Confidence 11111111 000000 01123668999999999999985321111111122467778887765 6778888888
Q ss_pred HHHHHHHH
Q 004225 697 KGLENILK 704 (767)
Q Consensus 697 ~aL~~l~~ 704 (767)
.+|..-.+
T Consensus 596 ~aL~vp~~ 603 (728)
T KOG4535|consen 596 AALSVPGK 603 (728)
T ss_pred hhhcCCCC
Confidence 88865443
No 146
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.63 E-value=0.00013 Score=58.89 Aligned_cols=87 Identities=30% Similarity=0.476 Sum_probs=67.7
Q ss_pred hHHHHhhc-cCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 004225 400 VARFVEFL-TREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLS 478 (767)
Q Consensus 400 i~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 478 (767)
++.|++.+ ++++ +.+|..|+++|+.+.. ..+++.|+++++++++.+|..|+++|+.+. .
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIG-----------D 60 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------H
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------C
Confidence 57788888 5555 9999999999885532 135889999999999999999999999874 1
Q ss_pred cCCHHHHHHHHccCCChHHHHHHHHHHH
Q 004225 479 EKALIPLLAQLNKHAKPSMLRNATKTLS 506 (767)
Q Consensus 479 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~ 506 (767)
..+++.+.+++.++.+..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2377889998855566777888988874
No 147
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.57 E-value=1e-06 Score=86.82 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=92.5
Q ss_pred cccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEV 278 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 278 (767)
+..|++|+... +.++.+++..+.+.+|..|++++. ++.++| + ++++..|++|++... .++-++.....
T Consensus 182 m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lP-e--f~gcs~L~Elh~g~N-~i~~lpae~~~------ 249 (565)
T KOG0472|consen 182 MKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLP-E--FPGCSLLKELHVGEN-QIEMLPAEHLK------ 249 (565)
T ss_pred HHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCC-C--CCccHHHHHHHhccc-HHHhhHHHHhc------
Confidence 67788777632 456788888999999999999875 466665 2 467888999988763 35555544432
Q ss_pred ccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhcccc
Q 004225 279 ITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 279 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~~ 342 (767)
.+++|..|++.+ .++++.|.+.| .+.+|++|++++. .+..+|...... .|+.+.+.|.
T Consensus 250 -~L~~l~vLDLRd-Nklke~Pde~c--lLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 250 -HLNSLLVLDLRD-NKLKEVPDEIC--LLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred -ccccceeeeccc-cccccCchHHH--HhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence 178888888886 58999986643 5789999999876 788888765555 6888888884
No 148
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.034 Score=62.20 Aligned_cols=290 Identities=17% Similarity=0.144 Sum_probs=170.1
Q ss_pred CchHHHHhhcc------CC-CCHHHHHHHHHHHHHHHh-----hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHH
Q 004225 398 GVVARFVEFLT------RE-DNPQLQLEAARALTNIAS-----ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNI 465 (767)
Q Consensus 398 g~i~~L~~ll~------~~-~~~~~~~~a~~~L~~l~~-----~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl 465 (767)
|.++-+++.+. .+ +++.-+.-|.++++.+++ ..-+...+.=+++.+...++++.--+|.+|+|+++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 45666666665 22 236677788999999888 2222334444677777888889999999999999999
Q ss_pred hcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCC---ccchhchHHHHHHHhcCCCHHHHHHH
Q 004225 466 ARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP---FDQVRPALPALAQLVHSNDNDVLRYA 542 (767)
Q Consensus 466 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~---~~~~~~~i~~L~~ll~~~~~~v~~~a 542 (767)
+..+-. +...-..+++...+.+..+.+-.|+..|+.||..+..+.+..+ .....+.++.++.+.+..+.+....+
T Consensus 490 ~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 943221 1122233667777888558889999999999999988764432 23445666677777776655555555
Q ss_pred HHHH-HhhccCChhHHHHHHhcCcHHHHHHHhcCCCC-CCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccC
Q 004225 543 CEAL-SCLSDGTNDKIQAVIEADVCPRLVKLLLHPLP-FPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAG 620 (767)
Q Consensus 543 ~~~L-~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~ 620 (767)
+..+ +..++.-......++. .......+++.+.+. .+.....++.++|-+- ++.++---...
T Consensus 568 me~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~---------------Ti~Til~s~e~ 631 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILR---------------TISTILLSLEN 631 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHH---------------HHHHHHHHHhc
Confidence 5433 3333222222222222 456667777775211 1133333333333331 11111111112
Q ss_pred CHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHH
Q 004225 621 NREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLE 700 (767)
Q Consensus 621 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~ 700 (767)
.++..+. ++..+++.+-.++++.-.++-.++...+.++... .++....+. |.++.+.+.+....-+--....-+|.
T Consensus 632 ~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~-~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~ 707 (1010)
T KOG1991|consen 632 HPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL-SKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALH 707 (1010)
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh-hcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 2333332 2334567777777888788888888877777654 222222222 25666666666666666677777777
Q ss_pred HHHHhhhhh
Q 004225 701 NILKVGEAE 709 (767)
Q Consensus 701 ~l~~~~~~~ 709 (767)
|++..+...
T Consensus 708 N~vt~g~~~ 716 (1010)
T KOG1991|consen 708 NYVTYGTPS 716 (1010)
T ss_pred hheeeCchh
Confidence 777765543
No 149
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.54 E-value=0.0015 Score=63.86 Aligned_cols=183 Identities=19% Similarity=0.199 Sum_probs=117.5
Q ss_pred cCCCHHHHHHHHHHHHHhc--C---CChHHHHh--cCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCC
Q 004225 369 WSDDSGLQLEATTWFRKLL--L---PPSEKVIQ--SGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGG 438 (767)
Q Consensus 369 ~s~~~~~~~~a~~~L~~l~--~---~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~ 438 (767)
.+.+.+.+..|+..|+.++ . .....++. ..++..+...+.+.. ..+...|+.++..++. ...+..+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 5788999999999999998 3 22333322 155667777777777 7888999999999998 3333332 34
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC-CCCc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP-EPPF 517 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-~~~~ 517 (767)
++|.|+..+.+....++..|..+|..++...+...+ + ....+.... .+.++.+|..++..+..+....+ ....
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 789999999999999999999999999976541112 1 134555555 89999999999999998877654 1222
Q ss_pred cc----hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHH
Q 004225 518 DQ----VRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQA 559 (767)
Q Consensus 518 ~~----~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 559 (767)
.. ...+++.+...+.+.++++|..|-.++..+....++....
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~ 214 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAES 214 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhcc
Confidence 22 3568888899999999999999999998887655444443
No 150
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.53 E-value=0.00043 Score=55.83 Aligned_cols=86 Identities=35% Similarity=0.551 Sum_probs=69.9
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 440 VPIFVKLL-SSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 440 l~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
+|.|++.| +++++.+|..++++|+.+-. ..+++.++.++ .++++.++..++++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELL-KDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHH-TSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHH-cCCCHHHHHHHHHHHHHhC---------
Confidence 57899988 78999999999999994431 12578999999 8999999999999999884
Q ss_pred chhchHHHHHHHhcCCC-HHHHHHHHHHHH
Q 004225 519 QVRPALPALAQLVHSND-NDVLRYACEALS 547 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~ 547 (767)
...+++.|..++.+++ ..++..++.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3458999999888755 556888888774
No 151
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.53 E-value=0.0017 Score=73.20 Aligned_cols=292 Identities=16% Similarity=0.164 Sum_probs=171.5
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC---chhHHH
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSS---PRDRDL 475 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~---~~~~~~ 475 (767)
+++.+...+++-.....+..|+..|..++...-....=.-++|.++.++.++..+||..|+.+|..+...- +..-..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 35566666665444678999999999998811111222357999999999999999999999998876321 111111
Q ss_pred HHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHH-----HhcCCCHHHHHHHHHHHHhhc
Q 004225 476 VLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQ-----LVHSNDNDVLRYACEALSCLS 550 (767)
Q Consensus 476 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~-----ll~~~~~~v~~~a~~~L~~l~ 550 (767)
+...=..+.|-.++.++....+|..-+..|+.+|... .+++..-.. ++++.+.+ ..-.
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--------~rFle~~q~~~~~g~~n~~nse---------t~~~ 565 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--------YRFLELTQELRQAGMLNDPNSE---------TAPE 565 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--------HHHHHHHHHHHhcccccCcccc---------cccc
Confidence 2222245555555533355667777777777777441 111111000 11222222 0000
Q ss_pred cCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc--CCHHHHHHH
Q 004225 551 DGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA--GNREQIQVV 628 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~--~~~~~~~~~ 628 (767)
...+...+++.+ .+-..+..++.++++ .|++..+..|.-++. +-..
T Consensus 566 ~~~~~~~~~L~~-~V~~~v~sLlsd~~~--------------------------~Vkr~Lle~i~~LC~FFGk~k----- 613 (1431)
T KOG1240|consen 566 QNYNTELQALHH-TVEQMVSSLLSDSPP--------------------------IVKRALLESIIPLCVFFGKEK----- 613 (1431)
T ss_pred cccchHHHHHHH-HHHHHHHHHHcCCch--------------------------HHHHHHHHHHHHHHHHhhhcc-----
Confidence 111122333332 355666777777776 344444444443332 1000
Q ss_pred HHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhh
Q 004225 629 IDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 629 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 708 (767)
-+.-+++.|+..|.+.++.+|..-...+.-++....... .+...++.|..-+.++.+.|...|+.++..+++.+--
T Consensus 614 sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 614 SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc
Confidence 012357889999999988888876665554443211111 2334678888888899999999999999999986544
Q ss_pred hhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 004225 709 EMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYW 758 (767)
Q Consensus 709 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 758 (767)
++. +... .++....++-++|.=||..+..+|-...
T Consensus 690 ~K~----------~v~~-----i~~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 690 RKP----------AVKD-----ILQDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred chH----------HHHH-----HHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence 331 1222 2455667789999999988888876553
No 152
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.031 Score=56.65 Aligned_cols=216 Identities=13% Similarity=0.171 Sum_probs=153.3
Q ss_pred HHHHHHHHhc-CCCh-HHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh------------hhhHHHHhCCChHHH
Q 004225 378 EATTWFRKLL-LPPS-EKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS------------ENTNVVIDGGAVPIF 443 (767)
Q Consensus 378 ~a~~~L~~l~-~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~------------~~~~~~~~~~~l~~L 443 (767)
..++.+..++ -|.. ..+++...++.|++++.+++ .++....+..+..+.. .-.+.+++.++++.|
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 3555566666 4554 46789999999999999999 8999999999999988 224567789999999
Q ss_pred HHhhCCCCH------HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCC-CCC
Q 004225 444 VKLLSSPSD------DVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGK-PEP 515 (767)
Q Consensus 444 ~~lL~~~~~------~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~-~~~ 515 (767)
++-++.-|. .-...+...+-|+....+.+...+.+.|.+.-|+..+. ..+-..-...|...++-+.+++ .+.
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 998876333 33456678888999888888888888888888887653 3344455666777777777666 344
Q ss_pred CccchhchHHHHHHHhc-----C---C-CHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchH
Q 004225 516 PFDQVRPALPALAQLVH-----S---N-DNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPP 586 (767)
Q Consensus 516 ~~~~~~~~i~~L~~ll~-----~---~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a 586 (767)
.....-.++..+++-+. + . ..+..++...+|+...... .+...+....++..+.-+++... ..+..|
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-~nr~~Fl~~EGlqLm~Lmlr~Kk---~sr~Sa 337 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-ANRERFLKGEGLQLMNLMLREKK---VSRGSA 337 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-hhhhhhhccccHHHHHHHHHHHH---HhhhhH
Confidence 44444456666665553 1 1 3677888888888777665 45555777778887777777744 556677
Q ss_pred HHHHhhhhccCC
Q 004225 587 LWTVRYIVKGDG 598 (767)
Q Consensus 587 ~~~L~~l~~~~~ 598 (767)
+++|-+...+++
T Consensus 338 lkvLd~am~g~~ 349 (536)
T KOG2734|consen 338 LKVLDHAMFGPE 349 (536)
T ss_pred HHHHHHHHhCCC
Confidence 777777765554
No 153
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.48 E-value=0.00098 Score=65.09 Aligned_cols=185 Identities=19% Similarity=0.230 Sum_probs=110.3
Q ss_pred cCCCHHHHHHHHHHHHhhccCC--hhHHHHHHh--cCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhh
Q 004225 532 HSNDNDVLRYACEALSCLSDGT--NDKIQAVIE--ADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIA 607 (767)
Q Consensus 532 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~--~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~ 607 (767)
.+.|.+.+..++.-|..+..++ ......+.+ ..++..+...+.+... .+.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs--------------------------~v~ 70 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS--------------------------KVS 70 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----------------------------HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH--------------------------HHH
Confidence 5678999999999999988665 222222221 1455666666666665 455
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCC-HHHHHHHHHcCChHHHHhhhcC
Q 004225 608 KEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGT-HEQIKYLVRKGCIKPLCDLLLY 686 (767)
Q Consensus 608 ~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~l~~~~~i~~L~~ll~~ 686 (767)
+.|+.++..++.......+...+ .++|.|+..+.++...++..|..+|..++.... .... .+..+.....+
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~-~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------~~~~l~~~~~~ 142 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYAD-ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------LLEILSQGLKS 142 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------HHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------HHHHHHHHHhC
Confidence 55555555555422222333322 368889999999888999999999999998754 1211 15566777889
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 687 ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 687 ~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
+++.+|..++..+..++........ .. .....-....+.+...+.+.+++||+.|..++..|+.
T Consensus 143 Kn~~vR~~~~~~l~~~l~~~~~~~~------~l---~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 143 KNPQVREECAEWLAIILEKWGSDSS------VL---QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp S-HHHHHHHHHHHHHHHTT-----G------GG-----HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHh------hh---cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999876541110 00 0000113346788899999999999999999988754
No 154
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.03 Score=52.97 Aligned_cols=245 Identities=20% Similarity=0.225 Sum_probs=152.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCC
Q 004225 370 SDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSS 449 (767)
Q Consensus 370 s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~ 449 (767)
+.-..-+..|+..|+++..+.. +..+.+...++. ...+..++.+|+.+. ...++|.++..+.+
T Consensus 16 s~~l~~r~rALf~Lr~l~~~~~--------i~~i~ka~~d~s-~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~d 78 (289)
T KOG0567|consen 16 SQPLQNRFRALFNLRNLLGPAA--------IKAITKAFIDDS-ALLKHELAYVLGQMQ--------DEDAVPVLVEVLLD 78 (289)
T ss_pred cHHHHHHHHHHHhhhccCChHH--------HHHHHHhcccch-hhhccchhhhhhhhc--------cchhhHHHHHHhcc
Confidence 3445567778888888762221 444555555554 456666777777654 45689999998876
Q ss_pred --CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC------Ccc---
Q 004225 450 --PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP------PFD--- 518 (767)
Q Consensus 450 --~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~------~~~--- 518 (767)
..+-+|..|+.+|+.+. . +. ..+.+-+.. +++-..+++.|..++..+-..+... ...
T Consensus 79 esq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~Svd 146 (289)
T KOG0567|consen 79 ESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVD 146 (289)
T ss_pred cccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCccccCC
Confidence 55889999999999887 2 22 345555666 7778888888888877664322000 000
Q ss_pred ----chhchHHHHHHHhcCCC-HHH-HHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhh
Q 004225 519 ----QVRPALPALAQLVHSND-NDV-LRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRY 592 (767)
Q Consensus 519 ----~~~~~i~~L~~ll~~~~-~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~ 592 (767)
...+-+.-+-..+.+.+ +.. +..++..|.|+.. ++.+ ..+++-+..++.
T Consensus 147 Pa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--EeaI---------~al~~~l~~~Sa-------------- 201 (289)
T KOG0567|consen 147 PAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EEAI---------NALIDGLADDSA-------------- 201 (289)
T ss_pred CCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HHHH---------HHHHHhcccchH--------------
Confidence 11222333443333332 222 4455555555422 2233 334445555554
Q ss_pred hhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--CchhHHHHHHHHHHhhcCCCHHHHHH
Q 004225 593 IVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA--EFFTKKEAARAISNAISGGTHEQIKY 670 (767)
Q Consensus 593 l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~ 670 (767)
-.+.++.+++|.+-.. -.++.|.+.|... ++.||.+|+.||+.++.. +
T Consensus 202 ------------lfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---- 251 (289)
T KOG0567|consen 202 ------------LFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---- 251 (289)
T ss_pred ------------HHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H----
Confidence 5677888888865442 3578888887754 689999999999998863 3
Q ss_pred HHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 004225 671 LVRKGCIKPLCDLLLYADPEIVTICLKGLENIL 703 (767)
Q Consensus 671 l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~ 703 (767)
.++.|.+.+.+.++-|++.+.-+|..+-
T Consensus 252 -----~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 252 -----CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred -----HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3556677888888778777777776554
No 155
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.014 Score=62.84 Aligned_cols=238 Identities=15% Similarity=0.121 Sum_probs=148.3
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 004225 401 ARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEK 480 (767)
Q Consensus 401 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g 480 (767)
+.+-+-|++++ +-+|-..++.|.++-. .+ ++ +..+|.+.+.|++...-||.+|..+++.+-..... + -.+
T Consensus 102 na~RkDLQHPN-EyiRG~TLRFLckLkE--~E-Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~~~----L-~pD 171 (948)
T KOG1058|consen 102 NAYRKDLQHPN-EYIRGSTLRFLCKLKE--PE-LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----L-IPD 171 (948)
T ss_pred HHHhhhccCch-HhhcchhhhhhhhcCc--HH-Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh----h-cCC
Confidence 34445677777 6777766666666533 11 11 35678888899999999999999999988754221 1 123
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc---CCCHHHHHHHHHHHHhhccCChhHH
Q 004225 481 ALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH---SNDNDVLRYACEALSCLSDGTNDKI 557 (767)
Q Consensus 481 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~ 557 (767)
+-+.+-.+|....|+..+++|...|...-.. .++..+...+. +-++..+...+..+...|..++...
T Consensus 172 apeLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~ 241 (948)
T KOG1058|consen 172 APELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK 241 (948)
T ss_pred hHHHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence 4444455665677888888887766654433 34555544443 2336666677777777776555433
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc-CCHHHHHHHH-------
Q 004225 558 QAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA-GNREQIQVVI------- 629 (767)
Q Consensus 558 ~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~-~~~~~~~~~~------- 629 (767)
. ..+..+..+|.+.++ .++..|...+..++..+. ..+.|+.++..++. .+....+.++
T Consensus 242 ~-----~~i~~i~~lL~stss--aV~fEaa~tlv~lS~~p~-------alk~Aa~~~i~l~~kesdnnvklIvldrl~~l 307 (948)
T KOG1058|consen 242 A-----RYIRCIYNLLSSTSS--AVIFEAAGTLVTLSNDPT-------ALKAAASTYIDLLVKESDNNVKLIVLDRLSEL 307 (948)
T ss_pred h-----HHHHHHHHHHhcCCc--hhhhhhcceEEEccCCHH-------HHHHHHHHHHHHHHhccCcchhhhhHHHHHHH
Confidence 3 356788888888887 888888888877764433 33444444333333 2222222111
Q ss_pred -------HcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHH
Q 004225 630 -------DAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLV 672 (767)
Q Consensus 630 -------~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~ 672 (767)
=.|.+--++..|..++-++++.+......++...+.+.+..++
T Consensus 308 ~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~L 357 (948)
T KOG1058|consen 308 KALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFL 357 (948)
T ss_pred hhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 1234556677788889999999998888887765555544443
No 156
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.12 Score=55.61 Aligned_cols=297 Identities=12% Similarity=0.068 Sum_probs=161.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCC-CHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED-NPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
+-.+.+-|.+.|+.-...|+..+.++-+.....-...+ ++ ++|.+.+ .+-++..|+-+|..+.+...+.+-..+.
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W 188 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADD-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEW 188 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhh-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhH
Confidence 44455567778888888888888887644333323222 22 4444443 3567888888888887744444444466
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc------------cCCChHHHHHHHHHHHh
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN------------KHAKPSMLRNATKTLSR 507 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~------------~~~~~~~~~~~~~~L~~ 507 (767)
...++.+|.+.+-.+...+...+.-++...++.-...+. -++..+..... .-+.|-++..++..|.+
T Consensus 189 ~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~ 267 (938)
T KOG1077|consen 189 AQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQI 267 (938)
T ss_pred HHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHh
Confidence 788999999888777777788888888766654221111 02222222221 11355666666666666
Q ss_pred hcCCCCCCCccchhchHHHHHHHhcCCC----------HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCC
Q 004225 508 FCQGKPEPPFDQVRPALPALAQLVHSND----------NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPL 577 (767)
Q Consensus 508 l~~~~~~~~~~~~~~~i~~L~~ll~~~~----------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~ 577 (767)
+-... +..........+-.++...+ ...+.+.+.-..+++.+-+...+.+. ..+..|-+++.+..
T Consensus 268 ~p~~~---D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE 342 (938)
T KOG1077|consen 268 YPTPE---DPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRE 342 (938)
T ss_pred CCCCC---CchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhccc
Confidence 52211 11122222222222332111 11222222222233322222222222 24555556666665
Q ss_pred CCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh-cCCchhHHHHHHHH
Q 004225 578 PFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ-NAEFFTKKEAARAI 656 (767)
Q Consensus 578 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L 656 (767)
. .++.-|+..+..++ .. ....+.+-.+ .+.++..|+ ..+..+|+.|+..|
T Consensus 343 ~--NiRYLaLEsm~~L~------------------------ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLL 393 (938)
T KOG1077|consen 343 T--NIRYLALESMCKLA------------------------SS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLL 393 (938)
T ss_pred c--cchhhhHHHHHHHH------------------------hc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHH
Confidence 5 44444444444443 32 2222333333 677888888 67889999999999
Q ss_pred HHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 657 SNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 657 ~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
..|+... .+.. ++.-|...+...++.+++...-=+.-+++
T Consensus 394 Y~mcD~~---Nak~-----IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 394 YAMCDVS---NAKQ-----IVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHhchh---hHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 9998753 3333 45566677777888888876555555544
No 157
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.034 Score=60.09 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=61.2
Q ss_pred chhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHH
Q 004225 646 FFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARL 725 (767)
Q Consensus 646 ~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~ 725 (767)
.+.|+.-..++..++.. -++.+.. +++.|++.+.+.++......+..+...++.-++ ++..
T Consensus 373 ~~yRqlLiktih~cav~-Fp~~aat-----vV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-------------Lr~~ 433 (948)
T KOG1058|consen 373 GKYRQLLIKTIHACAVK-FPEVAAT-----VVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-------------LRAS 433 (948)
T ss_pred hHHHHHHHHHHHHHhhc-ChHHHHH-----HHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-------------HHHH
Confidence 45677778888887776 3555444 788999999999987777777777766654322 2222
Q ss_pred HHhhchHHHHH-HHhcCCChHHHHHHHHHHHHhcCCCc
Q 004225 726 VEAAEGFKKIE-DLKRHDSNGICEKAVKILEIYWSCGV 762 (767)
Q Consensus 726 l~~~g~~~~l~-~l~~~~~~~v~~~a~~~l~~~~~~~~ 762 (767)
+ ++++. .+-.-.+..+..-|.|++.+|...+.
T Consensus 434 i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 434 I-----IEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred H-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 2 22222 22233567788889999998877654
No 158
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.00039 Score=70.33 Aligned_cols=282 Identities=15% Similarity=0.122 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--------hhhHHHHhCCChHHHH
Q 004225 374 GLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--------ENTNVVIDGGAVPIFV 444 (767)
Q Consensus 374 ~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--------~~~~~~~~~~~l~~L~ 444 (767)
.+++++.+.|..++ .-.........+...+...+...+ ++++..++.++.++.. +..+.-...+.+-.+.
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~ 348 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM 348 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence 57888888888887 333333333334455555666667 9999999999998876 1111111112111111
Q ss_pred H-------hhCCCCHHHHHHHHHHHHHHhcC----CchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-
Q 004225 445 K-------LLSSPSDDVREKAVWALGNIARS----SPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK- 512 (767)
Q Consensus 445 ~-------lL~~~~~~v~~~a~~~L~nl~~~----~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~- 512 (767)
- .-++.-+..+..++.++.++... -++.++. ....+..-..++++.-++..|..++.-+.-+.
T Consensus 349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~ 423 (728)
T KOG4535|consen 349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYVLHPC 423 (728)
T ss_pred ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence 0 01122234556666677776632 1111110 11111111113344446666777766665554
Q ss_pred CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC----Chh---HHHHHHhcCcHHHHHHHhcCCC-CCCcccc
Q 004225 513 PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG----TND---KIQAVIEADVCPRLVKLLLHPL-PFPFGLT 584 (767)
Q Consensus 513 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~~~~~~~~~~L~~lL~~~~-~~~~v~~ 584 (767)
..........+...+...+.+..-..++.+.|+++|+++. -+. ....+. ...+..++......+ ....|..
T Consensus 424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~ 502 (728)
T KOG4535|consen 424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKS 502 (728)
T ss_pred hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhh
Confidence 3445556667777777777787889999999999999854 111 111111 112333333322211 1238999
Q ss_pred hHHHHHhhhhccCCc-------------ceeeh---------hhhHHHHHHHhhhccCCHHHHH-HHHHcCCHHHHHHHH
Q 004225 585 PPLWTVRYIVKGDGF-------------LTQCT---------GIAKEACRTISNITAGNREQIQ-VVIDAGVIGPLVDLL 641 (767)
Q Consensus 585 ~a~~~L~~l~~~~~~-------------~~~~l---------~v~~~a~~~l~nl~~~~~~~~~-~~~~~~~i~~L~~ll 641 (767)
+|.++|+|+.+--+. ..+.+ .++-+||++++|+..+..-..+ .-....+++.|..++
T Consensus 503 navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 503 NAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV 582 (728)
T ss_pred HHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence 999999999742210 00101 8999999999999986332111 111223467777776
Q ss_pred h-cCCchhHHHHHHHHHHhhcC
Q 004225 642 Q-NAEFFTKKEAARAISNAISG 662 (767)
Q Consensus 642 ~-~~~~~v~~~a~~~L~nl~~~ 662 (767)
. ..+++||..|+.+|.--...
T Consensus 583 ~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 583 TSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred HHhccceEeehhhhhhcCCCCc
Confidence 6 56899999999998866543
No 159
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0028 Score=67.06 Aligned_cols=254 Identities=17% Similarity=0.163 Sum_probs=157.0
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhcC--CChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--------hhhHH
Q 004225 364 MLAGVWSDDSGLQLEATTWFRKLLL--PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--------ENTNV 433 (767)
Q Consensus 364 l~~~l~s~~~~~~~~a~~~L~~l~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--------~~~~~ 433 (767)
++....+.|..++..|+..|..+.. .-... .....++.+.+++ .++|.+|.+.+..+.. +.-+.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 6677788899999999998887772 11111 2466777888887 8999999777666655 11111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc----cCCChHHHHHHHHHHHhhc
Q 004225 434 VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN----KHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 434 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~~~~~L~~l~ 509 (767)
-....++..++..+.+.+..+|.+|+.+||.+-..+.+....-++ ..++.-++ .++-+. ....=+..+
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr~ahkrpk----~l~s~GewS 348 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKRTAHKRPK----ALYSSGEWS 348 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhhhcccchH----HHHhcCCcc
Confidence 122346788899999999999999999999887655554333333 22222221 111111 111111111
Q ss_pred CCC------------CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCC
Q 004225 510 QGK------------PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPL 577 (767)
Q Consensus 510 ~~~------------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~ 577 (767)
.+. .....+...|+-.+++.-+.++=.+||++|+..++.|+...+..... .+..|+..+.++.
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEI 423 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHH
Confidence 111 11223344666777787787777999999999999999877654332 5678999999998
Q ss_pred CCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHH
Q 004225 578 PFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAIS 657 (767)
Q Consensus 578 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 657 (767)
. +++..|+.++..++ .. ..++...++.+...|.+.+.++|.+.-..|.
T Consensus 424 ~--~VRL~ai~aL~~Is------------------------~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 424 E--VVRLKAIFALTMIS------------------------VH------LAIREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred H--HHHHHHHHHHHHHH------------------------HH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8 66655555555554 22 1122234566666777777777776666666
Q ss_pred HhhcCCCHHHHH
Q 004225 658 NAISGGTHEQIK 669 (767)
Q Consensus 658 nl~~~~~~~~~~ 669 (767)
+.-.. +.+.+.
T Consensus 472 ~~~~~-d~~~i~ 482 (823)
T KOG2259|consen 472 NARVS-DLECID 482 (823)
T ss_pred hcCCC-cHHHHH
Confidence 54333 444433
No 160
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.34 E-value=0.00043 Score=49.81 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=46.4
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHh
Q 004225 605 GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNA 659 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl 659 (767)
.+|..|+++|++++...++..+... ..+++.|+.+++++++.||..|+++|+++
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4788999999998887777777644 45899999999999999999999999875
No 161
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.33 E-value=0.00043 Score=51.12 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=38.4
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccc
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDL 75 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 75 (767)
|+|++|++.+| .++.+ +...+..+++|++|+++++. +..+. +.....+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~N~-l~~i~--------~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSNNN-LTSIP--------PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEE-CTTTTTTGTTESEEEETSSS-ESEEE--------TTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccCCc-cCccC--------HHHHcCCCCCCEEeCcCC
Confidence 56788888887 57777 44455678888888887654 55542 123455667777776654
No 162
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.027 Score=53.30 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC--CCHHHHHHHHHHHHHHHHhhhhhhc
Q 004225 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY--ADPEIVTICLKGLENILKVGEAEMN 711 (767)
Q Consensus 634 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~aL~~l~~~~~~~~~ 711 (767)
|..+++-+...+.-.|.+++++++.+-+.. .++.|.+.|.+ .++-+|+.|+.||..+...
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------ 250 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE------ 250 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------
Confidence 556666677778889999999999887642 45666666654 5789999999999998742
Q ss_pred cCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 712 TGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 712 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
..++.|+++.+++.+-|++-+.-+++-+
T Consensus 251 ------------------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 251 ------------------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred ------------------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1245567788888888888777777633
No 163
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.30 E-value=0.036 Score=59.47 Aligned_cols=262 Identities=16% Similarity=0.114 Sum_probs=157.4
Q ss_pred hHHHHhcCchHHHHhhc---------cCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCCC-----CHH
Q 004225 391 SEKVIQSGVVARFVEFL---------TREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSP-----SDD 453 (767)
Q Consensus 391 ~~~i~~~g~i~~L~~ll---------~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~~-----~~~ 453 (767)
.+.+....++..|.++- ....++.+..+|.++|.|+.. ..+..+.+.|..+.++..|+.. +.+
T Consensus 15 ~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d 94 (446)
T PF10165_consen 15 LDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSD 94 (446)
T ss_pred chhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChh
Confidence 44445445556665554 333348999999999999999 6778888999999999999875 789
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhc-CCHHHHHHHHcc---------C-------CChHHHHHHHHHHHhhcCCCCCCC
Q 004225 454 VREKAVWALGNIARSSPRDRDLVLSE-KALIPLLAQLNK---------H-------AKPSMLRNATKTLSRFCQGKPEPP 516 (767)
Q Consensus 454 v~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~ll~~---------~-------~~~~~~~~~~~~L~~l~~~~~~~~ 516 (767)
+......++.-++...+..+..+++. +++..++..+.. . .+......++.++.|+....+...
T Consensus 95 ~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~ 174 (446)
T PF10165_consen 95 VEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSV 174 (446)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCccc
Confidence 99999999999998888887766665 677777777630 0 144556678888999987764433
Q ss_pred ccchh----chHHHHHHHh---c--CCCHHHHHHHHHHHHhhccCChhH-------H----HHHHhcCcHHHHHHHhcCC
Q 004225 517 FDQVR----PALPALAQLV---H--SNDNDVLRYACEALSCLSDGTNDK-------I----QAVIEADVCPRLVKLLLHP 576 (767)
Q Consensus 517 ~~~~~----~~i~~L~~ll---~--~~~~~v~~~a~~~L~~l~~~~~~~-------~----~~~~~~~~~~~L~~lL~~~ 576 (767)
..... .++..+..++ . .+.......++.+|.|+--..... . ........+..++.+|...
T Consensus 175 ~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~ 254 (446)
T PF10165_consen 175 PEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKR 254 (446)
T ss_pred chhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHH
Confidence 32333 3444444441 1 123667778888888873211111 0 0001112344455554321
Q ss_pred ----CC--CCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHH--HcCCHHHHHHHHhcCCchh
Q 004225 577 ----LP--FPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVI--DAGVIGPLVDLLQNAEFFT 648 (767)
Q Consensus 577 ----~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~v 648 (767)
.. -++...+.+.+|..++..+. .+|+..-+ ..--....+..-. ...+-..|++++.+..+.+
T Consensus 255 l~~~~~~~l~~~l~PlL~lL~~~~~~~~------~~Rk~lr~----~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~ 324 (446)
T PF10165_consen 255 LDKYEALKLDELLTPLLTLLTRLARAAR------EVRKYLRA----RLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQL 324 (446)
T ss_pred HHhcCcccchhhHhhHHHHHHHHHHhcH------HHHHHHHH----HhCCChhhcccCCCCCcchHHHHHHHhCCCCchH
Confidence 10 01344455555555544332 11111111 1111111111111 1245688999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 004225 649 KKEAARAISNAISG 662 (767)
Q Consensus 649 ~~~a~~~L~nl~~~ 662 (767)
|..++..+..++..
T Consensus 325 k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 325 KDAVAELLFVLCKE 338 (446)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998888764
No 164
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.067 Score=59.93 Aligned_cols=305 Identities=15% Similarity=0.130 Sum_probs=173.5
Q ss_pred CHHHHHHHHHHHHHhc-----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHH
Q 004225 372 DSGLQLEATTWFRKLL-----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVK 445 (767)
Q Consensus 372 ~~~~~~~a~~~L~~l~-----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~ 445 (767)
++..+.-|+..++.++ ..+....++.=+++.++..++++. --.|.+|+|++..++. +.++...-..++.....
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~ 509 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNLSEALELTHN 509 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 4555666888888777 334445566667788888888888 7899999999999997 44444333445666777
Q ss_pred hhC-CCCHHHHHHHHHHHHHHhcCCchhHHHHHh--cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhc
Q 004225 446 LLS-SPSDDVREKAVWALGNIARSSPRDRDLVLS--EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRP 522 (767)
Q Consensus 446 lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 522 (767)
.|. +.+-.|+..|+-+|..+.++.+.....+.. .+.++.++++.+..++.++....=..++.++..-........+.
T Consensus 510 ~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~ 589 (1010)
T KOG1991|consen 510 CLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQN 589 (1010)
T ss_pred HhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 776 677889999999999999776644232221 23556666666444444444444444455655432233334455
Q ss_pred hHHHHHHHhcC---C---CHHHHHHHHHHHHhhc------cCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHH
Q 004225 523 ALPALAQLVHS---N---DNDVLRYACEALSCLS------DGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 523 ~i~~L~~ll~~---~---~~~v~~~a~~~L~~l~------~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L 590 (767)
......++++. . +.+-...|.++|..+. +..++..+. .+..+.+.+-..+++.-.
T Consensus 590 La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~------------ 656 (1010)
T KOG1991|consen 590 LAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDIT------------ 656 (1010)
T ss_pred HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhH------------
Confidence 56666666663 1 1333334444444432 112222221 122345555555555554
Q ss_pred hhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHH
Q 004225 591 RYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKY 670 (767)
Q Consensus 591 ~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 670 (767)
++-++++..+.+++...++....+. ++++.+.+.++....+.-....-+|.|++..+.+.....
T Consensus 657 --------------dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~ 720 (1010)
T KOG1991|consen 657 --------------DFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSN 720 (1010)
T ss_pred --------------HHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhcc
Confidence 4445555555554443222222222 367788888888878888888899999987765432211
Q ss_pred H-HHcCChHHHHhhhcC--CCHHHHHHHHHHHHHHHHhh
Q 004225 671 L-VRKGCIKPLCDLLLY--ADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 671 l-~~~~~i~~L~~ll~~--~~~~v~~~al~aL~~l~~~~ 706 (767)
- ...-.+..+..++.+ ....=.+.|+..+.-++-..
T Consensus 721 ~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~ 759 (1010)
T KOG1991|consen 721 PDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNC 759 (1010)
T ss_pred chHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 0 001122233333443 22333455777777666543
No 165
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.26 E-value=0.00026 Score=50.93 Aligned_cols=55 Identities=35% Similarity=0.421 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 004225 495 PSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCL 549 (767)
Q Consensus 495 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 549 (767)
+.+|..|+|+|++++...+.........+++.|..+++++++.|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999887765555557788999999999999999999999999875
No 166
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.078 Score=62.11 Aligned_cols=304 Identities=14% Similarity=0.100 Sum_probs=163.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-C-CChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-L-PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDG 437 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~ 437 (767)
||.|.+.-.++++.+|.+-...-..+. + ...-.-.-..+..-|+.-+.+.. -.+|+.++-+|..+.. ...+.+.+.
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke-wRVReasclAL~dLl~g~~~~~~~e~ 1078 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE-WRVREASCLALADLLQGRPFDQVKEK 1078 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 777777777888887765444444444 1 22212222345666777677766 7999999999999998 222222221
Q ss_pred --CChHHHHHhhCCCCHHHHHH---HHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc----cCCChHHHHHHHHHHHhh
Q 004225 438 --GAVPIFVKLLSSPSDDVREK---AVWALGNIARSSPRDRDLVLSEKALIPLLAQLN----KHAKPSMLRNATKTLSRF 508 (767)
Q Consensus 438 --~~l~~L~~lL~~~~~~v~~~---a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~~~~~L~~l 508 (767)
.....+.+..++-.+.+|+. ++.+++.++....+...-.-...++..++.++. -+.-+++|+.++.++..+
T Consensus 1079 lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl 1158 (1702)
T KOG0915|consen 1079 LPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDL 1158 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHH
Confidence 23344445555433445544 456666665211111100001113344444442 356789999999999999
Q ss_pred cCCCCCCCccchhchHHHHHHHhcCCCHHHHHH-HHHHHHhhccCC--hhHHHHHHhcCcHHHHHHHhcCCCCCCcccch
Q 004225 509 CQGKPEPPFDQVRPALPALAQLVHSNDNDVLRY-ACEALSCLSDGT--NDKIQAVIEADVCPRLVKLLLHPLPFPFGLTP 585 (767)
Q Consensus 509 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~-a~~~L~~l~~~~--~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~ 585 (767)
+...+..-.-.....+|.|+.....-.+.+.-+ ++++ .+..... +.+......+..++.+-.++.+-|. .+...
T Consensus 1159 ~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~--~vLee 1235 (1702)
T KOG0915|consen 1159 AKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDI--SVLEE 1235 (1702)
T ss_pred HHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH--HHHHH
Confidence 988766555566778888888887655544333 2332 2221110 0011111123344555555555554 43333
Q ss_pred HHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCH
Q 004225 586 PLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTH 665 (767)
Q Consensus 586 a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 665 (767)
-+--+..+..+.... ..+..++..+.-++........+ ..-..+..++..+++.+..+++.-+.|.+.++...++
T Consensus 1236 lip~l~el~R~sVgl----~Tkvg~A~fI~~L~~r~~~emtP-~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1236 LIPRLTELVRGSVGL----GTKVGCASFISLLVQRLGSEMTP-YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred HHHHHHHHHhccCCC----CcchhHHHHHHHHHHHhccccCc-chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence 333333333222211 22233333333333211000000 0112456677777788999999999999999988778
Q ss_pred HHHHHHHH
Q 004225 666 EQIKYLVR 673 (767)
Q Consensus 666 ~~~~~l~~ 673 (767)
++.+.+++
T Consensus 1311 dq~qKLie 1318 (1702)
T KOG0915|consen 1311 DQMQKLIE 1318 (1702)
T ss_pred HHHHHHHH
Confidence 88887654
No 167
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.34 Score=54.21 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=126.7
Q ss_pred hcCCCHHHHHHHHHHHHHhc-CC-ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHH
Q 004225 368 VWSDDSGLQLEATTWFRKLL-LP-PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFV 444 (767)
Q Consensus 368 l~s~~~~~~~~a~~~L~~l~-~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~ 444 (767)
+.+.+...+..|++.+-.-. .. +... ..+.+++...+.+ .++++..---|.+++. .....+. +++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmss-----Lf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL---avNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSS-----LFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL---AVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHH-----HHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH---HHHHHH
Confidence 66777888888887766544 22 2222 3566677777666 8999988888888888 3333332 578888
Q ss_pred HhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchH
Q 004225 445 KLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPAL 524 (767)
Q Consensus 445 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i 524 (767)
+=+.++|+.+|..|+.+++.+-. ++.. ..+++++.+.+ .++++.||+.|+.++.++-+-+ .+.....|.+
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~--~el~-----~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~ 168 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRV--KELL-----GNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHELGLI 168 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHH
Confidence 88999999999999999997763 2222 22678888889 9999999999999999998664 3445556788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 525 PALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 525 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
..+..++.++|+.+..+|+.++..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 8888899999999999999999998765
No 168
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.20 E-value=0.00019 Score=65.38 Aligned_cols=108 Identities=19% Similarity=0.303 Sum_probs=45.9
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhccccc-CCCCccceeeccccccccccc
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNI-VMFPQLQYLKMSDLEKFTSFC 82 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~ 82 (767)
.+.+|+.|++++|. ++.+.. ++.+++|+.|+++++. ++.+ .+.+ ..+|+|++|++.+. ++.++.
T Consensus 40 ~l~~L~~L~Ls~N~-I~~l~~---l~~L~~L~~L~L~~N~-I~~i---------~~~l~~~lp~L~~L~L~~N-~I~~l~ 104 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQ-ITKLEG---LPGLPRLKTLDLSNNR-ISSI---------SEGLDKNLPNLQELYLSNN-KISDLN 104 (175)
T ss_dssp T-TT--EEE-TTS---S--TT-------TT--EEE--SS----S----------CHHHHHH-TT--EEE-TTS----SCC
T ss_pred hhcCCCEEECCCCC-CccccC---ccChhhhhhcccCCCC-CCcc---------ccchHHhCCcCCEEECcCC-cCCChH
Confidence 47789999999984 565532 3578999999999875 5544 1112 24899999999873 344433
Q ss_pred CCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeC
Q 004225 83 TGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVD 127 (767)
Q Consensus 83 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~ 127 (767)
... ....+++|+.|++.++|......--.+....+|+|+.||-.
T Consensus 105 ~l~-~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 105 ELE-PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp CCG-GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HhH-HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 211 14579999999999988553321111222468999999654
No 169
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.19 E-value=0.0018 Score=52.37 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=68.2
Q ss_pred hHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC
Q 004225 607 AKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686 (767)
Q Consensus 607 ~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~ 686 (767)
|+.++.++..++.+-.......++ .++++++..+.+++..||..|+.+|.|++.....+.... -..++..|.++..+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~--f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY--FNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcC
Confidence 556667777666644444444444 489999999999999999999999999997633222222 14588899999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 004225 687 ADPEIVTICLKGLENILK 704 (767)
Q Consensus 687 ~~~~v~~~al~aL~~l~~ 704 (767)
.++.|+..| +.|-++++
T Consensus 80 ~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CchhHHHHH-HHHHHHhc
Confidence 999987666 66666653
No 170
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.19 E-value=5.1e-05 Score=75.14 Aligned_cols=111 Identities=13% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCCCC-CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccccccc
Q 004225 2 SCGIQ-NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTS 80 (767)
Q Consensus 2 ~~~l~-~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 80 (767)
|..+| .-+.++|... .++.+ |.+.++.+++|+.||++.+. ++.+- +....++++|-+|-+.+-.++++
T Consensus 62 P~~LP~~tveirLdqN-~I~~i-P~~aF~~l~~LRrLdLS~N~-Is~I~--------p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQN-QISSI-PPGAFKTLHRLRRLDLSKNN-ISFIA--------PDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cccCCCcceEEEeccC-CcccC-Chhhccchhhhceecccccc-hhhcC--------hHhhhhhHhhhHHHhhcCCchhh
Confidence 33443 3566777764 57888 55567899999999998874 66541 23445577888888888778888
Q ss_pred ccCCCCcccCCCCccEEEeccCC--cccccccccccccccCCCceeeeCCcc
Q 004225 81 FCTGDLDILEFPSLKELRISKCP--EFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~l~~c~--~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
++.+. ...+.+|+.|.+.-|. .+.. ..+ ..+++|..|.+.++.
T Consensus 131 l~k~~--F~gL~slqrLllNan~i~Cir~---~al--~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 131 LPKGA--FGGLSSLQRLLLNANHINCIRQ---DAL--RDLPSLSLLSLYDNK 175 (498)
T ss_pred hhhhH--hhhHHHHHHHhcChhhhcchhH---HHH--HHhhhcchhcccchh
Confidence 88765 3456777777665332 1111 112 257777777777653
No 171
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.18 E-value=0.00071 Score=49.94 Aligned_cols=59 Identities=25% Similarity=0.434 Sum_probs=28.4
Q ss_pred CccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCc
Q 004225 65 PQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAK 129 (767)
Q Consensus 65 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 129 (767)
|+|++|++.++ +++.++... ...+++|++|+++++. +....+..|. .+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~--f~~l~~L~~L~l~~N~-l~~i~~~~f~--~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDS--FSNLPNLETLDLSNNN-LTSIPPDAFS--NLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTT--TTTGTTESEEEETSSS-ESEEETTTTT--TSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHH--HcCCCCCCEeEccCCc-cCccCHHHHc--CCCCCCEEeCcCC
Confidence 34555555554 444444332 2345566666665432 2333333332 4566666666554
No 172
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.018 Score=64.79 Aligned_cols=245 Identities=14% Similarity=0.116 Sum_probs=156.1
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCc
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPF 517 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 517 (767)
.++..|...+++.|..++-.|+..++.++...|. . + ...++...+.++...++...-..++-+++.++... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~-L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--E-L-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--H-H-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 4677888889999999999999999999987772 1 2 22366777777755556777789999999999775 1122
Q ss_pred cchhchHHHHHHHhc--------CCCHHHHHHHHHHHHhhccCChh-HHHHHHhcCcHHHHHHHhcCCCCCCcccchHHH
Q 004225 518 DQVRPALPALAQLVH--------SNDNDVLRYACEALSCLSDGTND-KIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLW 588 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~--------~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~ 588 (767)
.....++|.++.-+. +....||.+||.+++.+++.... ..+-+...=.-..+...+-+.+. .++..|..
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrev--ncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREV--NCRRAASA 493 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchh--hHhHHHHH
Confidence 334567777776664 23367899999999888866432 22223322233445556667777 78888888
Q ss_pred HHhhhhccCCcceeeh-----------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh-----cCCchhHHHH
Q 004225 589 TVRYIVKGDGFLTQCT-----------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ-----NAEFFTKKEA 652 (767)
Q Consensus 589 ~L~~l~~~~~~~~~~l-----------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a 652 (767)
++.-......+...-+ ..+.+....+..-.+..+. ....+++-+- +=+..+|..+
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~---------y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSG---------YREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhh---------HHHHHHHHHHhcccccccHHHHHHH
Confidence 8776664322221111 1222222222222223232 3334444332 2367899999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 004225 653 ARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENIL 703 (767)
Q Consensus 653 ~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~ 703 (767)
+++|.+++.. .++. ...+.++++++...+++...+.-+.-|...++
T Consensus 565 a~aL~~Ls~~-~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 565 AYALHKLSLT-EPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHHHHh-hHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 9999998765 3332 44568888888888888877776555554444
No 173
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.02 Score=57.98 Aligned_cols=218 Identities=14% Similarity=0.173 Sum_probs=156.6
Q ss_pred HHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc-------CCC-----hHHHHhcCchHHHHhhccCCCCHHHHH-----
Q 004225 355 IQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL-------LPP-----SEKVIQSGVVARFVEFLTREDNPQLQL----- 417 (767)
Q Consensus 355 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~-------~~~-----~~~i~~~g~i~~L~~ll~~~~~~~~~~----- 417 (767)
..++++++.++++|..++.++....+..|+.+. +.. .+++++.++++.|++.+..=+ ..++.
T Consensus 121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLd-Esvkeea~gv 199 (536)
T KOG2734|consen 121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLD-ESVKEEADGV 199 (536)
T ss_pred HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhh-hcchhhhhhh
Confidence 556788999999999999999999999999998 111 466788899999999887544 33333
Q ss_pred -HHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-
Q 004225 418 -EAARALTNIAS---ENTNVVIDGGAVPIFVKLLSS--PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN- 490 (767)
Q Consensus 418 -~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~- 490 (767)
.+...+-|+.. +....+++.|.+..|+.-+.. +-......|..++.-+..++.+.+...-.-+++..+++.+.
T Consensus 200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 34555666666 556677777877777764433 44556677888888888777777777777789999998884
Q ss_pred ---cC----CChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh--hHHHHHH
Q 004225 491 ---KH----AKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTN--DKIQAVI 561 (767)
Q Consensus 491 ---~~----~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~ 561 (767)
++ ...++.++.-.+|+.+.....+........++....-+++. ....+..++.+|-....+.+ ++...++
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfV 358 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFV 358 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHH
Confidence 12 24577888888898888887777666666666655444444 45567778888888887765 5666677
Q ss_pred hcCcHHHHHHHhc
Q 004225 562 EADVCPRLVKLLL 574 (767)
Q Consensus 562 ~~~~~~~L~~lL~ 574 (767)
+..+...+..+.-
T Consensus 359 e~lGLrtiF~~FM 371 (536)
T KOG2734|consen 359 EILGLRTIFPLFM 371 (536)
T ss_pred HHHhHHHHHHHHh
Confidence 6655555554443
No 174
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.08 Score=62.01 Aligned_cols=314 Identities=17% Similarity=0.180 Sum_probs=177.8
Q ss_pred CHHHHHHHHHHHHHhcCCChHHH--HhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhh---HHHHhCCChHHHHHh
Q 004225 372 DSGLQLEATTWFRKLLLPPSEKV--IQSGVVARFVEFLTREDNPQLQLEAARALTNIASENT---NVVIDGGAVPIFVKL 446 (767)
Q Consensus 372 ~~~~~~~a~~~L~~l~~~~~~~i--~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~l~~L~~l 446 (767)
....+.-|+.-+..++..-.+.+ .-..+||.|..+=-+++ +.+|..-..++..+..+.+ +... ..++.-|+.-
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~ 1047 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVN 1047 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHh
Confidence 34455566666666661111111 12246888888878888 8888866666665555222 2222 2355667777
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc--CCHHHHHHHHccCCChHHHHHH---HHHHHhhcCCC-CCCCccch
Q 004225 447 LSSPSDDVREKAVWALGNIARSSPRDRDLVLSE--KALIPLLAQLNKHAKPSMLRNA---TKTLSRFCQGK-PEPPFDQV 520 (767)
Q Consensus 447 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~~~---~~~L~~l~~~~-~~~~~~~~ 520 (767)
+.+....+|+.++-+|..+..+.+.. .+.+. .....+...+ ++-...+|++| +.+++.++... ........
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 77888999999999999999765532 22221 1333334444 55566777774 44555555432 11222222
Q ss_pred hchHHHHHHHhc-----CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhc
Q 004225 521 RPALPALAQLVH-----SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 521 ~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~ 595 (767)
..++..++.++- ++-+++++.++.++..++........... ...+|.++.....-.+ . .|.+++.
T Consensus 1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~--~-------vLnYls~ 1194 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEP--Q-------VLNYLSL 1194 (1702)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccch--H-------HHHHHHH
Confidence 333333333332 55699999999999999987665443222 2356666666655544 2 2222222
Q ss_pred cCCcceeehhhhHHHHHHHhhhccCCHHHHH---HHH-------HcCCHHHHHHHHhcC-CchhHHHHHHHHHHhhcCCC
Q 004225 596 GDGFLTQCTGIAKEACRTISNITAGNREQIQ---VVI-------DAGVIGPLVDLLQNA-EFFTKKEAARAISNAISGGT 664 (767)
Q Consensus 596 ~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~---~~~-------~~~~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~ 664 (767)
... ++..+|+..+..-++.+....+ ..+ =...+|.+.++++.+ .-..|..++..+.-++....
T Consensus 1195 r~~------~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~ 1268 (1702)
T KOG0915|consen 1195 RLI------NIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG 1268 (1702)
T ss_pred hhh------hhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc
Confidence 211 3445555554433322111111 111 124678888888865 34566666666666664322
Q ss_pred HHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhh
Q 004225 665 HEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 665 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 708 (767)
.+...+ .-..+..++-.+++.++.++..-..|...++.....
T Consensus 1269 ~emtP~--sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1269 SEMTPY--SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred cccCcc--hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence 222111 112466777778899999999999999988876443
No 175
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.05 E-value=0.01 Score=48.13 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHH
Q 004225 648 TKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVE 727 (767)
Q Consensus 648 v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 727 (767)
.|+.+..+|+.++...... +.... ..++++++..+.++++.||..|+.+|+++++.....- ...
T Consensus 2 ~R~ggli~Laa~ai~l~~~-~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~------------l~~-- 65 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-ISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI------------LPY-- 65 (97)
T ss_pred chhHHHHHHHHHHHHchHh-HHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH------------HHH--
Confidence 3566777788776653333 33322 3489999999999999999999999999998654321 111
Q ss_pred hhchHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 004225 728 AAEGFKKIEDLKRHDSNGICEKAVKILEIYW 758 (767)
Q Consensus 728 ~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 758 (767)
-...++.|.++..+++++|+..| ++|.+.+
T Consensus 66 f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 66 FNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 23447888999999999999655 6666654
No 176
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.97 E-value=0.058 Score=59.69 Aligned_cols=223 Identities=16% Similarity=0.133 Sum_probs=146.5
Q ss_pred cCCCHHHHHHHHHHHHHhcCC--ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHh
Q 004225 369 WSDDSGLQLEATTWFRKLLLP--PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKL 446 (767)
Q Consensus 369 ~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~l 446 (767)
.++.|.....|...+.++++. ....+. .-.+...+..+.-+..+-++..|++++.-.++...-.-...+++..|.++
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~ql 538 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQL 538 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHH
Confidence 356677777888888877721 111111 12344455555544447788888888877776111112234667788888
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCCCCCCccchhchHH
Q 004225 447 LSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALP 525 (767)
Q Consensus 447 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~ 525 (767)
......++-...+.+|+..+..+++..... +..+.+..+.++. .++|+.+...+-.++-.+++.. .+.--.....+|
T Consensus 539 as~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e~~iP 616 (1005)
T KOG2274|consen 539 ASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQERLIP 616 (1005)
T ss_pred cccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHHHHHH
Confidence 887888888889999999999888876533 5557777777764 5677777777777777777632 333345567899
Q ss_pred HHHHHhcCCC----HHHHHHHHHHHHhhccCChh-HHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhcc
Q 004225 526 ALAQLVHSND----NDVLRYACEALSCLSDGTND-KIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKG 596 (767)
Q Consensus 526 ~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~ 596 (767)
.+++.++.++ .....-++..|..+.++.+. ..+.+.. -++|.+.+..-+.+. .+...++..|++.+...
T Consensus 617 slisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD-~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDD-HETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCC-hHHHHhHHHHHHHHHhc
Confidence 9999998665 56666677777766666543 3333332 467777777655443 27888888888887654
No 177
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.94 E-value=0.002 Score=42.87 Aligned_cols=39 Identities=49% Similarity=0.509 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhc
Q 004225 623 EQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 623 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~ 661 (767)
+....+++.|+++.|++++.+++.+++..|+|+|.|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 466778899999999999999999999999999999863
No 178
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.92 E-value=0.0024 Score=42.50 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=35.1
Q ss_pred hhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcC
Q 004225 471 RDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 471 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 510 (767)
+.+..+.+.|+++.+++++ .+++.++++.++|+|+|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll-~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELL-KSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHcC
Confidence 4677888999999999999 68899999999999999873
No 179
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.00027 Score=67.40 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=34.4
Q ss_pred CCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 64 FPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
...++.+++.+. .+.+|....--..++|.|+.|+++. ..+...+.+.. ....+|+.|.+.++.
T Consensus 70 ~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp--~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 70 VTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLP--LPLKNLRVLVLNGTG 132 (418)
T ss_pred hhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccC-CcCCCccccCc--ccccceEEEEEcCCC
Confidence 456677777652 2333321100035688888888864 34433332211 245688888888765
No 180
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.04 Score=59.97 Aligned_cols=269 Identities=12% Similarity=0.108 Sum_probs=144.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCCh
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAV 440 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l 440 (767)
+|-+=..+++....+..+|+.++..+.....+.+.. .+..|--++.++. ...|..|.++|.++|..+...+...+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~cN-- 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTVCN-- 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCccccccc--
Confidence 344445556666677777777777766333333322 4455555566666 67777777777777762222222111
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccch
Q 004225 441 PIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQV 520 (767)
Q Consensus 441 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 520 (767)
.-|-.++.+.+..+...|+.+|-. .++....+.++ ..+..++ .+-+.+.+..++.++..+|..-|. ..
T Consensus 322 ~elE~lItd~NrsIat~AITtLLK--TG~e~sv~rLm-----~qI~~fv-~disDeFKivvvdai~sLc~~fp~----k~ 389 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLK--TGTESSVDRLM-----KQISSFV-SDISDEFKIVVVDAIRSLCLKFPR----KH 389 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHH--hcchhHHHHHH-----HHHHHHH-HhccccceEEeHHHHHHHHhhccH----HH
Confidence 223334444444443333333322 22222222222 1122222 222333333344444444433222 22
Q ss_pred hchHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccC--
Q 004225 521 RPALPALAQLVHS-NDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGD-- 597 (767)
Q Consensus 521 ~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~-- 597 (767)
.+.++.|..+|.+ +.-+.+.+...++..+....++.... ++..|...+.+.. ...-+.+++.-+....
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce----~~~i~~rILhlLG~EgP~ 460 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCE----FTQIAVRILHLLGKEGPK 460 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhcc----chHHHHHHHHHHhccCCC
Confidence 3456666666654 34677788888888877765544432 4455666665553 2344555555554322
Q ss_pred -Ccceeeh------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhh
Q 004225 598 -GFLTQCT------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAI 660 (767)
Q Consensus 598 -~~~~~~l------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~ 660 (767)
....+++ .+|.+|..++.++.++++.... .+...+.+.+.+.+.++|..|..++.++-
T Consensus 461 a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 461 APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 2222222 6788888889888865443332 35566778888999999999999999877
No 181
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.13 Score=56.31 Aligned_cols=266 Identities=16% Similarity=0.118 Sum_probs=133.3
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhH--------H
Q 004225 403 FVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR--------D 474 (767)
Q Consensus 403 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--------~ 474 (767)
+=..+.+.. ..+..+|++++..+.....+.+. .++..|-.+++++...+|..|..+|..+|...|... .
T Consensus 250 l~s~l~~K~-emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 250 LESCLRHKS-EMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHHHhchh-HHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 334556666 78899999998888773333333 277888889999999999999999999997655421 1
Q ss_pred HHHhcC---CHHHHHHHHccCCChHH----HHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 004225 475 LVLSEK---ALIPLLAQLNKHAKPSM----LRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALS 547 (767)
Q Consensus 475 ~~~~~g---~i~~L~~ll~~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 547 (767)
.+-+.+ +..++..++ +.+.... ........++++.+. .+..-.++..|.... +.-..-.+..|.
T Consensus 327 lItd~NrsIat~AITtLL-KTG~e~sv~rLm~qI~~fv~disDeF----Kivvvdai~sLc~~f----p~k~~~~m~FL~ 397 (865)
T KOG1078|consen 327 LITDSNRSIATLAITTLL-KTGTESSVDRLMKQISSFVSDISDEF----KIVVVDAIRSLCLKF----PRKHTVMMNFLS 397 (865)
T ss_pred hhcccccchhHHHHHHHH-HhcchhHHHHHHHHHHHHHHhccccc----eEEeHHHHHHHHhhc----cHHHHHHHHHHH
Confidence 111111 122222223 2222222 222222222222221 111112222222211 111111222223
Q ss_pred hhccC--ChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHH
Q 004225 548 CLSDG--TNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQI 625 (767)
Q Consensus 548 ~l~~~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~ 625 (767)
++... .-+.... ++..++..+.... +-+..++.-|.-..... +...-+.+++.-+....+...
T Consensus 398 ~~Lr~eGg~e~K~a-----ivd~Ii~iie~~p---dsKe~~L~~LCefIEDc-------e~~~i~~rILhlLG~EgP~a~ 462 (865)
T KOG1078|consen 398 NMLREEGGFEFKRA-----IVDAIIDIIEENP---DSKERGLEHLCEFIEDC-------EFTQIAVRILHLLGKEGPKAP 462 (865)
T ss_pred HHHHhccCchHHHH-----HHHHHHHHHHhCc---chhhHHHHHHHHHHHhc-------cchHHHHHHHHHHhccCCCCC
Confidence 32222 1112222 2333444333222 22233333332222111 223334444443333211100
Q ss_pred HHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 626 QVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 626 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
.....+..+.+...-.+..+|.+|..++.++... ++. ....+.-.|.+++.+.|.++|.+|..++..+-.
T Consensus 463 ---~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~-~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 463 ---NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ-DVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred ---CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-CCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 0122344455555556889999999999999854 222 222366678889999999999999999998884
No 182
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.70 E-value=0.3 Score=49.83 Aligned_cols=197 Identities=12% Similarity=0.112 Sum_probs=135.6
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhH-----HHHHHh--cCcHHHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 521 RPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDK-----IQAVIE--ADVCPRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 521 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~--~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
.+.+..|+..+..-+-+.+.++..+..++.+...+. ...+.. ..++..|+..-.+++ +..
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d----ial--------- 141 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD----IAL--------- 141 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT----THH---------
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc----ccc---------
Confidence 468888999999999999999999999998664322 222322 123333333333322 222
Q ss_pred hccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 004225 594 VKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR 673 (767)
Q Consensus 594 ~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~ 673 (767)
.+-.++.. +...+...+.++....+..+++..+.++.++...|..++..+...+ +......+.
T Consensus 142 ---------------~~g~mlRe-c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~ 204 (335)
T PF08569_consen 142 ---------------NCGDMLRE-CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLS 204 (335)
T ss_dssp ---------------HHHHHHHH-HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHH
T ss_pred ---------------hHHHHHHH-HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 22222222 2334666777888889999999999999999999999999987763 444444444
Q ss_pred ---cCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHH
Q 004225 674 ---KGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKA 750 (767)
Q Consensus 674 ---~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a 750 (767)
..++.....++.++|.-++.+++..|..++....+.. ...+.+....-+..+..++.+++..++-.|
T Consensus 205 ~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eA 274 (335)
T PF08569_consen 205 NNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEA 274 (335)
T ss_dssp HTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHH
Confidence 2567788889999999999999999999998655432 235566666778888899999999999999
Q ss_pred HHHHHHh
Q 004225 751 VKILEIY 757 (767)
Q Consensus 751 ~~~l~~~ 757 (767)
-++..-|
T Consensus 275 FhvFKvF 281 (335)
T PF08569_consen 275 FHVFKVF 281 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887655
No 183
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.84 Score=49.89 Aligned_cols=152 Identities=15% Similarity=0.062 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhhhhHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHHhc--CCchhHHHHHhcCCHHHHHH
Q 004225 418 EAARALTNIASENTNVVIDGGAVPIFVKLLSS--------PSDDVREKAVWALGNIAR--SSPRDRDLVLSEKALIPLLA 487 (767)
Q Consensus 418 ~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~g~i~~L~~ 487 (767)
+|+..+..+....++. --.|+++.++..|.. +++.-.+.|...++++.+ ..+....-+++.-++..++.
T Consensus 389 aal~fl~~~~sKrke~-TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P 467 (970)
T COG5656 389 AALFFLIISKSKRKEE-TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIP 467 (970)
T ss_pred HHHHHHHHHhcccchh-hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhH
Confidence 3444444444422222 224889999998832 234445667777777664 22222233445556777777
Q ss_pred HHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHH
Q 004225 488 QLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCP 567 (767)
Q Consensus 488 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 567 (767)
.+ +++.--++..++..++.+..+ ..+......+.+...+.+++++-.++..|+-++.-+..+. +....+.+.+.+
T Consensus 468 ~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~ 542 (970)
T COG5656 468 AF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPE 542 (970)
T ss_pred hh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhH
Confidence 77 788888999999999999443 4455556667777888888888889999999988887664 223333444555
Q ss_pred HHHHHhcC
Q 004225 568 RLVKLLLH 575 (767)
Q Consensus 568 ~L~~lL~~ 575 (767)
.+-++|.-
T Consensus 543 tmekLLsL 550 (970)
T COG5656 543 TMEKLLSL 550 (970)
T ss_pred HHHHHHHh
Confidence 55555543
No 184
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.58 E-value=0.049 Score=48.03 Aligned_cols=128 Identities=14% Similarity=0.147 Sum_probs=95.8
Q ss_pred chhchHHHHHHHhcCCC------HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhh
Q 004225 519 QVRPALPALAQLVHSND------NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRY 592 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~ 592 (767)
...++++.|++++.++. .++...++.++..+.+++.-..+ ..+..++.+++.++.......
T Consensus 8 I~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~------------ 74 (160)
T PF11841_consen 8 ISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDA------------ 74 (160)
T ss_pred HhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccc------------
Confidence 34578899999998665 48888999999999988643443 444568888888887654211
Q ss_pred hhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHH
Q 004225 593 IVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYL 671 (767)
Q Consensus 593 l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l 671 (767)
.+...|..++-+++..++...+.+.+.=-++.|+..++.++++++.+|...+..+...+++..++.+
T Consensus 75 ------------~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 75 ------------SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred ------------hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 5566666666677777677666666666799999999999999999999988888887666655543
No 185
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.58 E-value=0.18 Score=51.08 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=118.6
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc--hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC--ChhHHH
Q 004225 483 IPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ--VRPALPALAQLVHSNDNDVLRYACEALSCLSDG--TNDKIQ 558 (767)
Q Consensus 483 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~ 558 (767)
...+..+ .......|+.++..+.++........+.. ...+++.+.+.++....+-+..|+.++.-++-. ......
T Consensus 46 ~~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3444555 56678899999999999887653333332 245677888888877766677777777776644 223334
Q ss_pred HHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHH
Q 004225 559 AVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLV 638 (767)
Q Consensus 559 ~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~ 638 (767)
.+++ .+.|.|...+.+......++..++.+|+.++. ++....+.....++ .+..+.
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~f---------------------v~~~d~~~~~~~~~--~le~if 180 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTF---------------------VGGSDEEETEELME--SLESIF 180 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHH---------------------hhcCChhHHHHHHH--HHHHHH
Confidence 4444 57889999988876512333444444444431 11111222221111 111111
Q ss_pred H--HHh----------cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 639 D--LLQ----------NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 639 ~--ll~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
. ..+ .+++.+...|..+-+-+....+...+....+ ..++.|..+|.+.+.+||.+|-.+|.-+.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 181 LLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 1 111 1234577777666565655444444444333 36899999999999999999999999988765
Q ss_pred h
Q 004225 707 E 707 (767)
Q Consensus 707 ~ 707 (767)
.
T Consensus 260 ~ 260 (309)
T PF05004_consen 260 R 260 (309)
T ss_pred h
Confidence 5
No 186
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.37 Score=52.40 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=74.4
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh-cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhh
Q 004225 605 GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ-NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDL 683 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~l 683 (767)
+|++.|+-+|+-++..+++. .+..+++|. +-++.||.-|+.+|+-.+.+..... ++..|-.+
T Consensus 570 DVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl 632 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPL 632 (929)
T ss_pred HHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhh
Confidence 67777777777666666553 345555555 5689999999999998877532221 34455556
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHH
Q 004225 684 LLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEK 749 (767)
Q Consensus 684 l~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 749 (767)
.+++..-||+.|+-++.-++........ +-. .|+.+.+.+...+++++.-.+
T Consensus 633 ~~D~~~fVRQgAlIa~amIm~Q~t~~~~---------pkv-----~~frk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 633 TSDPVDFVRQGALIALAMIMIQQTEQLC---------PKV-----NGFRKQLEKVINDKHEDGMAK 684 (929)
T ss_pred hcChHHHHHHHHHHHHHHHHHhcccccC---------chH-----HHHHHHHHHHhhhhhhHHHHH
Confidence 6788888999999999988864433221 112 233556677777777665433
No 187
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.00035 Score=63.04 Aligned_cols=72 Identities=15% Similarity=0.293 Sum_probs=41.2
Q ss_pred CCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccc
Q 004225 220 STSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSF 298 (767)
Q Consensus 220 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 298 (767)
...+++++.|.+.+|..+.+.....+.+-.++|+.|+|++|+.+++....-.. .|++|+.|.+.++|.....
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-------~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-------KLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-------HhhhhHHHHhcCchhhhch
Confidence 34556666777777776666644444444566666666666666554332211 1566666666665544433
No 188
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.12 Score=56.74 Aligned_cols=203 Identities=14% Similarity=0.051 Sum_probs=132.5
Q ss_pred hhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCC-HHHHHHHHHHHHhh
Q 004225 471 RDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSND-NDVLRYACEALSCL 549 (767)
Q Consensus 471 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l 549 (767)
.-+...++.|+...++.+. ....+..+.....+|. + .-..........++.+.+.++... .--...++.++.|+
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~--~--~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALA--G--KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred HhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHh--h--hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 3445677889999999998 5566677777777777 1 111111222344555555544332 22345678889999
Q ss_pred ccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHH
Q 004225 550 SDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVI 629 (767)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~ 629 (767)
+..++...+.+.+....+.+-.++...++ ..+..++..+.|+ .-++.-....+.
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~--~lqraa~e~~~NL------------------------l~~~~~~e~si~ 623 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENP--ALQRAALESIINL------------------------LWSPLLYERSIV 623 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccH--HHHHHHHHHHHHH------------------------HhhHHHHHHHhh
Confidence 98887777778777777887888888887 5555555555555 443333333344
Q ss_pred H-cCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHH-HHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 630 D-AGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIK-YLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 630 ~-~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
+ ..-.+.....+.........+++.++..++.. +..++. ..........+..++.+.+++++...+..+.++...
T Consensus 624 e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv-~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 624 EYKDRLKLWNLNLEVADEKFELAGAGALAAITSV-VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred ccccCchHHHHHHHhhhhHHhhhccccccchhhc-chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 4 33456666666666777777777777766654 445554 333356788999999999999999999999996553
No 189
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.47 E-value=0.14 Score=45.21 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=96.6
Q ss_pred hHHHHHhcCCHHHHHHHHccCC-----ChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCC--CHHHHHHHHH
Q 004225 472 DRDLVLSEKALIPLLAQLNKHA-----KPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSN--DNDVLRYACE 544 (767)
Q Consensus 472 ~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~ 544 (767)
+...++..|++..+++++.+.. ..++...++.++..+-..+...-......++..++..++.. |..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3456788999999999995333 24778889999999888764333455566777777777633 6899999999
Q ss_pred HHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 545 ALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 545 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
+|-++...++.....+.+.=-++.++..|+..+. +++.+|+..+..+....+
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~--~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQ--EIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCH--HHHHHHHHHHHHHHhcCC
Confidence 9999999888877777776679999999999988 888888887777764443
No 190
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.46 Score=54.78 Aligned_cols=228 Identities=15% Similarity=0.088 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc---cCCChHHHHHHHHHHHhhcCCCCCCCccchhchHH
Q 004225 449 SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN---KHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALP 525 (767)
Q Consensus 449 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~ 525 (767)
+.+..+|..+-.+|..++.. +....... ..+..+.+.+. ++.+...+...+.++..+....+..........||
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~--q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVE--QRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHH--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35789999999999999976 32222111 12333333332 55667788888888888877765444455555666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccC------ChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCc
Q 004225 526 ALAQLVHSNDNDVLRYACEALSCLSDG------TNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGF 599 (767)
Q Consensus 526 ~L~~ll~~~~~~v~~~a~~~L~~l~~~------~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~ 599 (767)
-++-.+++.+...++.+..+|..++.. ..+.....++ .++..+...+-.... . ..|
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ln-efl~~Isagl~gd~~--~--~~a------------- 803 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILN-EFLSIISAGLVGDST--R--VVA------------- 803 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHH-HHHHHHHhhhcccHH--H--HHH-------------
Confidence 555555888888999999998888731 1111111111 233333333222222 1 111
Q ss_pred ceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH
Q 004225 600 LTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKP 679 (767)
Q Consensus 600 ~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~ 679 (767)
..+.++..+..........-.-.++++.+.-++.+.+.++++.|+.++..++............ ..+++.
T Consensus 804 ---------s~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~s 873 (1176)
T KOG1248|consen 804 ---------SDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPS 873 (1176)
T ss_pred ---------HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHH
Confidence 1122222222221111111122346677778888999999999999999999875544444333 337888
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 004225 680 LCDLLLYADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 680 L~~ll~~~~~~v~~~al~aL~~l~~~~~ 707 (767)
+..+.++....++.++...+..+++.-.
T Consensus 874 ll~ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 874 LLALSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 8899999999999999999999988543
No 191
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.39 E-value=0.22 Score=53.82 Aligned_cols=305 Identities=15% Similarity=0.164 Sum_probs=153.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
...++...+ ++...+.-|+..+.++. .-+. .....+..+++++.+++ ..+|.+|+..|-.++.++.+.+- .+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~---l~~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~--kv 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPD---LQEEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVS--KV 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GG---GHHHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HH--HH
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHh--HH
Confidence 445566665 46889999999999988 2221 12235788999999999 99999999999999983222221 23
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc--cCCChHHHHHHHHHHHhhcCC-CCC-C
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN--KHAKPSMLRNATKTLSRFCQG-KPE-P 515 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~~~~~~L~~l~~~-~~~-~ 515 (767)
...|+++|.++++.....+-.+|..+...++.. .+..++..+. ..++..+|+.++..|..-... .+. .
T Consensus 98 aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~ 169 (556)
T PF05918_consen 98 ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELL 169 (556)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHh
Confidence 578999999988877777888888777544432 3455565552 256788999999887543322 211 1
Q ss_pred C--ccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC----ChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHH
Q 004225 516 P--FDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG----TNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWT 589 (767)
Q Consensus 516 ~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~ 589 (767)
. .....-++..+..+|++-..+-....+.+|..+-.. .....+. +++.+.+...-..+....-...+.
T Consensus 170 ~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~sD~e~Id- 243 (556)
T PF05918_consen 170 TPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPSDPESID- 243 (556)
T ss_dssp ---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SSSHHHHH-
T ss_pred hchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCcCHHHHH-
Confidence 1 233344555666777654555555666677766652 2222222 233333322111100000000000
Q ss_pred HhhhhccCCcceeehhhhHHHHHHHhhhcc--CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHH
Q 004225 590 VRYIVKGDGFLTQCTGIAKEACRTISNITA--GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ 667 (767)
Q Consensus 590 L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 667 (767)
.+....-.++--... .+.....++.+ .++|.+-.+ ..+.|.....+++.++.......
T Consensus 244 ---------------rli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d 303 (556)
T PF05918_consen 244 ---------------RLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD 303 (556)
T ss_dssp ---------------HHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----T
T ss_pred ---------------HHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc
Confidence 111111122221222 23444444444 466655555 45677788888888887654333
Q ss_pred HHHHHHcCChHHHHhhhcCC--CH----HHHHHHHHHHHHHHHhhh
Q 004225 668 IKYLVRKGCIKPLCDLLLYA--DP----EIVTICLKGLENILKVGE 707 (767)
Q Consensus 668 ~~~l~~~~~i~~L~~ll~~~--~~----~v~~~al~aL~~l~~~~~ 707 (767)
...++.. ++..|...+... .+ ..++..+.++..+.....
T Consensus 304 ~~~~L~~-i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p 348 (556)
T PF05918_consen 304 ARQLLPS-IFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP 348 (556)
T ss_dssp HHHHHHH-HHHHHHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHH-HHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence 4443321 344444444322 23 456667777777776543
No 192
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.36 E-value=0.14 Score=48.98 Aligned_cols=205 Identities=13% Similarity=0.074 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHhhccCChhHHHHHHhc-CcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhh-HHHHH
Q 004225 535 DNDVLRYACEALSCLSDGTNDKIQAVIEA-DVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIA-KEACR 612 (767)
Q Consensus 535 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~-~~a~~ 612 (767)
+++.|+.|+.-|+.--+..++....+..+ |.+..+++-+-+.-+ .+..+.+ .....-| ..|+.
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp--~l~~~~L-------------t~~~snRVcnaLa 72 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYP--ALSPPNL-------------TARQSNRVCNALA 72 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGG--GTTTT----------------HHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcc--cCCCccc-------------CHHHHHHHHHHHH
Confidence 56778888888887766666655555543 555555544433222 1111100 0000112 23333
Q ss_pred HHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCC-----chhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC
Q 004225 613 TISNITAGNREQIQVVIDAGVIGPLVDLLQNAE-----FFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA 687 (767)
Q Consensus 613 ~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 687 (767)
.+..++. .++.+..++++++.-.|...++..+ ..+|-.+..+++.++...+++.+.++++.++++...+.++.+
T Consensus 73 LlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G 151 (262)
T PF04078_consen 73 LLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG 151 (262)
T ss_dssp HHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS
T ss_pred HHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc
Confidence 3444444 5677888999988777777777543 368999999999999988999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 004225 688 DPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSC 760 (767)
Q Consensus 688 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 760 (767)
+.--+..|...+..++.+.....-..+ ..+.+.+.. .-.-..+.++..++++++-+..+.+..+..+.
T Consensus 152 selSKtvAtfIlqKIL~dd~GL~yiC~---t~eRf~av~--~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 152 SELSKTVATFILQKILLDDVGLNYICQ---TAERFFAVA--MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp -HHHHHHHHHHHHHHHHSHHHHHHHTS---SHHHHHHHH--HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHcchhHHHHHhc---CHHHHHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 988899999999999986554433222 122222221 12234455667888888777766666555443
No 193
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.24 E-value=0.026 Score=45.71 Aligned_cols=64 Identities=19% Similarity=0.440 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 004225 415 LQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLL--SSPSDDVREKAVWALGNIARSSPRDRDLVLS 478 (767)
Q Consensus 415 ~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 478 (767)
.+...++++++++. ..++.+.+.|++|.++... +..+|-+++.|++++.|++.++++.++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35667888999998 7788899999999999864 4478999999999999999999998776643
No 194
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.23 E-value=0.12 Score=56.85 Aligned_cols=240 Identities=15% Similarity=0.064 Sum_probs=151.5
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHh
Q 004225 429 ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALG-NIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSR 507 (767)
Q Consensus 429 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 507 (767)
.-+...++.|+...|.++.....+..+..+..+|. .+...+. + ....++++.+.+..+....-.-.++.++.|
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 34556778899999999988888888888888887 3332221 1 122566666666222211222337888999
Q ss_pred hcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHh-cCcHHHHHHHhcCCCCCCcccch
Q 004225 508 FCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIE-ADVCPRLVKLLLHPLPFPFGLTP 585 (767)
Q Consensus 508 l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~~~v~~~ 585 (767)
++..+ .....+.....++.+-.++..+++..++.++..+.||.-++.-....+.+ ....+.....+...+.
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E------- 641 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADE------- 641 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhh-------
Confidence 98877 33344555666777777788899999999999999999887655555555 3445555555555444
Q ss_pred HHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHH-HHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCC
Q 004225 586 PLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQ-VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGT 664 (767)
Q Consensus 586 a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~ 664 (767)
....+++.++..|+......+. ..-.......+..++.+.++.++........|+... .
T Consensus 642 -------------------~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~-~ 701 (748)
T KOG4151|consen 642 -------------------KFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA-L 701 (748)
T ss_pred -------------------HHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH-H
Confidence 3333334444434433333333 222234678888899999999999999999995544 5
Q ss_pred HHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHH
Q 004225 665 HEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLEN 701 (767)
Q Consensus 665 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~ 701 (767)
.+.+..+.+...++.+...-+-.-...++.+..+|..
T Consensus 702 ~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 702 FEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCLSA 738 (748)
T ss_pred HHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 6777776666666666655543333344444444433
No 195
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.22 E-value=0.017 Score=46.77 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCC
Q 004225 454 VREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 454 v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
.+...+.+++|++..++...+.+.+.|+++.+++... +..+|.+++.|++++.|++.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 3567889999999999999999999999999998875 6678999999999999999886
No 196
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.20 E-value=0.086 Score=56.43 Aligned_cols=204 Identities=22% Similarity=0.274 Sum_probs=128.3
Q ss_pred HHHHHhhh-cCCCHHHHHHHHHHHHHhcCCC-hHHHHhcCchHHHHhhc-cCCCCHHHHHHHHHHHHHHHh--hhhHHHH
Q 004225 361 LPGMLAGV-WSDDSGLQLEATTWFRKLLLPP-SEKVIQSGVVARFVEFL-TREDNPQLQLEAARALTNIAS--ENTNVVI 435 (767)
Q Consensus 361 i~~l~~~l-~s~~~~~~~~a~~~L~~l~~~~-~~~i~~~g~i~~L~~ll-~~~~~~~~~~~a~~~L~~l~~--~~~~~~~ 435 (767)
+..++... .+.++..+..+++.+..+++.. ..... ..++..+...+ ...+ +..+..+..++.-+++ -.|..-.
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l-~~~l~~~~~~~~~~~~-~~~~~~~~~~~~Wi~KaLv~R~~~~ 268 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL-DEFLDSLLQSISSSED-SELRPQALEILIWITKALVMRGHPL 268 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH-HHHHHHHHhhhcccCC-cchhHHHHHHHHHHHHHHHHcCCch
Confidence 44555554 3556888888999888888331 11111 13344444444 2223 4556666655555554 1111111
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchh-------------HHHHHhcCCHHHHHHHHccCCChHHHHHHH
Q 004225 436 DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD-------------RDLVLSEKALIPLLAQLNKHAKPSMLRNAT 502 (767)
Q Consensus 436 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~ 502 (767)
....+..|+.++.+ +++...|+.+++-+..+.++. ++.+.. ..++.+++.. +..+.+.+.+.+
T Consensus 269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~-~~~~~~~k~~yL 344 (415)
T PF12460_consen 269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGF-KEADDEIKSNYL 344 (415)
T ss_pred HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHH-hhcChhhHHHHH
Confidence 12346677777766 778889999999998773432 222221 2567777777 555556889999
Q ss_pred HHHHhhcCCCCCC-CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHH
Q 004225 503 KTLSRFCQGKPEP-PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVK 571 (767)
Q Consensus 503 ~~L~~l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 571 (767)
.+++++..+-|.. -.......+|.+++-+..+|.+++..++.++..+....++....-.+ .+++.+++
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 9999999876533 22234678999999999999999999999999999887665554332 35566554
No 197
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.13 E-value=0.48 Score=50.98 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccC----CChHHHHHHHHHHHhhcCCCCCC--Cccchhc
Q 004225 449 SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKH----AKPSMLRNATKTLSRFCQGKPEP--PFDQVRP 522 (767)
Q Consensus 449 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~----~~~~~~~~~~~~L~~l~~~~~~~--~~~~~~~ 522 (767)
..++++...|+.+|+|+...++..|+.+.+.|..+.+++.++.. .+.++.-.....+.-++...+.. ......+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 36789999999999999999999999999999999999999533 15566666666665555544222 2222334
Q ss_pred hHHHHHHHhc----------C-------CCHHHHHHHHHHHHhhccCChh
Q 004225 523 ALPALAQLVH----------S-------NDNDVLRYACEALSCLSDGTND 555 (767)
Q Consensus 523 ~i~~L~~ll~----------~-------~~~~v~~~a~~~L~~l~~~~~~ 555 (767)
++..+...+. . .+......++.++.|++...+.
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~ 172 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPK 172 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCc
Confidence 5555555442 1 2456677889999999865443
No 198
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.12 E-value=0.14 Score=47.41 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcC-CHHHHHHHHcc
Q 004225 413 PQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEK-ALIPLLAQLNK 491 (767)
Q Consensus 413 ~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g-~i~~L~~ll~~ 491 (767)
+.+|..++.+++.++..+...+ ...+|.+...|.++++.+|.+|+.+|..+...+. +--.| .+..++..+ .
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~l-~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKLL-V 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHHH-c
Confidence 7889999999999987333222 2468899999999999999999999999986532 11223 337777888 8
Q ss_pred CCChHHHHHHHHHHHhhcCC
Q 004225 492 HAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 492 ~~~~~~~~~~~~~L~~l~~~ 511 (767)
+++++++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999877
No 199
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.11 E-value=0.14 Score=47.53 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=71.2
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhh
Q 004225 605 GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLL 684 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll 684 (767)
.+|..++-+++-++...+...+. .++.+...|.++++.||+.|+.+|.++...+-... ...++..+..++
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~~~l~~l 72 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-----KGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-----hhhhhHHHHHHH
Confidence 46777777888777766655543 68889999999999999999999999987632111 112346677788
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 004225 685 LYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 685 ~~~~~~v~~~al~aL~~l~~~ 705 (767)
.+++++|+..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999976
No 200
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.11 E-value=0.015 Score=48.43 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=57.8
Q ss_pred ChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHH
Q 004225 676 CIKPLCDLLL-YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKIL 754 (767)
Q Consensus 676 ~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l 754 (767)
+++.|++++. +.|+.+...|+.=|+.+++..+. .+..+.+.|+-+.+.+++.|+|++|+..|..++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-------------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-------------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-------------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-------------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5778888884 56888888899999999986543 367889999999999999999999999999999
Q ss_pred HHhc
Q 004225 755 EIYW 758 (767)
Q Consensus 755 ~~~~ 758 (767)
..+.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 201
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.08 E-value=0.64 Score=51.97 Aligned_cols=226 Identities=17% Similarity=0.182 Sum_probs=146.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHH
Q 004225 449 SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALA 528 (767)
Q Consensus 449 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~ 528 (767)
+..|.+...|.|+++..++........... .....++.+..+..+.++..|+.+++..+ +...-.....+++..|.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHH
Confidence 356777779999999888664433332211 34445555556677888888888888888 33444556678888999
Q ss_pred HHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhH
Q 004225 529 QLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAK 608 (767)
Q Consensus 529 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~ 608 (767)
++....+.++....+.+|+.++..+++... ..++.+.|.++.+.........+...+-.++--+
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el--------------- 600 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEEL--------------- 600 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHH---------------
Confidence 999988999999999999999988876544 3455677777766643322013222222222111
Q ss_pred HHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCC----chhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhh-
Q 004225 609 EACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAE----FFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDL- 683 (767)
Q Consensus 609 ~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~l- 683 (767)
+. .... . .-+....+|.++..++.+. .....-|+..|.-+.....++--+.++. -+++++.++
T Consensus 601 --~q----~~~~----~-g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~t 668 (1005)
T KOG2274|consen 601 --LQ----IAAN----Y-GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKIT 668 (1005)
T ss_pred --HH----HHHh----h-cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhhe
Confidence 11 1111 0 0112247899999998776 5667777778887777654444333333 367777765
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhh
Q 004225 684 LLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 684 l~~~~~~v~~~al~aL~~l~~~~ 706 (767)
++++|..+.+.+-.+|..++...
T Consensus 669 lHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 669 LHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred eecCChHHHHhHHHHHHHHHhcC
Confidence 56788899999999999888763
No 202
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.00 E-value=2 Score=51.02 Aligned_cols=142 Identities=16% Similarity=0.193 Sum_probs=92.4
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVL 477 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 477 (767)
+.+..++..+..+. +.+|..|+.+|..+............+-..+..=+.+....||+.|+..+|......++....
T Consensus 816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q-- 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ-- 892 (1692)
T ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH--
Confidence 34666777777666 899999999999998811111111122223333445577889999999999888665554332
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHh---cCCCHHHHHHHHHHHHhhcc
Q 004225 478 SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLV---HSNDNDVLRYACEALSCLSD 551 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~ 551 (767)
....+.+-+ .++...||..++..+..+|...|.. .. ......+++ .++...++.-++.++.++-.
T Consensus 893 ---yY~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf--~~---i~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 893 ---YYDQIIERI-LDTGVSVRKRVIKILRDICEETPDF--SK---IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred ---HHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCCh--hh---HHHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 235566666 6788899999999999999875432 22 223333444 34445578888888877653
No 203
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.94 E-value=2.9 Score=47.90 Aligned_cols=223 Identities=15% Similarity=0.174 Sum_probs=134.0
Q ss_pred HhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc---cCCC----hHHHHHHH
Q 004225 435 IDGGAVPIFVKLLSS-----PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN---KHAK----PSMLRNAT 502 (767)
Q Consensus 435 ~~~~~l~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~----~~~~~~~~ 502 (767)
.+.|++..++..+.+ .+.+.....+..|...+. .+.+|+.+++.|+++.|+..+. .... .++.+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 366899999998876 234455555666666664 4778999999999999999985 3333 56777777
Q ss_pred HHHHhhcCCCCCCCc------c-------chhchHHHHHHHhc----CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCc
Q 004225 503 KTLSRFCQGKPEPPF------D-------QVRPALPALAQLVH----SNDNDVLRYACEALSCLSDGTNDKIQAVIEADV 565 (767)
Q Consensus 503 ~~L~~l~~~~~~~~~------~-------~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 565 (767)
.++..+......... . ....-+..++..+. ..++.+....+++|-+|+.+.++..+.+++
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--- 269 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--- 269 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH---
Confidence 666665443311100 0 12233666666665 346899999999999999999888877654
Q ss_pred HHHHHHHhcCCCCCCcccc---hHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc--CCHHHHHHHHHcCCHHHHHHH
Q 004225 566 CPRLVKLLLHPLPFPFGLT---PPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA--GNREQIQVVIDAGVIGPLVDL 640 (767)
Q Consensus 566 ~~~L~~lL~~~~~~~~v~~---~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~--~~~~~~~~~~~~~~i~~L~~l 640 (767)
.+-..++-.....+-.. ..+.++ +.+..+|-. .....++.+++.|++...+++
T Consensus 270 --~F~p~l~f~~~D~~~~~~~~~~Le~F--------------------~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~Y 327 (802)
T PF13764_consen 270 --HFKPYLDFDKFDEEHSPDEQFKLECF--------------------CEIAEGIPNNSNGNRLKDKILESGIVQDAIDY 327 (802)
T ss_pred --HHHHhcChhhcccccCchHHHHHHHH--------------------HHHHhcCCCCCchHHHHHHHHHhhHHHHHHHH
Confidence 22333321111000000 111111 222222222 235777889999999999998
Q ss_pred HhcCCc----------------hhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc
Q 004225 641 LQNAEF----------------FTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL 685 (767)
Q Consensus 641 l~~~~~----------------~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~ 685 (767)
+...-+ ..-..+...|.-++.+..+ .+.++..++++.+..+=.
T Consensus 328 L~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~--tQ~~~~~~~l~~lH~LEq 386 (802)
T PF13764_consen 328 LLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEP--TQLLIAEQLLPLLHRLEQ 386 (802)
T ss_pred HHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHH--HHHHHHhhHHHHHHHhhc
Confidence 875533 2334566677777776432 334466667755555443
No 204
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.64 Score=53.63 Aligned_cols=242 Identities=14% Similarity=0.121 Sum_probs=141.7
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHh---CCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCc-hhHHHHH
Q 004225 403 FVEFLTREDNPQLQLEAARALTNIAS-ENTNVVID---GGAVPIFVKLLSSPSDDVREKAVWALGNIARSSP-RDRDLVL 477 (767)
Q Consensus 403 L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~---~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~ 477 (767)
+.....+.+...+|..+.+.|..++. .......+ ..+...+.+-+++.+...+.....+|..+....+ +..+.+.
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34444444338999999999999988 11111111 1234555666666667777878888887775444 3333322
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHhhc--CC---C-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 004225 478 SEKALIPLLAQLNKHAKPSMLRNATKTLSRFC--QG---K-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSD 551 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~--~~---~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 551 (767)
. .|+.++=.+ ...+...++++-.+|..+. .. . ..+.....+.+++.+...+-.+...++...+-++..+..
T Consensus 738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 2 344444444 6777888888888877776 22 1 122244555666666655544444444333444444443
Q ss_pred CChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHc
Q 004225 552 GTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDA 631 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~ 631 (767)
...+......-.+++..+..+|.+... ++++.|+..+.-++...++..-.-...
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sr--------------------------eI~kaAI~fikvlv~~~pe~~l~~~~~ 868 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSR--------------------------EIAKAAIGFIKVLVYKFPEECLSPHLE 868 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCH--------------------------HHHHHHHHHHHHHHHcCCHHHHhhhHH
Confidence 222111111112456667777778877 666666666666666544433322233
Q ss_pred CCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 004225 632 GVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR 673 (767)
Q Consensus 632 ~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~ 673 (767)
.+++.+..+.+...-.++..+-..+-.++.....+....+..
T Consensus 869 ~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 869 ELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 478889998888888999988888888887666665555444
No 205
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.81 E-value=0.2 Score=50.86 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=113.5
Q ss_pred CchHHHH-hhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC-CchhHH
Q 004225 398 GVVARFV-EFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARS-SPRDRD 474 (767)
Q Consensus 398 g~i~~L~-~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~ 474 (767)
++++.++ ..+++++ +.+|..|..+|+-++- +. +... ..++.+...++.+++.++..|+.++..+... .....+
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~-~~a~--~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDK-ELAK--EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCh-HHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 4455554 6778888 8999999999999887 22 1111 2467788888778999999999999998732 111111
Q ss_pred HHH-------hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHh----cCCCHHHHHHHH
Q 004225 475 LVL-------SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLV----HSNDNDVLRYAC 543 (767)
Q Consensus 475 ~~~-------~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~ 543 (767)
... ....++.+.+.+ .+.+++++..++..++.+.-.+.... ...++..|+-+. ..++..++....
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred chhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 111 234667777788 67799999999999999887653333 233343333222 234467777666
Q ss_pred HHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCC
Q 004225 544 EALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPL 577 (767)
Q Consensus 544 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~ 577 (767)
..+-..+.....+...+ ...+++.+..+.+..+
T Consensus 178 ~Ffp~y~~s~~~~Q~~l-~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 178 VFFPVYASSSPENQERL-AEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHcCCHHHHHHH-HHHHHHHHHHHHhCcc
Confidence 67777777766555444 4467788887776654
No 206
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.83 Score=47.56 Aligned_cols=258 Identities=15% Similarity=0.111 Sum_probs=137.5
Q ss_pred hCCChHHHHHhh----CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCC
Q 004225 436 DGGAVPIFVKLL----SSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 436 ~~~~l~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 511 (767)
+.|.+..++..+ .+++..++.-|+..|+|.+++.|.-.... ..-.+..++.-|.+..+.+|+-.++.+|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 456666555544 34778899999999999998855422211 2225566666665777789999999988887755
Q ss_pred CCCC-CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHH-HHh--cCcHHHHHHHhcCCCCCCcccchHH
Q 004225 512 KPEP-PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQA-VIE--ADVCPRLVKLLLHPLPFPFGLTPPL 587 (767)
Q Consensus 512 ~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~--~~~~~~L~~lL~~~~~~~~v~~~a~ 587 (767)
.... -....-.+.-.+..+..+.+++++.++...+..++.......+. +.+ .+....++-.+.+.++ ....|+
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p---~va~AC 407 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNP---YVARAC 407 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCCh---HHHHHH
Confidence 4222 11222334445667778899999999988888776433222221 111 1122333444455554 334455
Q ss_pred HHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHc------CCHHHHHHHHhcC-------Cc-hhHHHHH
Q 004225 588 WTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDA------GVIGPLVDLLQNA-------EF-FTKKEAA 653 (767)
Q Consensus 588 ~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~------~~i~~L~~ll~~~-------~~-~v~~~a~ 653 (767)
+.....+.- . -.+++....+...........+.+.+. .+.+.+..++... .. .++..|.
T Consensus 408 r~~~~~c~p-~------l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aav 480 (533)
T KOG2032|consen 408 RSELRTCYP-N------LVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAV 480 (533)
T ss_pred HHHHHhcCc-h------hHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHH
Confidence 544333211 0 123333333332221111112222211 1223333333322 33 4555555
Q ss_pred HHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 654 RAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 654 ~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
..-.++...-.++.+...--.-....+-.+..++-++++..|..|+..+..
T Consensus 481 l~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 481 LKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 555555544333333332222334455556678899999999999987764
No 207
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=2.3 Score=46.46 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=76.4
Q ss_pred hcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhH
Q 004225 396 QSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR 473 (767)
Q Consensus 396 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 473 (767)
-+|.+..++.-..+.+ ..+|..++..|..+.. ..++..+..+....+..-+.+..+.||.+|..+|+.+-.+..+-
T Consensus 83 V~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKD-KKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 3455666666666777 8999999999999988 33444444456666666667788999999999999998432221
Q ss_pred HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHH
Q 004225 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLS 506 (767)
Q Consensus 474 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~ 506 (767)
+..++..+..+++.+++++||+.|+..+.
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 22367788888888999999999875543
No 208
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.74 E-value=0.4 Score=48.69 Aligned_cols=188 Identities=21% Similarity=0.257 Sum_probs=122.1
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHh---cCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-----hh
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQ---SGVVARFVEFLTREDNPQLQLEAARALTNIAS-----EN 430 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~---~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-----~~ 430 (767)
.+...+..+.......+..|+..+.++. .......+. .-++..+.+.++... .+.+..|++++.-++- +.
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCcc
Confidence 3667777887777899999999999988 444444442 346778888888888 5677778787777765 23
Q ss_pred hHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHHhc---CCchhHHHHHhcCCHHHHHHH--Hcc---------CCC
Q 004225 431 TNVVIDGGAVPIFVKLLSSP--SDDVREKAVWALGNIAR---SSPRDRDLVLSEKALIPLLAQ--LNK---------HAK 494 (767)
Q Consensus 431 ~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~g~i~~L~~l--l~~---------~~~ 494 (767)
...+++ ...|.|.+.+.+. .+.+|..++.+|+-++. ..++.....++ .++.+... ... .++
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCc
Confidence 445554 4678898888774 45677777777776653 22222111111 22322111 111 123
Q ss_pred hHHHHHHHHHHHhhcCCCCCC-CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 004225 495 PSMLRNATKTLSRFCQGKPEP-PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSD 551 (767)
Q Consensus 495 ~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 551 (767)
+.+...|+.+-+-+...-+.. -.......+|.|..+|.++|.+||.+|..+|.-+.+
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 567777777766666443332 123446789999999999999999999998877653
No 209
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.68 E-value=0.00088 Score=66.67 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=39.1
Q ss_pred ccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccc
Q 004225 66 QLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKY 136 (767)
Q Consensus 66 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 136 (767)
.-..|+|+. ..++.+|.+. ...+++|++|+++.. .++...+..| +.+++|.+|.+.+++.+++++
T Consensus 68 ~tveirLdq-N~I~~iP~~a--F~~l~~LRrLdLS~N-~Is~I~p~AF--~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGA--FKTLHRLRRLDLSKN-NISFIAPDAF--KGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred cceEEEecc-CCcccCChhh--ccchhhhceeccccc-chhhcChHhh--hhhHhhhHHHhhcCCchhhhh
Confidence 445555554 3466666655 356778888888764 3444444444 367777777777766665533
No 210
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=0.11 Score=59.29 Aligned_cols=161 Identities=22% Similarity=0.270 Sum_probs=121.7
Q ss_pred chHHHHhhcc----CCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCchhH
Q 004225 399 VVARFVEFLT----REDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLS-SPSDDVREKAVWALGNIARSSPRDR 473 (767)
Q Consensus 399 ~i~~L~~ll~----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~ 473 (767)
..|.+++..+ .++ |++|.+|.-+|+++.. ...-+-...+|.|+..+. ++++.+|.++..+++.++...|...
T Consensus 920 f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~--iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnli 996 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSD-PELQAAATLALGKLMC--ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI 996 (1251)
T ss_pred HHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccccc
Confidence 5666777774 344 9999999999999987 111111235799999997 6999999999999999997766543
Q ss_pred HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 004225 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGT 553 (767)
Q Consensus 474 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 553 (767)
+. ..+.+...+ .++++.+|++|+.+++++... .++...|.++-+...+.+++++++.-|=..+..++...
T Consensus 997 e~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 997 EP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred ch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 32 346667777 899999999999999999876 46677899999999999999999877776676666444
Q ss_pred hhHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 554 NDKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 554 ~~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
+. +. +++|-++.-|.+.+.
T Consensus 1067 n~----iy--nlLPdil~~Ls~~~l 1085 (1251)
T KOG0414|consen 1067 NT----IY--NLLPDILSRLSNGNL 1085 (1251)
T ss_pred cc----hh--hhchHHHHhhccCcc
Confidence 22 22 367777777777654
No 211
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.62 E-value=0.56 Score=47.91 Aligned_cols=228 Identities=9% Similarity=0.100 Sum_probs=145.1
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCc--c-----ch-hchHHHHHHHhcCCCHHHHHHHHHHH
Q 004225 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPF--D-----QV-RPALPALAQLVHSNDNDVLRYACEAL 546 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~--~-----~~-~~~i~~L~~ll~~~~~~v~~~a~~~L 546 (767)
.+...+.+..++..+ ..-+.+.+..++....++.+....... . .. ..++..|+....+ +++...+...+
T Consensus 71 Ei~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~--~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN--PDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS--TTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC--ccccchHHHHH
Confidence 355667888888888 788899999999999999888633322 1 11 3445555544443 44555566666
Q ss_pred HhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHH
Q 004225 547 SCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQ 626 (767)
Q Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~ 626 (767)
...+.+ +...+.+.....+..+.+.++.++- ++...|..++.-+ .........
T Consensus 148 Rec~k~-e~l~~~iL~~~~f~~ff~~~~~~~F--diasdaf~t~~~l------------------------lt~hk~~~a 200 (335)
T PF08569_consen 148 RECIKH-ESLAKIILYSECFWKFFKYVQLPNF--DIASDAFSTFKEL------------------------LTRHKKLVA 200 (335)
T ss_dssp HHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSH--HHHHHHHHHHHHH------------------------HHSSHHHHH
T ss_pred HHHHhh-HHHHHHHhCcHHHHHHHHHhcCCcc--HhHHHHHHHHHHH------------------------HhccHHHHH
Confidence 666555 3455567777788889999998888 5555555555544 333333333
Q ss_pred HHHHc---CCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCC-HHH-HHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHH
Q 004225 627 VVIDA---GVIGPLVDLLQNAEFFTKKEAARAISNAISGGT-HEQ-IKYLVRKGCIKPLCDLLLYADPEIVTICLKGLEN 701 (767)
Q Consensus 627 ~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~ 701 (767)
..+.. .++.....++.+++.-.|+.+...|+.+..... ... .+++-+..-+..++.+++++...++-.|-.+..-
T Consensus 201 ~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 201 EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 33332 246678889999999999999999999987422 222 2344445678889999999999999999998887
Q ss_pred HHHhhhhhhccCCccccccHHHHHHHhh--chHHHHHHHhcCC
Q 004225 702 ILKVGEAEMNTGTANRYFNHYARLVEAA--EGFKKIEDLKRHD 742 (767)
Q Consensus 702 l~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~l~~l~~~~ 742 (767)
++.... .+.++..++... ..+.-+.++..++
T Consensus 281 FVANp~----------K~~~I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 281 FVANPN----------KPPPIVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHH-SS-----------BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHhCCC----------CChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 776432 455677777533 4445555554444
No 212
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.58 E-value=0.088 Score=58.51 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=107.0
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc--CCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCC
Q 004225 437 GGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSE--KALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPE 514 (767)
Q Consensus 437 ~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 514 (767)
..++|.+++..+......+..-..+|.++..+.|. +.+... ...+.+++.+ .-+|..++..++.++..+....+.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccc
Confidence 46899999998876666777778888888877664 233321 3577777888 889999999999999988888777
Q ss_pred CCccchhchHHHHHHHhcCCC---HHHHHHHHHHHHhhccCCh-hHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 515 PPFDQVRPALPALAQLVHSND---NDVLRYACEALSCLSDGTN-DKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 515 ~~~~~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
........++|.++.+-.+.| ..+|..|+.++..+++..+ .... ..+-.++..+.+.|.++.-
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKR 1009 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKR 1009 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHH
Confidence 777778889999998888666 6789999999999998443 3333 2333578889999988876
No 213
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.55 E-value=0.003 Score=62.13 Aligned_cols=97 Identities=22% Similarity=0.235 Sum_probs=47.0
Q ss_pred CCCCccEEeeecCCCcccc---ccCccccCcCCCceeeeeccCC--c-ceEEeccchhhcccccCCCCccceeecccccc
Q 004225 4 GIQNLTRLTLSCCMNLRCL---FSSSTVSSFVQLQCIEIVGCPV--L-EELIVMDNQEERKKNIVMFPQLQYLKMSDLEK 77 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l---~~~~~~~~l~~L~~L~l~~~~~--l-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 77 (767)
.+..++.|+++|.. +..- .....+.+.++|+..++++..- + .++ ......+.+.+...|+|++|+|++.--
T Consensus 28 ~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei--~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEI--PEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred ccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHH--HHHHHHHHHHHhcCCceeEeecccccc
Confidence 34567777777753 1100 0001123444566666555420 0 000 001123345555667888888887421
Q ss_pred ccccc--CCCCcccCCCCccEEEeccCCc
Q 004225 78 FTSFC--TGDLDILEFPSLKELRISKCPE 104 (767)
Q Consensus 78 l~~~~--~~~~~~~~~~~L~~L~l~~c~~ 104 (767)
=...+ ...+ +.++.+|++|++.+|..
T Consensus 105 G~~g~~~l~~l-l~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 105 GPKGIRGLEEL-LSSCTDLEELYLNNCGL 132 (382)
T ss_pred CccchHHHHHH-HHhccCHHHHhhhcCCC
Confidence 11110 0111 34578888888888863
No 214
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.55 E-value=0.1 Score=39.36 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=53.6
Q ss_pred hHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhc-CCchhHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 004225 607 AKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQN-AEFFTKKEAARAISNAISGGTHEQIKYLVRKG 675 (767)
Q Consensus 607 ~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~ 675 (767)
.+.|+|+++++... +...+.+.+.++++.++++.+. +...+|-.|.++|+-++. +.+.++.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999774 5667767788999999999985 467899999999998887 578877766654
No 215
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.50 E-value=0.012 Score=56.60 Aligned_cols=105 Identities=17% Similarity=0.123 Sum_probs=50.9
Q ss_pred cccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEV 278 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 278 (767)
.|.++.|+++... +.. ......+++|+.|++++..--+-. .+-..+.+.++|.+.+.. ++++.. ...
T Consensus 306 ~Pkir~L~lS~N~-i~~-v~nLa~L~~L~~LDLS~N~Ls~~~---Gwh~KLGNIKtL~La~N~-iE~LSG-L~K------ 372 (490)
T KOG1259|consen 306 APKLRRLILSQNR-IRT-VQNLAELPQLQLLDLSGNLLAECV---GWHLKLGNIKTLKLAQNK-IETLSG-LRK------ 372 (490)
T ss_pred ccceeEEeccccc-eee-ehhhhhcccceEeecccchhHhhh---hhHhhhcCEeeeehhhhh-Hhhhhh-hHh------
Confidence 3556666664422 222 122455666666666664322221 222345666666665432 333321 111
Q ss_pred ccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 279 ITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 279 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
+=+|..|++++. +++.+..-....++|+|+++.+.+.|
T Consensus 373 --LYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 373 --LYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred --hhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 334455555432 22222111123578999999998886
No 216
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.26 Score=54.51 Aligned_cols=211 Identities=18% Similarity=0.174 Sum_probs=139.4
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDG 437 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 437 (767)
.+...+..+.++.+.++-.|+..++.++ ......+...+++...++.+++++ +-+-..|...+..++. +...
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lce-----vy~e 801 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCE-----VYPE 801 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHH-----hcch
Confidence 4666777888899999999999999999 344556668899999999999999 7888888887777775 3455
Q ss_pred CChHHHHH-hhCC---CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC
Q 004225 438 GAVPIFVK-LLSS---PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP 513 (767)
Q Consensus 438 ~~l~~L~~-lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 513 (767)
.++|-+.+ +... ..++.+...-.++.+++..-.+......+ -.+...+..+ ++++...|..++..++++++-..
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gv-repd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGV-REPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhc-CCchHHHHHhHHHHHHHHHHHHh
Confidence 67788877 4433 22344555556677666432222111111 2445556666 67788889999999999997654
Q ss_pred CCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChhHHHHHHh---cCcHHHHHHHhcCCCC
Q 004225 514 EPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTNDKIQAVIE---ADVCPRLVKLLLHPLP 578 (767)
Q Consensus 514 ~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~lL~~~~~ 578 (767)
..-......+...++.+.+ ++..-+|++|+..+..+-.+.....-.+.+ .+....+..+....+.
T Consensus 880 ~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~d 948 (982)
T KOG4653|consen 880 FQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDD 948 (982)
T ss_pred hhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCch
Confidence 3333344455555666665 555889999999998888765432222221 1344555555555544
No 217
>PRK14707 hypothetical protein; Provisional
Probab=95.45 E-value=8 Score=48.09 Aligned_cols=355 Identities=15% Similarity=0.094 Sum_probs=188.2
Q ss_pred CHHHHHhhhc--CCCHHHHHHHHHHHHHhcCC--ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHH
Q 004225 360 SLPGMLAGVW--SDDSGLQLEATTWFRKLLLP--PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNV 433 (767)
Q Consensus 360 ~i~~l~~~l~--s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~ 433 (767)
+|..+++.+. .+++.-+..+...-..+++. -...+-.+|+-..|-.+-+-++.+.....+..+-..++. ..++.
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~a 285 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKA 285 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHh
Confidence 3444555554 34444444443333344422 233333444444444455555534444444444455544 23333
Q ss_pred HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHH-hhcCC
Q 004225 434 VIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLS-RFCQG 511 (767)
Q Consensus 434 ~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~-~l~~~ 511 (767)
+ +...+...+..|+. ++..+...|+..|..-..++++.++.+ +.-.+...++.|.+-++..+-+.++.+|. .++.+
T Consensus 286 l-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d 363 (2710)
T PRK14707 286 L-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVAD 363 (2710)
T ss_pred c-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccC
Confidence 3 23334445555544 888888888887777666777776544 44566777777767777777666666664 56666
Q ss_pred CCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHh
Q 004225 512 KPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVR 591 (767)
Q Consensus 512 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~ 591 (767)
....+.....++-..|-.+-+=++..+-..+...|..-.....+..+.+--.++-..|-.+-+-++.
T Consensus 364 ~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~------------- 430 (2710)
T PRK14707 364 PELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDL------------- 430 (2710)
T ss_pred HhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcc-------------
Confidence 5555666666665555555555565555555555554444444555544334444445445455665
Q ss_pred hhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHH
Q 004225 592 YIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYL 671 (767)
Q Consensus 592 ~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l 671 (767)
.+-..+...+..-...+.+..+.+--.++...|--+-+=++..+-..|+..|..=... +++..+.+
T Consensus 431 -------------~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~-~~~l~~a~ 496 (2710)
T PRK14707 431 -------------PICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAH-ERRLRKAL 496 (2710)
T ss_pred -------------hhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcc-cHHHHhhc
Confidence 3444444444444455555555443334444444444556777777777766655554 45555544
Q ss_pred HHcCChHHHHhhhcCCCHH-HHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHH
Q 004225 672 VRKGCIKPLCDLLLYADPE-IVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKA 750 (767)
Q Consensus 672 ~~~~~i~~L~~ll~~~~~~-v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a 750 (767)
--.++...|-.+-+.++.. ..+.+.|....+.... .....+..-+....+..+-.+++...-+.|
T Consensus 497 ~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~--------------~l~~~~~~~~~~~~lnalSKwp~s~~C~~A 562 (2710)
T PRK14707 497 KPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL--------------QLRKAFDAHQVVNTLKALSKWPDKQLCAVA 562 (2710)
T ss_pred CHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch--------------hhhhhhhhHHHHHHHHhhhcCCchhHHHHH
Confidence 4445666677777777644 4444555555555321 122333333344444555555555554444
Q ss_pred HHHHHHh
Q 004225 751 VKILEIY 757 (767)
Q Consensus 751 ~~~l~~~ 757 (767)
..-|...
T Consensus 563 ~~~iA~~ 569 (2710)
T PRK14707 563 ASGLAER 569 (2710)
T ss_pred HHHHHHH
Confidence 4444433
No 218
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.45 E-value=8.3 Score=46.29 Aligned_cols=140 Identities=10% Similarity=0.099 Sum_probs=85.1
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCCh
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAV 440 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l 440 (767)
+..++..+..+...++..|++.|..+...+........+-.....-+.++. ..+|.+|+..++...-.+.+.+. ...
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~--qyY 894 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSS-ASVREAALDLVGRFVLSIPELIF--QYY 894 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccch-hHHHHHHHHHHhhhhhccHHHHH--HHH
Confidence 344566677888999999999999998333222222222223333334455 68999999999876652222221 123
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc--cCCChHHHHHHHHHHHhhc
Q 004225 441 PIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN--KHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 441 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~~~~~~L~~l~ 509 (767)
..+..-+.++...||..++.++..++...|++-. .+....++++ .++...++.-+..++.++=
T Consensus 895 ~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 895 DQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 3455556667889999999999999988876533 1223333332 3333446666666666553
No 219
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.0021 Score=58.15 Aligned_cols=68 Identities=21% Similarity=0.369 Sum_probs=48.7
Q ss_pred ccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 60 NIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 60 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
.+..+++++.|.+.+|..+.+|....++ .-.++|+.|+|++|+.+++.....+ ..+++|+.|.+.+-+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L--~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACL--LKLKNLRRLHLYDLP 187 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHH--HHhhhhHHHHhcCch
Confidence 4455778888888888888888766553 3578888888888888887643323 367788888776543
No 220
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.32 E-value=0.0033 Score=61.81 Aligned_cols=200 Identities=12% Similarity=0.112 Sum_probs=109.2
Q ss_pred cCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccc-----------cc-cCCCCcccCCCCccE
Q 004225 29 SSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFT-----------SF-CTGDLDILEFPSLKE 96 (767)
Q Consensus 29 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----------~~-~~~~~~~~~~~~L~~ 96 (767)
...|+|++|+++++- +. .++-..+..-+.+...|++|++.+|--=. +. .... ..+-+.||.
T Consensus 89 ~~~~~L~~ldLSDNA-~G----~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk--~~~~~~Lrv 161 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNA-FG----PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKK--AASKPKLRV 161 (382)
T ss_pred hcCCceeEeeccccc-cC----ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhc--cCCCcceEE
Confidence 466789999998874 11 11113333445567889999999874110 00 0111 234578888
Q ss_pred EEeccCCcccccccccccc--cccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCCCCcccc
Q 004225 97 LRISKCPEFMVRTTSIFTE--RVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSASLPYEKV 174 (767)
Q Consensus 97 L~l~~c~~l~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 174 (767)
+...+.. +.+.....++. ...++|+++++..+..... +...+...+.++++|+.|++.......--
T Consensus 162 ~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~e--------G~~al~eal~~~~~LevLdl~DNtft~eg--- 229 (382)
T KOG1909|consen 162 FICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPE--------GVTALAEALEHCPHLEVLDLRDNTFTLEG--- 229 (382)
T ss_pred EEeeccc-cccccHHHHHHHHHhccccceEEEecccccCc--------hhHHHHHHHHhCCcceeeecccchhhhHH---
Confidence 8765432 33221111110 2347888888886654222 11234455788888888888765431110
Q ss_pred cCCceeeeeecccccchhh-ccccccccccEEEecCCCcccccc----C-CCCcCCCCCEEEeccCccchhhcCch--hh
Q 004225 175 ENGMWVEIREAFHLEHILI-RESSVTNNLVILRVKGCDHLVNLV----P-PSTSFQNLTNMVVSRCNNLKIVLTSL--IA 246 (767)
Q Consensus 175 ~~l~~l~i~~~~~l~~~~~-~~~~~~~~L~~L~i~~~~~~~~~~----~-~~~~~~~L~~L~l~~c~~l~~~~~~~--~~ 246 (767)
++.+ .....+++|++|++++|..-..-. . --..+|+|+.|.+.+|..-.+-.... ..
T Consensus 230 ---------------s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~ 294 (382)
T KOG1909|consen 230 ---------------SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM 294 (382)
T ss_pred ---------------HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH
Confidence 1111 112335778888888875432100 0 01347888888888876544321111 11
Q ss_pred hccccCcEEeEccccc
Q 004225 247 KTLVRLRYMKIKSCDR 262 (767)
Q Consensus 247 ~~l~~L~~L~i~~c~~ 262 (767)
...|.|+.|++++|..
T Consensus 295 ~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 295 AEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcchhhHHhcCCcccc
Confidence 2368888898888763
No 221
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.24 E-value=0.0095 Score=57.18 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=76.9
Q ss_pred cccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccccc
Q 004225 197 SVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKD 276 (767)
Q Consensus 197 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 276 (767)
..+..|++|++++ +.++.+-.+..-.|.++.|+++... +..+.. .+.+++|..|++++.. +.++...-..
T Consensus 281 dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n---La~L~~L~~LDLS~N~-Ls~~~Gwh~K---- 350 (490)
T KOG1259|consen 281 DTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNR-IRTVQN---LAELPQLQLLDLSGNL-LAECVGWHLK---- 350 (490)
T ss_pred chHhhhhhccccc-cchhhhhhhhhhccceeEEeccccc-eeeehh---hhhcccceEeecccch-hHhhhhhHhh----
Confidence 3457788888876 3444444455678999999998754 333322 2458999999998754 4433222212
Q ss_pred ccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccc--cccCCCCcccchhhcccc
Q 004225 277 EVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIF--SEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 277 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~--~~~~~~~~~L~~l~i~~~ 342 (767)
+-+.|.|.+.+ ..++++.. ...+=+|.+|++++. ++..+ -.+.-..|.|+.+...+.
T Consensus 351 ----LGNIKtL~La~-N~iE~LSG---L~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 351 ----LGNIKTLKLAQ-NKIETLSG---LRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred ----hcCEeeeehhh-hhHhhhhh---hHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCC
Confidence 56788888875 23444431 234567888888876 33322 123445566777776663
No 222
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.22 E-value=1.9 Score=40.72 Aligned_cols=143 Identities=11% Similarity=0.159 Sum_probs=97.5
Q ss_pred HHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhc
Q 004225 539 LRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNIT 618 (767)
Q Consensus 539 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~ 618 (767)
..+++..+--++.+. +....+.++.+.-.+..+|...+.... .+ ..|..++++|+.++
T Consensus 96 VcnaL~LlQcvASHp-dTr~~FL~A~iPlylYpfL~Tt~~~r~---------------fE------yLRLtsLGVIgaLv 153 (293)
T KOG3036|consen 96 VCNALALLQCVASHP-DTRRAFLRAHIPLYLYPFLNTTSKSRP---------------FE------YLRLTSLGVIGALV 153 (293)
T ss_pred HHHHHHHHHHHhcCc-chHHHHHHccChhhhHHhhhccccCCc---------------hH------HHhHHHHHHHHHHH
Confidence 344555555555554 566668888888888888876543100 00 44556666666666
Q ss_pred c-CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHc--------CChH-HHHhhhcCCC
Q 004225 619 A-GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRK--------GCIK-PLCDLLLYAD 688 (767)
Q Consensus 619 ~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~--------~~i~-~L~~ll~~~~ 688 (767)
. ++.+....+...+++|..++.++.++...|..|+.++..+..+ ..+..++.+. .++. ....+.+.++
T Consensus 154 k~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlld--D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps 231 (293)
T KOG3036|consen 154 KNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLD--DVGLYYICQTAERFSAVALVLGKMVFQLVSMPS 231 (293)
T ss_pred hcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhc--cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6 4566777888999999999999999999999999999998874 4444444431 1122 2333455688
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004225 689 PEIVTICLKGLENILKV 705 (767)
Q Consensus 689 ~~v~~~al~aL~~l~~~ 705 (767)
+.+.+.++.+..++..+
T Consensus 232 ~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 232 PRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 88888898888888753
No 223
>PLN03150 hypothetical protein; Provisional
Probab=95.13 E-value=0.033 Score=62.88 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=38.6
Q ss_pred ccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccc
Q 004225 202 LVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITF 281 (767)
Q Consensus 202 L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 281 (767)
++.|++.++.....++.....+++|+.|+|+++.....++.. ++.+++|+.|+++++.--..++..... +
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~--~~~l~~L~~LdLs~N~lsg~iP~~l~~--------L 489 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS--LGSITSLEVLDLSYNSFNGSIPESLGQ--------L 489 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH--HhCCCCCCEEECCCCCCCCCCchHHhc--------C
Confidence 444555444332333333445556666666555433333221 244566666666555433333333322 5
Q ss_pred cccceEeecCCC
Q 004225 282 RELKELKLVDLE 293 (767)
Q Consensus 282 ~~L~~L~l~~~~ 293 (767)
++|+.|+++++.
T Consensus 490 ~~L~~L~Ls~N~ 501 (623)
T PLN03150 490 TSLRILNLNGNS 501 (623)
T ss_pred CCCCEEECcCCc
Confidence 566666665543
No 224
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.44 Score=52.90 Aligned_cols=221 Identities=14% Similarity=0.141 Sum_probs=134.2
Q ss_pred hhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHH
Q 004225 446 LLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALP 525 (767)
Q Consensus 446 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~ 525 (767)
.+.++.+.++.+|+..+..++... +....+...+++...++.+ .+.|+.+--+|+..+..+|.- ....++|
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcev-------y~e~il~ 805 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEV-------YPEDILP 805 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHh-------cchhhHH
Confidence 344566788999999999999754 3445566788999999999 899999999999987777754 2345777
Q ss_pred HHHHHhcC----CCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcce
Q 004225 526 ALAQLVHS----NDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLT 601 (767)
Q Consensus 526 ~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 601 (767)
.+.....+ ...+.+...-.++.++.....+......+ .++...++..++++. ..+..++.++|++++....
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~--~~RaSS~a~lg~Lcq~~a~-- 880 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDH--EFRASSLANLGQLCQLLAF-- 880 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchH--HHHHhHHHHHHHHHHHHhh--
Confidence 77764432 21345555557777776554443333322 466777777887766 6666666666666531110
Q ss_pred eehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh-cCCchhHHHHHHHHHHhhcCCCHHHHHHHHH---cCCh
Q 004225 602 QCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ-NAEFFTKKEAARAISNAISGGTHEQIKYLVR---KGCI 677 (767)
Q Consensus 602 ~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~---~~~i 677 (767)
...+ .+. .++..++.+.+ ++++.+|+.|+..+..+..+-..+.. .+.. .+..
T Consensus 881 ------------------~vsd---~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlL-pilr~~l~Dl~ 936 (982)
T KOG4653|consen 881 ------------------QVSD---FFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLL-PILRLLLIDLD 936 (982)
T ss_pred ------------------hhhH---HHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhH-HHHHHHHHHHH
Confidence 0011 111 13445555555 45678999999999988876333322 2222 2333
Q ss_pred HHHHhhhcC-CCHHHHHHHHHHHHHHHH
Q 004225 678 KPLCDLLLY-ADPEIVTICLKGLENILK 704 (767)
Q Consensus 678 ~~L~~ll~~-~~~~v~~~al~aL~~l~~ 704 (767)
..+...... ++..++..|..++..+-.
T Consensus 937 ~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 937 ETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 444444443 344455556655555443
No 225
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.016 Score=55.69 Aligned_cols=38 Identities=3% Similarity=0.025 Sum_probs=20.7
Q ss_pred CCCCEEEeccCccchhhcCchhhhccccCcEEeEcccc
Q 004225 224 QNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCD 261 (767)
Q Consensus 224 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 261 (767)
+.+++|+..+|......-..-+..-+|+++.+.+.+||
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 45666666666544443322223346667766666665
No 226
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.01 E-value=0.51 Score=47.97 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=107.8
Q ss_pred HHHHH-hhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHH--
Q 004225 361 LPGML-AGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVV-- 434 (767)
Q Consensus 361 i~~l~-~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~-- 434 (767)
+..++ ..+++.++.++..|++.|+-++ +... . ...++.+.+.++.++ +.++..|+.++..+.. .....+
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~---a-~~~l~l~~~~~~~~~-~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL---A-KEHLPLFLQALQKDD-EEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH---H-HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCchhccc
Confidence 44443 6788999999999999999988 3321 1 113567777776665 8999999999999988 111111
Q ss_pred --------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHH-c--cCCChHHHHHHHH
Q 004225 435 --------IDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQL-N--KHAKPSMLRNATK 503 (767)
Q Consensus 435 --------~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll-~--~~~~~~~~~~~~~ 503 (767)
....++..+..++.+.+++++..|+..++.+.-.+.-.- ...++..|+-.. . ..++..++.....
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 123467788888988999999999999999875433221 022334443333 2 2244667777777
Q ss_pred HHHhhcCCCCCCCccchhchHHHHHHHhc
Q 004225 504 TLSRFCQGKPEPPFDQVRPALPALAQLVH 532 (767)
Q Consensus 504 ~L~~l~~~~~~~~~~~~~~~i~~L~~ll~ 532 (767)
.+-.++..++..+......++|.+..+..
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 77777776654455555666666666554
No 227
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.01 E-value=0.032 Score=34.26 Aligned_cols=28 Identities=46% Similarity=0.775 Sum_probs=21.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIAR 467 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~ 467 (767)
+|.+++++.++++++|..|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5777788888888888888888887764
No 228
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.01 E-value=0.51 Score=48.72 Aligned_cols=181 Identities=16% Similarity=0.190 Sum_probs=117.9
Q ss_pred HHHHHhhhcC-CCHHHHHHHHHHHHHhcCCChHHHHh---cCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHh
Q 004225 361 LPGMLAGVWS-DDSGLQLEATTWFRKLLLPPSEKVIQ---SGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVID 436 (767)
Q Consensus 361 i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~i~~---~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 436 (767)
+-.++..++. +..+.+..|+..|..+.......+++ ..++..+++.|.+..++.++..|.++|+.++..+...+.+
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 3344445543 35566777888888877333222332 3456777888888444899999999999999844444432
Q ss_pred C--CChHHHHHhhCCCCHHHHHHHH-HHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC
Q 004225 437 G--GAVPIFVKLLSSPSDDVREKAV-WALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP 513 (767)
Q Consensus 437 ~--~~l~~L~~lL~~~~~~v~~~a~-~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 513 (767)
. -++..+++.-.+.++++...|. .++.-+++..|.. .|..+..++ ...|......++..+..+...-+
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~I-lt~D~~~~~~~iKm~Tkl~e~l~ 438 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLI-LTADEPRAVAVIKMLTKLFERLS 438 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHH-hcCcchHHHHHHHHHHHHHhhcC
Confidence 2 2444555555555555544444 4566667776654 334445555 44666666677777777776642
Q ss_pred CC-CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 004225 514 EP-PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLS 550 (767)
Q Consensus 514 ~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 550 (767)
.. -......+.|.+++...+.+..||+.++.||..+.
T Consensus 439 ~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 439 AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 22 33345678999999999999999999999998775
No 229
>PRK14707 hypothetical protein; Provisional
Probab=94.95 E-value=13 Score=46.28 Aligned_cols=342 Identities=15% Similarity=0.099 Sum_probs=183.9
Q ss_pred HHHHHhhhc--CCCHHHHHHHHHHHHHhcCC--ChHHHHhcCchHHHHh-hccCCCCHHHHHHHHHHHHHHHh-hhhHHH
Q 004225 361 LPGMLAGVW--SDDSGLQLEATTWFRKLLLP--PSEKVIQSGVVARFVE-FLTREDNPQLQLEAARALTNIAS-ENTNVV 434 (767)
Q Consensus 361 i~~l~~~l~--s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~L~~-ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~ 434 (767)
+..+++..+ .++..-+..+...-..++.. ....+-.+| |..+++ +-+=+++++.+..|...-..++. +....-
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~q~-ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~ 243 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAMDAQG-VATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE 243 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhcccchHH-HHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh
Confidence 455555554 34444444444444444422 223332333 444444 44445546666655544455555 332333
Q ss_pred HhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHh-hcCCC
Q 004225 435 IDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSR-FCQGK 512 (767)
Q Consensus 435 ~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~-l~~~~ 512 (767)
++...+...+..|.. ++..+..+++.++..-....+..++.+ +...+...++-|.+.++..+-+.+...+.. +..+.
T Consensus 244 ~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~ 322 (2710)
T PRK14707 244 LKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDP 322 (2710)
T ss_pred CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH
Confidence 344456666666655 676666666666655443545555544 444556666777677888887777766654 44433
Q ss_pred CCCCccchhchHHHHHHHhcCCC-HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHh-cCCCCCCcccchHHHHH
Q 004225 513 PEPPFDQVRPALPALAQLVHSND-NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLL-LHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 513 ~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~~~v~~~a~~~L 590 (767)
...+.....++-..|-.+-+=+| ...+..+......++.. ++..+.+- ...+..++..+ +-++.
T Consensus 323 ~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d-~~l~~~l~-~q~~a~~lNalsKWp~~------------ 388 (2710)
T PRK14707 323 ELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVAD-PELRKDLE-PQGVSSVLNALSKWPDT------------ 388 (2710)
T ss_pred hhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccC-Hhhhcccc-hhHHHHHHhhhhcCCCc------------
Confidence 33333333333333333334344 33444444444444443 33333332 22333333333 33444
Q ss_pred hhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHH
Q 004225 591 RYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKY 670 (767)
Q Consensus 591 ~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 670 (767)
.+-..|...|..-..++++..+.+--.|+-..|-.+-+=++..+...++.+|.--..+ +.+..+.
T Consensus 389 --------------~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~ 453 (2710)
T PRK14707 389 --------------PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKA 453 (2710)
T ss_pred --------------hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhh
Confidence 3344444455544456677776666666666666666678888988888888877776 5666655
Q ss_pred HHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHH
Q 004225 671 LVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGI 746 (767)
Q Consensus 671 l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v 746 (767)
|--.++...|-.+-+.+|..+...+..+|..=+.... .++..+.-.++...|..+-.-++...
T Consensus 454 ~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~-------------~l~~a~~~q~~~~~L~aLSK~Pd~~~ 516 (2710)
T PRK14707 454 LDPINVTQALDALSKWPDTPICGQTASALAARLAHER-------------RLRKALKPQEVVIALHSLSKWPDTPI 516 (2710)
T ss_pred cChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccH-------------HHHhhcCHHHHHHHHHHhhcCCCcHH
Confidence 5445666666667778888877777777665443211 13444444444555555555555443
No 230
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.89 E-value=0.032 Score=46.45 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=59.3
Q ss_pred CHHHHHHHHh-cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 633 VIGPLVDLLQ-NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 633 ~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
++..|+.+|. +.++.+...||.-|+.++.. .|.....+-+.|+-..+++++.++|++|+.+|+.++..++.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~-~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRH-YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHH-ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5788999994 55778888899999999987 46777766678999999999999999999999999999885
No 231
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=2.2 Score=46.83 Aligned_cols=133 Identities=24% Similarity=0.218 Sum_probs=95.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCc
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPF 517 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 517 (767)
++=+.+-+++.+.|+-+|...+.+++---.++. +.++|..|+..--++.+.+|++.|+-+|+-++..+|.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--- 588 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--- 588 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh---
Confidence 455666678888999999998887775544433 2347788888844889999999999999999877654
Q ss_pred cchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 518 DQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
..|..+++|. +-++-||..++.+|+--|.+..... .+..|-.+..+... -|+.-|+-+++.+.
T Consensus 589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~--fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVD--FVRQGALIALAMIM 652 (929)
T ss_pred -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHH--HHHHHHHHHHHHHH
Confidence 3455666665 6679999999999998887754322 22233334445554 67777887777775
No 232
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.59 E-value=1.3 Score=41.69 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=96.2
Q ss_pred hHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC-----CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 004225 607 AKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA-----EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLC 681 (767)
Q Consensus 607 ~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~ 681 (767)
|..-+.++..+.+..++.+..++++.+=-.+...|... ...+|-.+..+++.+...++.+.+.+++..++++..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 33334444455555577777788877766666666543 3468999999999999998999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhch-----HHHHHHHhcCCChHHHHHHHHHHHH
Q 004225 682 DLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEG-----FKKIEDLKRHDSNGICEKAVKILEI 756 (767)
Q Consensus 682 ~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~~~l~~l~~~~~~~v~~~a~~~l~~ 756 (767)
+.++.++..-+..|..++..++.++.... -.+...++--+ -..+.++.+.+++.+-+.++.+.-+
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~----------YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlr 244 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLY----------YICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLR 244 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHH----------HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999886543222 12222222211 2334455666777665555544443
No 233
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.58 E-value=0.37 Score=55.42 Aligned_cols=144 Identities=16% Similarity=0.098 Sum_probs=104.7
Q ss_pred hchHHHHHHHhc----CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhc-CCCCCCcccchHHHHHhhhhc
Q 004225 521 RPALPALAQLVH----SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLL-HPLPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 521 ~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~~v~~~a~~~L~~l~~ 595 (767)
..+.|.++...+ .+|++++.+|.-+++.++.-+.+... .-+|.++..+. ++++ .++.++.-+++-++
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p--~IRsN~VvalgDla- 989 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSP--RIRSNLVVALGDLA- 989 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCc--eeeecchheccchh-
Confidence 346677777774 56799999999999999877654443 25788888887 6677 55555555555444
Q ss_pred cCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 004225 596 GDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKG 675 (767)
Q Consensus 596 ~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~ 675 (767)
...+..++. .-+.|...+++.++.||+.|..+++++...+ .+-=.|
T Consensus 990 -----------------------v~fpnlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKG 1035 (1251)
T KOG0414|consen 990 -----------------------VRFPNLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKG 1035 (1251)
T ss_pred -----------------------hhcccccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcc
Confidence 333333332 4467888899999999999999999999852 222378
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
.+.-+..++.+++++|+..|-....-+...+
T Consensus 1036 ql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1036 QLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 8999999999999999998886666555543
No 234
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.45 E-value=0.067 Score=32.83 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=26.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 523 ALPALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 523 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
++|.+++++++++++||..|++++..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
No 235
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.35 E-value=0.24 Score=55.25 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=122.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCch-------------hHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHh
Q 004225 441 PIFVKLLSSPSDDVREKAVWALGNIARSSPR-------------DRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSR 507 (767)
Q Consensus 441 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-------------~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 507 (767)
..|+..|+. +++-..++.++.-+.++++. +++.+. ..++|.+++.+ .......+..-+.+|++
T Consensus 818 ~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 818 EKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence 445555554 33445566666655544433 233332 34788888888 56777888889999999
Q ss_pred hcCCCCCC-CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCC-Ccccch
Q 004225 508 FCQGKPEP-PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPF-PFGLTP 585 (767)
Q Consensus 508 l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-~~v~~~ 585 (767)
+..+-|.. -.-......|.|++.+.-+|..++..++.++.-+....+.....-.+ .++|.+..+=.+++.. -
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~----- 967 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMM----- 967 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchh-----
Confidence 88765543 22244678899999999999999999999998877554433332222 4778888777776630 1
Q ss_pred HHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhh
Q 004225 586 PLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAI 660 (767)
Q Consensus 586 a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~ 660 (767)
.+|..|+.++..++..-|...-.-....++..++..|+++...||++|+.+=.++.
T Consensus 968 -------------------~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 968 -------------------VVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred -------------------HHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 34444555555444422222222233357788888898888899999988765554
No 236
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.30 E-value=0.91 Score=49.22 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHH
Q 004225 534 NDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRT 613 (767)
Q Consensus 534 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~ 613 (767)
.+.+++.-|...+......-++.... ++..++.+..+.|. .||..|+..
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~--------------------------~iR~~aik~ 82 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDV--------------------------QIRKQAIKG 82 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSH--------------------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH--------------------------HHHHHHHHh
Confidence 45677777777777777666655443 45667777777777 778888888
Q ss_pred HhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc---CCCHH
Q 004225 614 ISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL---YADPE 690 (767)
Q Consensus 614 l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~ 690 (767)
|..++.++++.+.. ++..|.++|++.++.....+-.+|..+... ++.. .+..+++-+. .++..
T Consensus 83 lp~~ck~~~~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~-d~k~--------tL~~lf~~i~~~~~~de~ 148 (556)
T PF05918_consen 83 LPQLCKDNPEHVSK-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQ-DPKG--------TLTGLFSQIESSKSGDEQ 148 (556)
T ss_dssp GGGG--T--T-HHH-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH--HHH--------HHHHHHHHHH---HS-HH
T ss_pred HHHHHHhHHHHHhH-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhc-CcHH--------HHHHHHHHHHhcccCchH
Confidence 88888876666554 567899999988877666666777766654 2222 2333444443 56778
Q ss_pred HHHHHHHHHHHHHH
Q 004225 691 IVTICLKGLENILK 704 (767)
Q Consensus 691 v~~~al~aL~~l~~ 704 (767)
+|+.++..|..-+.
T Consensus 149 ~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 149 VRERALKFLREKLK 162 (556)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHh
Confidence 89988888865544
No 237
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.18 E-value=3.8 Score=40.46 Aligned_cols=232 Identities=14% Similarity=0.152 Sum_probs=127.4
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHHhcCCchhHHHHHhc
Q 004225 402 RFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSS--PSDDVREKAVWALGNIARSSPRDRDLVLSE 479 (767)
Q Consensus 402 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 479 (767)
.|=..|.+++ +.+|..|...|..+............-+..|+.+..+ .|......++.++..+.....-.... ..
T Consensus 3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~~ 79 (262)
T PF14500_consen 3 SLGEYLTSED-PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--AV 79 (262)
T ss_pred chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--HH
Confidence 4456778888 8999999999999988322222333446677776654 56666666677777776322211111 01
Q ss_pred CCHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChhHH
Q 004225 480 KALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTNDKI 557 (767)
Q Consensus 480 g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~ 557 (767)
..++.+.+-.. +.-....|..+...+..+.......-.......+..+++.+. ..|++-...+...+..+...-+.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-- 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-- 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--
Confidence 12223322221 233456777777777777655311112223456666666666 56787777777777766644331
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhc----cCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCC
Q 004225 558 QAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVK----GDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGV 633 (767)
Q Consensus 558 ~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~----~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~ 633 (767)
....+.+.+.+..--+ +.. +++.. -.+......+.+....++.. ..-.
T Consensus 158 -----~~~~e~lFd~~~cYFP--------------I~F~pp~~dp~~----IT~edLk~~L~~cl~s~~~f-----a~~~ 209 (262)
T PF14500_consen 158 -----SEFAEDLFDVFSCYFP--------------ITFRPPPNDPYG----ITREDLKRALRNCLSSTPLF-----APFA 209 (262)
T ss_pred -----chhHHHHHHHhhheee--------------eeeeCCCCCCCC----CCHHHHHHHHHHHhcCcHhh-----HHHH
Confidence 1233333333322110 000 01100 11222233333333333322 2247
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHH
Q 004225 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTHE 666 (767)
Q Consensus 634 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 666 (767)
+|.|++=|.++...+|..+..+|..++.....+
T Consensus 210 ~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~ 242 (262)
T PF14500_consen 210 FPLLLEKLDSTSPSVKLDSLQTLKACIENYGAD 242 (262)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHH
Confidence 899999999999999999999999887654333
No 238
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.13 E-value=1.5 Score=50.15 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=130.8
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhc-CCC-hHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhh--HHHHhC
Q 004225 362 PGMLAGVWSDDSGLQLEATTWFRKLL-LPP-SEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENT--NVVIDG 437 (767)
Q Consensus 362 ~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~ 437 (767)
+.+-..+.+.++..+.+|+..+.... +.. .......|.+-.+++....+.+..+...|+.+|..++...+ ..-+..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 34455677899999999999999888 444 11222345666666666655558888999999999998111 122234
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC--CCC
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK--PEP 515 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--~~~ 515 (767)
++.|.++.-+......+++.+..++-.++...+. ....+.++..+ .+.++..+..+...+....... ...
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 6788999999888888887777776666643221 12457777888 8999999988777776555443 233
Q ss_pred CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 516 PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 516 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
......+.+|.++....+.+.+||.++..++..+...
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 5556678999999999999999999999999887644
No 239
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.12 E-value=0.39 Score=52.49 Aligned_cols=173 Identities=16% Similarity=0.130 Sum_probs=115.4
Q ss_pred hcCchHHHHhhccCCCCHHHHHHHHHHHHHH---HhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchh
Q 004225 396 QSGVVARFVEFLTREDNPQLQLEAARALTNI---ASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD 472 (767)
Q Consensus 396 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 472 (767)
..-+.+.|...++..+..++ .+.++-++ .......-+...++|.|...+++.+..+|+.++..+..++..-+.
T Consensus 347 ~~~~~p~l~pi~~~~~~~~~---~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~- 422 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDPKQA---LLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV- 422 (700)
T ss_pred hhhhhHHHHHHhccCCcccc---hhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH-
Confidence 34456777777775442222 22333333 223333344556889999999999999999999999999854331
Q ss_pred HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 473 RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 473 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
..+..-+++.+-++.....+..++.+++.|+.-+.+ ..+.......+..+.+-.+..|+.+....+.+..++...
T Consensus 423 --~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 423 --PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred --HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 233445677777776578899999999999999882 234444445556666667788899999988888887744
Q ss_pred ChhHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 553 TNDKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
.... ..++...++|.++-+...+..
T Consensus 498 ~~~g-~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 498 IYSG-VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred cccc-eeeehhhhhhhhhhhhhcccc
Confidence 3332 223344688888877766554
No 240
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.08 E-value=0.079 Score=35.69 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=25.3
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceE
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEEL 48 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~ 48 (767)
++|++|+++++ .++.+++ . +..|++|+.|+++++. ++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~-l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-E-LSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-H-GTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCcccCc-h-HhCCCCCCEEEecCCC-CCCC
Confidence 57888888886 3666644 1 3578888888888774 5544
No 241
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.01 E-value=0.67 Score=50.08 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=104.1
Q ss_pred hHHHHhhccC----CCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCchhHH
Q 004225 400 VARFVEFLTR----EDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLS-SPSDDVREKAVWALGNIARSSPRDRD 474 (767)
Q Consensus 400 i~~L~~ll~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~ 474 (767)
-|...+...+ ++ +.++..|.-+|.++..-.-+.. ..-+|.++..++ +++|.+|.+|.-.++.++.......+
T Consensus 894 ~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc--~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d 970 (1128)
T COG5098 894 KPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFC--SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD 970 (1128)
T ss_pred hHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH
Confidence 3444444443 44 9999999999999887111111 134799999887 69999999999999998854333322
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh
Q 004225 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTN 554 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 554 (767)
. ....+...+ .+.+..+++.|+.++.++.-.. .....|-++.+..++.++|.++...|-..+..++....
T Consensus 971 e-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 971 E-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred H-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 2 345667777 7889999999999999987553 34567778888999999999998887777777775543
No 242
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.91 E-value=1.4 Score=42.79 Aligned_cols=101 Identities=22% Similarity=0.216 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHH
Q 004225 648 TKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL-YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLV 726 (767)
Q Consensus 648 v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l 726 (767)
....|..+|.-++.- .+.....+.+...++.+++++. ...+.++.+++.+|..++-+.. ...+.|
T Consensus 107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p-------------~N~r~F 172 (257)
T PF08045_consen 107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSP-------------ENQRDF 172 (257)
T ss_pred HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcCh-------------HHHHHH
Confidence 344566677777665 3566666778899999999995 4678999999999999987432 246789
Q ss_pred HhhchHHHHHHHhcCC--ChHHHHHHHHHHHHhcCCCc
Q 004225 727 EAAEGFKKIEDLKRHD--SNGICEKAVKILEIYWSCGV 762 (767)
Q Consensus 727 ~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~~ 762 (767)
++.+|++.+..++.+. +.+++-+..+.+--|+.++.
T Consensus 173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~ 210 (257)
T PF08045_consen 173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPET 210 (257)
T ss_pred HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccC
Confidence 9999999999998775 57799999999988877663
No 243
>PLN03150 hypothetical protein; Provisional
Probab=93.85 E-value=0.08 Score=59.86 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=60.0
Q ss_pred ceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeE
Q 004225 178 MWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKI 257 (767)
Q Consensus 178 ~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i 257 (767)
+.|.+.++. +..........+++|+.|+++++.....++.....+++|+.|+|+++.....++ .. ++++++|+.|++
T Consensus 421 ~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~-l~~L~~L~~L~L 497 (623)
T PLN03150 421 DGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ES-LGQLTSLRILNL 497 (623)
T ss_pred EEEECCCCC-ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hH-HhcCCCCCEEEC
Confidence 334444432 332223344567999999999876555555567889999999999986555554 33 467999999999
Q ss_pred ccccccchhcc
Q 004225 258 KSCDRITEIVQ 268 (767)
Q Consensus 258 ~~c~~l~~~~~ 268 (767)
+++.--..+|.
T Consensus 498 s~N~l~g~iP~ 508 (623)
T PLN03150 498 NGNSLSGRVPA 508 (623)
T ss_pred cCCcccccCCh
Confidence 98874444443
No 244
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.75 E-value=2.3 Score=41.00 Aligned_cols=136 Identities=13% Similarity=0.217 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCC----CHHHHHHHHHHHHHHHh----hhhHHHHhCCChHHHHH
Q 004225 376 QLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTRED----NPQLQLEAARALTNIAS----ENTNVVIDGGAVPIFVK 445 (767)
Q Consensus 376 ~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~----~~~~~~~~~~~l~~L~~ 445 (767)
.-.|+..++-++ ......++++.+.--|..+++..+ .+.+|..+..+++.+.+ +....+.+..++|..++
T Consensus 67 VcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 67 VCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 445667777777 444677788887777777776544 24677888888888888 56677789999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh--------cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 446 LLSSPSDDVREKAVWALGNIARSSPRDRDLVLS--------EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 446 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--------~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
.++.++.-.+.-|..++..+-.++.. .+.+.+ ..++..++..+...+++.+.++++.+...++.+.
T Consensus 147 ~me~GselSKtvAtfIlqKIL~dd~G-L~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 147 IMEFGSELSKTVATFILQKILLDDVG-LNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHSHHH-HHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHhccHHHHHHHHHHHHHHHcchhH-HHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 99999998899999999988755332 121111 1244555554557889999999999999999885
No 245
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.71 E-value=0.1 Score=35.19 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=16.2
Q ss_pred CCCEEEeccCccchhhcCchhhhccccCcEEeEcccc
Q 004225 225 NLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCD 261 (767)
Q Consensus 225 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 261 (767)
+|++|+++++ +++++++. ++++++|++|++++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSSC
T ss_pred cceEEEccCC-CCcccCch--HhCCCCCCEEEecCCC
Confidence 4555666554 34444331 2345555555555553
No 246
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.68 E-value=11 Score=41.43 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=75.5
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ChhHHH
Q 004225 480 KALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG-TNDKIQ 558 (767)
Q Consensus 480 g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~ 558 (767)
|.+..++... .+++..||..++..+..+.......+.....+....+..-+.+..+.||..|+.+|+.+-.. .++..
T Consensus 85 ~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~- 162 (892)
T KOG2025|consen 85 GTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC- 162 (892)
T ss_pred HHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-
Confidence 3455555555 78899999999999999998766777788888888888888899999999999999998733 33332
Q ss_pred HHHhcCcHHHHHHHhcCCCCCCcccchHHHHH
Q 004225 559 AVIEADVCPRLVKLLLHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 559 ~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L 590 (767)
.+...++.++++... .+|+..|+..+
T Consensus 163 -----~v~n~l~~liqnDpS-~EVRRaaLsnI 188 (892)
T KOG2025|consen 163 -----PVVNLLKDLIQNDPS-DEVRRAALSNI 188 (892)
T ss_pred -----cHHHHHHHHHhcCCc-HHHHHHHHHhh
Confidence 245556666665432 36666665544
No 247
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=1.3 Score=46.94 Aligned_cols=129 Identities=20% Similarity=0.196 Sum_probs=93.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchh
Q 004225 442 IFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVR 521 (767)
Q Consensus 442 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~ 521 (767)
.+-+++.+.++-+|...+.+++.--.++. +.|++..++..--++.+.+++++|+-+|+-+|..++.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence 55667778888899888887775544433 3457788888733888999999999999999987643
Q ss_pred chHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 522 PALPALAQLVH-SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 522 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
.++..++++. +-+..+|...+.+|+-.|.+...+. ....|-.++.+... -|+..|+-+++.+.
T Consensus 586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~d--fVRQ~AmIa~~mIl 649 (926)
T COG5116 586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTND--FVRQSAMIAVGMIL 649 (926)
T ss_pred -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHH--HHHHHHHHHHHHHH
Confidence 4555666665 5568889888888988887765433 23345556666666 77778888777776
No 248
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.26 E-value=6.5 Score=41.21 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=102.4
Q ss_pred HHh-CCChHHHHHhhCCC---CHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-c--CCChHHHHHHHHHHH
Q 004225 434 VID-GGAVPIFVKLLSSP---SDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-K--HAKPSMLRNATKTLS 506 (767)
Q Consensus 434 ~~~-~~~l~~L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~--~~~~~~~~~~~~~L~ 506 (767)
+++ ......|..++++. .+.+-..|+.++..+....|..-..+.+.|.++.+++.+. + -++.++....-.+++
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 44555666677663 4788899999999999999998899999999999999994 1 256788888888999
Q ss_pred hhcCCCCCCCccchhchHHHHHHHhcCCC-------HHHHHHHHHHHHhhccCChhHHHHHHhc--CcHHHHHHHhcC
Q 004225 507 RFCQGKPEPPFDQVRPALPALAQLVHSND-------NDVLRYACEALSCLSDGTNDKIQAVIEA--DVCPRLVKLLLH 575 (767)
Q Consensus 507 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~L~~lL~~ 575 (767)
.+|-+....+.+...+.++.++.++.+.+ .+.....-..+-.|.++.+.....+++. .++..+..+-..
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g~~ 258 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVELGKD 258 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99988766677777889999998887654 1344445556667888887665555442 234444444443
No 249
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.18 E-value=2.6 Score=38.69 Aligned_cols=139 Identities=22% Similarity=0.251 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHh--hh------hHHHHh------CCChHHHHH-hhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc
Q 004225 415 LQLEAARALTNIAS--EN------TNVVID------GGAVPIFVK-LLSSPSDDVREKAVWALGNIARSSPRDRDLVLSE 479 (767)
Q Consensus 415 ~~~~a~~~L~~l~~--~~------~~~~~~------~~~l~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 479 (767)
+|..|..+|..++. +. -..++- .+.-+.|+. ++.++++.+|..|+.++..+-++...+-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 56667777777766 11 111221 123334444 5667889999999999998886654333222211
Q ss_pred C-------------------CHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC--CccchhchHHHHHHHhcCCCHHH
Q 004225 480 K-------------------ALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP--PFDQVRPALPALAQLVHSNDNDV 538 (767)
Q Consensus 480 g-------------------~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~--~~~~~~~~i~~L~~ll~~~~~~v 538 (767)
. .-..|+..+....+..+...++.++..+....|.. +......++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 12344555545567888889999999999887654 44455677777778888999999
Q ss_pred HHHHHHHHHhhccCC
Q 004225 539 LRYACEALSCLSDGT 553 (767)
Q Consensus 539 ~~~a~~~L~~l~~~~ 553 (767)
+..++.++..+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999988877543
No 250
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.13 E-value=0.52 Score=35.63 Aligned_cols=55 Identities=20% Similarity=0.111 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHHh
Q 004225 649 KKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL-YADPEIVTICLKGLENILKV 705 (767)
Q Consensus 649 ~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~ 705 (767)
.+.|.|+++|+++ ++.....+.+.++++.++++.+ ++...+|-.+..+|.-+...
T Consensus 4 lKaaLWaighIgs--s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGS--SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhc--ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 5789999999998 4788888888899999999988 46778888899999888853
No 251
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=93.09 E-value=16 Score=39.88 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=36.2
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHH-c--CCHHHHHHHHhcCCchhHHHHHHHHHHhhc
Q 004225 605 GIAKEACRTISNITAGNREQIQVVID-A--GVIGPLVDLLQNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~-~--~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~ 661 (767)
.+.+.|+..++.+..+..+...+-+. . -+++.+...++.++..+-.+....+.++..
T Consensus 271 ~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 271 NVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 55567777777666544222211111 1 267888888888888888888888888773
No 252
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.07 E-value=5.5 Score=42.29 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=115.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCC----ChHHHHHHHHHHHhhcCCCCCC
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHA----KPSMLRNATKTLSRFCQGKPEP 515 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~----~~~~~~~~~~~L~~l~~~~~~~ 515 (767)
...+.+.+.+++...+..|...+..++.+ +.....++...++..|.+++. ++ ..++...++.+++.+-...-..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~lie-dg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIE-DGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHH-cCccchHHHHHHHHHHHHHHHHhhceee
Confidence 35677888888888888899999999866 567777888899999999994 43 3567777888887776665322
Q ss_pred CccchhchHHHHHHHh--cCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 516 PFDQVRPALPALAQLV--HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 516 ~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
-......++-....+. +..+..+...|+..+.++.-+++...+.+.+.--+..++..++..+. .++..|+..+..+
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~--~i~~~aial~nal 240 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ--RIQTCAIALLNAL 240 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch--HHHHHHHHHHHHH
Confidence 2222233333333333 34567788899999999998888777778777789999999999998 9999999888888
Q ss_pred hccCC
Q 004225 594 VKGDG 598 (767)
Q Consensus 594 ~~~~~ 598 (767)
....+
T Consensus 241 ~~~a~ 245 (713)
T KOG2999|consen 241 FRKAP 245 (713)
T ss_pred HhhCC
Confidence 75544
No 253
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.00 E-value=1.8 Score=45.98 Aligned_cols=235 Identities=13% Similarity=0.119 Sum_probs=132.5
Q ss_pred HHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCC
Q 004225 394 VIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSS 469 (767)
Q Consensus 394 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~ 469 (767)
.+....+..|+.++.++| +..|.....+|.++.. ..+..+. ..+...+.+++.. ....-...++.+++.+..+.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf 206 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERHNGIAELLEILGSIINGF 206 (409)
T ss_dssp TS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-
T ss_pred HcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc
Confidence 556677889999999999 9999999999999887 3444433 3456677777764 45566677889999998764
Q ss_pred chhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 004225 470 PRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCL 549 (767)
Q Consensus 470 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 549 (767)
...-+.....-....++.+.....-.........++..+...++. ....++..++..=-..+..-....+.-+..+
T Consensus 207 ~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 207 AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp -SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 421111111112233444442222233455566666666655432 2333444444444455555555556666666
Q ss_pred ccCCh-hHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHH
Q 004225 550 SDGTN-DKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVV 628 (767)
Q Consensus 550 ~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~ 628 (767)
...-+ +....+. ..+...+.+.+.+.+. .|.+.|+..+.| +..-.+
T Consensus 283 l~~~~~~~f~~i~-~~lf~~la~ci~S~h~--------------------------qVAErAl~~w~n------~~~~~l 329 (409)
T PF01603_consen 283 LEVLPPEEFQKIM-VPLFKRLAKCISSPHF--------------------------QVAERALYFWNN------EYFLSL 329 (409)
T ss_dssp HTT--HHHHHHHH-HHHHHHHHHHHTSSSH--------------------------HHHHHHHGGGGS------HHHHHH
T ss_pred HHhcCHHHHHHHH-HHHHHHHHHHhCCCCH--------------------------HHHHHHHHHHCC------HHHHHH
Confidence 65433 3333232 3477778888888887 444444444332 111122
Q ss_pred HHc---CCHHHHHHHHhcC-----CchhHHHHHHHHHHhhcCCCHHHH
Q 004225 629 IDA---GVIGPLVDLLQNA-----EFFTKKEAARAISNAISGGTHEQI 668 (767)
Q Consensus 629 ~~~---~~i~~L~~ll~~~-----~~~v~~~a~~~L~nl~~~~~~~~~ 668 (767)
+.. .++|.+...+... +..|+..|..++.-+... +++..
T Consensus 330 i~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~-d~~lf 376 (409)
T PF01603_consen 330 ISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM-DPKLF 376 (409)
T ss_dssp HHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT-SHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-CHHHH
Confidence 222 2567777776542 567888888888877765 45543
No 254
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.94 E-value=0.034 Score=52.89 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=66.6
Q ss_pred cccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEV 278 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 278 (767)
...|+.|.+.++...+ ......+|+|++|.++....-........+..+|+|++|++++.. +..+..-.. .
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p------l 112 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP------L 112 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch------h
Confidence 4667777777765433 224456789999999776222222122234567999999998754 222211110 1
Q ss_pred ccccccceEeecCCCCccccc--CCCccccCCccceEeecCCCCc
Q 004225 279 ITFRELKELKLVDLERLTSFC--SGNCAFKFPSLERLVVDDCPDM 321 (767)
Q Consensus 279 ~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~i~~c~~l 321 (767)
..+++|..|.+.+|+..+ +- .......+|+|++|+-.++..-
T Consensus 113 ~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence 117788888888887554 11 0112346799999988777543
No 255
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=7.8 Score=42.52 Aligned_cols=182 Identities=16% Similarity=0.100 Sum_probs=119.1
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHh--------hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCch
Q 004225 400 VARFVEFLTREDNPQLQLEAARALTNIAS--------ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPR 471 (767)
Q Consensus 400 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 471 (767)
=|.|..-|+..+ ..+|..|+..+.+..- +..+.+++. -...+..+|+++-+.+|..|...+..+.+...+
T Consensus 176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 355666677777 7999999999998876 223444443 256788899999999999999999888864333
Q ss_pred hHHHHHhcCCHHHHHHH----HccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 004225 472 DRDLVLSEKALIPLLAQ----LNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALS 547 (767)
Q Consensus 472 ~~~~~~~~g~i~~L~~l----l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 547 (767)
++....+..++.. +..+...++|......+-.+...+ .. .-....++|.+-..+.++.+.||.++...+.
T Consensus 254 ----~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np-~s-h~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 254 ----MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP-LS-HPLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred ----HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc-cc-hhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 2233333333333 334455688888888888777664 21 2233456677777888999999999999998
Q ss_pred hhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 548 CLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 548 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
.+-.........+ --...++..|..++. .+....+..+.+..
T Consensus 328 ~ik~vra~~f~~I---~~~d~~l~~L~~d~~--~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 328 KIKAVRAAKFWKI---CPMDHILVRLETDSR--PVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHhhhhhhhhcc---ccHHHHHHHHhcccc--HHHHHHHHHHHHhh
Confidence 8765533222222 234556666666665 55555555555544
No 256
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=92.83 E-value=4.5 Score=44.44 Aligned_cols=257 Identities=11% Similarity=0.073 Sum_probs=158.3
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHHhcCCchhHHHHHhcCCHH
Q 004225 405 EFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPS-DDVREKAVWALGNIARSSPRDRDLVLSEKALI 483 (767)
Q Consensus 405 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 483 (767)
+-++-.+ .+.+..=..-|.+......+.++...++|.|+..+...+ ..-....+..++......+ .+.++++
T Consensus 261 eel~lks-~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e------yq~~i~p 333 (690)
T KOG1243|consen 261 EELRLKS-VEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEE------YQVRIIP 333 (690)
T ss_pred HhcccCc-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccc------cccchhh
Confidence 3344444 455554445555533334455555667788877776655 1111222223333332222 4566889
Q ss_pred HHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhc
Q 004225 484 PLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEA 563 (767)
Q Consensus 484 ~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 563 (767)
.+++++ ...|..+|-..+.-+-++... ..+.+....++|.+...+.++++.+|+.++.++..++..-..+ ....
T Consensus 334 ~l~kLF-~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~---~Ln~ 407 (690)
T KOG1243|consen 334 VLLKLF-KSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR---NLNG 407 (690)
T ss_pred hHHHHh-cCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh---hhcH
Confidence 999999 888888888877777666654 3455667789999999999999999999999988887543222 2222
Q ss_pred CcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCC-HHHHHHHHh
Q 004225 564 DVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGV-IGPLVDLLQ 642 (767)
Q Consensus 564 ~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~-i~~L~~ll~ 642 (767)
..+..+.++-.+.+. .++.+..-+++-++ ... +.....++ +....+.++
T Consensus 408 Ellr~~ar~q~d~~~--~irtntticlgki~------------------------~~l----~~~~R~~vL~~aftralk 457 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHG--GIRTNTTICLGKIA------------------------PHL----AASVRKRVLASAFTRALK 457 (690)
T ss_pred HHHHHHHhhCccccC--cccccceeeecccc------------------------ccc----chhhhccccchhhhhhhc
Confidence 355555555555555 55555554444443 211 11112223 344555677
Q ss_pred cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhh
Q 004225 643 NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 643 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 708 (767)
++-...|..+.+++........... +...+++.++-+.-+.+..++..|-.++.......+.
T Consensus 458 dpf~paR~a~v~~l~at~~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 458 DPFVPARKAGVLALAATQEYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred CCCCCchhhhhHHHhhcccccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 7777888888888876655322111 3345778888888888889999999888887765443
No 257
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.79 E-value=3.5 Score=43.22 Aligned_cols=196 Identities=16% Similarity=0.208 Sum_probs=120.8
Q ss_pred HHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC-CCCccchh-chHHHHHHHhcCC
Q 004225 457 KAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP-EPPFDQVR-PALPALAQLVHSN 534 (767)
Q Consensus 457 ~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-~~~~~~~~-~~i~~L~~ll~~~ 534 (767)
.|+.+|-.+....+.....+.+.+++..+++.+ ..+-...++. .-...-....+ ........ .-+ .-.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl-~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i-------~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRL-QYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSI-------SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHH-HHHHHHHHhc--ccccCCCCCCCCCccccccccccc-------CHH
Confidence 466777777777667777888999999999999 2221111110 00000001101 00000000 000 111
Q ss_pred CHHHHHHHHHHHHhhcc---CChhHHHHHHh-cCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHH
Q 004225 535 DNDVLRYACEALSCLSD---GTNDKIQAVIE-ADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEA 610 (767)
Q Consensus 535 ~~~v~~~a~~~L~~l~~---~~~~~~~~~~~-~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a 610 (767)
.....+..+..+..+.. +..+..+-+++ ......|...+++.... .. .+...|
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~F-----------------G~------~v~s~a 129 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVF-----------------GP------SVFSLA 129 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCcccc-----------------ch------HHHHHH
Confidence 12344555555555555 23334444555 55667777777766430 00 566677
Q ss_pred HHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh-cC---CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC
Q 004225 611 CRTISNITAGNREQIQVVIDAGVIGPLVDLLQ-NA---EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY 686 (767)
Q Consensus 611 ~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~---~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~ 686 (767)
+.++..+....|.....+.++|+++.+++.+. .. +.++-...-.+++.++. +.+..+.+.+.+.++.+++++.+
T Consensus 130 ~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 130 INIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCC
Confidence 88888888888888888999999999999998 43 45666666677777777 58899999999999999998875
Q ss_pred C
Q 004225 687 A 687 (767)
Q Consensus 687 ~ 687 (767)
+
T Consensus 208 ~ 208 (379)
T PF06025_consen 208 P 208 (379)
T ss_pred H
Confidence 4
No 258
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=92.78 E-value=0.82 Score=49.88 Aligned_cols=186 Identities=13% Similarity=0.126 Sum_probs=127.9
Q ss_pred HhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 004225 395 IQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRD 474 (767)
Q Consensus 395 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 474 (767)
.+.+++|.++++++..| ..+|..-+.-+-++.....+.+++..++|.+..-+.+.|+.+|++++.++..++.--. .
T Consensus 327 yq~~i~p~l~kLF~~~D-r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~---~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPD-RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS---K 402 (690)
T ss_pred cccchhhhHHHHhcCcc-hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc---h
Confidence 66789999999999999 7888876666666665556677788899999999999999999999999999884211 1
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCCccchhch-HHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPA-LPALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
..+....++.+-.+- .+++..+|-+..-+++.++... +.. ..++ +..+.+-+.++-...|.++.+++......
T Consensus 403 ~~Ln~Ellr~~ar~q-~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 403 RNLNGELLRYLARLQ-PDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred hhhcHHHHHHHHhhC-ccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 122222344444433 5667788888888888887664 222 1222 22233344555577788888888777655
Q ss_pred ChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 553 TNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
.+...- ...++|.++-+.-+.+. .++..|..++...-
T Consensus 478 ~~~~~v---a~kIlp~l~pl~vd~e~--~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 478 FDQSEV---ANKILPSLVPLTVDPEK--TVRDTAEKAIRQFL 514 (690)
T ss_pred cchhhh---hhhccccccccccCccc--chhhHHHHHHHHHH
Confidence 442221 23588888888888887 78877777665554
No 259
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.67 E-value=0.0055 Score=66.09 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=33.0
Q ss_pred ccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEcccc
Q 004225 200 NNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCD 261 (767)
Q Consensus 200 ~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 261 (767)
..|..|.|+|. .+++ ..++..+.+|..|+++..- +.+-........+.+|..|++.+.|
T Consensus 232 c~L~~L~lrnN-~l~t-L~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 232 CKLQLLNLRNN-ALTT-LRGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhheeeeeccc-HHHh-hhhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 44777777763 3333 2345667788888886532 1111122223346677777777655
No 260
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.57 E-value=14 Score=38.08 Aligned_cols=160 Identities=17% Similarity=0.128 Sum_probs=107.1
Q ss_pred HHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHc-C-CHHHHHHHHhc
Q 004225 566 CPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDA-G-VIGPLVDLLQN 643 (767)
Q Consensus 566 ~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~-~-~i~~L~~ll~~ 643 (767)
+..+.+.|..... .+..++++.+..++.- .+......+++. + -.+.+.+++..
T Consensus 58 ~k~lyr~L~~~~~--~~~~~~LrLL~~iv~f-----------------------~~g~~a~~v~~~fd~~~~~l~kll~~ 112 (330)
T PF11707_consen 58 LKLLYRSLSSSKP--SLTNPALRLLTAIVSF-----------------------DGGALAREVLRSFDFSLKSLPKLLTP 112 (330)
T ss_pred HHHHHHHhCcCcH--HHHHHHHHHHHHHHcc-----------------------CCHHHHHHHHHhcCCchhhHHHHhcc
Confidence 6778888888877 5555555555555431 333333334332 1 12334444432
Q ss_pred C-----C--------chhHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 004225 644 A-----E--------FFTKKEAARAISNAISGGTHEQIKYLVR-KGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAE 709 (767)
Q Consensus 644 ~-----~--------~~v~~~a~~~L~nl~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~ 709 (767)
. . +.+|...+..+..+...+++.....+++ .+.+..+.+-+..+.+++....+.++..-+-..+..
T Consensus 113 ~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v 192 (330)
T PF11707_consen 113 RKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSV 192 (330)
T ss_pred ccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCC
Confidence 1 1 2889898888888887778888877776 567888888888888999999999999655433322
Q ss_pred hccCCccccccHHHHHHHhhchHHHHHHHhcCCCh----HHHHHHHHHHHHhcC
Q 004225 710 MNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSN----GICEKAVKILEIYWS 759 (767)
Q Consensus 710 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~----~v~~~a~~~l~~~~~ 759 (767)
+ ...+..+-....+.+|..+-..+++ .+.+.|.+.+..+..
T Consensus 193 ~---------r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 193 S---------RSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred C---------hhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 2 1234444577789999998888888 899999999987664
No 261
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.52 E-value=6.3 Score=41.12 Aligned_cols=180 Identities=9% Similarity=0.017 Sum_probs=109.4
Q ss_pred CCChHHHHHHHHHHHhhcCCCCC-CCccchhchHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHH
Q 004225 492 HAKPSMLRNATKTLSRFCQGKPE-PPFDQVRPALPALAQLVHS-NDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRL 569 (767)
Q Consensus 492 ~~~~~~~~~~~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 569 (767)
++..+-++.|+.-|..+...... .-......++..++..+.+ .+...++-|+++|..++...+.....-.+ -++..+
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~ 376 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKV 376 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHH
Confidence 33444555566645444444322 2223345667777888876 77889999999999999887644332211 234445
Q ss_pred HHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhh-hccCCHHHHHHHHHcCCHHHHHHHHhcCCchh
Q 004225 570 VKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISN-ITAGNREQIQVVIDAGVIGPLVDLLQNAEFFT 648 (767)
Q Consensus 570 ~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~n-l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 648 (767)
++.-.+.+. + +...|...... ++...+.. -|..+..++...+...
T Consensus 377 Leaa~ds~~--~------------------------v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~ 422 (516)
T KOG2956|consen 377 LEAAKDSQD--E------------------------VMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPR 422 (516)
T ss_pred HHHHhCCch--h------------------------HHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchH
Confidence 555455544 2 22222222211 22222221 1334455555567777
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 004225 649 KKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 649 ~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 707 (767)
-..+...+..+....+.+...-++ .++.+.+++-..+....||+.|..+|-.+....+
T Consensus 423 ~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 423 AVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 777777888888876666544433 4689999999999999999999999988876543
No 262
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.45 E-value=1.3 Score=39.97 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHH
Q 004225 533 SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACR 612 (767)
Q Consensus 533 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~ 612 (767)
...++++..+.-++..+.+. ..+.+ ...+-+.+-..+...+. +-...++.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~---~~~~~-~~~~~~~i~~~~~~~~~--------------------------d~~i~~~~ 65 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDA---AREEF-KEKISDFIESLLDEGEM--------------------------DSLIIAFS 65 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHCCHHC--------------------------CHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHH---hHHHH-HHHHHHHHHHHHccccc--------------------------hhHHHHHH
Confidence 45677888888888887422 22211 12234445555555555 34456666
Q ss_pred HHhhhccCCHHHHHHHH-HcCCHHHHHHHHh--cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc-CCC
Q 004225 613 TISNITAGNREQIQVVI-DAGVIGPLVDLLQ--NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL-YAD 688 (767)
Q Consensus 613 ~l~nl~~~~~~~~~~~~-~~~~i~~L~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~ 688 (767)
++..+.-..++....++ ..|+++.+..++. ..+..++..++.++..-+.+ +.++..+...+++.|.++++ +++
T Consensus 66 ~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~ 142 (157)
T PF11701_consen 66 ALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKD 142 (157)
T ss_dssp HHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-
T ss_pred HHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccc
Confidence 66667777777666665 6688899999999 77788888888888876653 44455566678999999996 455
Q ss_pred HH-HHHHHHHHHHH
Q 004225 689 PE-IVTICLKGLEN 701 (767)
Q Consensus 689 ~~-v~~~al~aL~~ 701 (767)
.. ++..|+-+|..
T Consensus 143 ~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 143 DSEIRVLAAVGLCK 156 (157)
T ss_dssp HH-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc
Confidence 55 77777766654
No 263
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.18 E-value=5.2 Score=41.68 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=93.7
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHh------hhhHHHHhCCChHHHHHhhCCC-------CHHHHHHHHHHHHHHhcCC
Q 004225 403 FVEFLTREDNPQLQLEAARALTNIAS------ENTNVVIDGGAVPIFVKLLSSP-------SDDVREKAVWALGNIARSS 469 (767)
Q Consensus 403 L~~ll~~~~~~~~~~~a~~~L~~l~~------~~~~~~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~L~nl~~~~ 469 (767)
+..+....+ ...|.+|.-..++... .+++.+++.-+.+.+-+++.+. |.-.+.-++.+|..++.+
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~- 93 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV- 93 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence 455566666 5778888888888888 4567788888889998888752 233455566777777755
Q ss_pred chhH--HHHHhcCCHHHHHHHHccCCChH------HHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCC
Q 004225 470 PRDR--DLVLSEKALIPLLAQLNKHAKPS------MLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSND 535 (767)
Q Consensus 470 ~~~~--~~~~~~g~i~~L~~ll~~~~~~~------~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~ 535 (767)
++.. ..++ +.|+.+.+++.+..+++ +.+.+-.+|..++...+........|+++.+.++..-.+
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence 4322 2233 37899999996555555 888899999999988777788888999999988776443
No 264
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=92.00 E-value=27 Score=40.06 Aligned_cols=90 Identities=11% Similarity=0.083 Sum_probs=65.0
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC-CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhh
Q 004225 605 GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA-EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDL 683 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~l 683 (767)
.++..+.-++++++-......+ ..+|.+++-|+.. ...+|.+.+.+.+.++... . .+++ ..++.+...
T Consensus 946 ~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y--T---am~d-~YiP~I~~~ 1014 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY--T---AMTD-RYIPMIAAS 1014 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH--H---HHHH-HhhHHHHHH
Confidence 5566667777777764444333 3688888888754 4577887777777777641 1 1222 368889999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHh
Q 004225 684 LLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 684 l~~~~~~v~~~al~aL~~l~~~ 705 (767)
|.++++-||.+++..|.++++.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999974
No 265
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.95 E-value=25 Score=39.49 Aligned_cols=281 Identities=14% Similarity=0.037 Sum_probs=143.4
Q ss_pred HHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCc
Q 004225 393 KVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVKLLSSP-SDDVREKAVWALGNIARSSP 470 (767)
Q Consensus 393 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~ 470 (767)
.-.....+|-+. ...++..-+|+..+|.++.-.+ +...... .-+-..++.++++. |.-++..++.++.-...+-.
T Consensus 483 ~Wl~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k-~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n 559 (978)
T KOG1993|consen 483 KWLQEALLPELA--NDHGNSRIIRRRVAWILGQWVSVQQKLELK-PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN 559 (978)
T ss_pred HHHHHhhCHHhh--hcccchhHHHHHHHHHHhhhhheechHhHH-HHHHHHHHHhcCccccceeehHHHHHHHHhhhhcc
Confidence 333434444443 2233336789999999999988 2222211 12345788899885 77888999999998886544
Q ss_pred hhHHHHHh--cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhc--CCCHHHHHHHHHH
Q 004225 471 RDRDLVLS--EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVH--SNDNDVLRYACEA 545 (767)
Q Consensus 471 ~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~ 545 (767)
-..+.+.. ......+.+++...+.-+.+..++.+++.+...- +... -....++..+-.+=. .+.+-.+.+.+.+
T Consensus 560 F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~-P~~~~ivq~lp~LWe~s~~e~lLr~alL~~ 638 (978)
T KOG1993|consen 560 FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA-PYASTIVQYLPLLWEESEEEPLLRCALLAT 638 (978)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhhhccCcHHHHHHHHH
Confidence 33333332 2344555566645566677888888888776442 2111 111122222211111 2334456666667
Q ss_pred HHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHH
Q 004225 546 LSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQI 625 (767)
Q Consensus 546 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~ 625 (767)
+.|+...-........ .+.-.++++-.+.+.++.+.... +--.--...++|.-.-.++..
T Consensus 639 L~~lV~alg~qS~~~~--~fL~pVIel~~D~~sP~hv~L~E------------------DgmeLW~~~L~n~~~l~p~ll 698 (978)
T KOG1993|consen 639 LRNLVNALGAQSFEFY--PFLYPVIELSTDPSSPEHVYLLE------------------DGMELWLTTLMNSQKLTPELL 698 (978)
T ss_pred HHHHHHHhccCCccch--HHHHHHHHHhcCCCCCceeehhh------------------hHHHHHHHHHhcccccCHHHH
Confidence 7776533111111000 12233333333332211110000 111111223444433333332
Q ss_pred HHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 626 QVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 626 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
+.+|.+...+......++......=+.+... +....+ ....|+++.+.+++.+-..+-..+.+.++..+++.
T Consensus 699 ------~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd-~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t 770 (978)
T KOG1993|consen 699 ------LLFPHLLYIIEQSTENLPTVLMIISSYILLD-NTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT 770 (978)
T ss_pred ------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc-cHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 2567777777766555544322222222332 233222 23457889999999877777777778888777764
No 266
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.87 E-value=0.21 Score=45.64 Aligned_cols=106 Identities=14% Similarity=0.224 Sum_probs=61.7
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccc--cccccccCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDL--EKFTSFCTG 84 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~ 84 (767)
+...++|.+.. +..+ ..++.++.|..|.+.++. +..+-. .-...+|+|..|.+.+. ..+.++..
T Consensus 43 ~~d~iDLtdNd-l~~l---~~lp~l~rL~tLll~nNr-It~I~p--------~L~~~~p~l~~L~LtnNsi~~l~dl~p- 108 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKL---DNLPHLPRLHTLLLNNNR-ITRIDP--------DLDTFLPNLKTLILTNNSIQELGDLDP- 108 (233)
T ss_pred ccceecccccc-hhhc---ccCCCccccceEEecCCc-ceeecc--------chhhhccccceEEecCcchhhhhhcch-
Confidence 34455666543 2222 223678888888887764 554411 11234788999998873 23333322
Q ss_pred CCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCc
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAK 129 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 129 (767)
..+||.|+.|.+-+.+.-...---.+....+|+|+.||...-
T Consensus 109 ---La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 ---LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ---hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 457899999998776643322111122246899999987753
No 267
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.76 E-value=27 Score=39.45 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=81.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCC-CHHHHHHHHHHHHHHHh-h------hhH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED-NPQLQLEAARALTNIAS-E------NTN 432 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-~------~~~ 432 (767)
++..+..--+++|.++..|-++|+.+- -+.|..-.+++++..++ ++.+|..|+..+.|..+ . ...
T Consensus 7 l~~~l~qTl~pdps~rk~aEr~L~~~e-------~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 7 LANYLLQTLSPDPSVRKPAERALRSLE-------GQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHHHHhcCCCCCccCchHHHHHHHhc-------cCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 333333334677888888888888755 12334445666666554 58899999999999988 1 112
Q ss_pred HHHhC--CChH-HHHHhhCCCCHHHHHHHHHHHHHHhc-CCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhh
Q 004225 433 VVIDG--GAVP-IFVKLLSSPSDDVREKAVWALGNIAR-SSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRF 508 (767)
Q Consensus 433 ~~~~~--~~l~-~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 508 (767)
.+.+. ..+. .++.++-+....++.+--.+++-++. +.|+-... .++.|+..+ ++.|-.+...++.+-..+
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWpt-----Ll~dL~~~l-s~~D~~~~~gVL~tahsi 153 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPT-----LLPDLVARL-SSGDFNVINGVLVTAHSI 153 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHH-----HHHHHHhhc-cccchHHHHHHHHHHHHH
Confidence 23222 1222 34555556667889998899998883 44433332 456677777 555555555555444433
No 268
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=91.75 E-value=3.1 Score=35.22 Aligned_cols=89 Identities=13% Similarity=0.226 Sum_probs=62.7
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHH-hhchHH
Q 004225 655 AISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVE-AAEGFK 733 (767)
Q Consensus 655 ~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~ 733 (767)
-|++++.. ++..... +++.|.+-|++.++.|+.+++..|..++..+... +...++ ..-.+.
T Consensus 24 Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~~~~~~~~~Ik 85 (122)
T cd03572 24 EIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKRELQRNSAQIR 85 (122)
T ss_pred HHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHHHHHHhHHHHH
Confidence 45555554 4444444 6778888888899999999999999999876533 333333 334455
Q ss_pred HHHHHhcC--------CChHHHHHHHHHHHHhcCCC
Q 004225 734 KIEDLKRH--------DSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 734 ~l~~l~~~--------~~~~v~~~a~~~l~~~~~~~ 761 (767)
.+.++... ++..|+..|.+++.-+|..+
T Consensus 86 ~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 86 ECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 55655542 34569999999999999876
No 269
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.58 E-value=3.8 Score=43.47 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=110.6
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCC----HHHHHHHHHHHHhhccCChhHH
Q 004225 482 LIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSND----NDVLRYACEALSCLSDGTNDKI 557 (767)
Q Consensus 482 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~ 557 (767)
...+.+.+ .+++...+..++..+..++.+...........++..|.+++.+.+ .++....+.+++.+.++.--..
T Consensus 85 a~~i~e~l-~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEIL-TEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHH-hCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 45666777 677777777788888888877655555556677888888888665 4677777777777766543211
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHH
Q 004225 558 QAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPL 637 (767)
Q Consensus 558 ~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L 637 (767)
.. ....++..++.+....-. +. .+...|+..+-+++.+++...+.+.+.--+..+
T Consensus 164 ~~-~~~~fV~~~a~~V~~~~~------------------~a------~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~l 218 (713)
T KOG2999|consen 164 ES-VSNDFVVSMASYVNAKRE------------------DA------NTLLAALQMLESLVLGSDTLRQLVAEEVPIETL 218 (713)
T ss_pred ee-cccHHHHHHHHHHhhhhh------------------cc------cchHHHHHHHHHHHhCChHHHHHHHhcCcHHHH
Confidence 11 112233344444322211 00 556677777777777777777878888889999
Q ss_pred HHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHH
Q 004225 638 VDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLV 672 (767)
Q Consensus 638 ~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~ 672 (767)
+..++..+..++..|...+..+...+.++....+.
T Consensus 219 i~hlq~~n~~i~~~aial~nal~~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 219 IRHLQVSNQRIQTCAIALLNALFRKAPDDKRFEMA 253 (713)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHhhCChHHHHHHH
Confidence 99999999999999887777777766555444443
No 270
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=3.2 Score=43.48 Aligned_cols=171 Identities=12% Similarity=0.092 Sum_probs=95.3
Q ss_pred HHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCC
Q 004225 498 LRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPL 577 (767)
Q Consensus 498 ~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~ 577 (767)
+..-...+..+.......+......++..+..-..+++..++..|+++|.|.+...++....... ..+..++.-|-+++
T Consensus 234 ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~ 312 (533)
T KOG2032|consen 234 RITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDL 312 (533)
T ss_pred hHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCC
Confidence 33344444555544323333334445555555556778899999999999999886655543332 34555665555544
Q ss_pred CCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHH
Q 004225 578 PFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAIS 657 (767)
Q Consensus 578 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 657 (767)
. .+|+..|+.+|.-+...- .+.+...+++ ++.-.+..+.++.++++|..|...++
T Consensus 313 ~-~~V~leam~~Lt~v~~~~----------------------~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg 367 (533)
T KOG2032|consen 313 N-EEVQLEAMKCLTMVLEKA----------------------SNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFG 367 (533)
T ss_pred c-cHHHHHHHHHHHHHHHhh----------------------hhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHH
Confidence 3 255555555554443100 0111111111 24456777788899999999998888
Q ss_pred HhhcCCCHHHHHHHHH--cCChHHHHhhhcCCCHHHHHH
Q 004225 658 NAISGGTHEQIKYLVR--KGCIKPLCDLLLYADPEIVTI 694 (767)
Q Consensus 658 nl~~~~~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~ 694 (767)
.++.-........+.+ .+...++...+.+.+|.+..+
T Consensus 368 ~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A 406 (533)
T KOG2032|consen 368 ALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA 406 (533)
T ss_pred HHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH
Confidence 8874322222222222 234555666677778766443
No 271
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.31 E-value=0.27 Score=52.56 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=24.1
Q ss_pred CCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccc
Q 004225 218 PPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDR 262 (767)
Q Consensus 218 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 262 (767)
.....++++++|+++++ .+.++.. ...+.+|+.|++++-..
T Consensus 249 ~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 249 ESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSL 289 (394)
T ss_pred chhccccccceeccccc-ccccccc---ccccCccCEEeccCccc
Confidence 34456666777777654 3444432 34567777777766443
No 272
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=91.26 E-value=17 Score=36.10 Aligned_cols=207 Identities=10% Similarity=0.050 Sum_probs=133.6
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc--CCHHHHHHHHccCC-ChHHHHHHHHHHHhhc
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSE--KALIPLLAQLNKHA-KPSMLRNATKTLSRFC 509 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l~ 509 (767)
.+.++|.+..+++.+...+-+-+..++.+..|+-......+...++. .-.+.+-.++.... .+++.-+|-..+....
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECI 153 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 46678999999999999888888888888888874332222111111 12233333332222 3566656666666655
Q ss_pred CCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCc----HHHHHHHhcCCCCCCcccch
Q 004225 510 QGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADV----CPRLVKLLLHPLPFPFGLTP 585 (767)
Q Consensus 510 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----~~~L~~lL~~~~~~~~v~~~ 585 (767)
+...-.+.+..+.-.......++.+.-++...|..+...+.......+..+...+. .+.--.++.+.+. -++..
T Consensus 154 rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Ny--vtkrq 231 (342)
T KOG1566|consen 154 RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENY--VTKRQ 231 (342)
T ss_pred hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccce--ehHHH
Confidence 55444455555666677777778888889999999988877554445554544432 4446778888888 66666
Q ss_pred HHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcC
Q 004225 586 PLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISG 662 (767)
Q Consensus 586 a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~ 662 (767)
++..++.+..+.+ +.....+++-+..-+..++.+|+.++..+|-+|.....-++..
T Consensus 232 s~kllg~llldr~---------------------N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 232 SLKLLGELLLDRS---------------------NSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHhHHHHHhCCC---------------------cHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 6666666653322 1222333444445678899999999999999999888777663
No 273
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.22 E-value=32 Score=39.81 Aligned_cols=183 Identities=15% Similarity=0.224 Sum_probs=109.2
Q ss_pred HhcCchHHHHhhccCCCC----HHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhhC----CCC----HHHHHHHHH
Q 004225 395 IQSGVVARFVEFLTREDN----PQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLLS----SPS----DDVREKAVW 460 (767)
Q Consensus 395 ~~~g~i~~L~~ll~~~~~----~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~----~~~----~~v~~~a~~ 460 (767)
.+.|++..++.++.+-.+ ...-......|..++. .+++.+++.|+++.|+..+. .+. .++.++.+.
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 456778888877765331 3444455666666666 88999999999999998774 333 677777777
Q ss_pred HHHHHhcCCchhHH----HHHhc--------CCHHHHHHHHcc---CCChHHHHHHHHHHHhhcCCCCCCCccchhchHH
Q 004225 461 ALGNIARSSPRDRD----LVLSE--------KALIPLLAQLNK---HAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALP 525 (767)
Q Consensus 461 ~L~nl~~~~~~~~~----~~~~~--------g~i~~L~~ll~~---~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~ 525 (767)
++..+......... ..... ..+..+++.+.. ..++.+....+.+|-+++.+.+......+..+-|
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p 273 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP 273 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence 77777643221100 00011 136677777732 2368899999999999998875433333333333
Q ss_pred HHHHHhcC--CCHHHHHHHHHHHHhhccCC------hhHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 526 ALAQLVHS--NDNDVLRYACEALSCLSDGT------NDKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 526 ~L~~ll~~--~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
.+ .+=+- ....--...+.+++.++.+- ....+.+++.|++...++++...-+
T Consensus 274 ~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 274 YL-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred hc-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 22 11110 10000122345555555331 2456677888999989988887766
No 274
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.18 E-value=17 Score=35.99 Aligned_cols=222 Identities=19% Similarity=0.178 Sum_probs=128.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCCCCCCccch
Q 004225 442 IFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGKPEPPFDQV 520 (767)
Q Consensus 442 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 520 (767)
.|=..|.++|+.+|..|+..|+.+...-+.. .+...-+..+++.+. +-.|......++.++..+.... .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence 3556788899999999999999988655532 123334556666553 2246666666677777777443 2222223
Q ss_pred hchHHHHHHHhc--CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 521 RPALPALAQLVH--SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 521 ~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
..++..+.+-.. .-....|..+...+..+.+........+ ..+++..+++.+..+..+ .-..-+...+..+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDP-RnLl~~F~l~~~i~---- 152 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDP-RNLLLSFKLLKVIL---- 152 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHH----
Confidence 344444443222 2336788888888888887654444322 235777788877765431 22222222222221
Q ss_pred cceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhc---------C-Cc--hhHHHHHHHHHHhhcCCCHH
Q 004225 599 FLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQN---------A-EF--FTKKEAARAISNAISGGTHE 666 (767)
Q Consensus 599 ~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~---------~-~~--~v~~~a~~~L~nl~~~~~~~ 666 (767)
..-+ + ....+.+.+.+.. + ++ -.+..-..+|.+.... ++.
T Consensus 153 --------------------~~~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~~ 204 (262)
T PF14500_consen 153 --------------------QEFD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TPL 204 (262)
T ss_pred --------------------Hhcc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cHh
Confidence 1100 0 1233334433321 1 22 2344455566666554 555
Q ss_pred HHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 667 QIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 667 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
.+.. .++.|++-+.++.+.++..++.+|...+..-
T Consensus 205 fa~~-----~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 205 FAPF-----AFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred hHHH-----HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 5544 7999999999999999999999999888743
No 275
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.97 E-value=2 Score=41.63 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=82.6
Q ss_pred hHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh-cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc
Q 004225 607 AKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ-NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL 685 (767)
Q Consensus 607 ~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~ 685 (767)
...|+.+|.-++--.+..+..+-+...+..++.++. ...+.++..+..+|..+..+ ++...+.+.+.+++..++.+++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld-~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD-SPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc-ChHHHHHHHHhCCHHHHHHHHc
Confidence 344556666666655677777778899999999995 45689999999999999888 6888888899999999999999
Q ss_pred C--CCHHHHHHHHHHHHHHHHhhhh
Q 004225 686 Y--ADPEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 686 ~--~~~~v~~~al~aL~~l~~~~~~ 708 (767)
+ .+.+++-+++..|+-++.....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~E~~ 211 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMPETP 211 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcccCC
Confidence 6 4778999999999998875443
No 276
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=0.019 Score=54.65 Aligned_cols=83 Identities=23% Similarity=0.335 Sum_probs=48.8
Q ss_pred CCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecC--CCCcccccC
Q 004225 223 FQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVD--LERLTSFCS 300 (767)
Q Consensus 223 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~~~~ 300 (767)
+.+.++|+.||| ++.++ ++...++.||.|.++=.+ +..+..-. .+++|++|++.. .+.+..+.
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNk-IssL~pl~---------rCtrLkElYLRkN~I~sldEL~- 82 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNK-ISSLAPLQ---------RCTRLKELYLRKNCIESLDELE- 82 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeeccc-cccchhHH---------HHHHHHHHHHHhcccccHHHHH-
Confidence 556778888887 35565 344568888888776322 33332211 167777777753 12332221
Q ss_pred CCccccCCccceEeecCCCCcc
Q 004225 301 GNCAFKFPSLERLVVDDCPDMK 322 (767)
Q Consensus 301 ~~~~~~~~~L~~L~i~~c~~l~ 322 (767)
...++|+|+.|++.+.|=..
T Consensus 83 --YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 83 --YLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred --HHhcCchhhhHhhccCCccc
Confidence 22467888888887766443
No 277
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=33 Score=38.61 Aligned_cols=298 Identities=12% Similarity=0.080 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhH-HHH--hCCChHHHHHhhC
Q 004225 374 GLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTN-VVI--DGGAVPIFVKLLS 448 (767)
Q Consensus 374 ~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~-~~~--~~~~l~~L~~lL~ 448 (767)
-++...+..++...+-....-.+.-+-..+.+++++.+|..++..+++++.-+.. +..+ .+. -.+....+.++++
T Consensus 502 iiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~ 581 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLK 581 (978)
T ss_pred HHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHH
Confidence 3566677777776621111112223346678889988668889999999988887 2222 111 1344455555665
Q ss_pred C-CCHHHHHHHHHHHHHHhcCCchhH-HHHHhcCCHHHHHHHHcc-CCChHHHHHHHHHHHhhcCCCCCCCccchhchHH
Q 004225 449 S-PSDDVREKAVWALGNIARSSPRDR-DLVLSEKALIPLLAQLNK-HAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALP 525 (767)
Q Consensus 449 ~-~~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~~L~~ll~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~ 525 (767)
. +.-+.+...+..++.+.....+.. .+. ...++.+-.+... .+.+-++.+.+.++.|+...-.........-.+|
T Consensus 582 ~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~p 659 (978)
T KOG1993|consen 582 AVEECDTKTSVLNLLSTLIERVSEHIAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYP 659 (978)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHH
Confidence 5 555677778888888775433322 111 1123333333323 3445567777888888876542222222222233
Q ss_pred HHHHHhc--CC-CHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCccee
Q 004225 526 ALAQLVH--SN-DNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQ 602 (767)
Q Consensus 526 ~L~~ll~--~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 602 (767)
.+-.-.. ++ ..-..++++..-.....+.+.....+. +.+|.+...++....
T Consensus 660 VIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste------------------------ 713 (978)
T KOG1993|consen 660 VIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTE------------------------ 713 (978)
T ss_pred HHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhh------------------------
Confidence 2222222 11 122333333322222222222222232 367888877776653
Q ss_pred ehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 004225 603 CTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCD 682 (767)
Q Consensus 603 ~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ 682 (767)
....+..++....--+....-.....|++..+..++.+-..+-....+.++..+... ..........++++.++.
T Consensus 714 ---~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t--~~il~~~~~~~~L~~lf~ 788 (978)
T KOG1993|consen 714 ---NLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT--NPILGSLLFSPLLSRLFL 788 (978)
T ss_pred ---hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--hHHHHhhhcchhhHHHHH
Confidence 112222222222211111111223346778888888776666666667777766664 234444555667776666
Q ss_pred hh--cCCCHHHHHHHHHHHHHHHH
Q 004225 683 LL--LYADPEIVTICLKGLENILK 704 (767)
Q Consensus 683 ll--~~~~~~v~~~al~aL~~l~~ 704 (767)
-+ +++-|.+.-.-+.++.++.-
T Consensus 789 ~I~~~~~yP~~~~~yl~vvaRi~l 812 (978)
T KOG1993|consen 789 SIAENDKYPYVMGEYLLVVARISL 812 (978)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHh
Confidence 44 34556666666666666654
No 278
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.70 E-value=2.6 Score=45.90 Aligned_cols=142 Identities=18% Similarity=0.117 Sum_probs=96.2
Q ss_pred hHHHHHHHhcC----CCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhc-CCCCCCcccchHHHHHhhhhccC
Q 004225 523 ALPALAQLVHS----NDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLL-HPLPFPFGLTPPLWTVRYIVKGD 597 (767)
Q Consensus 523 ~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~~v~~~a~~~L~~l~~~~ 597 (767)
+-|.......+ +|++++.+|.-+|..+..-+.+... .-+|.++..+. ++++ .++.+|.-.++.++
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P--~IR~NaVvglgD~~--- 962 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIP--RIRANAVVGLGDFL--- 962 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCc--ceeccceeeccccc---
Confidence 33444444443 6899999999999888765544333 35788888887 7787 55555555555443
Q ss_pred CcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 004225 598 GFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCI 677 (767)
Q Consensus 598 ~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i 677 (767)
...+...+. .-..|.+-|.+.+..||+.|..++.++...+. +--.|-.
T Consensus 963 ---------------------vcfN~~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGql 1010 (1128)
T COG5098 963 ---------------------VCFNTTADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQL 1010 (1128)
T ss_pred ---------------------eehhhhhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccch
Confidence 322222221 23456667777888999999999999887532 2225778
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 678 KPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 678 ~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
..+..++.++|.++...|-..+..++...
T Consensus 1011 g~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 1011 GKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred hhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 88888899999988888888887777643
No 279
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.47 E-value=4.2 Score=45.58 Aligned_cols=294 Identities=14% Similarity=0.087 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhH------HHHhCCCh
Q 004225 371 DDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTN------VVIDGGAV 440 (767)
Q Consensus 371 ~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~------~~~~~~~l 440 (767)
++.-....+++.++.++ ..-...+++.|+|..|+..=+-+. .-.-...+|..+.. ...+ ..+-..++
T Consensus 365 ~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~---~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv 441 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSE---TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVV 441 (1516)
T ss_pred ccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchh---hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHH
Confidence 45556677888888888 455677888888888876544322 22223344554444 1111 11223456
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHcc-------C-----------CChHHHHHHH
Q 004225 441 PIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK-------H-----------AKPSMLRNAT 502 (767)
Q Consensus 441 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-------~-----------~~~~~~~~~~ 502 (767)
..-+.++......-+.+++..+.- +.......+.+-..+.++.|+.+++. + .+..+-...+
T Consensus 442 ~~~~~l~~cs~~~~~~~~~~ff~~-~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC 520 (1516)
T KOG1832|consen 442 KLAIELLDCSQDQARKNSALFFAA-AFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTC 520 (1516)
T ss_pred HHHHHHHhcchhhccchHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhH
Confidence 666777766444333333332222 11111122333344567777777631 1 1233444556
Q ss_pred HHHHhhcCCC-----CC-CCccchhchHHHHHHHhcCC------CHHHHHHHHHHHHhhccCCh-------hHHHHHHhc
Q 004225 503 KTLSRFCQGK-----PE-PPFDQVRPALPALAQLVHSN------DNDVLRYACEALSCLSDGTN-------DKIQAVIEA 563 (767)
Q Consensus 503 ~~L~~l~~~~-----~~-~~~~~~~~~i~~L~~ll~~~------~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~ 563 (767)
.++.+.-... +. .+.....+..+..+.-+... ..+..++.+|-+..+.+..+ ...+-+...
T Consensus 521 ~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkl 600 (1516)
T KOG1832|consen 521 FALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKL 600 (1516)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHh
Confidence 6665443221 11 11112222222222211111 13344455555544443322 223334445
Q ss_pred CcHHHHHHHhcCCCCC------CcccchHHHHHhhhhccCCcceeeh-----------------------------hhhH
Q 004225 564 DVCPRLVKLLLHPLPF------PFGLTPPLWTVRYIVKGDGFLTQCT-----------------------------GIAK 608 (767)
Q Consensus 564 ~~~~~L~~lL~~~~~~------~~v~~~a~~~L~~l~~~~~~~~~~l-----------------------------~v~~ 608 (767)
+++..++++......+ .+....|+.+|.-+..-++-+.+.+ +++.
T Consensus 601 s~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~ 680 (1516)
T KOG1832|consen 601 SGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQ 680 (1516)
T ss_pred HHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHH
Confidence 6666666666544222 1334445555554443222111111 6777
Q ss_pred HHHHHHhhhccCCHH-----------------------------------HHHHHHHcCCHHHHHHHHhcCCc-----hh
Q 004225 609 EACRTISNITAGNRE-----------------------------------QIQVVIDAGVIGPLVDLLQNAEF-----FT 648 (767)
Q Consensus 609 ~a~~~l~nl~~~~~~-----------------------------------~~~~~~~~~~i~~L~~ll~~~~~-----~v 648 (767)
.|+.+|.|++...++ ....+...++|..|+++++...+ .+
T Consensus 681 ~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~I 760 (1516)
T KOG1832|consen 681 PALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCI 760 (1516)
T ss_pred HHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHH
Confidence 777777777653311 12233446789999999997654 68
Q ss_pred HHHHHHHHHHhhcCCCHHHHHH
Q 004225 649 KKEAARAISNAISGGTHEQIKY 670 (767)
Q Consensus 649 ~~~a~~~L~nl~~~~~~~~~~~ 670 (767)
|.-|+.+|.-++.+ +..++.
T Consensus 761 RalAc~~L~GLaR~--~tVrQI 780 (1516)
T KOG1832|consen 761 RALACRVLLGLARD--DTVRQI 780 (1516)
T ss_pred HHHHHHHHhccccC--cHHHHH
Confidence 99999999999986 344443
No 280
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=90.44 E-value=20 Score=35.60 Aligned_cols=217 Identities=9% Similarity=0.070 Sum_probs=138.8
Q ss_pred HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccch------hchHHHHHHHhcCCCHHHHHHHHHHHH
Q 004225 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQV------RPALPALAQLVHSNDNDVLRYACEALS 547 (767)
Q Consensus 474 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~ 547 (767)
+.+.++|....++..+ ...+-+.+..++....++-+..-....... ...+..++.--.. .+++...+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 4566788999999999 888889999999999998876522222211 2344444433111 2455444444444
Q ss_pred hhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHH
Q 004225 548 CLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQV 627 (767)
Q Consensus 548 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~ 627 (767)
.-.++ +...+.+..+.-+......++.+.- ++...|..+...+. ..-...+.+
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~F--diasdA~~tfK~ll------------------------t~Hk~~vaE 203 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNF--DIASDAFSTFKELL------------------------TRHKSVVAE 203 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccch--HHHHHHHHHHHHHH------------------------HHhHHHHHH
Confidence 43333 3344556667778888888888887 66666665554443 221222333
Q ss_pred HHHcCC----HHHHHHHHhcCCchhHHHHHHHHHHhhcCCC--HHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHH
Q 004225 628 VIDAGV----IGPLVDLLQNAEFFTKKEAARAISNAISGGT--HEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLEN 701 (767)
Q Consensus 628 ~~~~~~----i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~ 701 (767)
++..+. .+.--.++.+.+.-.++.+..+++.+..+.. ....+++-+...++.++.+++++...+|-+|-....-
T Consensus 204 fl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKv 283 (342)
T KOG1566|consen 204 FLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKV 283 (342)
T ss_pred HHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHH
Confidence 333222 2335667889999999999999999976532 2233444445788999999999999999999888777
Q ss_pred HHHhhhhhhccCCccccccHHHHHHHhh
Q 004225 702 ILKVGEAEMNTGTANRYFNHYARLVEAA 729 (767)
Q Consensus 702 l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 729 (767)
...... .+.++..++...
T Consensus 284 fvAnpn----------K~q~V~~IL~~N 301 (342)
T KOG1566|consen 284 FVANPN----------KPQPVRDILVRN 301 (342)
T ss_pred HhcCCC----------CCchHHHHHHhC
Confidence 665322 455677777544
No 281
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=1.3 Score=46.77 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=87.9
Q ss_pred cCchHHHHhh-ccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHH
Q 004225 397 SGVVARFVEF-LTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRD 474 (767)
Q Consensus 397 ~g~i~~L~~l-l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~ 474 (767)
.|++..+++. ..+.+ .+++++|.-+|+-++.+.+ ..++..+++|.. .++.+|...+.+|+-.+.+.....
T Consensus 550 ~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~- 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDR------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV- 621 (926)
T ss_pred chhHhhhheeecccCc-hHHHHHHHHheeeeEecCc------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-
Confidence 3567777777 44555 7999999999887775322 456667776654 789999999999998887654321
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHH
Q 004225 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDV 538 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 538 (767)
++..|-.++ .++..-+|+.|+-+++.+.......-.....+++..+.+++.+..++-
T Consensus 622 ------a~diL~~L~-~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~g 678 (926)
T COG5116 622 ------ATDILEALM-YDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHESG 678 (926)
T ss_pred ------HHHHHHHHh-hCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHhH
Confidence 344555555 778888999999998887755433333455677777777776555433
No 282
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.38 E-value=0.65 Score=41.83 Aligned_cols=147 Identities=19% Similarity=0.138 Sum_probs=95.5
Q ss_pred hHHHHhhccC-CCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHH-H
Q 004225 400 VARFVEFLTR-EDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLV-L 477 (767)
Q Consensus 400 i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~-~ 477 (767)
+..++..+.. ...+++|..|.-++.++....++.. ..-+-+.+-..+...+.+-...+..++..+--..++....+ .
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~ 83 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFL 83 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCC
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 3445554443 3336799999988888865111111 11123344445555444455677888888887777765444 4
Q ss_pred hcCCHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc-CCCHH-HHHHHHHHHHh
Q 004225 478 SEKALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH-SNDND-VLRYACEALSC 548 (767)
Q Consensus 478 ~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~-v~~~a~~~L~~ 548 (767)
..|..+.++.++. ...+..++..++.++..-|.+. .++......+++.|...++ +++.. ++..|+-+|..
T Consensus 84 ~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 84 SEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6688888888883 3788889999999998888664 5566666778899999995 44455 67777766654
No 283
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.24 E-value=0.69 Score=49.45 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred cccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEV 278 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 278 (767)
+..|++|.+.+-.... .......+.++..|.+.+.. +.+.+ ...+.+++|++|+++++. +.++.. ...
T Consensus 208 ~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~-~~~~~--~~~~~l~~l~~L~~s~n~-i~~i~~-~~~------ 275 (394)
T COG4886 208 LSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNK-LEDLP--ESIGNLSNLETLDLSNNQ-ISSISS-LGS------ 275 (394)
T ss_pred hhhhhhhhhcCCccee-cchhhhhcccccccccCCce-eeecc--chhccccccceecccccc-cccccc-ccc------
Confidence 4558888886643222 23345666777777754433 33321 224567889999988765 555544 322
Q ss_pred ccccccceEeecCCCCccccc
Q 004225 279 ITFRELKELKLVDLERLTSFC 299 (767)
Q Consensus 279 ~~~~~L~~L~l~~~~~l~~~~ 299 (767)
+.+|+.|++++-......+
T Consensus 276 --~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 276 --LTNLRELDLSGNSLSNALP 294 (394)
T ss_pred --cCccCEEeccCccccccch
Confidence 6888888888755444433
No 284
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.07 E-value=0.023 Score=54.24 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=9.3
Q ss_pred ccccceeeecCCC
Q 004225 154 LHTMKVLQIGGYS 166 (767)
Q Consensus 154 l~~L~~L~l~~~~ 166 (767)
+.+.++|..+||+
T Consensus 18 l~~vkKLNcwg~~ 30 (388)
T KOG2123|consen 18 LENVKKLNCWGCG 30 (388)
T ss_pred HHHhhhhcccCCC
Confidence 4567777888776
No 285
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.73 E-value=0.12 Score=49.17 Aligned_cols=115 Identities=23% Similarity=0.231 Sum_probs=56.5
Q ss_pred cCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCccccc
Q 004225 29 SSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVR 108 (767)
Q Consensus 29 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 108 (767)
..+.+|+.|++.++. +..+ ...-.+|+|++|.++....-........ ...+|+|++|++++...- ..
T Consensus 40 d~~~~le~ls~~n~g-ltt~----------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~-~l 106 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTL----------TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK-DL 106 (260)
T ss_pred ccccchhhhhhhccc-eeec----------ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc-cc
Confidence 456667777666554 3322 2223366777777765411111111111 234588888887765421 10
Q ss_pred ccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 109 TTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 109 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
. ..-+...+.+|..|++..|.... +.+ .=...+.-+++|+.|.-....
T Consensus 107 s-tl~pl~~l~nL~~Ldl~n~~~~~----l~d-----yre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 107 S-TLRPLKELENLKSLDLFNCSVTN----LDD-----YREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred c-ccchhhhhcchhhhhcccCCccc----ccc-----HHHHHHHHhhhhccccccccC
Confidence 0 11122457778888887775321 101 111234556677777655544
No 286
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=36 Score=37.99 Aligned_cols=81 Identities=16% Similarity=0.066 Sum_probs=62.3
Q ss_pred CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhc
Q 004225 388 LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIAR 467 (767)
Q Consensus 388 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~ 467 (767)
..+...+++.-+++.++..++++. --.+.+|+..+..+..+.++..+-..+.......+.+++-.++.+|+-++.-+..
T Consensus 450 ~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 450 MSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIF 528 (970)
T ss_pred CchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHh
Confidence 344566677777888888888887 6889999999998844555554444566777778888888899999999999887
Q ss_pred CC
Q 004225 468 SS 469 (767)
Q Consensus 468 ~~ 469 (767)
+.
T Consensus 529 ~~ 530 (970)
T COG5656 529 NE 530 (970)
T ss_pred ch
Confidence 65
No 287
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=89.55 E-value=14 Score=36.51 Aligned_cols=206 Identities=20% Similarity=0.159 Sum_probs=121.5
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhc------CCChHH-H-----------HhcCchHHHHhhccCCCCHHHHHHHHHHHHHH
Q 004225 365 LAGVWSDDSGLQLEATTWFRKLL------LPPSEK-V-----------IQSGVVARFVEFLTREDNPQLQLEAARALTNI 426 (767)
Q Consensus 365 ~~~l~s~~~~~~~~a~~~L~~l~------~~~~~~-i-----------~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l 426 (767)
+..|.+.++..-..|+..|.++. ++.... + .-.|+.+.+++-+.++. ....+...|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 46677777777777777777665 111111 1 11355566667777665 345567777777
Q ss_pred Hh----------hhhHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccC
Q 004225 427 AS----------ENTNVVIDGGAVPIFVKLLSSPS----DDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKH 492 (767)
Q Consensus 427 ~~----------~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~ 492 (767)
+. +.+-.+.-.+.+|.++..+++++ ......++..|..+|.... ...+..++....+.
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 76 12222222346788888787766 2344567788888884321 12333444444222
Q ss_pred ---CChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHH
Q 004225 493 ---AKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRL 569 (767)
Q Consensus 493 ---~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 569 (767)
...+....++..++.-... ......+..++.++.+.-..++..++.+|..+...-+-... ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P------~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFP------DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 2334455555555443211 13345777889999999999999999999998866543322 344688888
Q ss_pred HHHhcCCCCCCcccchHHHHHhhhh
Q 004225 570 VKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 570 ~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
.++++++-. ..|+.++-++.
T Consensus 234 lrlL~t~~~-----~eAL~VLd~~v 253 (262)
T PF14225_consen 234 LRLLQTDLW-----MEALEVLDEIV 253 (262)
T ss_pred HHHhCCccH-----HHHHHHHHHHH
Confidence 999877543 45555554443
No 288
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.14 E-value=2.7 Score=47.99 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=92.3
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHHhcCCchh
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLLSS----PSDDVREKAVWALGNIARSSPRD 472 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~ 472 (767)
.+..+.+++.+.. .....|+..+..+.. .... ...+..+..+++. .++.++..|+-+++.+.......
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPT----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT---------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 3556666666654 223335555655554 1111 1234556666665 46778888888888887321111
Q ss_pred ---------HHHHHhcCCHHHHHHHHc---cCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCC---CHH
Q 004225 473 ---------RDLVLSEKALIPLLAQLN---KHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSN---DND 537 (767)
Q Consensus 473 ---------~~~~~~~g~i~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~ 537 (767)
....+....++.+...+. ...+.+-+..++.+|+|+-.. ..++.+...+... +..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchH
Confidence 011122235666666664 456778889999999999754 4788888888766 689
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 538 VLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 538 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
+|..|++++..+....++.. .+.+..++.+...
T Consensus 540 ~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e 572 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTE 572 (618)
T ss_dssp HHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCC
Confidence 99999999999877665443 3456677766554
No 289
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=89.13 E-value=2.3 Score=38.41 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=82.4
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDL 475 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 475 (767)
.+++.|+++++.+....+|.+|+++++.+-. .++....+.+ .+.-. -...+.......... .......++
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~~--~~~~~~~~~~~~l~~-~~~~~~~ee---- 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSKS--SENSNDESTDISLPM-MGISPSSEE---- 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCccc--cccccccchhhHHhh-ccCCCchHH----
Confidence 3567888999988779999999999999977 2222221111 11000 011111111111111 111112222
Q ss_pred HHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 004225 476 VLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLS 550 (767)
Q Consensus 476 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 550 (767)
.....++..|+..+++..-..-...++.++.++..............++|.+++.++..+...++...+-|+.+.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 223346788888884333333444577777776644433346667889999999999777788877776666553
No 290
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=89.09 E-value=28 Score=44.18 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=89.2
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHhcCCc---hhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 443 FVKLLSSPSDDVREKAVWALGNIARSSP---RDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 443 L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
++..-.+.+..+...|+..|..++...- +....-.+...+.++..++..+.+.++++.++.++.++...... .
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----n 1217 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----N 1217 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----h
Confidence 3333334567788889888888874222 21122234457788888887788899999999999998765311 1
Q ss_pred hhchHHHHHHHh----cCCCHHHHHHHHHHHHhhccCChhH-----HHHHHhcCcHHHHHHHhcCC-CCCCcccchHHHH
Q 004225 520 VRPALPALAQLV----HSNDNDVLRYACEALSCLSDGTNDK-----IQAVIEADVCPRLVKLLLHP-LPFPFGLTPPLWT 589 (767)
Q Consensus 520 ~~~~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~~~~L~~lL~~~-~~~~~v~~~a~~~ 589 (767)
...+-+.+..++ .+.++.+...+..++..++...-.. ...+. ..+..+.++.... +. ++-..|+..
T Consensus 1218 IkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~--nISL~AI~l 1293 (1780)
T PLN03076 1218 VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNK--DISLNAIAF 1293 (1780)
T ss_pred hhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcc--cccHHHHHH
Confidence 122333344333 4667888888888888776431110 11222 3566666666544 34 777888888
Q ss_pred Hhhhh
Q 004225 590 VRYIV 594 (767)
Q Consensus 590 L~~l~ 594 (767)
+.+++
T Consensus 1294 L~~~~ 1298 (1780)
T PLN03076 1294 LRFCA 1298 (1780)
T ss_pred HHHHH
Confidence 77664
No 291
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.00 E-value=24 Score=40.47 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCC
Q 004225 373 SGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPS 451 (767)
Q Consensus 373 ~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~ 451 (767)
+.++-.+.-.|.+++ .... .....+|.|++-|...++..+|-..+-+++.++..+. .++ ...+|.+-.-|.+++
T Consensus 945 ~~vra~~vvTlakmcLah~~---LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-am~-d~YiP~I~~~L~Dp~ 1019 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR---LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-AMT-DRYIPMIAASLCDPS 1019 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-HHH-HHhhHHHHHHhcCch
Confidence 345666777788777 2221 1223589999988877756777777777777765221 122 246899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhc-C--CHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHH
Q 004225 452 DDVREKAVWALGNIARSSPRDRDLVLSE-K--ALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALA 528 (767)
Q Consensus 452 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~-g--~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~ 528 (767)
+-+|.+++..|.++.... ++.. | .+..++.++ +.+++++..|=..++.+.... ...++...++..++
T Consensus 1020 ~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~--~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSE--EPNFFPLNFVEYII 1089 (1529)
T ss_pred HHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhc--CccchHHHHHHHHH
Confidence 999999999999998431 2222 2 355556665 678899999999999988664 22334445555555
Q ss_pred HH
Q 004225 529 QL 530 (767)
Q Consensus 529 ~l 530 (767)
.+
T Consensus 1090 ~l 1091 (1529)
T KOG0413|consen 1090 AL 1091 (1529)
T ss_pred HH
Confidence 44
No 292
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.99 E-value=0.3 Score=25.09 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=6.1
Q ss_pred ccceEeecCCCCcccc
Q 004225 309 SLERLVVDDCPDMKIF 324 (767)
Q Consensus 309 ~L~~L~i~~c~~l~~~ 324 (767)
+|+.|++++|. ++.+
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 45555555553 4433
No 293
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.65 E-value=36 Score=37.74 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=93.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhc-CCc----hhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-C
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIAR-SSP----RDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-P 513 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~ 513 (767)
=|.+.+.|+..|..||..|+..+.++.- .+| +-.+.+++. -...+..+| +++-+.+|..|+.-++.+...- .
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLL-EDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHH
Confidence 3566777888999999999999999872 222 233445443 346788888 8999999999988887776543 2
Q ss_pred CCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhh
Q 004225 514 EPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRY 592 (767)
Q Consensus 514 ~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~ 592 (767)
..........+..+..-+. ++..+||......+-.+..++... .+.+ .++|.+-..|.+... .|+.++...|.-
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh--~~le-~~Lpal~~~l~D~se--~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSH--PLLE-QLLPALRYSLHDNSE--KVRVAFVDMLLK 328 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccch--hHHH-HHHHhcchhhhccch--hHHHHHHHHHHH
Confidence 2222223333333333333 444788888888888888765322 1222 256677777777777 555555555444
Q ss_pred h
Q 004225 593 I 593 (767)
Q Consensus 593 l 593 (767)
+
T Consensus 329 i 329 (1005)
T KOG1949|consen 329 I 329 (1005)
T ss_pred H
Confidence 4
No 294
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=88.47 E-value=25 Score=34.12 Aligned_cols=140 Identities=26% Similarity=0.295 Sum_probs=92.2
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 004225 400 VARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLS 478 (767)
Q Consensus 400 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 478 (767)
++.|+.-+....++..+.....+|..++. ++ ....-++..+..+.+.+..+.+.-+...+..+-..++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~---~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN---VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc---cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence 34455534444448999999999999987 41 1112345566666666777776777778887776544321
Q ss_pred cCCHHHHHHHH---------ccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHh-cCCCHHHHHHHHHHHHh
Q 004225 479 EKALIPLLAQL---------NKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLV-HSNDNDVLRYACEALSC 548 (767)
Q Consensus 479 ~g~i~~L~~ll---------~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~ 548 (767)
+.++.++... ..+...+.......++..+|...|. .....++.+..++ ++.++.++..++.++..
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2344444441 0122344555556788888888766 5566788888888 78888999999999999
Q ss_pred hccC
Q 004225 549 LSDG 552 (767)
Q Consensus 549 l~~~ 552 (767)
+|..
T Consensus 149 Lc~~ 152 (234)
T PF12530_consen 149 LCEA 152 (234)
T ss_pred HHHH
Confidence 9944
No 295
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=88.06 E-value=12 Score=39.87 Aligned_cols=231 Identities=14% Similarity=0.125 Sum_probs=126.3
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC
Q 004225 434 VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP 513 (767)
Q Consensus 434 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 513 (767)
.++...+..|+.++.++|+.-|.....++.++.+.....|..+ .......+.+.+.......-...++..++.+..+-.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I-r~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFI-RKSINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH-HHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 4555678889999999999999999999999887666666654 334566677777556666667778888888877642
Q ss_pred CC-CccchhchHHHHHHHhcCCC-HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHh
Q 004225 514 EP-PFDQVRPALPALAQLVHSND-NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVR 591 (767)
Q Consensus 514 ~~-~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~ 591 (767)
.. +.....-....++.+.+... ...-.....++..+...++..... ++..+++.=-..+.
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~WP~t~s------------- 269 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHWPKTNS------------- 269 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS-SS-H-------------
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCc-------------
Confidence 22 22222233344444444443 222334444444444443332222 12222222211111
Q ss_pred hhhccCCcceeehhhhHHH--HHHHhhhccC-CHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHH
Q 004225 592 YIVKGDGFLTQCTGIAKEA--CRTISNITAG-NREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQI 668 (767)
Q Consensus 592 ~l~~~~~~~~~~l~v~~~a--~~~l~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 668 (767)
.++. +.-+..+... .+.....+.. .+...+...+.+.+..|...|+....| +..
T Consensus 270 ---------------~Kev~FL~el~~il~~~~~~~f~~i~~-~lf~~la~ci~S~h~qVAErAl~~w~n-------~~~ 326 (409)
T PF01603_consen 270 ---------------QKEVLFLNELEEILEVLPPEEFQKIMV-PLFKRLAKCISSPHFQVAERALYFWNN-------EYF 326 (409)
T ss_dssp ---------------HHHHHHHHHHHHHHTT--HHHHHHHHH-HHHHHHHHHHTSSSHHHHHHHHGGGGS-------HHH
T ss_pred ---------------hhHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHCC-------HHH
Confidence 1221 2223333332 2233332222 367778888889999998887765433 222
Q ss_pred HHHHHc---CChHHHHhhhcC----C-CHHHHHHHHHHHHHHHHhh
Q 004225 669 KYLVRK---GCIKPLCDLLLY----A-DPEIVTICLKGLENILKVG 706 (767)
Q Consensus 669 ~~l~~~---~~i~~L~~ll~~----~-~~~v~~~al~aL~~l~~~~ 706 (767)
..++.. .+++.+..-+.. . +..++..|..++..+....
T Consensus 327 ~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 327 LSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 223332 245555554432 2 6789999999999888753
No 296
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.86 E-value=6.3 Score=38.87 Aligned_cols=138 Identities=25% Similarity=0.256 Sum_probs=95.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc--CCC-hHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHh
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL--LPP-SEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVID 436 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 436 (767)
++...+..|.+++++....++..++.++ .+. ...+. ..++-.+++-+++.. ..+-..|+.++..+....-+.+.+
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlR-S~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLR-SAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666788899999999999999999998 222 22222 235666777788888 789999999999998822222222
Q ss_pred CCChHHHHH-hhCC---CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhc
Q 004225 437 GGAVPIFVK-LLSS---PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 437 ~~~l~~L~~-lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 509 (767)
.+..++. ++.. ++.-+++.|-.+|..+....... -+++.|+..+ .+.++.++..++.++.+..
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~-~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPIL-QHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHH-hhhchhhhhhhhccccccc
Confidence 2344444 3333 55778999999999888653322 1457777777 7778888888877666544
No 297
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.70 E-value=11 Score=41.65 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=100.8
Q ss_pred CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHHh
Q 004225 388 LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKL-LSSPSDDVREKAVWALGNIA 466 (767)
Q Consensus 388 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~nl~ 466 (767)
......-+...+++.|..-+++.+ ..+|..++..+..++...--..+...++|.+-.+ ++..+..++..++.+++.++
T Consensus 379 ~Kt~~e~~~~~IlplL~~S~~~~~-~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 379 EKTPPEEVKEKILPLLYRSLEDSD-VQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred hhCChHHHHHHHHHHHHHHhcCcc-hhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 344444566678899999999998 9999999999999988111344455678888775 45588999999999999998
Q ss_pred cCCchhHHHHHhcCCHHHHHHHHc--cCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCC
Q 004225 467 RSSPRDRDLVLSEKALIPLLAQLN--KHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSND 535 (767)
Q Consensus 467 ~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~ 535 (767)
.. .+ ...+++.+..+++ +..++.+....+.+..++....+.........++|.++.+...+.
T Consensus 458 q~----lD---~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 458 QR----LD---KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HH----HH---HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 21 11 2224444444443 678899999999998888877655456667788898888776554
No 298
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.68 E-value=4.9 Score=46.14 Aligned_cols=199 Identities=14% Similarity=0.058 Sum_probs=125.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
+.+.+..-+.+.+..-|..|+..+........ ..-.....|.+-.++.....+.+..+...++.+|..++..-.....-
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 34556666677888888888888888876543 11111122344555555556778888888999999888776444455
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
....+.|.++.-+......++..+..++-.++.... -....+.+...+++.++ .++......+.......+
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp--~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNP--QIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHHhhcC
Confidence 566778888888888877787777777766655321 11366788899999998 444333333222221111
Q ss_pred cceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHH
Q 004225 599 FLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKY 670 (767)
Q Consensus 599 ~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 670 (767)
+.....-.-.++++.++....+.+.+||..|..+++-+......+....
T Consensus 404 -----------------------~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k 452 (815)
T KOG1820|consen 404 -----------------------PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKK 452 (815)
T ss_pred -----------------------CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 0111111123467888888888899999999999888776544444443
No 299
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=87.52 E-value=2.6 Score=39.26 Aligned_cols=129 Identities=19% Similarity=0.119 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHH---------------HhcCCHHHHHHHHcc-----CCChHHHHHHHHHHHhh
Q 004225 449 SPSDDVREKAVWALGNIARSSPRDRDLV---------------LSEKALIPLLAQLNK-----HAKPSMLRNATKTLSRF 508 (767)
Q Consensus 449 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~---------------~~~g~i~~L~~ll~~-----~~~~~~~~~~~~~L~~l 508 (767)
+++......++..|+|++......+..+ .+..++..|+..+.+ ....+-....+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 3444455667777777775433332111 112256666666643 23456677889999999
Q ss_pred cCCCCCCCccchh--c--hHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHh--cCcHHHHHHHhcCCC
Q 004225 509 CQGKPEPPFDQVR--P--ALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIE--ADVCPRLVKLLLHPL 577 (767)
Q Consensus 509 ~~~~~~~~~~~~~--~--~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~lL~~~~ 577 (767)
++....++..... + .+..|+.++++.+..-|.-++.++.|.|-..+.....+-+ .+++|.++--+..++
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGpE 160 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGPE 160 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCCC
Confidence 9887555444432 2 3777888888887777888999999999776554333322 367888887776544
No 300
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.47 E-value=3 Score=36.75 Aligned_cols=75 Identities=7% Similarity=0.022 Sum_probs=63.9
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC-CCHHHHHHHHHHHHHHHHhhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY-ADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~ 707 (767)
++..+..-+.+.++.++..|...|-.++..+....-..+...+++..|..++.. .++.|+..++..+......-.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 456677778889999999999999999988777777788888999999999987 788999999999998876543
No 301
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.33 E-value=3 Score=36.44 Aligned_cols=93 Identities=9% Similarity=-0.025 Sum_probs=70.1
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC------CCHHHHHHHHHHHHHHHHhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY------ADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~aL~~l~~~~ 706 (767)
++..+..-+.++++.++..|...|-.++..+....-..+...+++.-|++++.. .++.|+..++..+......-
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456677778899999999999999999887777777777888899999999963 46899999999998887654
Q ss_pred hhhhccCCccccccHHHHHHHhhchH
Q 004225 707 EAEMNTGTANRYFNHYARLVEAAEGF 732 (767)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~l~~~g~~ 732 (767)
.... ........|...|.+
T Consensus 119 ~~~p-------~~~~~Y~~Lk~~G~i 137 (139)
T cd03567 119 PHEP-------KIKEAYDMLKKQGII 137 (139)
T ss_pred cccc-------hHHHHHHHHHHCCCc
Confidence 3222 233455566666654
No 302
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=87.15 E-value=0.095 Score=55.40 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=15.3
Q ss_pred ccccccEEEecCCCccccccCCCCcCCCCCEEEecc
Q 004225 198 VTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSR 233 (767)
Q Consensus 198 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (767)
...+|..|+.+.| .+.+++...+.+.+|+.|.++.
T Consensus 164 ~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 164 LLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred cchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh
Confidence 3444444444332 2333344444444555554443
No 303
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.72 E-value=3.8 Score=40.29 Aligned_cols=144 Identities=18% Similarity=0.277 Sum_probs=94.1
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcc
Q 004225 521 RPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFL 600 (767)
Q Consensus 521 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~ 600 (767)
.-++...+..|.+.|.+.....+..+..++....+....... .++..+++-+++...
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS---------------------- 143 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRS---------------------- 143 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHH----------------------
Confidence 345666677788899999999999999999877654443332 366777777777776
Q ss_pred eeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC---CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 004225 601 TQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA---EFFTKKEAARAISNAISGGTHEQIKYLVRKGCI 677 (767)
Q Consensus 601 ~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i 677 (767)
.+-+.||.+++.+.......+....+ ..+..++... +.=|+..|-.+|..++...++.. ++
T Consensus 144 ----~VsraA~~t~~difs~ln~~i~~~ld----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L 207 (334)
T KOG2933|consen 144 ----AVSRAACMTLADIFSSLNNSIDQELD----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LL 207 (334)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HH
Confidence 66777777777777644444433211 2333444433 33578899999999988765554 34
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHH
Q 004225 678 KPLCDLLLYADPEIVTICLKGLENIL 703 (767)
Q Consensus 678 ~~L~~ll~~~~~~v~~~al~aL~~l~ 703 (767)
+.|.-.++..++.++..+.....+..
T Consensus 208 ~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 208 RKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHhhhchhhhhhhhccccccc
Confidence 55555666677777766665544443
No 304
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=86.51 E-value=2.2 Score=39.88 Aligned_cols=106 Identities=10% Similarity=0.153 Sum_probs=71.4
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHh----hhhHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHHh
Q 004225 400 VARFVEFLTREDNPQLQLEAARALTNIAS----ENTNVVIDGGAVPIFVKLLSS---------PSDDVREKAVWALGNIA 466 (767)
Q Consensus 400 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~l~~L~~lL~~---------~~~~v~~~a~~~L~nl~ 466 (767)
...+++.+.+.. ... ..+..|....+ .+.+.+++.||+..|+.+|.. .+......++.++..+.
T Consensus 68 p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 68 PEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 455666666555 221 22333333333 677788888999999998853 34678899999999888
Q ss_pred cCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhc
Q 004225 467 RSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 467 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 509 (767)
.........+-..+++..++..+ .+++..++..++..|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 55443344444567899999999 8899999999999998776
No 305
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.51 E-value=3.8 Score=32.87 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=59.1
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChh
Q 004225 483 IPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTND 555 (767)
Q Consensus 483 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 555 (767)
+..+..+ .++.+.+|..++..|.++..... ........++..+...++++|+-|=-+|+.++..++...++
T Consensus 6 ~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4455666 78889999999999999998865 45555678889999999999999999999999999977653
No 306
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=86.41 E-value=1.5 Score=40.27 Aligned_cols=108 Identities=21% Similarity=0.266 Sum_probs=64.4
Q ss_pred cCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCC--ccccc
Q 004225 31 FVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCP--EFMVR 108 (767)
Q Consensus 31 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~--~l~~~ 108 (767)
..+...+|++++. +..+ ..+..++.|.+|.+.+. +++++...- ...+|+|+.|.+.+.+ .+.+.
T Consensus 41 ~d~~d~iDLtdNd-l~~l----------~~lp~l~rL~tLll~nN-rIt~I~p~L--~~~~p~l~~L~LtnNsi~~l~dl 106 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKL----------DNLPHLPRLHTLLLNNN-RITRIDPDL--DTFLPNLKTLILTNNSIQELGDL 106 (233)
T ss_pred ccccceecccccc-hhhc----------ccCCCccccceEEecCC-cceeeccch--hhhccccceEEecCcchhhhhhc
Confidence 4455666776664 2222 33445788899888763 455554332 2457889999988754 22222
Q ss_pred ccccccccccCCCceeeeCCcccccc-cccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 109 TTSIFTERVFPNLEKLKVDAKHVVTN-KYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 109 ~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
-+...+|.|+.|.+.+++.-.. -|+ ...+..+++|+.|+..+..
T Consensus 107 ----~pLa~~p~L~~Ltll~Npv~~k~~YR----------~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 107 ----DPLASCPKLEYLTLLGNPVEHKKNYR----------LYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ----chhccCCccceeeecCCchhcccCce----------eEEEEecCcceEeehhhhh
Confidence 2224688999999988764221 111 1235677788888776643
No 307
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=86.37 E-value=71 Score=40.79 Aligned_cols=135 Identities=13% Similarity=0.163 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHHHHHHh---hh---hHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCC
Q 004225 409 REDNPQLQLEAARALTNIAS---EN---TNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKA 481 (767)
Q Consensus 409 ~~~~~~~~~~a~~~L~~l~~---~~---~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~ 481 (767)
+.+ ..+...|+..|+.++. +. ...-.+...+.+|..++.+ .+.++++..+.++.++...... -+.. +
T Consensus 1148 ~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkS-G 1221 (1780)
T PLN03076 1148 SEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKS-G 1221 (1780)
T ss_pred Ccc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhc-C
Confidence 444 6788889998888887 11 1122344567788776765 6789999999999998843221 2233 4
Q ss_pred HHHHHHHHc---cCCChHHHHHHHHHHHhhcCCC-CCC---CccchhchHHHHHHHhcCC-CHHHHHHHHHHHHhh
Q 004225 482 LIPLLAQLN---KHAKPSMLRNATKTLSRFCQGK-PEP---PFDQVRPALPALAQLVHSN-DNDVLRYACEALSCL 549 (767)
Q Consensus 482 i~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~~-~~~---~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l 549 (767)
-+.++.++. .+.++.+.+.|-.++..+..+. +.. .......++..+..+.... +.++-..|+..+.++
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 455555553 4567788888888888777553 211 1233445566666665433 355555666666544
No 308
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.34 E-value=15 Score=43.86 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc---cC---CChHHHHHHHHHHHhhcCCC-CCCCccchhc
Q 004225 450 PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN---KH---AKPSMLRNATKTLSRFCQGK-PEPPFDQVRP 522 (767)
Q Consensus 450 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~---~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~ 522 (767)
+..+++.....++.++.....+. ++ .| -+.+.++++ .. ....+.+.+-.++.-++.+. +..+.....+
T Consensus 854 ~~~evr~~sl~~l~silet~ge~---ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEH---LL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchh---hc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 55677777778888877543321 11 12 333344442 22 25677788888888888776 6667777788
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHhhccC
Q 004225 523 ALPALAQLVH-SNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 523 ~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~ 552 (767)
.++.+..+-+ ..|.++--.|+..++.+++.
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDf 959 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDF 959 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 8888887775 66777777777777776654
No 309
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.28 E-value=4.1 Score=35.87 Aligned_cols=74 Identities=11% Similarity=0.018 Sum_probs=62.1
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL-YADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~ 706 (767)
++..+.+-++++++.++..|...|-.++..+.......+.+.+++..|..++. ..++.|+..++..+......-
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 45667777888999999999999999988766777777788899999999987 467899999999999888654
No 310
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.28 E-value=62 Score=40.51 Aligned_cols=230 Identities=17% Similarity=0.158 Sum_probs=124.4
Q ss_pred CHHHHHhhhcCC-CHHHHHHHHH--HH----HHhc-CC----ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 004225 360 SLPGMLAGVWSD-DSGLQLEATT--WF----RKLL-LP----PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIA 427 (767)
Q Consensus 360 ~i~~l~~~l~s~-~~~~~~~a~~--~L----~~l~-~~----~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 427 (767)
.++..+...++. ...++.++.. ++ +.++ .. .....++.-....++..+...+ |..+..+..++..++
T Consensus 826 ~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~-p~~rc~~~ea~arLa 904 (2067)
T KOG1822|consen 826 HFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPN-PKLRCAAAEALARLA 904 (2067)
T ss_pred HHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCC-hHHHHHHHHHHHHHH
Confidence 366666666554 3445555444 33 3333 11 1222333334555666677777 899999999999999
Q ss_pred h-hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHH
Q 004225 428 S-ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTL 505 (767)
Q Consensus 428 ~-~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L 505 (767)
. .....++ .+..+.++.-+.+ .|+-.|.--.-+++.+-.+.......-.-..++..+..+..++.++.++..++.++
T Consensus 905 q~v~~~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al 983 (2067)
T KOG1822|consen 905 QVVGSAPFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHAL 983 (2067)
T ss_pred HhccccchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHH
Confidence 8 2222222 2345556665655 66666655555555554322211111112235677777776777789999999999
Q ss_pred HhhcCCCCCCCccchhchHHHHHHHhcC-C--CHHHHHHHHHHHH------hhc-------cCChh--HHHHHHhcCcHH
Q 004225 506 SRFCQGKPEPPFDQVRPALPALAQLVHS-N--DNDVLRYACEALS------CLS-------DGTND--KIQAVIEADVCP 567 (767)
Q Consensus 506 ~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~--~~~v~~~a~~~L~------~l~-------~~~~~--~~~~~~~~~~~~ 567 (767)
..+...............+..+..++-. + ..++....-+++. ++. ..+.. ... -.++-...
T Consensus 984 ~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~-~~rts~la 1062 (2067)
T KOG1822|consen 984 ALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTS-TLRTSCLA 1062 (2067)
T ss_pred HHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchh-HHHHHHHH
Confidence 9998776333355555555555555532 2 2233322222222 111 11111 222 12222344
Q ss_pred HHHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 568 RLVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 568 ~L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
...-++.+++. .++..|+.++.++-
T Consensus 1063 ~~allls~~d~--lnqa~ai~clqqlh 1087 (2067)
T KOG1822|consen 1063 ACALLLSHSDP--LNQAAAIKCLQQLH 1087 (2067)
T ss_pred HHHHhcCCCcc--chHHHHHHHHHHHH
Confidence 44445666677 88888888887775
No 311
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=85.99 E-value=40 Score=35.52 Aligned_cols=183 Identities=12% Similarity=0.077 Sum_probs=106.1
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhc------CCChHHHHhcCchHHHHhhccCCC----CHH--HHHHHHHHHHHHHh---
Q 004225 364 MLAGVWSDDSGLQLEATTWFRKLL------LPPSEKVIQSGVVARFVEFLTRED----NPQ--LQLEAARALTNIAS--- 428 (767)
Q Consensus 364 l~~~l~s~~~~~~~~a~~~L~~l~------~~~~~~i~~~g~i~~L~~ll~~~~----~~~--~~~~a~~~L~~l~~--- 428 (767)
+..++...+.+.+++|+....++. ..+.+.+.+.=+.+-+-+++.+.+ +|+ .+..+..+|.-.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 445566677788999998888888 234555667666777777776432 343 34445666666666
Q ss_pred -hhhHHHHhCCChHHHHHhhCC-CCHH------HHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHH
Q 004225 429 -ENTNVVIDGGAVPIFVKLLSS-PSDD------VREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRN 500 (767)
Q Consensus 429 -~~~~~~~~~~~l~~L~~lL~~-~~~~------v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~ 500 (767)
...+.++ +.+|.+..+++. .|++ +.+.+-.+|..+++.. .....++..|+++.+.++- .-++-..-+.
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y-~~~~~~~d~a 171 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMY-ELPDGSHDMA 171 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHH-hCCCCchhHH
Confidence 2233444 468999998875 3333 6777888999999774 4455678999999999776 3332222222
Q ss_pred HHHHHHhhcCCCCCCCccchhc---hHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 004225 501 ATKTLSRFCQGKPEPPFDQVRP---ALPALAQLVHSNDNDVLRYACEALSCLS 550 (767)
Q Consensus 501 ~~~~L~~l~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 550 (767)
..-.+..+....-.+-...... .+..+..=++..+...+..+|..+..+.
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1112222222211111112222 2233333333455667777888887543
No 312
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=85.71 E-value=4.9 Score=37.48 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=70.7
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhc--C--CChHHHHhcCchHHHHhhcc--------CCCCHHHHHHHHHHHHHHHh-
Q 004225 362 PGMLAGVWSDDSGLQLEATTWFRKLL--L--PPSEKVIQSGVVARFVEFLT--------REDNPQLQLEAARALTNIAS- 428 (767)
Q Consensus 362 ~~l~~~l~s~~~~~~~~a~~~L~~l~--~--~~~~~i~~~g~i~~L~~ll~--------~~~~~~~~~~a~~~L~~l~~- 428 (767)
..+++.+++..... ..+..|+... . ...+.+++.|++..|++.+. ...+.+.+..++.++..+..
T Consensus 69 ~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~ 146 (187)
T PF06371_consen 69 EWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT 146 (187)
T ss_dssp HHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc
Confidence 34566666544432 3344444333 2 23667888899999988775 22236889999999999998
Q ss_pred -hhhHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 004225 429 -ENTNVVI-DGGAVPIFVKLLSSPSDDVREKAVWALGNIA 466 (767)
Q Consensus 429 -~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~ 466 (767)
.....++ ..+++..++..|.+++..++..|+.+|+.++
T Consensus 147 ~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 147 KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4455555 5789999999999999999999999998876
No 313
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=85.71 E-value=21 Score=38.44 Aligned_cols=98 Identities=22% Similarity=0.321 Sum_probs=75.2
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHh
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVID 436 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~ 436 (767)
+-.+++.+.+.+..++..+++.|..+. -.+.+..+-.|++..|.+-+-+.. +.+|.+|..+|..+-. .+.+-
T Consensus 93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~neen--- 168 (885)
T COG5218 93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEEN--- 168 (885)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChHH---
Confidence 666788888999999999999999998 566778888888998888777777 8999999999998876 12111
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHHh
Q 004225 437 GGAVPIFVKLLSS-PSDDVREKAVWALGNIA 466 (767)
Q Consensus 437 ~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~ 466 (767)
.....|+..++. ++.++|..|+ .|+.
T Consensus 169 -~~~n~l~~~vqnDPS~EVRr~al---lni~ 195 (885)
T COG5218 169 -RIVNLLKDIVQNDPSDEVRRLAL---LNIS 195 (885)
T ss_pred -HHHHHHHHHHhcCcHHHHHHHHH---HHee
Confidence 234466677765 7788888754 4544
No 314
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=85.48 E-value=5.2 Score=35.29 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=58.2
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC-CChHHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH-DSNGICEKAVKIL 754 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l 754 (767)
+++.|.+-+.++++.++..|+..|..++++.+.. +...+....+++.|..+... .++.|++++..++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 5666777788899999999999999999976543 45566677888999999888 7899999999999
Q ss_pred HHh
Q 004225 755 EIY 757 (767)
Q Consensus 755 ~~~ 757 (767)
..+
T Consensus 106 ~~W 108 (144)
T cd03568 106 KQW 108 (144)
T ss_pred HHH
Confidence 987
No 315
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=85.24 E-value=14 Score=34.01 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=74.0
Q ss_pred chHHHHhh-ccCCCCHHHHHHHHHHHHHHHhhhhHHH--Hh-----CC---------------ChHHHHHhhCC-CCHHH
Q 004225 399 VVARFVEF-LTREDNPQLQLEAARALTNIASENTNVV--ID-----GG---------------AVPIFVKLLSS-PSDDV 454 (767)
Q Consensus 399 ~i~~L~~l-l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~-----~~---------------~l~~L~~lL~~-~~~~v 454 (767)
.-+.|+.. +.+++ +.+|..|+.++..+....+..+ .+ .+ .-..|+..|+. .+..+
T Consensus 40 ~~~sLlt~il~Dp~-~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~ 118 (182)
T PF13251_consen 40 ATPSLLTCILKDPS-PKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPV 118 (182)
T ss_pred CCcchhHHHHcCCc-hhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 34455554 44555 9999999999999988111111 11 11 22455666655 56788
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc---cCCChHHHHHHHHHHHhhcCCC
Q 004225 455 REKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN---KHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 455 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
..+.+.++..+....|..|- +.|.++.++..+. .+.|.+++..++.+++.+....
T Consensus 119 l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 119 LTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 88999999999988886542 4565555555443 6789999999999998887654
No 316
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=84.49 E-value=20 Score=37.52 Aligned_cols=69 Identities=14% Similarity=0.032 Sum_probs=47.5
Q ss_pred HHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHH
Q 004225 625 IQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGL 699 (767)
Q Consensus 625 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL 699 (767)
...++...++|.|. --.+..+-+|..|++.+..+-...+++.... +++.++..+.+++.-|..-|+.++
T Consensus 302 v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCCcchhhhhhhhC
Confidence 34555666777665 2224466789999999999987655544333 799999999999988888887764
No 317
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.28 E-value=2.7 Score=39.81 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHh--hhhHHHHhCC-------ChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhH-HHHHhcCC
Q 004225 413 PQLQLEAARALTNIAS--ENTNVVIDGG-------AVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDR-DLVLSEKA 481 (767)
Q Consensus 413 ~~~~~~a~~~L~~l~~--~~~~~~~~~~-------~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~ 481 (767)
-.-|..|..+|.+++- .+.+.+...+ .+..|++++.. +++-.|+.|+-.|.+++..+.... ....+.++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3568889999999998 5566665554 44556666655 788999999999999998776654 44467789
Q ss_pred HHHHHHHH
Q 004225 482 LIPLLAQL 489 (767)
Q Consensus 482 i~~L~~ll 489 (767)
|..|+.++
T Consensus 218 i~~Li~Fi 225 (257)
T PF12031_consen 218 ISHLIAFI 225 (257)
T ss_pred HHHHHHHH
Confidence 99999999
No 318
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.05 E-value=18 Score=40.77 Aligned_cols=121 Identities=20% Similarity=0.201 Sum_probs=76.3
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHHhc----CCchhHHHHHhcCCHHHHHHHHc---cCCChHHHHHHHHHHHh
Q 004225 439 AVPIFVKLLSS----PSDDVREKAVWALGNIAR----SSPRDRDLVLSEKALIPLLAQLN---KHAKPSMLRNATKTLSR 507 (767)
Q Consensus 439 ~l~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~~~~~L~~ 507 (767)
.+..+..++++ ..+.++..|.-+++++.. ..+.... .+....++.+.+.+. +..+.+-+..++.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 35566777765 356788888888888773 2111101 111235566666553 24566667789999999
Q ss_pred hcCCCCCCCccchhchHHHHHHHhc---CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 508 FCQGKPEPPFDQVRPALPALAQLVH---SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 508 l~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
+.... .++.+...+. .....+|..|+++|..++...+... .+.+..+..+...
T Consensus 473 ~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e 528 (574)
T smart00638 473 AGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAE 528 (574)
T ss_pred cCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCC
Confidence 88663 5666666665 2347899999999999886554433 3446666666544
No 319
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=83.81 E-value=32 Score=33.47 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=57.3
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCCCC
Q 004225 436 DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGKPE 514 (767)
Q Consensus 436 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~ 514 (767)
+..++|.++++++.++..+- ..++......-...-+.+-.|-++.+..++. ..-+.-+|..|+.++..++...+.
T Consensus 71 e~~A~~~li~l~~~~~~~~~----~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLE----DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcchHH----HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 45689999999977554211 1222211110001111223456777777884 233567899999999999988876
Q ss_pred CCccchhchHHHHHHHhcCCCHH
Q 004225 515 PPFDQVRPALPALAQLVHSNDND 537 (767)
Q Consensus 515 ~~~~~~~~~i~~L~~ll~~~~~~ 537 (767)
.+.....-+-..+-..+..++..
T Consensus 147 ~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 147 SREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred CHHHHHHHHHHHHHHHhccCchH
Confidence 66666555555555555555444
No 320
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.80 E-value=0.69 Score=26.89 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=13.4
Q ss_pred CCccceEeecCCCCcc
Q 004225 307 FPSLERLVVDDCPDMK 322 (767)
Q Consensus 307 ~~~L~~L~i~~c~~l~ 322 (767)
||+|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5788899999998876
No 321
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=83.24 E-value=65 Score=33.93 Aligned_cols=273 Identities=14% Similarity=0.090 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHh-----hhhHHHHhCCChHHHHHhhC----C-------CCHHHHHHHHHHHHHHhcCCchhHHHH
Q 004225 413 PQLQLEAARALTNIAS-----ENTNVVIDGGAVPIFVKLLS----S-------PSDDVREKAVWALGNIARSSPRDRDLV 476 (767)
Q Consensus 413 ~~~~~~a~~~L~~l~~-----~~~~~~~~~~~l~~L~~lL~----~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~ 476 (767)
.+-|..|...|.+... .....+. .-++.+++.++ . .+.++..+|+.+++.+..+ ++....+
T Consensus 7 ~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~~~l 83 (372)
T PF12231_consen 7 RSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIVSTL 83 (372)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHHhhC
Confidence 4667777777777666 1222222 22445555442 1 2678889999999998854 3333323
Q ss_pred HhcC---CHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhcc
Q 004225 477 LSEK---ALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLSD 551 (767)
Q Consensus 477 ~~~g---~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 551 (767)
-+.. .+...+..+. ...+..+...++|++..=--............++..+..+-+ -+...+....+.++.++..
T Consensus 84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~ 163 (372)
T PF12231_consen 84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLS 163 (372)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHH
Confidence 2221 3455555552 344556777777777642222111122222333333333333 4557788889999999987
Q ss_pred CChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccC---CHHHHHHH
Q 004225 552 GTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAG---NREQIQVV 628 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~---~~~~~~~~ 628 (767)
..+.....-. ...++.++..+-+... +++..|......+...-+ -.+.....+..+... +....+.
T Consensus 164 q~p~~M~~~~-~~W~~~l~~~l~~~~k--~ir~~a~~l~~~~~~~l~-------~~~~~s~~~~~~~~~~~~~~~~~~~- 232 (372)
T PF12231_consen 164 QFPQQMIKHA-DIWFPILFPDLLSSAK--DIRTKAISLLLEAKKCLG-------PNKELSKSVLEDLQRSLENGKLIQL- 232 (372)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhC-------hhHHHHHHHHHHhccccccccHHHH-
Confidence 7654322111 1367788877777776 777776655444431100 001111111111110 0011111
Q ss_pred HHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCH-HHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 629 IDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTH-EQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 629 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
+.+.+..++.+.+.....--+|...-...+... +.-. .-...+...-..++++|+.++..|..|=..++..
T Consensus 233 ----~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~--~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 233 ----YCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWE--HLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred ----HHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccH--hHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 345567777774443333334444433333221 1111 1122445555567789999999998887777763
No 322
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.05 E-value=13 Score=32.42 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=55.1
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC---CChHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH---DSNGICEKAVK 752 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~---~~~~v~~~a~~ 752 (767)
+++.|..-++++++.++..|+..|..+++..+. .+...+....++..+..+... .+++|++++..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~------------~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ 105 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGK------------PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALE 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh------------HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 566777788899999999999999999986543 245555555667778888764 57889999999
Q ss_pred HHHHh
Q 004225 753 ILEIY 757 (767)
Q Consensus 753 ~l~~~ 757 (767)
++..+
T Consensus 106 ll~~W 110 (133)
T cd03561 106 LILAW 110 (133)
T ss_pred HHHHH
Confidence 99876
No 323
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=83.01 E-value=8.3 Score=33.98 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=57.3
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhc-CCChHHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKR-HDSNGICEKAVKIL 754 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l 754 (767)
+++.|.+-+.++++.++..|+..|..+++..+. .+...+...++++.+..+.. ..+++|++++..++
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT------------HFHDEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH------------HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 566777778889999999999999999987443 24556667788888888876 57788999999999
Q ss_pred HHhc
Q 004225 755 EIYW 758 (767)
Q Consensus 755 ~~~~ 758 (767)
..+.
T Consensus 110 ~~W~ 113 (142)
T cd03569 110 QAWA 113 (142)
T ss_pred HHHH
Confidence 8763
No 324
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=82.92 E-value=7.1 Score=31.30 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 634 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
+...+..+.++.+.+|.++...|.+++...+ ....-..+++..+...++++|+.|-..|+.++..++...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 4556677788889999999999999998755 111122467888889999999999999999999999754
No 325
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.87 E-value=21 Score=32.47 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=71.9
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHhhh-hHHHHhCC--ChHHHHHhhCCC-CHHHHHHHHHHHHHHh---cCCc
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIASEN-TNVVIDGG--AVPIFVKLLSSP-SDDVREKAVWALGNIA---RSSP 470 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~--~l~~L~~lL~~~-~~~v~~~a~~~L~nl~---~~~~ 470 (767)
..+..+..++++.+ +.-+..++..+...+.+. .+.+.+.+ .+..++..|+.+ .+.+.+.|+.++..+. .+.+
T Consensus 25 ~l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 35667778888888 788888877777777633 44443333 466788888874 4667777777777766 4545
Q ss_pred hhHHHHHhc---CCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC
Q 004225 471 RDRDLVLSE---KALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP 515 (767)
Q Consensus 471 ~~~~~~~~~---g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 515 (767)
+..+.+... ++++.+++++ +. ......++.++..+....|..
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~-~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLL-QD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHH-hc--cccHHHHHHHHHHHHHHCCcc
Confidence 544333332 2455555555 22 566777777777776655443
No 326
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=82.35 E-value=9.7 Score=35.46 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHh--hhhHHHH----------------hCCChHHHHHhhCC------CCHHHHHHHHHHHHHHhcCC
Q 004225 414 QLQLEAARALTNIAS--ENTNVVI----------------DGGAVPIFVKLLSS------PSDDVREKAVWALGNIARSS 469 (767)
Q Consensus 414 ~~~~~a~~~L~~l~~--~~~~~~~----------------~~~~l~~L~~lL~~------~~~~v~~~a~~~L~nl~~~~ 469 (767)
.....++..|.|+++ +....++ +...+..|+.++.. ...+-....+.++.|++..
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~- 88 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL- 88 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC-
Confidence 345556777777777 2222222 12255666665543 2344557789999999965
Q ss_pred chhHHHHHhcC--C--HHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC
Q 004225 470 PRDRDLVLSEK--A--LIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP 515 (767)
Q Consensus 470 ~~~~~~~~~~g--~--i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 515 (767)
++.|+.+.+.. . +..|+.+. ++.+.--|.-+++++.|.|-+....
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft-~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFT-EHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHhhccHhHH
Confidence 77899888764 3 66777777 6677777888999999999886443
No 327
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.94 E-value=9.8 Score=33.31 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=55.7
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC------CChHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH------DSNGICEK 749 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~ 749 (767)
++..+..-+.++++.++..|+..|..++++.+.. +...+...+++..+..+... .++.|+++
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k 106 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER------------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK 106 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 5666777788999999999999999999876543 45566677778788888753 56889999
Q ss_pred HHHHHHHh
Q 004225 750 AVKILEIY 757 (767)
Q Consensus 750 a~~~l~~~ 757 (767)
+..++..+
T Consensus 107 il~li~~W 114 (139)
T cd03567 107 IIELLYSW 114 (139)
T ss_pred HHHHHHHH
Confidence 99999876
No 328
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=81.83 E-value=0.64 Score=49.95 Aligned_cols=37 Identities=30% Similarity=0.239 Sum_probs=17.0
Q ss_pred CCCCccceeecccccccccccCCCCcccCCCCccEEEeccCC
Q 004225 62 VMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCP 103 (767)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 103 (767)
..+++|++|++++- .++++.. ...++.|+.|++.++.
T Consensus 115 ~~~~~L~~L~ls~N-~I~~i~~----l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFN-KITKLEG----LSTLTLLKELNLSGNL 151 (414)
T ss_pred hhhhcchheecccc-ccccccc----hhhccchhhheeccCc
Confidence 34555666655542 2333322 2234445555555543
No 329
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.53 E-value=96 Score=37.98 Aligned_cols=130 Identities=9% Similarity=0.107 Sum_probs=64.6
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhh
Q 004225 605 GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLL 684 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll 684 (767)
.+|..|...+|.+......... =-........+.-+...+.+||.+++....++... ++...... +....+..
T Consensus 274 ~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~~---~~~~~l~~-- 346 (1266)
T KOG1525|consen 274 EVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKAS---TILLALRE-- 346 (1266)
T ss_pred HHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhHH---HHHHHHHh--
Confidence 5566666666655553222211 00112344555566677788888888877777665 33432221 11222222
Q ss_pred cCCCHHHHHH--HHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 685 LYADPEIVTI--CLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 685 ~~~~~~v~~~--al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
.+.|++++.. ++-....... +.-.+..- .+..+.+.+.+....||..|+.=+..+|.
T Consensus 347 ~~~D~~~rir~~v~i~~~~v~~-----------------~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 347 RDLDEDVRVRTQVVIVACDVMK-----------------FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hcCChhhhheeeEEEEEeehhH-----------------hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2334433333 2222222111 11111111 45556666777788888888887777776
No 330
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.35 E-value=20 Score=33.35 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=55.0
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhH
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR 473 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 473 (767)
.++.++++..+++ ..++..|..++.-+.. -+.. ..+|.++.+..++++.++..|...+..+....+...
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 4566777777888 8999999999988877 2222 268999999999999999999999999986655443
No 331
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.12 E-value=12 Score=40.17 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=76.0
Q ss_pred cCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 004225 397 SGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRD 474 (767)
Q Consensus 397 ~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 474 (767)
+|.+..++..+.+.+ ..+|..++.+|+.+.. ...+.....|.+..|..-+-+-.+.+|.+|..+|+.+-.....-..
T Consensus 90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 356666777777888 8999999999998888 4444555567777777666667889999999999998743222111
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
..+..+...++.+++.++|+.|+ .|+..++
T Consensus 169 -----~~~n~l~~~vqnDPS~EVRr~al---lni~vdn 198 (885)
T COG5218 169 -----RIVNLLKDIVQNDPSDEVRRLAL---LNISVDN 198 (885)
T ss_pred -----HHHHHHHHHHhcCcHHHHHHHHH---HHeeeCC
Confidence 13346677777788889998875 4555444
No 332
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=80.10 E-value=0.21 Score=54.49 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=56.4
Q ss_pred CcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccc
Q 004225 30 SFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRT 109 (767)
Q Consensus 30 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 109 (767)
-++.|++|+++.+. +..+ ..+..+++|++|+|++. .|..+|... ...+. |..|.+++...-+-
T Consensus 185 ll~ale~LnLshNk-~~~v----------~~Lr~l~~LkhLDlsyN-~L~~vp~l~--~~gc~-L~~L~lrnN~l~tL-- 247 (1096)
T KOG1859|consen 185 LLPALESLNLSHNK-FTKV----------DNLRRLPKLKHLDLSYN-CLRHVPQLS--MVGCK-LQLLNLRNNALTTL-- 247 (1096)
T ss_pred HHHHhhhhccchhh-hhhh----------HHHHhcccccccccccc-hhccccccc--hhhhh-heeeeecccHHHhh--
Confidence 34455566665553 3333 34455677777776652 233333211 22343 66677665432111
Q ss_pred cccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCC
Q 004225 110 TSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSA 167 (767)
Q Consensus 110 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (767)
....++.+|+.||++.+-.... +-.+.+..+..|+.|.+.|.+.
T Consensus 248 ---~gie~LksL~~LDlsyNll~~h-----------seL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 248 ---RGIENLKSLYGLDLSYNLLSEH-----------SELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ---hhHHhhhhhhccchhHhhhhcc-----------hhhhHHHHHHHHHHHhhcCCcc
Confidence 1113677888888875532211 2223456677888888888764
No 333
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=79.95 E-value=7.6 Score=36.18 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=67.6
Q ss_pred hhccCCHHHHHHHHHcCCHHHHHHHHhc---C--CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHH
Q 004225 616 NITAGNREQIQVVIDAGVIGPLVDLLQN---A--EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPE 690 (767)
Q Consensus 616 nl~~~~~~~~~~~~~~~~i~~L~~ll~~---~--~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 690 (767)
.+.+..++....++++.+--.+...+.. . ...+|..+..+++.+...++++.+..+....+++...++++.++.-
T Consensus 125 QclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSEl 204 (315)
T COG5209 125 QCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSEL 204 (315)
T ss_pred HHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHH
Confidence 3334445666666666553333333332 2 3468889999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhh
Q 004225 691 IVTICLKGLENILKVG 706 (767)
Q Consensus 691 v~~~al~aL~~l~~~~ 706 (767)
-+..|+.++..++.+.
T Consensus 205 SktvaifI~qkil~dD 220 (315)
T COG5209 205 SKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHHHHHHHHHhccc
Confidence 7888888888887643
No 334
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.90 E-value=1.3e+02 Score=34.48 Aligned_cols=292 Identities=17% Similarity=0.225 Sum_probs=154.3
Q ss_pred HHhhhcCC--CHHHHHHHHHHHHHhc------CCCh-HHHHhc---CchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hh
Q 004225 364 MLAGVWSD--DSGLQLEATTWFRKLL------LPPS-EKVIQS---GVVARFVEFLTREDNPQLQLEAARALTNIAS-EN 430 (767)
Q Consensus 364 l~~~l~s~--~~~~~~~a~~~L~~l~------~~~~-~~i~~~---g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~ 430 (767)
++..+.++ ++.++..|+.++.+.+ .+.. ..+.+. -+-..++.+.-+.. ..+|.+-..++.-++. +.
T Consensus 42 lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~DF 120 (960)
T KOG1992|consen 42 LLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRDF 120 (960)
T ss_pred HHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcccc
Confidence 34444432 6888999999999888 1111 222221 12234455555555 6899999999999987 44
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhc-CCchhH--------HHHHhcCCHHHHHHHHc--------cCC
Q 004225 431 TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIAR-SSPRDR--------DLVLSEKALIPLLAQLN--------KHA 493 (767)
Q Consensus 431 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~--------~~~~~~g~i~~L~~ll~--------~~~ 493 (767)
.+.. ...+|-|+.-+.+.|-.+....+.+-..+.. ..++.| +.+++. ...++..+++ ...
T Consensus 121 P~kW--ptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~-f~~Plt~Lf~~t~~l~~~~~~ 197 (960)
T KOG1992|consen 121 PDKW--PTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDR-FAEPLTDLFRKTMELIQRHAN 197 (960)
T ss_pred chhh--HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhhccc
Confidence 4433 2356777777776664443333333222221 111111 111111 1224444442 112
Q ss_pred ChH-------HHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCC------C-------HHHHHHHHHHHHhhccC
Q 004225 494 KPS-------MLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSN------D-------NDVLRYACEALSCLSDG 552 (767)
Q Consensus 494 ~~~-------~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~------~-------~~v~~~a~~~L~~l~~~ 552 (767)
+.. +..-++.....+...+ |..-...+...++...++++.+ | .+++...|..+.-.+..
T Consensus 198 ~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~k 277 (960)
T KOG1992|consen 198 DAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATK 277 (960)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHh
Confidence 222 2222333344444333 3322234456677777777621 1 46666778777776666
Q ss_pred ChhHHHHHHhcCcHHHHHHHhcCCCCC---CcccchHHHHHhhhhccCCcceeeh--hhhHHHHHH--HhhhccCCHHHH
Q 004225 553 TNDKIQAVIEADVCPRLVKLLLHPLPF---PFGLTPPLWTVRYIVKGDGFLTQCT--GIAKEACRT--ISNITAGNREQI 625 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~L~~lL~~~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l--~v~~~a~~~--l~nl~~~~~~~~ 625 (767)
.++..+.++. +++.....++.+..+. +.....|+..|.+++....+..-.. ++..+.|.. +.|+... ..-
T Consensus 278 YeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR--~eD 354 (960)
T KOG1992|consen 278 YEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILR--EED 354 (960)
T ss_pred hHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccc--hhh
Confidence 6666654443 4677777888766551 1244556777777775443321111 222222221 3333332 333
Q ss_pred HHHHHcCCHHHHHHHHhcCCchhHHH-HHHHHHHhhcC
Q 004225 626 QVVIDAGVIGPLVDLLQNAEFFTKKE-AARAISNAISG 662 (767)
Q Consensus 626 ~~~~~~~~i~~L~~ll~~~~~~v~~~-a~~~L~nl~~~ 662 (767)
.++++.+.+..+-+-++..+.+.|+. |+..+..++..
T Consensus 355 eElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~ 392 (960)
T KOG1992|consen 355 EELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKN 392 (960)
T ss_pred HHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHH
Confidence 46788889999999999888776555 55666666665
No 335
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.69 E-value=1.1e+02 Score=33.51 Aligned_cols=73 Identities=22% Similarity=0.200 Sum_probs=46.7
Q ss_pred hchHHHHHHHhc------CCCHHHHHHHHHHHHhhccCCh-hHHHHHHhcC--cHHHHHHHhcCCCCCCcccchHHHHHh
Q 004225 521 RPALPALAQLVH------SNDNDVLRYACEALSCLSDGTN-DKIQAVIEAD--VCPRLVKLLLHPLPFPFGLTPPLWTVR 591 (767)
Q Consensus 521 ~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~--~~~~L~~lL~~~~~~~~v~~~a~~~L~ 591 (767)
..++..|..++. ..+..+.+-|+..+..+..+.. .....+--.. +++.+...++..+. .+-...+..+.
T Consensus 249 ~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~--~v~~eIl~~i~ 326 (464)
T PF11864_consen 249 HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSP--RVDYEILLLIN 326 (464)
T ss_pred HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCC--eehHHHHHHHH
Confidence 345666777773 2346667778888877765541 1222221222 78888888888887 77778888877
Q ss_pred hhhc
Q 004225 592 YIVK 595 (767)
Q Consensus 592 ~l~~ 595 (767)
++..
T Consensus 327 ~ll~ 330 (464)
T PF11864_consen 327 RLLD 330 (464)
T ss_pred HHHh
Confidence 7773
No 336
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=78.58 E-value=87 Score=32.48 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc
Q 004225 450 PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN 490 (767)
Q Consensus 450 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~ 490 (767)
.|.++...+..+|+|+...++..++...+...+..+++.+.
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~ 149 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVL 149 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHH
Confidence 45688999999999999999999999988888888887773
No 337
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=78.57 E-value=1.3 Score=24.50 Aligned_cols=15 Identities=47% Similarity=0.507 Sum_probs=9.2
Q ss_pred CccEEeeecCCCcccc
Q 004225 7 NLTRLTLSCCMNLRCL 22 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l 22 (767)
+|++|++++| .++.+
T Consensus 1 ~L~~Ldls~n-~l~~i 15 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSI 15 (22)
T ss_dssp TESEEEETSS-EESEE
T ss_pred CccEEECCCC-cCEeC
Confidence 4666777766 45555
No 338
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=78.40 E-value=12 Score=37.45 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHhc-CC-ChHHHHhc-C-chHHHHhhccCC----CCHHHHHHHHHHHHHHHh---hhh-HHHHhC
Q 004225 370 SDDSGLQLEATTWFRKLL-LP-PSEKVIQS-G-VVARFVEFLTRE----DNPQLQLEAARALTNIAS---ENT-NVVIDG 437 (767)
Q Consensus 370 s~~~~~~~~a~~~L~~l~-~~-~~~~i~~~-g-~i~~L~~ll~~~----~~~~~~~~a~~~L~~l~~---~~~-~~~~~~ 437 (767)
+..+..+.-+++.+.++. ++ ....+... + .+-..+..+... + ..++..++..+.|++. ..+ ..-...
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~ 199 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSN-KNVRIALATLLLNLSVLLHKNRSDEEWQS 199 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHH-HHHHHHHHHHHHHHHHHHHHCTS-CCHHH
T ss_pred CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 366788899999999999 43 34444432 2 233333333333 4 8999999999999998 222 111111
Q ss_pred CChHHHHHhh-CC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHH
Q 004225 438 GAVPIFVKLL-SS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNA 501 (767)
Q Consensus 438 ~~l~~L~~lL-~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~ 501 (767)
..+..+++.+ .. .|++..+.++.++|++....+...+.....|+-..+-..-....++.+++.+
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 2455666633 33 7899999999999999977665554433334433333333234455555443
No 339
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=78.14 E-value=31 Score=36.12 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=82.4
Q ss_pred HhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHHhcC
Q 004225 395 IQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLS------SPSDDVREKAVWALGNIARS 468 (767)
Q Consensus 395 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~~L~nl~~~ 468 (767)
.+.+-.+-+-.-+..++...-|.+|+..+..++....+.+.. -+...+..++. +.+..-+..|+..++.++..
T Consensus 207 fEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~-i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k 285 (370)
T PF08506_consen 207 FEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTS-ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASK 285 (370)
T ss_dssp HHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred HccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh
Confidence 333333333344444343456778888888888722222110 11122333333 36778899999999999965
Q ss_pred CchhH------------HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCH
Q 004225 469 SPRDR------------DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDN 536 (767)
Q Consensus 469 ~~~~~------------~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 536 (767)
....+ ..+....+++.|. -..+..+-++..|++.+..+...- .......++|.+++.+++++.
T Consensus 286 ~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l---~~~~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 286 GSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL---PKEQLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp S--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-H
T ss_pred hccccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCCc
Confidence 42211 1122222333322 112456678888999998887652 345667799999999999998
Q ss_pred HHHHHHHHHH
Q 004225 537 DVLRYACEAL 546 (767)
Q Consensus 537 ~v~~~a~~~L 546 (767)
-|...|+.++
T Consensus 361 vv~tyAA~~i 370 (370)
T PF08506_consen 361 VVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHH
T ss_pred chhhhhhhhC
Confidence 8888888764
No 340
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=77.73 E-value=5.3 Score=37.92 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhc--CCChHHHHhc-------CchHHHHhhccCCCCHHHHHHHHHHHHHHHh----hhhHHHHhCCC
Q 004225 373 SGLQLEATTWFRKLL--LPPSEKVIQS-------GVVARFVEFLTREDNPQLQLEAARALTNIAS----ENTNVVIDGGA 439 (767)
Q Consensus 373 ~~~~~~a~~~L~~l~--~~~~~~i~~~-------g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~ 439 (767)
.+-|..|+.+|++++ ..+.+-+... .++..|++++....++-.|+-|+..|.+++. -.+....+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 456888999999998 4444444333 3566777878776668999999999999999 22344558899
Q ss_pred hHHHHHhhCCCCHH
Q 004225 440 VPIFVKLLSSPSDD 453 (767)
Q Consensus 440 l~~L~~lL~~~~~~ 453 (767)
+..|+.++++.+..
T Consensus 218 i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 218 ISHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999875433
No 341
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.15 E-value=25 Score=30.59 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=56.0
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCC--hHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDS--NGICEKAVKI 753 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~--~~v~~~a~~~ 753 (767)
+++.|..-+.++++.++..|+..|..+++..+. .+...+...++++.|..+..++. +.|++++..+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~------------~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l 105 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS------------KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH------------HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 566677778889999999999999999987443 24566777888899998877644 3399999999
Q ss_pred HHHhc
Q 004225 754 LEIYW 758 (767)
Q Consensus 754 l~~~~ 758 (767)
+..+.
T Consensus 106 i~~W~ 110 (133)
T smart00288 106 IQEWA 110 (133)
T ss_pred HHHHH
Confidence 98763
No 342
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=77.10 E-value=74 Score=33.33 Aligned_cols=92 Identities=21% Similarity=0.210 Sum_probs=61.7
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHH-HHhhcCCCCCCCc
Q 004225 440 VPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKT-LSRFCQGKPEPPF 517 (767)
Q Consensus 440 l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~-L~~l~~~~~~~~~ 517 (767)
+.+++.=+.. ....+|..++.-|+.-+.+ +.++..+...|.++.+++.+...++..+...++.+ +.-++.+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4566665553 4567888888888888854 78899999999999999999544444344444444 4455555544444
Q ss_pred cchhchHHHHHHHhc
Q 004225 518 DQVRPALPALAQLVH 532 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~ 532 (767)
.........++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 445566666677776
No 343
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=76.75 E-value=9.3 Score=34.52 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=73.8
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCc
Q 004225 439 AVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPF 517 (767)
Q Consensus 439 ~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 517 (767)
.++.|.++|+. .+..+|.+++.++|.+-.-+|...+.+... .+ ..-....+......... .....+..+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~l~----~~~~~~~~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDISLP----MMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhHHh----hccCCCchHH
Confidence 46778888877 469999999999999987777544422111 00 00000111111111111 1111123344
Q ss_pred cchhchHHHHHHHhcCCC-HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhh
Q 004225 518 DQVRPALPALAQLVHSND-NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRY 592 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~ 592 (767)
.....++..|+..++++. ..-...++.++.++........-.+. ..++|.++..+++.+. ..+...++-|+.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~--~~~e~~~~qL~~ 154 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPD--SLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCH--HHHHHHHHHHHH
Confidence 555667788888887655 22233344455554422221122122 2488999999998776 444444444433
No 344
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.71 E-value=13 Score=32.35 Aligned_cols=74 Identities=12% Similarity=0.025 Sum_probs=60.1
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC--CHHHHHHHHHHHHHHHHhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA--DPEIVTICLKGLENILKVG 706 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~aL~~l~~~~ 706 (767)
++..+..-++++++.++..|...|-.++..+.......+.+.+++..|..++... .+.|+..++..+......-
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4556777788999999999999999999877677777778888999999998864 2348999999888887643
No 345
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.58 E-value=58 Score=37.20 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=80.6
Q ss_pred HHHHHHcCCHHHHHHHHhcC--------CchhHHHHHHHHHHhhcCCCHHHHHHHHHc--------CChHHHHhhhc---
Q 004225 625 IQVVIDAGVIGPLVDLLQNA--------EFFTKKEAARAISNAISGGTHEQIKYLVRK--------GCIKPLCDLLL--- 685 (767)
Q Consensus 625 ~~~~~~~~~i~~L~~ll~~~--------~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~--------~~i~~L~~ll~--- 685 (767)
...+.+.+.+..++++...+ ..+..+.|..+|+.+..- |+....+++. .++..+++.-.
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i--P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~ 671 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI--PDIQKALAHATLSNNRAYDGIAIILDAANGSN 671 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec--chHHHHHHHHHhhcccccCceEEEeecccccc
Confidence 34556677788888877643 235677777777766553 4444444432 34555555443
Q ss_pred -CCCHHHHHHHHHHHHHHHHhh-hhhhc---------------cCCcc------ccccHHHHHHHhhchHHHHHHHhcCC
Q 004225 686 -YADPEIVTICLKGLENILKVG-EAEMN---------------TGTAN------RYFNHYARLVEAAEGFKKIEDLKRHD 742 (767)
Q Consensus 686 -~~~~~v~~~al~aL~~l~~~~-~~~~~---------------~~~~~------~~~~~~~~~l~~~g~~~~l~~l~~~~ 742 (767)
..|++++..|+.+|.|+.... +++.. ++... |........++...|+..|..|++-.
T Consensus 672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k 751 (1516)
T KOG1832|consen 672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYK 751 (1516)
T ss_pred cccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Confidence 248999999999999987643 11111 11000 01112223346678899999998775
Q ss_pred C-----hHHHHHHHHHHHHhcCCC
Q 004225 743 S-----NGICEKAVKILEIYWSCG 761 (767)
Q Consensus 743 ~-----~~v~~~a~~~l~~~~~~~ 761 (767)
+ ..++..|..+|-.+-..+
T Consensus 752 ~P~t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 752 NPPTTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred CCCCcHHHHHHHHHHHHhccccCc
Confidence 5 348888888776655544
No 346
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.57 E-value=48 Score=34.40 Aligned_cols=93 Identities=22% Similarity=0.181 Sum_probs=54.7
Q ss_pred HhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhc--CCchh
Q 004225 395 IQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIAR--SSPRD 472 (767)
Q Consensus 395 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~--~~~~~ 472 (767)
+...++..+..++..+.++.....++.++..-+... ..-+...++..+..-+++..+.+|..-+..++.... .+...
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 444566777777777665666666666666555411 111223455667777777777788888888888774 11111
Q ss_pred HHHHHhcCCHHHHHHHHc
Q 004225 473 RDLVLSEKALIPLLAQLN 490 (767)
Q Consensus 473 ~~~~~~~g~i~~L~~ll~ 490 (767)
... -...++.+++.+.
T Consensus 98 ~~~--~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 98 LKF--AEPFLPKLLQSLK 113 (339)
T ss_pred HHH--HHHHHHHHHHHHH
Confidence 111 1236677777774
No 347
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=75.13 E-value=18 Score=31.00 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=29.6
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
+++|+.+.+.+ .++.+ +...+..+.+|+.+.+.+ .+..+.. ......++|+++.+.+ .+..++..
T Consensus 11 ~~~l~~i~~~~--~~~~I-~~~~F~~~~~l~~i~~~~--~~~~i~~--------~~F~~~~~l~~i~~~~--~~~~i~~~ 75 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKI-GENAFSNCTSLKSINFPN--NLTSIGD--------NAFSNCKSLESITFPN--NLKSIGDN 75 (129)
T ss_dssp -TT--EEEETS--T--EE--TTTTTT-TT-SEEEESS--TTSCE-T--------TTTTT-TT-EEEEETS--TT-EE-TT
T ss_pred CCCCCEEEECC--CeeEe-Chhhcccccccccccccc--cccccce--------eeeecccccccccccc--cccccccc
Confidence 44566666653 24444 223344555666666654 2343310 1222344566666643 23333322
Q ss_pred CCcccCCCCccEEEec
Q 004225 85 DLDILEFPSLKELRIS 100 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~ 100 (767)
. ...+++|+.+.+.
T Consensus 76 ~--F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 76 A--FSNCTNLKNIDIP 89 (129)
T ss_dssp T--TTT-TTECEEEET
T ss_pred c--ccccccccccccC
Confidence 1 2235666666653
No 348
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=74.52 E-value=16 Score=34.20 Aligned_cols=98 Identities=6% Similarity=0.162 Sum_probs=67.2
Q ss_pred hhhHHHHHHHhhhcc-CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHc--------C
Q 004225 605 GIAKEACRTISNITA-GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRK--------G 675 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~--------~ 675 (767)
..|..++.+++.+.. +++..+..+....++|...++++.++.--+..|+..+..+..+ ....+++.+. .
T Consensus 161 yLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~ 238 (315)
T COG5209 161 YLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNL 238 (315)
T ss_pred eeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHH
Confidence 567788889998888 5667777788889999999999999998899999998888764 4555554442 1
Q ss_pred ChHHHHh-hhcCCCHHHHHHHHHHHHHHHH
Q 004225 676 CIKPLCD-LLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 676 ~i~~L~~-ll~~~~~~v~~~al~aL~~l~~ 704 (767)
++..++. +...+...+.+.++.+-.+++.
T Consensus 239 vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 239 VLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 1222222 1223455666666666555553
No 349
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=74.45 E-value=28 Score=31.68 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=73.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCC-ChHHHHhcC--chHHHHhhccCCCCHHHHHHHHHHHHHHHh------hhh
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLP-PSEKVIQSG--VVARFVEFLTREDNPQLQLEAARALTNIAS------ENT 431 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g--~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~------~~~ 431 (767)
+..+...+++.+++.+-.++..++..+.. ..+.+.+.+ .+..+++.++.++.+.+...|+.++..+.. +..
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 44567778899999999999999888833 345554443 588899999998878899999999999988 223
Q ss_pred HHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHHhcCCc
Q 004225 432 NVVIDGGAVPIFVKLLSS--PSDDVREKAVWALGNIARSSP 470 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~ 470 (767)
+.+.. ..+|.+++.+-. ++......++.+|..+....|
T Consensus 107 Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 107 REIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 33332 234444443222 214566777777777765333
No 350
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=74.21 E-value=23 Score=35.65 Aligned_cols=121 Identities=14% Similarity=0.161 Sum_probs=74.6
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc------------CCCHHHHHHHHHHHH
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL------------YADPEIVTICLKGLE 700 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~------------~~~~~v~~~al~aL~ 700 (767)
++|.++.++++.++.+|..++.+|.++........-..+.+.|..+.+.+.+. +....+...|.-++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999998644333233566776665555432 345678888999999
Q ss_pred HHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 004225 701 NILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYW 758 (767)
Q Consensus 701 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 758 (767)
.++.......... ....+.+.+ ..|.+..+..-...++++++....+.+..+.
T Consensus 200 ~L~~~~~~~~~~~----r~~~l~~~l-~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 200 SLLKTQENDDSNP----RSTWLDKIL-REGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHHHhhccCCccc----chHHHHHHH-HHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 8877532111100 222233333 3444444333333334676666666555443
No 351
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.06 E-value=2.6e+02 Score=35.59 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=84.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCCcc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFD 518 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~ 518 (767)
...++.-|..+++..+..+..+++.++..-+.. ..-.+..+..+.-+.+..++-.|..-.-+++.+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 445566677789999999999999998543321 1112345677777755566666666566666665554 333445
Q ss_pred chhchHHHHHHHhcCCC-HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcC
Q 004225 519 QVRPALPALAQLVHSND-NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLH 575 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 575 (767)
.....+..+..+.+++. +.|+..++.++..+.+.........++ .-+..+.+++-+
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls 1011 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLS 1011 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCC
Confidence 55667778888887665 599999999999998765544443333 233444444443
No 352
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=74.03 E-value=76 Score=29.52 Aligned_cols=139 Identities=18% Similarity=0.228 Sum_probs=85.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhh---HH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENT---NV 433 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~---~~ 433 (767)
++.+++...+++..++..|+..+.... ..+.. .+|.++.+..+++ +.++..|...+..+...+. ..
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 677788888999999999999998876 22222 3789999999988 9999999999999987221 11
Q ss_pred HHhCCChHHHHHhhCC--CCHH--H---HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccC-------CChHHHH
Q 004225 434 VIDGGAVPIFVKLLSS--PSDD--V---REKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKH-------AKPSMLR 499 (767)
Q Consensus 434 ~~~~~~l~~L~~lL~~--~~~~--v---~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~~~~~ 499 (767)
-+..| +..-.++-.. .+.. . .......+..+...+...|+.+ +..+++.+... ....-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence 11122 2222222111 1111 1 3445556666666555566554 56677777322 1334455
Q ss_pred HHHHHHHhhcCCC
Q 004225 500 NATKTLSRFCQGK 512 (767)
Q Consensus 500 ~~~~~L~~l~~~~ 512 (767)
...++..|++.-+
T Consensus 157 ~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 157 FLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHhcCC
Confidence 5666666666543
No 353
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=73.25 E-value=26 Score=29.81 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=57.9
Q ss_pred HhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhhhcCC-----
Q 004225 614 ISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR-KGCIKPLCDLLLYA----- 687 (767)
Q Consensus 614 l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~-~~~i~~L~~ll~~~----- 687 (767)
|.+++..++..... ++..|.+-|+..++.|+..|..+|-+++..++++....+.+ ..+|..+...-...
T Consensus 25 ia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~G 99 (122)
T cd03572 25 IAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKG 99 (122)
T ss_pred HHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccC
Confidence 44444444444443 56678888899999999999999999999988787777655 33444444433211
Q ss_pred ---CHHHHHHHHHHHHHHHH
Q 004225 688 ---DPEIVTICLKGLENILK 704 (767)
Q Consensus 688 ---~~~v~~~al~aL~~l~~ 704 (767)
...||..|-.++..+..
T Consensus 100 d~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 100 DSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cchhHHHHHHHHHHHHHHhc
Confidence 33677777777766653
No 354
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=72.43 E-value=1.8e+02 Score=33.17 Aligned_cols=202 Identities=15% Similarity=0.133 Sum_probs=103.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc---cCCChHHHHHHHHHHHhhcCCC---
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN---KHAKPSMLRNATKTLSRFCQGK--- 512 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~~--- 512 (767)
++..+.+++......- ..|+..+..+.......... .+..+..++. ...++.++..|+.+++.+....
T Consensus 396 av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 4555666666633222 23444555544332111111 3455556662 1245678888888877765332
Q ss_pred -------CCCCccchhchHHHHHHHhc----CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCc
Q 004225 513 -------PEPPFDQVRPALPALAQLVH----SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPF 581 (767)
Q Consensus 513 -------~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~ 581 (767)
...........++.+...+. ..|.+.+..++.+|+|+... ..++.+..++........
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-H
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccch
Confidence 11133334445555555444 56778888999999998532 255667777766621000
Q ss_pred ccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--CchhHHHHHHHHHHh
Q 004225 582 GLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA--EFFTKKEAARAISNA 659 (767)
Q Consensus 582 v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~nl 659 (767)
.+|..|++++..++...++.. .+.+..++.+. +.++|..|..+|...
T Consensus 539 -----------------------~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 539 -----------------------FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp -----------------------HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 677888888888877655443 35677777654 457888887666552
Q ss_pred hcCCCHHHHHHHHHcCChHHHHhhhc-CCCHHHHHHHHHHH
Q 004225 660 ISGGTHEQIKYLVRKGCIKPLCDLLL-YADPEIVTICLKGL 699 (767)
Q Consensus 660 ~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL 699 (767)
-- +... +..+...+. +++.+|..-....|
T Consensus 588 ~P--~~~~---------l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 588 NP--SPSV---------LQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp -----HHH---------HHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred CC--CHHH---------HHHHHHHHhhCchHHHHHHHHHhc
Confidence 11 2222 333444444 45666665554443
No 355
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=72.19 E-value=1.3e+02 Score=31.46 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=56.4
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHH
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDL 475 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~ 475 (767)
-+..+++-+.+.....+|..++--|..-+. +.+..+..+|.+..+++.+.. ++..+...++.++..+...+......
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 356666666644445677766555554444 788899999999999999855 44434444444444443333334444
Q ss_pred HHhcCCHHHHHHHHc
Q 004225 476 VLSEKALIPLLAQLN 490 (767)
Q Consensus 476 ~~~~g~i~~L~~ll~ 490 (767)
+.+.+....++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 445666666677773
No 356
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=72.14 E-value=0.85 Score=48.61 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=68.2
Q ss_pred ccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccc
Q 004225 200 NNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVI 279 (767)
Q Consensus 200 ~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 279 (767)
--|+.|-+.+ ++++.++..++..+.|..|+.+.| ++..++.. .+++.+|+.|.+.... +.+++.+...
T Consensus 143 lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq--l~~l~slr~l~vrRn~-l~~lp~El~~------- 210 (722)
T KOG0532|consen 143 LPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ--LGYLTSLRDLNVRRNH-LEDLPEELCS------- 210 (722)
T ss_pred CcceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhchHH--hhhHHHHHHHHHhhhh-hhhCCHHHhC-------
Confidence 3467777765 345667777778888888888765 45555433 4567888888877633 6666655432
Q ss_pred cccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 280 TFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 280 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
-.|.+|+++ |.++.++|.. ...+..|++|.+.+.|
T Consensus 211 --LpLi~lDfS-cNkis~iPv~--fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 211 --LPLIRLDFS-CNKISYLPVD--FRKMRHLQVLQLENNP 245 (722)
T ss_pred --Cceeeeecc-cCceeecchh--hhhhhhheeeeeccCC
Confidence 356677775 7788888753 4567778888776554
No 357
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=70.32 E-value=83 Score=34.71 Aligned_cols=126 Identities=13% Similarity=0.016 Sum_probs=78.3
Q ss_pred HHHHHHcCCHHHHHH----HHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHH
Q 004225 625 IQVVIDAGVIGPLVD----LLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLE 700 (767)
Q Consensus 625 ~~~~~~~~~i~~L~~----ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~ 700 (767)
....+..++.+.+-. --...+...|..+-.+|+.++... +.... -+.+.+..|++-+++..++++..+-.||.
T Consensus 363 l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~-p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALs 439 (501)
T PF13001_consen 363 LRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRA-PSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALS 439 (501)
T ss_pred HHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccC-ccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 334555566665510 011235578999999999999873 33221 23467888888888889999999999999
Q ss_pred HHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCCcc
Q 004225 701 NILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCGVI 763 (767)
Q Consensus 701 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 763 (767)
.++..-...... ...-.... ....+.....+....+|..|++-.+++|+-+++
T Consensus 440 sl~~af~~~~~~------~~~~~~~~----~~~l~~~~~~~~~~~~R~~avk~an~~fpf~d~ 492 (501)
T PF13001_consen 440 SLAPAFKDLPDD------EDEQKRLL----LELLLLSYIQSEVRSCRYAAVKYANACFPFSDV 492 (501)
T ss_pred HHHHHHhccccc------hhHHHHHH----HHHHHHhhccchhHHHHHHHHHHHHHhCCccch
Confidence 998753321100 00000011 011223334466778999999999999997654
No 358
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=70.07 E-value=28 Score=30.56 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=54.1
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC-CChH---HHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH-DSNG---ICEKAV 751 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~---v~~~a~ 751 (767)
++..|..-+.++++.++..|+..|..+++..+. .+...+....+++.+..+..+ .... |++++.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~------------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP------------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH------------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence 566677778889999999999999999987543 345566666788888887654 4433 899999
Q ss_pred HHHHHh
Q 004225 752 KILEIY 757 (767)
Q Consensus 752 ~~l~~~ 757 (767)
.++..+
T Consensus 111 ~ll~~W 116 (140)
T PF00790_consen 111 ELLQEW 116 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 359
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=69.45 E-value=86 Score=35.92 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=104.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
.|..++..+.|.+..+...+-..+........+.. ++..|+++.-+.. -..|+.+|..+-..+-+. .
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~y~~~t~----s~~~~~il~~~~~P~~K~-----~ 71 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPW----LVNGLVDYYLSTN----SQRALEILVGVQEPHDKH-----L 71 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHH----HHHHHHHHHhhcC----cHHHHHHHHhcCCccHHH-----H
Confidence 47788999999999999998888888773333222 2566666544444 122444544332211122 2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
+..|-.++. .+.-|..++..|+.+....+...-.+.+...+..|++.|..+.+..+...|+.+|..+.-.-+..-...
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~ 149 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPH 149 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHH
Confidence 344555554 456788899999999988788778888889999999999888888999999999888875544433333
Q ss_pred hhchHHHHHHHh
Q 004225 520 VRPALPALAQLV 531 (767)
Q Consensus 520 ~~~~i~~L~~ll 531 (767)
....+..+..++
T Consensus 150 L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 150 LPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 360
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=67.72 E-value=52 Score=26.75 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=55.9
Q ss_pred cCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHH
Q 004225 674 KGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKI 753 (767)
Q Consensus 674 ~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~ 753 (767)
...+..|++-+..+.......++..+..+++.. .....+.+.|+.+-+.++...-+++.+....++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~--------------~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP--------------YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc--------------HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 456677777777777778888999999988642 247788899999999999999999999888888
Q ss_pred HHH
Q 004225 754 LEI 756 (767)
Q Consensus 754 l~~ 756 (767)
++.
T Consensus 95 l~~ 97 (98)
T PF14726_consen 95 LDQ 97 (98)
T ss_pred Hhc
Confidence 764
No 361
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=67.69 E-value=53 Score=42.79 Aligned_cols=249 Identities=15% Similarity=0.142 Sum_probs=134.3
Q ss_pred hhcCCCHHHHHHHHHHHHHhc--CCC----hHHHH--hcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCC
Q 004225 367 GVWSDDSGLQLEATTWFRKLL--LPP----SEKVI--QSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGG 438 (767)
Q Consensus 367 ~l~s~~~~~~~~a~~~L~~l~--~~~----~~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 438 (767)
.+..++.+.+..|+..++.+. ... ...-+ ...++..+..+-..+.++.++......+. ...-....+.+
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~ 565 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPD 565 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCch
Confidence 345677888888877776665 111 11111 22334444444333333666654444433 21112234455
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
.+..+...+.+..-.++..+...+++++..++.+.-..+..-.+..+-.+- .+.-..+.+.+..-+..+....+..-..
T Consensus 566 ~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~i~~ 644 (2341)
T KOG0891|consen 566 LLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVLISP 644 (2341)
T ss_pred hHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHHHHh
Confidence 566677778888888999999999999987774322211111111111111 1111112222222222222111111222
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
.....+..++..+++.+..+...+..++..||...........+ ..++.+.+.+.+.+. ..-+..++++++++.....
T Consensus 645 ~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~-~~rr~aslk~l~~l~s~~~ 722 (2341)
T KOG0891|consen 645 YVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSS-LGKRLAALKALGQLESSTG 722 (2341)
T ss_pred hcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhh-hhchhHHHHHhhhhhcccc
Confidence 33445566777778888888899999999999766544433334 455666666654432 2677889999999986555
Q ss_pred cceeeh--------------------hhhHHHHHHHhhhccCC
Q 004225 599 FLTQCT--------------------GIAKEACRTISNITAGN 621 (767)
Q Consensus 599 ~~~~~l--------------------~v~~~a~~~l~nl~~~~ 621 (767)
...+.. .++.+++..+++....+
T Consensus 723 ~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 723 YVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred eEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 432222 66777777777665543
No 362
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.38 E-value=2.1e+02 Score=31.93 Aligned_cols=143 Identities=13% Similarity=0.146 Sum_probs=78.6
Q ss_pred CHHHHHhhhc-CCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hh-hHHHH
Q 004225 360 SLPGMLAGVW-SDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-EN-TNVVI 435 (767)
Q Consensus 360 ~i~~l~~~l~-s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~-~~~~~ 435 (767)
.+..+.+.|. +.|+..+..|-++|..+. ++.. +..---++...+.|--+..|..+|.++.. .. .....
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~spec--------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~q 77 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSESPEC--------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQ 77 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHH--------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHH
Confidence 3455556654 788999999999999988 4442 12222234444447888899999999988 11 11111
Q ss_pred hCCChHHHHHhhCCCCHHH----HHHHHHHHHHHhcCCc--hhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhc
Q 004225 436 DGGAVPIFVKLLSSPSDDV----REKAVWALGNIARSSP--RDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 436 ~~~~l~~L~~lL~~~~~~v----~~~a~~~L~nl~~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 509 (767)
.-++-..++.++....|.. ...-+..++.+..-.. ..++...=.+.|..+.+.+ +..+.+--..++..|..+.
T Consensus 78 rldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 78 RLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHHHHHH
Confidence 2233456777776644333 3333334444442111 1111122234667777777 5555555555666666665
Q ss_pred CC
Q 004225 510 QG 511 (767)
Q Consensus 510 ~~ 511 (767)
.+
T Consensus 157 qe 158 (1082)
T KOG1410|consen 157 QE 158 (1082)
T ss_pred HH
Confidence 43
No 363
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=67.12 E-value=75 Score=31.91 Aligned_cols=138 Identities=14% Similarity=0.206 Sum_probs=81.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhH-HHHHhcCCHHHHHHHHc---c--------CCChHHHHHHHHHHH
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR-DLVLSEKALIPLLAQLN---K--------HAKPSMLRNATKTLS 506 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~~L~~ll~---~--------~~~~~~~~~~~~~L~ 506 (767)
++|.++.++++.++.++.+++.++..+....+... ..+.+.|..+.+-+.+. . .++..+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999997554332 23566675554444442 1 345667777777877
Q ss_pred hhcCCC----CCCCccchhchH-HHHHHHhc-C---CCHHHHHHHHHHHHhhccCCh-hHHHHHHhcCcHHHHHHHhcCC
Q 004225 507 RFCQGK----PEPPFDQVRPAL-PALAQLVH-S---NDNDVLRYACEALSCLSDGTN-DKIQAVIEADVCPRLVKLLLHP 576 (767)
Q Consensus 507 ~l~~~~----~~~~~~~~~~~i-~~L~~ll~-~---~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~ 576 (767)
.++... ...........+ ..++.-+. . ..++++...+..+..+...-. .....+ ..+++.+.+.+.++
T Consensus 200 ~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL--~rii~~l~~~l~np 277 (282)
T PF10521_consen 200 SLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHL--QRIIPVLSQILENP 277 (282)
T ss_pred HHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHhcCC
Confidence 775421 112222222222 22333332 2 246777777776666654322 122222 24777787777776
Q ss_pred CC
Q 004225 577 LP 578 (767)
Q Consensus 577 ~~ 578 (767)
..
T Consensus 278 f~ 279 (282)
T PF10521_consen 278 FG 279 (282)
T ss_pred Cc
Confidence 53
No 364
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=67.05 E-value=1.7e+02 Score=30.58 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=64.4
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc----------CCCHHHHHHHHHHHHhhcc
Q 004225 482 LIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH----------SNDNDVLRYACEALSCLSD 551 (767)
Q Consensus 482 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~----------~~~~~v~~~a~~~L~~l~~ 551 (767)
-..++.++.+.....-+..++.++.-++++............+..|+.+.. ..|..+...++.||+|+..
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 356667773333456677788888888888755555555556666665543 2346889999999999999
Q ss_pred CChhHHHHHHhcCcHHHHHHHhc
Q 004225 552 GTNDKIQAVIEADVCPRLVKLLL 574 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~~L~~lL~ 574 (767)
+++...+...+......+.+.+.
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~ 149 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVL 149 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHH
Confidence 98887777777666666666553
No 365
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=66.69 E-value=31 Score=29.97 Aligned_cols=75 Identities=8% Similarity=-0.029 Sum_probs=61.3
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC---CCHHHHHHHHHHHHHHHHhhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY---ADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~al~aL~~l~~~~~ 707 (767)
++..|..-++++++.++..|...|-.++..+.......+....++..|+.++.. .++.|+..++..+........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456677788899999999999999999988766666776676888889999875 478999999999998886543
No 366
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=66.62 E-value=1.3e+02 Score=29.20 Aligned_cols=200 Identities=18% Similarity=0.160 Sum_probs=118.2
Q ss_pred HHHHHh-hhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhC
Q 004225 361 LPGMLA-GVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDG 437 (767)
Q Consensus 361 i~~l~~-~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~ 437 (767)
+|.++. .-+..+++.+...+..|..++ +.+ ....-+++.+..+...+. .+.+..+.+.+..+-. +.+..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~---~~~~~v~~~L~~L~~~~~-~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN---VCVPPVLQTLVSLVEQGS-LELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc---cchhHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHHhCchHH----
Confidence 455555 345788999999999999999 441 111123566666666666 5666666777776666 22221
Q ss_pred CChHHHHHh--h------C--CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHh
Q 004225 438 GAVPIFVKL--L------S--SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSR 507 (767)
Q Consensus 438 ~~l~~L~~l--L------~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 507 (767)
+.+..++.. + . +...+.....+.++..++...|+.-. ..++.+..++.++.++.++..++.++..
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 333333333 1 1 12345556667788888887776221 2566777777446677788899999999
Q ss_pred hcCCCCCCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCCh--hHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 508 FCQGKPEPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTN--DKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 508 l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
++... ..........+..-+. ...+.+.+..+..+..+....- +.... ....++..+.++..+.+.
T Consensus 149 Lc~~~----vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 149 LCEAE----VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHh----hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhcccccc
Confidence 99442 2223334444444444 3346666655555555443322 22222 234678888888887775
No 367
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=66.60 E-value=2.1e+02 Score=31.65 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=63.0
Q ss_pred hhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhc--CCCHHHHHHHHH--cCChHHHH
Q 004225 606 IAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAIS--GGTHEQIKYLVR--KGCIKPLC 681 (767)
Q Consensus 606 v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~--~~~~~~~~~l~~--~~~i~~L~ 681 (767)
-....||++|.|+..-.+..+.-+=-+++..|..+......+--+++ +-+|+.. +-.+.....-.. .-++..|+
T Consensus 499 nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAV--vASnIMyvvGQYpRFLkahw~FLkTVv~KLF 576 (1053)
T COG5101 499 NLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAV--VASNIMYVVGQYPRFLKAHWSFLKTVVKKLF 576 (1053)
T ss_pred hHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchh--hecceeeeeccchHHHHHHHHHHHHHHHHHH
Confidence 34557899999887433322221112356666665543322111111 1122221 112222221111 24788899
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHH
Q 004225 682 DLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLV 726 (767)
Q Consensus 682 ~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l 726 (767)
+.++.....++..|+.....+.+........++.| ..+++...+
T Consensus 577 EFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~g-esEpFI~~I 620 (1053)
T COG5101 577 EFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEG-ESEPFIVYI 620 (1053)
T ss_pred HHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCC-CCCcHHHHH
Confidence 99999999999999999999988765544433333 334444443
No 368
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=66.57 E-value=2.6e+02 Score=32.67 Aligned_cols=113 Identities=15% Similarity=0.112 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccC
Q 004225 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTG 713 (767)
Q Consensus 634 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~ 713 (767)
...+...+..++...-+....++.+++.-....... ...-.+.-..-.+..-..+......+|.++...
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~-------- 511 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDF-------- 511 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 445555566666666666666666665421000000 000111111111111123344445555555543
Q ss_pred CccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 004225 714 TANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 714 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 761 (767)
.++.....+.+.++...+..++-+++++++..|.+++...|+.+
T Consensus 512 ----~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 512 ----DPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred ----CHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 34557888888899999999999999999999999999999744
No 369
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=66.52 E-value=9.7 Score=33.52 Aligned_cols=74 Identities=11% Similarity=0.019 Sum_probs=57.6
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC-CHH---HHHHHHHHHHHHHHhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA-DPE---IVTICLKGLENILKVG 706 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~---v~~~al~aL~~l~~~~ 706 (767)
++..|.+-+.++++.++..|...|-.++..+.......+....++..|..++.+. ... |++.++..+......-
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999888876566666666677888899988743 333 8888988888877654
No 370
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=65.46 E-value=81 Score=34.92 Aligned_cols=276 Identities=18% Similarity=0.096 Sum_probs=133.2
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLS 478 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 478 (767)
++..+=+.+-+++ +.++.-|.-.++-.....++. -..++..|...+++++..++..|+..|+-.-.++ .++.+.
T Consensus 416 gL~qldkylys~~-~~ikaGaLLgigi~~~gv~ne--~dpalALLsdyv~~~~s~~ri~aIlGLglayaGs--q~e~V~- 489 (878)
T KOG2005|consen 416 GLEQLDKYLYSDE-SYIKAGALLGIGISNSGVFNE--CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGS--QREEVL- 489 (878)
T ss_pred hHHHHHHHhhcCC-chhhhccceeeeeeccccccc--cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCC--chHHHH-
Confidence 3444545555555 445444433333222211110 1124455666778888888888888888655443 233332
Q ss_pred cCCHHHHHHHHcc-CCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc--CCCHHHHHHHHHHHHhhccCChh
Q 004225 479 EKALIPLLAQLNK-HAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH--SNDNDVLRYACEALSCLSDGTND 555 (767)
Q Consensus 479 ~g~i~~L~~ll~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~ 555 (767)
..|..++.+ ....++...+..+++.+..+. +.....+.++..++.--. .++.-.|--++. |+-+--+..+
T Consensus 490 ----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGs--cn~dvts~ilqtlmekse~El~d~~~RFL~LG-L~llflgkqe 562 (878)
T KOG2005|consen 490 ----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGS--CNEDVTSSILQTLMEKSETELEDQWFRFLALG-LALLFLGKQE 562 (878)
T ss_pred ----HHHhHHhcCCCCchhHHHHHHhhcceeEEec--CChHHHHHHHHHHHHhhhhhhhchHHHHHHHH-HHHHHhcccc
Confidence 245556632 223457777777777777664 333334444444443222 223333333332 3333323222
Q ss_pred HHHHHHhc-----C----cHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHH
Q 004225 556 KIQAVIEA-----D----VCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQ 626 (767)
Q Consensus 556 ~~~~~~~~-----~----~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~ 626 (767)
..+.+.+. + ....++......-........-...+........... .-...|+--++-++-+.+-..+
T Consensus 563 ~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e---~~~~~avLgiAliAMgeeig~e 639 (878)
T KOG2005|consen 563 SVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLE---SEQELAVLGIALIAMGEEIGSE 639 (878)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchh---hhccchhhhhhhhhhhhhhhhH
Confidence 22222110 1 1222222222111100111111111111111111000 1111222223323333222222
Q ss_pred HHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 004225 627 VVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENIL 703 (767)
Q Consensus 627 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~ 703 (767)
-++..+-.+++.+++.+|+..=.|++-++.. +|+. ++++.|-++.++++.++...++.++.-+-
T Consensus 640 -----M~lR~f~h~l~yge~~iRravPLal~llsvS-NPq~-------~vlDtLsk~shd~D~eva~naIfamGLiG 703 (878)
T KOG2005|consen 640 -----MVLRHFGHLLHYGEPHIRRAVPLALGLLSVS-NPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIG 703 (878)
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHhhhccC-CCcc-------hHHHHHHHhccCcchHHHHHHHHHhcccc
Confidence 2466777888899999999999999988776 4432 36888999999999999888888876543
No 371
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=65.01 E-value=47 Score=27.90 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=50.5
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHH-----h-cCCChHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDL-----K-RHDSNGICEK 749 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l-----~-~~~~~~v~~~ 749 (767)
++..|..-+.+.++.++..|+..|..+++.++.. +...+....++..+..+ . ...+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 5666666777889999999999999999976543 34445444445444332 1 2357889999
Q ss_pred HHHHHHHhc
Q 004225 750 AVKILEIYW 758 (767)
Q Consensus 750 a~~~l~~~~ 758 (767)
+..+++.+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 999998764
No 372
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=64.00 E-value=54 Score=28.84 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=56.3
Q ss_pred HHHHHHHHh-cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhhhcC---CCHHHHHHHHHHHHHHHHhh
Q 004225 634 IGPLVDLLQ-NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKP-LCDLLLY---ADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 634 i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~v~~~al~aL~~l~~~~ 706 (767)
+..+..-+. +.++.++..|...|-.++..+....-..+...+++.. |++++.. ....|+..++..+......-
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 444555555 4578899999988888888777777778888899987 9999863 34588999999998888643
No 373
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=62.98 E-value=27 Score=41.48 Aligned_cols=235 Identities=15% Similarity=0.167 Sum_probs=133.3
Q ss_pred HHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc--CC--ChHHHHhcCchHH--------HHhhccCCCCHHHHHHHHHH
Q 004225 355 IQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL--LP--PSEKVIQSGVVAR--------FVEFLTREDNPQLQLEAARA 422 (767)
Q Consensus 355 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~--~~~~i~~~g~i~~--------L~~ll~~~~~~~~~~~a~~~ 422 (767)
|+..+-+..|++.+-++..+++.-|+-.++.+. .. -.....+.-++.. +-++..++--..+++.++++
T Consensus 73 w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~ 152 (1549)
T KOG0392|consen 73 WPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQA 152 (1549)
T ss_pred ccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHH
Confidence 344445778888888999999999999999887 11 1111122111111 11222211123678889999
Q ss_pred HHHHHh-hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHH--hcCCHHHHHHHHccCCChHHHH
Q 004225 423 LTNIAS-ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVL--SEKALIPLLAQLNKHAKPSMLR 499 (767)
Q Consensus 423 L~~l~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~ 499 (767)
|..+.. .....+. ..+..+.+++..++.+++...+..+...... .++.+. -..+++..+..+ ++.+.+++.
T Consensus 153 L~~~l~~~~~s~~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~ai---r~d~l~~~~~~vl~~~i~~L-~ds~ddv~~ 226 (1549)
T KOG0392|consen 153 LGAYLKHMDESLIK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVAI---RQDLLFQLLNLVLDFVIEGL-EDSDDDVRS 226 (1549)
T ss_pred HHHHHHhhhhHhhH--HHHHHHHHHHcCcchhheechHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh-hhcchHHHH
Confidence 998887 2222222 3567788888887777666555555443321 111111 112556666777 788899999
Q ss_pred HHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCH--HHHHHHHHHHHhhccCChh--H-HHHHHhcCcHHHHHHHhc
Q 004225 500 NATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDN--DVLRYACEALSCLSDGTND--K-IQAVIEADVCPRLVKLLL 574 (767)
Q Consensus 500 ~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~--~-~~~~~~~~~~~~L~~lL~ 574 (767)
.|+.++..++..-.......+..++..+...+..-|. .-.......+..++...+. . .+.-...+.+|.+...+.
T Consensus 227 ~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~ 306 (1549)
T KOG0392|consen 227 VAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLR 306 (1549)
T ss_pred HHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHH
Confidence 9999988777654333334444555555555443221 1112222333444443311 0 111112478888888888
Q ss_pred CCCCCCcccchHHHHHhhhhccC
Q 004225 575 HPLPFPFGLTPPLWTVRYIVKGD 597 (767)
Q Consensus 575 ~~~~~~~v~~~a~~~L~~l~~~~ 597 (767)
+.-. .++..++..+..+...+
T Consensus 307 ~~i~--sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 307 HTIS--SVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHH--HHHHHHHHHHHHHHhcC
Confidence 8877 77777887777776444
No 374
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=62.57 E-value=1.3e+02 Score=27.75 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=56.5
Q ss_pred CCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 004225 632 GVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 632 ~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 707 (767)
-.+|.+++=+...+...+--|...+..+...+..+.+-.++- ..+.+|...+.+.++++...++.+|..++...+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 367888888888888777777777777776533444443332 478888899999999999999999999965433
No 375
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=62.32 E-value=1.6e+02 Score=35.55 Aligned_cols=235 Identities=14% Similarity=0.108 Sum_probs=115.7
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC-CCCccchhchHHHHHHHhc--------C--CCHHHHHHHHHHHHhh
Q 004225 481 ALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP-EPPFDQVRPALPALAQLVH--------S--NDNDVLRYACEALSCL 549 (767)
Q Consensus 481 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-~~~~~~~~~~i~~L~~ll~--------~--~~~~v~~~a~~~L~~l 549 (767)
.++.|++-+ -++..++|.-+.-++..+..... .............++..+. . --..++++++++|..+
T Consensus 78 ~~e~L~~~~-~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 78 FLEELVNDL-FEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHh-cCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 344555555 45555666666666655544331 1111112222222222221 1 1157888899998888
Q ss_pred ccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHH
Q 004225 550 SDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVI 629 (767)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~ 629 (767)
..+-.+... . ..+..+.+++..+.. +++.-.+-.+.+.. .++.. ....+
T Consensus 157 l~~~~~s~~--~--~~~~il~q~~~q~~w--~ir~Ggll~iky~~----------air~d--------------~l~~~- 205 (1549)
T KOG0392|consen 157 LKHMDESLI--K--ETLDILLQMLRQPNW--EIRHGGLLGIKYNV----------AIRQD--------------LLFQL- 205 (1549)
T ss_pred HHhhhhHhh--H--HHHHHHHHHHcCcch--hheechHHHHHHHH----------HHHHH--------------HHHHH-
Confidence 766433211 1 356677777777766 44443333322221 11111 11111
Q ss_pred HcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHH----HHHHHh
Q 004225 630 DAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGL----ENILKV 705 (767)
Q Consensus 630 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL----~~l~~~ 705 (767)
-..+++..++.+++.+.+++..|+.++.-++........+.+. .++..+...+..-+. ...+...+ ..++..
T Consensus 206 ~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~ldd--l~~s~~si~~ll~~l~~~ 281 (1549)
T KOG0392|consen 206 LNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDD--LSSSTASIMHLLDELCIE 281 (1549)
T ss_pred HHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhh--cchhhHHHHHHHHHHhhh
Confidence 1136778888899999999999999988777642111111111 133333333332221 11111111 111111
Q ss_pred hhhhhccCCccccccHHHHHH-HhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Q 004225 706 GEAEMNTGTANRYFNHYARLV-EAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCGV 762 (767)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 762 (767)
.+.. .+-... .+.|.++.+-..+.|.=..++..+.+.+..+.+.+.
T Consensus 282 ~evl-----------~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 282 NEVL-----------DLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHH-----------HHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1000 001111 124667777777788778888888888888877654
No 376
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=62.06 E-value=2e+02 Score=29.72 Aligned_cols=169 Identities=14% Similarity=0.092 Sum_probs=110.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhcc-CChhHHHHHHhc-C-cHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcc
Q 004225 524 LPALAQLVHSNDNDVLRYACEALSCLSD-GTNDKIQAVIEA-D-VCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFL 600 (767)
Q Consensus 524 i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~ 600 (767)
+..+.+.+......+...+++.+..++. .+......+.+. + -.+.+.+++..... +.... .......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~--~~~~~--------~~~~~~~ 127 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKK--EKEKD--------SESSKSK 127 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccc--ccccc--------ccccccC
Confidence 7778888888888889999999999998 554555555442 2 24556666644332 00000 0000000
Q ss_pred eeehhhhHHHHHH-HhhhccCCHHHHHHHHH-cCCHHHHHHHHhcCCchhHHHHHHHHHHhh-cCC--CHHHHHHHHHcC
Q 004225 601 TQCTGIAKEACRT-ISNITAGNREQIQVVID-AGVIGPLVDLLQNAEFFTKKEAARAISNAI-SGG--THEQIKYLVRKG 675 (767)
Q Consensus 601 ~~~l~v~~~a~~~-l~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~-~~~--~~~~~~~l~~~~ 675 (767)
. ++|...+.. ++.+..+++..+..+++ .+.+..+.+-|..+..++......++..-+ ... .......+....
T Consensus 128 -~--siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~ 204 (330)
T PF11707_consen 128 -P--SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEW 204 (330)
T ss_pred -c--CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHH
Confidence 1 466666644 44444466777776664 567888888888888888888888888543 321 233444556667
Q ss_pred ChHHHHhhhcCCCH----HHHHHHHHHHHHHHHh
Q 004225 676 CIKPLCDLLLYADP----EIVTICLKGLENILKV 705 (767)
Q Consensus 676 ~i~~L~~ll~~~~~----~v~~~al~aL~~l~~~ 705 (767)
++..|..+....++ .+++.+-..|..++..
T Consensus 205 ~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 205 TLSQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 88889998887777 8899999999998864
No 377
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.45 E-value=2.3e+02 Score=38.49 Aligned_cols=282 Identities=14% Similarity=0.091 Sum_probs=131.1
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh------hhhHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHHhcC
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS------ENTNVVIDG----GAVPIFVKLLSSPSDDVREKAVWALGNIARS 468 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~------~~~~~~~~~----~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 468 (767)
.++.|+..+..++ ..+...+..++..+.. ..+...... +.++.+.++..++...-+....-.+.-+..+
T Consensus 985 ~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 985 FLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 3566677777666 6777777777766665 111111111 2233333333333333444444444444444
Q ss_pred CchhHHHHHhcCCHHHHHHHHccC------CChHHHHHHHHHHHhhcCCC---CCCCccchhchHHHHHHHhcCCCHHHH
Q 004225 469 SPRDRDLVLSEKALIPLLAQLNKH------AKPSMLRNATKTLSRFCQGK---PEPPFDQVRPALPALAQLVHSNDNDVL 539 (767)
Q Consensus 469 ~~~~~~~~~~~g~i~~L~~ll~~~------~~~~~~~~~~~~L~~l~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~ 539 (767)
.+...-.=....++..+...+... ...+..+..+.-+...+... +.........++..++.-+.+++..|+
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 331111111223555555555311 11222222222222222222 223334556777888888888888999
Q ss_pred HHHHHHHHhhccCChhHHHHHHh--cC--cHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceee------------
Q 004225 540 RYACEALSCLSDGTNDKIQAVIE--AD--VCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQC------------ 603 (767)
Q Consensus 540 ~~a~~~L~~l~~~~~~~~~~~~~--~~--~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~------------ 603 (767)
..+..+|.+++.........+.+ .+ ..|...+.+..... .++.--+.++.+.....+..-+.
T Consensus 1144 ~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~--~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPF--TIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCH--HHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHH
Confidence 99999999988654211111111 00 01111111111111 22222222222222211111110
Q ss_pred ------------h-------------hhhHHHHHHHhhhccCCHH--HHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHH
Q 004225 604 ------------T-------------GIAKEACRTISNITAGNRE--QIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAI 656 (767)
Q Consensus 604 ------------l-------------~v~~~a~~~l~nl~~~~~~--~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 656 (767)
+ ..+..+...++......+. ....-...+++..++..+....+++...+..++
T Consensus 1222 ~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l 1301 (3550)
T KOG0889|consen 1222 ALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGL 1301 (3550)
T ss_pred HhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 0 2233444444433332111 111122346788888889999999999999888
Q ss_pred HHhhcCCCHHHHHHHHHcCChHHHHhhhc
Q 004225 657 SNAISGGTHEQIKYLVRKGCIKPLCDLLL 685 (767)
Q Consensus 657 ~nl~~~~~~~~~~~l~~~~~i~~L~~ll~ 685 (767)
.+.... ++..-...++.+ .++|..-+.
T Consensus 1302 ~~v~~~-~~~~~ke~lq~~-lrplL~~l~ 1328 (3550)
T KOG0889|consen 1302 RKVLAQ-DVKLPKELLQSH-LRPLLMNLS 1328 (3550)
T ss_pred Hhhhhc-cccccHHHHHhh-HHHHHHhhh
Confidence 888765 344444555553 444444443
No 378
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=60.76 E-value=2.2e+02 Score=29.93 Aligned_cols=224 Identities=14% Similarity=0.009 Sum_probs=116.5
Q ss_pred ChHHHHHHHHHHHhhcCCCCC---CCccchhchHHHHHHHhcC--CCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHH
Q 004225 494 KPSMLRNATKTLSRFCQGKPE---PPFDQVRPALPALAQLVHS--NDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPR 568 (767)
Q Consensus 494 ~~~~~~~~~~~L~~l~~~~~~---~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 568 (767)
+..+..+|+.+++.+..+... .......-++...+..+.+ .+..+....+|++..=--... ++....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-----~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-----IMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-----ccchhhHHH
Confidence 678888999999988866521 1222222345555555543 345677777777765222211 222233333
Q ss_pred HHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchh
Q 004225 569 LVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFT 648 (767)
Q Consensus 569 L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 648 (767)
++..+..-.. .+. +. .+..+++.++.++....++....-.+ -.++.++..+-+....+
T Consensus 134 l~~~l~~i~~--~~~-------------s~------si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~i 191 (372)
T PF12231_consen 134 LLAALHNIKN--RFP-------------SK------SIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDI 191 (372)
T ss_pred HHHHHHHhhc--cCC-------------ch------hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHH
Confidence 4433332221 000 00 45566777777776655544332211 26788888877777788
Q ss_pred HHHHHHHHHHhhc--CCCHHHHHHHH---Hc----C-----ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 004225 649 KKEAARAISNAIS--GGTHEQIKYLV---RK----G-----CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGT 714 (767)
Q Consensus 649 ~~~a~~~L~nl~~--~~~~~~~~~l~---~~----~-----~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~ 714 (767)
+..|...+..+.. +.+......+. +. + +.+.|.+++.+++......-+|.....+-......
T Consensus 192 r~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~---- 267 (372)
T PF12231_consen 192 RTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLD---- 267 (372)
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhh----
Confidence 7776655555432 21222222221 11 1 23335666666444444444555544443221100
Q ss_pred ccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 715 ANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 715 ~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
.-++. ...+.-.+...++.++.+|..|..+.+.+
T Consensus 268 ----~w~~~-----n~wL~v~e~cFn~~d~~~k~~A~~aW~~l 301 (372)
T PF12231_consen 268 ----SWEHL-----NEWLKVPEKCFNSSDPQVKIQAFKAWRRL 301 (372)
T ss_pred ----ccHhH-----hHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 01111 12245566778999999999999988876
No 379
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=60.51 E-value=5.9 Score=42.57 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=27.9
Q ss_pred cCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 61 IVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 61 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
+..+.+|+.|++.+- +++.+... ...+++|++|++++.. ++.. .+...++.|+.|++.+|.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~---l~~~~~L~~L~ls~N~-I~~i----~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENL---LSSLVNLQVLDLSFNK-ITKL----EGLSTLTLLKELNLSGNL 151 (414)
T ss_pred cccccceeeeecccc-chhhcccc---hhhhhcchheeccccc-cccc----cchhhccchhhheeccCc
Confidence 344556666665542 23322220 1345666666665532 1111 111244556666666554
No 380
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.45 E-value=1.5e+02 Score=34.91 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=75.5
Q ss_pred ChHHHHH-hhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCc
Q 004225 439 AVPIFVK-LLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPF 517 (767)
Q Consensus 439 ~l~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 517 (767)
++..|-. +|+..+.+.+...+..+..+....+++-...-+.--++.++.-+ ......++...+..+......-..
T Consensus 467 AvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnm-egfPsslqvkiLkilEyAVtvvnc--- 542 (2799)
T KOG1788|consen 467 AVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNM-EGFPSSLQVKILKILEYAVTVVNC--- 542 (2799)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhh-cCCChHHHHHHHHHHHHHHhhhcc---
Confidence 4555555 56778889999999999999887777665555556778887777 444445555555554332211100
Q ss_pred cchhchHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcC
Q 004225 518 DQVRPALPALAQLVHSN-DNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLH 575 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 575 (767)
+-.+..+. |.-+++.+ ...+....+.....+...+....+.+.+.|+++.+...++.
T Consensus 543 vPeqELlS-LCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkq 600 (2799)
T KOG1788|consen 543 VPEQELLS-LCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQ 600 (2799)
T ss_pred CcHHHHHH-HHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 01112222 22233322 23444444455555555555555666677888877766654
No 381
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=59.11 E-value=35 Score=29.07 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=37.8
Q ss_pred cccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDE 277 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 277 (767)
..+|+.+.+.+ .+..+... ...+++|+.+.+.+ .+..+... .+.++++|+.+++.+ .+..+.......
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~-~F~~~~~l~~i~~~~--~~~~i~~~~F~~---- 79 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDN-AFSNCKSLESITFPN--NLKSIGDNAFSN---- 79 (129)
T ss_dssp -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TT-TTTT-TT-EEEEETS--TT-EE-TTTTTT----
T ss_pred CCCCCEEEECC--CeeEeChhhcccccccccccccc--ccccccee-eeecccccccccccc--cccccccccccc----
Confidence 34666666653 23333222 23445677777755 24444332 244566677777743 233332222110
Q ss_pred cccccccceEeecCCCCcccccCCCccccCCccceEeec
Q 004225 278 VITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVD 316 (767)
Q Consensus 278 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~ 316 (767)
+++|+.+.+.. +++.+.... ...+ .|+.+.+.
T Consensus 80 ---~~~l~~i~~~~--~~~~i~~~~-f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 ---CTNLKNIDIPS--NITEIGSSS-FSNC-NLKEINIP 111 (129)
T ss_dssp ----TTECEEEETT--T-BEEHTTT-TTT--T--EEE-T
T ss_pred ---cccccccccCc--cccEEchhh-hcCC-CceEEEEC
Confidence 45666666642 344444331 1223 55555543
No 382
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.95 E-value=3.3e+02 Score=33.65 Aligned_cols=151 Identities=11% Similarity=0.040 Sum_probs=82.0
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
...+++|.|..=|.+++..+|..|...++.+......... -.........+.-+.+.+. +
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~--~----------------- 315 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISV--E----------------- 315 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCCh--h-----------------
Confidence 3467889998888899999999999999998876543322 0012344555555666666 4
Q ss_pred cceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 004225 599 FLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIK 678 (767)
Q Consensus 599 ~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~ 678 (767)
+|.+++....++....+...... ...+.--....+++++.....++.-+.. .+..-.++.. .+.
T Consensus 316 -------vR~~~v~~~~~~l~~~~~~~~~~-----~~~~~l~~~~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~ 379 (1266)
T KOG1525|consen 316 -------VRMECVESIKQCLLNNPSIAKAS-----TILLALRERDLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLK 379 (1266)
T ss_pred -------hhhhHHHHhHHHHhcCchhhhHH-----HHHHHHHhhcCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHH
Confidence 44444444444444333332211 1111111123344444433322221111 1111122222 455
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 679 PLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 679 ~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
..-+-+.+....||..|+..|..+.+.
T Consensus 380 ~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 380 LVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 555666778888999888888877763
No 383
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=58.34 E-value=2e+02 Score=28.58 Aligned_cols=126 Identities=15% Similarity=0.199 Sum_probs=69.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
.+..+.+.++.+++..+ .....++. ..+++.+++|.|+..-. + +++-..++..|.++.-
T Consensus 14 ~LkdL~r~lr~dd~~~~-~v~r~lg~------~~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~----------- 72 (266)
T PF04821_consen 14 CLKDLKRFLRRDDEDQR-DVRRQLGE------WNIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW----------- 72 (266)
T ss_pred HHHHHHHHHHHhCcchH-HHHHHHHH------hchhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC-----------
Confidence 36667777777777666 56666665 45667777777765433 3 6777778888877753
Q ss_pred hHHHHHhhCC--CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc----------cCCChHHHHHHHHHHHh
Q 004225 440 VPIFVKLLSS--PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN----------KHAKPSMLRNATKTLSR 507 (767)
Q Consensus 440 l~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----------~~~~~~~~~~~~~~L~~ 507 (767)
|..+- ... .+...+.........+. .++..+.+.+++..++..+. ...+..+.+.++..+.|
T Consensus 73 -P~~~~-~~~~~~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRN 146 (266)
T PF04821_consen 73 -PIELL-VESQPKDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRN 146 (266)
T ss_pred -CHHHh-ccCCCCChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHH
Confidence 22221 111 12222222222222222 24555655556666665552 11244566677777777
Q ss_pred hcCCC
Q 004225 508 FCQGK 512 (767)
Q Consensus 508 l~~~~ 512 (767)
+..-+
T Consensus 147 lL~Ip 151 (266)
T PF04821_consen 147 LLAIP 151 (266)
T ss_pred HhcCC
Confidence 76553
No 384
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=58.28 E-value=92 Score=33.60 Aligned_cols=78 Identities=18% Similarity=0.110 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhcCCHH-HHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc-hhchHHHHHH
Q 004225 452 DDVREKAVWALGNIARSSPRDRDLVLSEKALI-PLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ-VRPALPALAQ 529 (767)
Q Consensus 452 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~-~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~-~~~~i~~L~~ 529 (767)
...|..|+.+||.++..-+...... ... .|+..| ++.+..-|..+.-++...+.......... .....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~----~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE----IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH----HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 4567788899998886533221111 223 577788 77777777778888888776652221111 3455666666
Q ss_pred HhcCC
Q 004225 530 LVHSN 534 (767)
Q Consensus 530 ll~~~ 534 (767)
.+..+
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 66633
No 385
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=57.85 E-value=3.2e+02 Score=30.82 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=78.2
Q ss_pred CHHHHHHHHcc---CCChHHHHHHHHHHHhhcCCC----CCCCccchhchHHHHHHHhc----CCCHHHHHHHHHHHHhh
Q 004225 481 ALIPLLAQLNK---HAKPSMLRNATKTLSRFCQGK----PEPPFDQVRPALPALAQLVH----SNDNDVLRYACEALSCL 549 (767)
Q Consensus 481 ~i~~L~~ll~~---~~~~~~~~~~~~~L~~l~~~~----~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l 549 (767)
.++.+..++.. ..+..++..|+-+++.+.... +.+........++.+...+. ..+.+.+..++.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 45666677731 235678888888888776432 22222334556666666554 45666677888888887
Q ss_pred ccCChhHHHHHHhcCcHHHHHHHhc-CCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHH
Q 004225 550 SDGTNDKIQAVIEADVCPRLVKLLL-HPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVV 628 (767)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~ 628 (767)
.... .++.+..++. +...+. .+|..|++++..++...+..
T Consensus 474 g~~~-----------~i~~l~~~l~~~~~~~~------------------------~iR~~Av~Alr~~a~~~p~~---- 514 (574)
T smart00638 474 GHPS-----------SIKVLEPYLEGAEPLST------------------------FIRLAAILALRNLAKRDPRK---- 514 (574)
T ss_pred CChh-----------HHHHHHHhcCCCCCCCH------------------------HHHHHHHHHHHHHHHhCchH----
Confidence 6532 2233444444 221100 56777777777666533332
Q ss_pred HHcCCHHHHHHHHhcC--CchhHHHHHHHHHHh
Q 004225 629 IDAGVIGPLVDLLQNA--EFFTKKEAARAISNA 659 (767)
Q Consensus 629 ~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~nl 659 (767)
+-+.+..++.+. ++++|..|+.+|...
T Consensus 515 ----v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 515 ----VQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred ----HHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 334566666654 567888887776653
No 386
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=57.81 E-value=34 Score=30.16 Aligned_cols=141 Identities=17% Similarity=0.155 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHcc
Q 004225 413 PQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK 491 (767)
Q Consensus 413 ~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~ 491 (767)
+.++.+.+.++..++. ++.... .+.++.+++.+.. ++......+.+|..+..+-.++++.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~W--p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~---------------- 62 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQW--PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRS---------------- 62 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS--TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCC----------------
T ss_pred hhHHHHHHHHHHHHHHHHChhhC--chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhch----------------
Confidence 3566777788888877 432221 3466777777766 4555566677777666321110000
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCC----CHHHHHHHHHHHHhhccCChhHHHHHHhcCcHH
Q 004225 492 HAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSN----DNDVLRYACEALSCLSDGTNDKIQAVIEADVCP 567 (767)
Q Consensus 492 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 567 (767)
.....-+...-.++..- ...++..+.+.+... +.++...++.++......- ....+...++++
T Consensus 63 ~~~~~r~~~l~~~l~~~-----------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~ 129 (148)
T PF08389_consen 63 SLSQERRRELKDALRSN-----------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIINSNLLN 129 (148)
T ss_dssp HSHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHH
T ss_pred hhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhccHHHHH
Confidence 00011111111111111 112344444444422 2778888888888877643 344466667888
Q ss_pred HHHHHhcCCCCCCcccchHHHH
Q 004225 568 RLVKLLLHPLPFPFGLTPPLWT 589 (767)
Q Consensus 568 ~L~~lL~~~~~~~~v~~~a~~~ 589 (767)
.+.+++.++ +.+..|+.+
T Consensus 130 ~~~~~l~~~----~~~~~A~~c 147 (148)
T PF08389_consen 130 LIFQLLQSP----ELREAAAEC 147 (148)
T ss_dssp HHHHHTTSC----CCHHHHHHH
T ss_pred HHHHHcCCH----HHHHHHHHh
Confidence 888888443 445555544
No 387
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=57.40 E-value=1.3e+02 Score=32.69 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhc
Q 004225 665 HEQIKYLVRKGCIKPLCDLLL-YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKR 740 (767)
Q Consensus 665 ~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~ 740 (767)
......+.+.++++.|++++. +.+++++..|...|..++....+.....+....++++.+.|.....++.|...+-
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence 355667778899999999997 4578899999999999988655443321111256889999999999999888765
No 388
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=55.37 E-value=34 Score=23.98 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=30.7
Q ss_pred HHHHHhhchHHHHHHHhcC-CChHHHHHHHHHHHHh
Q 004225 723 ARLVEAAEGFKKIEDLKRH-DSNGICEKAVKILEIY 757 (767)
Q Consensus 723 ~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~ 757 (767)
.+.+.+.|.-..+..+..+ ++++++..|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6788899999999999999 9999999999999865
No 389
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=53.46 E-value=2e+02 Score=27.17 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=90.6
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHHhcCCchhHHHHHh
Q 004225 401 ARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSS-PSDDVREKA-VWALGNIARSSPRDRDLVLS 478 (767)
Q Consensus 401 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a-~~~L~nl~~~~~~~~~~~~~ 478 (767)
..+..+..++. .+.+..|+.++......... ..++.+-.++.. ++.++.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~-----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--------- 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTE-----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--------- 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H-----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH---------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH-----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh---------
Confidence 44455667777 78888887777554331100 134566666666 667776665 55566554221
Q ss_pred cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHH
Q 004225 479 EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQ 558 (767)
Q Consensus 479 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 558 (767)
....+.+.+.+ .++++-+++.++-++...... ......+..+...+.+++.-++..+.|+|..++...++...
T Consensus 119 ~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 119 PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHH
Confidence 12345555666 889999999998777665544 23345555666667788899999999999999988887666
Q ss_pred HHHhc
Q 004225 559 AVIEA 563 (767)
Q Consensus 559 ~~~~~ 563 (767)
.++..
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 390
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=52.80 E-value=83 Score=31.27 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHhcC--CHHHHHHHHccCC---ChHHHHHHHHHHHhhcCCC-CCC-Cccchhc
Q 004225 450 PSDDVREKAVWALGNIARSSPRDRDLVLSEK--ALIPLLAQLNKHA---KPSMLRNATKTLSRFCQGK-PEP-PFDQVRP 522 (767)
Q Consensus 450 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~~~---~~~~~~~~~~~L~~l~~~~-~~~-~~~~~~~ 522 (767)
..+..+.-++++++|+... +..++.+.+.. .+-..+..+..+. +..++..++..+.|++... ... .......
T Consensus 122 ~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 5678889999999999976 44555555432 2333333331222 6788889999999998654 122 2333344
Q ss_pred hHHHHHHHhc--CCCHHHHHHHHHHHHhhccCChhHHH
Q 004225 523 ALPALAQLVH--SNDNDVLRYACEALSCLSDGTNDKIQ 558 (767)
Q Consensus 523 ~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~ 558 (767)
.+..+...+. ..|++....++-+++++...++...+
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 6666666443 36899999999999999976654444
No 391
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=52.80 E-value=93 Score=27.36 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=51.7
Q ss_pred ChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHH-HHHHhcC---CChHHHHHH
Q 004225 676 CIKPLCDLLL-YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKK-IEDLKRH---DSNGICEKA 750 (767)
Q Consensus 676 ~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~~---~~~~v~~~a 750 (767)
++..|..-+. +.++.++..|+..|..++++.+.. +...+...++++. |..+... .+.+|+.++
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki 106 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV 106 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence 4455555555 468999999999999999876543 3455566677876 7778753 345899999
Q ss_pred HHHHHHhc
Q 004225 751 VKILEIYW 758 (767)
Q Consensus 751 ~~~l~~~~ 758 (767)
..++..+.
T Consensus 107 l~li~~W~ 114 (141)
T cd03565 107 LALIQAWA 114 (141)
T ss_pred HHHHHHHH
Confidence 99998763
No 392
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=52.08 E-value=23 Score=28.03 Aligned_cols=67 Identities=10% Similarity=0.248 Sum_probs=44.7
Q ss_pred HhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHh----cCCCHHHHHHHHHHHH
Q 004225 477 LSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLV----HSNDNDVLRYACEALS 547 (767)
Q Consensus 477 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~L~ 547 (767)
.+...+.++..++....+.++|+..+.++.++..... .....+-+.+...+ .++++++...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3455778899988677899999999999999987642 11222344444443 3556777777666553
No 393
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=51.94 E-value=2.9e+02 Score=28.57 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCC
Q 004225 455 REKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSN 534 (767)
Q Consensus 455 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~ 534 (767)
|...+.+|..+.. .+ +...++..+..++.+..++......+.++..=+..- .......++..+.+-+++.
T Consensus 4 r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred HHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCC
Confidence 3344455555554 22 223366778888877778888888888776544332 2334467788888888888
Q ss_pred CHHHHHHHHHHHHhhcc--CChhHHHHHHhcCcHHHHHHHhc
Q 004225 535 DNDVLRYACEALSCLSD--GTNDKIQAVIEADVCPRLVKLLL 574 (767)
Q Consensus 535 ~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~~~~L~~lL~ 574 (767)
.+.+|+.-+..++.... .+..... +. ..++|.+.+.++
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~-~~-~~~~~~L~~~~~ 113 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLK-FA-EPFLPKLLQSLK 113 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHH-HH-HHHHHHHHHHHH
Confidence 88899988888888765 1111222 21 236677777664
No 394
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=50.24 E-value=92 Score=25.33 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHH
Q 004225 631 AGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGL 699 (767)
Q Consensus 631 ~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL 699 (767)
...+..|++....+....+.++...+..++.. +.....+.+-|+++.|-++-..-++..+..+-..+
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~--~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS--PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC--cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35677888888888888999999999998884 67777788889999977777666776665554444
No 395
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=49.96 E-value=2.7e+02 Score=31.12 Aligned_cols=144 Identities=14% Similarity=0.060 Sum_probs=73.3
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhc-CCChH-H----HHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHh
Q 004225 365 LAGVWSDDSGLQLEATTWFRKLL-LPPSE-K----VIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVID 436 (767)
Q Consensus 365 ~~~l~s~~~~~~~~a~~~L~~l~-~~~~~-~----i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~ 436 (767)
+..+..-.++++..|+-.|+-+. ..... . .....++..++..+. .+ +..+..++++|.|+.. ..++.+..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~-~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-AD-PANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cc-hhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34444556777888888888777 22211 1 112235666666666 34 6788899999999988 33333332
Q ss_pred C--CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc----cCCChHHHHHHHHHHHhhcC
Q 004225 437 G--GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN----KHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 437 ~--~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~~~~~L~~l~~ 510 (767)
. ..+..+++.=..++..++...+...-|++.- ..+...+.+..+.+...+. ..++.+...-.+.|+++++.
T Consensus 628 ~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 628 RLESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 1 1222222222225556655544444454411 1111112333344443332 22333444456667777776
Q ss_pred CCC
Q 004225 511 GKP 513 (767)
Q Consensus 511 ~~~ 513 (767)
.++
T Consensus 705 ~~~ 707 (745)
T KOG0301|consen 705 VDA 707 (745)
T ss_pred ccH
Confidence 653
No 396
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.41 E-value=4.3e+02 Score=30.67 Aligned_cols=212 Identities=11% Similarity=0.055 Sum_probs=119.6
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHH-hCCCh
Q 004225 362 PGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVI-DGGAV 440 (767)
Q Consensus 362 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~l 440 (767)
-.+=++++++....+.++...+-++.......+.-....-.|.+.....+ ...|...+++...--. +.+.+. -...+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn-~llRf~V~rv~~q~g~-hln~v~n~aE~l 104 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGN-NLLRFAVLRVDQQSGK-HLNKVLNGAEFL 104 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCc-HHHHHHHHHHHhhccc-cchhhhhhhhhh
Confidence 34456788888888888888888887222222333334455667777777 6788877776663222 222222 12233
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccch
Q 004225 441 PIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQV 520 (767)
Q Consensus 441 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 520 (767)
..+....++.|+.-|..++.+++.++.--|+. +.+..++..-..+.+.--.+.++.+..+++..... ..
T Consensus 105 rri~~V~hsnDp~aRAllL~ilg~~s~lipEf-------n~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~----FA 173 (970)
T KOG1988|consen 105 RRIFYVDHSNDPVARALLLRILGQLSALIPEF-------NQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKD----FA 173 (970)
T ss_pred heeEEeecCCCHHHHHHHHHHHHHhhhhcccc-------cchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhh----hH
Confidence 44444556789999999999999888654443 34455554432455555567777777777755422 12
Q ss_pred hchHHHHHHHhcCCC--HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 521 RPALPALAQLVHSND--NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 521 ~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
.++.-.+-.++...+ +.++..++.++..+........+ +....++++..... ++....-+.++.++
T Consensus 174 ~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A~r------a~~l~m~lv~~tps-~d~~v~fL~stT~L 241 (970)
T KOG1988|consen 174 CSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGASR------AFGLCMSLVSGTPS-IDRVVAFLYSTTNL 241 (970)
T ss_pred HHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhhHH------HHHHHHHHhcCCCc-ccceeeehhhhHHH
Confidence 222333334444333 56677888888888765432222 33445555544332 13333344444444
No 397
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=46.08 E-value=1.5e+02 Score=34.72 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=90.7
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHH-
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLV- 476 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~- 476 (767)
+...+...+.+++ +..-.....++.+++. +.........-++.-.......-..+......+|+.++..+++..+.+
T Consensus 442 lW~~l~~~~~~~~-~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 442 LWKALLKSLDSDN-PDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHHhhcCCC-hHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4445556666666 7777777777777766 111110011122222222222234566778889999998777655444
Q ss_pred HhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 477 LSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 477 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
.+.++...++.++ -++++++.+.|...+....... +-...+-.++++.-........+.+..+...
T Consensus 521 ~d~~~~~~i~s~l-fsp~~~l~qaA~~llk~~~d~~---------~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 521 SDPDAAQAIWSLL-FSPDDDLYQAAQDLLKQAFDVD---------GRLEAIQALLQSNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred cCcchhhHHHhhe-eCCChHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 4567899999999 8999999999999999988543 3344555556555555666777777777644
No 398
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=45.82 E-value=1.3e+02 Score=25.72 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=58.9
Q ss_pred CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhh---cCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccH
Q 004225 645 EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLL---LYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNH 721 (767)
Q Consensus 645 ~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~ 721 (767)
+.........-|+..+.. . ..... ++..|..-+ +..+..+..+|+..|..++..|...
T Consensus 16 ~~gp~~~~l~eIa~~t~~-~-~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~------------ 76 (125)
T PF01417_consen 16 PWGPPGKLLAEIAQLTYN-S-KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER------------ 76 (125)
T ss_dssp SSS--HHHHHHHHHHTTS-C-HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH------------
T ss_pred CCCcCHHHHHHHHHHHhc-c-ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH------------
Confidence 334455555566666664 2 44444 466677776 4567889999999999999986543
Q ss_pred HHHHHH-hhchHHHHHHHhc--C----CChHHHHHHHHHHHHhcCCC
Q 004225 722 YARLVE-AAEGFKKIEDLKR--H----DSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 722 ~~~~l~-~~g~~~~l~~l~~--~----~~~~v~~~a~~~l~~~~~~~ 761 (767)
+...++ ....+..+.++.. . ....|+++|.++++-+.+.+
T Consensus 77 ~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~ 123 (125)
T PF01417_consen 77 FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDE 123 (125)
T ss_dssp HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcc
Confidence 333442 3344444444433 1 12359999999998776643
No 399
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.08 E-value=3.6e+02 Score=32.28 Aligned_cols=129 Identities=9% Similarity=0.027 Sum_probs=78.9
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhh
Q 004225 605 GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLL 684 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll 684 (767)
++|..++..|+-.....|+ .+++...+..+--.|.+.+..||..+..+|-.+.........-.+.-..+=..++++.
T Consensus 302 ~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa 378 (1048)
T KOG2011|consen 302 DIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA 378 (1048)
T ss_pred HHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 5555566666655554443 3556666777777888899999999999999998762222222222344555677776
Q ss_pred -cCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHH
Q 004225 685 -LYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILE 755 (767)
Q Consensus 685 -~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 755 (767)
.+.+..|+..++..+.-....+ .| .-.-+..+-.++.+.++++...|...+.
T Consensus 379 drd~~~~Vrav~L~~~~~~~~~g------------------~L-~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 379 DRDRNVSVRAVGLVLCLLLSSSG------------------LL-SDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred hhhcchhHHHHHHHHHHHHhccc------------------cc-ChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 4456666666555444433211 11 1122455667778888888777776654
No 400
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=44.72 E-value=2.2e+02 Score=25.75 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=58.6
Q ss_pred hHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHH-hC-CChHHHHH-hhCCCC--HHHHHHHHHHHHHH
Q 004225 391 SEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVI-DG-GAVPIFVK-LLSSPS--DDVREKAVWALGNI 465 (767)
Q Consensus 391 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~-~~l~~L~~-lL~~~~--~~v~~~a~~~L~nl 465 (767)
...+++..+.+.+.+.+.+++ +.+-..+++++..+....+..+. +. -.++.++. ++++++ ..-|..++.++..+
T Consensus 66 l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 66 LINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 445567788899999888888 88888999999998883332222 11 13344444 666543 46788899999999
Q ss_pred hcCCchhHHHHHh
Q 004225 466 ARSSPRDRDLVLS 478 (767)
Q Consensus 466 ~~~~~~~~~~~~~ 478 (767)
+.+..-..+...+
T Consensus 145 ~~~p~~l~~lf~N 157 (168)
T PF12783_consen 145 CKDPQFLVDLFVN 157 (168)
T ss_pred HhChhHHHHHHHH
Confidence 9765444444443
No 401
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=44.28 E-value=2.1e+02 Score=26.46 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=51.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
-.+|.+.+-|...+...+..|...+..+.......+-.-+=...|.++-+.| .+.++++...++.+|..+....
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL-~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRAL-NTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhh
Confidence 3577888878777766777777777777654222221112234667777777 8899999999999999996554
No 402
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=44.04 E-value=5.4e+02 Score=30.28 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC--CHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHH
Q 004225 646 FFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA--DPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYA 723 (767)
Q Consensus 646 ~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~ 723 (767)
...|-..+..++.+....+....+.+...+++..+.+++..- +.-+-.++-.+|............ +.........
T Consensus 336 G~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~~~~~~~--~~s~~~~~v~ 413 (838)
T KOG2073|consen 336 GFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSDETNNDS--NISADNEIVD 413 (838)
T ss_pred chHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhccccccc--cCCCchHHHH
Confidence 356777777888887776777777888888887777777642 223444455555544442222111 1111334456
Q ss_pred HHHHhhchHHHHH
Q 004225 724 RLVEAAEGFKKIE 736 (767)
Q Consensus 724 ~~l~~~g~~~~l~ 736 (767)
+.+++.+....+.
T Consensus 414 ~~l~~c~l~~~~l 426 (838)
T KOG2073|consen 414 HLLQDCQLSDNIL 426 (838)
T ss_pred HHHHHhhhhhhhh
Confidence 6676776666554
No 403
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=43.75 E-value=3.4e+02 Score=26.91 Aligned_cols=169 Identities=16% Similarity=0.138 Sum_probs=94.0
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCC----------hHHHHhcCchHHHHhhccCCC---CHHHHHHHHHHHHHHH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPP----------SEKVIQSGVVARFVEFLTRED---NPQLQLEAARALTNIA 427 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~----------~~~i~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~ 427 (767)
-+-+++++.|.. ....++..|.+++.-+ +-.+.-.+.+|.++.-+.+++ .......++..|..++
T Consensus 66 q~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 66 QPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 344566676643 4556677777777111 111222345666666666655 1133445667777776
Q ss_pred h-hhhHHHHhCCChHHHHH-hhCC---CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHH
Q 004225 428 S-ENTNVVIDGGAVPIFVK-LLSS---PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNAT 502 (767)
Q Consensus 428 ~-~~~~~~~~~~~l~~L~~-lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~ 502 (767)
. ... +.+..+.. +.+. +..+-..+++..|..-.. |+. +...+..++.++ ..+.+.++..++
T Consensus 144 ~~~~~------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL-~n~~~w~~~~~L 209 (262)
T PF14225_consen 144 EAQGL------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLL-ENGPPWLRRKTL 209 (262)
T ss_pred HhCCC------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHH-hCCcHHHHHHHH
Confidence 5 111 22233333 3333 223344444444443321 222 223567788999 788889999999
Q ss_pred HHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHH
Q 004225 503 KTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEAL 546 (767)
Q Consensus 503 ~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 546 (767)
..|..+....+.... ...+.+..+.++++.+-..-.-.++..+
T Consensus 210 ~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 210 QILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWMEALEVLDEI 252 (262)
T ss_pred HHHHHHhccccCCCC-cchHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 999998877644333 6667888999999776543333333333
No 404
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=42.74 E-value=1.4e+02 Score=23.60 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=48.0
Q ss_pred HHcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHH---HHHHhcCCChHHH
Q 004225 672 VRKGCIKPLCDLLL-YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKK---IEDLKRHDSNGIC 747 (767)
Q Consensus 672 ~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~---l~~l~~~~~~~v~ 747 (767)
.+..++.|+..++. ..+.++++..+.++..++.... ..+ ..|.-.. +..-..+.++++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----------------~~i-~SGW~~if~il~~aa~~~~e~lv 76 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----------------ENI-KSGWKVIFSILRAAAKDNDESLV 76 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----------------HHH-HhccHHHHHHHHHHHhCCCccHH
Confidence 45568889999865 4688999999999999997432 233 4454333 3333566788888
Q ss_pred HHHHHHHHH
Q 004225 748 EKAVKILEI 756 (767)
Q Consensus 748 ~~a~~~l~~ 756 (767)
..|-++++.
T Consensus 77 ~~af~~~~~ 85 (86)
T PF09324_consen 77 RLAFQIVQL 85 (86)
T ss_pred HHHHHHHhh
Confidence 888888764
No 405
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=42.69 E-value=4.3e+02 Score=27.80 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=52.2
Q ss_pred HHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHHhc
Q 004225 392 EKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPS-DDVREKAVWALGNIAR 467 (767)
Q Consensus 392 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~L~nl~~ 467 (767)
...+...++-.|+.+.+++| |..|...-.+|.++.. ..+. .+..+.=..+.+++-... ..=....+.++|.+..
T Consensus 171 K~yid~~FvlkLLdLFdSED-pRERe~LKT~LhrIygKfl~~r~-firk~iNNif~~FIyEte~hnGIaELLEIlgSiIn 248 (457)
T KOG2085|consen 171 KKYIDQKFVLKLLDLFDSED-PREREFLKTILHRIYGKFLVHRP-FIRKSINNIFLRFIYETERHNGIAELLEILGSIIN 248 (457)
T ss_pred HHHhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhHH-HHHHhhcchhhhhcccccccCCHHHHHHHHHHhcC
Confidence 44566778899999999999 9999988888988887 3333 333344456666665422 2223556778888775
Q ss_pred CCc
Q 004225 468 SSP 470 (767)
Q Consensus 468 ~~~ 470 (767)
+..
T Consensus 249 gfA 251 (457)
T KOG2085|consen 249 GFA 251 (457)
T ss_pred ccc
Confidence 543
No 406
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=42.45 E-value=2.8e+02 Score=30.59 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCC-CCHHHHHHHHHHH---HHHHh-------hhhHHHHhCCC
Q 004225 371 DDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRE-DNPQLQLEAARAL---TNIAS-------ENTNVVIDGGA 439 (767)
Q Consensus 371 ~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L---~~l~~-------~~~~~~~~~~~ 439 (767)
.++..|..-+..|.+-. .-...-...+......+.++ .+..++..++..+ ..... .....++..++
T Consensus 295 a~~~lq~kIL~~L~kS~---~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g 371 (501)
T PF13001_consen 295 ASPRLQEKILSLLSKSV---IAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQG 371 (501)
T ss_pred CCHHHHHHHHHHHHHhH---HHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcC
Confidence 45667777777777632 00001112233333344444 1256666666655 43333 22333445566
Q ss_pred hHHHHH----hhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 440 VPIFVK----LLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 440 l~~L~~----lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
.|.+-. --...+...|..+-.+||.++...+..- .-+.+.+..+..-+ ..++++++..+-.||..++..-
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHHH
Confidence 666510 1123568899999999999998877542 12345788888888 8889999999999998887654
No 407
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=41.61 E-value=1.8e+02 Score=30.15 Aligned_cols=112 Identities=11% Similarity=0.088 Sum_probs=66.0
Q ss_pred CHHHHHHHHcc-----CC-ChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc----------CCCHHHHHHHHH
Q 004225 481 ALIPLLAQLNK-----HA-KPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH----------SNDNDVLRYACE 544 (767)
Q Consensus 481 ~i~~L~~ll~~-----~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~----------~~~~~v~~~a~~ 544 (767)
.+|.++.++.+ .. +.......+..+..|..+..-.-......++|.++..+- .+...+|..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 45666666631 12 566677777777777777644444455567888887662 233789999999
Q ss_pred HHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 545 ALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 545 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
++..+++........+ ...+...+.+.+.++..+.....=|+.+|..+
T Consensus 291 ll~~i~~~f~~~y~~l-~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNTL-QPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCcH-HHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999985533222211 22355567777766654223344445444444
No 408
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=39.85 E-value=1.2e+02 Score=23.20 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=31.1
Q ss_pred HHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 722 YARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 722 ~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
-.+.+...+.-..+..+-.|++++|...|..++..+
T Consensus 34 t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 34 TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 366788888888899999999999999999998765
No 409
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=39.63 E-value=3.8e+02 Score=26.29 Aligned_cols=82 Identities=22% Similarity=0.281 Sum_probs=52.7
Q ss_pred hcCCHHHHHHHHccCCCh-------HHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCC--HHHHHHHHHHHHh
Q 004225 478 SEKALIPLLAQLNKHAKP-------SMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSND--NDVLRYACEALSC 548 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~-------~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~ 548 (767)
+..+.++++++++.+++. -+-+....++..++.+ -++.|..++.+++ .-+|.+|+.++..
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G-----------~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDG-----------DIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCC-----------CHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 344789999999533321 1333344444455444 5778888888665 7789999999999
Q ss_pred hccCChhHHHHHHhcCcHHHHHHH
Q 004225 549 LSDGTNDKIQAVIEADVCPRLVKL 572 (767)
Q Consensus 549 l~~~~~~~~~~~~~~~~~~~L~~l 572 (767)
++..++.....+++ .+..++..
T Consensus 140 l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 140 LVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHHcCCCCHHHHHH--HHHHHHHH
Confidence 99887766665543 34444433
No 410
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=39.56 E-value=5.6e+02 Score=34.19 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=60.2
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHH----H--hCCChHHHHH-hhCCCCHHHHHHHHHHHHHHhcCCchhH
Q 004225 403 FVEFLTREDNPQLQLEAARALTNIAS--ENTNVV----I--DGGAVPIFVK-LLSSPSDDVREKAVWALGNIARSSPRDR 473 (767)
Q Consensus 403 L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~----~--~~~~l~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 473 (767)
+-..+..++ ++++..|+..+..+.. ...... . ....+..+.. .+.++++.++......+. ...-
T Consensus 486 ~~~~~~~~~-~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~ 558 (2341)
T KOG0891|consen 486 VDSYLEADD-SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFD 558 (2341)
T ss_pred HHHHHhccc-HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchh
Confidence 334455556 8899988777777666 220000 0 1112222222 223467776665544444 1122
Q ss_pred HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC
Q 004225 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP 513 (767)
Q Consensus 474 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 513 (767)
....+.+.+..+...+ .++....+..+...+++++..+|
T Consensus 559 ~~laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~ 597 (2341)
T KOG0891|consen 559 AQLAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNP 597 (2341)
T ss_pred hhhcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccH
Confidence 2244555666677777 78888899999999999998775
No 411
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=39.31 E-value=1.4e+02 Score=30.89 Aligned_cols=72 Identities=8% Similarity=0.070 Sum_probs=58.8
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHH
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL-YADPEIVTICLKGLENILK 704 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~ 704 (767)
.+..+.+-+.+.++.|.-.|...+..++..+.......+...++..-|..++. ...+.|+++....+.....
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 46677888899999999999999999988777777777788888889999998 5677887777776666665
No 412
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=39.03 E-value=6.1e+02 Score=28.58 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=40.2
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHh-h------hhH-HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcC
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIAS-E------NTN-VVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARS 468 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~------~~~-~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~ 468 (767)
+-++.+++-+++++ ++++..|...++...+ . ..+ .-+=..-...|..+-++ .+++.+...+.+|.-++..
T Consensus 48 ~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt 126 (878)
T KOG2005|consen 48 GDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMT 126 (878)
T ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHhee
Confidence 34566666666666 6666666666666555 0 111 00001123344444444 5667788888888888855
Q ss_pred Cch
Q 004225 469 SPR 471 (767)
Q Consensus 469 ~~~ 471 (767)
..+
T Consensus 127 ~se 129 (878)
T KOG2005|consen 127 MSE 129 (878)
T ss_pred ecc
Confidence 443
No 413
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=38.89 E-value=2.4e+02 Score=32.11 Aligned_cols=115 Identities=12% Similarity=0.174 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHc----------CChHHHHhhhcCC-CHHHHHHHHHHHHHH
Q 004225 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRK----------GCIKPLCDLLLYA-DPEIVTICLKGLENI 702 (767)
Q Consensus 634 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~----------~~i~~L~~ll~~~-~~~v~~~al~aL~~l 702 (767)
+-.+...++...+.+...++..++.++..+.....+.++.+ .-+.++++-+... +...+..+...|..+
T Consensus 236 lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~veRF~piv~gl~~~e~~~l~vacmq~INal 315 (1102)
T KOG1924|consen 236 LLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKPVERFRPIVEGLDFLEKQQLQVACMQFINAL 315 (1102)
T ss_pred HHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcchhhhhhHHHHHhccchHHHHHHHHHHHHHh
Confidence 45566666666777888888888888765443333333221 3466777777765 445555555544444
Q ss_pred HHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHH
Q 004225 703 LKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEI 756 (767)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 756 (767)
....++.. .--+++..+...|.-+.|.++....|. ..+.+..+...
T Consensus 316 ~t~p~dld-------fRlhlR~E~mr~gL~~~l~~l~~i~n~-~ldvqlkvfdE 361 (1102)
T KOG1924|consen 316 VTSPSDLD-------FRLHLRSEFMRDGLHKYLPDLTEINND-ILDVQLKVFDE 361 (1102)
T ss_pred cCCHHHhh-------HHHHHHHHHHHHhHHHHHHHhhhhccH-HHHHHHHHHhh
Confidence 44332221 223456667788988888888776444 33355555543
No 414
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=37.53 E-value=4.2e+02 Score=26.28 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=88.1
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcc
Q 004225 521 RPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFL 600 (767)
Q Consensus 521 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~ 600 (767)
-+.+.-|...+...|+..+ .+.++++..- ++..+.+|.|...=. +. .+...+++.+.+++.--+..
T Consensus 12 l~~LkdL~r~lr~dd~~~~-~v~r~lg~~~---------iv~~DLiPiL~~~~~--~~--~l~~~~l~LLV~LT~P~~~~ 77 (266)
T PF04821_consen 12 LECLKDLKRFLRRDDEDQR-DVRRQLGEWN---------IVQKDLIPILISYKD--DD--KLFLACLRLLVNLTWPIELL 77 (266)
T ss_pred HHHHHHHHHHHHHhCcchH-HHHHHHHHhc---------hhhhhHHHHHHhccC--ch--HHHHHHHHHHHHhCCCHHHh
Confidence 3456666666766655444 3333333211 333445554443322 34 88899999999998421110
Q ss_pred eeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhc----C-------CchhHHHHHHHHHHhhcCCC-----
Q 004225 601 TQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQN----A-------EFFTKKEAARAISNAISGGT----- 664 (767)
Q Consensus 601 ~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~----~-------~~~v~~~a~~~L~nl~~~~~----- 664 (767)
.....-....-..+..+...-.....++.+.+++..++..+.. + +..+.+.+...+.|+..-.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~ 157 (266)
T PF04821_consen 78 VESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSAS 157 (266)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 0000000000011111111112233344455555655555422 1 23567777788888875411
Q ss_pred ----------HHHHHHHHHcCChHHHHhhhcCC-CHHHHHHHHHHHHHHHHhh
Q 004225 665 ----------HEQIKYLVRKGCIKPLCDLLLYA-DPEIVTICLKGLENILKVG 706 (767)
Q Consensus 665 ----------~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~aL~~l~~~~ 706 (767)
...+..+.+.|+.+.|+.+..+. ..+-....+.+++.+.+..
T Consensus 158 ~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 158 KRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred cccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 12244566789999999998875 3344446777777777653
No 415
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=37.31 E-value=23 Score=19.82 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=7.5
Q ss_pred CCccceEeecCCC
Q 004225 307 FPSLERLVVDDCP 319 (767)
Q Consensus 307 ~~~L~~L~i~~c~ 319 (767)
+++|++|++++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3677888887775
No 416
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=36.76 E-value=5.1e+02 Score=27.04 Aligned_cols=131 Identities=16% Similarity=0.146 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHH
Q 004225 450 PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQ 529 (767)
Q Consensus 450 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ 529 (767)
....-+.-|+..+.+.....|...+. ++.+-+.+. ++.+..+|+.|+.-|-.+|.++ ....+.+.|++
T Consensus 36 ~~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~q 103 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQ 103 (460)
T ss_pred cchHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHH
Confidence 33445566778888888777765443 456666777 7888889999998888888773 23344455555
Q ss_pred Hhc------------CCCHHHHHHHHHHHHh-hccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 530 LVH------------SNDNDVLRYACEALSC-LSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 530 ll~------------~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
+++ -.|..+++.++..+.. +..-.++....-++..++..+-+.|.+.+. +--...+..|+++.
T Consensus 104 LLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtg--eef~lfm~~L~~lk 179 (460)
T KOG2213|consen 104 LLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTG--EEFTLFMDILASLK 179 (460)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHhhh
Confidence 543 2356677766665542 223333333333333455555555555554 33333344444443
No 417
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=36.24 E-value=24 Score=20.15 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=12.9
Q ss_pred CCccceEeecCCCCccccccc
Q 004225 307 FPSLERLVVDDCPDMKIFSEG 327 (767)
Q Consensus 307 ~~~L~~L~i~~c~~l~~~~~~ 327 (767)
+++|++|++.++ .++.+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 356777777666 56666554
No 418
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=36.24 E-value=24 Score=20.15 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=12.9
Q ss_pred CCccceEeecCCCCccccccc
Q 004225 307 FPSLERLVVDDCPDMKIFSEG 327 (767)
Q Consensus 307 ~~~L~~L~i~~c~~l~~~~~~ 327 (767)
+++|++|++.++ .++.+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 356777777666 56666554
No 419
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=36.11 E-value=1.5e+02 Score=24.75 Aligned_cols=70 Identities=4% Similarity=-0.027 Sum_probs=52.3
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhh------cCCCHHHHHHHHHHHHHH
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLL------LYADPEIVTICLKGLENI 702 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll------~~~~~~v~~~al~aL~~l 702 (767)
++..+..-+.+.++.++..|...|-.++..+.......+....++..++... ...+..|+..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4566777778889999999999999999988888877777766666555431 124678888888777654
No 420
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=35.88 E-value=1.9e+02 Score=31.63 Aligned_cols=79 Identities=25% Similarity=0.250 Sum_probs=50.5
Q ss_pred HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCC-------------chhHHHHHhcCCHHHHHHHHccCCChHHHH
Q 004225 434 VIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSS-------------PRDRDLVLSEKALIPLLAQLNKHAKPSMLR 499 (767)
Q Consensus 434 ~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-------------~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 499 (767)
+.+.++++.|+.+|.. .+++++..|+..|..+..-. ....+.+.....|..|++.+-.........
T Consensus 58 L~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lv 137 (475)
T PF04499_consen 58 LAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLV 137 (475)
T ss_pred HHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHH
Confidence 3467888999998864 56778888888877765311 123344555567777777764323466666
Q ss_pred HHHHHHHhhcCCC
Q 004225 500 NATKTLSRFCQGK 512 (767)
Q Consensus 500 ~~~~~L~~l~~~~ 512 (767)
+++.++-.+.+..
T Consensus 138 n~v~IlieLIRkn 150 (475)
T PF04499_consen 138 NGVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHHHhc
Confidence 7777776665443
No 421
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=34.94 E-value=55 Score=19.06 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc
Q 004225 497 MLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH 532 (767)
Q Consensus 497 ~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~ 532 (767)
+|..++++|+++... .+++.|++.++
T Consensus 1 VR~~Aa~aLg~igd~----------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP----------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHhc
Confidence 578889999988763 57777777654
No 422
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=34.93 E-value=80 Score=26.10 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=33.8
Q ss_pred HHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccch
Q 004225 540 RYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTP 585 (767)
Q Consensus 540 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~ 585 (767)
...+..+..++..+ +....+++.|+++.|+.+|.|.+. +|...
T Consensus 64 d~~Ik~l~~La~~P-~LYp~lv~l~~v~sL~~LL~HeN~--DIai~ 106 (108)
T PF08216_consen 64 DEEIKKLSVLATAP-ELYPELVELGAVPSLLGLLSHENT--DIAID 106 (108)
T ss_pred HHHHHHHHHccCCh-hHHHHHHHcCCHHHHHHHHCCCCc--ceehc
Confidence 45666677777765 667778899999999999999998 66544
No 423
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.58 E-value=1.4e+02 Score=32.14 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=54.8
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC--CChHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH--DSNGICEKAVKI 753 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~--~~~~v~~~a~~~ 753 (767)
++..|.+-+.+.++.++..|+..|..+++..+.. +...+.+.++++.+..+... .+..|++++..+
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~------------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~L 106 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS------------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILEL 106 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHH
Confidence 5667777888888899999999999999865542 34456677777777766544 577899999999
Q ss_pred HHHhcC
Q 004225 754 LEIYWS 759 (767)
Q Consensus 754 l~~~~~ 759 (767)
|+.+..
T Consensus 107 I~~W~~ 112 (470)
T KOG1087|consen 107 IDTWQQ 112 (470)
T ss_pred HHHHHH
Confidence 998743
No 424
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=34.24 E-value=7.8e+02 Score=28.36 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=76.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
.|..|..+-.++=+.++.+++.++.++....|+.-.. .+..+++-+ -+++..+...|.+.|.+|....|+.+.+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 4556666666677899999999999999988886443 457788888 7888888999999999999998887777
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLS 550 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 550 (767)
+...+...+.+ .+-+.....+|+..|..+.
T Consensus 379 vi~EIer~~FR--pn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 VIDEIERLAFR--PNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hHHHHHHHHcc--cCccccceeehhhhhhhhH
Confidence 66554433321 2334556666777776665
No 425
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=34.10 E-value=61 Score=28.52 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=53.2
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCChH--HHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSE--KVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGG 438 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~--~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 438 (767)
...++++|+.+........+..|.+-..+..+ ..++.+++..+++-=.... .--+..|...|+.+.. .-
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~-~Is~~~Av~LLGtM~G--------GY 94 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSP-LISPAEAVELLGTMLG--------GY 94 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BT-TB-HHHHHHHHTTS-S--------ST
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCC-CcCHHHHHHHHhhccC--------CC
Confidence 44567777765555444455555554433322 3445555555554322222 2345667777776653 12
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcC
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARS 468 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 468 (767)
-++.|+.+|.+.|.++...|+.+|.+..--
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 478899999999999999999999986643
No 426
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=33.80 E-value=6.1 Score=34.07 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=25.9
Q ss_pred CCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecC
Q 004225 224 QNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVD 291 (767)
Q Consensus 224 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 291 (767)
..|+..+|++. .+++.+. .+...+|.+++|++.+.. +.++|.+.-. +|.|+.|.+..
T Consensus 53 ~el~~i~ls~N-~fk~fp~-kft~kf~t~t~lNl~~ne-isdvPeE~Aa--------m~aLr~lNl~~ 109 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKKFPK-KFTIKFPTATTLNLANNE-ISDVPEELAA--------MPALRSLNLRF 109 (177)
T ss_pred ceEEEEecccc-hhhhCCH-HHhhccchhhhhhcchhh-hhhchHHHhh--------hHHhhhccccc
Confidence 34555555543 2333322 223345555555555432 4555444222 55555555554
No 427
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=33.22 E-value=1.8e+02 Score=22.23 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=30.9
Q ss_pred HHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 723 ARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 723 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
.+.+...+.-..+..+-.|++++++..|..++..+
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 66788888888999999999999999999998765
No 428
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.78 E-value=5.4e+02 Score=30.95 Aligned_cols=140 Identities=11% Similarity=0.043 Sum_probs=90.0
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHH-HHHhcCCH
Q 004225 404 VEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRD-LVLSEKAL 482 (767)
Q Consensus 404 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~-~~~~~g~i 482 (767)
++-.++-. +++|..++..|+.....+...+++...+.++=..|.+.+..||..++.+|-.+...+...-. ...-...=
T Consensus 293 VHRYRDV~-~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 293 VHRYRDVD-PDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK 371 (1048)
T ss_pred eeecccCc-hHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 34445556 89999999999888887788888888889998899999999999999999999976332110 00011122
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 004225 483 IPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCL 549 (767)
Q Consensus 483 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 549 (767)
..++++.-.+-+..|+...+..+....... .....-+-.+..++-+.+..++.+|...+..-
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 334444424455666666555544433221 12223344566777777777877777766543
No 429
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=32.38 E-value=45 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=21.7
Q ss_pred hhchHHHHHHHhcCCChHHHHHHHHHH
Q 004225 728 AAEGFKKIEDLKRHDSNGICEKAVKIL 754 (767)
Q Consensus 728 ~~g~~~~l~~l~~~~~~~v~~~a~~~l 754 (767)
.....+.+...+.++++.||+.|.+++
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 345567778889999999999998764
No 430
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=32.14 E-value=6.1e+02 Score=26.53 Aligned_cols=223 Identities=13% Similarity=0.088 Sum_probs=100.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCCh--------HHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh----
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPS--------EKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---- 428 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~--------~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---- 428 (767)
+..-+.....++..++.+|.+-|-.++.... ......+-+..|+.-....+ ..+++.+...++.=..
T Consensus 63 ~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D-~~irek~l~fi~tKl~~l~~ 141 (460)
T KOG2213|consen 63 IDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLTGLFGQIEVGD-EQIREKVLKFIRTKLITLKG 141 (460)
T ss_pred HHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHhhcccH
Confidence 3344555567888999999999998882211 11112222222222222233 5677766655543222
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-chhHHHHHhcC-CHHHHHHH--HccCCChHHHHH----
Q 004225 429 ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSS-PRDRDLVLSEK-ALIPLLAQ--LNKHAKPSMLRN---- 500 (767)
Q Consensus 429 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g-~i~~L~~l--l~~~~~~~~~~~---- 500 (767)
+....-++.-++.-+-..|.+-+.+--...+..|+++.... ......+.+.- ....+-++ + ...|++...-
T Consensus 142 e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf-~~sD~d~VdRfisC 220 (460)
T KOG2213|consen 142 EVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAF-NVSDADYVDRFISC 220 (460)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcc-cCCChHHHHHHHHH
Confidence 33333344445555556666644443344555666665332 11111111100 00111111 2 2234444333
Q ss_pred HHHHHHhhcCCCCCCCccc--hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcC---
Q 004225 501 ATKTLSRFCQGKPEPPFDQ--VRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLH--- 575 (767)
Q Consensus 501 ~~~~L~~l~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--- 575 (767)
...|+--++++.|..++.. ....+|. .......+.+.+.+.+++.++.+..... . ...+|.++++|..
T Consensus 221 l~~AvPfFargapSskf~~y~n~~~ip~---~fdkl~e~rkL~lLK~lAEMss~ttaq~--a--~q~Lpsi~elLk~yMp 293 (460)
T KOG2213|consen 221 LLMAVPFFARGAPSSKFVEYLNKHIIPH---HFDKLTEERKLDLLKALAEMSSYTTAQA--A--RQMLPSIVELLKEYMP 293 (460)
T ss_pred HHHhhhhhhcCCchhHHHHHHHhhhccc---ccccchHHHHHHHHHHHHHhCccchHHH--H--HHHHHHHHHHHHHhcc
Confidence 3333344555544333221 1223332 1112226788888889988887653221 1 1245555555543
Q ss_pred -CCCCCcccchHHHHHhh
Q 004225 576 -PLPFPFGLTPPLWTVRY 592 (767)
Q Consensus 576 -~~~~~~v~~~a~~~L~~ 592 (767)
.+.+++.+..-+.++.+
T Consensus 294 a~kt~ee~~fsyvEClly 311 (460)
T KOG2213|consen 294 APKTGEEMQFSYVECLLY 311 (460)
T ss_pred cCCccHHHHHHHHHHHHH
Confidence 34333444444444433
No 431
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=31.97 E-value=4.5e+02 Score=28.34 Aligned_cols=114 Identities=11% Similarity=0.157 Sum_probs=60.7
Q ss_pred HHHHHHHHcc---CCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCC-CHHHHHHHHHHHHhhcc----CC
Q 004225 482 LIPLLAQLNK---HAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSN-DNDVLRYACEALSCLSD----GT 553 (767)
Q Consensus 482 i~~L~~ll~~---~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~----~~ 553 (767)
+..|...+.. .+++.+.+....++..+-..-...........+..+....+++ ++..-+....+++.+.+ .+
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~ 107 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEAD 107 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCC
Confidence 4455555532 3455566666666555443321111122223333333333333 46666666666555543 23
Q ss_pred hhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 554 NDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 554 ~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
++.... .+..++|.+...|+.+-. +..-.++.+++.+....+
T Consensus 108 ~~~v~~-~E~~L~P~f~~ILq~dV~--EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 108 PEAVSQ-FEEALFPPFQEILQQDVQ--EFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HH---H-HHHHHHHHHHHHHHTT-T--TTHHHHHHHHHHHHHHSS
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC
Confidence 332332 344689999999999887 889999999998885544
No 432
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.41 E-value=7.7e+02 Score=27.14 Aligned_cols=140 Identities=10% Similarity=0.081 Sum_probs=84.9
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHcc-------CCChHHHHHHHHHHHhhcCCCCCC
Q 004225 443 FVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK-------HAKPSMLRNATKTLSRFCQGKPEP 515 (767)
Q Consensus 443 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-------~~~~~~~~~~~~~L~~l~~~~~~~ 515 (767)
+.+.+...|+..+..|+..|.+ + +.... .++.++.++.+ ..+.......+..++.|..+....
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T---D-sGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET---D-SGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc---C-ccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 4444445777777776666552 2 11111 34566666531 245566667777777777776555
Q ss_pred CccchhchHHHHHHHhc----------CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccch
Q 004225 516 PFDQVRPALPALAQLVH----------SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTP 585 (767)
Q Consensus 516 ~~~~~~~~i~~L~~ll~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~ 585 (767)
-.......+|.++..+- ++...+|.-|+..+..++......... ....+...+.+.+.+.......++=
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhh
Confidence 55566778888887763 234778888999999999776554443 3345777788888776442234444
Q ss_pred HHHHHhhh
Q 004225 586 PLWTVRYI 593 (767)
Q Consensus 586 a~~~L~~l 593 (767)
|+.+|.-+
T Consensus 361 ai~gL~~l 368 (576)
T KOG2549|consen 361 AIAGLSEL 368 (576)
T ss_pred HHHHHHHh
Confidence 45444444
No 433
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=30.37 E-value=5.2e+02 Score=26.20 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=59.3
Q ss_pred hcCCHHHHHHHHc-cCCChHHHHHHHHHHHhhcCCCCC-C--CccchhchHHHHHHHhcCC---CHHHHHHHHHHHHhhc
Q 004225 478 SEKALIPLLAQLN-KHAKPSMLRNATKTLSRFCQGKPE-P--PFDQVRPALPALAQLVHSN---DNDVLRYACEALSCLS 550 (767)
Q Consensus 478 ~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~-~--~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~ 550 (767)
+.|.+..+++.+. ...+...+-..+.++..+.++.+. . ......|.++.++.-+-++ +.++.......|+.+.
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3467777777775 334666777888889999888743 2 3455678999999777644 3578888999999999
Q ss_pred cCChhHHHH
Q 004225 551 DGTNDKIQA 559 (767)
Q Consensus 551 ~~~~~~~~~ 559 (767)
..+......
T Consensus 173 K~n~~~f~~ 181 (303)
T PF12463_consen 173 KFNRDAFQR 181 (303)
T ss_pred CCCHHHHHH
Confidence 888655443
No 434
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.35 E-value=9.7e+02 Score=28.29 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=41.8
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcC-----Cch-hHHHHHhcCCHHHHHHHH
Q 004225 432 NVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARS-----SPR-DRDLVLSEKALIPLLAQL 489 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~-----~~~-~~~~~~~~g~i~~L~~ll 489 (767)
+.+.+...++.++.++.. .+++++..|...|+.+++. .|. ..+.+.....+..++..+
T Consensus 184 q~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~m 248 (838)
T KOG2073|consen 184 QWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIM 248 (838)
T ss_pred HHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHH
Confidence 344466789999999876 5689999999999999866 332 445555566666666665
No 435
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=30.34 E-value=2.1e+02 Score=29.65 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=56.4
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhc-CCChHHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKR-HDSNGICEKAVKIL 754 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l 754 (767)
+++.+.+-++..|+.|+..|+..+..+..+.+. .++..+....+...+..+.. +..+.|+++...++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~------------~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGK------------RFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcch------------HHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 577788889999999999999999999876543 34666667777888888887 67788988888877
Q ss_pred HHhc
Q 004225 755 EIYW 758 (767)
Q Consensus 755 ~~~~ 758 (767)
.++-
T Consensus 114 ~eWs 117 (462)
T KOG2199|consen 114 KEWS 117 (462)
T ss_pred HHHH
Confidence 7653
No 436
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=29.73 E-value=2.6e+02 Score=24.72 Aligned_cols=46 Identities=28% Similarity=0.373 Sum_probs=31.2
Q ss_pred hHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCC
Q 004225 607 AKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGG 663 (767)
Q Consensus 607 ~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~ 663 (767)
...|+..|+.+..|. =+..|+.+|++.+..+...|+.+|.+.....
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--TTC
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Confidence 456666676665542 2788999999999999999999999987653
No 437
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=29.51 E-value=49 Score=27.31 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=28.0
Q ss_pred HHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCCCCHHHHH
Q 004225 418 EAARALTNIAS--ENTNVVIDGGAVPIFVKLLSSPSDDVRE 456 (767)
Q Consensus 418 ~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 456 (767)
.++..+..++. +.-..+++.|+++.|+.+|.++|.++..
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 34556666666 5566777888899999998888776643
No 438
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=29.37 E-value=1.2e+03 Score=28.88 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=34.7
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHh----h-------C--CCCHHHHHHHHHHHHHH
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKL----L-------S--SPSDDVREKAVWALGNI 465 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~l----L-------~--~~~~~v~~~a~~~L~nl 465 (767)
+...++.+|+++. ..++..|..+|+.+-....+.+++ .+..++.- . . ....++|.+.+.++..+
T Consensus 197 LFk~ivPlLks~~-~~~r~AaVlaLG~~n~~v~~~Lle--eL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl~ll 273 (1120)
T PF14228_consen 197 LFKLIVPLLKSES-SSFRDAAVLALGSINLNVYRTLLE--ELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVLRLL 273 (1120)
T ss_pred HHHHHhhhhccCc-HHHHHHHHHhcCCCCHHHHHHHHH--HHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHHH
Confidence 4556666777776 677776666666544321222221 11111111 1 1 12356888888888777
Q ss_pred hc
Q 004225 466 AR 467 (767)
Q Consensus 466 ~~ 467 (767)
+.
T Consensus 274 Ae 275 (1120)
T PF14228_consen 274 AE 275 (1120)
T ss_pred Hh
Confidence 74
No 439
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=26.21 E-value=5.7e+02 Score=27.67 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhc----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHh---CCChHHHHH
Q 004225 373 SGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVID---GGAVPIFVK 445 (767)
Q Consensus 373 ~~~~~~a~~~L~~l~----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~l~~L~~ 445 (767)
...+..|+++|+.++ .+....+.. +.|..+|++.. ..-|..|+-++...+...+..-.. ....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 356788999999988 222333332 37889999988 778888888888888811111111 234566777
Q ss_pred hhCCC
Q 004225 446 LLSSP 450 (767)
Q Consensus 446 lL~~~ 450 (767)
.|..+
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 77743
No 440
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.56 E-value=7e+02 Score=26.21 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=78.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCCc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPF 517 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~~ 517 (767)
-+.-++.-+++.+..+|..|...+..+....+..... .-.-.++.+..++ .+.+..+|.....++-.+.... +....
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~-~~~~ll~~~~~~i-~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS-HLYALLQKLRELI-LDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH-HHHHHHHHhhhhh-cCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 3455677788899999999999888877554432221 1223556666666 6777788888777777755443 22233
Q ss_pred cchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh
Q 004225 518 DQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTN 554 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 554 (767)
....-+++.+...+.+-.++++..++..+..+...-+
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 4445566777777888899999999999998886543
No 441
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=25.11 E-value=1.2e+02 Score=17.99 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcC
Q 004225 496 SMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHS 533 (767)
Q Consensus 496 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~ 533 (767)
.+|..++++|+++... .+++.|...+++
T Consensus 2 ~vR~~aa~aLg~~~~~----------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDE----------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCH----------hHHHHHHHHhcC
Confidence 4788899999998543 366777766653
No 442
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.56 E-value=8.5e+02 Score=30.28 Aligned_cols=242 Identities=12% Similarity=0.067 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHH
Q 004225 413 PQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSS-------PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPL 485 (767)
Q Consensus 413 ~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 485 (767)
.+++.....++.++....-+..+ .| .+.+.+.+++ ...++...+-.+|.-++++.-.....-.-.+.++.+
T Consensus 856 ~evr~~sl~~l~silet~ge~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl 933 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEHLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTL 933 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchhhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHH
Confidence 56777777777777761111111 12 4444444432 234566666667766665432211111123456666
Q ss_pred HHHHccCCChHHHHHHHHHHHhhcCCCCCC-----CccchhchHHHHHHHhcCCCHHHHHHHHHHH--HhhccCChhHHH
Q 004225 486 LAQLNKHAKPSMLRNATKTLSRFCQGKPEP-----PFDQVRPALPALAQLVHSNDNDVLRYACEAL--SCLSDGTNDKIQ 558 (767)
Q Consensus 486 ~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~-----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L--~~l~~~~~~~~~ 558 (767)
..+-++..|..+--.|+..+++++..-... ........+..+.. ..+...+...++|.+ .++.+..++...
T Consensus 934 ~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~~~~~dsr~ 1011 (1610)
T KOG1848|consen 934 LVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLADLCEDSRA 1011 (1610)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHHHHHHHHHHhccchH
Confidence 666656666666666776666665432111 11111222222222 223344555555542 222222222222
Q ss_pred HHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhh-----hhccCCcce------eeh--hhhHHHHHHHhhhccCCHHHH
Q 004225 559 AVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRY-----IVKGDGFLT------QCT--GIAKEACRTISNITAGNREQI 625 (767)
Q Consensus 559 ~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~-----l~~~~~~~~------~~l--~v~~~a~~~l~nl~~~~~~~~ 625 (767)
-++.|++..+.+.+.++.. ....+|..-..+ +..+.+.+. +.+ .--+..+.+++.|+.-.+++.
T Consensus 1012 -eVRngAvqtlfri~~Shg~--~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1012 -EVRNGAVQTLFRIFNSHGS--KLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred -HHhhhHHHHHHHHHhhhcc--cCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 2345677777777776655 444433322111 112111111 100 122345667777777666666
Q ss_pred HHHHHcCC----HHHHHHHH----hcCCchhHHHHHHHHHHhhc
Q 004225 626 QVVIDAGV----IGPLVDLL----QNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 626 ~~~~~~~~----i~~L~~ll----~~~~~~v~~~a~~~L~nl~~ 661 (767)
..+.+.+. .+.+...+ .+.++++...|..++..+..
T Consensus 1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 66555322 34444444 35677888888887776653
No 443
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=24.56 E-value=8.8e+02 Score=27.06 Aligned_cols=108 Identities=14% Similarity=0.005 Sum_probs=73.0
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh--
Q 004225 401 ARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLS-- 478 (767)
Q Consensus 401 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-- 478 (767)
..++.-..+-+ +.+|..+...|+....-....+.+..++...-..|.+.+..+|.....++-.+++..+... .+.+
T Consensus 278 svfvsRy~Dv~-d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d-~ir~f~ 355 (740)
T COG5537 278 SVFVSRYIDVD-DVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD-AIRRFV 355 (740)
T ss_pred HHHhhhccchh-HHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch-HHHHHH
Confidence 34444455556 7888888888887776445555555567777778888889999999999999998777532 1111
Q ss_pred cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCC
Q 004225 479 EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 479 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 511 (767)
...-..+++++..+.+- +|..++..+..+...
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 11344555666444454 888888887776544
No 444
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=24.32 E-value=4.3e+02 Score=22.23 Aligned_cols=93 Identities=13% Similarity=0.032 Sum_probs=53.5
Q ss_pred CHHHHHHHHh-cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh-hhcCCCHHH-HHHHHHHHHHHHHhhhhh
Q 004225 633 VIGPLVDLLQ-NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCD-LLLYADPEI-VTICLKGLENILKVGEAE 709 (767)
Q Consensus 633 ~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~-ll~~~~~~v-~~~al~aL~~l~~~~~~~ 709 (767)
++|.+.+.+. +..++.+..+...++.++.... ++..++..+++ +++...+.. ...++.++..+++..+..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~~~ 79 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-------LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQENV 79 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHccccc
Confidence 5788888888 6678999988888888887532 11113333333 333333332 477888888888644222
Q ss_pred hccCCccccccHHHHHHHh-hchHHHHHHH
Q 004225 710 MNTGTANRYFNHYARLVEA-AEGFKKIEDL 738 (767)
Q Consensus 710 ~~~~~~~~~~~~~~~~l~~-~g~~~~l~~l 738 (767)
.. -+....+.+.+ .+..+.+.++
T Consensus 80 ~~------lp~~~~~~l~~~~~l~~~L~~l 103 (121)
T PF12397_consen 80 DS------LPRKVFKALLKLPDLIELLSEL 103 (121)
T ss_pred cc------CCHHHHHHHHcCccHHHHHHHH
Confidence 21 22334444433 3455666666
No 445
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.66 E-value=1.6e+03 Score=28.57 Aligned_cols=100 Identities=16% Similarity=-0.006 Sum_probs=57.5
Q ss_pred CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhh-cCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHH
Q 004225 645 EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLL-LYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYA 723 (767)
Q Consensus 645 ~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~ 723 (767)
.+..+..|+.+...++..- . .......+++.+..+. .+....++.+++..+...+.......
T Consensus 1500 ~d~a~~~a~~~~~lm~~~~-~---~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~------------- 1562 (1710)
T KOG1851|consen 1500 VDLAKNSALLCHSLMSLSW-I---GHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVS------------- 1562 (1710)
T ss_pred chHHHHHHHHHHHHHHhhc-c---chhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcc-------------
Confidence 3444555555555555431 1 1122223455555433 34577888888888877775433221
Q ss_pred HHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 004225 724 RLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 724 ~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 761 (767)
........-..+..++++..-+|++.|..++..+..+.
T Consensus 1563 ~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s 1600 (1710)
T KOG1851|consen 1563 QELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS 1600 (1710)
T ss_pred cchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc
Confidence 11122233455677788888889999999998776543
No 446
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.41 E-value=2.6e+02 Score=32.81 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred chhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHH---hhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHH
Q 004225 470 PRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLS---RFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEAL 546 (767)
Q Consensus 470 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~---~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 546 (767)
|...+++.+ ++..-..+| .+++..+|..++.++. .+...-++.-.-.....-|.++..+..+|+-+...|+.++
T Consensus 795 ~~qv~iv~k--Il~r~~~~L-S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i 871 (1014)
T KOG4524|consen 795 PDQVKIVLK--ILGRGIHLL-SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCI 871 (1014)
T ss_pred ChHHHHHHH--HHHHHHHHh-cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHH
Q ss_pred HhhccCChhHHHHHHhcCcHHHHHHHhcC
Q 004225 547 SCLSDGTNDKIQAVIEADVCPRLVKLLLH 575 (767)
Q Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 575 (767)
.+++....+....-.-.+++|.+-.++.+
T Consensus 872 ~~m~~~sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 872 EQMGKYSGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 447
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=21.74 E-value=9.3e+02 Score=25.12 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=87.9
Q ss_pred HHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHHh-hCC----C-CHHHHHHHHHHHHH
Q 004225 392 EKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVKL-LSS----P-SDDVREKAVWALGN 464 (767)
Q Consensus 392 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~l-L~~----~-~~~v~~~a~~~L~n 464 (767)
+.+.+..++..|.++-..+..+.++..+++.+.++.. .....+....+..++.++ ++. . ..++...-+..+..
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~~ 82 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLNT 82 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHHH
Confidence 4456778899999988887778999999999999998 222233344455666666 432 2 34455555566666
Q ss_pred HhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC--CCCCccchhchHHHHHHHhcCCCHHHHHHH
Q 004225 465 IARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK--PEPPFDQVRPALPALAQLVHSNDNDVLRYA 542 (767)
Q Consensus 465 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 542 (767)
++.. .+ --+.+++++...+...-.. -....... ........-..+..|+.++.+. ..+-..|
T Consensus 83 lc~~---i~-------~~P~ll~~ff~~~~~~~~~-----~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~A 146 (353)
T PF10257_consen 83 LCSK---IR-------KDPSLLNFFFESSPSQAQE-----EDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFA 146 (353)
T ss_pred HHHH---HH-------hCHHHHHHHhcCCcccccc-----ccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHH
Confidence 6631 11 1244455543222111111 00000000 1111122234667777777766 4444444
Q ss_pred HHHHHhh---ccCChhHHHHHHh-cCcHHHHHHHh
Q 004225 543 CEALSCL---SDGTNDKIQAVIE-ADVCPRLVKLL 573 (767)
Q Consensus 543 ~~~L~~l---~~~~~~~~~~~~~-~~~~~~L~~lL 573 (767)
..++..+ +..++...+.+++ +++.+.+..-|
T Consensus 147 re~LLll~~l~~~~~~~~~~i~~~S~fc~~latgL 181 (353)
T PF10257_consen 147 REGLLLLMSLASEDPALAQYIVEHSDFCPVLATGL 181 (353)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHcchhHHHHHHHH
Confidence 4444444 4334444555665 66666666555
No 448
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.69 E-value=1.3e+03 Score=26.75 Aligned_cols=135 Identities=16% Similarity=0.050 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHh
Q 004225 536 NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTIS 615 (767)
Q Consensus 536 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~ 615 (767)
......+++|+..+..+.-.....+.+...+-.++..+.-..+ .+...+++.++.++.-... ......+.++.
T Consensus 206 ~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~p--nmm~dvvkllsalciV~ee-----~~~ekvl~aiT 278 (1102)
T KOG1924|consen 206 IKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREP--NMMTDVVKLLSALCIVGEE-----NGLEKVLEAIT 278 (1102)
T ss_pred HHHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCc--cHHHHHHHHHHHHheeehh-----hHHHHHHHHHH
Confidence 4455566666666655443222222223345667777777777 7888888888888733221 55666777777
Q ss_pred hhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHH-------HHHHHHcCChHHHHhhhcC
Q 004225 616 NITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ-------IKYLVRKGCIKPLCDLLLY 686 (767)
Q Consensus 616 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~-------~~~l~~~~~i~~L~~ll~~ 686 (767)
.++...+. .-+..++..+...+..-...||..+.|-... ++.. +..+...|.-..|-++-..
T Consensus 279 ~~ae~~~v--------eRF~piv~gl~~~e~~~l~vacmq~INal~t-~p~dldfRlhlR~E~mr~gL~~~l~~l~~i 347 (1102)
T KOG1924|consen 279 TIAEAKPV--------ERFRPIVEGLDFLEKQQLQVACMQFINALVT-SPSDLDFRLHLRSEFMRDGLHKYLPDLTEI 347 (1102)
T ss_pred HHHhhcch--------hhhhhHHHHHhccchHHHHHHHHHHHHHhcC-CHHHhhHHHHHHHHHHHHhHHHHHHHhhhh
Confidence 66664211 1245566667666433333344444443322 2222 2233445555555554443
No 449
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=21.42 E-value=3.3e+02 Score=22.64 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=44.8
Q ss_pred CchHHHHhhccCCC---CHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHHhc
Q 004225 398 GVVARFVEFLTRED---NPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSS--PSDDVREKAVWALGNIAR 467 (767)
Q Consensus 398 g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~nl~~ 467 (767)
|++..+-+.+.+.+ ....|..+..++..+..-....+. .+.|.+...|++ ..++++..|..+...+..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~--~a~pQI~acL~saL~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS--SALPQIMACLQSALEIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 55566666555443 356688888888888761112221 356777777766 678899999988887774
No 450
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.19 E-value=9.8e+02 Score=25.18 Aligned_cols=114 Identities=16% Similarity=0.161 Sum_probs=71.7
Q ss_pred cHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC
Q 004225 565 VCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA 644 (767)
Q Consensus 565 ~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~ 644 (767)
-+.-++.-+++.+. .++..|..-+..+....+...+.- -..+++.+..+..+.
T Consensus 59 tlkeLl~qlkHhNa--------------------------kvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~ 111 (393)
T KOG2149|consen 59 TLKELLSQLKHHNA--------------------------KVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDD 111 (393)
T ss_pred cHHHHHhhhcCchH--------------------------hhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCc
Confidence 35567777788887 555555555555444333322211 123667777788888
Q ss_pred CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 645 EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 645 ~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
+..+|.....++-.++...-++....++. =+++++...+.+-.++++..++..+..++...
T Consensus 112 ~~~vR~~~~qll~~~i~~~~~e~~sp~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 112 DSLVRDALYQLLDSLILPACKEDQSPMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred cccHHHHHHHHHHHHHhhcchhhhcchHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 88999988888888766533343222222 14455555666778889998888888888754
No 451
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.62 E-value=1.2e+03 Score=26.88 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=47.9
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC-CchhHHHHHHHHHHhhcC
Q 004225 605 GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA-EFFTKKEAARAISNAISG 662 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~ 662 (767)
..|..++..++.++...+.....+.++.+++.|+.+|+.+ +..+...|+.+|..+.-.
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 6788899999999998888888899999999999999865 556677777787777654
No 452
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.41 E-value=1.4e+03 Score=26.56 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=63.4
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCc
Q 004225 520 VRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGF 599 (767)
Q Consensus 520 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~ 599 (767)
...+|..|..+..+.=..++..++.++.++..+.+++-.. ++..++.-+.+++. .+...|...|.+|.+..+.
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqn--KiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQN--KIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcch--hhhhhHHHHHHHHHhhCCc
Confidence 3567777777777777999999999999999888877664 55678888999888 9999999999999888876
Q ss_pred ceeeh
Q 004225 600 LTQCT 604 (767)
Q Consensus 600 ~~~~l 604 (767)
+.-.+
T Consensus 375 MK~Vv 379 (988)
T KOG2038|consen 375 MKIVV 379 (988)
T ss_pred ceeeh
Confidence 66544
No 453
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=20.29 E-value=6.4e+02 Score=22.71 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhhcCCCH--------HHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCcccc
Q 004225 647 FTKKEAARAISNAISGGTH--------EQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRY 718 (767)
Q Consensus 647 ~v~~~a~~~L~nl~~~~~~--------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~ 718 (767)
..+.-+...+.++...+.+ .....+++..+.+.|.+.+.+.++.+...++..+..++..-...-
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~L-------- 108 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHL-------- 108 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--------
Confidence 4455555555555443211 133445667788888888887789999999999999986432211
Q ss_pred ccHHHHHHHhhchHHHHH-HHhcCCC--hHHHHHHHHHHHHhcCC
Q 004225 719 FNHYARLVEAAEGFKKIE-DLKRHDS--NGICEKAVKILEIYWSC 760 (767)
Q Consensus 719 ~~~~~~~l~~~g~~~~l~-~l~~~~~--~~v~~~a~~~l~~~~~~ 760 (767)
+..+ +=.+..+. .++++++ ..-|..|.+++..++..
T Consensus 109 ----k~el--e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 109 ----KLEL--EVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred ----HHHH--HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 1111 11123333 3566555 46778899999888764
No 454
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.22 E-value=4.3e+02 Score=28.66 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=57.7
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC--CHHHHHHHHHHHHHHHHh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA--DPEIVTICLKGLENILKV 705 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~aL~~l~~~ 705 (767)
++..|.+-+.+.++.++..|...|-.++..+....-..+.+.+++.-++.+.+.. +..||.+++..|...-..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 4556667777888899999998888787776666666778889999999888854 778999999999877654
No 455
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.04 E-value=1.8e+02 Score=19.54 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=24.0
Q ss_pred hhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 728 AAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 728 ~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
..|+-+.|.+++...++..+..|..++.++
T Consensus 15 ~e~Ar~lL~evl~~~~~~q~~eA~~LL~~l 44 (44)
T TIGR03504 15 LEGARELLEEVIEEGDEAQRQEARALLAQL 44 (44)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 456667788888889999999999998753
Done!