Query 004225
Match_columns 767
No_of_seqs 396 out of 3632
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 3.5E-46 1.2E-50 410.2 43.4 393 360-762 58-481 (510)
2 3tpo_A Importin subunit alpha- 100.0 5.1E-45 1.7E-49 403.6 41.5 393 360-762 77-500 (529)
3 4b8j_A Importin subunit alpha- 100.0 2E-39 6.7E-44 360.8 43.3 401 358-762 73-499 (528)
4 1wa5_B Importin alpha subunit; 100.0 3E-38 1E-42 351.0 43.4 401 358-763 86-514 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 6.9E-38 2.3E-42 341.9 40.9 400 360-763 21-447 (450)
6 1xm9_A Plakophilin 1; armadill 100.0 9.3E-35 3.2E-39 314.1 27.3 381 360-763 3-453 (457)
7 3ul1_B Importin subunit alpha- 100.0 8E-34 2.8E-38 311.9 26.0 344 399-759 58-430 (510)
8 3now_A UNC-45 protein, SD10334 100.0 9.3E-34 3.2E-38 316.0 25.5 357 361-761 379-784 (810)
9 3nmz_A APC variant protein; pr 100.0 3.8E-33 1.3E-37 295.0 28.2 364 355-761 28-452 (458)
10 3tpo_A Importin subunit alpha- 100.0 1.3E-32 4.4E-37 304.3 28.4 344 399-759 77-449 (529)
11 3now_A UNC-45 protein, SD10334 100.0 2.1E-32 7.3E-37 305.0 29.0 385 355-760 286-738 (810)
12 1jdh_A Beta-catenin; beta-cate 100.0 3.4E-31 1.2E-35 295.3 33.4 387 351-757 93-528 (529)
13 2z6h_A Catenin beta-1, beta-ca 100.0 1.2E-30 4.3E-35 296.1 34.2 385 351-757 90-525 (644)
14 3nmz_A APC variant protein; pr 100.0 2.2E-31 7.5E-36 281.5 25.4 330 352-705 63-451 (458)
15 3l6x_A Catenin delta-1; cateni 100.0 4.9E-31 1.7E-35 284.6 28.4 352 393-762 43-479 (584)
16 4b8j_A Importin subunit alpha- 100.0 9.5E-31 3.2E-35 290.8 30.0 344 398-759 74-443 (528)
17 1wa5_B Importin alpha subunit; 100.0 2.5E-30 8.5E-35 287.3 31.0 350 396-760 85-458 (530)
18 3l6x_A Catenin delta-1; cateni 100.0 7.6E-31 2.6E-35 283.1 23.2 339 359-705 48-477 (584)
19 2z6g_A B-catenin; FULL-length, 100.0 7.8E-29 2.7E-33 285.2 38.0 388 352-761 227-665 (780)
20 1jdh_A Beta-catenin; beta-cate 100.0 8.9E-29 3.1E-33 275.7 27.7 381 358-756 16-423 (529)
21 2jdq_A Importin alpha-1 subuni 100.0 5.3E-29 1.8E-33 271.5 23.9 343 359-706 64-445 (450)
22 2z6h_A Catenin beta-1, beta-ca 100.0 4.5E-28 1.5E-32 275.0 29.7 377 357-751 12-415 (644)
23 1xm9_A Plakophilin 1; armadill 100.0 1E-28 3.4E-33 266.9 22.3 322 352-705 37-450 (457)
24 3nmw_A APC variant protein; AR 100.0 5E-29 1.7E-33 256.1 15.8 298 334-663 13-336 (354)
25 2z6g_A B-catenin; FULL-length, 100.0 7.8E-28 2.7E-32 276.9 27.5 379 359-759 192-622 (780)
26 3nmw_A APC variant protein; AR 100.0 8.8E-28 3E-32 246.8 22.6 270 414-707 47-337 (354)
27 4hxt_A De novo protein OR329; 99.9 1.7E-24 5.8E-29 215.7 24.0 243 438-708 2-245 (252)
28 4db8_A Armadillo-repeat protei 99.9 9.3E-25 3.2E-29 217.5 20.4 236 398-661 12-251 (252)
29 4hxt_A De novo protein OR329; 99.9 3.2E-24 1.1E-28 213.8 23.1 238 398-663 2-243 (252)
30 4db8_A Armadillo-repeat protei 99.9 5E-24 1.7E-28 212.2 19.1 239 438-704 12-251 (252)
31 1xqr_A HSPBP1 protein; armadil 99.9 2.6E-22 8.9E-27 200.4 15.9 233 495-761 54-289 (296)
32 3opb_A SWI5-dependent HO expre 99.9 2.7E-21 9.1E-26 211.1 18.8 346 361-743 336-760 (778)
33 4db6_A Armadillo repeat protei 99.9 5.4E-21 1.8E-25 184.3 18.9 199 436-661 10-209 (210)
34 4db6_A Armadillo repeat protei 99.9 5.5E-20 1.9E-24 177.2 24.1 201 519-759 9-209 (210)
35 3opb_A SWI5-dependent HO expre 99.9 3.3E-20 1.1E-24 202.5 24.6 378 361-759 257-728 (778)
36 1xqr_A HSPBP1 protein; armadil 99.8 7.6E-20 2.6E-24 182.6 20.4 180 413-594 54-237 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 2.8E-19 9.7E-24 170.0 14.4 195 399-595 9-229 (233)
38 3tt9_A Plakophilin-2; cell adh 99.7 6E-18 2.1E-22 160.9 12.9 190 360-552 9-230 (233)
39 4fmz_A Internalin; leucine ric 99.7 2.3E-16 8E-21 164.7 21.9 289 5-341 43-342 (347)
40 4fmz_A Internalin; leucine ric 99.7 9.8E-16 3.4E-20 159.9 21.1 270 4-319 64-344 (347)
41 2id5_A Lingo-1, leucine rich r 99.7 7E-15 2.4E-19 160.6 25.2 294 6-342 32-330 (477)
42 3o6n_A APL1; leucine-rich repe 99.7 1.6E-15 5.6E-20 160.9 19.6 290 4-342 43-349 (390)
43 2vgl_B AP-2 complex subunit be 99.7 6.4E-15 2.2E-19 164.5 23.6 320 360-706 87-421 (591)
44 3rgz_A Protein brassinosteroid 99.7 1.5E-15 5.1E-20 175.6 18.7 308 3-341 220-547 (768)
45 1b3u_A Protein (protein phosph 99.7 5.1E-15 1.7E-19 166.8 22.5 365 360-758 204-586 (588)
46 3rgz_A Protein brassinosteroid 99.6 1.8E-15 6.1E-20 174.9 18.7 250 60-341 242-523 (768)
47 4fcg_A Uncharacterized protein 99.6 2.4E-15 8.2E-20 154.9 17.4 224 5-316 80-309 (328)
48 3v47_A TOLL-like receptor 5B a 99.6 8.7E-15 3E-19 159.0 22.8 297 5-341 29-404 (455)
49 3t6q_A CD180 antigen; protein- 99.6 4.8E-15 1.6E-19 167.4 21.3 296 7-342 255-557 (606)
50 1b3u_A Protein (protein phosph 99.6 3.5E-15 1.2E-19 168.1 19.6 364 361-759 166-548 (588)
51 1o6v_A Internalin A; bacterial 99.6 1.3E-14 4.5E-19 157.7 22.3 279 4-342 66-385 (466)
52 3oja_B Anopheles plasmodium-re 99.6 5.6E-15 1.9E-19 165.7 19.9 289 5-342 50-355 (597)
53 4fdd_A Transportin-1; heat rep 99.6 7.2E-15 2.5E-19 172.6 21.7 371 361-757 92-510 (852)
54 3t6q_A CD180 antigen; protein- 99.6 2.3E-14 7.9E-19 161.8 25.0 62 198-262 276-337 (606)
55 3oja_B Anopheles plasmodium-re 99.6 8.1E-15 2.8E-19 164.4 21.1 279 4-319 73-356 (597)
56 3vq2_A TLR4, TOLL-like recepto 99.6 9.3E-15 3.2E-19 165.0 21.2 269 28-341 281-554 (606)
57 3vq2_A TLR4, TOLL-like recepto 99.6 2.7E-14 9.2E-19 161.2 25.0 112 4-131 54-165 (606)
58 4fdd_A Transportin-1; heat rep 99.6 7.3E-15 2.5E-19 172.6 20.3 366 368-759 57-471 (852)
59 4ecn_A Leucine-rich repeat pro 99.6 1.3E-14 4.3E-19 166.6 21.3 309 4-342 489-837 (876)
60 2id5_A Lingo-1, leucine rich r 99.6 1.3E-14 4.6E-19 158.4 20.6 273 3-319 53-331 (477)
61 4eco_A Uncharacterized protein 99.6 5.1E-15 1.7E-19 167.0 17.6 114 4-134 204-345 (636)
62 3o6n_A APL1; leucine-rich repe 99.6 1.9E-14 6.6E-19 152.6 21.1 279 4-319 67-350 (390)
63 1o6v_A Internalin A; bacterial 99.6 3.3E-14 1.1E-18 154.6 23.0 147 150-319 238-386 (466)
64 4ecn_A Leucine-rich repeat pro 99.6 1.1E-14 3.7E-19 167.2 18.5 301 4-339 446-783 (876)
65 2z81_A CD282 antigen, TOLL-lik 99.6 2.3E-14 7.8E-19 159.8 19.5 68 199-268 333-404 (549)
66 2z7x_B TOLL-like receptor 1, v 99.6 4.7E-14 1.6E-18 156.0 21.0 139 197-341 321-477 (520)
67 2z7x_B TOLL-like receptor 1, v 99.6 9.4E-14 3.2E-18 153.6 23.2 87 221-318 321-409 (520)
68 2z63_A TOLL-like receptor 4, v 99.6 4.7E-14 1.6E-18 158.1 20.2 110 5-130 51-160 (570)
69 3j0a_A TOLL-like receptor 5; m 99.6 2.6E-13 8.8E-18 158.6 25.8 106 200-318 266-372 (844)
70 1xku_A Decorin; proteoglycan, 99.6 1.9E-13 6.3E-18 141.4 21.6 284 7-341 32-328 (330)
71 3grl_A General vesicular trans 99.6 9.3E-13 3.2E-17 140.2 26.8 328 360-707 22-397 (651)
72 4fcg_A Uncharacterized protein 99.6 2.9E-14 1E-18 146.7 14.9 130 198-341 181-310 (328)
73 3bz5_A Internalin-J, INLJ; leu 99.6 8.1E-14 2.8E-18 150.1 19.0 98 5-130 41-138 (457)
74 3v47_A TOLL-like receptor 5B a 99.6 1.2E-13 4E-18 150.1 20.4 287 10-341 14-380 (455)
75 4eco_A Uncharacterized protein 99.5 7.6E-14 2.6E-18 157.4 18.9 305 4-342 247-597 (636)
76 2vgl_B AP-2 complex subunit be 99.5 4.8E-13 1.6E-17 149.4 25.2 313 360-705 50-383 (591)
77 1oyz_A Hypothetical protein YI 99.5 3E-13 1E-17 136.2 21.4 228 396-702 21-248 (280)
78 3bz5_A Internalin-J, INLJ; leu 99.5 1E-13 3.5E-18 149.3 18.8 181 4-234 62-243 (457)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 2E-13 6.8E-18 152.2 21.5 141 197-342 350-507 (562)
80 2z81_A CD282 antigen, TOLL-lik 99.5 9.1E-14 3.1E-18 154.9 18.6 114 5-134 25-138 (549)
81 3grl_A General vesicular trans 99.5 3.4E-12 1.2E-16 135.8 28.7 388 358-759 59-550 (651)
82 2ft3_A Biglycan; proteoglycan, 99.5 3.1E-13 1.1E-17 139.7 20.6 283 7-341 34-329 (332)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 4.5E-13 1.6E-17 149.4 23.1 106 6-130 52-157 (562)
84 1ziw_A TOLL-like receptor 3; i 99.5 8.1E-13 2.8E-17 151.3 24.9 238 6-260 248-514 (680)
85 1ogq_A PGIP-2, polygalacturona 99.5 7.3E-14 2.5E-18 142.8 14.0 65 60-130 71-136 (313)
86 3j0a_A TOLL-like receptor 5; m 99.5 9.3E-13 3.2E-17 153.9 24.7 299 2-341 20-371 (844)
87 1oyz_A Hypothetical protein YI 99.5 1.4E-12 4.7E-17 131.3 22.5 255 357-701 21-279 (280)
88 2p1m_B Transport inhibitor res 99.5 7.4E-15 2.5E-19 165.6 4.9 112 222-342 395-516 (594)
89 1ziw_A TOLL-like receptor 3; i 99.5 4.7E-13 1.6E-17 153.2 19.3 108 6-130 25-132 (680)
90 2z63_A TOLL-like receptor 4, v 99.5 6E-13 2.1E-17 149.1 19.0 246 29-341 279-527 (570)
91 2ft3_A Biglycan; proteoglycan, 99.5 1.7E-12 5.9E-17 134.1 21.0 223 64-325 53-280 (332)
92 1ogq_A PGIP-2, polygalacturona 99.5 3.8E-13 1.3E-17 137.5 15.3 256 6-325 50-308 (313)
93 1xku_A Decorin; proteoglycan, 99.5 5E-12 1.7E-16 130.6 23.8 261 31-342 30-303 (330)
94 3zyj_A Leucine-rich repeat-con 99.5 1.8E-12 6E-17 139.7 19.7 133 6-166 64-196 (440)
95 2z66_A Variable lymphocyte rec 99.5 1.3E-12 4.3E-17 133.5 17.2 247 9-319 10-259 (306)
96 3ogk_B Coronatine-insensitive 99.4 1.8E-14 6.2E-19 162.3 3.6 39 4-42 71-122 (592)
97 3o53_A Protein LRIM1, AGAP0063 99.4 3.5E-13 1.2E-17 138.2 12.7 243 4-322 32-276 (317)
98 3oja_A Leucine-rich immune mol 99.4 6.7E-13 2.3E-17 144.3 15.5 99 5-130 33-131 (487)
99 3g06_A SSPH2 (leucine-rich rep 99.4 3.9E-12 1.3E-16 141.1 21.8 254 7-342 41-294 (622)
100 4g8a_A TOLL-like receptor 4; l 99.4 7.5E-12 2.6E-16 142.2 24.8 130 199-341 444-576 (635)
101 2p1m_B Transport inhibitor res 99.4 7.7E-15 2.6E-19 165.4 0.0 289 4-323 64-417 (594)
102 3zyi_A Leucine-rich repeat-con 99.4 2.7E-12 9.3E-17 138.8 19.6 132 7-166 76-207 (452)
103 1ozn_A Reticulon 4 receptor; N 99.4 1.1E-12 3.6E-17 132.5 15.3 221 9-293 14-236 (285)
104 2xwt_C Thyrotropin receptor; s 99.4 1.8E-12 6.1E-17 127.0 15.5 97 16-130 20-116 (239)
105 2z80_A TOLL-like receptor 2, v 99.4 3.5E-12 1.2E-16 133.1 18.3 181 152-342 121-311 (353)
106 3zyj_A Leucine-rich repeat-con 99.4 1.1E-11 3.7E-16 133.5 21.8 132 174-319 159-290 (440)
107 3g06_A SSPH2 (leucine-rich rep 99.4 8.4E-12 2.9E-16 138.4 21.2 237 5-320 60-296 (622)
108 3ogk_B Coronatine-insensitive 99.4 4.1E-13 1.4E-17 151.2 10.1 284 4-319 190-524 (592)
109 2bpt_A Importin beta-1 subunit 99.4 1.1E-11 3.6E-16 146.4 21.6 374 361-757 268-709 (861)
110 3zyi_A Leucine-rich repeat-con 99.4 1.1E-11 3.9E-16 133.9 19.4 131 174-319 170-301 (452)
111 1jl5_A Outer protein YOPM; leu 99.4 3.1E-11 1.1E-15 129.8 21.5 99 3-130 108-206 (454)
112 1qgr_A Protein (importin beta 99.4 5E-11 1.7E-15 140.9 24.5 357 361-757 130-535 (876)
113 1jl5_A Outer protein YOPM; leu 99.3 6.6E-11 2.3E-15 127.2 22.8 227 65-341 131-366 (454)
114 2bpt_A Importin beta-1 subunit 99.3 4.5E-11 1.6E-15 141.0 23.6 350 361-758 136-528 (861)
115 2z80_A TOLL-like receptor 2, v 99.3 1.3E-11 4.5E-16 128.7 15.8 254 5-319 51-312 (353)
116 1w63_A Adapter-related protein 99.3 3.5E-11 1.2E-15 134.6 20.0 312 360-705 108-452 (618)
117 1ibr_B P95, importin beta-1 su 99.3 1.5E-11 5.2E-16 133.7 16.4 362 361-759 37-437 (462)
118 1ozn_A Reticulon 4 receptor; N 99.3 5.2E-11 1.8E-15 120.1 18.2 204 64-319 31-236 (285)
119 1w63_A Adapter-related protein 99.3 8.3E-11 2.8E-15 131.6 21.6 293 360-704 71-379 (618)
120 3ltm_A Alpha-REP4; protein eng 99.3 4.3E-11 1.5E-15 114.7 16.5 188 437-706 18-205 (211)
121 2ast_B S-phase kinase-associat 99.3 1.5E-12 5.3E-17 135.0 6.8 86 198-292 192-282 (336)
122 3o53_A Protein LRIM1, AGAP0063 99.3 9.3E-12 3.2E-16 127.5 12.4 245 3-322 55-300 (317)
123 1z7x_W Ribonuclease inhibitor; 99.3 4.8E-13 1.6E-17 145.5 2.4 237 4-261 26-295 (461)
124 4ay9_X Follicle-stimulating ho 99.3 9.5E-11 3.2E-15 121.8 19.5 243 9-317 12-255 (350)
125 3ltm_A Alpha-REP4; protein eng 99.3 6.8E-11 2.3E-15 113.2 16.9 186 358-595 18-203 (211)
126 3ltj_A Alpharep-4; protein eng 99.3 1.4E-10 4.6E-15 110.2 18.6 184 438-703 14-197 (201)
127 1qgr_A Protein (importin beta 99.3 1.2E-10 4.3E-15 137.5 22.4 375 360-759 36-479 (876)
128 3ltj_A Alpharep-4; protein eng 99.3 9.3E-11 3.2E-15 111.3 17.1 184 398-660 14-197 (201)
129 2xwt_C Thyrotropin receptor; s 99.3 3.6E-11 1.2E-15 117.7 14.2 61 64-129 30-90 (239)
130 4g8a_A TOLL-like receptor 4; l 99.3 2.3E-10 7.9E-15 129.9 22.9 84 248-341 467-551 (635)
131 2ast_B S-phase kinase-associat 99.3 7E-12 2.4E-16 130.0 9.0 207 62-299 90-309 (336)
132 2z66_A Variable lymphocyte rec 99.3 1.2E-10 4.1E-15 118.8 17.5 228 64-342 27-258 (306)
133 1z7x_W Ribonuclease inhibitor; 99.2 3.9E-13 1.3E-17 146.3 -1.4 307 5-342 2-351 (461)
134 1ibr_B P95, importin beta-1 su 99.2 2.3E-11 7.8E-16 132.3 12.1 315 362-707 93-440 (462)
135 3oja_A Leucine-rich immune mol 99.2 5.7E-11 2E-15 129.0 13.9 106 198-319 142-248 (487)
136 4ay9_X Follicle-stimulating ho 99.2 2E-10 6.7E-15 119.4 17.2 229 1-291 24-255 (350)
137 1u6g_C TIP120 protein, CAND1; 99.2 7.6E-10 2.6E-14 135.3 25.1 386 360-759 7-463 (1230)
138 2z62_A TOLL-like receptor 4, v 99.2 3.5E-10 1.2E-14 113.3 16.5 63 62-130 49-111 (276)
139 3rfs_A Internalin B, repeat mo 99.2 2.2E-10 7.6E-15 114.4 14.7 178 29-261 38-216 (272)
140 3rfs_A Internalin B, repeat mo 99.2 1.3E-10 4.5E-15 116.0 13.0 201 63-326 39-240 (272)
141 1h6u_A Internalin H; cell adhe 99.2 2.8E-10 9.6E-15 115.8 14.5 80 30-130 39-118 (308)
142 1h6u_A Internalin H; cell adhe 99.1 4.8E-10 1.6E-14 114.0 15.4 190 4-261 39-228 (308)
143 2z62_A TOLL-like receptor 4, v 99.1 7.2E-10 2.5E-14 111.0 16.3 202 65-318 28-234 (276)
144 2o6q_A Variable lymphocyte rec 99.1 9.8E-10 3.3E-14 109.5 16.9 105 6-130 16-120 (270)
145 1u6g_C TIP120 protein, CAND1; 99.1 9.6E-10 3.3E-14 134.4 20.1 372 360-758 49-505 (1230)
146 2o6q_A Variable lymphocyte rec 99.1 1.9E-09 6.5E-14 107.4 17.7 60 65-130 37-96 (270)
147 2vgl_A Adaptor protein complex 99.1 4.4E-08 1.5E-12 109.1 28.8 304 360-704 75-398 (621)
148 1p9a_G Platelet glycoprotein I 99.1 1.8E-09 6.2E-14 108.5 15.2 104 4-130 8-111 (290)
149 1wwl_A Monocyte differentiatio 99.1 5.6E-10 1.9E-14 114.0 11.6 86 30-131 93-185 (312)
150 4gmo_A Putative uncharacterize 99.0 6.2E-09 2.1E-13 117.6 20.3 191 399-593 35-256 (684)
151 1p9a_G Platelet glycoprotein I 99.0 3.5E-09 1.2E-13 106.5 16.2 107 199-319 99-206 (290)
152 2ca6_A RAN GTPase-activating p 99.0 9.7E-11 3.3E-15 123.8 4.9 248 29-319 29-314 (386)
153 4ezg_A Putative uncharacterize 99.0 3.2E-09 1.1E-13 100.1 12.2 57 64-130 43-99 (197)
154 4glp_A Monocyte differentiatio 99.0 4.1E-09 1.4E-13 107.4 14.0 234 7-293 65-305 (310)
155 2ca6_A RAN GTPase-activating p 99.0 4.6E-10 1.6E-14 118.6 7.0 249 4-293 30-314 (386)
156 2vgl_A Adaptor protein complex 98.9 1.1E-07 3.7E-12 105.9 25.2 292 360-704 112-433 (621)
157 1wwl_A Monocyte differentiatio 98.9 4.3E-09 1.5E-13 107.3 12.7 202 90-342 93-306 (312)
158 4glp_A Monocyte differentiatio 98.9 3.5E-09 1.2E-13 107.9 10.7 208 91-342 90-304 (310)
159 3goz_A Leucine-rich repeat-con 98.9 6.5E-10 2.2E-14 116.1 4.8 113 200-319 167-295 (362)
160 4ezg_A Putative uncharacterize 98.9 1.3E-08 4.5E-13 95.8 13.2 152 116-319 41-192 (197)
161 1h6t_A Internalin B; cell adhe 98.9 1.4E-08 4.7E-13 102.2 13.8 169 29-261 43-211 (291)
162 1m9s_A Internalin B; cell inva 98.9 9.2E-09 3.1E-13 114.0 13.5 169 29-261 40-208 (605)
163 2db0_A 253AA long hypothetical 98.9 4.8E-07 1.6E-11 78.4 20.2 218 435-704 29-246 (253)
164 1h6t_A Internalin B; cell adhe 98.8 2.1E-08 7.2E-13 100.9 12.2 167 63-292 44-210 (291)
165 3m19_A Variable lymphocyte rec 98.8 7.3E-08 2.5E-12 94.7 15.1 105 6-130 14-118 (251)
166 4gmo_A Putative uncharacterize 98.8 2E-08 6.9E-13 113.4 11.5 197 440-660 36-257 (684)
167 3goz_A Leucine-rich repeat-con 98.7 3.7E-09 1.3E-13 110.3 4.0 133 200-342 138-294 (362)
168 1m9s_A Internalin B; cell inva 98.7 4.1E-08 1.4E-12 108.7 12.0 168 63-293 41-208 (605)
169 3m19_A Variable lymphocyte rec 98.7 1.8E-07 6E-12 91.9 15.2 13 90-102 57-69 (251)
170 3tjz_B Coatomer subunit gamma; 98.7 6.5E-07 2.2E-11 90.4 18.4 275 361-700 70-349 (355)
171 3cvr_A Invasion plasmid antige 98.6 3.8E-07 1.3E-11 99.8 15.1 52 65-130 80-131 (571)
172 2db0_A 253AA long hypothetical 98.6 1.1E-05 3.8E-10 70.0 20.1 215 478-758 30-245 (253)
173 4ady_A RPN2, 26S proteasome re 98.6 3.3E-06 1.1E-10 94.9 21.8 303 361-711 394-726 (963)
174 2o6s_A Variable lymphocyte rec 98.5 3.3E-07 1.1E-11 87.1 11.0 156 31-241 27-182 (208)
175 4ady_A RPN2, 26S proteasome re 98.5 6.2E-06 2.1E-10 92.8 22.6 281 372-705 371-677 (963)
176 3b2a_A TON_1937, putative unch 98.5 1.2E-06 4.1E-11 79.7 13.6 224 480-757 33-259 (265)
177 1xeu_A Internalin C; cellular 98.5 1.4E-07 4.6E-12 93.3 8.3 58 198-261 126-183 (263)
178 2qk2_A LP04448P; mini spindles 98.5 5.6E-07 1.9E-11 87.7 12.3 187 483-706 18-207 (242)
179 2ell_A Acidic leucine-rich nuc 98.5 1.9E-07 6.6E-12 85.2 8.0 10 200-209 95-104 (168)
180 3b2a_A TON_1937, putative unch 98.5 2.1E-06 7.2E-11 78.1 14.1 190 521-762 32-221 (265)
181 3tjz_B Coatomer subunit gamma; 98.5 3.2E-06 1.1E-10 85.4 16.5 99 632-754 250-348 (355)
182 2ell_A Acidic leucine-rich nuc 98.5 2.7E-07 9.1E-12 84.3 7.7 59 198-260 47-105 (168)
183 2qk2_A LP04448P; mini spindles 98.5 1.2E-06 4.1E-11 85.3 12.7 180 363-552 19-206 (242)
184 1xeu_A Internalin C; cellular 98.4 2.4E-07 8.1E-12 91.5 7.0 36 221-260 125-160 (263)
185 3cvr_A Invasion plasmid antige 98.4 2.4E-06 8E-11 93.6 15.5 183 66-320 60-242 (571)
186 2je0_A Acidic leucine-rich nuc 98.4 2.4E-07 8.3E-12 82.6 6.3 35 64-102 16-52 (149)
187 2o6s_A Variable lymphocyte rec 98.4 1.1E-06 3.8E-11 83.3 11.3 61 64-130 27-87 (208)
188 3sb4_A Hypothetical leucine ri 98.4 6.7E-07 2.3E-11 91.7 9.9 100 223-337 225-326 (329)
189 2je0_A Acidic leucine-rich nuc 98.4 2.9E-07 9.8E-12 82.1 5.8 127 199-339 16-147 (149)
190 2v70_A SLIT-2, SLIT homolog 2 98.4 2.8E-06 9.7E-11 81.2 13.0 34 8-42 34-67 (220)
191 3e4g_A ATP synthase subunit S, 98.4 2.9E-07 9.9E-12 82.6 5.5 91 200-298 61-155 (176)
192 3e6j_A Variable lymphocyte rec 98.4 2.9E-06 9.8E-11 81.8 12.9 109 197-319 61-170 (229)
193 2v9t_B SLIT homolog 2 protein 98.3 4.1E-06 1.4E-10 80.1 13.1 107 7-130 33-139 (220)
194 1te4_A Conserved protein MTH18 98.3 7.9E-08 2.7E-12 83.5 0.6 122 396-549 10-131 (131)
195 2xot_A Amphoterin-induced prot 98.3 2.4E-06 8.3E-11 88.7 10.9 103 9-131 21-124 (361)
196 2qk1_A Protein STU2; STU2P, XM 98.3 6.4E-06 2.2E-10 80.0 12.9 195 485-707 21-223 (249)
197 2v70_A SLIT-2, SLIT homolog 2 98.2 8.3E-06 2.8E-10 77.9 12.8 60 199-260 104-163 (220)
198 3e6j_A Variable lymphocyte rec 98.2 1.2E-05 4E-10 77.4 14.0 37 90-129 62-98 (229)
199 3e4g_A ATP synthase subunit S, 98.2 4.9E-07 1.7E-11 81.1 3.8 90 32-134 61-154 (176)
200 1te4_A Conserved protein MTH18 98.2 2.5E-07 8.7E-12 80.2 1.3 120 436-591 10-129 (131)
201 1a9n_A U2A', U2A'; complex (nu 98.2 4.4E-06 1.5E-10 76.7 9.6 134 4-166 17-151 (176)
202 2xot_A Amphoterin-induced prot 98.2 5.6E-06 1.9E-10 86.0 10.8 156 64-261 38-200 (361)
203 1ho8_A Vacuolar ATP synthase s 98.2 0.00012 4.1E-09 75.5 19.5 322 398-758 77-475 (480)
204 2qk1_A Protein STU2; STU2P, XM 98.1 6.1E-06 2.1E-10 80.1 8.8 194 442-661 20-220 (249)
205 2v9t_B SLIT homolog 2 protein 98.1 2.7E-05 9.4E-10 74.2 13.2 109 198-318 54-162 (220)
206 1ho8_A Vacuolar ATP synthase s 98.1 8.8E-05 3E-09 76.5 17.3 338 361-704 79-476 (480)
207 1dce_A Protein (RAB geranylger 98.1 2.1E-07 7.2E-12 102.4 -2.2 83 197-288 483-566 (567)
208 1a9n_A U2A', U2A'; complex (nu 98.1 3.2E-06 1.1E-10 77.7 5.9 126 199-341 18-149 (176)
209 2iw3_A Elongation factor 3A; a 98.1 0.00027 9.1E-09 80.8 22.0 305 360-708 15-328 (986)
210 1w8a_A SLIT protein; signaling 98.0 3.1E-05 1E-09 72.1 10.9 129 9-168 11-139 (192)
211 4fdw_A Leucine rich hypothetic 98.0 0.001 3.4E-08 69.6 22.8 125 200-341 248-379 (401)
212 2o6r_A Variable lymphocyte rec 97.9 5.4E-05 1.9E-09 69.4 10.7 129 8-168 9-137 (177)
213 1wa5_C Importin alpha RE-expor 97.9 0.00089 3E-08 79.2 23.0 370 361-760 37-526 (960)
214 3dad_A FH1/FH2 domain-containi 97.8 0.0004 1.4E-08 67.9 15.4 191 523-748 119-325 (339)
215 3sb4_A Hypothetical leucine ri 97.8 0.00028 9.7E-09 72.0 14.8 101 199-314 225-327 (329)
216 1dce_A Protein (RAB geranylger 97.8 8.4E-05 2.9E-09 81.7 10.9 103 7-131 442-545 (567)
217 1wa5_C Importin alpha RE-expor 97.8 0.0011 3.7E-08 78.5 21.1 309 355-705 121-526 (960)
218 1w8a_A SLIT protein; signaling 97.7 0.00026 8.9E-09 65.7 11.8 37 199-235 101-137 (192)
219 2wfh_A SLIT homolog 2 protein 97.7 0.00017 5.7E-09 67.1 10.3 127 9-168 13-139 (193)
220 2o6r_A Variable lymphocyte rec 97.7 0.00016 5.5E-09 66.2 9.8 108 199-319 27-135 (177)
221 3m1i_C Exportin-1; heat repeat 97.6 0.0061 2.1E-07 72.7 25.6 338 361-707 140-572 (1049)
222 4hat_C Exportin-1; heat repeat 97.6 0.0033 1.1E-07 73.7 22.4 338 361-708 140-573 (1023)
223 2ra8_A Uncharacterized protein 97.6 0.00023 7.9E-09 73.0 10.7 66 248-319 250-318 (362)
224 4fdw_A Leucine rich hypothetic 97.6 0.0019 6.6E-08 67.4 17.6 235 7-291 136-379 (401)
225 2iw3_A Elongation factor 3A; a 97.6 0.0059 2E-07 69.9 22.4 258 361-660 56-323 (986)
226 1ds9_A Outer arm dynein; leuci 97.6 6.7E-06 2.3E-10 77.1 -1.3 12 249-260 114-125 (198)
227 4b8c_D Glucose-repressible alc 97.6 0.0001 3.5E-09 83.8 8.1 108 196-319 220-327 (727)
228 3dad_A FH1/FH2 domain-containi 97.4 0.0008 2.8E-08 65.8 11.4 193 485-694 123-326 (339)
229 2ra8_A Uncharacterized protein 97.4 0.00015 5.2E-09 74.4 6.5 160 4-186 137-318 (362)
230 2wfh_A SLIT homolog 2 protein 97.4 0.00083 2.8E-08 62.3 10.9 57 200-259 78-135 (193)
231 1ds9_A Outer arm dynein; leuci 97.4 2.4E-05 8.2E-10 73.3 -0.2 15 221-235 137-151 (198)
232 4b8c_D Glucose-repressible alc 97.3 0.00026 8.8E-09 80.5 7.7 108 219-342 219-326 (727)
233 4fs7_A Uncharacterized protein 97.3 0.013 4.3E-07 61.3 19.4 36 3-41 68-103 (394)
234 3m1i_C Exportin-1; heat repeat 97.2 0.12 4.2E-06 61.4 29.6 184 360-550 49-262 (1049)
235 3un9_A NLR family member X1; l 97.2 8.8E-05 3E-09 76.8 1.6 169 91-293 71-250 (372)
236 2x1g_F Cadmus; transport prote 97.2 0.038 1.3E-06 65.4 24.3 317 398-757 348-720 (971)
237 2r9u_A Variable lymphocyte rec 97.2 0.0017 5.7E-08 59.0 9.8 104 8-131 14-117 (174)
238 3un9_A NLR family member X1; l 97.1 0.00024 8.1E-09 73.6 4.1 188 91-319 46-250 (372)
239 2x1g_F Cadmus; transport prote 97.1 0.015 5.1E-07 68.9 20.2 290 371-705 256-616 (971)
240 3g39_A Variable lymphocyte rec 97.1 0.0018 6.3E-08 58.5 9.6 105 7-131 10-114 (170)
241 4ffb_C Protein STU2; tubulin f 97.1 0.0051 1.7E-07 60.7 13.4 185 360-553 11-214 (278)
242 2x19_B Importin-13; nuclear tr 97.1 0.04 1.4E-06 65.2 23.0 104 360-467 58-175 (963)
243 4fs7_A Uncharacterized protein 97.0 0.025 8.5E-07 59.0 18.3 37 27-73 66-102 (394)
244 3g39_A Variable lymphocyte rec 97.0 0.0018 6.2E-08 58.5 8.1 85 5-103 29-113 (170)
245 2r9u_A Variable lymphocyte rec 96.8 0.0021 7.2E-08 58.3 7.2 64 200-267 33-97 (174)
246 2ifg_A High affinity nerve gro 96.8 0.0046 1.6E-07 63.4 10.7 105 9-131 11-115 (347)
247 2x19_B Importin-13; nuclear tr 96.8 0.091 3.1E-06 62.1 23.1 138 408-553 459-601 (963)
248 3ibv_A Exportin-T; karyopherin 96.8 0.027 9.1E-07 66.0 17.8 318 408-759 203-566 (980)
249 3gjx_A Exportin-1; transport, 96.7 0.52 1.8E-05 55.1 27.8 294 370-709 218-600 (1073)
250 4hat_C Exportin-1; heat repeat 96.7 0.044 1.5E-06 64.3 19.0 363 371-758 465-877 (1023)
251 3ibv_A Exportin-T; karyopherin 96.7 0.012 4.1E-07 68.9 13.9 303 370-708 204-570 (980)
252 3oc3_A Helicase MOT1, MOT1; re 96.6 0.045 1.5E-06 56.9 15.4 254 360-700 175-432 (800)
253 4ffb_C Protein STU2; tubulin f 96.5 0.038 1.3E-06 54.4 14.4 194 527-759 14-212 (278)
254 2ifg_A High affinity nerve gro 96.5 0.0057 2E-07 62.7 8.6 93 187-292 20-113 (347)
255 1upk_A MO25 protein; transfera 96.3 0.25 8.5E-06 48.3 18.1 198 521-757 77-281 (341)
256 2of3_A ZYG-9; multifunctional 96.3 0.028 9.5E-07 53.9 11.3 178 361-552 48-237 (266)
257 2fv2_A RCD1 required for cell 96.3 0.13 4.5E-06 47.9 15.2 202 535-757 14-222 (268)
258 4gt6_A Cell surface protein; l 96.2 0.33 1.1E-05 50.4 20.3 39 7-48 65-105 (394)
259 3c2g_A SYS-1 protein; beta-cat 96.2 0.43 1.5E-05 46.3 18.4 291 429-757 275-616 (619)
260 3oc3_A Helicase MOT1, MOT1; re 96.1 0.016 5.5E-07 60.1 9.1 190 494-755 241-432 (800)
261 1lrv_A LRV, leucine-rich repea 96.0 0.0028 9.5E-08 60.5 2.9 189 362-699 52-241 (244)
262 3u0r_A Apoptosis inhibitor 5; 95.8 1.4 4.9E-05 45.3 21.6 304 362-708 32-362 (507)
263 1upk_A MO25 protein; transfera 95.8 1 3.5E-05 44.1 19.4 228 475-742 73-313 (341)
264 3l9t_A Putative uncharacterize 95.6 0.18 6.3E-06 46.6 13.1 144 400-562 73-218 (240)
265 2of3_A ZYG-9; multifunctional 95.5 0.26 8.9E-06 47.1 14.3 101 633-759 133-236 (266)
266 3gjx_A Exportin-1; transport, 95.5 0.76 2.6E-05 53.8 20.9 321 401-759 209-595 (1073)
267 4h09_A Hypothetical leucine ri 95.1 1.7 5.8E-05 44.6 20.5 33 6-41 46-78 (379)
268 3c2g_A SYS-1 protein; beta-cat 94.9 0.39 1.3E-05 46.5 13.1 115 462-578 266-381 (619)
269 2fv2_A RCD1 required for cell 94.5 0.44 1.5E-05 44.5 12.0 99 605-705 117-225 (268)
270 1io0_A Tropomodulin; LRR prote 94.4 0.016 5.5E-07 53.0 2.5 123 29-166 33-162 (185)
271 1lrv_A LRV, leucine-rich repea 94.2 0.017 5.9E-07 54.9 2.1 69 361-460 76-144 (244)
272 1io0_A Tropomodulin; LRR prote 94.0 0.037 1.3E-06 50.5 4.0 41 90-130 34-76 (185)
273 3u0r_A Apoptosis inhibitor 5; 94.0 1.4 4.9E-05 45.3 15.7 93 450-554 40-132 (507)
274 3l9t_A Putative uncharacterize 93.7 0.71 2.4E-05 42.8 11.8 143 440-630 73-218 (240)
275 4gt6_A Cell surface protein; l 93.3 2.1 7.1E-05 44.2 16.5 100 197-315 285-385 (394)
276 3a6p_A Exportin-5; exportin-5, 92.8 5.1 0.00017 48.1 20.9 311 413-762 27-383 (1204)
277 3rw6_A Nuclear RNA export fact 92.0 0.08 2.7E-06 51.1 3.1 85 29-126 167-258 (267)
278 3ebb_A Phospholipase A2-activa 91.5 0.98 3.4E-05 44.3 10.4 111 402-512 151-265 (304)
279 2f31_A Diaphanous protein homo 90.9 1.4 4.7E-05 41.6 10.5 139 605-751 69-220 (233)
280 3ebb_A Phospholipase A2-activa 90.9 1.5 5E-05 43.1 10.9 131 370-501 159-297 (304)
281 3a6p_A Exportin-5; exportin-5, 90.6 14 0.00046 44.4 21.1 215 361-596 13-277 (1204)
282 3rw6_A Nuclear RNA export fact 90.4 0.12 3.9E-06 50.0 2.5 91 63-164 168-260 (267)
283 3eg5_B Protein diaphanous homo 90.2 2.4 8.3E-05 43.2 12.3 136 605-748 135-283 (383)
284 1lsh_A Lipovitellin (LV-1N, LV 89.9 11 0.00039 44.2 19.3 175 482-705 393-577 (1056)
285 1vdy_A Hypothetical protein (R 88.0 1.2 4.2E-05 37.5 6.7 77 676-764 50-135 (140)
286 2bnx_A Diaphanous protein homo 86.9 5.1 0.00017 40.9 12.1 137 605-749 73-222 (386)
287 4h09_A Hypothetical leucine ri 84.7 36 0.0012 34.4 20.1 102 198-315 238-340 (379)
288 2f31_A Diaphanous protein homo 83.5 22 0.00074 33.2 13.9 124 429-554 35-183 (233)
289 3ldz_A STAM-1, signal transduc 82.9 2 6.9E-05 36.5 5.8 74 633-706 43-116 (140)
290 3ldz_A STAM-1, signal transduc 82.6 5.5 0.00019 33.8 8.4 70 676-757 43-112 (140)
291 3eg5_B Protein diaphanous homo 81.4 30 0.001 35.0 15.0 146 429-577 101-277 (383)
292 1x5b_A Signal transducing adap 81.3 4.8 0.00017 35.2 7.8 70 676-757 53-123 (163)
293 3g2s_A C-terminal fragment of 81.2 2.7 9.2E-05 36.1 6.0 93 633-732 49-147 (149)
294 3qml_C Protein SLS1, nucleotid 80.5 8.8 0.0003 36.9 9.7 134 606-759 44-189 (315)
295 3rfe_A Platelet glycoprotein I 79.7 1.6 5.5E-05 36.7 4.0 35 33-76 32-66 (130)
296 3gs3_A Symplekin, LD45768P; he 79.0 15 0.00052 34.8 10.9 90 647-759 30-119 (257)
297 1lsh_A Lipovitellin (LV-1N, LV 78.9 17 0.00058 42.8 13.8 117 439-578 392-526 (1056)
298 3gs3_A Symplekin, LD45768P; he 78.8 45 0.0015 31.5 18.9 190 361-558 17-250 (257)
299 3o2t_A Symplekin; heat repeat, 78.7 58 0.002 32.8 17.1 178 374-559 40-264 (386)
300 1juq_A ADP-ribosylation factor 77.5 7.6 0.00026 34.2 7.9 70 676-757 51-126 (171)
301 1x5b_A Signal transducing adap 77.3 3.7 0.00013 35.9 5.8 73 633-705 53-126 (163)
302 1mhq_A ADP-ribosylation factor 76.7 7.7 0.00026 33.2 7.5 70 676-757 39-114 (148)
303 1mhq_A ADP-ribosylation factor 76.6 5.3 0.00018 34.3 6.4 74 633-706 39-118 (148)
304 3g2s_A C-terminal fragment of 74.6 11 0.00037 32.3 7.8 70 676-757 49-124 (149)
305 2npp_B PP2A, B subunit, serine 73.7 35 0.0012 35.2 12.6 235 392-667 156-404 (449)
306 1juq_A ADP-ribosylation factor 71.0 6.1 0.00021 34.8 5.6 74 633-706 51-130 (171)
307 3fga_B Serine/threonine-protei 70.3 20 0.00068 36.3 9.7 176 395-578 126-307 (403)
308 2bnx_A Diaphanous protein homo 69.3 57 0.0019 33.1 13.2 146 535-694 71-222 (386)
309 3o2t_A Symplekin; heat repeat, 68.6 29 0.00099 35.0 10.5 89 647-758 40-128 (386)
310 3qml_C Protein SLS1, nucleotid 67.8 38 0.0013 32.6 10.5 131 415-550 44-188 (315)
311 2npp_B PP2A, B subunit, serine 66.3 1.2E+02 0.0041 31.2 14.7 233 432-706 156-401 (449)
312 3fga_B Serine/threonine-protei 63.0 1.3E+02 0.0045 30.3 15.0 233 433-707 124-369 (403)
313 3zyq_A Hepatocyte growth facto 62.6 9.1 0.00031 35.6 5.2 74 633-706 46-120 (226)
314 1dvp_A HRS, hepatocyte growth 60.9 22 0.00077 32.8 7.6 70 676-757 43-113 (220)
315 3zyq_A Hepatocyte growth facto 60.3 17 0.00057 33.8 6.6 70 676-757 46-116 (226)
316 3ut4_A CTHE_2751, putative unc 58.5 42 0.0014 27.8 7.8 95 633-760 32-131 (134)
317 2xpp_A IWS1, ECU08_0440; trans 57.6 30 0.001 29.3 7.0 74 667-757 53-134 (145)
318 1elk_A Target of MYB1; superhe 56.2 35 0.0012 29.4 7.5 70 676-757 54-128 (157)
319 1pgv_A TMD-1, tropomodulin TMD 55.0 13 0.00044 33.6 4.7 39 92-130 41-81 (197)
320 1vsy_5 Proteasome activator BL 53.2 92 0.0031 36.2 12.5 209 481-705 134-366 (997)
321 1pgv_A TMD-1, tropomodulin TMD 49.9 12 0.00042 33.8 3.7 64 63-130 39-109 (197)
322 1elk_A Target of MYB1; superhe 49.8 27 0.00092 30.1 5.7 73 633-705 54-131 (157)
323 1dvp_A HRS, hepatocyte growth 45.0 28 0.00097 32.0 5.5 73 634-706 44-117 (220)
324 3l3f_X Protein DOA1, DOA1/UFD3 44.4 31 0.0011 34.4 5.9 102 370-473 210-332 (362)
325 3pst_A Protein DOA1; protein d 43.8 71 0.0024 32.5 8.4 105 370-474 273-396 (425)
326 1vsy_5 Proteasome activator BL 40.6 1.5E+02 0.0052 34.3 11.7 184 361-551 135-365 (997)
327 3gae_A Protein DOA1; UFD3, CDC 40.5 35 0.0012 32.3 5.4 102 370-472 101-222 (253)
328 3rfe_A Platelet glycoprotein I 38.0 36 0.0012 28.2 4.5 36 92-130 31-66 (130)
329 2jak_A Serine/threonine-protei 37.9 24 0.00082 35.6 3.9 74 395-470 171-248 (392)
330 1vdy_A Hypothetical protein (R 37.6 69 0.0024 26.9 6.1 72 633-704 50-130 (140)
331 3nfq_A Transcription factor IW 34.3 1.2E+02 0.0041 26.3 7.1 76 666-758 67-150 (170)
332 2b6c_A Hypothetical protein EF 31.3 3E+02 0.01 25.0 11.9 141 401-562 58-199 (220)
333 3jxy_A Alkylpurine DNA glycosy 27.2 3.6E+02 0.012 24.6 11.3 141 402-563 65-207 (232)
334 4atg_A TAF6; transcription, TF 27.2 2.9E+02 0.01 24.6 8.8 97 481-578 41-145 (196)
335 2jak_A Serine/threonine-protei 25.8 3.3E+02 0.011 27.3 9.8 79 433-512 169-247 (392)
336 1wjt_A Transcription elongatio 23.7 63 0.0022 25.4 3.3 35 723-757 47-82 (103)
337 3gae_A Protein DOA1; UFD3, CDC 23.1 1.7E+02 0.0057 27.5 6.9 102 449-553 101-219 (253)
338 3rru_A TOM1L1 protein; structu 22.8 70 0.0024 27.3 3.7 73 633-705 54-131 (152)
339 2xpp_A IWS1, ECU08_0440; trans 22.1 3.5E+02 0.012 22.7 8.0 77 429-509 52-135 (145)
340 4atg_A TAF6; transcription, TF 21.3 3.4E+02 0.012 24.2 8.0 128 438-574 40-178 (196)
341 3pst_A Protein DOA1; protein d 20.3 2.1E+02 0.0071 29.2 7.1 105 447-554 271-392 (425)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.5e-46 Score=410.24 Aligned_cols=393 Identities=44% Similarity=0.660 Sum_probs=362.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhH
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTN 432 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~ 432 (767)
.++.+++.+.|+|++.+..|+..++++. +++.+.+++.|++|.|+++|++++++.+|..|+|+|+|++. +++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999987 67789999999999999999877669999999999999998 7888
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCC-----ChHHHHHHHHHHHh
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHA-----KPSMLRNATKTLSR 507 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~~~~~~L~~ 507 (767)
.+++.|++|.|+.+|.+++++++++|+|+|+|++.+++..++.+.+.|++++++.++. .. ...+++.++|++++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~-~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA-VPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC-SSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH-hccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999994 43 34578999999999
Q ss_pred hcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchH
Q 004225 508 FCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPP 586 (767)
Q Consensus 508 l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a 586 (767)
++.+. +........+++|.|+.++.+++++++..++|+|.+++...++..+.+.+.|+++.|+.++.+.+. .++..|
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~a 294 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL--PIVTPA 294 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCH--HHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCCh--hhhhHH
Confidence 99987 555666778999999999999999999999999999999998888889999999999999999998 999999
Q ss_pred HHHHhhhhccCCcceeeh------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchh
Q 004225 587 LWTVRYIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFT 648 (767)
Q Consensus 587 ~~~L~~l~~~~~~~~~~l------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 648 (767)
+++++|++.+++...+.+ .+++.|+|+++|++.++....+.+++.|+++.|+.++++++.++
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 999999998776554433 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHh
Q 004225 649 KKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEA 728 (767)
Q Consensus 649 ~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 728 (767)
|++|+|+|+|++.+++.+++.++++.|++++|+++++++|++++..++++|.++++.++... ..+.++..+++
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee 447 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEE 447 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999998776433 45678999999
Q ss_pred hchHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Q 004225 729 AEGFKKIEDLKRHDSNGICEKAVKILEIYWSCGV 762 (767)
Q Consensus 729 ~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 762 (767)
+|++++|+.|++|+|.+|+++|..+|++||+.|+
T Consensus 448 ~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 481 (510)
T 3ul1_B 448 CGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 481 (510)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999999999999999998653
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5.1e-45 Score=403.61 Aligned_cols=393 Identities=44% Similarity=0.657 Sum_probs=360.7
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhH
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTN 432 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~ 432 (767)
.++.+++.+.+++++.+..|+..++++. +++.+.+++.|++|.|+++|..++++.++..|+|+|++++. ++..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6899999999999999999999999987 56789999999999999999877669999999999999998 6778
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCC-----ChHHHHHHHHHHHh
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHA-----KPSMLRNATKTLSR 507 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~~~~~~L~~ 507 (767)
.+++.|++|.|+.+|.+++++++++|+|+|+|++.++++.++.+++.|++++++.++. .+ ...+++.++|++++
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA-VPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC-SSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh-ccchhHhHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999994 33 34578999999999
Q ss_pred hcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchH
Q 004225 508 FCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPP 586 (767)
Q Consensus 508 l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a 586 (767)
++.+. +........+++|.|+.++.+++++++..++|+|.+++.+.++..+.+.+.|+++.|+.++.+.+. .++..|
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--~v~~~a 313 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL--PIVTPA 313 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCH--HHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCCh--hHHHHH
Confidence 99987 555666778999999999999999999999999999999998888889999999999999999998 999999
Q ss_pred HHHHhhhhccCCcceeeh------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchh
Q 004225 587 LWTVRYIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFT 648 (767)
Q Consensus 587 ~~~L~~l~~~~~~~~~~l------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 648 (767)
+++++|++.+++...+.+ .++++|+|+++|++.+++...+.+++.|+++.++.++.+++.++
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 999999998776554433 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHh
Q 004225 649 KKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEA 728 (767)
Q Consensus 649 ~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 728 (767)
+.+|+|+|+|++.+++++++..+++.|++++|++++.++|++++..++++|.+++..++... ..+.++..+++
T Consensus 394 ~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee 466 (529)
T 3tpo_A 394 QKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEE 466 (529)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999998776433 45678899999
Q ss_pred hchHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Q 004225 729 AEGFKKIEDLKRHDSNGICEKAVKILEIYWSCGV 762 (767)
Q Consensus 729 ~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 762 (767)
+|++++|+.|++|+|.+|+++|..+|++||+.|+
T Consensus 467 ~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 500 (529)
T 3tpo_A 467 CGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 500 (529)
T ss_dssp TTCHHHHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999999999999999998653
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2e-39 Score=360.81 Aligned_cols=401 Identities=70% Similarity=1.035 Sum_probs=363.2
Q ss_pred hcCHHHHHhhhcCCCHHHHHHHHHHHHHhc----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hh
Q 004225 358 LVSLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---EN 430 (767)
Q Consensus 358 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~ 430 (767)
...+|.+++.+.++++.++..|+..|++++ .+....+++.|+++.|++++.+++++.++..|+++|.+++. +.
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 357999999999999999999999999997 25688899999999999999987668999999999999999 67
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcC
Q 004225 431 TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 431 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 510 (767)
+..+++.|++|.|+.+|.++++.++..|+|+|++++.+.+..+..+.+.|+++.++.++..+.+..+++.++|+|++++.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 88889999999999999999999999999999999998888999999999999999999667889999999999999999
Q ss_pred CCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHH
Q 004225 511 GKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 511 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L 590 (767)
..+........+++|.|+.++.+++++++..++|+|.+++...++..+.+.+.|+++.++.+|.+.+. .++..|+++|
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~--~v~~~a~~~L 310 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP--SVLIPALRTV 310 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCH--HHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCCh--hHHHHHHHHH
Confidence 87777777889999999999999999999999999999999988888888899999999999999998 9999999999
Q ss_pred hhhhccCCcceeeh-------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHH
Q 004225 591 RYIVKGDGFLTQCT-------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKE 651 (767)
Q Consensus 591 ~~l~~~~~~~~~~l-------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 651 (767)
++++.+.+...+.+ .++++|+|+++|++.++++..+.+++.|+++.|+.++.+.++.++.+
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 390 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE 390 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 99998665433222 78899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhch
Q 004225 652 AARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEG 731 (767)
Q Consensus 652 a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 731 (767)
|+++|+|++..++++...++++.|+++.|+.++.+++++++..++++|.+++..++........ ..+.++..+.+.|+
T Consensus 391 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~~~~~~i~~~~~ 468 (528)
T 4b8j_A 391 AAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAG--DVNVFSQMIDEAEG 468 (528)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTC--SCCHHHHHHHHTTH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccc--cccHHHHHHHHCCc
Confidence 9999999999877899999999999999999999999999999999999999876653321100 34668999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Q 004225 732 FKKIEDLKRHDSNGICEKAVKILEIYWSCGV 762 (767)
Q Consensus 732 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 762 (767)
++.+..++++++++++++|.+++++||+.++
T Consensus 469 ~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 469 LEKIENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999999999999998754
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3e-38 Score=351.00 Aligned_cols=401 Identities=51% Similarity=0.724 Sum_probs=360.6
Q ss_pred hcCHHHHHhhhcCCCHHHHHHHHHHHHHhc----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hh
Q 004225 358 LVSLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---EN 430 (767)
Q Consensus 358 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~ 430 (767)
.+.+|.+++.++++++.++..|+..|++++ .++...+++.|+++.|++++.+++++.++..|+++|.+++. +.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 357999999999999999999999999997 34567888999999999999997339999999999999998 57
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcC
Q 004225 431 TNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 431 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 510 (767)
+..+++.|+++.|+.+|.++++.++..|+|+|++++.+.+..++.+...|+++.++.++ .+.+..+++.++|+|++++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhC
Confidence 78888999999999999999999999999999999998888999999999999999999 67899999999999999998
Q ss_pred CC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHH
Q 004225 511 GK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWT 589 (767)
Q Consensus 511 ~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~ 589 (767)
.. +........+++|.|+.++.++++.++..++|+|.+++...++..+.+.+.++++.++.++.+.+. .++..|+++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~--~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST--LVQTPALRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH--HHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCCh--hhHHHHHHH
Confidence 87 677777788999999999999999999999999999999888888888888999999999999888 999999999
Q ss_pred HhhhhccCCcceeeh------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHH
Q 004225 590 VRYIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKE 651 (767)
Q Consensus 590 L~~l~~~~~~~~~~l------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 651 (767)
|++++.+++...+.+ .++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 402 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 402 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 999997765433322 78999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCH--HHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhh
Q 004225 652 AARAISNAISGGTH--EQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAA 729 (767)
Q Consensus 652 a~~~L~nl~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 729 (767)
|+|+|+|++..+++ +....+++.|+++.|+.++.+++++++..++++|.+++...+...... +...+.++..+.+.
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~ 480 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR--GLNINENADFIEKA 480 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSSCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc--cccccHHHHHHHHc
Confidence 99999999987666 788889999999999999999999999999999999998766532110 00346689999999
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhcCCCcc
Q 004225 730 EGFKKIEDLKRHDSNGICEKAVKILEIYWSCGVI 763 (767)
Q Consensus 730 g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 763 (767)
|+++.|..++++++++|+++|.++|++||..++-
T Consensus 481 g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~ 514 (530)
T 1wa5_B 481 GGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514 (530)
T ss_dssp THHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 9999999999999999999999999999987653
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=6.9e-38 Score=341.90 Aligned_cols=400 Identities=54% Similarity=0.769 Sum_probs=356.5
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc----CCChHHHHhc-CchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhh
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL----LPPSEKVIQS-GVVARFVEFLTREDNPQLQLEAARALTNIAS---ENT 431 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~----~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~ 431 (767)
.+|.+++.++++++.++..|+..|++++ ++....+++. |+++.|++++++++++.++..|+++|.+++. +..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 4899999999999999999999999986 4456777887 9999999999998449999999999999998 566
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCC
Q 004225 432 NVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 511 (767)
..+++.|++|.|+++++++++.++..|+++|++++.+.+..++.+++.|+++.++.++.++.+..+++.++|++++++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 77788999999999999999999999999999999998889999999999999999994457899999999999999987
Q ss_pred C-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHH
Q 004225 512 K-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 512 ~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L 590 (767)
. +........+++|.|+.++.+++++++..++|++.+++...++....+.+.++++.++.++.+.+. .++..|++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L 258 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY--KVVSPALRAV 258 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCH--HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCch--hHHHHHHHHH
Confidence 6 565666668999999999999999999999999999999887778888888999999999999888 9999999999
Q ss_pred hhhhccCCcceeeh------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHH
Q 004225 591 RYIVKGDGFLTQCT------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEA 652 (767)
Q Consensus 591 ~~l~~~~~~~~~~l------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 652 (767)
++++.+.+...+.+ .++..|+++++|++.++++..+.+++.|+++.++.+++++++++|.+|
T Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a 338 (450)
T 2jdq_A 259 GNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338 (450)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 99998765433221 789999999999999989999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchH
Q 004225 653 ARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGF 732 (767)
Q Consensus 653 ~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 732 (767)
+|+|+|++..++++..+.+++.|+++.|++++++++++++..|+++|.+++...+....... ...++|...+.+.|++
T Consensus 339 ~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC--SCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc--cchhHHHHHHHHcCcH
Confidence 99999999876788888899999999999999999999999999999999987664322110 0346789999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCCcc
Q 004225 733 KKIEDLKRHDSNGICEKAVKILEIYWSCGVI 763 (767)
Q Consensus 733 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 763 (767)
+.|..+++++++++++.|..++++||+.++-
T Consensus 417 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 447 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDE 447 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 9999999999999999999999999987753
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=9.3e-35 Score=314.08 Aligned_cols=381 Identities=16% Similarity=0.169 Sum_probs=292.0
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc--CCC-hHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHH
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL--LPP-SEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNV 433 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~ 433 (767)
.+|.+++.|++++++++..|+..|++++ +++ ...+++.|+++.|+++|++++ ++++..|+++|++++. +++..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999999999999999999999 445 448889999999999999988 9999999999999997 78888
Q ss_pred HHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc--------cC-------CChHH
Q 004225 434 VIDGGAVPIFVKLLS-SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN--------KH-------AKPSM 497 (767)
Q Consensus 434 ~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--------~~-------~~~~~ 497 (767)
+++.|++|.|+++|. +++++++++|+|+|+|++.+ ++.+..+++ |+++.|++++. .. .+.++
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 999999999999999 78999999999999999988 778888888 99999999992 11 35678
Q ss_pred HHHHHHHHHhhcCCCCCCCccchh-chHHHHHHHhcC------CCHHHHHHHHHHHHhhccCChhH----HHHHH-----
Q 004225 498 LRNATKTLSRFCQGKPEPPFDQVR-PALPALAQLVHS------NDNDVLRYACEALSCLSDGTNDK----IQAVI----- 561 (767)
Q Consensus 498 ~~~~~~~L~~l~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~----~~~~~----- 561 (767)
++.|+|+|+|++.+++....+... |+++.|+.++++ .+.++++++++++.+++...+.. ...+.
T Consensus 160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 889999999999874333444444 999999999985 46678899999999997431100 00000
Q ss_pred ------hcCcHHHHHHHhc-----------CCCC-C--CcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCC
Q 004225 562 ------EADVCPRLVKLLL-----------HPLP-F--PFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGN 621 (767)
Q Consensus 562 ------~~~~~~~L~~lL~-----------~~~~-~--~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~ 621 (767)
..+.+.....-.. ..++ . .-+...++..+..+...... . .+++.|+|+|+|++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~--~--~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK--D--ATLEACAGALQNLTASK 315 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC--H--HHHHHHHHHHHHHTTCS
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC--H--HHHHHHHHHHHHhccCc
Confidence 0000000000000 0000 0 00111223333333322110 0 67888999999999864
Q ss_pred HH---HH-HHHH-HcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCC------HH
Q 004225 622 RE---QI-QVVI-DAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYAD------PE 690 (767)
Q Consensus 622 ~~---~~-~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~ 690 (767)
.. .. +.++ +.|++|.|++++.+++.+++++|+|+|.|++.+ . ....++..|++++|++++..++ ++
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence 32 22 3444 689999999999999999999999999999985 2 4456677789999999999764 36
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCC-ChHHHHHHHHHHHHhcCCCcc
Q 004225 691 IVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHD-SNGICEKAVKILEIYWSCGVI 763 (767)
Q Consensus 691 v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~~ 763 (767)
++..++++|.+++... ..++..+.+.|+++.|.+++.++ ++++++.|.++|++||.+.+.
T Consensus 393 v~~~~l~~l~ni~~~~-------------~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQ-------------PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHHHHHHHHTTC-------------THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred HHHHHHHHHHHHHhcC-------------HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhh
Confidence 8889999999998632 33677888999999999999999 999999999999999988765
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=8e-34 Score=311.87 Aligned_cols=344 Identities=24% Similarity=0.300 Sum_probs=305.2
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh----hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhH
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS----ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDR 473 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~ 473 (767)
-++.+++.+.+++ ++.|..|+..++++.+ ...+.+++.|++|.|+++|+. +++.+|..|+|+|+|+++++++.+
T Consensus 58 ~i~~~v~~l~s~d-~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 58 SVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 4788999999999 9999999999999987 346789999999999999976 568999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCC-CCccchhchHHHHHHHhcCCC-----HHHHHHHHHHHH
Q 004225 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPE-PPFDQVRPALPALAQLVHSND-----NDVLRYACEALS 547 (767)
Q Consensus 474 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~ 547 (767)
+.+++.|+++.|+.+| .+++.++++.|+|+|+|++.+.+. +......|+++.|+.++...+ ..+++.++|++.
T Consensus 137 ~~vv~~GaIp~Lv~lL-~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 9999999999999999 899999999999999999988743 456667899999999998654 457889999999
Q ss_pred hhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeeh------------------hhhHH
Q 004225 548 CLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT------------------GIAKE 609 (767)
Q Consensus 548 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l------------------~v~~~ 609 (767)
+++.+...........+++|.|++++.+.+. +++..|+++|++++.++++..+.+ .++..
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 9998765433333335789999999999998 999999999999998776544333 78899
Q ss_pred HHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCH
Q 004225 610 ACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADP 689 (767)
Q Consensus 610 a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 689 (767)
|+++++|++.+++...+.+++.|+++.|+.++.+++..++++|+|+|+|++.+ +.++...+.+.|+++.|+.++.+++.
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~-~~~~~~~v~~~g~i~~Lv~lL~~~~~ 372 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADF 372 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSSCH
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHhcCCHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999987 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 690 EIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 690 ~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
+++..|+|+|.|++..++. +....+.+.|+++.|.+++.++++++...+.++|.+++.
T Consensus 373 ~v~~~Aa~aL~Nl~~~~~~------------~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 373 KTQKEAAWAITNYTSGGTV------------EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHHHHHHCCH------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCH------------HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999986433 236678899999999999999999999999999998864
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=9.3e-34 Score=315.97 Aligned_cols=357 Identities=15% Similarity=0.130 Sum_probs=306.4
Q ss_pred HHHHHhhhcCC--CHHHHHHHHHHHHHhc-CC-ChHHHH-hcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-h--h--
Q 004225 361 LPGMLAGVWSD--DSGLQLEATTWFRKLL-LP-PSEKVI-QSGVVARFVEFLTREDNPQLQLEAARALTNIAS-E--N-- 430 (767)
Q Consensus 361 i~~l~~~l~s~--~~~~~~~a~~~L~~l~-~~-~~~~i~-~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~--~-- 430 (767)
++.++++|.++ +++++..|+..|.+++ .+ ....++ +.|+++.|++++++++ +.++..|+++|.|++. . .
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q~~ 457 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEM 457 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhhhh
Confidence 67788888887 8999999999999999 33 355555 5799999999999988 8999999999999998 2 1
Q ss_pred ---------------------------h---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 004225 431 ---------------------------T---NVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEK 480 (767)
Q Consensus 431 ---------------------------~---~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g 480 (767)
+ +.+++.|++|.|+.+++++++.++++|+|+|+|++.+ ++++..+++.|
T Consensus 458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~G 536 (810)
T 3now_A 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEG 536 (810)
T ss_dssp CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTT
T ss_pred hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCC
Confidence 1 6788999999999999999999999999999999964 67999999999
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCCc--cchhchHHHHHHHhcCCC-HHHHHHHHHHHHhhccCChhH
Q 004225 481 ALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPF--DQVRPALPALAQLVHSND-NDVLRYACEALSCLSDGTNDK 556 (767)
Q Consensus 481 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~~--~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~ 556 (767)
++++|+.++ .++++..++.|+|+|++++... +...+ ....+++|.|+.++.++. ...+..++|+|.|++..+++.
T Consensus 537 aip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~ 615 (810)
T 3now_A 537 GVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV 615 (810)
T ss_dssp HHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999 7888999999999999998764 22111 123579999999998653 445678999999999998888
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHH-cCCHH
Q 004225 557 IQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVID-AGVIG 635 (767)
Q Consensus 557 ~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~i~ 635 (767)
.+.+++.|+++.|+.++.+.+. .+++.|+++++|++.+.. .+..+++ .|.++
T Consensus 616 ~~~Ii~aG~l~~Lv~LL~s~~~--------------------------~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~ 668 (810)
T 3now_A 616 RQRIIKEQGVSKIEYYLMEDHL--------------------------YLTRAAAQCLCNLVMSED-VIKMFEGNNDRVK 668 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSCCT--------------------------THHHHHHHHHHHHTTSHH-HHHHHHSSSSHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCH--------------------------HHHHHHHHHHHHHhCChH-HHHHHHhccCcHH
Confidence 8889999999999999999988 677778888888877544 4455554 78999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 004225 636 PLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR-KGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGT 714 (767)
Q Consensus 636 ~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~ 714 (767)
.|+.++.+.+..+|++|+|+|+|++.+ ++..++.+++ .|++++|++++.+++.++++.|+|+|.|+....
T Consensus 669 ~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s-------- 739 (810)
T 3now_A 669 FLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG-------- 739 (810)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999986 6788899998 899999999999999999999999999999732
Q ss_pred ccccccHHHHHHHhhchHHHHHHHhcCC---ChHHHHHHHHHHHHhcCCC
Q 004225 715 ANRYFNHYARLVEAAEGFKKIEDLKRHD---SNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 715 ~~~~~~~~~~~l~~~g~~~~l~~l~~~~---~~~v~~~a~~~l~~~~~~~ 761 (767)
......+.++|+++.|.+++... ++++++.|.++|+.+....
T Consensus 740 -----~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 740 -----EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp -----HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 22578888999999999997554 7999999999999886543
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=295.01 Aligned_cols=364 Identities=15% Similarity=0.109 Sum_probs=283.8
Q ss_pred HHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc-CCCh-HHHHhcCchHHHHhhccCCCC-----------HHHHHHHHH
Q 004225 355 IQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL-LPPS-EKVIQSGVVARFVEFLTREDN-----------PQLQLEAAR 421 (767)
Q Consensus 355 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~-~~i~~~g~i~~L~~ll~~~~~-----------~~~~~~a~~ 421 (767)
..+++.++.++..+.+.++.. ..+.|..+. +++. ..+++.|++|.|+++|+..+. ++++.+|+|
T Consensus 28 ~~~~~~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~ 104 (458)
T 3nmz_A 28 GTKVEMVYSLLSMLGTHDKDD---MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104 (458)
T ss_dssp -----------------CCHH---HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcCCCHHH---HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHH
Confidence 445567899999998887773 555555555 5554 778899999999999997543 799999999
Q ss_pred HHHHHHh---hhhHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHHhcCCchhHH
Q 004225 422 ALTNIAS---ENTNVVIDGGAV----------PIFVKLLSSPS--DD-----VRE-------KAVWALGNIARSSPRDRD 474 (767)
Q Consensus 422 ~L~~l~~---~~~~~~~~~~~l----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~~~ 474 (767)
+|.|++. +......+.+++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +++|+
T Consensus 105 al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~ 183 (458)
T 3nmz_A 105 ALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRH 183 (458)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHH
Confidence 9999999 556666666666 66777777642 22 544 999999999865 88999
Q ss_pred HHHhcCCHHHHHHHHcc----------CCChHHHHHHHHHHHhhcCCCCCCCccc--hhchHHHHHHHhcCCCHHHHHHH
Q 004225 475 LVLSEKALIPLLAQLNK----------HAKPSMLRNATKTLSRFCQGKPEPPFDQ--VRPALPALAQLVHSNDNDVLRYA 542 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~----------~~~~~~~~~~~~~L~~l~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~v~~~a 542 (767)
.+++.|++++|+.++.. +.++.+++.|+|+|.|++.+++..+... ..|++|.|+.++.+++++++..+
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A 263 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 263 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999931 1346789999999999998874333332 46779999999999999999999
Q ss_pred HHHHHhhccC-ChhHHHHHHhcCcHHHHHHHh-cCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccC
Q 004225 543 CEALSCLSDG-TNDKIQAVIEADVCPRLVKLL-LHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAG 620 (767)
Q Consensus 543 ~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL-~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~ 620 (767)
+|+|.|++.. +++....+.+.|+++.|+++| .+.+. .+++.|+.+++|++..
T Consensus 264 ~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~--------------------------~v~~~A~~aL~nLs~~ 317 (458)
T 3nmz_A 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE--------------------------STLKSVLSALWNLSAH 317 (458)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSH--------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCH--------------------------HHHHHHHHHHHHHccC
Confidence 9999999985 566778888999999999975 55565 6777788888888875
Q ss_pred CHHHHHHHH-HcCCHHHHHHHHhcCCc----hhHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhhhcCCCHHHHH
Q 004225 621 NREQIQVVI-DAGVIGPLVDLLQNAEF----FTKKEAARAISNAISG--GTHEQIKYLVRKGCIKPLCDLLLYADPEIVT 693 (767)
Q Consensus 621 ~~~~~~~~~-~~~~i~~L~~ll~~~~~----~v~~~a~~~L~nl~~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 693 (767)
+++....+. ..|+++.|++++.+.+. +++.+|+|+|.|++.. ++++..+.+.+.|+++.|+.++.+++.++++
T Consensus 318 ~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~ 397 (458)
T 3nmz_A 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 397 (458)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHH
T ss_pred CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHH
Confidence 555555666 78999999999998765 4999999999999961 3688889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 004225 694 ICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 694 ~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 761 (767)
.|+|+|.+++... ...+..+.+.|+++.|.+++.+.++++++.|.++|.++....
T Consensus 398 ~A~~aL~nLa~~~-------------~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 398 NACGTLWNLSARN-------------PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHHSSC-------------HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC-------------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999998521 223667789999999999999999999999999999997653
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.3e-32 Score=304.28 Aligned_cols=344 Identities=24% Similarity=0.299 Sum_probs=305.7
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh----hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhH
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS----ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDR 473 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~ 473 (767)
.++.+++.+.+++ ++.+..|+..++++.+ ...+.+++.|++|.|+++|.. +++.++..|+|+|+|++.++++.+
T Consensus 77 ~l~~lv~~l~s~d-~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 77 SVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4788899999999 9999999999999887 346789999999999999975 669999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCCC-----HHHHHHHHHHHH
Q 004225 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSND-----NDVLRYACEALS 547 (767)
Q Consensus 474 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~ 547 (767)
..+++.|+++.|+.++ .+++.++++.|+|+|+|++.++ ..+..+...|+++.|+.++...+ ..+++.++|++.
T Consensus 156 ~~vv~~Gaip~Lv~LL-~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 9999999999999999 8999999999999999999887 34456667899999999998654 457889999999
Q ss_pred hhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeeh------------------hhhHH
Q 004225 548 CLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT------------------GIAKE 609 (767)
Q Consensus 548 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l------------------~v~~~ 609 (767)
+++.+...........+++|.|++++.+.+. +++..|+|+|++++.+.++..+.+ .++..
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 312 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 312 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH--HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcH--HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence 9998765443333335789999999999998 999999999999998776544433 78899
Q ss_pred HHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCH
Q 004225 610 ACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADP 689 (767)
Q Consensus 610 a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 689 (767)
|+++++|++.+++.....+++.|+++.|+.++.+++..++.+|+|+|+|++.+ +++....+++.|+++.|+.++.+++.
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~ 391 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADF 391 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-cHHHHHHHHhcCcHHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999987 78889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 690 EIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 690 ~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
+++..|+|+|.|++..++. +....+.+.|+++.|.+++.++++++...+.++|.+++.
T Consensus 392 ~v~~~A~~aL~nl~~~~~~------------~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 392 KTQKAAAWAITNYTSGGTV------------EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHHHHHHHSCH------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCH------------HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999976432 235678899999999999999999999999999998864
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-32 Score=305.03 Aligned_cols=385 Identities=16% Similarity=0.159 Sum_probs=320.4
Q ss_pred HHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc-CC-ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh----
Q 004225 355 IQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL-LP-PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---- 428 (767)
Q Consensus 355 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---- 428 (767)
...-|.+|.++.++.++++.++..|+.++.+.+ .+ .++.+++.|+ +.|..++++++ +.++..|+++|.+++.
T Consensus 286 ~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 286 VAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp HHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTT
T ss_pred HhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhcccccc
Confidence 334578999999999999999999999999988 33 3555667775 99999999888 8999999999999985
Q ss_pred hhhHHHHhCCC----hHHHHHhhCCC--CHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHH
Q 004225 429 ENTNVVIDGGA----VPIFVKLLSSP--SDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNAT 502 (767)
Q Consensus 429 ~~~~~~~~~~~----l~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~ 502 (767)
+.....++.|. ++.++++|.++ |++++..|+|+|.+++.+.....+...+.|+++.|+.++ .++++.++..|+
T Consensus 364 d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al 442 (810)
T 3now_A 364 DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVV 442 (810)
T ss_dssp TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHH
T ss_pred CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHH
Confidence 22223344443 66788888887 899999999999999976544444444689999999999 788999999999
Q ss_pred HHHHhhcCCCCCC---------------------------------CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 004225 503 KTLSRFCQGKPEP---------------------------------PFDQVRPALPALAQLVHSNDNDVLRYACEALSCL 549 (767)
Q Consensus 503 ~~L~~l~~~~~~~---------------------------------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 549 (767)
|+|.|++.+.+.. +.+...|++|.|+.++.++++++++.|+|+|.|+
T Consensus 443 ~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NL 522 (810)
T 3now_A 443 TTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV 522 (810)
T ss_dssp HHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999854211 2234569999999999999999999999999999
Q ss_pred ccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC-cce-------eeh-------------hhhH
Q 004225 550 SDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG-FLT-------QCT-------------GIAK 608 (767)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~-~~~-------~~l-------------~v~~ 608 (767)
+.. ++....+++.|++|.|+.++.+.+. ..+..|.++|++++.+.+ ... ..+ ..+.
T Consensus 523 A~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~--~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~ 599 (810)
T 3now_A 523 CGL-KELRGKVVQEGGVKALLRMALEGTE--KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF 599 (810)
T ss_dssp HTS-HHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHH
T ss_pred cCC-HHHHHHHHHCCCHHHHHHHHccCCH--HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHH
Confidence 954 5688889999999999999999988 999999999999985432 110 011 2246
Q ss_pred HHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhhhcCC
Q 004225 609 EACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR-KGCIKPLCDLLLYA 687 (767)
Q Consensus 609 ~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~-~~~i~~L~~ll~~~ 687 (767)
+|+++|+|++..+++..+.+++.|+++.|+.++.+.++.+++.|+++|+|++.+ ++....+.+ .|.++.|+.++.++
T Consensus 600 eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~ 677 (810)
T 3now_A 600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDE 677 (810)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCC
Confidence 899999999999899999999999999999999999999999999999999985 566666665 68999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHh-hchHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 004225 688 DPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEA-AEGFKKIEDLKRHDSNGICEKAVKILEIYWSC 760 (767)
Q Consensus 688 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 760 (767)
+..++..|+|+|.++....+. ..+.+.+ .|+++.|.+++.+++.++++.|.+++.++..+
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~-------------~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 678 DEETATACAGALAIITSVSVK-------------CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHH-------------HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhCCCHH-------------HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999974221 2334445 89999999999999999999999999998654
No 12
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=3.4e-31 Score=295.27 Aligned_cols=387 Identities=17% Similarity=0.164 Sum_probs=322.2
Q ss_pred chHHHHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc--CC-ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 004225 351 LNTTIQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL--LP-PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIA 427 (767)
Q Consensus 351 ~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 427 (767)
.+......|.+|.+++.++++++.++..|+..|.+++ .+ ....+.+.|+++.|++++++++ +.++..++.+|.+++
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHH
Confidence 4445666789999999999999999999999999999 33 3566678999999999999988 899999999999999
Q ss_pred h---hhhHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHH
Q 004225 428 S---ENTNVVIDGGAVPIFVKLLSSP-SDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATK 503 (767)
Q Consensus 428 ~---~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~ 503 (767)
. +.+..+.+.|+++.|+.++++. +...+..++.+|.+++. .+..+..+.+.|+++.++.++ .++++++++.++|
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLW 249 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHH
Confidence 7 6788888999999999999874 46677788999999996 466888899999999999999 7779999999999
Q ss_pred HHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCccc
Q 004225 504 TLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGL 583 (767)
Q Consensus 504 ~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~ 583 (767)
++.+++...+.. ....+++|.|+.++.+++++++..++|+|.+++..+++....+.+.++++.+++++.+.+...+++
T Consensus 250 ~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 250 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 999999876432 345689999999999999999999999999999988888888999999999999998633212899
Q ss_pred chHHHHHhhhhccCCcce---eeh-------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHH
Q 004225 584 TPPLWTVRYIVKGDGFLT---QCT-------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLL 641 (767)
Q Consensus 584 ~~a~~~L~~l~~~~~~~~---~~l-------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll 641 (767)
..|+++|+|++.+++... ..+ .+++.++|+++|++.+... .+.+++.|+++.|++++
T Consensus 328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll 406 (529)
T 1jdh_A 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLL 406 (529)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHH
Confidence 999999999987643210 000 6889999999999986544 46788999999999999
Q ss_pred hcCCchhHHHHHHHHHH--hhcCC------------------CHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHH
Q 004225 642 QNAEFFTKKEAARAISN--AISGG------------------THEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLEN 701 (767)
Q Consensus 642 ~~~~~~v~~~a~~~L~n--l~~~~------------------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~ 701 (767)
++.++++|++|+|+++| +..++ +++....+.+.|+++.|+.++.+++++++..|.++|.+
T Consensus 407 ~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~ 486 (529)
T 1jdh_A 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486 (529)
T ss_dssp HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHH
Confidence 99888898888887776 22221 34555678899999999999999999999999999999
Q ss_pred HHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 702 ILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 702 l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
+... +.++..+.+.|+++.|.+++++++++|++.|.++|.++
T Consensus 487 l~~~--------------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 487 LAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HTTS--------------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HhcC--------------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 8742 23577889999999999999999999999999999875
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=296.09 Aligned_cols=385 Identities=17% Similarity=0.158 Sum_probs=323.7
Q ss_pred chHHHHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc--C-CChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 004225 351 LNTTIQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL--L-PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIA 427 (767)
Q Consensus 351 ~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 427 (767)
.+......+.+|.+++.++++++.++..|+.+|.+++ . .....+++.|+++.|++++++++ +.++..++.+|.+++
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHH
Confidence 4455666788999999999999999999999999999 3 34566778999999999999988 888888999999999
Q ss_pred h---hhhHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHH
Q 004225 428 S---ENTNVVIDGGAVPIFVKLLSSP-SDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATK 503 (767)
Q Consensus 428 ~---~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~ 503 (767)
. +.+..+.+.|+++.|+.++++. ...++..++.+|.+++. .+..+..+++.|+++.++.++ .+.+..+++.++|
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLW 246 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHH
Confidence 6 7788899999999999999885 47788999999999996 467888999999999999999 7789999999999
Q ss_pred HHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCccc
Q 004225 504 TLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGL 583 (767)
Q Consensus 504 ~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~ 583 (767)
+|.+++...+. .....++++.|+.++.+.+.+++..++|+|.+++...+...+.+.+.++++.|+.++.+.+...+++
T Consensus 247 ~L~nL~~~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 247 TLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHGGGCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhcchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 99999987633 2445689999999999999999999999999999988888888889999999999998743112899
Q ss_pred chHHHHHhhhhccCCc--ceee-------h-------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHH
Q 004225 584 TPPLWTVRYIVKGDGF--LTQC-------T-------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLL 641 (767)
Q Consensus 584 ~~a~~~L~~l~~~~~~--~~~~-------l-------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll 641 (767)
..|+++|++++...+. ..+. + .++++|+|+++|++.+.... +.+++.|+++.|++++
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999865332 1111 0 68999999999999875544 7888999999999999
Q ss_pred hcCCch----------------------hHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHH
Q 004225 642 QNAEFF----------------------TKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGL 699 (767)
Q Consensus 642 ~~~~~~----------------------v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL 699 (767)
...+++ ++..|+.+|.+++.. ......+.+.|+++.|++++.+++++++..|+++|
T Consensus 404 ~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 481 (644)
T 2z6h_A 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 481 (644)
T ss_dssp HHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC--HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 875544 455566666666653 45556778899999999999999999999999999
Q ss_pred HHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 700 ENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 700 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
.++... ++++..+.+.|+++.|.+++++++++|+..|.++|.++
T Consensus 482 ~~l~~~--------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l 525 (644)
T 2z6h_A 482 CELAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525 (644)
T ss_dssp HHHHTS--------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHcC--------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999842 23578899999999999999999999977655555444
No 14
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.98 E-value=2.2e-31 Score=281.51 Aligned_cols=330 Identities=15% Similarity=0.152 Sum_probs=275.0
Q ss_pred hHHHHhhcCHHHHHhhhcCC------------CHHHHHHHHHHHHHhc--CC-ChHHHHhcCch----------HHHHhh
Q 004225 352 NTTIQKLVSLPGMLAGVWSD------------DSGLQLEATTWFRKLL--LP-PSEKVIQSGVV----------ARFVEF 406 (767)
Q Consensus 352 ~~~~~~~~~i~~l~~~l~s~------------~~~~~~~a~~~L~~l~--~~-~~~~i~~~g~i----------~~L~~l 406 (767)
.....+.|.+|.+++.|+.+ +++.+..|+++|.+++ .+ ......+.|++ +.++++
T Consensus 63 ~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (458)
T 3nmz_A 63 CISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEW 142 (458)
T ss_dssp HHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 35567789999999999863 3799999999999999 44 35555666777 556666
Q ss_pred ccCCC-CHH-----HHH-------HHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHH
Q 004225 407 LTRED-NPQ-----LQL-------EAARALTNIAS--ENTNVVIDGGAVPIFVKLLSS-----------PSDDVREKAVW 460 (767)
Q Consensus 407 l~~~~-~~~-----~~~-------~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~-----------~~~~v~~~a~~ 460 (767)
+.+.. ..+ ++. +|+|+|.|++. ++|+.+++.|+++.|+.+|.. .++.++.+|+|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~ 222 (458)
T 3nmz_A 143 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222 (458)
T ss_dssp HTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHH
Confidence 66542 112 333 89999999988 899999999999999999941 34779999999
Q ss_pred HHHHHhcCCchhHHHHH-hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCC-C-CCCCccchhchHHHHHHHh-cCCCH
Q 004225 461 ALGNIARSSPRDRDLVL-SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG-K-PEPPFDQVRPALPALAQLV-HSNDN 536 (767)
Q Consensus 461 ~L~nl~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~-~-~~~~~~~~~~~i~~L~~ll-~~~~~ 536 (767)
+|.|++.+++..+..+. ..|+++.|+.+| .++++++++.++|+|+|++.. + ..+..+...|++|.|+.++ .+.+.
T Consensus 223 aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~ 301 (458)
T 3nmz_A 223 ALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 301 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSH
T ss_pred HHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCH
Confidence 99999988777776665 456799999999 789999999999999999985 3 3445566689999999975 56789
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHH-hcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHh
Q 004225 537 DVLRYACEALSCLSDGTNDKIQAVI-EADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTIS 615 (767)
Q Consensus 537 ~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~ 615 (767)
++++.++.+|.||+.+.++....+. ..|+++.|+++|.+.+. . +.+++++.|+|+|.
T Consensus 302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~--~--------------------~~~~v~~~A~~aL~ 359 (458)
T 3nmz_A 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ--T--------------------NTLAIIESGGGILR 359 (458)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCS--S--------------------STTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCC--c--------------------chHHHHHHHHHHHH
Confidence 9999999999999985555555565 78999999999998765 1 00037788888888
Q ss_pred hhcc---CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHH
Q 004225 616 NITA---GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIV 692 (767)
Q Consensus 616 nl~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 692 (767)
|++. ++++.++.+++.|+++.|+.+|++++..++++|+|+|+|++.. +++....+.+.|++++|+++++++++.++
T Consensus 360 nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~ 438 (458)
T 3nmz_A 360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIA 438 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHH
T ss_pred HHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 8886 7889999999999999999999999999999999999999976 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 004225 693 TICLKGLENILKV 705 (767)
Q Consensus 693 ~~al~aL~~l~~~ 705 (767)
+.|+++|.+++..
T Consensus 439 ~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 439 MGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999974
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.98 E-value=4.9e-31 Score=284.61 Aligned_cols=352 Identities=18% Similarity=0.162 Sum_probs=290.2
Q ss_pred HHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC-
Q 004225 393 KVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARS- 468 (767)
Q Consensus 393 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~- 468 (767)
.-++.+.++.|+++|.+++ ++++..|+++|.+++. +++..+++.|++|.|+++|.+++++++++|+|+|.|++.+
T Consensus 43 ~~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred CCcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 3356788999999999988 9999999999999997 7888999999999999999999999999999999999985
Q ss_pred CchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc----------------
Q 004225 469 SPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH---------------- 532 (767)
Q Consensus 469 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~---------------- 532 (767)
+++.+..+++.|+|+.|+.+|....+.++++.++++|+|++..+.....+ ..+++|.|+.++.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I-~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI-VDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHH-HHHTHHHHHHHTHHHHHCCC---------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHH-HhccHHHHHHHHhcccccccccccccccc
Confidence 68899999999999999999954578899999999999999865443333 3678999999871
Q ss_pred --CCCHHHHHHHHHHHHhhccCChhHHHHHHhc-CcHHHHHHHhcCC----CCCCcccchHHHHHhhhhccCC----c--
Q 004225 533 --SNDNDVLRYACEALSCLSDGTNDKIQAVIEA-DVCPRLVKLLLHP----LPFPFGLTPPLWTVRYIVKGDG----F-- 599 (767)
Q Consensus 533 --~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~----~~~~~v~~~a~~~L~~l~~~~~----~-- 599 (767)
..+.+++++++++|.||+..+++..+.+.+. |+++.|+.++++. +.....+.+|+++|.|++.... .
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 2357999999999999999887777777774 6678999999742 2222789999999999985410 0
Q ss_pred -------------------cee-------------------ehhhhHHHHHHHhhhccCCH---HHHH-HHHHcCCHHHH
Q 004225 600 -------------------LTQ-------------------CTGIAKEACRTISNITAGNR---EQIQ-VVIDAGVIGPL 637 (767)
Q Consensus 600 -------------------~~~-------------------~l~v~~~a~~~l~nl~~~~~---~~~~-~~~~~~~i~~L 637 (767)
..+ ...+++.|+++|.|++.+.. ...+ .+.+.++++.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 000 00778999999999998652 2223 34457889999
Q ss_pred HHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC--------CHHHHHHHHHHHHHHHHhhhhh
Q 004225 638 VDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA--------DPEIVTICLKGLENILKVGEAE 709 (767)
Q Consensus 638 ~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~al~aL~~l~~~~~~~ 709 (767)
+++|.+++..+++.|+|+|.|++.+.. . +.++..|+++.|+.+|.++ ..+++..|+++|.|++....
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~--~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~-- 435 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDAR--N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL-- 435 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCS--C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChh--H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH--
Confidence 999999999999999999999998642 2 2355789999999999876 46889999999999996422
Q ss_pred hccCCccccccHHHHHHHhhchHHHHHHHhcCC--ChHHHHHHHHHHHHhcCCCc
Q 004225 710 MNTGTANRYFNHYARLVEAAEGFKKIEDLKRHD--SNGICEKAVKILEIYWSCGV 762 (767)
Q Consensus 710 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~~ 762 (767)
..+..+.+.|+++.|.+++.+. .+.+++.|.++|.++|...+
T Consensus 436 -----------~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 436 -----------EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp -----------HHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred -----------HHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 2366777999999999999886 88999999999999987653
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.98 E-value=9.5e-31 Score=290.81 Aligned_cols=344 Identities=25% Similarity=0.302 Sum_probs=305.0
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHh----hhhHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHHhcCCchh
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIAS----ENTNVVIDGGAVPIFVKLLSSPS-DDVREKAVWALGNIARSSPRD 472 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~ 472 (767)
..++.+++.+.+++ ++++..|+++|++++. .....+++.|++|.|+++|.+++ +.++..|+|+|++++.++++.
T Consensus 74 ~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 74 ESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp -CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 45899999999888 9999999999999987 34778889999999999999976 999999999999999998999
Q ss_pred HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC-CCCccchhchHHHHHHHh-cCCCHHHHHHHHHHHHhhc
Q 004225 473 RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP-EPPFDQVRPALPALAQLV-HSNDNDVLRYACEALSCLS 550 (767)
Q Consensus 473 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~ 550 (767)
+..+++.|+++.|+.++ .++++.+++.|+|+|++++.+.+ ........++++.|+.++ .+.+..++..++|+|.+++
T Consensus 153 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 78899999999999999998763 344555678999999999 6778999999999999999
Q ss_pred cCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeeh------------------hhhHHHHH
Q 004225 551 DGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT------------------GIAKEACR 612 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l------------------~v~~~a~~ 612 (767)
...+.... ....++++.|+.++.+.+. +++..|+++|++++.+.+...+.+ .++..|++
T Consensus 232 ~~~~~~~~-~~~~~~l~~L~~lL~~~~~--~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~ 308 (528)
T 4b8j_A 232 RGKPQPSF-EQTRPALPALARLIHSNDE--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308 (528)
T ss_dssp CSSSCCCH-HHHTTHHHHHHHHTTCCCH--HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred cCCCCCcH-HHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHH
Confidence 87533222 3346899999999999998 999999999999997765443222 78999999
Q ss_pred HHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC-CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHH
Q 004225 613 TISNITAGNREQIQVVIDAGVIGPLVDLLQNA-EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEI 691 (767)
Q Consensus 613 ~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 691 (767)
+|+|++.+++...+.+++.|+++.|+.++.++ ++.++.+|+|+|+|++.+ +++.+..+++.|+++.|+.++.++++++
T Consensus 309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v 387 (528)
T 4b8j_A 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDI 387 (528)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999998 899999999999999986 7888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 692 VTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 692 ~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
+..|+|+|.+++..+.. .....+.+.|+++.|..++.+++++++..|.++|.+++.
T Consensus 388 ~~~a~~aL~nl~~~~~~------------~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSH------------DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHHHHHSCH------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCH------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999986322 246667789999999999999999999999999998864
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=2.5e-30 Score=287.28 Aligned_cols=350 Identities=26% Similarity=0.306 Sum_probs=305.7
Q ss_pred hcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh----hhhHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCc
Q 004225 396 QSGVVARFVEFLTREDNPQLQLEAARALTNIAS----ENTNVVIDGGAVPIFVKLLSSP-SDDVREKAVWALGNIARSSP 470 (767)
Q Consensus 396 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~ 470 (767)
..+.++.+++.+.+++ ++++..|+++|++++. .....+++.|++|.|+++|.++ ++.++..|+|+|++++.+++
T Consensus 85 ~~~~i~~lv~~L~s~~-~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp --CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 3467999999999988 9999999999999977 3456788999999999999997 89999999999999999888
Q ss_pred hhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 004225 471 RDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCL 549 (767)
Q Consensus 471 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 549 (767)
+.++.+++.|+++.++.++ .++++.+++.|+|+|++++... .........++++.|+.++.+.+..++..++|+|.++
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 8889999999999999999 6789999999999999999875 3344556679999999999999999999999999999
Q ss_pred ccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeeh------------------hhhHHHH
Q 004225 550 SDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT------------------GIAKEAC 611 (767)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l------------------~v~~~a~ 611 (767)
+.+...........++++.++.++.+.+. .++..|+++|++++.+.+...+.+ .++..|+
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~ 320 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDT--ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 320 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCH--HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHH
Confidence 97753222334457899999999999988 999999999999997654322211 7899999
Q ss_pred HHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHH
Q 004225 612 RTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEI 691 (767)
Q Consensus 612 ~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 691 (767)
+++++++.+++...+.+++.|+++.|+.++.++++.++..|+|+|++++.+ +++.++.+++.|+++.|+.++.++++++
T Consensus 321 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v 399 (530)
T 1wa5_B 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKT 399 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999999999899899999999999999999999999999999999999986 6788888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 004225 692 VTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSC 760 (767)
Q Consensus 692 ~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 760 (767)
+..|+|+|.+++..+... ......+.+.|+++.|..++.+++++++..|.++|.+++..
T Consensus 400 ~~~a~~aL~~l~~~~~~~----------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 400 KKEACWAISNASSGGLQR----------PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHHHHHHHTTTC----------THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCc----------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999864320 02455667899999999999999999999999999988753
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=7.6e-31 Score=283.11 Aligned_cols=339 Identities=19% Similarity=0.179 Sum_probs=281.2
Q ss_pred cCHHHHHhhhcCCCHHHHHHHHHHHHHhc---CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh----hhh
Q 004225 359 VSLPGMLAGVWSDDSGLQLEATTWFRKLL---LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS----ENT 431 (767)
Q Consensus 359 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~ 431 (767)
+.+|.+++.|.++++.++..|+.+|++++ ......+++.|+|+.|+++|++++ ++++..|+++|++++. +++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHH
Confidence 47999999999999999999999999999 344677889999999999999998 9999999999999996 688
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-----------------cCC
Q 004225 432 NVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-----------------KHA 493 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-----------------~~~ 493 (767)
..+++.|++|.|+++|.+ .+.+++++|+++|+|++.. ++.+..+++ ++++.|++++. ...
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence 899999999999999997 6889999999999999974 677777775 57999999871 234
Q ss_pred ChHHHHHHHHHHHhhcCCCCC-CCccc-hhchHHHHHHHhcC------CCHHHHHHHHHHHHhhccCChhH---------
Q 004225 494 KPSMLRNATKTLSRFCQGKPE-PPFDQ-VRPALPALAQLVHS------NDNDVLRYACEALSCLSDGTNDK--------- 556 (767)
Q Consensus 494 ~~~~~~~~~~~L~~l~~~~~~-~~~~~-~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~--------- 556 (767)
+.+++++|+++|.|++..++. ++.+. ..|+++.|+.++++ .+...+++|+|+|.||+......
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 689999999999999988743 33333 36788899999874 56789999999999999662111
Q ss_pred ----------------HHHHHhcCcHHHHHHHhcC-CCCCCcccchHHHHHhhhhccCCccee----eh-----------
Q 004225 557 ----------------IQAVIEADVCPRLVKLLLH-PLPFPFGLTPPLWTVRYIVKGDGFLTQ----CT----------- 604 (767)
Q Consensus 557 ----------------~~~~~~~~~~~~L~~lL~~-~~~~~~v~~~a~~~L~~l~~~~~~~~~----~l----------- 604 (767)
.+.+.+.++++.++.++.+ .+. .++.+|+++|.|++.+...... .+
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~--~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP--AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCH--HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 1112233456788999964 455 8999999999999876532111 11
Q ss_pred -------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--------CchhHHHHHHHHHHhhcCCCHHHHH
Q 004225 605 -------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA--------EFFTKKEAARAISNAISGGTHEQIK 669 (767)
Q Consensus 605 -------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~~~v~~~a~~~L~nl~~~~~~~~~~ 669 (767)
.+++.|+|+|+|++.+.. .+.++..|+++.|+++|.++ +.+++..|+++|.|++.. +++..+
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 889999999999999653 23455889999999999976 357889999999999987 789999
Q ss_pred HHHHcCChHHHHhhhcCC--CHHHHHHHHHHHHHHHHh
Q 004225 670 YLVRKGCIKPLCDLLLYA--DPEIVTICLKGLENILKV 705 (767)
Q Consensus 670 ~l~~~~~i~~L~~ll~~~--~~~v~~~al~aL~~l~~~ 705 (767)
.+.+.|+++.|+.+++++ .+.+++.|.++|.+++..
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 999999999999999986 889999999999999854
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=7.8e-29 Score=285.16 Aligned_cols=388 Identities=16% Similarity=0.150 Sum_probs=328.1
Q ss_pred hHHHHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc--CCC-hHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh
Q 004225 352 NTTIQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL--LPP-SEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS 428 (767)
Q Consensus 352 ~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 428 (767)
...+...+.+|.+++.++++++.++..|+.+|.+++ ... ...+.+.|+++.|++++.+++ ..++..|+.+|.+++.
T Consensus 227 ~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 227 LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhc
Confidence 344556688999999999999999999999999999 344 556668999999999999987 8999999999999986
Q ss_pred ---hhhHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHH
Q 004225 429 ---ENTNVVIDGGAVPIFVKLLSSPS-DDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKT 504 (767)
Q Consensus 429 ---~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~ 504 (767)
+.+..+.+.|+++.|+.++++.+ ...+..++.++.+++.. +..+..+++.|+++.|+.++ .+.+..+++.++|+
T Consensus 306 ~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 306 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWT 383 (780)
T ss_dssp TCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHH
Confidence 67888889999999999999855 55677889999999964 66788899999999999999 77889999999999
Q ss_pred HHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccc
Q 004225 505 LSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLT 584 (767)
Q Consensus 505 L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~ 584 (767)
|.+++...+. .....++++.|+.++.+.+.+++..++++|.+++...++....+.+.++++.|++++.+.+..++++.
T Consensus 384 L~~L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~ 461 (780)
T 2z6g_A 384 LRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 461 (780)
T ss_dssp HHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHH
Confidence 9999987633 33457899999999999999999999999999999988888889999999999999987432227999
Q ss_pred hHHHHHhhhhccCCcce----e-----eh-------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh
Q 004225 585 PPLWTVRYIVKGDGFLT----Q-----CT-------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ 642 (767)
Q Consensus 585 ~a~~~L~~l~~~~~~~~----~-----~l-------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~ 642 (767)
.|+++|++++....+.. . .+ .++++|+|+|+|++.+. .....+.+.|+++.|++++.
T Consensus 462 ~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 462 PAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp HHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHH
Confidence 99999999986543310 0 00 68899999999999864 44578889999999999998
Q ss_pred cCCc----------------------hhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHH
Q 004225 643 NAEF----------------------FTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLE 700 (767)
Q Consensus 643 ~~~~----------------------~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~ 700 (767)
+.++ +++..++.+|++++. +++....+.+.|+++.|+.++.++++.++..|+.+|.
T Consensus 541 ~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 618 (780)
T 2z6g_A 541 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 618 (780)
T ss_dssp HHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred hcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7543 355667777777775 4666677889999999999999999999999999999
Q ss_pred HHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 004225 701 NILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 701 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 761 (767)
++... +.++..+.+.|+++.|.+++++++++|++.|.++|.++....
T Consensus 619 ~L~~~--------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 619 ELAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HHHTS--------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHhcC--------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99742 336788999999999999999999999999888888876544
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=8.9e-29 Score=275.67 Aligned_cols=381 Identities=17% Similarity=0.150 Sum_probs=315.9
Q ss_pred hcCHHHHHhhhcCCCHHHHHHHHHHHHHhc-C-CChHHHHh-cCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhH
Q 004225 358 LVSLPGMLAGVWSDDSGLQLEATTWFRKLL-L-PPSEKVIQ-SGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTN 432 (767)
Q Consensus 358 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~-~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~ 432 (767)
.+.+|.+++.++++++.++..|+..|.+++ . .....++. .|+++.|++++.++++++++..|+.+|.+++. +++.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 367999999999999999999999999999 3 23445554 48999999999865348999999999999998 7788
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
.+.+.|++|.|+++|+++++.++..|+++|++++.+++..++.+.+.|+++.+++++ .+++.+++..++.++.+++..+
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999988777888888999999999999 7888999999999999999865
Q ss_pred -CCCCccchhchHHHHHHHhcCCC-HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHH
Q 004225 513 -PEPPFDQVRPALPALAQLVHSND-NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 513 -~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L 590 (767)
.....+...++++.++.++++.+ ...+..++.++.+++... +....+.+.|+++.++.++.+.+. +++..+++++
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll~~~~~--~~~~~a~~~L 251 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ--RLVQNCLWTL 251 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSSCH--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhCCCh--HHHHHHHHHH
Confidence 33444556789999999998655 566777899999999754 456668888999999999999988 9999999999
Q ss_pred hhhhccCCccee---------------ehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--CchhHHHHH
Q 004225 591 RYIVKGDGFLTQ---------------CTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA--EFFTKKEAA 653 (767)
Q Consensus 591 ~~l~~~~~~~~~---------------~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~ 653 (767)
.+++...+.... .-+++..|++++++++.++++.++.+.+.|+++.|++++.+. ++.++..|+
T Consensus 252 ~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~ 331 (529)
T 1jdh_A 252 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp HHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHH
Confidence 999976433211 017899999999999999899999999999999999999863 379999999
Q ss_pred HHHHHhhcCCC--HHHHHHHHHcCChHHHHhhhcCCC-HHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhc
Q 004225 654 RAISNAISGGT--HEQIKYLVRKGCIKPLCDLLLYAD-PEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAE 730 (767)
Q Consensus 654 ~~L~nl~~~~~--~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g 730 (767)
++|+|++.... ......+.+.|+++.|++++.+++ +.++..++|+|.+++...+ ....+.+.|
T Consensus 332 ~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~--------------~~~~~~~~~ 397 (529)
T 1jdh_A 332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--------------NHAPLREQG 397 (529)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG--------------GHHHHHHTT
T ss_pred HHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh--------------hhHHHHHcC
Confidence 99999987522 224567888999999999999876 6999999999999986322 134667899
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHH
Q 004225 731 GFKKIEDLKRHDSNGICEKAVKILEI 756 (767)
Q Consensus 731 ~~~~l~~l~~~~~~~v~~~a~~~l~~ 756 (767)
+++.|.+++.+.++++++.|.+.+.+
T Consensus 398 ~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 398 AIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHHHHHHHHHHHHC---------
T ss_pred CHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 99999999998888888887777665
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=5.3e-29 Score=271.49 Aligned_cols=343 Identities=24% Similarity=0.270 Sum_probs=297.5
Q ss_pred cCHHHHHhhhcCC-CHHHHHHHHHHHHHhcC---CChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhh
Q 004225 359 VSLPGMLAGVWSD-DSGLQLEATTWFRKLLL---PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENT 431 (767)
Q Consensus 359 ~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~---~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~ 431 (767)
+.+|.+++.++++ ++.++..|+..|.+++. .....+++.|+++.|++++++++ +.++..|+++|.+++. +.+
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHH
Confidence 6799999999988 89999999999999993 23556778999999999999988 9999999999999998 567
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCC-chhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhc
Q 004225 432 NVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSS-PRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 509 (767)
..+++.|+++.|+.++.+ .++.++..|+|+|++++.+. +.....+ ..++++.+++++ .++++.++..++|++.+++
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHH
Confidence 788899999999999996 78999999999999999765 3332222 378999999999 7889999999999999999
Q ss_pred CCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHH
Q 004225 510 QGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLW 588 (767)
Q Consensus 510 ~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~ 588 (767)
... +........++++.++.++.+++++++..+++++.+++.+.+...+.+.+.++++.++.++.+++. .++..|++
T Consensus 221 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--~vr~~a~~ 298 (450)
T 2jdq_A 221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE--SIKKEACW 298 (450)
T ss_dssp SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSH--HHHHHHHH
T ss_pred CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCH--HHHHHHHH
Confidence 875 333344557899999999999999999999999999999988888878888999999999999888 99999999
Q ss_pred HHhhhhccCCcceeeh------------------hhhHHHHHHHhhhccC-CHHHHHHHHHcCCHHHHHHHHhcCCchhH
Q 004225 589 TVRYIVKGDGFLTQCT------------------GIAKEACRTISNITAG-NREQIQVVIDAGVIGPLVDLLQNAEFFTK 649 (767)
Q Consensus 589 ~L~~l~~~~~~~~~~l------------------~v~~~a~~~l~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 649 (767)
+|++++.+.+...+.+ .++..|+|+++|++.+ +++..+.+++.|+++.|+.+++..+++++
T Consensus 299 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999997655433211 7899999999999984 77888888999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 650 KEAARAISNAISGGTH----------EQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 650 ~~a~~~L~nl~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
..|+++|.+++..+.. .....+.+.|+++.|..++++++.++++.|..+|.+++...
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999875321 23456778899999999999999999999999999999543
No 22
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=275.04 Aligned_cols=377 Identities=17% Similarity=0.163 Sum_probs=315.5
Q ss_pred hhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHh-cCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhh
Q 004225 357 KLVSLPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQ-SGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENT 431 (767)
Q Consensus 357 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~ 431 (767)
..|.+|.++++|+++++.++..|+..|.+++ ......++. .|+++.|++.+.++++++++..|+.+|.+++. +.+
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 3468999999999999999999999999999 334445554 48899999999876449999999999999998 778
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCC
Q 004225 432 NVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 511 (767)
..+.+.|+++.|+++|+++++.++..|+++|.|++...+..+..+.+.|+++.|++++ .+++..++..++.+|.+++..
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH-CcCCHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999988777888888999999999999 777888999999999999975
Q ss_pred C-CCCCccchhchHHHHHHHhcCCC-HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHH
Q 004225 512 K-PEPPFDQVRPALPALAQLVHSND-NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWT 589 (767)
Q Consensus 512 ~-~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~ 589 (767)
. .....+...++++.|+.++++.+ ..++..++.+|.+++... .....+++.|+++.++.++.+.+. .++..++++
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll~~~~~--~~~~~a~~~ 247 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ--RLVQNCLWT 247 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTTTCSCH--HHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhcCCH--HHHHHHHHH
Confidence 4 44455566799999999998665 678889999999999754 456678888999999999999888 999999999
Q ss_pred HhhhhccCCccee---------------ehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCC--chhHHHH
Q 004225 590 VRYIVKGDGFLTQ---------------CTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAE--FFTKKEA 652 (767)
Q Consensus 590 L~~l~~~~~~~~~---------------~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a 652 (767)
|.+++........ .-+++..|++++++++.+++..++.+++.|+++.|+.++.+.+ +.++..|
T Consensus 248 L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a 327 (644)
T 2z6h_A 248 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327 (644)
T ss_dssp HHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Confidence 9999875433211 0178999999999999998899999999999999999998743 6999999
Q ss_pred HHHHHHhhcCC-CHHH-HHHHHHcCChHHHHhhhcCCC-HHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhh
Q 004225 653 ARAISNAISGG-THEQ-IKYLVRKGCIKPLCDLLLYAD-PEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAA 729 (767)
Q Consensus 653 ~~~L~nl~~~~-~~~~-~~~l~~~~~i~~L~~ll~~~~-~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 729 (767)
+++|+|++... +.+. ...+.+.|+++.|++++.+.+ +.++..|+|+|.++....+ ....+.+.
T Consensus 328 ~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~--------------~~~~i~~~ 393 (644)
T 2z6h_A 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--------------NHAPLREQ 393 (644)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG--------------GHHHHHHT
T ss_pred HHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH--------------HHHHHHHc
Confidence 99999998752 2223 334778999999999999875 7999999999999986322 13567789
Q ss_pred chHHHHHHHhcCCChHHHHHHH
Q 004225 730 EGFKKIEDLKRHDSNGICEKAV 751 (767)
Q Consensus 730 g~~~~l~~l~~~~~~~v~~~a~ 751 (767)
|+++.|.+++.+.+.++++.|.
T Consensus 394 ~~i~~Lv~lL~~~~~~vr~~a~ 415 (644)
T 2z6h_A 394 GAIPRLVQLLVRAHQDTQRRTS 415 (644)
T ss_dssp THHHHHHHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHhccchhhhhHhh
Confidence 9999999998875544444333
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=1e-28 Score=266.87 Aligned_cols=322 Identities=15% Similarity=0.164 Sum_probs=268.2
Q ss_pred hHHHHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc-C--CChHHHHhcCchHHHHhhcc-CCCCHHHHHHHHHHHHHHH
Q 004225 352 NTTIQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL-L--PPSEKVIQSGVVARFVEFLT-REDNPQLQLEAARALTNIA 427 (767)
Q Consensus 352 ~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~--~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~ 427 (767)
+......|++|.+++.|+++++.++..|+++|++++ . +....+++.|+++.|+++|. +++ +++++.|+|+|.+++
T Consensus 37 ~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa 115 (457)
T 1xm9_A 37 KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLS 115 (457)
T ss_dssp HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHh
Confidence 445778899999999999999999999999999999 2 34667779999999999999 666 999999999999999
Q ss_pred h--hhhHHHHhCCChHHHHHhh--------CC--------CCHHHHHHHHHHHHHHhcCCchhHHHHHhc-CCHHHHHHH
Q 004225 428 S--ENTNVVIDGGAVPIFVKLL--------SS--------PSDDVREKAVWALGNIARSSPRDRDLVLSE-KALIPLLAQ 488 (767)
Q Consensus 428 ~--~~~~~~~~~~~l~~L~~lL--------~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~l 488 (767)
. +.+..+++ |++|.|++++ .+ .++++...|+|+|+|++.+ ++.++.+.+. |+++.|+.+
T Consensus 116 ~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~l 193 (457)
T 1xm9_A 116 STDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAY 193 (457)
T ss_dssp TSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHH
T ss_pred cCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHH
Confidence 9 77788888 9999999999 32 2466777999999999987 8899999987 999999999
Q ss_pred Hcc-----CCChHHHHHHHHHHHhhcCCC---------------------------------------------------
Q 004225 489 LNK-----HAKPSMLRNATKTLSRFCQGK--------------------------------------------------- 512 (767)
Q Consensus 489 l~~-----~~~~~~~~~~~~~L~~l~~~~--------------------------------------------------- 512 (767)
+.. ..+..+++.|++++.|++...
T Consensus 194 L~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (457)
T 1xm9_A 194 VQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP 273 (457)
T ss_dssp HHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSC
T ss_pred HHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCc
Confidence 942 146678899999999987310
Q ss_pred CCCCccchhchHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChhH---H-HHHH-hcCcHHHHHHHhcCCCCCCcccchH
Q 004225 513 PEPPFDQVRPALPALAQLVHS-NDNDVLRYACEALSCLSDGTNDK---I-QAVI-EADVCPRLVKLLLHPLPFPFGLTPP 586 (767)
Q Consensus 513 ~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~---~-~~~~-~~~~~~~L~~lL~~~~~~~~v~~~a 586 (767)
.........++++.++.++.+ .++.+++.++|+|.|++.++... . +.++ +.+++|.|+++|.+++.
T Consensus 274 ~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~-------- 345 (457)
T 1xm9_A 274 KGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS-------- 345 (457)
T ss_dssp CGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCH--------
T ss_pred hHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCH--------
Confidence 011223346789999999975 46899999999999999875432 2 3344 57999999999999998
Q ss_pred HHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCc------hhHHHHHHHHHHhh
Q 004225 587 LWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEF------FTKKEAARAISNAI 660 (767)
Q Consensus 587 ~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~------~v~~~a~~~L~nl~ 660 (767)
+++++|+|+|+|++.+. ..+.++..++++.|+++|...++ ++...++++|.|+.
T Consensus 346 ------------------~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~ 405 (457)
T 1xm9_A 346 ------------------DVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM 405 (457)
T ss_dssp ------------------HHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 78888888888887742 34456667899999999998754 58889999999999
Q ss_pred cCCCHHHHHHHHHcCChHHHHhhhcCC-CHHHHHHHHHHHHHHHHh
Q 004225 661 SGGTHEQIKYLVRKGCIKPLCDLLLYA-DPEIVTICLKGLENILKV 705 (767)
Q Consensus 661 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~aL~~l~~~ 705 (767)
.+ +++....+.+.|++++|++++.++ ++++++.|.++|.+++..
T Consensus 406 ~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 406 AS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp TT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred hc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 87 578888889999999999999999 999999999999999864
No 24
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=5e-29 Score=256.10 Aligned_cols=298 Identities=19% Similarity=0.216 Sum_probs=244.2
Q ss_pred cchhhccccchhhhcccchHHHHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCC-
Q 004225 334 LHKVERHGEACWAWKDDLNTTIQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTRE- 410 (767)
Q Consensus 334 L~~l~i~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~- 410 (767)
|+.++-..+.+|.|-+.....-.. ++ ..+..++...+.+|+++|.+++ ...++.+++.|+++.|+.++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~ 86 (354)
T 3nmw_A 13 LEQIRAYCETCWEWQEAHEPGMDQ-DK-----NPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDC 86 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCC------CC-----CCCCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCC-CC-----CCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhccc
Confidence 344555557788884332110000 00 0133344456678999999999 45578888999999999999521
Q ss_pred ---------CCHHHHHHHHHHHHHHHh---hhhHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC-CchhHHHH
Q 004225 411 ---------DNPQLQLEAARALTNIAS---ENTNVVID-GGAVPIFVKLLSSPSDDVREKAVWALGNIARS-SPRDRDLV 476 (767)
Q Consensus 411 ---------~~~~~~~~a~~~L~~l~~---~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~ 476 (767)
+++.++..|+++|.+++. +.+..+.. .|++|.|+++|+++++++++.|+|+|.|++.. +++.++.+
T Consensus 87 ~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i 166 (354)
T 3nmw_A 87 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL 166 (354)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 236899999999999998 35555544 45699999999999999999999999999985 56789999
Q ss_pred HhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCCccc-hhchHHHHHHHhcCCCH----HHHHHHHHHHHhhc
Q 004225 477 LSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQ-VRPALPALAQLVHSNDN----DVLRYACEALSCLS 550 (767)
Q Consensus 477 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~-~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~l~ 550 (767)
.+.|+++.|+++|.++.+.++++.++++|+|++... .....+. ..|++|.|+.++.+.++ ++++.++|+|.|++
T Consensus 167 ~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs 246 (354)
T 3nmw_A 167 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246 (354)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHH
Confidence 999999999998657788999999999999999844 3333444 68999999999986654 59999999999999
Q ss_pred c---CChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHH
Q 004225 551 D---GTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQV 627 (767)
Q Consensus 551 ~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~ 627 (767)
. ..++..+.+.+.|+++.|+++|.+.+. +++++|+|+|+|++.++++.++.
T Consensus 247 ~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------------------------~v~~~A~~aL~nLa~~~~~~~~~ 300 (354)
T 3nmw_A 247 SLIATNEDHRQILRENNCLQTLLQHLKSHSL--------------------------TIVSNACGTLWNLSARNPKDQEA 300 (354)
T ss_dssp HHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH--------------------------HHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hhccCCHHHHHHHHHcCCHHHHHHHHcCCCh--------------------------HHHHHHHHHHHHHhCCCHHHHHH
Confidence 7 677888889999999999999999887 89999999999999888999999
Q ss_pred HHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCC
Q 004225 628 VIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGG 663 (767)
Q Consensus 628 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~ 663 (767)
+++.|+++.|++++++++..+++.|+++|.|++...
T Consensus 301 i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999874
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=7.8e-28 Score=276.85 Aligned_cols=379 Identities=15% Similarity=0.099 Sum_probs=316.8
Q ss_pred cCHHHHHhhhcCC-CHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhH
Q 004225 359 VSLPGMLAGVWSD-DSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTN 432 (767)
Q Consensus 359 ~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~ 432 (767)
+.++.+++.|+++ ++.++..|+..|.+++ ..+...+.+.|+++.|++++++++ +.++..|+++|.+++. +.+.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHH
Confidence 4689999999754 8999999999999988 334667788999999999999998 9999999999999998 5566
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
.+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.+++.......+..++.++.+++...
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 350 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 350 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh
Confidence 77789999999999999999999999999999998888899999999999999999965555667788999999999766
Q ss_pred CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhh
Q 004225 513 PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRY 592 (767)
Q Consensus 513 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~ 592 (767)
.....+...++++.|+.++.+.+..++..++|++.+++....... ...++++.|++++.+.+. +++..|+++|++
T Consensus 351 ~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~~i~~Lv~lL~~~d~--~vr~~A~~aL~~ 425 (780)
T 2z6g_A 351 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDI--NVVTCAAGILSN 425 (780)
T ss_dssp THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHHHHcCCCH--HHHHHHHHHHHH
Confidence 555666678999999999999999999999999999997764311 123589999999999998 999999999999
Q ss_pred hhccCCcceeeh--------------------hhhHHHHHHHhhhccCCHH---HHHHHHHcCCHHHHHHHHhcCCc-hh
Q 004225 593 IVKGDGFLTQCT--------------------GIAKEACRTISNITAGNRE---QIQVVIDAGVIGPLVDLLQNAEF-FT 648 (767)
Q Consensus 593 l~~~~~~~~~~l--------------------~v~~~a~~~l~nl~~~~~~---~~~~~~~~~~i~~L~~ll~~~~~-~v 648 (767)
++.+++...+.+ .++..|+++|+|++...++ ....+.+.++++.|++++.+.+. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 998764322211 5788999999999875433 24577889999999999998876 99
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHH----------------------HHHHHHHHHHHHHHhh
Q 004225 649 KKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPE----------------------IVTICLKGLENILKVG 706 (767)
Q Consensus 649 ~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~----------------------v~~~al~aL~~l~~~~ 706 (767)
+++|+|+|+|++.+ ++....+.+.|+++.|++++.+++.+ ++..++.+|.+++..
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~- 582 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD- 582 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC-
Confidence 99999999999985 45557888999999999999765544 455566666666532
Q ss_pred hhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 707 EAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
...+..+.+.|+++.|.+++.+.+++++..|..++.++..
T Consensus 583 -------------~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 622 (780)
T 2z6g_A 583 -------------IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622 (780)
T ss_dssp -------------HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred -------------hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 1235678899999999999999999999999999988753
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=8.8e-28 Score=246.84 Aligned_cols=270 Identities=16% Similarity=0.143 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHHhcCCchhHHHHH-hc
Q 004225 414 QLQLEAARALTNIAS--ENTNVVIDGGAVPIFVKLLSS-----------PSDDVREKAVWALGNIARSSPRDRDLVL-SE 479 (767)
Q Consensus 414 ~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~ 479 (767)
..+..|+++|.|++. ++|+.+++.|+++.|+.+|.. .++.++.+|+|+|.|++.+++..+..+. ..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 455689999999999 899999999999999999942 3478999999999999988877777665 45
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHhhcCC-C-CCCCccchhchHHHHHHHh-cCCCHHHHHHHHHHHHhhccCChhH
Q 004225 480 KALIPLLAQLNKHAKPSMLRNATKTLSRFCQG-K-PEPPFDQVRPALPALAQLV-HSNDNDVLRYACEALSCLSDGTNDK 556 (767)
Q Consensus 480 g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~-~-~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~ 556 (767)
|+++.|+.+| .++++++++.++|+|.|++.. + ..+..+...|++|.|+.++ .+.+.++++.++++|.|++...++.
T Consensus 127 GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 127 GCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 6699999999 789999999999999999985 3 3345566789999999975 6678999999999999999866555
Q ss_pred HHHHH-hcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc---CCHHHHHHHHHcC
Q 004225 557 IQAVI-EADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA---GNREQIQVVIDAG 632 (767)
Q Consensus 557 ~~~~~-~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~---~~~~~~~~~~~~~ 632 (767)
...+. ..|+++.|++++.+.+. . .. +++++.|+++|.|++. ++++.++.+++.|
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~--~--------------~~------~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g 263 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQ--T--------------NT------LAIIESGGGILRNVSSLIATNEDHRQILRENN 263 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCS--S--------------SC------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred hHHHHHhcCcHHHHHHHhccCCC--c--------------cc------HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC
Confidence 55566 68999999999988764 1 00 0367888888888886 7788999999999
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 707 (767)
+++.|+++|++++..++++|+++|.|++.. +++..+.+.+.|++++|+++++++++.+++.|+++|.+++...+
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999976 78999999999999999999999999999999999999998643
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.7e-24 Score=215.73 Aligned_cols=243 Identities=29% Similarity=0.400 Sum_probs=225.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCC
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPP 516 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~ 516 (767)
|.++.|+++|++++++++..|+++|.+++...++.++.+++.|+++.+++++ .+++.+++..++++|++++... ....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5789999999999999999999999999998888899999999999999999 7888999999999999999885 4456
Q ss_pred ccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhcc
Q 004225 517 FDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKG 596 (767)
Q Consensus 517 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~ 596 (767)
.....++++.++.++.+++++++..++++|.+++...++....+.+.|+++.+++++.+.++
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~------------------ 142 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS------------------ 142 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------------
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------------
Confidence 66678999999999999999999999999999998888888888899999999999999888
Q ss_pred CCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 004225 597 DGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGC 676 (767)
Q Consensus 597 ~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~ 676 (767)
.++..|+++++|++.+++...+.+++.|+++.|+.++.++++.++..|+++|++++.. +++....+.+.|+
T Consensus 143 --------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~ 213 (252)
T 4hxt_A 143 --------EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTSAIKAIVDAGG 213 (252)
T ss_dssp --------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTH
T ss_pred --------HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCC
Confidence 8889999999999998888888999999999999999999999999999999999986 7888889999999
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhh
Q 004225 677 IKPLCDLLLYADPEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 677 i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 708 (767)
++.|++++++++++++..|+++|.++......
T Consensus 214 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 214 VEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999986543
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=9.3e-25 Score=217.49 Aligned_cols=236 Identities=37% Similarity=0.484 Sum_probs=218.5
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRD 474 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 474 (767)
...+.+++.+++++ ++++..|+++|+++.. +.+..+++.|+++.|+++|+++++.++..|+++|++++.++++.++
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45788999999999 8999999999988776 6777889999999999999999999999999999999998899999
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC-CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 004225 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP-PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGT 553 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 553 (767)
.+++.|+++.++.++ .++++.+++.|+++|+|++...+.. ......+++|.|+.++.+++..++..++++|.+++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 7789999999999999999887555 66677899999999999999999999999999999988
Q ss_pred hhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCC
Q 004225 554 NDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGV 633 (767)
Q Consensus 554 ~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~ 633 (767)
++....+.+.++++.+++++.+++. .++..|+++++|++.++++..+.+++.|+
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~--------------------------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 223 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNE--------------------------QILQEALWALSNIASGGNEQKQAVKEAGA 223 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSH--------------------------HHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCH--------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHCCc
Confidence 8888888899999999999999987 88899999999999888999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhc
Q 004225 634 IGPLVDLLQNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 634 i~~L~~ll~~~~~~v~~~a~~~L~nl~~ 661 (767)
++.|++++++++++++..|+++|.|++.
T Consensus 224 i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 224 LEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999875
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=3.2e-24 Score=213.75 Aligned_cols=238 Identities=31% Similarity=0.452 Sum_probs=220.7
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRD 474 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 474 (767)
|.++.|++++++++ ++++..|+++|.+++. +.+..+++.|+++.|++++++++++++..|+++|++++.++++.++
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57899999999999 9999999999999998 5788899999999999999999999999999999999998899999
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 004225 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGT 553 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 553 (767)
.+.+.|+++.++.++ .+++++++..++++|++++... .........++++.++.++.+++++++..++++|.+++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 7889999999999999999655 44455666799999999999999999999999999999988
Q ss_pred hhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCC
Q 004225 554 NDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGV 633 (767)
Q Consensus 554 ~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~ 633 (767)
+...+.+.+.|+++.++.++.+.++ .++..|++++++++.+++...+.+.+.|+
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~--------------------------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~ 213 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDS--------------------------EVQKEAARALANIASGPTSAIKAIVDAGG 213 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCH--------------------------HHHHHHHHHHHHHTTSBHHHHHHHHHTTH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCH--------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 8888888899999999999999887 88899999999999988899999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhcCC
Q 004225 634 IGPLVDLLQNAEFFTKKEAARAISNAISGG 663 (767)
Q Consensus 634 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~ 663 (767)
++.|+++++++++.++..|+++|+|++...
T Consensus 214 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 214 VEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998753
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=5e-24 Score=212.18 Aligned_cols=239 Identities=32% Similarity=0.382 Sum_probs=218.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCC
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPP 516 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~ 516 (767)
...+.++..|.+++++++..|+++|.++....++.++.+++.|+++.+++++ .++++.++..++++|++++.+. ....
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4688999999999999999999999887766677788899999999999999 7888999999999999999865 4455
Q ss_pred ccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhcc
Q 004225 517 FDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKG 596 (767)
Q Consensus 517 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~ 596 (767)
.+...|++|.++.++++++++++..++++|.+++...+.....+.+.|+++.+++++.+++.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------------ 152 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE------------------ 152 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCH------------------
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCH------------------
Confidence 66678999999999999999999999999999999987776778899999999999999887
Q ss_pred CCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 004225 597 DGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGC 676 (767)
Q Consensus 597 ~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~ 676 (767)
.++..|+++++|++.+++...+.+++.|+++.|+++++++++.++..|+++|+|++.. +++....+.+.|+
T Consensus 153 --------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~ 223 (252)
T 4db8_A 153 --------QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGA 223 (252)
T ss_dssp --------HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred --------HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCc
Confidence 8889999999999998888888999999999999999999999999999999999976 7888889999999
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 677 IKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 677 i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
++.|++++.+++++++..|+++|.+++.
T Consensus 224 i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 224 LEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998863
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=2.6e-22 Score=200.41 Aligned_cols=233 Identities=14% Similarity=0.110 Sum_probs=195.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHH-HhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHh
Q 004225 495 PSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQ-LVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLL 573 (767)
Q Consensus 495 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL 573 (767)
.+-+..|+..|.+++.+.++...+...|++|.++. ++.+++++++..|+|+|++++.+++...+.+++.|+++.|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 35677888889988876554455566799999999 99999999999999999999999988888899999999999999
Q ss_pred cCC-CCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHH
Q 004225 574 LHP-LPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEA 652 (767)
Q Consensus 574 ~~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 652 (767)
++. +. .+++.|+|+|+|++.+.+...+.+.+.|+++.|+.+++++++.++..|
T Consensus 134 ~~~~~~--------------------------~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 134 DRDACD--------------------------TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHCSCH--------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred ccCCCH--------------------------HHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 864 55 789999999999999989988899999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchH
Q 004225 653 ARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGF 732 (767)
Q Consensus 653 ~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 732 (767)
+|+|++++.+ +++.+..+++.|+++.|+.++.++++++++.|+++|.+++...+........ ....+...+++
T Consensus 188 ~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~--~~~~l~~lL~~---- 260 (296)
T 1xqr_A 188 AFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLRH---- 260 (296)
T ss_dssp HHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC--GGGCHHHHHHH----
T ss_pred HHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhc--cHHHHHHHHHH----
Confidence 9999999987 6788899999999999999999999999999999999999864322110000 11234555543
Q ss_pred HHHHHHhcCC-ChHHHHHHHHHHHHhcCCC
Q 004225 733 KKIEDLKRHD-SNGICEKAVKILEIYWSCG 761 (767)
Q Consensus 733 ~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~ 761 (767)
.+..++.++ +.+++++|..++++||..+
T Consensus 261 -~~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 261 -RCQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp -HHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred -HHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 355666565 7899999999999999754
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.7e-21 Score=211.07 Aligned_cols=346 Identities=14% Similarity=0.076 Sum_probs=258.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-CCC-hHHHH-hcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh------h--
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-LPP-SEKVI-QSGVVARFVEFLTREDNPQLQLEAARALTNIAS------E-- 429 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~-~~~i~-~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~------~-- 429 (767)
.+.+.+.+.+++...+..|+..|..+. .+. .+.+. ..|.++.|+++++...+..+.+.++.++.|++. +
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~ 415 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXX 415 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhh
Confidence 455677777777777899999999999 554 44444 456799999999963337899999999999987 1
Q ss_pred ---------------------------------hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 004225 430 ---------------------------------NTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLV 476 (767)
Q Consensus 430 ---------------------------------~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 476 (767)
+++.+++.|++|.|+.++.++++.++..|+++|.|++.+ ++.|..+
T Consensus 416 ~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~l 494 (778)
T 3opb_A 416 XXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQL 494 (778)
T ss_dssp C------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHH
T ss_pred hhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 234667899999999999999999999999999999965 8899999
Q ss_pred HhcCCHHHHHHHHccCCCh---HHHHHHHHHHHhhcCCC-CCCC--ccchhchHHHHHHHhcC-CCH-------------
Q 004225 477 LSEKALIPLLAQLNKHAKP---SMLRNATKTLSRFCQGK-PEPP--FDQVRPALPALAQLVHS-NDN------------- 536 (767)
Q Consensus 477 ~~~g~i~~L~~ll~~~~~~---~~~~~~~~~L~~l~~~~-~~~~--~~~~~~~i~~L~~ll~~-~~~------------- 536 (767)
++.|++++|+.++. +... ..++.|+.+|.+++... |... .....++++.|+.++.. ++.
T Consensus 495 vqqGal~~LL~lL~-s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~ 573 (778)
T 3opb_A 495 AQQGAVKIILEYLA-NKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL 573 (778)
T ss_dssp HHTTHHHHHHHHTT-CC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred HHCCCHHHHHHHHh-cCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence 99999999999994 4433 38999999999998554 2211 11124899999999983 221
Q ss_pred HHHHHHHHHHHhhccCCh----hHHHHHHhc-CcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHH
Q 004225 537 DVLRYACEALSCLSDGTN----DKIQAVIEA-DVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEAC 611 (767)
Q Consensus 537 ~v~~~a~~~L~~l~~~~~----~~~~~~~~~-~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~ 611 (767)
--+..|+.+|.|++..++ +..+.+++. |+++.+..++.+++. .++ ++|+
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~--~Vr------------------------rAA~ 627 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENV--PLQ------------------------RSTL 627 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSH--HHH------------------------HHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCH--HHH------------------------HHHH
Confidence 227799999999998863 334557774 899999999999887 444 4444
Q ss_pred HHHhhhccCCHHHH-HHHHH------cCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhh
Q 004225 612 RTISNITAGNREQI-QVVID------AGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRK-GCIKPLCDL 683 (767)
Q Consensus 612 ~~l~nl~~~~~~~~-~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~-~~i~~L~~l 683 (767)
++++|++... +.+ +.+++ .+-++.|+.+++..+.++|++|+|+|+|++.. ++..++.+++. ++++.++++
T Consensus 628 elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~~~ia~~ll~~~~gi~~Ll~l 705 (778)
T 3opb_A 628 ELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-IPLIAKELLTKKELIENAIQV 705 (778)
T ss_dssp HHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHccccHHHHHHH
Confidence 5555544421 111 12221 12378899999999999999999999999765 57777888886 899999999
Q ss_pred hcC--CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCC
Q 004225 684 LLY--ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDS 743 (767)
Q Consensus 684 l~~--~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~ 743 (767)
+++ ++++++..++.+++|++....... ..+.+..........+.+.+++.+++
T Consensus 706 L~~~~~~~~l~~R~~~~l~NL~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 706 FADQIDDIELRQRLLMLFFGLFEVIPDNG-------TNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTCCSTT-------TTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhhccCC-------ChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 998 899999999999999997432111 11223444445666777777776543
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=5.4e-21 Score=184.28 Aligned_cols=199 Identities=34% Similarity=0.412 Sum_probs=182.4
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CC
Q 004225 436 DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PE 514 (767)
Q Consensus 436 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~ 514 (767)
..+..+.|+.+|++++++++..|+++|++++.++++.++.+++.|+++.+++++ .++++.+++.|+++|+|++... ..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 457899999999999999999999999999988888999999999999999999 7889999999999999999765 44
Q ss_pred CCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 515 PPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 515 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
...+...|++|.++.+++++++.++..++|+|.+++...++..+.+.+.|+++.+++++++++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---------------- 152 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE---------------- 152 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH----------------
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCH----------------
Confidence 4556668999999999999999999999999999999888888888899999999999999887
Q ss_pred ccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhc
Q 004225 595 KGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 595 ~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~ 661 (767)
.++..|+++++|++..+++....+.+.|+++.|++++.++++.++..|+++|.+++.
T Consensus 153 ----------~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 153 ----------QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp ----------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred ----------HHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 889999999999999888889999999999999999999999999999999999875
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=5.5e-20 Score=177.17 Aligned_cols=201 Identities=37% Similarity=0.485 Sum_probs=182.3
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCC
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDG 598 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~ 598 (767)
...+..+.+..+++++|++++..++++|.+++...++....+.+.|+++.++++|.+++.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-------------------- 68 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE-------------------- 68 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------------------
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH--------------------
Confidence 345788999999999999999999999999998888888889999999999999999988
Q ss_pred cceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 004225 599 FLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIK 678 (767)
Q Consensus 599 ~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~ 678 (767)
.++..|+++++|++.++++..+.+++.|+++.|+.+++++++.++..|+++|+|++.. +++....+.+.|+++
T Consensus 69 ------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~ 141 (210)
T 4db6_A 69 ------QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALP 141 (210)
T ss_dssp ------HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHH
T ss_pred ------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHH
Confidence 8889999999999988889999999999999999999999999999999999999986 688888889999999
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 004225 679 PLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYW 758 (767)
Q Consensus 679 ~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 758 (767)
.|++++++++++++..|+++|.+++...+ ..+..+.+.|+++.|.+++.++++++++.|.++|.++-
T Consensus 142 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-------------~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 142 ALVQLLSSPNEQILQEALWALSNIASGGN-------------EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCH-------------HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCc-------------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999997422 24667789999999999999999999999999999875
Q ss_pred C
Q 004225 759 S 759 (767)
Q Consensus 759 ~ 759 (767)
.
T Consensus 209 ~ 209 (210)
T 4db6_A 209 S 209 (210)
T ss_dssp C
T ss_pred c
Confidence 3
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.3e-20 Score=202.54 Aligned_cols=378 Identities=13% Similarity=0.061 Sum_probs=287.4
Q ss_pred HHHHHhhhcC-CCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-h-hhH-HHH
Q 004225 361 LPGMLAGVWS-DDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-E-NTN-VVI 435 (767)
Q Consensus 361 i~~l~~~l~s-~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~-~~~-~~~ 435 (767)
.|.+.+.+.+ .+.......+..|...+ +...+..+....++.|.+.+++ ..++..|+-+|.++.. . ... .+.
T Consensus 257 ~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~si~ 333 (778)
T 3opb_A 257 SKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCINLK 333 (778)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCCHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCcHH
Confidence 4445555533 44556666777777766 6666777777888999999975 3688899999999887 1 111 111
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh-cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCC
Q 004225 436 DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLS-EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPE 514 (767)
Q Consensus 436 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 514 (767)
...+.+.++|.+++.+.+..|++.|..++.+ ++.++.+.+ .|+++.|++++....+.++...++.++.|++...+.
T Consensus 334 --~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 334 --QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp --HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred --HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 2567788888887777799999999999965 566666654 457999999994457889999999999999986532
Q ss_pred C---------------------------------------CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChh
Q 004225 515 P---------------------------------------PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTND 555 (767)
Q Consensus 515 ~---------------------------------------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 555 (767)
. ......|++|.|+.++.++++.++..++|+|.+++.. ++
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~ 489 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN 489 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence 1 1112368999999999999999999999999999966 56
Q ss_pred HHHHHHhcCcHHHHHHHhcCCCCC-CcccchHHHHHhhhhccCC-cc-------eeeh-----------h----------
Q 004225 556 KIQAVIEADVCPRLVKLLLHPLPF-PFGLTPPLWTVRYIVKGDG-FL-------TQCT-----------G---------- 605 (767)
Q Consensus 556 ~~~~~~~~~~~~~L~~lL~~~~~~-~~v~~~a~~~L~~l~~~~~-~~-------~~~l-----------~---------- 605 (767)
.+..+++.|+++.|+.++.+.... ...+..|+++|++++...+ .. ...+ .
T Consensus 490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~ 569 (778)
T 3opb_A 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569 (778)
T ss_dssp GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence 677788899999999999988651 1278899999999983321 11 0000 1
Q ss_pred ----h-hHHHHHHHhhhccCC----HHHHHHHHHc-CCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHH-HHHHH-
Q 004225 606 ----I-AKEACRTISNITAGN----REQIQVVIDA-GVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQI-KYLVR- 673 (767)
Q Consensus 606 ----v-~~~a~~~l~nl~~~~----~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~-~~l~~- 673 (767)
. +.+|+.+|.|++..+ .+.++.++++ |+++.+.+++.+.+..+|++|+++++|++.. ++.+ +.+..
T Consensus 570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~k~~~~ 647 (778)
T 3opb_A 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAAKFFNL 647 (778)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGGGTSCC
T ss_pred cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHhh
Confidence 1 669999999999975 3456778885 9999999999999999999999999999984 4443 23322
Q ss_pred -----cCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC--CChHH
Q 004225 674 -----KGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH--DSNGI 746 (767)
Q Consensus 674 -----~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~--~~~~v 746 (767)
.+.++.|+.++.++|.+++.+|.|||.++....+. .....+...++++.+..++.+ +++++
T Consensus 648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~------------ia~~ll~~~~gi~~Ll~lL~~~~~~~~l 715 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL------------IAKELLTKKELIENAIQVFADQIDDIEL 715 (778)
T ss_dssp SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH------------HHHHHTTCHHHHHHHHHHHHHTTTCHHH
T ss_pred cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH------------HHHHHHHccccHHHHHHHHhccCCCHHH
Confidence 12378999999999999999999999999753221 123444445899999999988 89999
Q ss_pred HHHHHHHHHHhcC
Q 004225 747 CEKAVKILEIYWS 759 (767)
Q Consensus 747 ~~~a~~~l~~~~~ 759 (767)
+.++..++.+++.
T Consensus 716 ~~R~~~~l~NL~~ 728 (778)
T 3opb_A 716 RQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.84 E-value=7.6e-20 Score=182.59 Aligned_cols=180 Identities=16% Similarity=0.099 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHH
Q 004225 413 PQLQLEAARALTNIAS--ENTNVVIDGGAVPIFVK-LLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQL 489 (767)
Q Consensus 413 ~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 489 (767)
.+.+..|+..|.+++. ++...+.+.|++|.|+. +|.++++.++..|+|+|++++.+++..++.+++.|++++|+.++
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 4678889999999998 77888889999999999 99999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHH
Q 004225 490 NKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPR 568 (767)
Q Consensus 490 ~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 568 (767)
..+++..+++.|+|+|+|++++. +....+...+++|.|+.++++++..++..++|+|++++.++++.++.+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 54568999999999999999876 33344556799999999999999999999999999999888888999999999999
Q ss_pred HHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 569 LVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 569 L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
|+.+|.+++. +++..|+++|++++
T Consensus 214 Lv~LL~~~d~--~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 214 LVALVRTEHS--PFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHTSCCS--THHHHHHHHHHHHH
T ss_pred HHHHHcCCCh--hHHHHHHHHHHHHH
Confidence 9999999998 55555555555544
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=170.01 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=163.5
Q ss_pred chHHHHhhccCCCCH--HHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhH
Q 004225 399 VVARFVEFLTREDNP--QLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDR 473 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~--~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 473 (767)
.++.++++|++++ + +++..|++++.+++. +++..+++.|++|.|+++|+++++++++.|+|+|.|++.++++++
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4799999999988 6 889999999999997 678889999999999999999999999999999999999889999
Q ss_pred HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc----------------CCCHH
Q 004225 474 DLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH----------------SNDND 537 (767)
Q Consensus 474 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~----------------~~~~~ 537 (767)
..+.+.|+|++|+++|..+++.++++.++.+|+|++..+..+.. ...+++|.|+.++. ..+.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~-i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL-MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH-HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH-HHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995468899999999999999987644433 34568999987652 13679
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHhc-CcHHHHHHHhcCC----CCCCcccchHHHHHhhhhc
Q 004225 538 VLRYACEALSCLSDGTNDKIQAVIEA-DVCPRLVKLLLHP----LPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 538 v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~----~~~~~v~~~a~~~L~~l~~ 595 (767)
+++++.++|.|++..+++..+.+.+. |+++.|+.+++.. +.....+.+|+.+|.||+.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 99999999999999887888888775 6789999999763 1112556666666666653
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=160.88 Aligned_cols=190 Identities=16% Similarity=0.191 Sum_probs=161.8
Q ss_pred CHHHHHhhhcCCCH--HHHHHHHHHHHHhc--C-CChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhh
Q 004225 360 SLPGMLAGVWSDDS--GLQLEATTWFRKLL--L-PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENT 431 (767)
Q Consensus 360 ~i~~l~~~l~s~~~--~~~~~a~~~L~~l~--~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~ 431 (767)
.+|.+++.|+++++ +++..|+..+++++ + +....+++.|++|.|+++|++++ +++|..|+++|++++. +++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 58999999999988 88999999999998 3 35677889999999999999988 9999999999999997 788
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc---------------cCCCh
Q 004225 432 NVVIDGGAVPIFVKLLS-SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN---------------KHAKP 495 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---------------~~~~~ 495 (767)
..+.+.|++|.|+++|. +.+.+++++|+.+|+|++.. +..+..+.+ +++++|++++. ...+.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999998 57999999999999999965 556776766 46899988652 12367
Q ss_pred HHHHHHHHHHHhhcCCC-CCCCccc-hhchHHHHHHHhcC------CCHHHHHHHHHHHHhhccC
Q 004225 496 SMLRNATKTLSRFCQGK-PEPPFDQ-VRPALPALAQLVHS------NDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 496 ~~~~~~~~~L~~l~~~~-~~~~~~~-~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 552 (767)
++++++.++|.|++..+ ..++.+. ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999999865 4444444 45789999999973 3678999999999999864
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=2.3e-16 Score=164.71 Aligned_cols=289 Identities=13% Similarity=0.183 Sum_probs=131.8
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
+++|++|++.++. +..++. +..+++|++|++++|. +.++ ..+..+++|++|++.++ .++.++.
T Consensus 43 l~~L~~L~l~~~~-i~~~~~---~~~~~~L~~L~l~~n~-i~~~----------~~~~~l~~L~~L~L~~n-~i~~~~~- 105 (347)
T 4fmz_A 43 LESITKLVVAGEK-VASIQG---IEYLTNLEYLNLNGNQ-ITDI----------SPLSNLVKLTNLYIGTN-KITDISA- 105 (347)
T ss_dssp HTTCSEEECCSSC-CCCCTT---GGGCTTCCEEECCSSC-CCCC----------GGGTTCTTCCEEECCSS-CCCCCGG-
T ss_pred cccccEEEEeCCc-cccchh---hhhcCCccEEEccCCc-cccc----------hhhhcCCcCCEEEccCC-cccCchH-
Confidence 5667777777753 344422 3456777777777663 4433 11445666777776665 3444432
Q ss_pred CCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchh---------cchhhHhhhcc
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTI---------LSLGDFLQRLH 155 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~ 155 (767)
...+++|++|++++|..- ...+ + ..+++|++|++++|......+.+...... ......+..++
T Consensus 106 ---~~~l~~L~~L~l~~n~i~-~~~~--~--~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 177 (347)
T 4fmz_A 106 ---LQNLTNLRELYLNEDNIS-DISP--L--ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLT 177 (347)
T ss_dssp ---GTTCTTCSEEECTTSCCC-CCGG--G--TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred ---HcCCCcCCEEECcCCccc-Cchh--h--ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCC
Confidence 345666666666665422 1111 1 25566666666665443331110000000 00000133444
Q ss_pred ccceeeecCCCC--CCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEecc
Q 004225 156 TMKVLQIGGYSA--SLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSR 233 (767)
Q Consensus 156 ~L~~L~l~~~~~--~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (767)
+|+.|.++++.. ..++..+..++.+.+.++. +..+ .....+++|++|+++++.. ....+ ...+++|++|++++
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ-ITDI--TPVANMTRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIGT 252 (347)
T ss_dssp TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCS
T ss_pred CCCEEEccCCcccccccccCCCccceeecccCC-CCCC--chhhcCCcCCEEEccCCcc-CCCcc-hhcCCCCCEEECCC
Confidence 555555554432 1112334444444444432 2221 1123345556666655432 22221 44555666666655
Q ss_pred CccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceE
Q 004225 234 CNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERL 313 (767)
Q Consensus 234 c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 313 (767)
|. ++.+. .+..+++|++|++++|. +..++. ... +++|+.|++++|+ ++.... .....+|+|++|
T Consensus 253 n~-l~~~~---~~~~l~~L~~L~l~~n~-l~~~~~-~~~--------l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L 316 (347)
T 4fmz_A 253 NQ-ISDIN---AVKDLTKLKMLNVGSNQ-ISDISV-LNN--------LSQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTL 316 (347)
T ss_dssp SC-CCCCG---GGTTCTTCCEEECCSSC-CCCCGG-GGG--------CTTCSEEECCSSC-CCGGGH-HHHHTCTTCSEE
T ss_pred Cc-cCCCh---hHhcCCCcCEEEccCCc-cCCChh-hcC--------CCCCCEEECcCCc-CCCcCh-hHhhccccCCEE
Confidence 52 22221 12345566666665553 333311 111 5566666666653 222221 112345666666
Q ss_pred eecCCCCcccccccCCCCcccchhhccc
Q 004225 314 VVDDCPDMKIFSEGKLSTPKLHKVERHG 341 (767)
Q Consensus 314 ~i~~c~~l~~~~~~~~~~~~L~~l~i~~ 341 (767)
++++|+ ++..+. ....++|+.+++++
T Consensus 317 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 317 FLSQNH-ITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp ECCSSS-CCCCGG-GGGCTTCSEESSSC
T ss_pred EccCCc-cccccC-hhhhhccceeehhh
Confidence 666664 333322 22334555565554
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=9.8e-16 Score=159.94 Aligned_cols=270 Identities=12% Similarity=0.125 Sum_probs=166.8
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|++++|. +..+++ +..+++|++|++++|. +..+ +.+..+++|++|+++++. +..++.
T Consensus 64 ~~~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~L~~n~-i~~~----------~~~~~l~~L~~L~l~~n~-i~~~~~ 127 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQ-ITDISP---LSNLVKLTNLYIGTNK-ITDI----------SALQNLTNLRELYLNEDN-ISDISP 127 (347)
T ss_dssp GCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC----------GGGTTCTTCSEEECTTSC-CCCCGG
T ss_pred hcCCccEEEccCCc-cccchh---hhcCCcCCEEEccCCc-ccCc----------hHHcCCCcCCEEECcCCc-ccCchh
Confidence 47788888888873 555543 4678888888888773 4433 224445666666665543 333322
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccc--cCCCc------c-hhcchhhHhhhc
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKY--HLGDE------R-TILSLGDFLQRL 154 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~------~-~~~~~~~~~~~l 154 (767)
...+++|++|++++|........ + ..+++|++|++.+|......+ .++.- . ....+ ..+..+
T Consensus 128 ----~~~l~~L~~L~l~~n~~~~~~~~--~--~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l 198 (347)
T 4fmz_A 128 ----LANLTKMYSLNLGANHNLSDLSP--L--SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-SPLASL 198 (347)
T ss_dssp ----GTTCTTCCEEECTTCTTCCCCGG--G--TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-GGGGGC
T ss_pred ----hccCCceeEEECCCCCCcccccc--h--hhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc-ccccCC
Confidence 23455555555555543332211 1 234444444444433211000 00000 0 00011 116678
Q ss_pred cccceeeecCCCC--CCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEec
Q 004225 155 HTMKVLQIGGYSA--SLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVS 232 (767)
Q Consensus 155 ~~L~~L~l~~~~~--~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (767)
++|+.+.++++.. ..++..++.++.+.+.++. +..+. ....+++|++|+++++. +..+ +....+++|++|+++
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLS--PLANLSQLTWLEIGTNQ-ISDI-NAVKDLTKLKMLNVG 273 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECC
T ss_pred CccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCc--chhcCCCCCEEECCCCc-cCCC-hhHhcCCCcCEEEcc
Confidence 8999999988765 2335667899999999885 44442 25568999999999874 3433 446788999999999
Q ss_pred cCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccce
Q 004225 233 RCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLER 312 (767)
Q Consensus 233 ~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 312 (767)
+| .++.++ .+..+++|++|++++|.-....+..... +++|+.|++++++ ++.++. ...+++|++
T Consensus 274 ~n-~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~--------l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~ 337 (347)
T 4fmz_A 274 SN-QISDIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGG--------LTNLTTLFLSQNH-ITDIRP---LASLSKMDS 337 (347)
T ss_dssp SS-CCCCCG---GGGGCTTCSEEECCSSCCCGGGHHHHHT--------CTTCSEEECCSSS-CCCCGG---GGGCTTCSE
T ss_pred CC-ccCCCh---hhcCCCCCCEEECcCCcCCCcChhHhhc--------cccCCEEEccCCc-cccccC---hhhhhccce
Confidence 98 455542 2467999999999999743333222223 8999999999987 555543 357899999
Q ss_pred EeecCCC
Q 004225 313 LVVDDCP 319 (767)
Q Consensus 313 L~i~~c~ 319 (767)
|++.+|+
T Consensus 338 L~l~~N~ 344 (347)
T 4fmz_A 338 ADFANQV 344 (347)
T ss_dssp ESSSCC-
T ss_pred eehhhhc
Confidence 9999985
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=7e-15 Score=160.64 Aligned_cols=294 Identities=18% Similarity=0.203 Sum_probs=204.9
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCC
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGD 85 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 85 (767)
+++++|+++++. ++.+++ ..+..+++|++|+++++. +..+. +..+..+++|++|++.++. ++.++...
T Consensus 32 ~~l~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-i~~~~--------~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQ-DEFASFPHLEELELNENI-VSAVE--------PGAFNNLFNLRTLGLRSNR-LKLIPLGV 99 (477)
T ss_dssp TTCSEEECCSSC-CCEECT-TTTTTCTTCCEEECTTSC-CCEEC--------TTTTTTCTTCCEEECCSSC-CCSCCTTS
T ss_pred CCCcEEECCCCc-cceECH-hHccCCCCCCEEECCCCc-cCEeC--------hhhhhCCccCCEEECCCCc-CCccCccc
Confidence 479999999974 666633 345689999999999874 55441 2355678999999998863 66666543
Q ss_pred CcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCC
Q 004225 86 LDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGY 165 (767)
Q Consensus 86 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (767)
...+++|++|++++|... ...+..+ ..+++|++|+++++...... ...+..+++|+.|.++++
T Consensus 100 --~~~l~~L~~L~Ls~n~i~-~~~~~~~--~~l~~L~~L~l~~n~l~~~~------------~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 100 --FTGLSNLTKLDISENKIV-ILLDYMF--QDLYNLKSLEVGDNDLVYIS------------HRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp --STTCTTCCEEECTTSCCC-EECTTTT--TTCTTCCEEEECCTTCCEEC------------TTSSTTCTTCCEEEEESC
T ss_pred --ccCCCCCCEEECCCCccc-cCChhHc--cccccCCEEECCCCccceeC------------hhhccCCCCCCEEECCCC
Confidence 356899999999987643 3333334 36899999999987642211 123567889999999887
Q ss_pred CCC-CC---cccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhc
Q 004225 166 SAS-LP---YEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVL 241 (767)
Q Consensus 166 ~~~-~~---~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 241 (767)
... .+ +..+++|+.|.+.++. +..+.......+++|++|+++++..+..++.......+|++|++++|. ++.++
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 240 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVP 240 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCC
T ss_pred cCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccC
Confidence 642 22 3456788888888875 444433345567899999999988887766666666799999999884 55553
Q ss_pred CchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCc
Q 004225 242 TSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDM 321 (767)
Q Consensus 242 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 321 (767)
. ..+..+++|++|+++++. +..++..... .+++|+.|+++++ +++.+... ....+++|++|+++++ .+
T Consensus 241 ~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l 308 (477)
T 2id5_A 241 Y-LAVRHLVYLRFLNLSYNP-ISTIEGSMLH-------ELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QL 308 (477)
T ss_dssp H-HHHTTCTTCCEEECCSSC-CCEECTTSCT-------TCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCSS-CC
T ss_pred H-HHhcCccccCeeECCCCc-CCccChhhcc-------ccccCCEEECCCC-ccceECHH-HhcCcccCCEEECCCC-cC
Confidence 3 235678999999999876 5555433221 1789999999986 45555332 2357899999999988 66
Q ss_pred ccccccCC-CCcccchhhcccc
Q 004225 322 KIFSEGKL-STPKLHKVERHGE 342 (767)
Q Consensus 322 ~~~~~~~~-~~~~L~~l~i~~~ 342 (767)
+.++.... ..++|+.+++++.
T Consensus 309 ~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 309 TTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp SCCCGGGBSCGGGCCEEECCSS
T ss_pred ceeCHhHcCCCcccCEEEccCC
Confidence 66665443 3467888888773
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=1.6e-15 Score=160.92 Aligned_cols=290 Identities=16% Similarity=0.181 Sum_probs=173.0
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++++.|++.++. ++.+ |...+..+++|++|+++++. +..+. +..+..+++|++|++.++. ++.++.
T Consensus 43 ~l~~l~~l~l~~~~-l~~l-~~~~~~~l~~L~~L~L~~n~-i~~~~--------~~~~~~l~~L~~L~L~~n~-l~~~~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDLQ-IEEID--------TYAFAYAHTIQKLYMGFNA-IRYLPP 110 (390)
T ss_dssp GGCCCSEEEEESCE-ESEE-CTHHHHHCCCCSEEECTTSC-CCEEC--------TTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred ccCCceEEEecCCc-hhhC-ChhHhcccccCcEEECCCCc-ccccC--------hhhccCCCCcCEEECCCCC-CCcCCH
Confidence 35788888888864 6666 34444678888888888774 55441 1245567788888888764 555543
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeec
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIG 163 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (767)
.. ...+++|++|++++|. +.......+ ..+++|++|++++|...... ...+..+++|+.|.++
T Consensus 111 ~~--~~~l~~L~~L~L~~n~-l~~l~~~~~--~~l~~L~~L~L~~n~l~~~~------------~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 111 HV--FQNVPLLTVLVLERND-LSSLPRGIF--HNTPKLTTLSMSNNNLERIE------------DDTFQATTSLQNLQLS 173 (390)
T ss_dssp TT--TTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCBCC------------TTTTSSCTTCCEEECC
T ss_pred HH--hcCCCCCCEEECCCCc-cCcCCHHHh--cCCCCCcEEECCCCccCccC------------hhhccCCCCCCEEECC
Confidence 32 3467888888888774 333332223 25778888888876542210 1124556677777777
Q ss_pred CCCC-CCCcccccCCceeeeeecccccch---------hhc-------cccccccccEEEecCCCccccccCCCCcCCCC
Q 004225 164 GYSA-SLPYEKVENGMWVEIREAFHLEHI---------LIR-------ESSVTNNLVILRVKGCDHLVNLVPPSTSFQNL 226 (767)
Q Consensus 164 ~~~~-~~~~~~~~~l~~l~i~~~~~l~~~---------~~~-------~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L 226 (767)
++.. ..+...++.++.+.+.++. +..+ ... ....+++|++|+++++.. .. .+....+++|
T Consensus 174 ~n~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l-~~-~~~l~~l~~L 250 (390)
T 3o6n_A 174 SNRLTHVDLSLIPSLFHANVSYNL-LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TD-TAWLLNYPGL 250 (390)
T ss_dssp SSCCSBCCGGGCTTCSEEECCSSC-CSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC-CC-CGGGGGCTTC
T ss_pred CCcCCccccccccccceeeccccc-ccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCC-cc-cHHHcCCCCc
Confidence 6553 2334445555555554432 1111 000 012235677777766543 22 2335567788
Q ss_pred CEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCcccc
Q 004225 227 TNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFK 306 (767)
Q Consensus 227 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 306 (767)
++|+++++. ++...+.. +..+++|++|+++++. ++.++..... +++|+.|+++++ .++.++.. ...
T Consensus 251 ~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~--------l~~L~~L~L~~n-~l~~~~~~--~~~ 316 (390)
T 3o6n_A 251 VEVDLSYNE-LEKIMYHP-FVKMQRLERLYISNNR-LVALNLYGQP--------IPTLKVLDLSHN-HLLHVERN--QPQ 316 (390)
T ss_dssp SEEECCSSC-CCEEESGG-GTTCSSCCEEECCSSC-CCEEECSSSC--------CTTCCEEECCSS-CCCCCGGG--HHH
T ss_pred cEEECCCCc-CCCcChhH-ccccccCCEEECCCCc-CcccCcccCC--------CCCCCEEECCCC-cceecCcc--ccc
Confidence 888888774 33333332 4567888888888764 5555443333 788888888887 56666532 346
Q ss_pred CCccceEeecCCCCcccccccCCCCcccchhhcccc
Q 004225 307 FPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 307 ~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~~ 342 (767)
+++|++|++.+|+ ++.++. ...++|+.+++++.
T Consensus 317 l~~L~~L~L~~N~-i~~~~~--~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 317 FDRLENLYLDHNS-IVTLKL--STHHTLKNLTLSHN 349 (390)
T ss_dssp HTTCSEEECCSSC-CCCCCC--CTTCCCSEEECCSS
T ss_pred cCcCCEEECCCCc-cceeCc--hhhccCCEEEcCCC
Confidence 7888888888884 555543 23456788888773
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.65 E-value=6.4e-15 Score=164.53 Aligned_cols=320 Identities=17% Similarity=0.168 Sum_probs=241.9
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
.+..+.+.+.++++.++..|+..+.++..+.... .+++.+.+++.+++ +.+|..|+.++.++.....+.+.+.+.
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~~~~~ 161 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVEDQGF 161 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHH----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHH----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcccccH
Confidence 4677788899999999999999998877433222 24678889999888 999999999999998822222223467
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
++.+..+|.++++.++..|+++|+.++..+++........+.+..+++.+ .+.++..+..++.++..++..+ ...
T Consensus 162 ~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~----~~~ 236 (591)
T 2vgl_B 162 LDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD----DRE 236 (591)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS----HHH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC----hHH
Confidence 89999999999999999999999999987664310011123467777777 5678889999999998887432 223
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC---ChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhcc
Q 004225 520 VRPALPALAQLVHSNDNDVLRYACEALSCLSDG---TNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKG 596 (767)
Q Consensus 520 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~ 596 (767)
...+++.+..++++.++.|+..|++++..+... +++..+.+. ..+.+.++.++. .+. +++..|+.+++.+...
T Consensus 237 ~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~--~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 237 AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEP--EVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCc--cHHHHHHHHHHHHHHh
Confidence 457888888889999999999999999999753 333444333 246677777664 667 9999999999999865
Q ss_pred CCccee-e-----------hhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCC
Q 004225 597 DGFLTQ-C-----------TGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGT 664 (767)
Q Consensus 597 ~~~~~~-~-----------l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~ 664 (767)
.+...+ . ..++..|++++.+++.... .+ .+++.|..++++.+.++|.++++++++++...
T Consensus 313 ~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n--v~-----~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~- 384 (591)
T 2vgl_B 313 RPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN--IA-----QVLAELKEYATEVDVDFVRKAVRAIGRCAIKV- 384 (591)
T ss_dssp CCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST--HH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh--HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-
Confidence 433211 1 2689999999999887532 22 25667888888889999999999999999873
Q ss_pred HHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 665 HEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 665 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
+..... .++.|++++.+.+..++..++.++..++...
T Consensus 385 ~~~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~ 421 (591)
T 2vgl_B 385 EQSAER-----CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY 421 (591)
T ss_dssp HHHHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHH-----HHHHHHHHHcccchHHHHHHHHHHHHHHHHC
Confidence 443333 6788999999999999999998999888653
No 44
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.65 E-value=1.5e-15 Score=175.57 Aligned_cols=308 Identities=14% Similarity=0.026 Sum_probs=157.5
Q ss_pred CCCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccccccccc
Q 004225 3 CGIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFC 82 (767)
Q Consensus 3 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (767)
..+++|++|++++|. +....+. .+..+++|++|++++|. +.... +. ..+++|++|++.++.-...+|
T Consensus 220 ~~l~~L~~L~Ls~n~-l~~~~~~-~l~~l~~L~~L~Ls~n~-l~~~~---------~~-~~l~~L~~L~L~~n~l~~~ip 286 (768)
T 3rgz_A 220 GDCSALQHLDISGNK-LSGDFSR-AISTCTELKLLNISSNQ-FVGPI---------PP-LPLKSLQYLSLAENKFTGEIP 286 (768)
T ss_dssp TTCCSCCEEECCSSC-CCSCHHH-HTTTCSSCCEEECCSSC-CEESC---------CC-CCCTTCCEEECCSSEEEESCC
T ss_pred ccCCCCCEEECcCCc-CCCcccH-HHhcCCCCCEEECCCCc-ccCcc---------Cc-cccCCCCEEECcCCccCCccC
Confidence 357899999999986 4332222 34678999999998885 33211 11 146777777777765332344
Q ss_pred CCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCccccccccc--CC-----------Ccchhcchhh
Q 004225 83 TGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYH--LG-----------DERTILSLGD 149 (767)
Q Consensus 83 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~-----------~~~~~~~~~~ 149 (767)
... ...+++|++|++++|.... ..+..+ ..+++|++|++++|.....++. +. ...-...+..
T Consensus 287 ~~~--~~~~~~L~~L~Ls~n~l~~-~~p~~~--~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 287 DFL--SGACDTLTGLDLSGNHFYG-AVPPFF--GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp CCS--CTTCTTCSEEECCSSEEEE-CCCGGG--GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred HHH--HhhcCcCCEEECcCCcCCC-ccchHH--hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 321 1224677777777664322 222222 2566777777776654322111 00 0000000111
Q ss_pred Hhhhcc-ccceeeecCCCCC--CC----cccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCc
Q 004225 150 FLQRLH-TMKVLQIGGYSAS--LP----YEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTS 222 (767)
Q Consensus 150 ~~~~l~-~L~~L~l~~~~~~--~~----~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~ 222 (767)
.+..++ +|+.|.++++... .+ ...++.++.+.+.++.- ..........+++|++|+++++......+.....
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 440 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE-EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc-ccccCHHHhcCCCCCEEECcCCcccCcccHHHhc
Confidence 123333 4444444443220 00 00133455555555432 2111223334566666666665433333334455
Q ss_pred CCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCC
Q 004225 223 FQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGN 302 (767)
Q Consensus 223 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 302 (767)
+++|++|++++|......+.. +..+++|++|++++|.-...++..... +++|+.|+++++.--..++.
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~L~~N~l~~~~p~-- 508 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQE--LMYVKTLETLILDFNDLTGEIPSGLSN--------CTNLNWISLSNNRLTGEIPK-- 508 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGGGG--------CTTCCEEECCSSCCCSCCCG--
T ss_pred CCCCCEEECCCCcccCcCCHH--HcCCCCceEEEecCCcccCcCCHHHhc--------CCCCCEEEccCCccCCcCCh--
Confidence 666666666666543333221 345666666666666533333333322 67777777777654434442
Q ss_pred ccccCCccceEeecCCCCcccccccCCCCcccchhhccc
Q 004225 303 CAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHG 341 (767)
Q Consensus 303 ~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~ 341 (767)
....+++|++|++++|.-...+|......++|+.+++++
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 234577777888777754445666555556677777765
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.65 E-value=5.1e-15 Score=166.76 Aligned_cols=365 Identities=12% Similarity=0.118 Sum_probs=270.2
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGG 438 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 438 (767)
.+|.+...+.++++.++..|+..|..++ .... ......+++.+..++.+++ ..+|..|+.++..++...........
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~~~~~~~ 281 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGPEITKTD 281 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCcccchhH
Confidence 3777888888889999999999999888 2222 2233457888888888877 89999999999999871111122345
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchh-HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD-RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPF 517 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 517 (767)
+++.++.+++++++.+|..|+++++.++...+.. +........++.+..++ .++++.+|..+++++..++..-. ..
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~--~~ 358 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG--KD 358 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC--HH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh--Hh
Confidence 7899999999999999999999999998654321 11122334677888888 88899999999999999875321 11
Q ss_pred cchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhcc-
Q 004225 518 DQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKG- 596 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~- 596 (767)
.....++|.+..++++++++++..++.++..+........ ....++|.+..++.+.+. .++..++.+++.++..
T Consensus 359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~~~d~~~--~vr~~~~~~l~~l~~~~ 433 (588)
T 1b3u_A 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKW--RVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHHHTCSSH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHc
Confidence 2235678899999999999999999999988875432211 112478889999988888 8999999999988742
Q ss_pred -CCcceeeh-------------hhhHHHHHHHhhhccC-CHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhc
Q 004225 597 -DGFLTQCT-------------GIAKEACRTISNITAG-NREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 597 -~~~~~~~l-------------~v~~~a~~~l~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~ 661 (767)
.+.....+ .++..|+.+++.++.. .++ .....++|.+..++.+.+..+|..++++++.++.
T Consensus 434 ~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 434 GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp CGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 11111111 6889999999988762 121 1223578888888888899999999999999986
Q ss_pred CCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC
Q 004225 662 GGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH 741 (767)
Q Consensus 662 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~ 741 (767)
....+ .....+++.|...++++++.+|..+++++..+....+. ..+ ....++.+..+..+
T Consensus 510 ~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---------------~~~-~~~~~p~l~~l~~d 569 (588)
T 1b3u_A 510 VCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---------------STL-QSEVKPILEKLTQD 569 (588)
T ss_dssp HHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH---------------HHH-HHHHHHHHHHHTTC
T ss_pred hcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch---------------hhh-HHHHHHHHHHHcCC
Confidence 42111 12345899999999999999999999999999864321 111 23456778888899
Q ss_pred CChHHHHHHHHHHHHhc
Q 004225 742 DSNGICEKAVKILEIYW 758 (767)
Q Consensus 742 ~~~~v~~~a~~~l~~~~ 758 (767)
++++|+..|.+++..+-
T Consensus 570 ~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 570 QDVDVKYFAQEALTVLS 586 (588)
T ss_dssp SSHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHhh
Confidence 99999999999998764
No 46
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.65 E-value=1.8e-15 Score=174.94 Aligned_cols=250 Identities=14% Similarity=0.065 Sum_probs=120.4
Q ss_pred ccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCC
Q 004225 60 NIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLG 139 (767)
Q Consensus 60 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 139 (767)
.+..+++|++|+++++.-....+. ..+++|++|++.+|..... .+..+. ..+++|++|++++|......
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~L~~n~l~~~-ip~~~~-~~~~~L~~L~Ls~n~l~~~~---- 310 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAENKFTGE-IPDFLS-GACDTLTGLDLSGNHFYGAV---- 310 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCC-----CCCTTCCEEECCSSEEEES-CCCCSC-TTCTTCSEEECCSSEEEECC----
T ss_pred HHhcCCCCCEEECCCCcccCccCc-----cccCCCCEEECcCCccCCc-cCHHHH-hhcCcCCEEECcCCcCCCcc----
Confidence 344455666666655532222221 2456666666666542222 111111 12466777777766543221
Q ss_pred CcchhcchhhHhhhccccceeeecCCCC--CCC---cccccCCceeeeeecccccchhhccccc----------------
Q 004225 140 DERTILSLGDFLQRLHTMKVLQIGGYSA--SLP---YEKVENGMWVEIREAFHLEHILIRESSV---------------- 198 (767)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~---~~~~~~l~~l~i~~~~~l~~~~~~~~~~---------------- 198 (767)
...+.++++|+.|.++++.. ..+ +..++.|+.|.+.++.-...+ +.....
T Consensus 311 --------p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 311 --------PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL-PESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp --------CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC-CTTHHHHTTTCSEEECCSSEEE
T ss_pred --------chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc-cHHHHhhhcCCcEEEccCCCcC
Confidence 12345556666666665543 222 234455555555555321111 111111
Q ss_pred -----------cccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhc
Q 004225 199 -----------TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIV 267 (767)
Q Consensus 199 -----------~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 267 (767)
+++|++|++.++.....++.....+++|++|++++|...... +.. +..+++|++|++.+|.-...++
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~-l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSS-LGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC-CGG-GGGCTTCCEEECCSSCCCSCCC
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc-cHH-HhcCCCCCEEECCCCcccCcCC
Confidence 334555555444333233333444555555555555332222 211 2345556666665554332333
Q ss_pred cccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhccc
Q 004225 268 QGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHG 341 (767)
Q Consensus 268 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~ 341 (767)
..... +++|+.|+++++.--..++. ....+++|++|++.+|.-...+|......++|+.+++++
T Consensus 460 ~~~~~--------l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 460 QELMY--------VKTLETLILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp GGGGG--------CTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred HHHcC--------CCCceEEEecCCcccCcCCH--HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 32222 56677777766643333332 234567777777777754445565555556677777665
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=2.4e-15 Score=154.85 Aligned_cols=224 Identities=18% Similarity=0.248 Sum_probs=116.7
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
.++++.|+++++. +..+|+ .+ ..+++|++|+++++. +..+ +..+..+++|++|+++++. ++.+|..
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~-~l-~~l~~L~~L~L~~n~-l~~l---------p~~~~~l~~L~~L~Ls~n~-l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPD-QA-FRLSHLQHMTIDAAG-LMEL---------PDTMQQFAGLETLTLARNP-LRALPAS 145 (328)
T ss_dssp STTCCEEEEESSC-CSSCCS-CG-GGGTTCSEEEEESSC-CCCC---------CSCGGGGTTCSEEEEESCC-CCCCCGG
T ss_pred ccceeEEEccCCC-chhcCh-hh-hhCCCCCEEECCCCC-ccch---------hHHHhccCCCCEEECCCCc-cccCcHH
Confidence 4667778887764 555532 22 357778888877764 3333 3345557777777777753 4445432
Q ss_pred CCcccCCCCccEEEeccCCccccccccccc------ccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccc
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTTSIFT------ERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMK 158 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 158 (767)
...+++|+.|++++|.........+.. ...+++|++|++++|... .+ ...+.+
T Consensus 146 ---l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l------------p~~l~~----- 204 (328)
T 4fcg_A 146 ---IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL------------PASIAN----- 204 (328)
T ss_dssp ---GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CC------------CGGGGG-----
T ss_pred ---HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cc------------hHhhcC-----
Confidence 456777777777777655443221110 012556666666555321 10 011223
Q ss_pred eeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccch
Q 004225 159 VLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLK 238 (767)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 238 (767)
+++|++|+++++.. ..++.....+++|++|++++|...+
T Consensus 205 ----------------------------------------l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 205 ----------------------------------------LQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALR 243 (328)
T ss_dssp ----------------------------------------CTTCCEEEEESSCC-CCCCGGGGGCTTCCEEECTTCTTCC
T ss_pred ----------------------------------------CCCCCEEEccCCCC-CcCchhhccCCCCCEEECcCCcchh
Confidence 34555555544332 2233334445555555555555544
Q ss_pred hhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeec
Q 004225 239 IVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVD 316 (767)
Q Consensus 239 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~ 316 (767)
.++.. +..+++|++|++++|.....++..... +++|+.|++++|+.++.++.. ...+++|+.+.+.
T Consensus 244 ~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~~~~--------l~~L~~L~L~~n~~~~~iP~~--l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 244 NYPPI--FGGRAPLKRLILKDCSNLLTLPLDIHR--------LTQLEKLDLRGCVNLSRLPSL--IAQLPANCIILVP 309 (328)
T ss_dssp BCCCC--TTCCCCCCEEECTTCTTCCBCCTTGGG--------CTTCCEEECTTCTTCCCCCGG--GGGSCTTCEEECC
T ss_pred hhHHH--hcCCCCCCEEECCCCCchhhcchhhhc--------CCCCCEEeCCCCCchhhccHH--HhhccCceEEeCC
Confidence 44322 234555566666555555544443333 556666666666655555532 3445555555543
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=8.7e-15 Score=159.01 Aligned_cols=297 Identities=14% Similarity=0.150 Sum_probs=163.9
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
.++|++|+++++. +..+++ ..+..+++|++|+++++.-...+. +..+..+++|++|+++++. +......
T Consensus 29 ~~~l~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~--------~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 97 (455)
T 3v47_A 29 PAHVNYVDLSLNS-IAELNE-TSFSRLQDLQFLKVEQQTPGLVIR--------NNTFRGLSSLIILKLDYNQ-FLQLETG 97 (455)
T ss_dssp CTTCCEEECCSSC-CCEECT-TTTSSCTTCCEEECCCCSTTCEEC--------TTTTTTCTTCCEEECTTCT-TCEECTT
T ss_pred CCccCEEEecCCc-cCcCCh-hHhccCccccEEECcCCcccceEC--------cccccccccCCEEeCCCCc-cCccChh
Confidence 3568888888864 555533 334577888888887775322221 1234556777777777654 3333222
Q ss_pred CCcccCCCCccEEEeccCCcccccc-cccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeec
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRT-TSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIG 163 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (767)
. ...+++|++|++++|....... ...+ ..+++|++|++++|......+. ..+.++++|+.|.++
T Consensus 98 ~--~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-----------~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 98 A--FNGLANLEVLTLTQCNLDGAVLSGNFF--KPLTSLEMLVLRDNNIKKIQPA-----------SFFLNMRRFHVLDLT 162 (455)
T ss_dssp T--TTTCTTCCEEECTTSCCBTHHHHSSTT--TTCTTCCEEECCSSBCCSCCCC-----------GGGGGCTTCCEEECT
T ss_pred h--ccCcccCCEEeCCCCCCCccccCcccc--cCcccCCEEECCCCccCccCcc-----------cccCCCCcccEEeCC
Confidence 2 3456677777777664322111 0112 2466677777766653221110 113445555555555
Q ss_pred CCCCCCC----c----------------------------------ccccCCceeeeeecccc----------------c
Q 004225 164 GYSASLP----Y----------------------------------EKVENGMWVEIREAFHL----------------E 189 (767)
Q Consensus 164 ~~~~~~~----~----------------------------------~~~~~l~~l~i~~~~~l----------------~ 189 (767)
++..... + ..+.+++.|.++++.-. +
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred CCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccccee
Confidence 4432100 0 01133455555444211 1
Q ss_pred chhhcc----------------------ccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhh
Q 004225 190 HILIRE----------------------SSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAK 247 (767)
Q Consensus 190 ~~~~~~----------------------~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 247 (767)
.+.+.. ....++|++|+++++......+.....+++|++|++++|. ++...+.. +.
T Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~ 320 (455)
T 3v47_A 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNA-FW 320 (455)
T ss_dssp EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT-TT
T ss_pred eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhH-hc
Confidence 110000 0012467777777665443333345678888888888875 33443322 45
Q ss_pred ccccCcEEeEccccccchhccc-cccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccc
Q 004225 248 TLVRLRYMKIKSCDRITEIVQG-DDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSE 326 (767)
Q Consensus 248 ~l~~L~~L~i~~c~~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~ 326 (767)
++++|++|++++|. +..++.. ... +++|+.|+++++ +++.+... ....+++|++|++.++ .++.+|.
T Consensus 321 ~l~~L~~L~Ls~N~-l~~~~~~~~~~--------l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 321 GLTHLLKLNLSQNF-LGSIDSRMFEN--------LDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp TCTTCCEEECCSSC-CCEECGGGGTT--------CTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CcccCCEEECCCCc-cCCcChhHhcC--------cccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCH
Confidence 68888999988875 4444322 222 789999999987 44555322 2356899999999987 5666766
Q ss_pred cC-CCCcccchhhccc
Q 004225 327 GK-LSTPKLHKVERHG 341 (767)
Q Consensus 327 ~~-~~~~~L~~l~i~~ 341 (767)
.. ...++|+.+++++
T Consensus 389 ~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHT 404 (455)
T ss_dssp TTTTTCTTCCEEECCS
T ss_pred hHhccCCcccEEEccC
Confidence 54 3456788888887
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.64 E-value=4.8e-15 Score=167.42 Aligned_cols=296 Identities=16% Similarity=0.162 Sum_probs=200.5
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
+|++|+++++. +..++ ...+..+++|++|+++++. +.++ +..+..+++|++|++.++. +...+...
T Consensus 255 ~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~l---------p~~l~~l~~L~~L~l~~n~-l~~~~~~~- 320 (606)
T 3t6q_A 255 SVESINLQKHY-FFNIS-SNTFHCFSGLQELDLTATH-LSEL---------PSGLVGLSTLKKLVLSANK-FENLCQIS- 320 (606)
T ss_dssp EEEEEECTTCC-CSSCC-TTTTTTCTTCSEEECTTSC-CSCC---------CSSCCSCTTCCEEECTTCC-CSBGGGGC-
T ss_pred ceeEEEeecCc-cCccC-HHHhccccCCCEEeccCCc-cCCC---------ChhhcccccCCEEECccCC-cCcCchhh-
Confidence 68888998874 56663 3445688999999999884 5544 4556778999999999874 44443322
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
...+++|++|++++|..........+ ..+++|++|++++|...... .....+..+++|+.|.++++.
T Consensus 321 -~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~----------~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 321 -ASNFPSLTHLSIKGNTKRLELGTGCL--ENLENLRELDLSHDDIETSD----------CCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp -GGGCTTCSEEECCSCSSCCBCCSSTT--TTCTTCCEEECCSSCCCEEE----------ESTTTTTTCTTCCEEECCSCS
T ss_pred -hhccCcCCEEECCCCCcccccchhhh--hccCcCCEEECCCCcccccc----------CcchhcccCCCCCEEECCCCc
Confidence 46789999999999875544333333 36899999999987643220 012236678899999999876
Q ss_pred C----CCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhc-
Q 004225 167 A----SLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVL- 241 (767)
Q Consensus 167 ~----~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~- 241 (767)
. ...+..++.++.+.+.++.-...........+++|++|+++++......+.....+++|++|++++|+..+..+
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 467 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC
T ss_pred CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc
Confidence 4 22344577889999888763322212224567899999999876544334446778999999999987544322
Q ss_pred CchhhhccccCcEEeEccccccchhcc-ccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCC
Q 004225 242 TSLIAKTLVRLRYMKIKSCDRITEIVQ-GDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPD 320 (767)
Q Consensus 242 ~~~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 320 (767)
....+..+++|++|++++|. +..++. .... +++|+.|+++++. ++..... ....+++| +|++++| .
T Consensus 468 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~--------l~~L~~L~Ls~N~-l~~~~~~-~l~~l~~L-~L~L~~N-~ 534 (606)
T 3t6q_A 468 KTNSLQTLGRLEILVLSFCD-LSSIDQHAFTS--------LKMMNHVDLSHNR-LTSSSIE-ALSHLKGI-YLNLASN-H 534 (606)
T ss_dssp SSCGGGGCTTCCEEECTTSC-CCEECTTTTTT--------CTTCCEEECCSSC-CCGGGGG-GGTTCCSC-EEECCSS-C
T ss_pred cchhhccCCCccEEECCCCc-cCccChhhhcc--------ccCCCEEECCCCc-cCcCChh-HhCccccc-EEECcCC-c
Confidence 22335678999999999986 444433 2333 8999999999874 4444321 23567888 9999988 4
Q ss_pred ccccccc-CCCCcccchhhcccc
Q 004225 321 MKIFSEG-KLSTPKLHKVERHGE 342 (767)
Q Consensus 321 l~~~~~~-~~~~~~L~~l~i~~~ 342 (767)
++.++.. ....++|+.++++|.
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTC
T ss_pred ccccCHhhcccCCCCCEEeCCCC
Confidence 5544443 223457888888873
No 50
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.64 E-value=3.5e-15 Score=168.13 Aligned_cols=364 Identities=12% Similarity=0.073 Sum_probs=270.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
+|.+.+.+.++++.++..|+..|..++ ....+ .....+++.+..++++++ +.+|..|+.+|..++...........+
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-NVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-HHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-hHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 677778888999999999999999998 32222 334578899999998888 899999999999998711111222357
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCc--
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPF-- 517 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~-- 517 (767)
+|.+..+++++++.+|..|+.+++.++...+. .......++.+++++ .++++.+|..+++++..++...+....
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 319 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCREN 319 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhhh
Confidence 88999999999999999999999999853221 122345788999999 788999999999999999876432211
Q ss_pred cchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccC
Q 004225 518 DQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGD 597 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~ 597 (767)
.....++|.+..++++.++.++..+++++..++..-.... ....++|.+..++++.+. +++..++.+++.+....
T Consensus 320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~--~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN---TIEHLLPLFLAQLKDECP--EVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH---HHHHTHHHHHHHHTCSCH--HHHHHHHTTCHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH---HHHHHHHHHHHHhCCCch--HHHHHHHHHHHHHHHhc
Confidence 3456788999999999999999999999999875422211 122478999999998887 99999998888776432
Q ss_pred Cc--ceeeh-------------hhhHHHHHHHhhhccC-CHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhc
Q 004225 598 GF--LTQCT-------------GIAKEACRTISNITAG-NREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 598 ~~--~~~~l-------------~v~~~a~~~l~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~ 661 (767)
.. ..+.+ .++..++.+++.++.. ..+ .+...+++.+...+.+.+..||..|+.+++.++.
T Consensus 395 ~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 470 (588)
T 1b3u_A 395 GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 11 00000 5677777777766541 000 1112357888888888899999999999999986
Q ss_pred CCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC
Q 004225 662 GGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH 741 (767)
Q Consensus 662 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~ 741 (767)
...++. ....+++.|..+..+++..+|..+++++..+....+.. .+ ....++.+...+.+
T Consensus 471 ~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~-----~~~~~~~l~~~l~d 530 (588)
T 1b3u_A 471 KFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------IT-----TKHMLPTVLRMAGD 530 (588)
T ss_dssp HHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HH-----HHHTHHHHHHGGGC
T ss_pred HhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HH-----HHHHHHHHHhhCCC
Confidence 433321 22357888888888999999999999999998753321 11 23457888888999
Q ss_pred CChHHHHHHHHHHHHhcC
Q 004225 742 DSNGICEKAVKILEIYWS 759 (767)
Q Consensus 742 ~~~~v~~~a~~~l~~~~~ 759 (767)
++++|+..+.+++..++.
T Consensus 531 ~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 531 PVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp SCHHHHHHHHHHHHHHGG
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 999999999999998864
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=1.3e-14 Score=157.71 Aligned_cols=279 Identities=15% Similarity=0.207 Sum_probs=137.1
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|++++|. +..+++ +..+++|++|+++++. +..+ ..+..+++|++|++.++ .+++++.
T Consensus 66 ~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~----------~~~~~l~~L~~L~L~~n-~l~~~~~ 129 (466)
T 1o6v_A 66 YLNNLTQINFSNNQ-LTDITP---LKNLTKLVDILMNNNQ-IADI----------TPLANLTNLTGLTLFNN-QITDIDP 129 (466)
T ss_dssp GCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC----------GGGTTCTTCCEEECCSS-CCCCCGG
T ss_pred hhcCCCEEECCCCc-cCCchh---hhccccCCEEECCCCc-cccC----------hhhcCCCCCCEEECCCC-CCCCChH
Confidence 47788888888874 555543 4577888888887764 3332 11445666666666665 2333332
Q ss_pred CCCcccCCCCccEEEeccCCccccccc-----------------ccccccccCCCceeeeCCcccccccccCCCcchhcc
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTT-----------------SIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILS 146 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-----------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 146 (767)
...+++|++|++++|.. ..... ...+...+++|++|++++|... ..
T Consensus 130 ----~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~----------- 192 (466)
T 1o6v_A 130 ----LKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DI----------- 192 (466)
T ss_dssp ----GTTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CC-----------
T ss_pred ----HcCCCCCCEEECCCCcc-CCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CC-----------
Confidence 23456666666655431 11100 0001124455555555554321 10
Q ss_pred hhhHhhhccccceeeecCCCC--CCCcccccCCceeeeeecccccchhhcc----------------------ccccccc
Q 004225 147 LGDFLQRLHTMKVLQIGGYSA--SLPYEKVENGMWVEIREAFHLEHILIRE----------------------SSVTNNL 202 (767)
Q Consensus 147 ~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~i~~~~~l~~~~~~~----------------------~~~~~~L 202 (767)
..+..+++|+.|.++++.. ..+...+++|+.+.+.++. ++.+ +. ...+++|
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L 267 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKL 267 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred --hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCC-cccc--hhhhcCCCCCEEECCCCccccchhhhcCCCC
Confidence 1134445555555555432 2223334445555544432 2221 11 2223445
Q ss_pred cEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccccccccccc
Q 004225 203 VILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFR 282 (767)
Q Consensus 203 ~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 282 (767)
++|+++++.. ..+.+ ...+++|+.|++++|. ++.+++ ...+++|++|++++|. +..++. .. .++
T Consensus 268 ~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~--------~l~ 331 (466)
T 1o6v_A 268 TELKLGANQI-SNISP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNN-ISDISP-VS--------SLT 331 (466)
T ss_dssp SEEECCSSCC-CCCGG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSC-CSCCGG-GG--------GCT
T ss_pred CEEECCCCcc-Ccccc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCc-CCCchh-hc--------cCc
Confidence 5555544322 11111 3445555555555543 222222 2345666666666554 332222 11 167
Q ss_pred ccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhcccc
Q 004225 283 ELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 283 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~~ 342 (767)
+|+.|+++++ +++.++ ....+++|++|++.+|+ +...+. ....++|+.+++++.
T Consensus 332 ~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 332 KLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp TCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE
T ss_pred cCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC
Confidence 7777777766 344442 23467788888888774 333322 334456777777763
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=5.6e-15 Score=165.72 Aligned_cols=289 Identities=16% Similarity=0.181 Sum_probs=163.8
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
+++++.|++.++. +..+ |...+..+++|++|+++++. +..+. +..+..+++|++|+++++. +..++..
T Consensus 50 l~~l~~l~l~~~~-l~~l-p~~~~~~l~~L~~L~L~~n~-l~~~~--------~~~~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDLQ-IEEID--------TYAFAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GCCCSEEEESSCE-ESEE-CTHHHHHCCCCSEEECTTSC-CCEEC--------TTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCCceEEEeeCCC-CCCc-CHHHHccCCCCcEEECCCCC-CCCCC--------hHHhcCCCCCCEEECCCCc-CCCCCHH
Confidence 4667777777763 5555 33444567788888887764 55441 1245567778888887764 5555443
Q ss_pred CCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecC
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGG 164 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (767)
. ...+++|+.|++++|. +....+..+ ..+++|++|++++|......+ ..+..+++|+.|.+++
T Consensus 118 ~--~~~l~~L~~L~L~~n~-l~~l~~~~~--~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 118 V--FQNVPLLTVLVLERND-LSSLPRGIF--HNTPKLTTLSMSNNNLERIED------------DTFQATTSLQNLQLSS 180 (597)
T ss_dssp T--TTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCBCCT------------TTTTTCTTCCEEECTT
T ss_pred H--HcCCCCCCEEEeeCCC-CCCCCHHHh--ccCCCCCEEEeeCCcCCCCCh------------hhhhcCCcCcEEECcC
Confidence 2 3457778888887764 333333333 257778888877765422211 1245566777777776
Q ss_pred CCC-CCCcccccCCceeeeeecccccch---------hhc-------cccccccccEEEecCCCccccccCCCCcCCCCC
Q 004225 165 YSA-SLPYEKVENGMWVEIREAFHLEHI---------LIR-------ESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLT 227 (767)
Q Consensus 165 ~~~-~~~~~~~~~l~~l~i~~~~~l~~~---------~~~-------~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~ 227 (767)
+.. ..+...++.++.+.+.++. +..+ .+. ....+++|++|+++++... . +.....+++|+
T Consensus 181 N~l~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~-~-~~~l~~l~~L~ 257 (597)
T 3oja_B 181 NRLTHVDLSLIPSLFHANVSYNL-LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-D-TAWLLNYPGLV 257 (597)
T ss_dssp SCCSBCCGGGCTTCSEEECCSSC-CSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCC-C-CGGGGGCTTCS
T ss_pred CCCCCcChhhhhhhhhhhcccCc-cccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCC-C-ChhhccCCCCC
Confidence 653 3334445555555554432 1111 000 0112345666666655422 2 23345677777
Q ss_pred EEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccC
Q 004225 228 NMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKF 307 (767)
Q Consensus 228 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 307 (767)
.|++++|. +...++.. +..+++|++|++++|. +..++..... +|+|+.|+++++ .++.++.. ...+
T Consensus 258 ~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~--------l~~L~~L~Ls~N-~l~~i~~~--~~~l 323 (597)
T 3oja_B 258 EVDLSYNE-LEKIMYHP-FVKMQRLERLYISNNR-LVALNLYGQP--------IPTLKVLDLSHN-HLLHVERN--QPQF 323 (597)
T ss_dssp EEECCSSC-CCEEESGG-GTTCSSCCEEECTTSC-CCEEECSSSC--------CTTCCEEECCSS-CCCCCGGG--HHHH
T ss_pred EEECCCCc-cCCCCHHH-hcCccCCCEEECCCCC-CCCCCccccc--------CCCCcEEECCCC-CCCccCcc--cccC
Confidence 77777764 33333332 3467777777777754 4444443333 678888888776 34455432 3457
Q ss_pred CccceEeecCCCCcccccccCCCCcccchhhcccc
Q 004225 308 PSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 308 ~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~~ 342 (767)
++|++|++++|+ +..+|.. ..+.|+.+++++.
T Consensus 324 ~~L~~L~L~~N~-l~~~~~~--~~~~L~~L~l~~N 355 (597)
T 3oja_B 324 DRLENLYLDHNS-IVTLKLS--THHTLKNLTLSHN 355 (597)
T ss_dssp TTCSEEECCSSC-CCCCCCC--TTCCCSEEECCSS
T ss_pred CCCCEEECCCCC-CCCcChh--hcCCCCEEEeeCC
Confidence 788888888774 4444432 2346777777763
No 53
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.63 E-value=7.2e-15 Score=172.65 Aligned_cols=371 Identities=12% Similarity=0.075 Sum_probs=258.7
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHH---
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVI--- 435 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--- 435 (767)
-+.+++.+.++++.++..++..+..++ .... .-.++++.|++.+.+++ +..+..|+.+|..++.+....+.
T Consensus 92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~---~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~ 167 (852)
T 4fdd_A 92 KSECLNNIGDSSPLIRATVGILITTIASKGELQ---NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDV 167 (852)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT---TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc---ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhh
Confidence 445677788889999999999999988 2110 12357899999999988 89999999999999982222211
Q ss_pred ----hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCC
Q 004225 436 ----DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 436 ----~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 511 (767)
-..++|.+++.+.++++.+|..|++++.++....+...... -...++.++..+ .++++++++.+++++.+++..
T Consensus 168 ~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 168 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp SSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHh
Confidence 12357778888888999999999999998886544321100 113667778877 788999999999999999976
Q ss_pred CCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHh---cCcHHHHHHHh-----------cC--
Q 004225 512 KPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIE---ADVCPRLVKLL-----------LH-- 575 (767)
Q Consensus 512 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~lL-----------~~-- 575 (767)
.+..-.....++++.+...+++.+++++..+++.+..+++.... .. ... ..++|.++..+ .+
T Consensus 246 ~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~-~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ 323 (852)
T 4fdd_A 246 RMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC-KD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323 (852)
T ss_dssp CHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH-HH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH-HH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcc
Confidence 54332234457889999999999999999999999999876421 11 111 13567777776 23
Q ss_pred ---------CCCCCcccchHHHHHhhhhccCCcc-eeeh-------------hhhHHHHHHHhhhccCCHHHHHHHHHcC
Q 004225 576 ---------PLPFPFGLTPPLWTVRYIVKGDGFL-TQCT-------------GIAKEACRTISNITAGNREQIQVVIDAG 632 (767)
Q Consensus 576 ---------~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l-------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~ 632 (767)
.+. .++..|..++..++...+.. ...+ .+|..|++++++++.+..+.....+ .+
T Consensus 324 ed~~~dd~~~~~--~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~ 400 (852)
T 4fdd_A 324 GGSGGDDTISDW--NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PE 400 (852)
T ss_dssp ---------CCC--CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HH
T ss_pred cccccccccccc--hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HH
Confidence 122 56778888888887533211 1111 8899999999999998776554333 35
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNT 712 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~ 712 (767)
+++.++..++++++.||..|+|++++++... ......-.-.++++.|+..+.++++.++..|+++|.+++...+..
T Consensus 401 ~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~-~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~--- 476 (852)
T 4fdd_A 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWV-VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE--- 476 (852)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH-HHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG---
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh---
Confidence 7899999999999999999999999998631 110000011246788888888899999999999999999865432
Q ss_pred CCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 713 GTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 713 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
..+|...+ ++.|..++...+......+.+++..+
T Consensus 477 ------l~~~l~~l-----l~~L~~~l~~~~~~~~~~~~~ai~~l 510 (852)
T 4fdd_A 477 ------LVPYLAYI-----LDTLVFAFSKYQHKNLLILYDAIGTL 510 (852)
T ss_dssp ------GGGGHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ------hHhHHHHH-----HHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 12233333 55555555554444444444444443
No 54
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.63 E-value=2.3e-14 Score=161.80 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=32.9
Q ss_pred ccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccc
Q 004225 198 VTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDR 262 (767)
Q Consensus 198 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 262 (767)
.+++|++|+++++. +..++.....+++|++|++++|.. +..++.. +..+++|++|++++|..
T Consensus 276 ~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l-~~~~~~~-~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 276 CFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKF-ENLCQIS-ASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp TCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCC-SBGGGGC-GGGCTTCSEEECCSCSS
T ss_pred cccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCc-CcCchhh-hhccCcCCEEECCCCCc
Confidence 35566666666553 334444455566666666666542 2222211 34566666666666543
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=8.1e-15 Score=164.40 Aligned_cols=279 Identities=13% Similarity=0.089 Sum_probs=182.8
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|+++++. +..+++. .+..+++|++|+++++. +..+. +..+..+++|++|+++++ .++.++.
T Consensus 73 ~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~--------~~~~~~l~~L~~L~L~~n-~l~~l~~ 140 (597)
T 3oja_B 73 SFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNA-IRYLP--------PHVFQNVPLLTVLVLERN-DLSSLPR 140 (597)
T ss_dssp HCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CCCCC--------TTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCCCcEEECCCCC-CCCCChH-HhcCCCCCCEEECCCCc-CCCCC--------HHHHcCCCCCCEEEeeCC-CCCCCCH
Confidence 47899999999985 6666433 34689999999999885 55431 234567899999999987 4666665
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCccccccccc-CCCcchh---cchhhHhhhccccce
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYH-LGDERTI---LSLGDFLQRLHTMKV 159 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~---~~~~~~~~~l~~L~~ 159 (767)
.. ...+++|+.|++++|. +....+..+ ..+++|++|++++|........ ++..... ......+...++|+.
T Consensus 141 ~~--~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~ 215 (597)
T 3oja_B 141 GI--FHNTPKLTTLSMSNNN-LERIEDDTF--QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEE 215 (597)
T ss_dssp TT--TTTCTTCCEEECCSSC-CCBCCTTTT--TTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSE
T ss_pred HH--hccCCCCCEEEeeCCc-CCCCChhhh--hcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhhe
Confidence 43 3568999999999885 333333334 3689999999998764221000 0000000 000000112234555
Q ss_pred eeecCCCC-CCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccch
Q 004225 160 LQIGGYSA-SLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLK 238 (767)
Q Consensus 160 L~l~~~~~-~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 238 (767)
|.++++.. ..+......++.|.+.++. +... .....+++|++|+++++......+..+..+++|+.|+|++|. ++
T Consensus 216 L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~ 291 (597)
T 3oja_B 216 LDASHNSINVVRGPVNVELTILKLQHNN-LTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LV 291 (597)
T ss_dssp EECCSSCCCEEECSCCSCCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CC
T ss_pred eeccCCcccccccccCCCCCEEECCCCC-CCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CC
Confidence 55555443 1111223467777777765 3332 334567999999999876544434456789999999999974 45
Q ss_pred hhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCC
Q 004225 239 IVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDC 318 (767)
Q Consensus 239 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 318 (767)
.++.. ...+++|++|++++|. +..++..... +++|+.|++++++ +..++ ...+++|++|++.++
T Consensus 292 ~l~~~--~~~l~~L~~L~Ls~N~-l~~i~~~~~~--------l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 292 ALNLY--GQPIPTLKVLDLSHNH-LLHVERNQPQ--------FDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHN 355 (597)
T ss_dssp EEECS--SSCCTTCCEEECCSSC-CCCCGGGHHH--------HTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSS
T ss_pred CCCcc--cccCCCCcEEECCCCC-CCccCccccc--------CCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCC
Confidence 55433 3568999999999986 5566655443 8999999999975 55555 346899999999998
Q ss_pred C
Q 004225 319 P 319 (767)
Q Consensus 319 ~ 319 (767)
+
T Consensus 356 ~ 356 (597)
T 3oja_B 356 D 356 (597)
T ss_dssp C
T ss_pred C
Confidence 6
No 56
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.63 E-value=9.3e-15 Score=165.01 Aligned_cols=269 Identities=13% Similarity=0.136 Sum_probs=186.6
Q ss_pred ccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccc
Q 004225 28 VSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMV 107 (767)
Q Consensus 28 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 107 (767)
+..+++|++|++.++. +..+ +.+..+++|++|++.+|.- ..+|. . .+++|++|++++|.....
T Consensus 281 ~~~l~~L~~L~l~~~~-~~~l----------~~l~~~~~L~~L~l~~n~l-~~lp~----~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVS-IKYL----------EDVPKHFKWQSLSIIRCQL-KQFPT----L-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CGGGTTCSEEEEESCC-CCCC----------CCCCTTCCCSEEEEESCCC-SSCCC----C-CCSSCCEEEEESCSSCEE
T ss_pred cccCCCCCEEEecCcc-chhh----------hhccccccCCEEEcccccC-ccccc----C-CCCccceeeccCCcCccc
Confidence 4678888888888875 4443 2455678899999998864 66662 3 688999999998865554
Q ss_pred cccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCC---CCCcccccCCceeeeee
Q 004225 108 RTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSA---SLPYEKVENGMWVEIRE 184 (767)
Q Consensus 108 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---~~~~~~~~~l~~l~i~~ 184 (767)
. +...+++|++|++++|..... ......+..+++|+.|.++++.. ...+..+++|+.+.+.+
T Consensus 344 ~-----~~~~l~~L~~L~ls~n~l~~~----------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 408 (606)
T 3vq2_A 344 F-----KKVALPSLSYLDLSRNALSFS----------GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408 (606)
T ss_dssp C-----CCCCCTTCCEEECCSSCEEEE----------EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTT
T ss_pred h-----hhccCCCCCEEECcCCccCCC----------cchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCC
Confidence 3 123688999999998763221 01123467788999999988764 22344567888888888
Q ss_pred cccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccc
Q 004225 185 AFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRIT 264 (767)
Q Consensus 185 ~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~ 264 (767)
+.-...........+++|++|+++++......+.....+++|++|++++|.......+.. ++.+++|++|++++|. +.
T Consensus 409 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~-l~ 486 (606)
T 3vq2_A 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQ-LE 486 (606)
T ss_dssp SEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CC
T ss_pred CccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECCCCc-CC
Confidence 763333211345567899999999887655444556788999999999986554333333 4678999999999986 44
Q ss_pred hhccc-cccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCCCc-ccchhhccc
Q 004225 265 EIVQG-DDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTP-KLHKVERHG 341 (767)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~-~L~~l~i~~ 341 (767)
.++.. ... +++|++|+++++ +++.+.. .....+++|++|++++|. ++.+|......+ +|+.+++++
T Consensus 487 ~~~~~~~~~--------l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 487 QISWGVFDT--------LHRLQLLNMSHN-NLLFLDS-SHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp EECTTTTTT--------CTTCCEEECCSS-CCSCEEG-GGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCS
T ss_pred ccChhhhcc--------cccCCEEECCCC-cCCCcCH-HHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccC
Confidence 44332 333 799999999988 4444422 123568999999999984 777887644444 588888887
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.63 E-value=2.7e-14 Score=161.23 Aligned_cols=112 Identities=16% Similarity=0.246 Sum_probs=55.7
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|++++|. +..+++ ..+..+++|++|+++++. +..+ .+..+..+++|++|+++++. +...+.
T Consensus 54 ~l~~L~~L~Ls~n~-l~~i~~-~~~~~l~~L~~L~Ls~n~-l~~~--------~p~~~~~l~~L~~L~L~~n~-l~~~~~ 121 (606)
T 3vq2_A 54 NFSELQWLDLSRCE-IETIED-KAWHGLHHLSNLILTGNP-IQSF--------SPGSFSGLTSLENLVAVETK-LASLES 121 (606)
T ss_dssp TCTTCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCCC--------CTTSSTTCTTCCEEECTTSC-CCCSSS
T ss_pred CCccCcEEeCCCCc-ccccCH-HHhhchhhcCEeECCCCc-cccc--------ChhhcCCcccCCEEEccCCc-cccccc
Confidence 34455555555542 333322 222445555555555543 2221 12344556677777776653 333332
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCccc
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHV 131 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 131 (767)
.. ...+++|++|++++|.......+..+ ..+++|++|++++|..
T Consensus 122 ~~--~~~l~~L~~L~L~~n~l~~~~lp~~~--~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 122 FP--IGQLITLKKLNVAHNFIHSCKLPAYF--SNLTNLVHVDLSYNYI 165 (606)
T ss_dssp SC--CTTCTTCCEEECCSSCCCCCCCCGGG--GTCTTCCEEECCSSCC
T ss_pred cc--cCCCCCCCEEeCCCCcccceechHhH--hhcCCCCEEEccCCcc
Confidence 22 34566777777776653321222223 2567777777776643
No 58
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.62 E-value=7.3e-15 Score=172.60 Aligned_cols=366 Identities=13% Similarity=0.094 Sum_probs=260.0
Q ss_pred hcCCCHHHHHHHHHHHHHhcC--C-ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHH
Q 004225 368 VWSDDSGLQLEATTWFRKLLL--P-PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIF 443 (767)
Q Consensus 368 l~s~~~~~~~~a~~~L~~l~~--~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L 443 (767)
+.+.++.+|..|+..|++... + ....-.+..+-+.+++.+.+++ +.+|..++.++..++. +... .-.+.++.+
T Consensus 57 ~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~--~wp~ll~~L 133 (852)
T 4fdd_A 57 LKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ--NWPDLLPKL 133 (852)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT--TCTTHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc--ccHHHHHHH
Confidence 357788999999999998871 1 1111223345567777788777 8999999999999998 4221 134678999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHH----hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 444 VKLLSSPSDDVREKAVWALGNIARSSPRDRDLVL----SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 444 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~----~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
++.+.++++.+++.++.+++.++...+.....-. -..+++.+++.+ .+++..+|..|++++.++....+......
T Consensus 134 ~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~~~ 212 (852)
T 4fdd_A 134 CSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALMLH 212 (852)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHHTS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999999999999999965443211100 012455666666 68899999999999998886543222223
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCc
Q 004225 520 VRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGF 599 (767)
Q Consensus 520 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~ 599 (767)
...+++.+..++.+++++++..+++++..++...++......+ ++++.+.+.+++.+. +++..|+..+..++.....
T Consensus 213 ~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~--~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDE--NVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSH--HHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcH--HHHHHHHHHHHHHhcchhH
Confidence 4578899999999999999999999999999876654433332 478888899998887 8999999888888643210
Q ss_pred ce-----------------------------------------eehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHH
Q 004225 600 LT-----------------------------------------QCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLV 638 (767)
Q Consensus 600 ~~-----------------------------------------~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~ 638 (767)
.. ..-.+++.|..+++.++...++ .++ ..+++.+.
T Consensus 290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~~l~ 365 (852)
T 4fdd_A 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILPLLK 365 (852)
T ss_dssp HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHH
Confidence 00 0002355555566555542111 111 13567777
Q ss_pred HHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCcccc
Q 004225 639 DLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRY 718 (767)
Q Consensus 639 ~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~ 718 (767)
+.+.+.++.+|..|++++++++.+. .+..... -.++++.++..++++++.||..|+|++.++.........
T Consensus 366 ~~l~~~~~~~R~aa~~alg~i~~~~-~~~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~------- 436 (852)
T 4fdd_A 366 ELLFHHEWVVKESGILVLGAIAEGC-MQGMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP------- 436 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHTTTTT-HHHHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcc-hHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-------
Confidence 7888889999999999999999874 4443332 245789999999999999999999999999975432110
Q ss_pred ccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 719 FNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 719 ~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
..+. .+.++.+.+.+.++++.|+..|.+++.++..
T Consensus 437 -~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 437 -DTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp -TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred -HHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 1122 2346777788888999999999999988753
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1.3e-14 Score=166.60 Aligned_cols=309 Identities=14% Similarity=0.088 Sum_probs=162.1
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcce--EEeccchhhcccccCCCCccceeecccccccccc
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEE--LIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSF 81 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 81 (767)
.+++|++|+|++|.....+| ..+..+++|++|+++++..+.. ++.. -..+......+++|+.|+++++. +..+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L~~L~Ls~N~~lsg~~iP~~--i~~L~~~~~~l~~L~~L~Ls~N~-L~~i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLP--DFLYDLPELQSLNIACNRGISAAQLKAD--WTRLADDEDTGPKIQIFYMGYNN-LEEF 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCC--GGGGGCSSCCEEECTTCTTSCHHHHHHH--HHHHHHCTTTTTTCCEEECCSSC-CCBC
T ss_pred cCCCCCEEECcCCCCCccCh--HHHhCCCCCCEEECcCCCCcccccchHH--HHhhhhcccccCCccEEEeeCCc-CCcc
Confidence 68899999999997555553 3346899999999998863332 1000 00000122334566666666543 3344
Q ss_pred cC-CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCccccccccc-CCCcch-----------hcchh
Q 004225 82 CT-GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYH-LGDERT-----------ILSLG 148 (767)
Q Consensus 82 ~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~-----------~~~~~ 148 (767)
|. .. ...+++|+.|++++|..- . .+ .+ ..+++|++|++++|... .++. +..... ...+.
T Consensus 564 p~~~~--l~~L~~L~~L~Ls~N~l~-~-lp-~~--~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 564 PASAS--LQKMVKLGLLDCVHNKVR-H-LE-AF--GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp CCHHH--HTTCTTCCEEECTTSCCC-B-CC-CC--CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred CChhh--hhcCCCCCEEECCCCCcc-c-ch-hh--cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc
Confidence 33 01 234556666666555422 1 11 12 24555555555554432 1110 000000 00000
Q ss_pred hHhhhc--cccceeeecCCCCCCCcc---------cccCCceeeeeecccccchhhccccccccccEEEecCCCcccccc
Q 004225 149 DFLQRL--HTMKVLQIGGYSASLPYE---------KVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLV 217 (767)
Q Consensus 149 ~~~~~l--~~L~~L~l~~~~~~~~~~---------~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~ 217 (767)
..+..+ ++|+.|.++++...-... ...+|+.|.++++. +..+.......+++|++|+++++. +..++
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip 713 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNL-MTSIP 713 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCC-CSCCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCc-CCccC
Confidence 111111 235555555543311110 12255666666554 333311112245778888887653 33433
Q ss_pred CCCCc--------CCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEee
Q 004225 218 PPSTS--------FQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKL 289 (767)
Q Consensus 218 ~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 289 (767)
..... +++|+.|+|++| .++.++.......+++|+.|++++|. +..++..... +++|+.|++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~--------L~~L~~L~L 783 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLN--------SSQLKAFGI 783 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGG--------CTTCCEEEC
T ss_pred hHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhc--------CCCCCEEEC
Confidence 33222 237888888887 34455433211367888888888765 4445544433 788888888
Q ss_pred cCCC------CcccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhcccc
Q 004225 290 VDLE------RLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 290 ~~~~------~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~~ 342 (767)
++++ -...++. ....+++|++|++++|. +..+|.... ++|+.+++++.
T Consensus 784 s~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp CCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSC
T ss_pred CCCCCcccccccccChH--HHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCC
Confidence 7643 2233332 23468889999998884 477777643 47888888875
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=1.3e-14 Score=158.41 Aligned_cols=273 Identities=15% Similarity=0.192 Sum_probs=191.9
Q ss_pred CCCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccccccccc
Q 004225 3 CGIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFC 82 (767)
Q Consensus 3 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (767)
..+++|++|+|+++. +..+.+ ..+..+++|++|+++++. +..+. ...+..+++|++|+++++. +...+
T Consensus 53 ~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~--------~~~~~~l~~L~~L~Ls~n~-i~~~~ 120 (477)
T 2id5_A 53 ASFPHLEELELNENI-VSAVEP-GAFNNLFNLRTLGLRSNR-LKLIP--------LGVFTGLSNLTKLDISENK-IVILL 120 (477)
T ss_dssp TTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCSCC--------TTSSTTCTTCCEEECTTSC-CCEEC
T ss_pred cCCCCCCEEECCCCc-cCEeCh-hhhhCCccCCEEECCCCc-CCccC--------cccccCCCCCCEEECCCCc-cccCC
Confidence 458899999999984 666633 345689999999999875 55431 1234668999999999874 44443
Q ss_pred CCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeee
Q 004225 83 TGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQI 162 (767)
Q Consensus 83 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 162 (767)
... ...+++|++|+++++.. ....+..+ ..+++|++|++++|..... ....+.++++|+.|.+
T Consensus 121 ~~~--~~~l~~L~~L~l~~n~l-~~~~~~~~--~~l~~L~~L~l~~n~l~~~------------~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 121 DYM--FQDLYNLKSLEVGDNDL-VYISHRAF--SGLNSLEQLTLEKCNLTSI------------PTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTT--TTTCTTCCEEEECCTTC-CEECTTSS--TTCTTCCEEEEESCCCSSC------------CHHHHTTCTTCCEEEE
T ss_pred hhH--ccccccCCEEECCCCcc-ceeChhhc--cCCCCCCEEECCCCcCccc------------ChhHhcccCCCcEEeC
Confidence 332 45789999999998753 33333334 3789999999998863211 1234678899999999
Q ss_pred cCCCC----CCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccC-CCCcCCCCCEEEeccCccc
Q 004225 163 GGYSA----SLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVP-PSTSFQNLTNMVVSRCNNL 237 (767)
Q Consensus 163 ~~~~~----~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l 237 (767)
.++.. ...+..+..|+.|.+.++..+..+. .......+|++|+++++.. ..++. ....+++|++|+|+++. +
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l 260 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNP-I 260 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-TTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSC-C
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccC-cccccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCc-C
Confidence 98764 2234567899999999988777663 2233345899999998753 33332 35678999999999886 4
Q ss_pred hhhcCchhhhccccCcEEeEccccccchhccc-cccccccccccccccceEeecCCCCcccccCCCccccCCccceEeec
Q 004225 238 KIVLTSLIAKTLVRLRYMKIKSCDRITEIVQG-DDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVD 316 (767)
Q Consensus 238 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~ 316 (767)
+.+.... +..+++|++|+++++. +..+... ... +++|+.|+++++ .++.++.. ....+++|++|++.
T Consensus 261 ~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~--------l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 261 STIEGSM-LHELLRLQEIQLVGGQ-LAVVEPYAFRG--------LNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILD 328 (477)
T ss_dssp CEECTTS-CTTCTTCCEEECCSSC-CSEECTTTBTT--------CTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECC
T ss_pred CccChhh-ccccccCCEEECCCCc-cceECHHHhcC--------cccCCEEECCCC-cCceeCHh-HcCCCcccCEEEcc
Confidence 5554432 4678999999999876 4444332 222 799999999987 56666542 23467899999998
Q ss_pred CCC
Q 004225 317 DCP 319 (767)
Q Consensus 317 ~c~ 319 (767)
+++
T Consensus 329 ~N~ 331 (477)
T 2id5_A 329 SNP 331 (477)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 61
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.62 E-value=5.1e-15 Score=166.98 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=74.6
Q ss_pred CCCCccEEeeecCCCccc------------------cccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCC
Q 004225 4 GIQNLTRLTLSCCMNLRC------------------LFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFP 65 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~------------------l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 65 (767)
.+++|++|+++++. +.. +|..-.+..+++|++|++++|.-...+ +..+..++
T Consensus 204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~---------p~~l~~l~ 273 (636)
T 4eco_A 204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL---------PTFLKALP 273 (636)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC---------CTTTTTCS
T ss_pred cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC---------hHHHhcCC
Confidence 57889999999986 655 533221127899999999988643333 45667788
Q ss_pred ccceeeccccccccc--ccCCCCcccC------CCCccEEEeccCCcccccccc--cccccccCCCceeeeCCcccccc
Q 004225 66 QLQYLKMSDLEKFTS--FCTGDLDILE------FPSLKELRISKCPEFMVRTTS--IFTERVFPNLEKLKVDAKHVVTN 134 (767)
Q Consensus 66 ~L~~L~l~~~~~l~~--~~~~~~~~~~------~~~L~~L~l~~c~~l~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~ 134 (767)
+|++|+++++..++. +|.. ... +++|++|++++|..- . .+. .+ ..+++|++|++++|.....
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~---~~~L~~~~~l~~L~~L~L~~n~l~-~-ip~~~~l--~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDD---WQALADAPVGEKIQIIYIGYNNLK-T-FPVETSL--QKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHH---HHHHHHSGGGGTCCEEECCSSCCS-S-CCCHHHH--TTCTTCCEEECCSCCCEEE
T ss_pred CCCEEECcCCCCCccccchHH---HHhhhccccCCCCCEEECCCCcCC-c-cCchhhh--ccCCCCCEEeCcCCcCccc
Confidence 889998888764543 4422 222 378888888887533 2 222 23 3678888888887765433
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=1.9e-14 Score=152.61 Aligned_cols=279 Identities=13% Similarity=0.083 Sum_probs=180.4
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|+++++. +..+++ ..+..+++|++|+++++. +..+. +..+..+++|++|++.++ .++.++.
T Consensus 67 ~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~--------~~~~~~l~~L~~L~L~~n-~l~~l~~ 134 (390)
T 3o6n_A 67 SFRQVELLNLNDLQ-IEEIDT-YAFAYAHTIQKLYMGFNA-IRYLP--------PHVFQNVPLLTVLVLERN-DLSSLPR 134 (390)
T ss_dssp HCCCCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCCCC--------TTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred ccccCcEEECCCCc-ccccCh-hhccCCCCcCEEECCCCC-CCcCC--------HHHhcCCCCCCEEECCCC-ccCcCCH
Confidence 47899999999985 666633 344689999999999885 44431 234567899999999987 4666665
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCccccccccc-CCCcchh---cchhhHhhhccccce
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYH-LGDERTI---LSLGDFLQRLHTMKV 159 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~---~~~~~~~~~l~~L~~ 159 (767)
.. ...+++|++|++++|.. ....+..+ ..+++|++|+++++........ ++.-... ......+...++|+.
T Consensus 135 ~~--~~~l~~L~~L~L~~n~l-~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~ 209 (390)
T 3o6n_A 135 GI--FHNTPKLTTLSMSNNNL-ERIEDDTF--QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEE 209 (390)
T ss_dssp TT--TTTCTTCCEEECCSSCC-CBCCTTTT--SSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSE
T ss_pred HH--hcCCCCCcEEECCCCcc-CccChhhc--cCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceE
Confidence 42 24688999999998753 33333333 3688999999998764221000 0000000 000000111234555
Q ss_pred eeecCCCC-CCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccch
Q 004225 160 LQIGGYSA-SLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLK 238 (767)
Q Consensus 160 L~l~~~~~-~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 238 (767)
|.++++.. ..+......++.|.+.++. +... +....+++|++|+++++......+.....+++|++|+++++. ++
T Consensus 210 L~l~~n~l~~~~~~~~~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~ 285 (390)
T 3o6n_A 210 LDASHNSINVVRGPVNVELTILKLQHNN-LTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LV 285 (390)
T ss_dssp EECCSSCCCEEECCCCSSCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CC
T ss_pred EECCCCeeeeccccccccccEEECCCCC-Cccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-Cc
Confidence 55554432 1122223567777777764 3332 334557999999999876443334456788999999999974 55
Q ss_pred hhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCC
Q 004225 239 IVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDC 318 (767)
Q Consensus 239 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 318 (767)
.++.. ...+++|++|++++|. +..++..... +++|+.|++++++ ++.++. ..+++|++|++.++
T Consensus 286 ~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~~--------l~~L~~L~L~~N~-i~~~~~----~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 286 ALNLY--GQPIPTLKVLDLSHNH-LLHVERNQPQ--------FDRLENLYLDHNS-IVTLKL----STHHTLKNLTLSHN 349 (390)
T ss_dssp EEECS--SSCCTTCCEEECCSSC-CCCCGGGHHH--------HTTCSEEECCSSC-CCCCCC----CTTCCCSEEECCSS
T ss_pred ccCcc--cCCCCCCCEEECCCCc-ceecCccccc--------cCcCCEEECCCCc-cceeCc----hhhccCCEEEcCCC
Confidence 55433 3568999999999985 6666654433 8999999999875 666653 46899999999998
Q ss_pred C
Q 004225 319 P 319 (767)
Q Consensus 319 ~ 319 (767)
+
T Consensus 350 ~ 350 (390)
T 3o6n_A 350 D 350 (390)
T ss_dssp C
T ss_pred C
Confidence 5
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=3.3e-14 Score=154.57 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=107.1
Q ss_pred HhhhccccceeeecCCCC--CCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCC
Q 004225 150 FLQRLHTMKVLQIGGYSA--SLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLT 227 (767)
Q Consensus 150 ~~~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~ 227 (767)
.+..+++|+.|.++++.. ..++..++.|+.|.+.++. +..+ .....+++|++|+++++.. ..+. ....+++|+
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~ 312 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNI--SPLAGLTALTNLELNENQL-EDIS-PISNLKNLT 312 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCCC--GGGTTCTTCSEEECCSSCC-SCCG-GGGGCTTCS
T ss_pred hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-cCcc--ccccCCCccCeEEcCCCcc-cCch-hhcCCCCCC
Confidence 356778899998888764 3335667888999988875 4443 2245679999999998754 3333 367899999
Q ss_pred EEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccC
Q 004225 228 NMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKF 307 (767)
Q Consensus 228 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 307 (767)
.|++++|. +....+ ...+++|++|++++|. +..++ .... +++|+.|++++++- +.+.. ...+
T Consensus 313 ~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~-~l~~--------l~~L~~L~l~~n~l-~~~~~---~~~l 374 (466)
T 1o6v_A 313 YLTLYFNN-ISDISP---VSSLTKLQRLFFYNNK-VSDVS-SLAN--------LTNINWLSAGHNQI-SDLTP---LANL 374 (466)
T ss_dssp EEECCSSC-CSCCGG---GGGCTTCCEEECCSSC-CCCCG-GGTT--------CTTCCEEECCSSCC-CBCGG---GTTC
T ss_pred EEECcCCc-CCCchh---hccCccCCEeECCCCc-cCCch-hhcc--------CCCCCEEeCCCCcc-Cccch---hhcC
Confidence 99999985 444433 3579999999999985 55542 2222 89999999999854 44332 4578
Q ss_pred CccceEeecCCC
Q 004225 308 PSLERLVVDDCP 319 (767)
Q Consensus 308 ~~L~~L~i~~c~ 319 (767)
++|++|++.+|+
T Consensus 375 ~~L~~L~l~~n~ 386 (466)
T 1o6v_A 375 TRITQLGLNDQA 386 (466)
T ss_dssp TTCCEEECCCEE
T ss_pred CCCCEEeccCCc
Confidence 999999999984
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.1e-14 Score=167.16 Aligned_cols=301 Identities=13% Similarity=0.049 Sum_probs=160.9
Q ss_pred CCCCccEEeeecCCCccc------------------cccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCC
Q 004225 4 GIQNLTRLTLSCCMNLRC------------------LFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFP 65 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~------------------l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 65 (767)
.+++|++|+|+++. +.. +|+.-.+..+++|++|++++|.-...+ +..+..++
T Consensus 446 ~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i---------P~~l~~L~ 515 (876)
T 4ecn_A 446 RLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL---------PDFLYDLP 515 (876)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC---------CGGGGGCS
T ss_pred cCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC---------hHHHhCCC
Confidence 57899999999986 555 533221348999999999998644433 45677799
Q ss_pred ccceeeccccccccc--ccCC--CC--cccCCCCccEEEeccCCcccccccc--cccccccCCCceeeeCCccccccccc
Q 004225 66 QLQYLKMSDLEKFTS--FCTG--DL--DILEFPSLKELRISKCPEFMVRTTS--IFTERVFPNLEKLKVDAKHVVTNKYH 137 (767)
Q Consensus 66 ~L~~L~l~~~~~l~~--~~~~--~~--~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~ 137 (767)
+|+.|+++++..++. +|.. .+ ....+++|+.|++++|..- . .+. .+ ..+++|++|++++|... .++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~-ip~~~~l--~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-E-FPASASL--QKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-B-CCCHHHH--TTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-c-cCChhhh--hcCCCCCEEECCCCCcc-cch-
Confidence 999999999864543 3321 00 0245779999999998644 3 222 23 37899999999988753 322
Q ss_pred CCCcchhcchhhHhhhccccceeeecCCCCC-CC--cccccC-Cceeeeeecccccchhhcccccc--ccccEEEecCCC
Q 004225 138 LGDERTILSLGDFLQRLHTMKVLQIGGYSAS-LP--YEKVEN-GMWVEIREAFHLEHILIRESSVT--NNLVILRVKGCD 211 (767)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~--~~~~~~-l~~l~i~~~~~l~~~~~~~~~~~--~~L~~L~i~~~~ 211 (767)
.+..+++|+.|.++++... ++ +..+.. |+.|.++++. +..+. ...... ++|++|+++++.
T Consensus 590 ------------~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp-~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 590 ------------AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIP-NIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp ------------CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCC-SCCCTTCSSCEEEEECCSSC
T ss_pred ------------hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCc-hhhhccccCCCCEEECcCCc
Confidence 2455667777777776542 21 334555 7777777765 33331 111112 336677766654
Q ss_pred cccccc---CCCC--cCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccce
Q 004225 212 HLVNLV---PPST--SFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKE 286 (767)
Q Consensus 212 ~~~~~~---~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~ 286 (767)
....++ .... .+++|+.|++++|.. ..+ +..++..+++|+.|++++|. +..++........+....+++|+.
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~l-p~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEI-QKF-PTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSC-CHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCE
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcC-Ccc-CHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccE
Confidence 322111 0111 223566666665532 233 22223345566666665543 333433221100000000225555
Q ss_pred EeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhc
Q 004225 287 LKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVER 339 (767)
Q Consensus 287 L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i 339 (767)
|+++++ +++.++.......+|+|+.|++++| .+..+|......++|+.+++
T Consensus 733 L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 733 IDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGI 783 (876)
T ss_dssp EECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEEC
T ss_pred EECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEEC
Confidence 555554 3334432100014455555555544 23334433333344444444
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=2.3e-14 Score=159.76 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=36.0
Q ss_pred cccccEEEecCCCcccccc---CCCCcCCCCCEEEeccCccchhhcC-chhhhccccCcEEeEccccccchhcc
Q 004225 199 TNNLVILRVKGCDHLVNLV---PPSTSFQNLTNMVVSRCNNLKIVLT-SLIAKTLVRLRYMKIKSCDRITEIVQ 268 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~i~~c~~l~~~~~ 268 (767)
+++|++|+++++......+ ...+.+++|++|++++|. ++.++. ...+..+++|++|++++|. ++.++.
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~ 404 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNT-FHPMPD 404 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCS
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCC-CccCCh
Confidence 5666666666654332221 123456677777777663 333221 1223456777777777663 444443
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=4.7e-14 Score=156.02 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=79.7
Q ss_pred cccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccch--hhcCchhhhccccCcEEeEccccccchhccccccc-
Q 004225 197 SVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLK--IVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVV- 273 (767)
Q Consensus 197 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~- 273 (767)
..+++|++|+++++......+.....+++|++|++++|.-.. .++ ..++.+++|++|++++|.-...++......
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA--EMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH--HHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch--HHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 356788888888776544345556778888888888775332 221 224567888888888766333244321110
Q ss_pred ----------c---ccccccc-cccceEeecCCCCcccccCCCccccCCccceEeecCCCCccccccc-CCCCcccchhh
Q 004225 274 ----------A---KDEVITF-RELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEG-KLSTPKLHKVE 338 (767)
Q Consensus 274 ----------~---~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~l~ 338 (767)
+ ......+ ++|+.|+++++ +++.++.. ...+++|++|++++| .++.+|.. ....++|+.++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence 0 0000001 45555555554 34444432 246778888888777 56666665 33445677777
Q ss_pred ccc
Q 004225 339 RHG 341 (767)
Q Consensus 339 i~~ 341 (767)
+++
T Consensus 475 l~~ 477 (520)
T 2z7x_B 475 LHT 477 (520)
T ss_dssp CCS
T ss_pred CcC
Confidence 776
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=9.4e-14 Score=153.56 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=53.5
Q ss_pred CcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccc--hhccccccccccccccccccceEeecCCCCcccc
Q 004225 221 TSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRIT--EIVQGDDVVAKDEVITFRELKELKLVDLERLTSF 298 (767)
Q Consensus 221 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 298 (767)
..+++|++|++++|.-....+. . ++.+++|++|++++|.--. .++..... +++|+.|+++++.--..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~-~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~--------l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFE-N-CGHLTELETLILQMNQLKELSKIAEMTTQ--------MKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT-T-CCCCSSCCEEECCSSCCCBHHHHHHHHTT--------CTTCCEEECCSSCCBCCG
T ss_pred hhCCcccEEEeECCccChhhhh-h-hccCCCCCEEEccCCccCccccchHHHhh--------CCCCCEEECCCCcCCccc
Confidence 5789999999999865443432 2 4679999999999886322 33322222 778888888775433224
Q ss_pred cCCCccccCCccceEeecCC
Q 004225 299 CSGNCAFKFPSLERLVVDDC 318 (767)
Q Consensus 299 ~~~~~~~~~~~L~~L~i~~c 318 (767)
+.+. ...+++|++|++++|
T Consensus 391 ~~~~-~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 391 KKGD-CSWTKSLLSLNMSSN 409 (520)
T ss_dssp GGCS-CCCCTTCCEEECCSS
T ss_pred ccch-hccCccCCEEECcCC
Confidence 4321 123455555555555
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=4.7e-14 Score=158.10 Aligned_cols=110 Identities=22% Similarity=0.299 Sum_probs=53.9
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
+++|++|++++|. +..++ ...+..+++|++|+++++. +..+. +..+..+++|++|++.++ +++.++..
T Consensus 51 l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~--------~~~~~~l~~L~~L~L~~n-~l~~l~~~ 118 (570)
T 2z63_A 51 FPELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTGNP-IQSLA--------LGAFSGLSSLQKLVAVET-NLASLENF 118 (570)
T ss_dssp CSSCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTCC-CCEEC--------TTTTTTCTTCCEEECTTS-CCCCSTTC
T ss_pred CCCceEEECCCCc-CCccC-cccccCchhCCEEeCcCCc-CCccC--------HhhhcCcccccccccccc-ccccCCCc
Confidence 4555555555542 33332 2223445555555555543 33221 123445666666666654 24443332
Q ss_pred CCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
. ...+++|++|++++|....-..+..+ ..+++|++|++++|.
T Consensus 119 ~--~~~l~~L~~L~L~~n~l~~~~lp~~~--~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 119 P--IGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNK 160 (570)
T ss_dssp S--CTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECTTSC
T ss_pred c--ccccccccEEecCCCccceecChhhh--cccCCCCEEeCcCCc
Confidence 2 34567777777776643221112222 256677777776654
No 69
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=2.6e-13 Score=158.61 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=61.2
Q ss_pred ccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcc-cccccccccc
Q 004225 200 NNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQ-GDDVVAKDEV 278 (767)
Q Consensus 200 ~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~~~~~ 278 (767)
++|++|+++++......+.....+++|+.|+++++. ++.+.+.. +.++++|++|+++++. +..+.. ....
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~------ 336 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEA-FYGLDNLQVLNLSYNL-LGELYSSNFYG------ 336 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTT-TTTCSSCCEEEEESCC-CSCCCSCSCSS------
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHH-hcCCCCCCEEECCCCC-CCccCHHHhcC------
Confidence 567777776654333222334567777777777764 33332322 3567778888887765 333322 2222
Q ss_pred ccccccceEeecCCCCcccccCCCccccCCccceEeecCC
Q 004225 279 ITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDC 318 (767)
Q Consensus 279 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 318 (767)
+++|+.|+++++ .++.++.. ....+++|++|+++++
T Consensus 337 --l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 337 --LPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN 372 (844)
T ss_dssp --CTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETC
T ss_pred --CCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCC
Confidence 677777777765 44554432 2245677777777766
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.56 E-value=1.9e-13 Score=141.38 Aligned_cols=284 Identities=13% Similarity=0.133 Sum_probs=181.0
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
+|+.++++++. +..+| .. -.++|++|+++++. +.++. +..+..+++|++|++.++. ++.+....
T Consensus 32 ~l~~l~~~~~~-l~~lp-~~---~~~~l~~L~L~~n~-i~~~~--------~~~~~~l~~L~~L~L~~n~-l~~~~~~~- 95 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVP-KD---LPPDTALLDLQNNK-ITEIK--------DGDFKNLKNLHTLILINNK-ISKISPGA- 95 (330)
T ss_dssp ETTEEECTTSC-CCSCC-CS---CCTTCCEEECCSSC-CCCBC--------TTTTTTCTTCCEEECCSSC-CCCBCTTT-
T ss_pred CCeEEEecCCC-ccccC-cc---CCCCCeEEECCCCc-CCEeC--------hhhhccCCCCCEEECCCCc-CCeeCHHH-
Confidence 67888877753 55553 22 23678889988874 55441 1245668889999988763 55443322
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
...+++|++|+++++. ++... ...+++|++|++++|..... ....+.++++|+.|.++++.
T Consensus 96 -~~~l~~L~~L~Ls~n~-l~~l~-----~~~~~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 96 -FAPLVKLERLYLSKNQ-LKELP-----EKMPKTLQELRVHENEITKV------------RKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp -TTTCTTCCEEECCSSC-CSBCC-----SSCCTTCCEEECCSSCCCBB------------CHHHHTTCTTCCEEECCSSC
T ss_pred -hcCCCCCCEEECCCCc-CCccC-----hhhcccccEEECCCCccccc------------CHhHhcCCccccEEECCCCc
Confidence 4567889999998875 33222 12347889998887753211 12346678888888888775
Q ss_pred CC------CCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhh
Q 004225 167 AS------LPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIV 240 (767)
Q Consensus 167 ~~------~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 240 (767)
.. ..+..++.|+.+.+.++. ++.+. ....++|++|+++++......+.....+++|++|+++++. ++..
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~---~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 231 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTN-ITTIP---QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAV 231 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC---SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEE
T ss_pred CCccCcChhhccCCCCcCEEECCCCc-cccCC---ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-Ccee
Confidence 42 223456788888887765 44431 1223789999998875433223346678999999999875 4444
Q ss_pred cCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCc-----cccCCccceEee
Q 004225 241 LTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNC-----AFKFPSLERLVV 315 (767)
Q Consensus 241 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~~~~L~~L~i 315 (767)
++.. +..+++|++|++++|. +..++..... +++|+.|+++++ .++.++.... ....++|+.|++
T Consensus 232 ~~~~-~~~l~~L~~L~L~~N~-l~~lp~~l~~--------l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 232 DNGS-LANTPHLRELHLNNNK-LVKVPGGLAD--------HKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp CTTT-GGGSTTCCEEECCSSC-CSSCCTTTTT--------CSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred Chhh-ccCCCCCCEEECCCCc-CccCChhhcc--------CCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe
Confidence 3322 4578999999999985 6666655444 899999999986 4666654321 113578999999
Q ss_pred cCCCCcc--cccccCCCCcccchhhccc
Q 004225 316 DDCPDMK--IFSEGKLSTPKLHKVERHG 341 (767)
Q Consensus 316 ~~c~~l~--~~~~~~~~~~~L~~l~i~~ 341 (767)
.+.|-.. ..|........++.+++++
T Consensus 301 ~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred ecCcccccccCccccccccceeEEEecc
Confidence 9887432 2222233345666666654
No 71
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.56 E-value=9.3e-13 Score=140.16 Aligned_cols=328 Identities=13% Similarity=0.103 Sum_probs=250.6
Q ss_pred CHHHHHhhhc-CCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCC-CCHHHHHHHHHHHHHHHh--hh-----
Q 004225 360 SLPGMLAGVW-SDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRE-DNPQLQLEAARALTNIAS--EN----- 430 (767)
Q Consensus 360 ~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~--~~----- 430 (767)
.|+.|...+. +.-.+.+..|+..|+.++..... -+..++++.|+..|+.+ ++.++...+..+|.++.. +.
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~-~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~ 100 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRL-EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEE 100 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTT-HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHH-HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccc
Confidence 5888888887 45678999999999999833333 34456789999998865 358888899999988877 11
Q ss_pred -------------hHHH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCch-hHHHHHh-cCCHHHHHHHHccCCC
Q 004225 431 -------------TNVV-IDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPR-DRDLVLS-EKALIPLLAQLNKHAK 494 (767)
Q Consensus 431 -------------~~~~-~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~-~g~i~~L~~ll~~~~~ 494 (767)
.+.+ .+.+.++.|+.+|++.+..+|..++.+|..++...++ .++.+.. .++++.|+.+| ++..
T Consensus 101 ~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL-~d~r 179 (651)
T 3grl_A 101 NSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL-ADSR 179 (651)
T ss_dssp -------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG-GCSS
T ss_pred cccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH-hCch
Confidence 1122 3667899999999999999999999999999988887 6777774 48999999999 7888
Q ss_pred hHHHHHHHHHHHhhcCCCCC-CCccchhchHHHHHHHhcCCC----HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHH
Q 004225 495 PSMLRNATKTLSRFCQGKPE-PPFDQVRPALPALAQLVHSND----NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRL 569 (767)
Q Consensus 495 ~~~~~~~~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 569 (767)
..+|..++..|.+++.+++. .+.+..+++++.|+.++..+. ..+..+++.++.+|.++++.+...+.+.+.++.|
T Consensus 180 E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L 259 (651)
T 3grl_A 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRM 259 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 99999999999999999844 455666799999999998544 4889999999999999998888889999999999
Q ss_pred HHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccC------CHHHHHHHHHcCCHHHHHHHHhc
Q 004225 570 VKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAG------NREQIQVVIDAGVIGPLVDLLQN 643 (767)
Q Consensus 570 ~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~------~~~~~~~~~~~~~i~~L~~ll~~ 643 (767)
..+++..+. ..... -.-+.|+ ..++.++.-++.. +......+.+.|+++.+++++..
T Consensus 260 ~~LL~~~~~--~~~W~-~Qk~~N~--------------~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~ 322 (651)
T 3grl_A 260 KPWFEVGDE--NSGWS-AQKVTNL--------------HLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA 322 (651)
T ss_dssp GGGGCCCSC--SSCCC-HHHHHHH--------------HHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHhCCCcc--ccccH-HHHHHHH--------------HHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 999986543 21111 1112222 1233344444432 33456678899999999999987
Q ss_pred C--CchhHHHHHHHHHHhhcCCCHHHHHHHHHcC---------ChHHHHhhhcC-CCHHHHHHHHHHHHHHHHhhh
Q 004225 644 A--EFFTKKEAARAISNAISGGTHEQIKYLVRKG---------CIKPLCDLLLY-ADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 644 ~--~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~---------~i~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~ 707 (767)
. ...++.+|..+++.++.+ ++.....+.+.. ++..|..++.+ ...++|.+|+.++..++...+
T Consensus 323 ~~~p~~i~~~Al~tla~~irg-N~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 323 TGVPADILTETINTVSEVIRG-CQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp SSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHHHHHHHhC-CHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 6 458999999999999987 666666666533 23334444555 457899999999999986543
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.56 E-value=2.9e-14 Score=146.71 Aligned_cols=130 Identities=17% Similarity=0.176 Sum_probs=106.1
Q ss_pred ccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccc
Q 004225 198 VTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDE 277 (767)
Q Consensus 198 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 277 (767)
.+++|++|+++++. +..++..+..+++|++|++++|.. +.++.. +..+++|++|++++|.....++.....
T Consensus 181 ~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~--l~~l~~L~~L~Ls~n~~~~~~p~~~~~----- 251 (328)
T 4fcg_A 181 GLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPL-SALGPA--IHHLPKLEELDLRGCTALRNYPPIFGG----- 251 (328)
T ss_dssp ESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCC-CCCCGG--GGGCTTCCEEECTTCTTCCBCCCCTTC-----
T ss_pred cCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCC-CcCchh--hccCCCCCEEECcCCcchhhhHHHhcC-----
Confidence 36889999998864 445555678899999999999864 445433 567999999999999988877765555
Q ss_pred cccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhccc
Q 004225 278 VITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHG 341 (767)
Q Consensus 278 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~ 341 (767)
+++|+.|++++|..+..++.. ...+++|++|++++|+.+..+|......++++.+.+..
T Consensus 252 ---l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 252 ---RAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ---CCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred ---CCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 899999999999999988854 46899999999999999999998877777788777764
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.56 E-value=8.1e-14 Score=150.10 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=59.5
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
+++|++|+++++. +..++ .+..+++|++|+++++. +..+ .+..+++|++|+++++. ++.++
T Consensus 41 l~~L~~L~Ls~n~-l~~~~---~l~~l~~L~~L~Ls~n~-l~~~-----------~~~~l~~L~~L~Ls~N~-l~~~~-- 101 (457)
T 3bz5_A 41 LATLTSLDCHNSS-ITDMT---GIEKLTGLTKLICTSNN-ITTL-----------DLSQNTNLTYLACDSNK-LTNLD-- 101 (457)
T ss_dssp HTTCCEEECCSSC-CCCCT---TGGGCTTCSEEECCSSC-CSCC-----------CCTTCTTCSEEECCSSC-CSCCC--
T ss_pred cCCCCEEEccCCC-cccCh---hhcccCCCCEEEccCCc-CCeE-----------ccccCCCCCEEECcCCC-Cceee--
Confidence 6788888888873 55553 23567888888888774 4443 14456777777777653 44433
Q ss_pred CCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
...+++|++|++++|. ++... ...+++|++|++++|.
T Consensus 102 ---~~~l~~L~~L~L~~N~-l~~l~-----~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNK-LTKLD-----VSQNPLLTYLNCARNT 138 (457)
T ss_dssp ---CTTCTTCCEEECCSSC-CSCCC-----CTTCTTCCEEECTTSC
T ss_pred ---cCCCCcCCEEECCCCc-CCeec-----CCCCCcCCEEECCCCc
Confidence 3456677777776663 22211 1356666666666654
No 74
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.55 E-value=1.2e-13 Score=150.08 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=178.9
Q ss_pred EEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCccc
Q 004225 10 RLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDIL 89 (767)
Q Consensus 10 ~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 89 (767)
.++..++ +++.+|. -.++|++|+++++. +..+. +..+..+++|++|+++++.-...++... ..
T Consensus 14 ~~~c~~~-~l~~lp~-----l~~~l~~L~Ls~n~-i~~~~--------~~~~~~l~~L~~L~L~~n~~~~~i~~~~--~~ 76 (455)
T 3v47_A 14 NAICINR-GLHQVPE-----LPAHVNYVDLSLNS-IAELN--------ETSFSRLQDLQFLKVEQQTPGLVIRNNT--FR 76 (455)
T ss_dssp EEECCSS-CCSSCCC-----CCTTCCEEECCSSC-CCEEC--------TTTTSSCTTCCEEECCCCSTTCEECTTT--TT
T ss_pred ccCcCCC-CcccCCC-----CCCccCEEEecCCc-cCcCC--------hhHhccCccccEEECcCCcccceECccc--cc
Confidence 3444443 4666643 23679999999885 55441 2456779999999999986544454433 45
Q ss_pred CCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCC-
Q 004225 90 EFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSAS- 168 (767)
Q Consensus 90 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~- 168 (767)
.+++|++|++++|.. ....+..+ ..+++|++|++++|...... .....+..+++|+.|.++++...
T Consensus 77 ~l~~L~~L~Ls~n~l-~~~~~~~~--~~l~~L~~L~L~~n~l~~~~----------~~~~~~~~l~~L~~L~L~~n~l~~ 143 (455)
T 3v47_A 77 GLSSLIILKLDYNQF-LQLETGAF--NGLANLEVLTLTQCNLDGAV----------LSGNFFKPLTSLEMLVLRDNNIKK 143 (455)
T ss_dssp TCTTCCEEECTTCTT-CEECTTTT--TTCTTCCEEECTTSCCBTHH----------HHSSTTTTCTTCCEEECCSSBCCS
T ss_pred ccccCCEEeCCCCcc-CccChhhc--cCcccCCEEeCCCCCCCccc----------cCcccccCcccCCEEECCCCccCc
Confidence 689999999999864 33333334 37899999999998743211 11123677899999999988652
Q ss_pred -CC---cccccCCceeeeeecccccchhhcccc----------------------------------ccccccEEEecCC
Q 004225 169 -LP---YEKVENGMWVEIREAFHLEHILIRESS----------------------------------VTNNLVILRVKGC 210 (767)
Q Consensus 169 -~~---~~~~~~l~~l~i~~~~~l~~~~~~~~~----------------------------------~~~~L~~L~i~~~ 210 (767)
.+ +..++.|+.+.+.++. +..+...... .+++|++|+++++
T Consensus 144 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 144 IQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp CCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred cCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence 22 4567899999988875 2222111111 1256777777665
Q ss_pred CccccccC---------------------------------------CCCcCCCCCEEEeccCccchhhcCchhhhcccc
Q 004225 211 DHLVNLVP---------------------------------------PSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVR 251 (767)
Q Consensus 211 ~~~~~~~~---------------------------------------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 251 (767)
......+. .....++|++|+++++.... .++.. +..+++
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~-~~~l~~ 300 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSV-FSHFTD 300 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTT-TTTCTT
T ss_pred cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhh-cccCCC
Confidence 32110000 00012567777777764333 32322 456788
Q ss_pred CcEEeEccccccchhcc-ccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccc-cccCC
Q 004225 252 LRYMKIKSCDRITEIVQ-GDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIF-SEGKL 329 (767)
Q Consensus 252 L~~L~i~~c~~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~ 329 (767)
|++|++++|. +..++. .... +++|+.|+++++ .++.+... ....+++|++|++++|. +..+ |....
T Consensus 301 L~~L~Ls~n~-l~~~~~~~~~~--------l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 368 (455)
T 3v47_A 301 LEQLTLAQNE-INKIDDNAFWG--------LTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNH-IRALGDQSFL 368 (455)
T ss_dssp CCEEECTTSC-CCEECTTTTTT--------CTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSC-CCEECTTTTT
T ss_pred CCEEECCCCc-ccccChhHhcC--------cccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCc-ccccChhhcc
Confidence 8888888776 443332 2222 788999999887 44555321 23468999999999884 5544 44445
Q ss_pred CCcccchhhccc
Q 004225 330 STPKLHKVERHG 341 (767)
Q Consensus 330 ~~~~L~~l~i~~ 341 (767)
..++|+.+++++
T Consensus 369 ~l~~L~~L~L~~ 380 (455)
T 3v47_A 369 GLPNLKELALDT 380 (455)
T ss_dssp TCTTCCEEECCS
T ss_pred ccccccEEECCC
Confidence 567888888877
No 75
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=7.6e-14 Score=157.41 Aligned_cols=305 Identities=13% Similarity=0.107 Sum_probs=152.9
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCC------CCccceeecccccc
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVM------FPQLQYLKMSDLEK 77 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~ 77 (767)
.+++|++|++++|.....+| ..+..+++|++|+++++..+.. ...+..+.. +++|++|++.++.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~l~~-------~~lp~~~~~L~~~~~l~~L~~L~L~~n~- 316 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLP--TFLKALPEMQLINVACNRGISG-------EQLKDDWQALADAPVGEKIQIIYIGYNN- 316 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCC--TTTTTCSSCCEEECTTCTTSCH-------HHHHHHHHHHHHSGGGGTCCEEECCSSC-
T ss_pred ccCCCCEEEecCCcCCccCh--HHHhcCCCCCEEECcCCCCCcc-------ccchHHHHhhhccccCCCCCEEECCCCc-
Confidence 68899999999997555553 3346899999999998863432 011222222 3677777776653
Q ss_pred cccccC-CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccC-CCcch-----------h
Q 004225 78 FTSFCT-GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHL-GDERT-----------I 144 (767)
Q Consensus 78 l~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~-----------~ 144 (767)
++.+|. .. ...+++|++|++++|..... .+ .+ ..+++|++|++++|... .++.. ..... .
T Consensus 317 l~~ip~~~~--l~~l~~L~~L~L~~N~l~g~-ip-~~--~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 317 LKTFPVETS--LQKMKKLGMLECLYNQLEGK-LP-AF--GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CSSCCCHHH--HTTCTTCCEEECCSCCCEEE-CC-CC--EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred CCccCchhh--hccCCCCCEEeCcCCcCccc-hh-hh--CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 334443 01 34566677776666543212 11 12 24556666666555422 11100 00000 0
Q ss_pred cchhhHhhh--ccccceeeecCCCCCC--C--cc-------cccCCceeeeeecccccchhhccccccccccEEEecCCC
Q 004225 145 LSLGDFLQR--LHTMKVLQIGGYSASL--P--YE-------KVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCD 211 (767)
Q Consensus 145 ~~~~~~~~~--l~~L~~L~l~~~~~~~--~--~~-------~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~ 211 (767)
..+...+.. +++|+.|.++++...- | +. .+.+++.|.++++. +..+.......+++|++|+++++.
T Consensus 390 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp SSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC
T ss_pred cccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC
Confidence 000001111 2245555555443211 0 11 22345555555543 223211112235666666666544
Q ss_pred ccccccCCCCc--------CCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccc
Q 004225 212 HLVNLVPPSTS--------FQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRE 283 (767)
Q Consensus 212 ~~~~~~~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~ 283 (767)
. ..++..... +++|++|++++|. ++.++.......+++|++|+++++. ++.++..... +++
T Consensus 469 l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~--------l~~ 537 (636)
T 4eco_A 469 L-TEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLN--------SST 537 (636)
T ss_dssp C-SBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGG--------CSS
T ss_pred C-CCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCCcChhhhc--------CCC
Confidence 3 233322211 1267777777664 3344322111356777777777665 4444444333 677
Q ss_pred cceEeecCCC------CcccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhcccc
Q 004225 284 LKELKLVDLE------RLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 284 L~~L~l~~~~------~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~~ 342 (767)
|+.|++++++ -...++.. ...+++|++|++++|. ++.+|.... ++|+.+++++.
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEG--ITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTT--GGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSC
T ss_pred CCEEECCCCcccccCcccccChHH--HhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCC
Confidence 7777775433 23333322 3457788888888774 466766533 56777777764
No 76
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.55 E-value=4.8e-13 Score=149.36 Aligned_cols=313 Identities=15% Similarity=0.148 Sum_probs=225.2
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGG 438 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~ 438 (767)
.++.+++.+.+++..++..+..++..++....+.. .-+++.+.+.+++++ +.+|..|+.+++++.. +....
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~~~~~~~----- 121 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRVDKITEY----- 121 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCSGGGHHH-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCChHHHHHH-----
Confidence 47788899999999999998888888773222222 235788888899988 9999999988888765 43333
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC-Cc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP-PF 517 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~-~~ 517 (767)
+++.+.+++.++++.+|..|++++.++...+++.. .+.+.++.+.+++ .++++.++.+|++++..++...+.. ..
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 35789999999999999999999999998766643 2346788999999 7999999999999999999887543 33
Q ss_pred cchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhcc-
Q 004225 518 DQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKG- 596 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~- 596 (767)
....+.++.++..+.+.++..+..++.++..++...+.... .+++.+...+++.+. .|+..|++++.++...
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~--~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANS--AVVLSAVKVLMKFLELL 270 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTT--HHHHHHHHHHHHSCCSC
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCCh--HHHHHHHHHHHHHhhcc
Confidence 44556788888888888899999999999998866543332 367788888999888 9999999999998742
Q ss_pred --CCcceeeh----------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 004225 597 --DGFLTQCT----------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISN 658 (767)
Q Consensus 597 --~~~~~~~l----------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~n 658 (767)
++...+.+ +++..|+.+++.++...++... ..+..+. .+.+++..+|..|+.++.+
T Consensus 271 ~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~-~~~~d~~~Ir~~al~~L~~ 344 (591)
T 2vgl_B 271 PKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILK-----QEIKVFF-VKYNDPIYVKLEKLDIMIR 344 (591)
T ss_dssp CBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTS-CCTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHH-----HHHHhhe-eccCChHHHHHHHHHHHHH
Confidence 22211100 3333344444333321111000 0011111 1113346799999999999
Q ss_pred hhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 659 AISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 659 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
++...+ +.. +++.|.+.+++.+.+++..++++|..++..
T Consensus 345 l~~~~n---v~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 345 LASQAN---IAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp TCCSST---HHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HCChhh---HHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 887533 222 466677888889999999999999998864
No 77
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.55 E-value=3e-13 Score=136.24 Aligned_cols=228 Identities=17% Similarity=0.185 Sum_probs=138.5
Q ss_pred hcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 004225 396 QSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDL 475 (767)
Q Consensus 396 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 475 (767)
..+.++.|++.|.+++ +.++..|+++|.++.. .++++.|+.++.++++.+|..|+++|+.+.........
T Consensus 21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~- 90 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN- 90 (280)
T ss_dssp HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-
Confidence 4456777777777666 7777777777776642 22456677777777777777777777776532221110
Q ss_pred HHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChh
Q 004225 476 VLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTND 555 (767)
Q Consensus 476 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 555 (767)
.++.+.+.+..++++.++..++++|+++....+ .....+++.+...+.++++.++..++++++++..
T Consensus 91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 222333222256677777777777777753321 1233566777777777777777777777776643
Q ss_pred HHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHH
Q 004225 556 KIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIG 635 (767)
Q Consensus 556 ~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~ 635 (767)
...++.++.++.+++. .++..|+++++.+....+. +++
T Consensus 158 -------~~~~~~L~~~l~d~~~--------------------------~vr~~a~~aL~~~~~~~~~---------~~~ 195 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNG--------------------------DVRNWAAFAININKYDNSD---------IRD 195 (280)
T ss_dssp --------CCHHHHHHHHTCSSH--------------------------HHHHHHHHHHHHHTCCCHH---------HHH
T ss_pred -------HHHHHHHHHHHcCCCH--------------------------HHHHHHHHHHHhhccCcHH---------HHH
Confidence 1366777777777766 5556666666555332222 345
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHH
Q 004225 636 PLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENI 702 (767)
Q Consensus 636 ~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l 702 (767)
.|+.+++++++.+|..|+++|+++.. ..+++.|...+++++ ++..|.++|..+
T Consensus 196 ~L~~~l~d~~~~vR~~A~~aL~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 196 CFVEMLQDKNEEVRIEAIIGLSYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 66677777777777777777777652 124566666666543 666677766655
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.55 E-value=1e-13 Score=149.28 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=100.3
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|++++|. +..++ +..+++|++|+++++. +..+ .+..+++|++|+++++ .++.++
T Consensus 62 ~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~-----------~~~~l~~L~~L~L~~N-~l~~l~- 122 (457)
T 3bz5_A 62 KLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNL-----------DVTPLTKLTYLNCDTN-KLTKLD- 122 (457)
T ss_dssp GCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCC-----------CCTTCTTCCEEECCSS-CCSCCC-
T ss_pred ccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Ccee-----------ecCCCCcCCEEECCCC-cCCeec-
Confidence 47889999999874 55552 3578889999988875 4443 1455778888888776 344443
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeec
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIG 163 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (767)
...+++|++|++++|.. +.. +...+++|++|++++|..+..+ .+..+++|+.|.++
T Consensus 123 ----~~~l~~L~~L~l~~N~l-~~l-----~l~~l~~L~~L~l~~n~~~~~~--------------~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 123 ----VSQNPLLTYLNCARNTL-TEI-----DVSHNTQLTELDCHLNKKITKL--------------DVTPQTQLTTLDCS 178 (457)
T ss_dssp ----CTTCTTCCEEECTTSCC-SCC-----CCTTCTTCCEEECTTCSCCCCC--------------CCTTCTTCCEEECC
T ss_pred ----CCCCCcCCEEECCCCcc-cee-----ccccCCcCCEEECCCCCccccc--------------ccccCCcCCEEECC
Confidence 34567777777777642 221 1235677777777766543331 12344555555555
Q ss_pred CCCC-CCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccC
Q 004225 164 GYSA-SLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRC 234 (767)
Q Consensus 164 ~~~~-~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c 234 (767)
++.. ..++..++.++.+.+.++. ++.+ ....+++|++|+++++.. ..++ ...+++|+.|+++++
T Consensus 179 ~n~l~~l~l~~l~~L~~L~l~~N~-l~~~---~l~~l~~L~~L~Ls~N~l-~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 179 FNKITELDVSQNKLLNRLNCDTNN-ITKL---DLNQNIQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp SSCCCCCCCTTCTTCCEEECCSSC-CSCC---CCTTCTTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSS
T ss_pred CCccceeccccCCCCCEEECcCCc-CCee---ccccCCCCCEEECcCCcc-cccC--ccccCCCCEEEeeCC
Confidence 5432 2334444455555555443 2222 122345555555554332 2221 344455555555544
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.54 E-value=2e-13 Score=152.24 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=80.3
Q ss_pred cccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcC-chhhhccccCcEEeEccccccchhccccccc--
Q 004225 197 SVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLT-SLIAKTLVRLRYMKIKSCDRITEIVQGDDVV-- 273 (767)
Q Consensus 197 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~-- 273 (767)
..+++|++|+++++......+.....+++|++|+++++. ++.++. ...+.++++|++|+++++.--..++......
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 345778888887765443344445667778888887763 333211 1123457777777777765322233221100
Q ss_pred ------------cccccccc-cccceEeecCCCCcccccCCCccccCCccceEeecCCCCccccccc-CCCCcccchhhc
Q 004225 274 ------------AKDEVITF-RELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEG-KLSTPKLHKVER 339 (767)
Q Consensus 274 ------------~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~l~i 339 (767)
.......+ ++|+.|+++++ +++.++.. .+.+++|++|++.++ .++.+|.. ....++|+.+++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEEC
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEe
Confidence 00000012 46777777766 56666543 346788888888877 56667765 344567777777
Q ss_pred ccc
Q 004225 340 HGE 342 (767)
Q Consensus 340 ~~~ 342 (767)
++.
T Consensus 505 ~~N 507 (562)
T 3a79_B 505 HDN 507 (562)
T ss_dssp CSC
T ss_pred cCC
Confidence 763
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.54 E-value=9.1e-14 Score=154.90 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=71.6
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
.++|++|+++++. ++.+++. .+..+++|++|+++++. +..+. +..+..+++|++|+++++. +.+.+..
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-i~~~~--------~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 92 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGHG-DLRACANLQVLILKSSR-INTIE--------GDAFYSLGSLEHLDLSDNH-LSSLSSS 92 (549)
T ss_dssp CTTCCEEECCSSC-CCEECSS-TTSSCTTCCEEECTTSC-CCEEC--------TTTTTTCTTCCEEECTTSC-CCSCCHH
T ss_pred CCCccEEECcCCc-cCccChh-hhhcCCcccEEECCCCC-cCccC--------hhhccccccCCEEECCCCc-cCccCHH
Confidence 3578999999875 6666433 34678889999988874 55441 1345567888888888763 4444432
Q ss_pred CCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccc
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTN 134 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 134 (767)
. ...+++|++|++++|....-..+..+ ..+++|++|++++|.....
T Consensus 93 ~--~~~l~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n~~~~~ 138 (549)
T 2z81_A 93 W--FGPLSSLKYLNLMGNPYQTLGVTSLF--PNLTNLQTLRIGNVETFSE 138 (549)
T ss_dssp H--HTTCTTCCEEECTTCCCSSSCSSCSC--TTCTTCCEEEEEESSSCCE
T ss_pred H--hccCCCCcEEECCCCcccccchhhhh--hccCCccEEECCCCccccc
Confidence 2 34577888888887753321122223 3677888888877654433
No 81
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.53 E-value=3.4e-12 Score=135.84 Aligned_cols=388 Identities=13% Similarity=0.119 Sum_probs=278.7
Q ss_pred hcCHHHHHhhhcC--CCHHHHHHHHHHHHHhc--CCC------------------hHHHH-hcCchHHHHhhccCCCCHH
Q 004225 358 LVSLPGMLAGVWS--DDSGLQLEATTWFRKLL--LPP------------------SEKVI-QSGVVARFVEFLTREDNPQ 414 (767)
Q Consensus 358 ~~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~--~~~------------------~~~i~-~~g~i~~L~~ll~~~~~~~ 414 (767)
..++|.++..|+. +|.++...++..|..+. ... .+.++ +.+.++.|+.+|++++ ..
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~ 137 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FH 137 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HH
Confidence 3479999999975 57888888999998877 111 12333 5678999999999988 99
Q ss_pred HHHHHHHHHHHHHh----hhhHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHH
Q 004225 415 LQLEAARALTNIAS----ENTNVVI-DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQL 489 (767)
Q Consensus 415 ~~~~a~~~L~~l~~----~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 489 (767)
+|..|+.+|..++. +..+.+. ..++++.|+.+|++....+|..|+..|.+++.++++.++.+.-.|+++.+++++
T Consensus 138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 99999999999998 3666677 559999999999999999999999999999999999999888889999999999
Q ss_pred ccC---CChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCCCH------HHHHH---HHHHHHhhccCC---
Q 004225 490 NKH---AKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDN------DVLRY---ACEALSCLSDGT--- 553 (767)
Q Consensus 490 ~~~---~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~------~v~~~---a~~~L~~l~~~~--- 553 (767)
... ....+...|+.++.|+.+.+ .+...+...++++.|..+++.+++ ....+ ++.++.-++...
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 522 23478899999999999998 355666778899999999874432 13333 555666666442
Q ss_pred ---hhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeeh--------------------------
Q 004225 554 ---NDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT-------------------------- 604 (767)
Q Consensus 554 ---~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-------------------------- 604 (767)
..+...+.+.|+++.+++++.....+..++..|+.+++.+..++....+.+
T Consensus 298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ 377 (651)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence 235567788999999999998875545889999999999987765322211
Q ss_pred --hhhHHHHHHHhhhccCCHHHHHHHHHc----------CCH---HHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHH
Q 004225 605 --GIAKEACRTISNITAGNREQIQVVIDA----------GVI---GPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIK 669 (767)
Q Consensus 605 --~v~~~a~~~l~nl~~~~~~~~~~~~~~----------~~i---~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 669 (767)
++|.+|+.++..+..++++....++.. +.+ ..+..-+-+.++.----|+.++.++..+ +++...
T Consensus 378 ~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~ 456 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKE 456 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHH
Confidence 778999999999999888766666643 111 1234444455554444578888998887 566655
Q ss_pred HHHHc-----------CChHHHHhhhcC-CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHH
Q 004225 670 YLVRK-----------GCIKPLCDLLLY-ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIED 737 (767)
Q Consensus 670 ~l~~~-----------~~i~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 737 (767)
.+..- -.++.+...+.. .++.++..-+..|...+.. .++.+..++.+.+.++.|.+
T Consensus 457 ~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e------------~p~AV~dFL~~~s~l~~L~~ 524 (651)
T 3grl_A 457 QLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSN------------CPIAVTHFLHNSANVPFLTG 524 (651)
T ss_dssp HHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTT------------CHHHHHHHHHSTTHHHHHHH
T ss_pred HHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhC------------ChHHHHHHHcCCchHHHHHH
Confidence 44431 113344555543 4555544444444444432 45557778877767888887
Q ss_pred HhcCC----ChHHHHHHHHHHHHhcC
Q 004225 738 LKRHD----SNGICEKAVKILEIYWS 759 (767)
Q Consensus 738 l~~~~----~~~v~~~a~~~l~~~~~ 759 (767)
...++ +.-|+..+.-+|.-+|.
T Consensus 525 ~i~~~~~~~~~lvqGL~a~LLGi~ye 550 (651)
T 3grl_A 525 QIAENLGEEEQLVQGLCALLLGISIY 550 (651)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcchHHHHHHHHHHHHHHhh
Confidence 65432 23378888888876644
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.53 E-value=3.1e-13 Score=139.72 Aligned_cols=283 Identities=13% Similarity=0.139 Sum_probs=182.9
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
+|+.++++++. ++.+| .. -.++|++|+++++. +.++. +..+..+++|++|++.++. ++.+....
T Consensus 34 ~l~~l~~~~~~-l~~ip-~~---~~~~l~~L~l~~n~-i~~~~--------~~~~~~l~~L~~L~L~~n~-l~~~~~~~- 97 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVP-KE---ISPDTTLLDLQNND-ISELR--------KDDFKGLQHLYALVLVNNK-ISKIHEKA- 97 (332)
T ss_dssp ETTEEECCSSC-CSSCC-SC---CCTTCCEEECCSSC-CCEEC--------TTTTTTCTTCCEEECCSSC-CCEECGGG-
T ss_pred cCCEEECCCCC-ccccC-CC---CCCCCeEEECCCCc-CCccC--------HhHhhCCCCCcEEECCCCc-cCccCHhH-
Confidence 68888888864 66663 22 24679999998875 55541 1345678899999998874 55553322
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
...+++|++|+++++.. .... ....++|++|+++++....- + ...+.++++|+.|.++++.
T Consensus 98 -~~~l~~L~~L~L~~n~l-~~l~-----~~~~~~L~~L~l~~n~i~~~-~-----------~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 98 -FSPLRKLQKLYISKNHL-VEIP-----PNLPSSLVELRIHDNRIRKV-P-----------KGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp -STTCTTCCEEECCSSCC-CSCC-----SSCCTTCCEEECCSSCCCCC-C-----------SGGGSSCSSCCEEECCSCC
T ss_pred -hhCcCCCCEEECCCCcC-CccC-----ccccccCCEEECCCCccCcc-C-----------HhHhCCCccCCEEECCCCc
Confidence 45688999999988753 3222 12347899999988764211 1 1235678889999988875
Q ss_pred CC---C---CcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhh
Q 004225 167 AS---L---PYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIV 240 (767)
Q Consensus 167 ~~---~---~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 240 (767)
.. . .+..+ .++.+.+.++. ++.+. ....++|++|+++++......+.....+++|++|+++++. ++.+
T Consensus 159 l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~ 232 (332)
T 2ft3_A 159 LENSGFEPGAFDGL-KLNYLRISEAK-LTGIP---KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMI 232 (332)
T ss_dssp CBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCC---SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCC
T ss_pred cccCCCCcccccCC-ccCEEECcCCC-CCccC---ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcC
Confidence 42 1 12223 67777777765 44431 1223789999998865433323346778999999999874 4555
Q ss_pred cCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCcc-----ccCCccceEee
Q 004225 241 LTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCA-----FKFPSLERLVV 315 (767)
Q Consensus 241 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~L~~L~i 315 (767)
++.. +..+++|++|++++|. +..++..... +++|+.|+++++ .++.++..... ...++|+.|++
T Consensus 233 ~~~~-~~~l~~L~~L~L~~N~-l~~lp~~l~~--------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 233 ENGS-LSFLPTLRELHLDNNK-LSRVPAGLPD--------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CTTG-GGGCTTCCEEECCSSC-CCBCCTTGGG--------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred ChhH-hhCCCCCCEEECCCCc-CeecChhhhc--------CccCCEEECCCC-CCCccChhHccccccccccccccceEe
Confidence 4433 4678999999999875 6666655444 899999999986 46666543211 12578999999
Q ss_pred cCCCCc--ccccccCCCCcccchhhccc
Q 004225 316 DDCPDM--KIFSEGKLSTPKLHKVERHG 341 (767)
Q Consensus 316 ~~c~~l--~~~~~~~~~~~~L~~l~i~~ 341 (767)
.+++-. ...|......+.|+.+++++
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred ecCcccccccCcccccccchhhhhhccc
Confidence 999754 22232233345677777655
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.53 E-value=4.5e-13 Score=149.35 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=64.6
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCC
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGD 85 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 85 (767)
++|++|+++++. +..+++ ..+..+++|++|+++++. +..+. +..+..+++|++|+++++. ++.+|..
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~--------~~~~~~l~~L~~L~Ls~N~-l~~lp~~- 118 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRM-PDISFLSELRVLRLSHNR-IRSLD--------FHVFLFNQDLEYLDVSHNR-LQNISCC- 118 (562)
T ss_dssp TTCCEEECCSSC-CCCCCG-GGTTTCTTCCEEECCSCC-CCEEC--------TTTTTTCTTCCEEECTTSC-CCEECSC-
T ss_pred CCcCEEECCCCC-ccccCh-hhhccCCCccEEECCCCC-CCcCC--------HHHhCCCCCCCEEECCCCc-CCccCcc-
Confidence 578888888864 555532 334577888888887774 55441 1334557778888877754 5555532
Q ss_pred CcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 86 LDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 86 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
.+++|++|++++|....-..+..+ ..+++|++|+++++.
T Consensus 119 ----~l~~L~~L~Ls~N~l~~l~~p~~~--~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 119 ----PMASLRHLDLSFNDFDVLPVCKEF--GNLTKLTFLGLSAAK 157 (562)
T ss_dssp ----CCTTCSEEECCSSCCSBCCCCGGG--GGCTTCCEEEEECSB
T ss_pred ----ccccCCEEECCCCCccccCchHhh--cccCcccEEecCCCc
Confidence 467777777777653221111223 256777777777654
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=8.1e-13 Score=151.28 Aligned_cols=238 Identities=16% Similarity=0.150 Sum_probs=108.9
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccc-----c
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFT-----S 80 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~ 80 (767)
++|++|++++|. +..+++ ..+..+++|++|+++++. +..+. +..+..+++|++|++.++..-. .
T Consensus 248 ~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~--------~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 248 TNLTMLDLSYNN-LNVVGN-DSFAWLPQLEYFFLEYNN-IQHLF--------SHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp SCCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSCC-BSEEC--------TTTTTTCTTCCEEECTTCBCCC------
T ss_pred CCCCEEECCCCC-cCccCc-ccccCcccccEeeCCCCc-cCccC--------hhhhcCCCCccEEeccchhhhccccccc
Confidence 359999999885 555533 334678899999998874 44331 2344556677777766432110 1
Q ss_pred ccC-CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccc-cccccC---------------CCcch
Q 004225 81 FCT-GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVV-TNKYHL---------------GDERT 143 (767)
Q Consensus 81 ~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~---------------~~~~~ 143 (767)
++. .......+++|++|++++|.. ....+..+ ..+++|++|++++|... ..++.. ....-
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDI-PGIKSNMF--TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCB-CCCCTTTT--TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred ccccChhhcccCCCCCEEECCCCcc-CCCChhHh--ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 110 000023456666666666542 22222222 24566666666554321 100000 00000
Q ss_pred hcchhhHhhhccccceeeecCCCCC--C---CcccccCCceeeeeecccccchhhccccccccccEEEecCCCcc--ccc
Q 004225 144 ILSLGDFLQRLHTMKVLQIGGYSAS--L---PYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHL--VNL 216 (767)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~--~---~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~--~~~ 216 (767)
.......+..+++|+.|.++++... . .+..++.++.+.+.++. +..+.......+++|++|+++++... ...
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccC
Confidence 0000123445666666666665431 1 23345566666666554 22222222233455555555443321 122
Q ss_pred cCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccc
Q 004225 217 VPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSC 260 (767)
Q Consensus 217 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 260 (767)
+.....+++|+.|+++++. ++.+++.. +.++++|++|+++++
T Consensus 473 p~~~~~l~~L~~L~Ls~N~-l~~i~~~~-~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNN-IANINDDM-LEGLEKLEILDLQHN 514 (680)
T ss_dssp SCTTTTCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSS
T ss_pred CcccccCCCCCEEECCCCC-CCcCChhh-hccccccCEEeCCCC
Confidence 2223444555555555542 33332221 234455555555544
No 85
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.52 E-value=7.3e-14 Score=142.84 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=28.4
Q ss_pred ccCCCCccceeeccccccccc-ccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 60 NIVMFPQLQYLKMSDLEKFTS-FCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 60 ~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
.+..+++|++|+++++.++.. +|.. ...+++|++|++++|.... ..+..+ ..+++|++|++++|.
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~-~~p~~~--~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYITHTNVSG-AIPDFL--SQIKTLVTLDFSYNA 136 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEEEEECCEE-ECCGGG--GGCTTCCEEECCSSE
T ss_pred hHhCCCCCCeeeCCCCCcccccCChh---HhcCCCCCEEECcCCeeCC-cCCHHH--hCCCCCCEEeCCCCc
Confidence 344455555555554333332 2211 2345555555555543221 111112 245555555555554
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.51 E-value=9.3e-13 Score=153.88 Aligned_cols=299 Identities=16% Similarity=0.161 Sum_probs=185.8
Q ss_pred CCCCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccc
Q 004225 2 SCGIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSF 81 (767)
Q Consensus 2 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 81 (767)
|...++|++|+|+++. ++.+.+ ..+..+++|++|++++|.....+. +..+..+++|++|+++++. +...
T Consensus 20 P~lp~~l~~LdLs~N~-i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~--------~~~f~~L~~L~~L~Ls~N~-l~~~ 88 (844)
T 3j0a_A 20 PQVLNTTERLLLSFNY-IRTVTA-SSFPFLEQLQLLELGSQYTPLTID--------KEAFRNLPNLRILDLGSSK-IYFL 88 (844)
T ss_dssp CSSCTTCCEEEEESCC-CCEECS-SSCSSCCSCSEEEECTTCCCCEEC--------TTTTSSCTTCCEEECTTCC-CCEE
T ss_pred CCCCCCcCEEECCCCc-CCccCh-hHCcccccCeEEeCCCCCCccccC--------HHHhcCCCCCCEEECCCCc-Cccc
Confidence 4545789999999975 666633 335789999999999986554441 2456678899999998874 4444
Q ss_pred cCCCCcccCCCCccEEEeccCCccccccc-ccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhcccccee
Q 004225 82 CTGDLDILEFPSLKELRISKCPEFMVRTT-SIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVL 160 (767)
Q Consensus 82 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 160 (767)
.... ...+++|++|++++|........ ..+ ..+++|++|++++|..... .....+.++++|+.|
T Consensus 89 ~p~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~L~~L~~L~Ls~N~l~~~-----------~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 89 HPDA--FQGLFHLFELRLYFCGLSDAVLKDGYF--RNLKALTRLDLSKNQIRSL-----------YLHPSFGKLNSLKSI 153 (844)
T ss_dssp CTTS--SCSCSSCCCEECTTCCCSSCCSTTCCC--SSCSSCCEEEEESCCCCCC-----------CCCGGGGTCSSCCEE
T ss_pred CHhH--ccCCcccCEeeCcCCCCCcccccCccc--cccCCCCEEECCCCccccc-----------ccchhHhhCCCCCEE
Confidence 3333 45788999999998854322111 113 3688999999998764221 111246778888888
Q ss_pred eecCCCCCC----Ccccc--cCCceeeeeecccccchhhcccccc------ccccEEEecCCCccccccC----------
Q 004225 161 QIGGYSASL----PYEKV--ENGMWVEIREAFHLEHILIRESSVT------NNLVILRVKGCDHLVNLVP---------- 218 (767)
Q Consensus 161 ~l~~~~~~~----~~~~~--~~l~~l~i~~~~~l~~~~~~~~~~~------~~L~~L~i~~~~~~~~~~~---------- 218 (767)
.++++.... .+..+ .+++.+.+.++.-.... ......+ .+|++|+++++......+.
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCCCcccccc-ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 888765421 11222 56777777766432221 1111111 2377777776521110000
Q ss_pred --------------------------CC--CcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccc-
Q 004225 219 --------------------------PS--TSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQG- 269 (767)
Q Consensus 219 --------------------------~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~- 269 (767)
.. ...++|+.|+++++.. ....+.. +..+++|++|+++++. +..++..
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l-~~~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~ 309 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSLNSRV-FETLKDLKVLNLAYNK-INKIADEA 309 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC-CEECSCC-SSSCCCCCEEEEESCC-CCEECTTT
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc-cccChhh-hhcCCCCCEEECCCCc-CCCCChHH
Confidence 00 1136899999988753 3443332 4678999999999876 4444332
Q ss_pred cccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCccccccc-CCCCcccchhhccc
Q 004225 270 DDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEG-KLSTPKLHKVERHG 341 (767)
Q Consensus 270 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~l~i~~ 341 (767)
... +++|+.|+++++. ++.+... ....+++|++|++.++ .+..++.. ....++|+.+++++
T Consensus 310 ~~~--------l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 310 FYG--------LDNLQVLNLSYNL-LGELYSS-NFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp TTT--------CSSCCEEEEESCC-CSCCCSC-SCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEET
T ss_pred hcC--------CCCCCEEECCCCC-CCccCHH-HhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCC
Confidence 222 7899999999874 4444322 2357899999999988 56655543 23355777777765
No 87
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.51 E-value=1.4e-12 Score=131.34 Aligned_cols=255 Identities=17% Similarity=0.127 Sum_probs=198.2
Q ss_pred hhcCHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHH
Q 004225 357 KLVSLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVV 434 (767)
Q Consensus 357 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~ 434 (767)
.-..++.+++.|.++++.++..|+..|..+.. .+.++.|++++++++ +.++..|+++|..+.. ....
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~~~~-- 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCED-- 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTHH--
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccch--
Confidence 34579999999999999999999999998652 245788999999988 9999999999998864 1111
Q ss_pred HhCCChHHHH-HhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC
Q 004225 435 IDGGAVPIFV-KLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP 513 (767)
Q Consensus 435 ~~~~~l~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 513 (767)
.+++.+. .++.++++.++..++++|+++....+.... .+++.++..+ .++++.++..++++++++...
T Consensus 90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~~-- 158 (280)
T 1oyz_A 90 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVINDK-- 158 (280)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCCH--
Confidence 1233444 245778999999999999999854433222 3578888889 889999999999999988642
Q ss_pred CCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 514 EPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 514 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
.+++.|..++.++++.++..++++|..+....+ .+++.+..++.+.+.
T Consensus 159 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~--------------- 206 (280)
T 1oyz_A 159 --------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNE--------------- 206 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCH---------------
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCH---------------
Confidence 378999999999999999999999999854332 256778889998888
Q ss_pred hccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 004225 594 VKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR 673 (767)
Q Consensus 594 ~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~ 673 (767)
.++..|+++++++.. ..+++.|+..+++++ ++..|+.+|+.+...
T Consensus 207 -----------~vR~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~----------- 251 (280)
T 1oyz_A 207 -----------EVRIEAIIGLSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGDK----------- 251 (280)
T ss_dssp -----------HHHHHHHHHHHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG-----------
T ss_pred -----------HHHHHHHHHHHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch-----------
Confidence 777777777777652 247888999987644 899999999988541
Q ss_pred cCChHHHHhhhcC-CCHHHHHHHHHHHHH
Q 004225 674 KGCIKPLCDLLLY-ADPEIVTICLKGLEN 701 (767)
Q Consensus 674 ~~~i~~L~~ll~~-~~~~v~~~al~aL~~ 701 (767)
.+++.|.+++.+ ++++++..+..++.+
T Consensus 252 -~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 252 -TLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp -GGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred -hhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 367888888864 677888888877753
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=7.4e-15 Score=165.56 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=52.5
Q ss_pred cCCCCCEEEec-----cCccchhhcC----chhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCC
Q 004225 222 SFQNLTNMVVS-----RCNNLKIVLT----SLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDL 292 (767)
Q Consensus 222 ~~~~L~~L~l~-----~c~~l~~~~~----~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 292 (767)
.+++|+.|+++ +|..+++.+. ...+.++++|++|++++ .+.......... .+++|+.|.+++|
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~------~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGT------YAKKMEMLSVAFA 466 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHH------HCTTCCEEEEESC
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHH------hchhccEeeccCC
Confidence 36777777777 5666663221 12244567777777754 232221111000 1456666666665
Q ss_pred CCcccccCCCccccCCccceEeecCCCCcccccc-cCCCCcccchhhcccc
Q 004225 293 ERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSE-GKLSTPKLHKVERHGE 342 (767)
Q Consensus 293 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~l~i~~~ 342 (767)
. ++..........+|+|++|++++|+--..... .....++|+.++++++
T Consensus 467 ~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 467 G-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp C-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred C-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 4 22221111112356666666666653111111 1112345666666654
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.49 E-value=4.7e-13 Score=153.22 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=57.1
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCC
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGD 85 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 85 (767)
+++++|+++++. ++.+++ ..+..+++|++|+++++. +..+. +..+..+++|++|+++++ .++.++...
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~--------~~~~~~l~~L~~L~L~~n-~l~~l~~~~ 92 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPA-ANFTRYSQLTSLDVGFNT-ISKLE--------PELCQKLPMLKVLNLQHN-ELSQLSDKT 92 (680)
T ss_dssp TTCSEEECCSSC-CCCCCG-GGGGGGTTCSEEECCSSC-CCCCC--------TTHHHHCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCcEEECCCCC-CCCcCH-HHHhCCCcCcEEECCCCc-cCccC--------HHHHhcccCcCEEECCCC-ccCccChhh
Confidence 468888888864 555533 334567788888887763 33221 112233566666666654 344444322
Q ss_pred CcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 86 LDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 86 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
...+++|++|++++|.. ....+..+ ..+++|++|++++|.
T Consensus 93 --~~~l~~L~~L~L~~n~l-~~~~~~~~--~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 93 --FAFCTNLTELHLMSNSI-QKIKNNPF--VKQKNLITLDLSHNG 132 (680)
T ss_dssp --TTTCTTCSEEECCSSCC-CCCCSCTT--TTCTTCCEEECCSSC
T ss_pred --hccCCCCCEEECCCCcc-CccChhHc--cccCCCCEEECCCCc
Confidence 23456666666665532 22222222 245566666666554
No 90
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=6e-13 Score=149.07 Aligned_cols=246 Identities=18% Similarity=0.138 Sum_probs=111.2
Q ss_pred cCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCccccc
Q 004225 29 SSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVR 108 (767)
Q Consensus 29 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 108 (767)
..+++|++|++.++. +.++ +.....+ +|++|++.+|. +..++. ..+++|++|++.+|......
T Consensus 279 ~~l~~L~~L~l~~~~-l~~l---------~~~~~~~-~L~~L~l~~n~-~~~l~~-----~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 279 NCLTNVSSFSLVSVT-IERV---------KDFSYNF-GWQHLELVNCK-FGQFPT-----LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp GGGTTCSEEEEESCE-ECSC---------CBCCSCC-CCSEEEEESCB-CSSCCB-----CBCSSCCEEEEESCBSCCBC
T ss_pred cCcCcccEEEecCcc-chhh---------hhhhccC-CccEEeeccCc-ccccCc-----ccccccCEEeCcCCcccccc
Confidence 455666666666653 2222 2233334 66666666653 333332 34666777777666533221
Q ss_pred ccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccc
Q 004225 109 TTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHL 188 (767)
Q Consensus 109 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l 188 (767)
+...+++|++|++++|..... ......+..+++|+.|.++++..
T Consensus 342 -----~~~~~~~L~~L~l~~n~l~~~----------~~~~~~~~~~~~L~~L~l~~n~l--------------------- 385 (570)
T 2z63_A 342 -----SEVDLPSLEFLDLSRNGLSFK----------GCCSQSDFGTTSLKYLDLSFNGV--------------------- 385 (570)
T ss_dssp -----CCCBCTTCCEEECCSSCCBEE----------EEEEHHHHTCSCCCEEECCSCSE---------------------
T ss_pred -----ccccCCCCCEEeCcCCccCcc----------ccccccccccCccCEEECCCCcc---------------------
Confidence 113566777777766543111 00112345566666666666542
Q ss_pred cchhhccccccccccEEEecCCCcccccc-CCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEcccccc-chh
Q 004225 189 EHILIRESSVTNNLVILRVKGCDHLVNLV-PPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRI-TEI 266 (767)
Q Consensus 189 ~~~~~~~~~~~~~L~~L~i~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l-~~~ 266 (767)
..+. .....+++|++|++.++......+ .....+++|++|++++|...... +. .+.++++|++|++.+|.-. ..+
T Consensus 386 ~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 386 ITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NG-IFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp EEEE-EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC-TT-TTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccc-ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc-hh-hhhcCCcCcEEECcCCcCccccc
Confidence 1111 112234555555555543222111 12344555555555555322222 11 1234555555555555422 122
Q ss_pred ccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCccccccc-CCCCcccchhhccc
Q 004225 267 VQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEG-KLSTPKLHKVERHG 341 (767)
Q Consensus 267 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~l~i~~ 341 (767)
+..... +++|+.|+++++. ++.+... ....+++|++|++++| .++.+|.. ....++|+.+++++
T Consensus 463 p~~~~~--------l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 463 PDIFTE--------LRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CSCCTT--------CTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred hhhhhc--------ccCCCEEECCCCc-cccCChh-hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecC
Confidence 222222 4555555555552 3333111 1234555555555555 33333332 22334455555554
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.48 E-value=1.7e-12 Score=134.12 Aligned_cols=223 Identities=15% Similarity=0.171 Sum_probs=103.4
Q ss_pred CCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcch
Q 004225 64 FPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERT 143 (767)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 143 (767)
+++|+.|++.++. ++.++... ...+++|++|++++|. +....+..+ ..+++|++|++++|... .++. .
T Consensus 53 ~~~l~~L~l~~n~-i~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~L~L~~n~l~-~l~~---~-- 120 (332)
T 2ft3_A 53 SPDTTLLDLQNND-ISELRKDD--FKGLQHLYALVLVNNK-ISKIHEKAF--SPLRKLQKLYISKNHLV-EIPP---N-- 120 (332)
T ss_dssp CTTCCEEECCSSC-CCEECTTT--TTTCTTCCEEECCSSC-CCEECGGGS--TTCTTCCEEECCSSCCC-SCCS---S--
T ss_pred CCCCeEEECCCCc-CCccCHhH--hhCCCCCcEEECCCCc-cCccCHhHh--hCcCCCCEEECCCCcCC-ccCc---c--
Confidence 3566666666543 44443322 3456666666666653 222222222 24566666666655421 1111 0
Q ss_pred hcchhhHhhhccccceeeecCCCCC-CC---cccccCCceeeeeeccccc-chhhccccccccccEEEecCCCccccccC
Q 004225 144 ILSLGDFLQRLHTMKVLQIGGYSAS-LP---YEKVENGMWVEIREAFHLE-HILIRESSVTNNLVILRVKGCDHLVNLVP 218 (767)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~-~~---~~~~~~l~~l~i~~~~~l~-~~~~~~~~~~~~L~~L~i~~~~~~~~~~~ 218 (767)
+ .++|+.|.++++... .+ +..++.++.+.+.++.--. .+.......+ +|++|+++++. +..++.
T Consensus 121 -------~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~ 189 (332)
T 2ft3_A 121 -------L--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK 189 (332)
T ss_dssp -------C--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS
T ss_pred -------c--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCc
Confidence 0 145666666655431 11 2345566666666553211 0111111222 56666665543 222222
Q ss_pred CCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccc
Q 004225 219 PSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSF 298 (767)
Q Consensus 219 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 298 (767)
..+++|++|+++++. ++..++.. +..+++|++|+++++. +..++..... .+++|+.|+++++ +++.+
T Consensus 190 --~~~~~L~~L~l~~n~-i~~~~~~~-l~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~l 256 (332)
T 2ft3_A 190 --DLPETLNELHLDHNK-IQAIELED-LLRYSKLYRLGLGHNQ-IRMIENGSLS-------FLPTLRELHLDNN-KLSRV 256 (332)
T ss_dssp --SSCSSCSCCBCCSSC-CCCCCTTS-STTCTTCSCCBCCSSC-CCCCCTTGGG-------GCTTCCEEECCSS-CCCBC
T ss_pred --cccCCCCEEECCCCc-CCccCHHH-hcCCCCCCEEECCCCc-CCcCChhHhh-------CCCCCCEEECCCC-cCeec
Confidence 223566666666653 33332222 2346666666666553 3333321111 1566666666655 34455
Q ss_pred cCCCccccCCccceEeecCCCCccccc
Q 004225 299 CSGNCAFKFPSLERLVVDDCPDMKIFS 325 (767)
Q Consensus 299 ~~~~~~~~~~~L~~L~i~~c~~l~~~~ 325 (767)
+.. ...+++|++|++.++ .++.++
T Consensus 257 p~~--l~~l~~L~~L~l~~N-~l~~~~ 280 (332)
T 2ft3_A 257 PAG--LPDLKLLQVVYLHTN-NITKVG 280 (332)
T ss_dssp CTT--GGGCTTCCEEECCSS-CCCBCC
T ss_pred Chh--hhcCccCCEEECCCC-CCCccC
Confidence 432 345666666666665 344343
No 92
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.47 E-value=3.8e-13 Score=137.52 Aligned_cols=256 Identities=13% Similarity=0.024 Sum_probs=159.4
Q ss_pred CCccEEeeecCCCcc--ccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 6 QNLTRLTLSCCMNLR--CLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~--~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.++++|+++++.--. .+ + ..+..+++|++|+++++..+... .+..+..+++|++|+++++.--...+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~-~-~~l~~l~~L~~L~L~~~n~l~~~--------~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI-P-SSLANLPYLNFLYIGGINNLVGP--------IPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC-C-GGGGGCTTCSEEEEEEETTEESC--------CCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCCccCCccc-C-hhHhCCCCCCeeeCCCCCccccc--------CChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 679999999985322 33 2 23468999999999964444421 235567799999999998753324443
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhcc-ccceeee
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLH-TMKVLQI 162 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l 162 (767)
. ...+++|++|++++|.... ..+..+ ..+++|++|++++|......+ ..+..++ +|+.|.+
T Consensus 120 ~---~~~l~~L~~L~Ls~N~l~~-~~p~~~--~~l~~L~~L~L~~N~l~~~~p------------~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 120 F---LSQIKTLVTLDFSYNALSG-TLPPSI--SSLPNLVGITFDGNRISGAIP------------DSYGSFSKLFTSMTI 181 (313)
T ss_dssp G---GGGCTTCCEEECCSSEEES-CCCGGG--GGCTTCCEEECCSSCCEEECC------------GGGGCCCTTCCEEEC
T ss_pred H---HhCCCCCCEEeCCCCccCC-cCChHH--hcCCCCCeEECcCCcccCcCC------------HHHhhhhhcCcEEEC
Confidence 2 4678999999999886432 222323 368999999999987543321 2345565 7888888
Q ss_pred cCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcC
Q 004225 163 GGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLT 242 (767)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 242 (767)
+++.. ..........++ |++|+++++......+.....+++|+.|+++++......+.
T Consensus 182 ~~N~l---------------------~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 182 SRNRL---------------------TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CSSEE---------------------EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred cCCee---------------------eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 77642 111111112223 77777777644333333456677788888877654333322
Q ss_pred chhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcc
Q 004225 243 SLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMK 322 (767)
Q Consensus 243 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~ 322 (767)
+..+++|++|+++++.-...++..... +++|+.|++++++--..++.. ..+++|+.+++.+++.+.
T Consensus 240 ---~~~l~~L~~L~Ls~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 240 ---VGLSKNLNGLDLRNNRIYGTLPQGLTQ--------LKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ---CCCCTTCCEEECCSSCCEECCCGGGGG--------CTTCCEEECCSSEEEEECCCS---TTGGGSCGGGTCSSSEEE
T ss_pred ---ccccCCCCEEECcCCcccCcCChHHhc--------CcCCCEEECcCCcccccCCCC---ccccccChHHhcCCCCcc
Confidence 345677888888777643344433333 677888888776443345432 457778888887777665
Q ss_pred ccc
Q 004225 323 IFS 325 (767)
Q Consensus 323 ~~~ 325 (767)
..|
T Consensus 306 ~~p 308 (313)
T 1ogq_A 306 GSP 308 (313)
T ss_dssp STT
T ss_pred CCC
Confidence 433
No 93
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.47 E-value=5e-12 Score=130.56 Aligned_cols=261 Identities=15% Similarity=0.180 Sum_probs=165.4
Q ss_pred cCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCccccccc
Q 004225 31 FVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTT 110 (767)
Q Consensus 31 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 110 (767)
..+|+.++++++. +.++ +.. ..++|+.|+++++ +++.++... ...+++|++|++++|. +....+
T Consensus 30 ~c~l~~l~~~~~~-l~~l---------p~~--~~~~l~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~ 93 (330)
T 1xku_A 30 QCHLRVVQCSDLG-LEKV---------PKD--LPPDTALLDLQNN-KITEIKDGD--FKNLKNLHTLILINNK-ISKISP 93 (330)
T ss_dssp EEETTEEECTTSC-CCSC---------CCS--CCTTCCEEECCSS-CCCCBCTTT--TTTCTTCCEEECCSSC-CCCBCT
T ss_pred cCCCeEEEecCCC-cccc---------Ccc--CCCCCeEEECCCC-cCCEeChhh--hccCCCCCEEECCCCc-CCeeCH
Confidence 3467777776553 4433 221 2468899999886 466665443 4578899999998875 333333
Q ss_pred ccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCCC-C---cccccCCceeeeeecc
Q 004225 111 SIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSASL-P---YEKVENGMWVEIREAF 186 (767)
Q Consensus 111 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~---~~~~~~l~~l~i~~~~ 186 (767)
..+ ..+++|++|+++++... .++. .-.++|+.|.++++.... + +..+..++.+.+.++.
T Consensus 94 ~~~--~~l~~L~~L~Ls~n~l~-~l~~--------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 94 GAF--APLVKLERLYLSKNQLK-ELPE--------------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp TTT--TTCTTCCEEECCSSCCS-BCCS--------------SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred HHh--cCCCCCCEEECCCCcCC-ccCh--------------hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 334 36889999999887632 2111 011578888888876422 1 3456788888888765
Q ss_pred ccc-chhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccch
Q 004225 187 HLE-HILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITE 265 (767)
Q Consensus 187 ~l~-~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 265 (767)
--. .+.......+++|++|+++++. +..++. ..+++|++|+++++. ++...+.. +..+++|++|+++++. +..
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~--~~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~ 230 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNK-ITKVDAAS-LKGLNNLAKLGLSFNS-ISA 230 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS--SCCTTCSEEECTTSC-CCEECTGG-GTTCTTCCEEECCSSC-CCE
T ss_pred CCccCcChhhccCCCCcCEEECCCCc-cccCCc--cccccCCEEECCCCc-CCccCHHH-hcCCCCCCEEECCCCc-Cce
Confidence 321 1222334557899999998765 333332 234889999998875 44443333 4578899999998876 444
Q ss_pred hccc-cccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCC-------Ccccchh
Q 004225 266 IVQG-DDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLS-------TPKLHKV 337 (767)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~-------~~~L~~l 337 (767)
++.. ... +++|+.|+++++ +++.++.. ...+++|++|++.++ .++.++..... .+.++.+
T Consensus 231 ~~~~~~~~--------l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 231 VDNGSLAN--------TPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp ECTTTGGG--------STTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred eChhhccC--------CCCCCEEECCCC-cCccCChh--hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccce
Confidence 4332 222 789999999987 56666643 456889999999888 45555443221 2356667
Q ss_pred hcccc
Q 004225 338 ERHGE 342 (767)
Q Consensus 338 ~i~~~ 342 (767)
++.+.
T Consensus 299 ~l~~N 303 (330)
T 1xku_A 299 SLFSN 303 (330)
T ss_dssp ECCSS
T ss_pred EeecC
Confidence 77664
No 94
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.46 E-value=1.8e-12 Score=139.74 Aligned_cols=133 Identities=15% Similarity=0.234 Sum_probs=70.1
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCC
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGD 85 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 85 (767)
++++.|+|+++. +..+++ ..+..+++|++|+++++. +..+. +..+..+++|++|+++++ +++.++...
T Consensus 64 ~~l~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~n~-i~~i~--------~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKV-NSFKHLRHLEILQLSRNH-IRTIE--------IGAFNGLANLNTLELFDN-RLTTIPNGA 131 (440)
T ss_dssp TTCSEEECCSCC-CCEECT-TTTSSCSSCCEEECCSSC-CCEEC--------GGGGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred CCCcEEEccCCc-CCeeCH-HHhhCCCCCCEEECCCCc-CCccC--------hhhccCCccCCEEECCCC-cCCeeCHhH
Confidence 356666666653 444422 233566667777776653 44331 123444666777777665 455554332
Q ss_pred CcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCC
Q 004225 86 LDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGY 165 (767)
Q Consensus 86 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (767)
...+++|++|+++++. +.......+ ..+++|++|++.++..+..++. ..+.++++|+.|.++++
T Consensus 132 --~~~l~~L~~L~L~~N~-i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~-----------~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 132 --FVYLSKLKELWLRNNP-IESIPSYAF--NRIPSLRRLDLGELKRLSYISE-----------GAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp --SCSCSSCCEEECCSCC-CCEECTTTT--TTCTTCCEEECCCCTTCCEECT-----------TTTTTCSSCCEEECTTS
T ss_pred --hhccccCceeeCCCCc-ccccCHHHh--hhCcccCEeCCCCCCCcceeCc-----------chhhcccccCeecCCCC
Confidence 3456667777776654 222222223 2566677777666554333211 12445666666666665
Q ss_pred C
Q 004225 166 S 166 (767)
Q Consensus 166 ~ 166 (767)
.
T Consensus 196 ~ 196 (440)
T 3zyj_A 196 N 196 (440)
T ss_dssp C
T ss_pred c
Confidence 4
No 95
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.45 E-value=1.3e-12 Score=133.51 Aligned_cols=247 Identities=16% Similarity=0.101 Sum_probs=134.4
Q ss_pred cEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcc
Q 004225 9 TRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDI 88 (767)
Q Consensus 9 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (767)
+.++..+. .++.+|. . ..++|++|+++++. +.++. ...+..+++|++|+++++. ++.........
T Consensus 10 ~~l~c~~~-~l~~ip~-~---~~~~l~~L~L~~n~-l~~i~--------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 74 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPT-G---IPSSATRLELESNK-LQSLP--------HGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD 74 (306)
T ss_dssp TEEECCSS-CCSSCCS-C---CCTTCCEEECCSSC-CCCCC--------TTTTTTCTTCSEEECCSSC-CCEEEEEEHHH
T ss_pred CEEEcCCC-CcccCCC-C---CCCCCCEEECCCCc-cCccC--------HhHhhccccCCEEECCCCc-cCcccCccccc
Confidence 45555543 3555532 2 23567777777764 44331 0123557777888777653 32221000002
Q ss_pred cCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCC
Q 004225 89 LEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSAS 168 (767)
Q Consensus 89 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (767)
..+++|++|++++|... ..... + ..+++|++|+++++..... + ....+..+++|+.|.++++..
T Consensus 75 ~~~~~L~~L~Ls~n~i~-~l~~~-~--~~l~~L~~L~l~~n~l~~~-~----------~~~~~~~l~~L~~L~l~~n~l- 138 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVI-TMSSN-F--LGLEQLEHLDFQHSNLKQM-S----------EFSVFLSLRNLIYLDISHTHT- 138 (306)
T ss_dssp HSCSCCCEEECCSCSEE-EEEEE-E--ETCTTCCEEECTTSEEESS-T----------TTTTTTTCTTCCEEECTTSCC-
T ss_pred ccccccCEEECCCCccc-cChhh-c--CCCCCCCEEECCCCccccc-c----------cchhhhhccCCCEEECCCCcC-
Confidence 34677888888776532 22111 2 2577888888877653211 0 011245566777777766542
Q ss_pred CCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccc-cccCCCCcCCCCCEEEeccCccchhhcCchhhh
Q 004225 169 LPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLV-NLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAK 247 (767)
Q Consensus 169 ~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 247 (767)
..+.......+++|++|+++++.... ..+.....+++|++|++++|. ++..++.. +.
T Consensus 139 --------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~ 196 (306)
T 2z66_A 139 --------------------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA-FN 196 (306)
T ss_dssp --------------------EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT-TT
T ss_pred --------------------CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHH-hc
Confidence 11111112335778888887765433 234445677888888888774 44443332 35
Q ss_pred ccccCcEEeEccccccchhccc-cccccccccccccccceEeecCCCCcccccCCCccccC-CccceEeecCCC
Q 004225 248 TLVRLRYMKIKSCDRITEIVQG-DDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKF-PSLERLVVDDCP 319 (767)
Q Consensus 248 ~l~~L~~L~i~~c~~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~i~~c~ 319 (767)
.+++|++|+++++. +..++.. ... +++|+.|+++++. ++..... ....+ ++|++|++.+++
T Consensus 197 ~l~~L~~L~L~~N~-l~~~~~~~~~~--------l~~L~~L~L~~N~-l~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 197 SLSSLQVLNMSHNN-FFSLDTFPYKC--------LNSLQVLDYSLNH-IMTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTSC-CSBCCSGGGTT--------CTTCCEEECTTSC-CCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCCc-cCccChhhccC--------cccCCEeECCCCC-CcccCHH-HHHhhhccCCEEEccCCC
Confidence 67888888888765 3333321 122 6788888888774 3333322 12345 488888888875
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.45 E-value=1.8e-14 Score=162.28 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=24.0
Q ss_pred CCCCccEEeeecCCCcccc---cc-Cc---------cccCcCCCceeeeecc
Q 004225 4 GIQNLTRLTLSCCMNLRCL---FS-SS---------TVSSFVQLQCIEIVGC 42 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l---~~-~~---------~~~~l~~L~~L~l~~~ 42 (767)
.+++|++|++++|+.+... |. .+ ....+++|++|++++|
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 122 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc
Confidence 4778888888887654321 10 00 1125777888888776
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.45 E-value=3.5e-13 Score=138.16 Aligned_cols=243 Identities=11% Similarity=0.100 Sum_probs=120.4
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|+++++. +..++ ...+..+++|++|+++++. +.... .+..+++|++|+++++. ++.++
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~----------~~~~l~~L~~L~Ls~n~-l~~l~- 96 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQIS-AADLAPFTKLELLNLSSNV-LYETL----------DLESLSTLRTLDLNNNY-VQELL- 96 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCC-HHHHTTCTTCCEEECTTSC-CEEEE----------EETTCTTCCEEECCSSE-EEEEE-
T ss_pred cCCCCCEEECcCCc-cCcCC-HHHhhCCCcCCEEECCCCc-CCcch----------hhhhcCCCCEEECcCCc-ccccc-
Confidence 34566666666653 44432 2223456666666666654 33321 13446666666666653 33332
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeec
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIG 163 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (767)
.+++|++|++++|..- ... ...+++|++|++++|..... + ...+..+++|+.|.++
T Consensus 97 ------~~~~L~~L~l~~n~l~-~~~-----~~~~~~L~~L~l~~N~l~~~-~-----------~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 97 ------VGPSIETLHAANNNIS-RVS-----CSRGQGKKNIYLANNKITML-R-----------DLDEGCRSRVQYLDLK 152 (317)
T ss_dssp ------ECTTCCEEECCSSCCS-EEE-----ECCCSSCEEEECCSSCCCSG-G-----------GBCTGGGSSEEEEECT
T ss_pred ------CCCCcCEEECCCCccC-CcC-----ccccCCCCEEECCCCCCCCc-c-----------chhhhccCCCCEEECC
Confidence 2356666666665422 111 12356666666665543111 0 0113344455555555
Q ss_pred CCCCCCCcccccCCceeeeeecccccchhhccc-cccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcC
Q 004225 164 GYSASLPYEKVENGMWVEIREAFHLEHILIRES-SVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLT 242 (767)
Q Consensus 164 ~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 242 (767)
++. +..+..... ..+++|++|+++++. +..+ +....+++|++|++++|. ++.+++
T Consensus 153 ~N~---------------------l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~ 208 (317)
T 3o53_A 153 LNE---------------------IDTVNFAELAASSDTLEHLNLQYNF-IYDV-KGQVVFAKLKTLDLSSNK-LAFMGP 208 (317)
T ss_dssp TSC---------------------CCEEEGGGGGGGTTTCCEEECTTSC-CCEE-ECCCCCTTCCEEECCSSC-CCEECG
T ss_pred CCC---------------------CCcccHHHHhhccCcCCEEECCCCc-Cccc-ccccccccCCEEECCCCc-CCcchh
Confidence 443 222211111 234667777776654 2332 223346777777777653 334433
Q ss_pred chhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCc-ccccCCCccccCCccceEeecCCCCc
Q 004225 243 SLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERL-TSFCSGNCAFKFPSLERLVVDDCPDM 321 (767)
Q Consensus 243 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~i~~c~~l 321 (767)
. +..+++|++|+++++. ++.++..... +++|+.|++++++-- ..++ .....+++|+.|++.++..+
T Consensus 209 ~--~~~l~~L~~L~L~~N~-l~~l~~~~~~--------l~~L~~L~l~~N~~~~~~~~--~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 209 E--FQSAAGVTWISLRNNK-LVLIEKALRF--------SQNLEHFDLRGNGFHCGTLR--DFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp G--GGGGTTCSEEECTTSC-CCEECTTCCC--------CTTCCEEECTTCCCBHHHHH--HHHHTCHHHHHHHHHHHHHH
T ss_pred h--hcccCcccEEECcCCc-ccchhhHhhc--------CCCCCEEEccCCCccCcCHH--HHHhccccceEEECCCchhc
Confidence 2 3456777777777654 4444443322 567777777665433 1221 11234566666666655555
Q ss_pred c
Q 004225 322 K 322 (767)
Q Consensus 322 ~ 322 (767)
+
T Consensus 276 ~ 276 (317)
T 3o53_A 276 T 276 (317)
T ss_dssp H
T ss_pred c
Confidence 4
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=6.7e-13 Score=144.28 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=48.5
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
+++|++|+|+++. +..+++ ..+..+++|++|++++|. +.... .+..+++|++|+++++ .++.++.
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~----------~l~~l~~L~~L~Ls~N-~l~~l~~- 97 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISA-ADLAPFTKLELLNLSSNV-LYETL----------DLESLSTLRTLDLNNN-YVQELLV- 97 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCG-GGGTTCTTCCEEECTTSC-CEEEE----------ECTTCTTCCEEECCSS-EEEEEEE-
T ss_pred CCCccEEEeeCCc-CCCCCH-HHHhCCCCCCEEEeeCCC-CCCCc----------ccccCCCCCEEEecCC-cCCCCCC-
Confidence 4456666666653 444422 223456666666666554 33321 1344566666666655 2333321
Q ss_pred CCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
.++|++|++++|.... .. ...+++|++|++++|.
T Consensus 98 ------~~~L~~L~L~~N~l~~-~~-----~~~l~~L~~L~L~~N~ 131 (487)
T 3oja_A 98 ------GPSIETLHAANNNISR-VS-----CSRGQGKKNIYLANNK 131 (487)
T ss_dssp ------CTTCCEEECCSSCCCC-EE-----ECCCSSCEEEECCSSC
T ss_pred ------CCCcCEEECcCCcCCC-CC-----ccccCCCCEEECCCCC
Confidence 2566666666553221 11 1234556666666554
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.44 E-value=3.9e-12 Score=141.09 Aligned_cols=254 Identities=19% Similarity=0.113 Sum_probs=171.8
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
++++|+++++. ++.+|. .+ .++|++|++++|. ++.+ +. .+++|++|+++++. ++.++.
T Consensus 41 ~l~~L~ls~n~-L~~lp~-~l---~~~L~~L~L~~N~-l~~l---------p~---~l~~L~~L~Ls~N~-l~~lp~--- 98 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPD-CL---PAHITTLVIPDNN-LTSL---------PA---LPPELRTLEVSGNQ-LTSLPV--- 98 (622)
T ss_dssp CCCEEECCSSC-CSCCCS-CC---CTTCSEEEECSCC-CSCC---------CC---CCTTCCEEEECSCC-CSCCCC---
T ss_pred CCcEEEecCCC-cCccCh-hh---CCCCcEEEecCCC-CCCC---------CC---cCCCCCEEEcCCCc-CCcCCC---
Confidence 58889998864 666643 22 2689999998884 5554 11 37889999998874 665553
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
.+++|++|++++|. ++.. + ..+++|++|++++|.. +.++. .+++|+.|.++++.
T Consensus 99 ---~l~~L~~L~Ls~N~-l~~l-----~-~~l~~L~~L~L~~N~l-~~lp~---------------~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 99 ---LPPGLLELSIFSNP-LTHL-----P-ALPSGLCKLWIFGNQL-TSLPV---------------LPPGLQELSVSDNQ 152 (622)
T ss_dssp ---CCTTCCEEEECSCC-CCCC-----C-CCCTTCCEEECCSSCC-SCCCC---------------CCTTCCEEECCSSC
T ss_pred ---CCCCCCEEECcCCc-CCCC-----C-CCCCCcCEEECCCCCC-CcCCC---------------CCCCCCEEECcCCc
Confidence 47899999998874 3321 1 1568899999887753 22111 23678888888876
Q ss_pred CCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhh
Q 004225 167 ASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIA 246 (767)
Q Consensus 167 ~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 246 (767)
.........+++.|.+.++. ++.+. ..+++|++|+++++. +..++ ..+++|+.|++++|. ++.++.
T Consensus 153 l~~l~~~~~~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N~-l~~l~---~~~~~L~~L~L~~N~-l~~l~~---- 218 (622)
T 3g06_A 153 LASLPALPSELCKLWAYNNQ-LTSLP----MLPSGLQELSVSDNQ-LASLP---TLPSELYKLWAYNNR-LTSLPA---- 218 (622)
T ss_dssp CSCCCCCCTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSSCCC----
T ss_pred CCCcCCccCCCCEEECCCCC-CCCCc----ccCCCCcEEECCCCC-CCCCC---CccchhhEEECcCCc-ccccCC----
Confidence 43222345677788777754 54442 346889999998754 34332 235789999998874 444432
Q ss_pred hccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccc
Q 004225 247 KTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSE 326 (767)
Q Consensus 247 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~ 326 (767)
.+++|++|++++|. ++.++ .. +++|+.|+++++ +++.++. .+++|++|++.+| .++.+|.
T Consensus 219 -~~~~L~~L~Ls~N~-L~~lp---~~--------l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 219 -LPSGLKELIVSGNR-LTSLP---VL--------PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp -CCTTCCEEECCSSC-CSCCC---CC--------CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCG
T ss_pred -CCCCCCEEEccCCc-cCcCC---CC--------CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCH
Confidence 35789999998774 66554 11 688999999886 6777663 4688999999888 6667777
Q ss_pred cCCCCcccchhhcccc
Q 004225 327 GKLSTPKLHKVERHGE 342 (767)
Q Consensus 327 ~~~~~~~L~~l~i~~~ 342 (767)
.....++|+.+++++.
T Consensus 279 ~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 279 SLIHLSSETTVNLEGN 294 (622)
T ss_dssp GGGGSCTTCEEECCSC
T ss_pred HHhhccccCEEEecCC
Confidence 6666677888888764
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.44 E-value=7.5e-12 Score=142.23 Aligned_cols=130 Identities=13% Similarity=0.126 Sum_probs=86.8
Q ss_pred cccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccc-ccccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGD-DVVAKDE 277 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~-~~~~~~~ 277 (767)
+.+|+.+++.++............+++|+.|+++++.......+.. +..+++|++|++++|. ++.++... ..
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~-~~~l~~L~~L~Ls~N~-L~~l~~~~f~~----- 516 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNS----- 516 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTT-----
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchh-hhhccccCEEECCCCc-cCCcChHHHcC-----
Confidence 3444455544433222222234567889999999888777665543 4678999999999985 66665433 23
Q ss_pred cccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCC-CC-cccchhhccc
Q 004225 278 VITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKL-ST-PKLHKVERHG 341 (767)
Q Consensus 278 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~-~~-~~L~~l~i~~ 341 (767)
+++|+.|+++++ +++.++.. ....+++|++|+++++ .+..++.... .. .+|+.+++++
T Consensus 517 ---l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 517 ---LSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp ---CTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred ---CCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 789999999986 56666542 2356899999999988 5665555433 22 4788899887
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=7.7e-15 Score=165.40 Aligned_cols=289 Identities=14% Similarity=0.090 Sum_probs=152.5
Q ss_pred CCCCccEEeeecCCCccccccC-------------ccccCcCCCceeeeeccCCcceEEeccchhhccccc-CCCCccce
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSS-------------STVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNI-VMFPQLQY 69 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~-------------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~ 69 (767)
.+++|++|++++|..+...... .....+++|++|++++|. +... . ...+ ..+++|++
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~-------~-~~~l~~~~~~L~~ 134 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDD-------C-LELIAKSFKNFKV 134 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHH-------H-HHHHHHHCTTCCE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHH-------H-HHHHHHhCCCCcE
Confidence 4789999999999766443110 123467899999999875 3311 1 1112 13789999
Q ss_pred eecccccccccccCCCCcccCCCCccEEEeccCCccccccccccc--ccccCCCceeeeCCcc-cccccccCCCcchhcc
Q 004225 70 LKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFT--ERVFPNLEKLKVDAKH-VVTNKYHLGDERTILS 146 (767)
Q Consensus 70 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~ 146 (767)
|++.+|..+.......+ ...+++|++|++++|. +++.....++ ...+++|++|++++|. .+.. ..
T Consensus 135 L~L~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----------~~ 202 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAI-AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF----------SA 202 (594)
T ss_dssp EEEESCEEEEHHHHHHH-HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH----------HH
T ss_pred EeCCCcCCCCHHHHHHH-HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCH----------HH
Confidence 99999877655211111 2358899999999887 3332211111 1257789999998775 1110 12
Q ss_pred hhhHhhhccccceeeecCCCCCCC----cccccCCceeeeeec-------------------ccccch-h--------hc
Q 004225 147 LGDFLQRLHTMKVLQIGGYSASLP----YEKVENGMWVEIREA-------------------FHLEHI-L--------IR 194 (767)
Q Consensus 147 ~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~l~~l~i~~~-------------------~~l~~~-~--------~~ 194 (767)
+.....++++|+.|.+.+|..... ...++.|+.+.+..+ .+++.+ . +.
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~ 282 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGG
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHH
Confidence 333345578888888887733111 123456666654433 222222 0 00
Q ss_pred -cccccccccEEEecCCCccccc--cCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccc--------ccc
Q 004225 195 -ESSVTNNLVILRVKGCDHLVNL--VPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSC--------DRI 263 (767)
Q Consensus 195 -~~~~~~~L~~L~i~~~~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c--------~~l 263 (767)
....+++|++|++++|. +... ......+++|++|++.+| +.+.....+...+++|++|++.+| ..+
T Consensus 283 ~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 01134667777777665 3221 111235677777777766 332222223345677777777433 222
Q ss_pred chhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeec-----CCCCccc
Q 004225 264 TEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVD-----DCPDMKI 323 (767)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~-----~c~~l~~ 323 (767)
......... ..+++|++|. .+|..++..........+|+|++|++. +|..++.
T Consensus 360 ~~~~l~~l~------~~~~~L~~L~-~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 360 TEQGLVSVS------MGCPKLESVL-YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp CHHHHHHHH------HHCTTCCEEE-EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CHHHHHHHH------HhchhHHHHH-HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 221111000 0156666663 344455433221111246777777776 5555553
No 102
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.44 E-value=2.7e-12 Score=138.79 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=66.7
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
+|++|+|+++. +..+++ ..+..+++|++|+++++. +..+. +..+..+++|++|+++++. ++.++...
T Consensus 76 ~l~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~n~-i~~~~--------~~~~~~l~~L~~L~L~~n~-l~~~~~~~- 142 (452)
T 3zyi_A 76 NTRYLNLMENN-IQMIQA-DTFRHLHHLEVLQLGRNS-IRQIE--------VGAFNGLASLNTLELFDNW-LTVIPSGA- 142 (452)
T ss_dssp TCSEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEEC--------TTTTTTCTTCCEEECCSSC-CSBCCTTT-
T ss_pred CccEEECcCCc-CceECH-HHcCCCCCCCEEECCCCc-cCCcC--------hhhccCcccCCEEECCCCc-CCccChhh-
Confidence 56666666653 444422 223456666666666653 44331 1234446666666666643 44444332
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
...+++|++|+++++. +.......+ ..+++|++|++++|..+..++. ..+.++++|+.|.++++.
T Consensus 143 -~~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~-----------~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 143 -FEYLSKLRELWLRNNP-IESIPSYAF--NRVPSLMRLDLGELKKLEYISE-----------GAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp -SSSCTTCCEEECCSCC-CCEECTTTT--TTCTTCCEEECCCCTTCCEECT-----------TTTTTCTTCCEEECTTSC
T ss_pred -hcccCCCCEEECCCCC-cceeCHhHH--hcCCcccEEeCCCCCCccccCh-----------hhccCCCCCCEEECCCCc
Confidence 2345666666666654 222222223 2566666666666554433211 124455566666666554
No 103
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=1.1e-12 Score=132.53 Aligned_cols=221 Identities=13% Similarity=0.118 Sum_probs=119.2
Q ss_pred cEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcc
Q 004225 9 TRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDI 88 (767)
Q Consensus 9 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (767)
++++..+. .++.+| .. ..++|++|+++++. +..+. +..+..+++|++|+++++ .++.+.... .
T Consensus 14 ~~~~c~~~-~l~~ip-~~---~~~~l~~L~l~~n~-i~~~~--------~~~~~~~~~L~~L~l~~n-~l~~~~~~~--~ 76 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVP-VG---IPAASQRIFLHGNR-ISHVP--------AASFRACRNLTILWLHSN-VLARIDAAA--F 76 (285)
T ss_dssp CEEECCSS-CCSSCC-TT---CCTTCSEEECTTSC-CCEEC--------TTTTTTCTTCCEEECCSS-CCCEECTTT--T
T ss_pred eEEEcCcC-CcccCC-cC---CCCCceEEEeeCCc-CCccC--------HHHcccCCCCCEEECCCC-ccceeCHhh--c
Confidence 44555442 355553 22 24578888887764 55441 123556788888888776 355543322 3
Q ss_pred cCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCC
Q 004225 89 LEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSAS 168 (767)
Q Consensus 89 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (767)
..+++|++|++++|..+....+..+ ..+++|++|++++|...... ...+.++++|+.|.++++...
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~------------~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHLDRCGLQELG------------PGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEECTTSCCCCCC------------TTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCCEEeCCCCCCccccCHHHh--cCCcCCCEEECCCCcCCEEC------------HhHhhCCcCCCEEECCCCccc
Confidence 5678888888888775655544434 26788888888877542210 123556777777777766421
Q ss_pred CCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccchhhcCchhhh
Q 004225 169 LPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLKIVLTSLIAK 247 (767)
Q Consensus 169 ~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 247 (767)
.+.......+++|++|+++++. +..+... ...+++|++|+++++. ++...+.. +.
T Consensus 143 ---------------------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~ 198 (285)
T 1ozn_A 143 ---------------------ALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHA-FR 198 (285)
T ss_dssp ---------------------CCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTT-TT
T ss_pred ---------------------ccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCc-ccccCHhH-cc
Confidence 1111112234556666665543 2232222 3455666666666654 33332222 34
Q ss_pred ccccCcEEeEccccccchhccc-cccccccccccccccceEeecCCC
Q 004225 248 TLVRLRYMKIKSCDRITEIVQG-DDVVAKDEVITFRELKELKLVDLE 293 (767)
Q Consensus 248 ~l~~L~~L~i~~c~~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 293 (767)
.+++|++|+++++. +..++.. ... +++|+.|++++.+
T Consensus 199 ~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 199 DLGRLMTLYLFANN-LSALPTEALAP--------LRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSC-CSCCCHHHHTT--------CTTCCEEECCSSC
T ss_pred CcccccEeeCCCCc-CCcCCHHHccc--------CcccCEEeccCCC
Confidence 45666666666653 3333322 111 5666666666543
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.42 E-value=1.8e-12 Score=127.00 Aligned_cols=97 Identities=10% Similarity=0.165 Sum_probs=62.2
Q ss_pred CCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCcc
Q 004225 16 CMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLK 95 (767)
Q Consensus 16 c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 95 (767)
|..++.+|. . .++|++|+++++. ++.+.. ..+..+++|++|++.++..++.++... ...+++|+
T Consensus 20 c~~l~~ip~--~---~~~l~~L~l~~n~-l~~i~~--------~~~~~l~~L~~L~l~~n~~l~~i~~~~--f~~l~~L~ 83 (239)
T 2xwt_C 20 CKDIQRIPS--L---PPSTQTLKLIETH-LRTIPS--------HAFSNLPNISRIYVSIDVTLQQLESHS--FYNLSKVT 83 (239)
T ss_dssp ECSCSSCCC--C---CTTCCEEEEESCC-CSEECT--------TTTTTCTTCCEEEEECCSSCCEECTTT--EESCTTCC
T ss_pred ccCccccCC--C---CCcccEEEEeCCc-ceEECH--------HHccCCCCCcEEeCCCCCCcceeCHhH--cCCCcCCc
Confidence 444666643 1 2368888888774 555411 234557888888888776566666443 34678888
Q ss_pred EEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 96 ELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 96 ~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
+|++++|..++...+..+. .+++|++|++++|.
T Consensus 84 ~L~l~~~n~l~~i~~~~f~--~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 84 HIEIRNTRNLTYIDPDALK--ELPLLKFLGIFNTG 116 (239)
T ss_dssp EEEEEEETTCCEECTTSEE--CCTTCCEEEEEEEC
T ss_pred EEECCCCCCeeEcCHHHhC--CCCCCCEEeCCCCC
Confidence 8888876666665444442 57788888887664
No 105
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=3.5e-12 Score=133.08 Aligned_cols=181 Identities=12% Similarity=0.134 Sum_probs=103.8
Q ss_pred hhccccceeeecCCCC-C----CCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCC
Q 004225 152 QRLHTMKVLQIGGYSA-S----LPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNL 226 (767)
Q Consensus 152 ~~l~~L~~L~l~~~~~-~----~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L 226 (767)
.++++|+.|.++++.. . ..+..+++|+.+.+.++..++.+.......+++|++|+++++......+.....+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 3444555555544432 1 1233455666677776655555533444557889999998765443334456678889
Q ss_pred CEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCC----cccccCCC
Q 004225 227 TNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLER----LTSFCSGN 302 (767)
Q Consensus 227 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----l~~~~~~~ 302 (767)
++|+++++. ++.++. ..+..+++|++|+++++. ++.++...... ....+.++.+.+.++.- +..++.
T Consensus 201 ~~L~l~~n~-l~~~~~-~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~----~~~~~~l~~l~L~~~~l~~~~l~~l~~-- 271 (353)
T 2z80_A 201 SHLILHMKQ-HILLLE-IFVDVTSSVECLELRDTD-LDTFHFSELST----GETNSLIKKFTFRNVKITDESLFQVMK-- 271 (353)
T ss_dssp EEEEEECSC-STTHHH-HHHHHTTTEEEEEEESCB-CTTCCCC----------CCCCCCEEEEESCBCCHHHHHHHHH--
T ss_pred CeecCCCCc-cccchh-hhhhhcccccEEECCCCc-ccccccccccc----ccccchhhccccccccccCcchhhhHH--
Confidence 999998876 444433 334568889999998875 44333221110 00145566666665421 111221
Q ss_pred ccccCCccceEeecCCCCcccccccC-CCCcccchhhcccc
Q 004225 303 CAFKFPSLERLVVDDCPDMKIFSEGK-LSTPKLHKVERHGE 342 (767)
Q Consensus 303 ~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~l~i~~~ 342 (767)
....+++|++|++++| .++.+|... ...++|+.+++++.
T Consensus 272 ~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 272 LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence 1235778888888877 566677654 34567777877763
No 106
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.41 E-value=1.1e-11 Score=133.49 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=71.4
Q ss_pred ccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCc
Q 004225 174 VENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLR 253 (767)
Q Consensus 174 ~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 253 (767)
+++|+.|.+.++..+..+.......+++|++|+++++. +..+ +....+++|++|+|+++ .++.+.+.. +.++++|+
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~ 234 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREI-PNLTPLIKLDELDLSGN-HLSAIRPGS-FQGLMHLQ 234 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSC-CCCTTCSSCCEEECTTS-CCCEECTTT-TTTCTTCC
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccc-cccCCCcccCEEECCCC-ccCccChhh-hccCccCC
Confidence 34444444544444444433334446677777776653 3332 34556677777777776 344443332 35567777
Q ss_pred EEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 254 YMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 254 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
+|++.++. ++.+...... .+++|+.|+++++ +++.++.. ....+++|++|++.++|
T Consensus 235 ~L~L~~n~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 235 KLWMIQSQ-IQVIERNAFD-------NLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTCC-CCEECTTSST-------TCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred EEECCCCc-eeEEChhhhc-------CCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCCC
Confidence 77777654 3333322211 1567777777765 45555532 12356677777776654
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=8.4e-12 Score=138.44 Aligned_cols=237 Identities=16% Similarity=0.102 Sum_probs=172.6
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
.++|++|++++|. ++.+++ .+++|++|++++|. +..+ +. .+++|++|+++++ .++.++.
T Consensus 60 ~~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~l---------p~---~l~~L~~L~Ls~N-~l~~l~~- 118 (622)
T 3g06_A 60 PAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSL---------PV---LPPGLLELSIFSN-PLTHLPA- 118 (622)
T ss_dssp CTTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCC-CSCC---------CC---CCTTCCEEEECSC-CCCCCCC-
T ss_pred CCCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCc-CCcC---------CC---CCCCCCEEECcCC-cCCCCCC-
Confidence 3689999999984 677753 57899999999985 6554 12 5789999999886 4555543
Q ss_pred CCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecC
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGG 164 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (767)
.+++|+.|++++|. ++.. + ..+++|++|++++|... .++ ..+++|+.|.+++
T Consensus 119 -----~l~~L~~L~L~~N~-l~~l-----p-~~l~~L~~L~Ls~N~l~-~l~---------------~~~~~L~~L~L~~ 170 (622)
T 3g06_A 119 -----LPSGLCKLWIFGNQ-LTSL-----P-VLPPGLQELSVSDNQLA-SLP---------------ALPSELCKLWAYN 170 (622)
T ss_dssp -----CCTTCCEEECCSSC-CSCC-----C-CCCTTCCEEECCSSCCS-CCC---------------CCCTTCCEEECCS
T ss_pred -----CCCCcCEEECCCCC-CCcC-----C-CCCCCCCEEECcCCcCC-CcC---------------CccCCCCEEECCC
Confidence 47899999999875 3332 1 24689999999988532 211 1235788888887
Q ss_pred CCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCch
Q 004225 165 YSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSL 244 (767)
Q Consensus 165 ~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 244 (767)
+........+.+|+.|.++++. +..+. ..+++|+.|++.++. +..++ ..+++|++|++++| .++.++
T Consensus 171 N~l~~l~~~~~~L~~L~Ls~N~-l~~l~----~~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N-~L~~lp--- 237 (622)
T 3g06_A 171 NQLTSLPMLPSGLQELSVSDNQ-LASLP----TLPSELYKLWAYNNR-LTSLP---ALPSGLKELIVSGN-RLTSLP--- 237 (622)
T ss_dssp SCCSCCCCCCTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSC-CSSCC---CCCTTCCEEECCSS-CCSCCC---
T ss_pred CCCCCCcccCCCCcEEECCCCC-CCCCC----CccchhhEEECcCCc-ccccC---CCCCCCCEEEccCC-ccCcCC---
Confidence 7653222556788999988865 55441 235899999998864 34433 24689999999987 555554
Q ss_pred hhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCC
Q 004225 245 IAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPD 320 (767)
Q Consensus 245 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 320 (767)
..+++|++|+++++. ++.++. . +++|+.|+++++ +++.++. ....+++|+.|++.+++-
T Consensus 238 --~~l~~L~~L~Ls~N~-L~~lp~---~--------~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 --VLPSELKELMVSGNR-LTSLPM---L--------PSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp --CCCTTCCEEECCSSC-CSCCCC---C--------CTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCC
T ss_pred --CCCCcCcEEECCCCC-CCcCCc---c--------cccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCC
Confidence 347899999999974 666655 2 789999999987 6777764 356799999999999963
No 108
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.40 E-value=4.1e-13 Score=151.17 Aligned_cols=284 Identities=14% Similarity=0.096 Sum_probs=141.9
Q ss_pred CCCCccEEeeecCCCcccccc---CccccCcCCCceeeeeccCCcceE-------------Eecc--c---hhhcccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFS---SSTVSSFVQLQCIEIVGCPVLEEL-------------IVMD--N---QEERKKNIV 62 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~---~~~~~~l~~L~~L~l~~~~~l~~~-------------~~~~--~---~~~~~~~~~ 62 (767)
.+++|++|+++++. +..... ...+..+++|++|++.+|. +..+ .... . .......+.
T Consensus 190 ~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 57889999988764 221100 1123467888888888864 2211 0000 0 000111223
Q ss_pred CCCccceeecccccccccccCCCCcccCCCCccEEEeccCCccccccc-ccccccccCCCceeeeCCcccccccccCCCc
Q 004225 63 MFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTT-SIFTERVFPNLEKLKVDAKHVVTNKYHLGDE 141 (767)
Q Consensus 63 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 141 (767)
.+++|++|.+.++. ...++.. ...+++|++|++++|. +..... ..+ ..+++|++|++.++. .+
T Consensus 268 ~~~~L~~L~l~~~~-~~~l~~~---~~~~~~L~~L~Ls~~~-l~~~~~~~~~--~~~~~L~~L~L~~~~--~~------- 331 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG-PNEMPIL---FPFAAQIRKLDLLYAL-LETEDHCTLI--QKCPNLEVLETRNVI--GD------- 331 (592)
T ss_dssp CCTTCCEEEETTCC-TTTGGGG---GGGGGGCCEEEETTCC-CCHHHHHHHH--TTCTTCCEEEEEGGG--HH-------
T ss_pred ccccccccCccccc-hhHHHHH---HhhcCCCcEEecCCCc-CCHHHHHHHH--HhCcCCCEEeccCcc--CH-------
Confidence 33444444443321 1111111 2235566666666665 322111 111 245666666665221 11
Q ss_pred chhcchhhHhhhccccceeeecC----------CCCCCC------cccccCCceeeeeecccccchhhcccc-ccccccE
Q 004225 142 RTILSLGDFLQRLHTMKVLQIGG----------YSASLP------YEKVENGMWVEIREAFHLEHILIRESS-VTNNLVI 204 (767)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~----------~~~~~~------~~~~~~l~~l~i~~~~~l~~~~~~~~~-~~~~L~~ 204 (767)
..+......+++|+.|.++. |..... ...+++|+.|.+ .|.++....+.... .+++|++
T Consensus 332 ---~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~ 407 (592)
T 3ogk_B 332 ---RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCD 407 (592)
T ss_dssp ---HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCE
T ss_pred ---HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcE
Confidence 12223345667777777773 333211 123557777777 45555443333222 2667888
Q ss_pred EEecC---CCccccccC------CCCcCCCCCEEEeccCcc-chhhcCchhhhccccCcEEeEccccccchh--cccccc
Q 004225 205 LRVKG---CDHLVNLVP------PSTSFQNLTNMVVSRCNN-LKIVLTSLIAKTLVRLRYMKIKSCDRITEI--VQGDDV 272 (767)
Q Consensus 205 L~i~~---~~~~~~~~~------~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~--~~~~~~ 272 (767)
|++.+ |+.++..+. ....+++|++|+++.|.+ +.+.....+...+++|++|++++|. +... +.....
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~ 486 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRG 486 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTC
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhc
Confidence 88763 444443211 133477788888877664 3443333334457778888887765 3221 111112
Q ss_pred ccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 273 VAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 273 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
+++|++|++++|+ ++.-........+|+|++|++++|.
T Consensus 487 --------~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 487 --------CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp --------CTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred --------CcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 6788888888887 4432211112357888888888886
No 109
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.39 E-value=1.1e-11 Score=146.44 Aligned_cols=374 Identities=13% Similarity=0.131 Sum_probs=251.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-CCC-------------------hHHHHhcCchHHHHhhccCC------CCHH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-LPP-------------------SEKVIQSGVVARFVEFLTRE------DNPQ 414 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~-------------------~~~i~~~g~i~~L~~ll~~~------~~~~ 414 (767)
++.+...+.+.++.++..|+..+..++ ... .... -..+++.++..+... ++..
T Consensus 268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d~~d~~~~ 346 (861)
T 2bpt_A 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNEDPEDDDWN 346 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC-CCCCCH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccccccccCc
Confidence 455566777889999999999998887 210 0111 145678888877752 2257
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCc-hhHHHHHhcCCHHHHHHHHccCC
Q 004225 415 LQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSP-RDRDLVLSEKALIPLLAQLNKHA 493 (767)
Q Consensus 415 ~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~ll~~~~ 493 (767)
++..|..+|..++....+.++ ..+++.+.+.+.+.++.+|..|+++++.++.+.. +.....+. .+++.+++.+ .++
T Consensus 347 ~r~~a~~~L~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l-~d~ 423 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCGNHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLM-NDQ 423 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGG-GCS
T ss_pred HHHHHHHHHHHHHHHccHhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHc-CCC
Confidence 899999999999871111111 1356777778888999999999999999997643 22222222 3677788888 788
Q ss_pred ChHHHHHHHHHHHhhcCCCCC--CCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh----hHHHHHHhcCcHH
Q 004225 494 KPSMLRNATKTLSRFCQGKPE--PPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTN----DKIQAVIEADVCP 567 (767)
Q Consensus 494 ~~~~~~~~~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~~~ 567 (767)
++.+|..++|++++++..... ........++|.++..+.++ +.++..+++++.+++.... ....... ..+++
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~ 501 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVD 501 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHH
Confidence 999999999999999865311 12345678899999988776 8999999999999885421 1111111 13678
Q ss_pred HHHHHhcCCCCCCcccchHHHHHhhhhccCCccee-eh-------------------------------hhhHHHHHHHh
Q 004225 568 RLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQ-CT-------------------------------GIAKEACRTIS 615 (767)
Q Consensus 568 ~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l-------------------------------~v~~~a~~~l~ 615 (767)
.++..+.+.+....++..++.+++.++...+.... ++ .++..++.+++
T Consensus 502 ~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 581 (861)
T 2bpt_A 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLA 581 (861)
T ss_dssp HHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHH
Confidence 88899986552127899999999999865443211 00 23445666666
Q ss_pred hhccCCHHHHHHHHHcCCHHHHHHHHhcCCc-hhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHH
Q 004225 616 NITAGNREQIQVVIDAGVIGPLVDLLQNAEF-FTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTI 694 (767)
Q Consensus 616 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 694 (767)
+++........... ..+++.+...++..+. .++..++.+++.++.....+...++- .+++.+...+++++++++..
T Consensus 582 ~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~vr~~ 658 (861)
T 2bpt_A 582 AVIRKSPSSVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQVDSPVSIT 658 (861)
T ss_dssp HHHHHCGGGTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHhhhhhHHHH-HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhccccHHHHHH
Confidence 66653222111111 1366778888888777 89999999999988642222222222 27888888888888999999
Q ss_pred HHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCC--hHHHHHHHHHHHHh
Q 004225 695 CLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDS--NGICEKAVKILEIY 757 (767)
Q Consensus 695 al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~--~~v~~~a~~~l~~~ 757 (767)
+++++..++...+. ...+|...+ ++.+.+.+.+++ ++++..|..++..+
T Consensus 659 a~~~l~~l~~~~~~---------~~~~~~~~l-----~~~l~~~l~~~~~~~~vr~~~~~~l~~l 709 (861)
T 2bpt_A 659 AVGFIADISNSLEE---------DFRRYSDAM-----MNVLAQMISNPNARRELKPAVLSVFGDI 709 (861)
T ss_dssp HHHHHHHHHHHTGG---------GGHHHHHHH-----HHHHHHHHHCTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhch---------hccchHHHH-----HHHHHHHhCCccccHhhhHHHHHHHHHH
Confidence 99999999876542 223344333 566666666654 88998888888655
No 110
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=1.1e-11 Score=133.86 Aligned_cols=131 Identities=21% Similarity=0.202 Sum_probs=69.2
Q ss_pred ccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCc
Q 004225 174 VENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLR 253 (767)
Q Consensus 174 ~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 253 (767)
+++|+.|.+.++..++.+.......+++|++|+++++. +..+ +....+++|++|+++++. ++.+.+.. +.++++|+
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~ 245 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDM-PNLTPLVGLEELEMSGNH-FPEIRPGS-FHGLSSLK 245 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSC-CCCTTCTTCCEEECTTSC-CSEECGGG-GTTCTTCC
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccc-ccccccccccEEECcCCc-CcccCccc-ccCccCCC
Confidence 34444555555545554433333445677777776653 2332 345566677777776654 33332222 34566777
Q ss_pred EEeEccccccchhccc-cccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 254 YMKIKSCDRITEIVQG-DDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 254 ~L~i~~c~~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
+|+++++. +..+... ... +++|+.|+++++ +++.++.. ....+++|++|++.++|
T Consensus 246 ~L~L~~n~-l~~~~~~~~~~--------l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 246 KLWVMNSQ-VSLIERNAFDG--------LASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTSC-CCEECTTTTTT--------CTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred EEEeCCCc-CceECHHHhcC--------CCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCCC
Confidence 77776654 3333222 112 567777777665 45555432 12346667777766654
No 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.36 E-value=3.1e-11 Score=129.77 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=56.7
Q ss_pred CCCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccccccccc
Q 004225 3 CGIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFC 82 (767)
Q Consensus 3 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (767)
..+++|++|+++++. +..++ ...++|++|+++++. +..+ +.+..+++|++|+++++ .++.++
T Consensus 108 ~~~~~L~~L~l~~n~-l~~l~-----~~~~~L~~L~L~~n~-l~~l----------p~~~~l~~L~~L~l~~N-~l~~lp 169 (454)
T 1jl5_A 108 ELPQSLKSLLVDNNN-LKALS-----DLPPLLEYLGVSNNQ-LEKL----------PELQNSSFLKIIDVDNN-SLKKLP 169 (454)
T ss_dssp CCCTTCCEEECCSSC-CSCCC-----SCCTTCCEEECCSSC-CSSC----------CCCTTCTTCCEEECCSS-CCSCCC
T ss_pred cccCCCcEEECCCCc-cCccc-----CCCCCCCEEECcCCC-CCCC----------cccCCCCCCCEEECCCC-cCcccC
Confidence 344566777776653 44432 112578888887764 4433 23556777777777775 344443
Q ss_pred CCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 83 TGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 83 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
. .+++|++|++++|. +... +. + ..+++|++|++++|.
T Consensus 170 ~------~~~~L~~L~L~~n~-l~~l-~~-~--~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 170 D------LPPSLEFIAAGNNQ-LEEL-PE-L--QNLPFLTAIYADNNS 206 (454)
T ss_dssp C------CCTTCCEEECCSSC-CSSC-CC-C--TTCTTCCEEECCSSC
T ss_pred C------CcccccEEECcCCc-CCcC-cc-c--cCCCCCCEEECCCCc
Confidence 2 23577777777764 2222 22 2 356777777777664
No 112
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.35 E-value=5e-11 Score=140.94 Aligned_cols=357 Identities=14% Similarity=0.162 Sum_probs=238.5
Q ss_pred HHHHHhhhcCC--CHHHHHHHHHHHHHhc-CCChHHHH--hcCchHHHHhhccCCC-CHHHHHHHHHHHHHHHh---hhh
Q 004225 361 LPGMLAGVWSD--DSGLQLEATTWFRKLL-LPPSEKVI--QSGVVARFVEFLTRED-NPQLQLEAARALTNIAS---ENT 431 (767)
Q Consensus 361 i~~l~~~l~s~--~~~~~~~a~~~L~~l~-~~~~~~i~--~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~---~~~ 431 (767)
+|.+++.+.++ ++.++..|+..+..++ ....+.+. -..+++.+.+.+.+++ +..+|..|+.++..++. ...
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899888 9999999999999988 21112111 2345677788888762 38999999999999886 111
Q ss_pred -HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcC
Q 004225 432 -NVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 432 -~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 510 (767)
.......+++.+...+.+.+++++..++.++..++...+......+...+++.++..+ .+.++.++..++.++.+++.
T Consensus 210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHH
Confidence 0111112577778888888999999999999999976554433333446788888887 78889999999999888875
Q ss_pred CC----------------C---CCCcc--chhchHHHHHHHhcC-------CCHHHHHHHHHHHHhhccCChhHHHHHHh
Q 004225 511 GK----------------P---EPPFD--QVRPALPALAQLVHS-------NDNDVLRYACEALSCLSDGTNDKIQAVIE 562 (767)
Q Consensus 511 ~~----------------~---~~~~~--~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 562 (767)
.. + ..... ....++|.++..+.. ++..++..+..++..++....+. +..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~ 365 (876)
T 1qgr_A 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP 365 (876)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHH
T ss_pred HHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hHH
Confidence 31 1 11111 125677888887752 34678999999998887543321 111
Q ss_pred cCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCH-HHHHHHHHcCCHHHHHHHH
Q 004225 563 ADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNR-EQIQVVIDAGVIGPLVDLL 641 (767)
Q Consensus 563 ~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~i~~L~~ll 641 (767)
.+++.+...+.+.++ .++..|+++++.++.+.. +.....+ ..+++.++..+
T Consensus 366 -~~l~~l~~~l~~~~~--------------------------~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l 417 (876)
T 1qgr_A 366 -HVLPFIKEHIKNPDW--------------------------RYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELM 417 (876)
T ss_dssp -HHHHHHHHHTTCSSH--------------------------HHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHH
T ss_pred -HHHHHHHHHccCCCh--------------------------HHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHh
Confidence 366777788888877 777888888888877543 3333333 34789999999
Q ss_pred hcCCchhHHHHHHHHHHhhcCCCHHH--HHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhh-----ccCC
Q 004225 642 QNAEFFTKKEAARAISNAISGGTHEQ--IKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEM-----NTGT 714 (767)
Q Consensus 642 ~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~-----~~~~ 714 (767)
.++++.+|..|++++++++....+.. ... + ..+++.++..+.+. +.++..+++++.+++....... ....
T Consensus 418 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~ 494 (876)
T 1qgr_A 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVY-L-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEP 494 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-H-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhcccHHH-H-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999987532110 011 1 13567777888774 8999999999999998654110 0000
Q ss_pred ccccccHHHHHHHhhchHHHHHHHhcCC---ChHHHHHHHHHHHHh
Q 004225 715 ANRYFNHYARLVEAAEGFKKIEDLKRHD---SNGICEKAVKILEIY 757 (767)
Q Consensus 715 ~~~~~~~~~~~l~~~g~~~~l~~l~~~~---~~~v~~~a~~~l~~~ 757 (767)
......+|... .++.+..++... +..++..+.+++..+
T Consensus 495 ~~~~l~~~~~~-----il~~L~~~l~~~~~~~~~~r~~~~~~l~~l 535 (876)
T 1qgr_A 495 ATYCLSSSFEL-----IVQKLLETTDRPDGHQNNLRSSAYESLMEI 535 (876)
T ss_dssp CCCSSTTTHHH-----HHHHHHHHTTSCSSCSTTHHHHHHHHHHHH
T ss_pred cchhhhHhHHH-----HHHHHHHHHhCcCcchhhHHHHHHHHHHHH
Confidence 00012223333 356666666553 346776666666554
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.35 E-value=6.6e-11 Score=127.20 Aligned_cols=227 Identities=15% Similarity=0.125 Sum_probs=117.1
Q ss_pred CccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchh
Q 004225 65 PQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTI 144 (767)
Q Consensus 65 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 144 (767)
++|++|+++++ .++.+|. ...+++|++|++++|. ++.. + ...++|++|++++|.... ++
T Consensus 131 ~~L~~L~L~~n-~l~~lp~----~~~l~~L~~L~l~~N~-l~~l-p-----~~~~~L~~L~L~~n~l~~-l~-------- 189 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLPE----LQNSSFLKIIDVDNNS-LKKL-P-----DLPPSLEFIAAGNNQLEE-LP-------- 189 (454)
T ss_dssp TTCCEEECCSS-CCSSCCC----CTTCTTCCEEECCSSC-CSCC-C-----CCCTTCCEEECCSSCCSS-CC--------
T ss_pred CCCCEEECcCC-CCCCCcc----cCCCCCCCEEECCCCc-Cccc-C-----CCcccccEEECcCCcCCc-Cc--------
Confidence 46666666655 3444441 3456666666666653 2221 1 123566667666654211 11
Q ss_pred cchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCC
Q 004225 145 LSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQ 224 (767)
Q Consensus 145 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 224 (767)
.+.++++|+.|.++++...........++.+.+.++. ++.+ +....+++|++|+++++. +..++ ..++
T Consensus 190 -----~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~-l~~l--p~~~~l~~L~~L~l~~N~-l~~l~---~~~~ 257 (454)
T 1jl5_A 190 -----ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI-LEEL--PELQNLPFLTTIYADNNL-LKTLP---DLPP 257 (454)
T ss_dssp -----CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSSC--CCCTTCTTCCEEECCSSC-CSSCC---SCCT
T ss_pred -----cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCc-CCcc--cccCCCCCCCEEECCCCc-CCccc---cccc
Confidence 1456677777777776542211223467777777663 4443 234456777777776643 22222 1246
Q ss_pred CCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcc---ccccc----cc-cccccc-cccceEeecCCCCc
Q 004225 225 NLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQ---GDDVV----AK-DEVITF-RELKELKLVDLERL 295 (767)
Q Consensus 225 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~---~~~~~----~~-~~~~~~-~~L~~L~l~~~~~l 295 (767)
+|++|++++|. ++.++. .+++|++|++++|. ++.++. ..... +. .....+ ++|+.|+++++ ++
T Consensus 258 ~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l 329 (454)
T 1jl5_A 258 SLEALNVRDNY-LTDLPE-----LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KL 329 (454)
T ss_dssp TCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CC
T ss_pred ccCEEECCCCc-ccccCc-----ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cc
Confidence 67777776654 333321 13556666666553 222110 00000 00 000012 46777777664 34
Q ss_pred ccccCCCccccCCccceEeecCCCCcccccccCCCCcccchhhccc
Q 004225 296 TSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHG 341 (767)
Q Consensus 296 ~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~ 341 (767)
+.++. .+++|++|++++| .++.+|. ..++|+.+++++
T Consensus 330 ~~lp~-----~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 330 IELPA-----LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEY 366 (454)
T ss_dssp SCCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred ccccc-----cCCcCCEEECCCC-ccccccc---hhhhccEEECCC
Confidence 44442 3578888888887 5666665 235677777765
No 114
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.35 E-value=4.5e-11 Score=140.99 Aligned_cols=350 Identities=13% Similarity=0.128 Sum_probs=236.9
Q ss_pred HHHHHhhhcCC-CHHHHHHHHHHHHHhc-C--CChH--HHHhcCchHHHHhhccCCC-CHHHHHHHHHHHHHHHh--h-h
Q 004225 361 LPGMLAGVWSD-DSGLQLEATTWFRKLL-L--PPSE--KVIQSGVVARFVEFLTRED-NPQLQLEAARALTNIAS--E-N 430 (767)
Q Consensus 361 i~~l~~~l~s~-~~~~~~~a~~~L~~l~-~--~~~~--~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~--~-~ 430 (767)
+|.+++.+.++ ++.++..|+..+..++ . +..+ .-....+++.+...+.+++ ++.+|..|+.++..+.. . .
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 215 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999988 9999999999999888 2 2110 0012235677777888762 38999999999998865 1 1
Q ss_pred hH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhc
Q 004225 431 TN-VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 431 ~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 509 (767)
.. .......++.+...+.++++++|..++.++..++...+......+....++.+...+ .+.+.+++..++.++..++
T Consensus 216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM-KSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHT-TCSSHHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHH
Confidence 00 000112567777788889999999999999999865443222222224666677777 7788999999999998887
Q ss_pred CCC-------------CC--CCc--cchhchHHHHHHHhcCC-------CHHHHHHHHHHHHhhccCChhHHHHHHhcCc
Q 004225 510 QGK-------------PE--PPF--DQVRPALPALAQLVHSN-------DNDVLRYACEALSCLSDGTNDKIQAVIEADV 565 (767)
Q Consensus 510 ~~~-------------~~--~~~--~~~~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 565 (767)
... +. ... .....++|.++..+... +..++..+..++..++....+.. . ..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~---~-~~l 370 (861)
T 2bpt_A 295 EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI---L-EPV 370 (861)
T ss_dssp HHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG---H-HHH
T ss_pred HHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhH---H-HHH
Confidence 542 00 111 12356788888888642 35788999999988885432211 1 135
Q ss_pred HHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCC-HHHHHHHHHcCCHHHHHHHHhcC
Q 004225 566 CPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGN-REQIQVVIDAGVIGPLVDLLQNA 644 (767)
Q Consensus 566 ~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~ 644 (767)
++.+.+.+.+.++ .++..|+++++.++.+. ++.....+. .+++.++..+.+.
T Consensus 371 ~~~l~~~l~~~~~--------------------------~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~ 423 (861)
T 2bpt_A 371 LEFVEQNITADNW--------------------------RNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQ 423 (861)
T ss_dssp HHHHHHHTTCSSH--------------------------HHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCS
T ss_pred HHHHHHHcCCCCh--------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCC
Confidence 6777778887777 67778888888888754 344443333 4788899999999
Q ss_pred CchhHHHHHHHHHHhhcCCC-----HHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccc
Q 004225 645 EFFTKKEAARAISNAISGGT-----HEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYF 719 (767)
Q Consensus 645 ~~~v~~~a~~~L~nl~~~~~-----~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~ 719 (767)
++.+|..++|++++++.... ..... .+++.++..+++. +.++..|++++.+++....... .. ..
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~--~~---~l 492 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQHLP-----GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEAT--PS---PI 492 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTTHH-----HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSS--SC---GG
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHHHH-----HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhccccc--ch---hh
Confidence 99999999999999985311 11122 2567777788775 8999999999999987643100 00 12
Q ss_pred cHHHHHHHhhchHHHHHHHhcCCC--hHHHHHHHHHHHHhc
Q 004225 720 NHYARLVEAAEGFKKIEDLKRHDS--NGICEKAVKILEIYW 758 (767)
Q Consensus 720 ~~~~~~l~~~g~~~~l~~l~~~~~--~~v~~~a~~~l~~~~ 758 (767)
.+|...+ ++.+..++.+.+ ++++..|.+++..+.
T Consensus 493 ~~~~~~i-----l~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 493 YNFYPAL-----VDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp GGGHHHH-----HHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 2333333 667777776533 778888888877664
No 115
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.3e-11 Score=128.73 Aligned_cols=254 Identities=15% Similarity=0.162 Sum_probs=147.0
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
.++|++|+++++. ++.+++ ..+..+++|++|+++++. +.++. +..+..+++|++|+++++ .++.++..
T Consensus 51 ~~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~--------~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 118 (353)
T 2z80_A 51 TEAVKSLDLSNNR-ITYISN-SDLQRCVNLQALVLTSNG-INTIE--------EDSFSSLGSLEHLDLSYN-YLSNLSSS 118 (353)
T ss_dssp CTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CCEEC--------TTTTTTCTTCCEEECCSS-CCSSCCHH
T ss_pred cccCcEEECCCCc-CcccCH-HHhccCCCCCEEECCCCc-cCccC--------HhhcCCCCCCCEEECCCC-cCCcCCHh
Confidence 4589999999975 676643 345789999999999884 66541 134667899999999986 45555533
Q ss_pred CCcccCCCCccEEEeccCCccccccc-ccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeec
Q 004225 85 DLDILEFPSLKELRISKCPEFMVRTT-SIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIG 163 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (767)
. ...+++|++|+++++.. ..... ..+ ..+++|++|++++|..+...++ ..+.++++|+.|.++
T Consensus 119 ~--~~~l~~L~~L~L~~n~l-~~l~~~~~~--~~l~~L~~L~l~~n~~~~~~~~-----------~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 119 W--FKPLSSLTFLNLLGNPY-KTLGETSLF--SHLTKLQILRVGNMDTFTKIQR-----------KDFAGLTFLEELEID 182 (353)
T ss_dssp H--HTTCTTCSEEECTTCCC-SSSCSSCSC--TTCTTCCEEEEEESSSCCEECT-----------TTTTTCCEEEEEEEE
T ss_pred H--hCCCccCCEEECCCCCC-cccCchhhh--ccCCCCcEEECCCCccccccCH-----------HHccCCCCCCEEECC
Confidence 2 34689999999998853 33222 223 3789999999998864443221 235667888888887
Q ss_pred CCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccchhhcC
Q 004225 164 GYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLKIVLT 242 (767)
Q Consensus 164 ~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~ 242 (767)
++.. ..+.......+++|++|+++++.. ..++.. ...+++|++|+++++.- +....
T Consensus 183 ~n~l---------------------~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~ 239 (353)
T 2z80_A 183 ASDL---------------------QSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDL-DTFHF 239 (353)
T ss_dssp ETTC---------------------CEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBC-TTCCC
T ss_pred CCCc---------------------CccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcc-ccccc
Confidence 7652 111112222345566666655432 222111 12355666666665532 22211
Q ss_pred chh--hhccccCcEEeEccccc----cchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeec
Q 004225 243 SLI--AKTLVRLRYMKIKSCDR----ITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVD 316 (767)
Q Consensus 243 ~~~--~~~l~~L~~L~i~~c~~----l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~ 316 (767)
..+ ....+.++.+++.++.- +..++..... +++|+.|+++++ +++.++.. ....+++|++|++.
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~--------l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ--------ISGLLELEFSRN-QLKSVPDG-IFDRLTSLQKIWLH 309 (353)
T ss_dssp C------CCCCCCEEEEESCBCCHHHHHHHHHHHHT--------CTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECC
T ss_pred cccccccccchhhccccccccccCcchhhhHHHHhc--------ccCCCEEECCCC-CCCccCHH-HHhcCCCCCEEEee
Confidence 110 11234455555554431 1122222222 667777777765 45555532 12356777777777
Q ss_pred CCC
Q 004225 317 DCP 319 (767)
Q Consensus 317 ~c~ 319 (767)
+++
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 116
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.33 E-value=3.5e-11 Score=134.63 Aligned_cols=312 Identities=15% Similarity=0.091 Sum_probs=225.8
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
.+..+.+-++++++.++-.|+.+|+++..+. +. ..+++.+.+++.+++ +.+|..|+.++.++.....+. + .+.
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~---~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~-v-~~~ 180 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSSE---MC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPEL-M-EMF 180 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGG-G-GGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH---HH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHH-H-HHH
Confidence 4667788889999999999999999988432 22 356788899999988 999999999999999822221 2 267
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHcc--------------CCChHHHHHHHHHH
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNK--------------HAKPSMLRNATKTL 505 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--------------~~~~~~~~~~~~~L 505 (767)
++.+..+|.+.|+.++..|+.++..++..+++....+ ...++.+++.|.+ ..++..+..++.++
T Consensus 181 ~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L 258 (618)
T 1w63_A 181 LPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL 258 (618)
T ss_dssp GGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH
Confidence 8888899999999999999999999997765432233 2578888887742 35888999999999
Q ss_pred HhhcCCCCCCCccchhchHHHHHHHhc------CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCC
Q 004225 506 SRFCQGKPEPPFDQVRPALPALAQLVH------SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPF 579 (767)
Q Consensus 506 ~~l~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 579 (767)
..++..++. .....++.|..++. +.+..++..+++++..+... +.... .+++.+..++.+.++
T Consensus 259 ~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~~-----~a~~~L~~~L~~~d~- 327 (618)
T 1w63_A 259 RILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLRV-----LAINILGRFLLNNDK- 327 (618)
T ss_dssp HHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHHH-----HHHHHHHHHHTCSST-
T ss_pred HHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHHH-----HHHHHHHHHHhCCCC-
Confidence 999876422 22345555666553 23468999999999987543 21111 356788889999988
Q ss_pred CcccchHHHHHhhhhccCCccee-------------ehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCc
Q 004225 580 PFGLTPPLWTVRYIVKGDGFLTQ-------------CTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEF 646 (767)
Q Consensus 580 ~~v~~~a~~~L~~l~~~~~~~~~-------------~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 646 (767)
.++..|+.+++.++...+...+ ...++..|+.++..++...+ .+. +++.+...+...+.
T Consensus 328 -~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~ 399 (618)
T 1w63_A 328 -NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEP 399 (618)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCH
T ss_pred -chHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCH
Confidence 9999999999999865432111 01788888888888877432 111 45678888888889
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 647 FTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 647 ~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
++|..++.+++.++....+.. .. .++.|+++++..+..+...+..++..++..
T Consensus 400 e~r~~~v~~I~~la~k~~~~~-~~-----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~ 452 (618)
T 1w63_A 400 EFKADCASGIFLAAEKYAPSK-RW-----HIDTIMRVLTTAGSYVRDDAVPNLIQLITN 452 (618)
T ss_dssp HHHHHHHHHHHHHHHSSCCCH-HH-----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccH-HH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 999999999999987532222 22 356677777766666666666777777654
No 117
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.32 E-value=1.5e-11 Score=133.68 Aligned_cols=362 Identities=11% Similarity=0.063 Sum_probs=236.0
Q ss_pred HHHHHhhhcCC--CHHHHHHHHHHHHHhcCCC-h-------------HHHHhcCchHHHHhhccCCCCHHHHHHHHHHHH
Q 004225 361 LPGMLAGVWSD--DSGLQLEATTWFRKLLLPP-S-------------EKVIQSGVVARFVEFLTREDNPQLQLEAARALT 424 (767)
Q Consensus 361 i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~-~-------------~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~ 424 (767)
++.++..+.++ ++.++..|+..|+++.... . ..-....+-..+++.+.+++ +.+ ..++.++.
T Consensus 37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~ 114 (462)
T 1ibr_B 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVA 114 (462)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHH
Confidence 45566666654 6889999999999987211 0 01112234456777788777 677 88999999
Q ss_pred HHHh-hhhHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHHhcCC-chhHHHHHhcCCHHHHHHHHccCC--ChHHH
Q 004225 425 NIAS-ENTNVVIDGGAVPIFVKLLSSP--SDDVREKAVWALGNIARSS-PRDRDLVLSEKALIPLLAQLNKHA--KPSML 498 (767)
Q Consensus 425 ~l~~-~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~ 498 (767)
.++. +.... .-.+.+|.++..+.++ ++.++..|+.+++.++... ++...... ..+++.++..+ .++ +..+|
T Consensus 115 ~ia~~~~~~~-~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l-~~~~~~~~vr 191 (462)
T 1ibr_B 115 GIACAEIPVN-QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGM-RKEEPSNNVK 191 (462)
T ss_dssp HHHHHHGGGT-CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHH-STTCCCHHHH
T ss_pred HHHHHhcccc-ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHh-CCCCCCHHHH
Confidence 9988 32210 1356889999999888 9999999999999999643 22111111 13667788888 555 78999
Q ss_pred HHHHHHHHhhcCCCC-C-CCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCC
Q 004225 499 RNATKTLSRFCQGKP-E-PPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHP 576 (767)
Q Consensus 499 ~~~~~~L~~l~~~~~-~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 576 (767)
..+++++.++..... . ........+++.+...+.+.+.+++..+++++..++...+......+..++++.++..+++.
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (462)
T 1ibr_B 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD 271 (462)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999998764321 0 01111122577777777888999999999999999865543322222225777788888887
Q ss_pred CCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhc--------cCCHHHHHHHHHcCCHHHHHHHHhc-----
Q 004225 577 LPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNIT--------AGNREQIQVVIDAGVIGPLVDLLQN----- 643 (767)
Q Consensus 577 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~--------~~~~~~~~~~~~~~~i~~L~~ll~~----- 643 (767)
+. +++..|+..+..++.... .. ....+-. .......+..+ ..++|.+++.+..
T Consensus 272 ~~--~v~~~a~~~l~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~ 337 (462)
T 1ibr_B 272 ID--EVALQGIEFWSNVCDEEM----------DL-AIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDEND 337 (462)
T ss_dssp SH--HHHHHHHHHHHHHHHHHH----------HH-HHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSC
T ss_pred ch--HHHHHHHHHHHHHHHHHH----------HH-HHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhccccc
Confidence 77 777777777766653210 00 0000000 00000011011 2356667777743
Q ss_pred --CCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccH
Q 004225 644 --AEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNH 721 (767)
Q Consensus 644 --~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~ 721 (767)
.++.+|..|+.+|..++........ ..+++.+...+.+.++.++..|+.++..++....... ..
T Consensus 338 ~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~--------~~- 403 (462)
T 1ibr_B 338 DDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ--------LK- 403 (462)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT--------TC-
T ss_pred ccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH--------HH-
Confidence 2457899999999999875332211 2367778888889999999999999999986432110 01
Q ss_pred HHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 722 YARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 722 ~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
..+ ..+++.+...+.++++.|+..|.+++.++..
T Consensus 404 --~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 404 --PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp --TTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred --HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 111 3567888999999999999999999998854
No 118
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.31 E-value=5.2e-11 Score=120.07 Aligned_cols=204 Identities=13% Similarity=0.098 Sum_probs=90.2
Q ss_pred CCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcch
Q 004225 64 FPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERT 143 (767)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 143 (767)
+++|++|+++++ .++.++... ...+++|++|+++++. +....+..+ ..+++|++|++++|..+....
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n~~l~~~~------- 97 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAAS--FRACRNLTILWLHSNV-LARIDAAAF--TGLALLEQLDLSDNAQLRSVD------- 97 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTT--TTTCTTCCEEECCSSC-CCEECTTTT--TTCTTCCEEECCSCTTCCCCC-------
T ss_pred CCCceEEEeeCC-cCCccCHHH--cccCCCCCEEECCCCc-cceeCHhhc--CCccCCCEEeCCCCCCccccC-------
Confidence 345666666553 233343222 2345566666665553 222222222 245666666666554222211
Q ss_pred hcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCC-CCc
Q 004225 144 ILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPP-STS 222 (767)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~ 222 (767)
...+..+++|+.|.++++.. ..+.......+++|++|+++++.. ..+... ...
T Consensus 98 ----~~~~~~l~~L~~L~l~~n~l---------------------~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~ 151 (285)
T 1ozn_A 98 ----PATFHGLGRLHTLHLDRCGL---------------------QELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRD 151 (285)
T ss_dssp ----TTTTTTCTTCCEEECTTSCC---------------------CCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTT
T ss_pred ----HHHhcCCcCCCEEECCCCcC---------------------CEECHhHhhCCcCCCEEECCCCcc-cccCHhHhcc
Confidence 01233445555555555431 111111122345566666655432 222222 344
Q ss_pred CCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchh-ccccccccccccccccccceEeecCCCCcccccCC
Q 004225 223 FQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEI-VQGDDVVAKDEVITFRELKELKLVDLERLTSFCSG 301 (767)
Q Consensus 223 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 301 (767)
+++|++|+++++ .++.++... +..+++|++|+++++. +..+ +..... +++|+.|+++++ +++.++..
T Consensus 152 l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~ 219 (285)
T 1ozn_A 152 LGNLTHLFLHGN-RISSVPERA-FRGLHSLDRLLLHQNR-VAHVHPHAFRD--------LGRLMTLYLFAN-NLSALPTE 219 (285)
T ss_dssp CTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCEECTTTTTT--------CTTCCEEECCSS-CCSCCCHH
T ss_pred CCCccEEECCCC-cccccCHHH-hcCccccCEEECCCCc-ccccCHhHccC--------cccccEeeCCCC-cCCcCCHH
Confidence 556666666555 233332221 2345666666666554 2222 211111 556666666654 33333311
Q ss_pred CccccCCccceEeecCCC
Q 004225 302 NCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 302 ~~~~~~~~L~~L~i~~c~ 319 (767)
....+++|++|++.+++
T Consensus 220 -~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 220 -ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -HHTTCTTCCEEECCSSC
T ss_pred -HcccCcccCEEeccCCC
Confidence 12345566666665553
No 119
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.31 E-value=8.3e-11 Score=131.64 Aligned_cols=293 Identities=16% Similarity=0.097 Sum_probs=200.5
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGG 438 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~ 438 (767)
..+..++.+.+.+.+.+.-+.-++..++....+... -+++.+.+-+++++ +.++..|+++|+++.. +.. ..
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~~~~~-----~~ 142 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGSSEMC-----RD 142 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCCHHHH-----HH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCCHHHH-----HH
Confidence 467778888899999998888888888844444322 24788888899888 8999999999999986 322 24
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
+++.+.+++.+.++.+|..|+.++.++....++..+ +.++.+..++ .+.++.++..|++++..++..++.. ..
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~ 215 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LA 215 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HH
Confidence 578889999999999999999999999977665432 4667777788 7889999999999999998764321 12
Q ss_pred chhchHHHHHHHhcC---------------CCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCccc
Q 004225 519 QVRPALPALAQLVHS---------------NDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGL 583 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~ 583 (767)
.....+|.++.++.+ .++-.+..++.++..++...++..+ .+.+.+..++...+. .+
T Consensus 216 ~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~---~~ 287 (618)
T 1w63_A 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTET---SK 287 (618)
T ss_dssp HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCC---SS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcccc---cc
Confidence 334567777776653 4788899999999999987654332 344555555543211 00
Q ss_pred chHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCC
Q 004225 584 TPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGG 663 (767)
Q Consensus 584 ~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~ 663 (767)
++- . .+..+|++++..+... +.... .+++.|..++.+.++.+|..|..+|..++..
T Consensus 288 -~~~--------------~--aV~~ea~~~i~~l~~~-~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~- 343 (618)
T 1w63_A 288 -NVG--------------N--AILYETVLTIMDIKSE-SGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQT- 343 (618)
T ss_dssp -THH--------------H--HHHHHHHHHHHHSCCC-HHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH-
T ss_pred -chH--------------H--HHHHHHHHHHHhcCCC-HHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh-
Confidence 000 0 4555566666655332 22111 2456666677777777777777777777653
Q ss_pred CHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 664 THEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 664 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
.++. ++ .....++.++.+++..++..|+.++..++.
T Consensus 344 ~p~~----~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 344 DHNA----VQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp HHHH----HG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred CHHH----HH-HHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 2221 11 234566667777777777777777777764
No 120
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.30 E-value=4.3e-11 Score=114.65 Aligned_cols=188 Identities=22% Similarity=0.254 Sum_probs=132.3
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCC
Q 004225 437 GGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP 516 (767)
Q Consensus 437 ~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 516 (767)
.+.++.|+..|.++++.+|..|+++|+.+.. ..+++.|+..+ .++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 4567788888888888888888888877653 23567777777 67778888888888887753
Q ss_pred ccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhcc
Q 004225 517 FDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKG 596 (767)
Q Consensus 517 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~ 596 (767)
...++.|+.++.++++.++..++++|..+.. .+.++.+++++.++++
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~------------------ 126 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDW------------------ 126 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSH------------------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCH------------------
Confidence 2467778888888888888888888877753 1356777777877777
Q ss_pred CCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 004225 597 DGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGC 676 (767)
Q Consensus 597 ~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~ 676 (767)
.++..|+++++++.. ...++.|..++++.++.||..|+.+|+.+.. ++ +
T Consensus 127 --------~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~---------~ 175 (211)
T 3ltm_A 127 --------FVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---ER---------V 175 (211)
T ss_dssp --------HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH---------H
T ss_pred --------HHHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh---------H
Confidence 566666666665532 1356778888877788888888888888743 22 3
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 677 IKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 677 i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
++.|..+++++++.++..|.++|.++....
T Consensus 176 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 176 RAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 556667777788888888888888776543
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.30 E-value=1.5e-12 Score=134.95 Aligned_cols=86 Identities=19% Similarity=0.162 Sum_probs=51.7
Q ss_pred ccc-cccEEEecCCC-ccc--cccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcc-cccc
Q 004225 198 VTN-NLVILRVKGCD-HLV--NLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQ-GDDV 272 (767)
Q Consensus 198 ~~~-~L~~L~i~~~~-~~~--~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~ 272 (767)
.++ +|++|++++|. .+. .++.....+++|++|++++|..+++..... +..+++|++|++++|..+..... ....
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 270 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGE 270 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence 356 78888887774 232 122223457788888888877555443333 34578888888888764332211 1111
Q ss_pred ccccccccccccceEeecCC
Q 004225 273 VAKDEVITFRELKELKLVDL 292 (767)
Q Consensus 273 ~~~~~~~~~~~L~~L~l~~~ 292 (767)
+++|+.|++++|
T Consensus 271 --------~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 --------IPTLKTLQVFGI 282 (336)
T ss_dssp --------CTTCCEEECTTS
T ss_pred --------CCCCCEEeccCc
Confidence 678888888877
No 122
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=9.3e-12 Score=127.51 Aligned_cols=245 Identities=13% Similarity=0.142 Sum_probs=160.7
Q ss_pred CCCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccccccccc
Q 004225 3 CGIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFC 82 (767)
Q Consensus 3 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (767)
..+++|++|++++|. +...++ +..+++|++|+++++. +.++. ..++|++|+++++. +..++
T Consensus 55 ~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~-------------~~~~L~~L~l~~n~-l~~~~ 115 (317)
T 3o53_A 55 APFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNY-VQELL-------------VGPSIETLHAANNN-ISRVS 115 (317)
T ss_dssp TTCTTCCEEECTTSC-CEEEEE---ETTCTTCCEEECCSSE-EEEEE-------------ECTTCCEEECCSSC-CSEEE
T ss_pred hCCCcCCEEECCCCc-CCcchh---hhhcCCCCEEECcCCc-ccccc-------------CCCCcCEEECCCCc-cCCcC
Confidence 468899999999985 555543 4689999999999885 55542 24899999999864 55554
Q ss_pred CCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeee
Q 004225 83 TGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQI 162 (767)
Q Consensus 83 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 162 (767)
. ..+++|++|++++|..- ...+..+ ..+++|++|++++|..... ....+...+++|+.|.+
T Consensus 116 ~-----~~~~~L~~L~l~~N~l~-~~~~~~~--~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 116 C-----SRGQGKKNIYLANNKIT-MLRDLDE--GCRSRVQYLDLKLNEIDTV-----------NFAELAASSDTLEHLNL 176 (317)
T ss_dssp E-----CCCSSCEEEECCSSCCC-SGGGBCT--GGGSSEEEEECTTSCCCEE-----------EGGGGGGGTTTCCEEEC
T ss_pred c-----cccCCCCEEECCCCCCC-Cccchhh--hccCCCCEEECCCCCCCcc-----------cHHHHhhccCcCCEEEC
Confidence 3 34789999999988633 3322223 3689999999998864322 11223346778888888
Q ss_pred cCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcC
Q 004225 163 GGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLT 242 (767)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 242 (767)
+++.. +.+ +....+++|++|+++++. +..+++....+++|++|+++++ .++.++.
T Consensus 177 ~~N~l---------------------~~~--~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 177 QYNFI---------------------YDV--KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp TTSCC---------------------CEE--ECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred CCCcC---------------------ccc--ccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhh
Confidence 87752 222 112236788888888764 3444555667888999999887 4555543
Q ss_pred chhhhccccCcEEeEcccccc-chhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCc
Q 004225 243 SLIAKTLVRLRYMKIKSCDRI-TEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDM 321 (767)
Q Consensus 243 ~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 321 (767)
. +..+++|+.|++++++-. ..++..... +++|+.|.+.++..++......| ..+.+....-..|..+
T Consensus 232 ~--~~~l~~L~~L~l~~N~~~~~~~~~~~~~--------~~~L~~l~l~~~~~l~~~~~~~~--~~~~~~~~~~~cc~~l 299 (317)
T 3o53_A 232 A--LRFSQNLEHFDLRGNGFHCGTLRDFFSK--------NQRVQTVAKQTVKKLTGQNEEEC--TVPTLGHYGAYCCEDL 299 (317)
T ss_dssp T--CCCCTTCCEEECTTCCCBHHHHHHHHHT--------CHHHHHHHHHHHHHHHSSSSCCC--SSTTCEEETTEEEBCC
T ss_pred H--hhcCCCCCEEEccCCCccCcCHHHHHhc--------cccceEEECCCchhccCCchhcc--CCCceecccceeeccC
Confidence 2 356788999998887643 233222222 78888888887777766554322 2344444444456655
Q ss_pred c
Q 004225 322 K 322 (767)
Q Consensus 322 ~ 322 (767)
.
T Consensus 300 ~ 300 (317)
T 3o53_A 300 P 300 (317)
T ss_dssp T
T ss_pred C
Confidence 4
No 123
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.29 E-value=4.8e-13 Score=145.53 Aligned_cols=237 Identities=13% Similarity=0.087 Sum_probs=116.7
Q ss_pred CCCCccEEeeecCCCccccc---cCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCC-Cccceeecccccccc
Q 004225 4 GIQNLTRLTLSCCMNLRCLF---SSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMF-PQLQYLKMSDLEKFT 79 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~ 79 (767)
.+++|++|++++|. +.... -...+..+++|++|+++++. +.+. +...+...+... ++|++|++++|. +.
T Consensus 26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~----~~~~l~~~l~~~~~~L~~L~L~~n~-i~ 98 (461)
T 1z7x_W 26 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDV----GVHCVLQGLQTPSCKIQKLSLQNCC-LT 98 (461)
T ss_dssp HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHH----HHHHHHHTTCSTTCCCCEEECTTSC-CB
T ss_pred hcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChH----HHHHHHHHHhhCCCceeEEEccCCC-CC
Confidence 46889999999986 43210 01223567889999998875 3321 001111111111 168888888774 33
Q ss_pred c-----ccCCCCcccCCCCccEEEeccCCccccccccccc---ccccCCCceeeeCCcccccccccCCCcchhcchhhHh
Q 004225 80 S-----FCTGDLDILEFPSLKELRISKCPEFMVRTTSIFT---ERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFL 151 (767)
Q Consensus 80 ~-----~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (767)
. ++.. ...+++|++|++++|. +.......+. ....++|++|++++|..... ....+...+
T Consensus 99 ~~~~~~l~~~---l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--------~~~~l~~~l 166 (461)
T 1z7x_W 99 GAGCGVLSST---LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--------SCEPLASVL 166 (461)
T ss_dssp GGGHHHHHHH---TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--------GHHHHHHHH
T ss_pred HHHHHHHHHH---HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH--------HHHHHHHHH
Confidence 2 1211 3457788888888776 3221111111 01245688888877753221 111233445
Q ss_pred hhccccceeeecCCCCCCC----c-c----cccCCceeeeeecccccchh----hccccccccccEEEecCCCcccc---
Q 004225 152 QRLHTMKVLQIGGYSASLP----Y-E----KVENGMWVEIREAFHLEHIL----IRESSVTNNLVILRVKGCDHLVN--- 215 (767)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~~----~-~----~~~~l~~l~i~~~~~l~~~~----~~~~~~~~~L~~L~i~~~~~~~~--- 215 (767)
..+++|+.|.++++..... + . ..+.++.|.+++|. +.... ......+++|++|+++++..-..
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 5566777777766653110 0 0 12366666666663 32211 11122356666666666532110
Q ss_pred -ccCC-CCcCCCCCEEEeccCccchhhcC---chhhhccccCcEEeEcccc
Q 004225 216 -LVPP-STSFQNLTNMVVSRCNNLKIVLT---SLIAKTLVRLRYMKIKSCD 261 (767)
Q Consensus 216 -~~~~-~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~ 261 (767)
+... ...+++|++|++++| .+++... ...+..+++|++|+++++.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 0011 123566666666666 3333210 0112345666666666653
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.29 E-value=9.5e-11 Score=121.80 Aligned_cols=243 Identities=14% Similarity=0.123 Sum_probs=159.5
Q ss_pred cEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcc
Q 004225 9 TRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDI 88 (767)
Q Consensus 9 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (767)
++++.++ .+++.+| .++ .+++++|+++++. ++.+.. .....+++|++|+++++.-++.++.+. .
T Consensus 12 ~~v~C~~-~~Lt~iP-~~l---~~~l~~L~Ls~N~-i~~i~~--------~~f~~l~~L~~L~Ls~N~i~~~i~~~~--f 75 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIP-SDL---PRNAIELRFVLTK-LRVIQK--------GAFSGFGDLEKIEISQNDVLEVIEADV--F 75 (350)
T ss_dssp TEEEEES-TTCCSCC-TTC---CTTCSEEEEESCC-CSEECT--------TSSTTCTTCCEEEEECCTTCCEECTTS--B
T ss_pred CEEEecC-CCCCccC-cCc---CCCCCEEEccCCc-CCCcCH--------HHHcCCCCCCEEECcCCCCCCccChhH--h
Confidence 4455444 3466664 222 3578899988874 666521 234668889999998876555555433 3
Q ss_pred cCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCC
Q 004225 89 LEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSAS 168 (767)
Q Consensus 89 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (767)
..+++|.++...++.++....+..+. .+++|+.|+++++..... +.. .....
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~--~l~~L~~L~l~~n~l~~~-~~~-----------~~~~~-------------- 127 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQ--NLPNLQYLLISNTGIKHL-PDV-----------HKIHS-------------- 127 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBC--CCTTCCEEEEEEECCSSC-CCC-----------TTCCB--------------
T ss_pred hcchhhhhhhcccCCcccccCchhhh--hccccccccccccccccC-Cch-----------hhccc--------------
Confidence 45777787777777777776655553 688888888887653111 100 00111
Q ss_pred CCcccccCCceeeeeecccccchhhccccc-cccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhh
Q 004225 169 LPYEKVENGMWVEIREAFHLEHILIRESSV-TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAK 247 (767)
Q Consensus 169 ~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~-~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 247 (767)
..+..+.+.++.++..+....... ...++.|++++. .++.++.......+|++|.+.++..++.++... +.
T Consensus 128 ------~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~-f~ 199 (350)
T 4ay9_X 128 ------LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV-FH 199 (350)
T ss_dssp ------SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTT-TT
T ss_pred ------chhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHH-hc
Confidence 123334444444555543222222 356888888764 456666666667789999999999998886543 56
Q ss_pred ccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecC
Q 004225 248 TLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDD 317 (767)
Q Consensus 248 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~ 317 (767)
++++|++|+++++. ++.++... |.+|++|.+.++.+++.++. ...+++|+.+++.+
T Consensus 200 ~l~~L~~LdLs~N~-l~~lp~~~----------~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 200 GASGPVILDISRTR-IHSLPSYG----------LENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp TEECCSEEECTTSC-CCCCCSSS----------CTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred cCcccchhhcCCCC-cCccChhh----------hccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 78999999999874 77777644 78999999999999998884 35688999988865
No 125
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.29 E-value=6.8e-11 Score=113.24 Aligned_cols=186 Identities=23% Similarity=0.188 Sum_probs=154.7
Q ss_pred hcCHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhC
Q 004225 358 LVSLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDG 437 (767)
Q Consensus 358 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 437 (767)
.+.++.+++.+.++++.++..|+..|..+.. .+.++.|++++.+++ +.++..|+++|..+.. .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~--------~ 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDED-AWVRRAAADALGQIGD--------E 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC--------G
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--------H
Confidence 3569999999999999999999999998553 356899999999888 9999999999998853 3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCc
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPF 517 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 517 (767)
+.++.|+.+|.++++.+|..|+++|+.+.. .+.++.++.++ .++++.++..++++|+++..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~------- 141 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD------- 141 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-------
Confidence 578999999999999999999999998863 23678899999 89999999999999999853
Q ss_pred cchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhc
Q 004225 518 DQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~ 595 (767)
...++.|..+++++++.++..++++|..+.. ...++.+..+++++++ .++..|..+|.++..
T Consensus 142 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~--~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTG--FARKVAVNYLETHKS 203 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCH--HHHHHHHHHHHC---
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCH--HHHHHHHHHHHhcCC
Confidence 2588999999999999999999999999853 1256778888888888 666666666665553
No 126
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.28 E-value=1.4e-10 Score=110.15 Aligned_cols=184 Identities=23% Similarity=0.258 Sum_probs=152.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCc
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPF 517 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 517 (767)
+..+.+++.|.++++.+|..|+++|+.+.. .+.++.++..+ .++++.++..++++|+.+...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~~------ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGDE------ 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCCH------
Confidence 457889999999999999999999998763 23678899999 788999999999999988632
Q ss_pred cchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccC
Q 004225 518 DQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGD 597 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~ 597 (767)
.+++.|..++.++++.++..++++|..+... ..++.++.++.++++
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~------------------- 121 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDEDW------------------- 121 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSH-------------------
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCCCH-------------------
Confidence 5789999999999999999999999987542 367888999988888
Q ss_pred CcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 004225 598 GFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCI 677 (767)
Q Consensus 598 ~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i 677 (767)
.++..|+++++.+.. ...++.|..++.+.++.+|..|+++|+.+.. ++ ++
T Consensus 122 -------~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~~---------~~ 171 (201)
T 3ltj_A 122 -------FVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---ER---------VR 171 (201)
T ss_dssp -------HHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH---------HH
T ss_pred -------HHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh---------HH
Confidence 677777777776543 2478889999999999999999999999842 33 46
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHH
Q 004225 678 KPLCDLLLYADPEIVTICLKGLENIL 703 (767)
Q Consensus 678 ~~L~~ll~~~~~~v~~~al~aL~~l~ 703 (767)
+.|..+++++++.++..|.++|.++-
T Consensus 172 ~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 172 AAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 67777888899999999999998753
No 127
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.28 E-value=1.2e-10 Score=137.50 Aligned_cols=375 Identities=11% Similarity=0.068 Sum_probs=247.4
Q ss_pred CHHHHHhhhcC--CCHHHHHHHHHHHHHhcC-C-C-h-----------HHHHhcCchHHHHhhccCCCCHHHHHHHHHHH
Q 004225 360 SLPGMLAGVWS--DDSGLQLEATTWFRKLLL-P-P-S-----------EKVIQSGVVARFVEFLTREDNPQLQLEAARAL 423 (767)
Q Consensus 360 ~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~-~-~-~-----------~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L 423 (767)
.++.++..+.+ .++.++..|+..|++... . . . ..-....+-+.+++.+.+++ +.+ ..++.++
T Consensus 36 ~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~-~~~-~~~~~~l 113 (876)
T 1qgr_A 36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET-YRP-SSASQCV 113 (876)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC-SSS-CHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCc-HHH-HHHHHHH
Confidence 45667777765 468899999999998651 1 0 0 00111223345777787777 667 8899999
Q ss_pred HHHHh-hhhHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHHhcCC-chhHHHHHhcCCHHHHHHHHccCC--ChHH
Q 004225 424 TNIAS-ENTNVVIDGGAVPIFVKLLSSP--SDDVREKAVWALGNIARSS-PRDRDLVLSEKALIPLLAQLNKHA--KPSM 497 (767)
Q Consensus 424 ~~l~~-~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~--~~~~ 497 (767)
..++. +... -.-..+++.++..+.++ ++.++..++.+++.++... ++.... .-...++.+.+.+ .++ +..+
T Consensus 114 ~~i~~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l-~~~~~~~~v 190 (876)
T 1qgr_A 114 AGIACAEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGM-RKEEPSNNV 190 (876)
T ss_dssp HHHHHHHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHH-STTCSCHHH
T ss_pred HHHHHhhCcc-cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhh-cCCCCCHHH
Confidence 99987 3220 01246789999999888 9999999999999998542 111000 0122556677777 444 6899
Q ss_pred HHHHHHHHHhhcCCCC-C-CCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcC
Q 004225 498 LRNATKTLSRFCQGKP-E-PPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLH 575 (767)
Q Consensus 498 ~~~~~~~L~~l~~~~~-~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 575 (767)
+..++.++.+++..-. . ........+++.+...+.+.+.+++..++.++..++...+......+...+++.+...+.+
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (876)
T 1qgr_A 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (876)
T ss_dssp HHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999875421 1 0111112467888888888899999999999999986655443333434678888888887
Q ss_pred CCCCCcccchHHHHHhhhhccCC-----------------c-cee---------------------------ehhhhHHH
Q 004225 576 PLPFPFGLTPPLWTVRYIVKGDG-----------------F-LTQ---------------------------CTGIAKEA 610 (767)
Q Consensus 576 ~~~~~~v~~~a~~~L~~l~~~~~-----------------~-~~~---------------------------~l~v~~~a 610 (767)
.+. .++..|+..+..++.... . ... .-.++..|
T Consensus 271 ~~~--~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a 348 (876)
T 1qgr_A 271 DID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (876)
T ss_dssp SSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHH
T ss_pred Cch--HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHH
Confidence 777 888888888777764310 0 000 00344455
Q ss_pred HHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHH
Q 004225 611 CRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPE 690 (767)
Q Consensus 611 ~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 690 (767)
..+++.++....+ .++. .+++.+...+.+.++.+|..|+++++.++.+..++...... ..+++.++..+.++++.
T Consensus 349 ~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~ 423 (876)
T 1qgr_A 349 GVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV 423 (876)
T ss_dssp HHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHCcH---hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHH
Confidence 5555554432111 1111 34566667777888999999999999999876545443323 34788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 691 IVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 691 v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
+|..|+|++.+++........ ..++.. ..++.+...+.++ +.|+..|.+++..+..
T Consensus 424 vr~~a~~~l~~~~~~~~~~~~-------~~~~l~-----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 424 VRDTAAWTVGRICELLPEAAI-------NDVYLA-----PLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHHHHHCGGGTS-------STTTHH-----HHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhcc-------cHHHHH-----HHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 999999999999986433110 111222 2356666666664 8899999888887653
No 128
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.28 E-value=9.3e-11 Score=111.31 Aligned_cols=184 Identities=24% Similarity=0.239 Sum_probs=140.8
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVL 477 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 477 (767)
+..+.+++.+.+++ +.++..|+++|..+.. .+.++.|++++.++++.++..|+++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 74 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 45678888888888 8888888888887642 2567888888888888888888888887752
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHH
Q 004225 478 SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKI 557 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 557 (767)
..+++.++..+ .++++.++..++++|+++... .+++.+..++.++++.++..+++++..+..
T Consensus 75 -~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 136 (201)
T 3ltj_A 75 -ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 136 (201)
T ss_dssp -GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC------
T ss_pred -HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------
Confidence 13567788888 778888888888888887532 477888888888888888888888888753
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHH
Q 004225 558 QAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPL 637 (767)
Q Consensus 558 ~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L 637 (767)
...++.+..++.+++. .++..|+++++.+.. + ..++.|
T Consensus 137 -----~~~~~~L~~~l~d~~~--------------------------~vr~~A~~aL~~~~~--~---------~~~~~L 174 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDG--------------------------WVRQSAADALGEIGG--E---------RVRAAM 174 (201)
T ss_dssp -----GGGHHHHHHHTTCSSH--------------------------HHHHHHHHHHHHHCS--H---------HHHHHH
T ss_pred -----HHHHHHHHHHHcCCCH--------------------------HHHHHHHHHHHHhCc--h---------hHHHHH
Confidence 2466778888888777 666666666666522 1 256677
Q ss_pred HHHHhcCCchhHHHHHHHHHHhh
Q 004225 638 VDLLQNAEFFTKKEAARAISNAI 660 (767)
Q Consensus 638 ~~ll~~~~~~v~~~a~~~L~nl~ 660 (767)
..+++++++.||..|..+|.++.
T Consensus 175 ~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 175 EKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHH
Confidence 88888888889999888888764
No 129
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.27 E-value=3.6e-11 Score=117.68 Aligned_cols=61 Identities=11% Similarity=0.216 Sum_probs=38.5
Q ss_pred CCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCc
Q 004225 64 FPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAK 129 (767)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 129 (767)
.++|++|++.++ +++.++... ...+++|++|+++++..++...+..+ ..+++|++|++++|
T Consensus 30 ~~~l~~L~l~~n-~l~~i~~~~--~~~l~~L~~L~l~~n~~l~~i~~~~f--~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 30 PPSTQTLKLIET-HLRTIPSHA--FSNLPNISRIYVSIDVTLQQLESHSF--YNLSKVTHIEIRNT 90 (239)
T ss_dssp CTTCCEEEEESC-CCSEECTTT--TTTCTTCCEEEEECCSSCCEECTTTE--ESCTTCCEEEEEEE
T ss_pred CCcccEEEEeCC-cceEECHHH--ccCCCCCcEEeCCCCCCcceeCHhHc--CCCcCCcEEECCCC
Confidence 347788887775 355555433 34577888888887765555443334 25677777777763
No 130
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.27 E-value=2.3e-10 Score=129.88 Aligned_cols=84 Identities=14% Similarity=0.092 Sum_probs=51.2
Q ss_pred ccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCccccccc
Q 004225 248 TLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEG 327 (767)
Q Consensus 248 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~ 327 (767)
.+++|+.|+++++.....+...... .+++|+.|+++++ +++.++.. ....+++|++|+++++ +++.++..
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~-------~l~~L~~L~Ls~N-~L~~l~~~-~f~~l~~L~~L~Ls~N-~l~~l~~~ 536 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFT-------ELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHN-NFFSLDTF 536 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCT-------TCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTS-CCCBCCCG
T ss_pred cchhhhhhhhhhcccccccCchhhh-------hccccCEEECCCC-ccCCcChH-HHcCCCCCCEEECCCC-cCCCCChh
Confidence 4556666666665544433322211 2678888888877 56666532 2346788888888887 56655543
Q ss_pred C-CCCcccchhhccc
Q 004225 328 K-LSTPKLHKVERHG 341 (767)
Q Consensus 328 ~-~~~~~L~~l~i~~ 341 (767)
. ...++|+.+++++
T Consensus 537 ~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 537 PYKCLNSLQVLDYSL 551 (635)
T ss_dssp GGTTCTTCCEEECTT
T ss_pred HHhCCCCCCEEECCC
Confidence 2 2345677777765
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.26 E-value=7e-12 Score=129.98 Aligned_cols=207 Identities=13% Similarity=0.111 Sum_probs=114.5
Q ss_pred CCCCccceeeccccccccc--ccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCC
Q 004225 62 VMFPQLQYLKMSDLEKFTS--FCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLG 139 (767)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 139 (767)
..+++|++|++++|. +.. ++.. ...+++|++|++++|. +....+..+ ..+++|++|++++|..+++
T Consensus 90 ~~~~~L~~L~L~~~~-l~~~~~~~~---~~~~~~L~~L~L~~~~-l~~~~~~~l--~~~~~L~~L~L~~~~~l~~----- 157 (336)
T 2ast_B 90 FSPFRVQHMDLSNSV-IEVSTLHGI---LSQCSKLQNLSLEGLR-LSDPIVNTL--AKNSNLVRLNLSGCSGFSE----- 157 (336)
T ss_dssp CCCBCCCEEECTTCE-ECHHHHHHH---HTTBCCCSEEECTTCB-CCHHHHHHH--TTCTTCSEEECTTCBSCCH-----
T ss_pred ccCCCCCEEEccCCC-cCHHHHHHH---HhhCCCCCEEeCcCcc-cCHHHHHHH--hcCCCCCEEECCCCCCCCH-----
Confidence 345666666666654 322 2211 2345666666666663 222222222 1356666666666532221
Q ss_pred CcchhcchhhHhhhccccceeeecCC-CCCC---C--ccccc-CCceeeeeecc-cccch-hhccccccccccEEEecCC
Q 004225 140 DERTILSLGDFLQRLHTMKVLQIGGY-SASL---P--YEKVE-NGMWVEIREAF-HLEHI-LIRESSVTNNLVILRVKGC 210 (767)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~---~--~~~~~-~l~~l~i~~~~-~l~~~-~~~~~~~~~~L~~L~i~~~ 210 (767)
..+...+.++++|+.|.+++| .... + ...++ +|+.|.+.+|. .+..- .......+++|++|++++|
T Consensus 158 -----~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 158 -----FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp -----HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred -----HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 112233555666666666666 2211 0 22345 66667776664 34311 1122345789999999998
Q ss_pred Cccc-cccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccc-cccceEe
Q 004225 211 DHLV-NLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITF-RELKELK 288 (767)
Q Consensus 211 ~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~ 288 (767)
..+. ..+.....+++|++|++++|..+.+..... +.++++|++|++.+| +..-.... + .+|+.|+
T Consensus 233 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~--i~~~~~~~----------l~~~l~~L~ 299 (336)
T 2ast_B 233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI--VPDGTLQL----------LKEALPHLQ 299 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS--SCTTCHHH----------HHHHSTTSE
T ss_pred CcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc--cCHHHHHH----------HHhhCcceE
Confidence 8543 334456778999999999998655443222 456999999999998 22211110 2 3467777
Q ss_pred ecCCCCccccc
Q 004225 289 LVDLERLTSFC 299 (767)
Q Consensus 289 l~~~~~l~~~~ 299 (767)
++ +.+++...
T Consensus 300 l~-~n~l~~~~ 309 (336)
T 2ast_B 300 IN-CSHFTTIA 309 (336)
T ss_dssp ES-CCCSCCTT
T ss_pred Ee-cccCcccc
Confidence 75 55566554
No 132
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.25 E-value=1.2e-10 Score=118.77 Aligned_cols=228 Identities=13% Similarity=0.083 Sum_probs=146.6
Q ss_pred CCccceeecccccccccccCCCCcccCCCCccEEEeccCCccccc-ccccccccccCCCceeeeCCcccccccccCCCcc
Q 004225 64 FPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVR-TTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDER 142 (767)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 142 (767)
+++|++|+++++. ++.++... ...+++|++|+++++..-... .+..+ ..+++|++|++++|....
T Consensus 27 ~~~l~~L~L~~n~-l~~i~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~--------- 92 (306)
T 2z66_A 27 PSSATRLELESNK-LQSLPHGV--FDKLTQLTKLSLSSNGLSFKGCCSQSD--FGTTSLKYLDLSFNGVIT--------- 92 (306)
T ss_dssp CTTCCEEECCSSC-CCCCCTTT--TTTCTTCSEEECCSSCCCEEEEEEHHH--HSCSCCCEEECCSCSEEE---------
T ss_pred CCCCCEEECCCCc-cCccCHhH--hhccccCCEEECCCCccCcccCccccc--ccccccCEEECCCCcccc---------
Confidence 4689999998864 56666443 346889999999887532110 01111 257889999998875321
Q ss_pred hhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhh-ccccccccccEEEecCCCccccccCCCC
Q 004225 143 TILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILI-RESSVTNNLVILRVKGCDHLVNLVPPST 221 (767)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~ 221 (767)
+...+..+++|+.|.++++. ++.+.. .....+++|++|+++++...........
T Consensus 93 ----l~~~~~~l~~L~~L~l~~n~---------------------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 147 (306)
T 2z66_A 93 ----MSSNFLGLEQLEHLDFQHSN---------------------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147 (306)
T ss_dssp ----EEEEEETCTTCCEEECTTSE---------------------EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT
T ss_pred ----ChhhcCCCCCCCEEECCCCc---------------------ccccccchhhhhccCCCEEECCCCcCCccchhhcc
Confidence 11124456677777776653 222211 2234568999999998765443333466
Q ss_pred cCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcc-ccccccccccccccccceEeecCCCCcccccC
Q 004225 222 SFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQ-GDDVVAKDEVITFRELKELKLVDLERLTSFCS 300 (767)
Q Consensus 222 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 300 (767)
.+++|++|+++++.......+.. +..+++|++|++++|. ++.++. .... +++|+.|+++++. ++.++.
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~--------l~~L~~L~L~~N~-l~~~~~ 216 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNS--------LSSLQVLNMSHNN-FFSLDT 216 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTT--------CTTCCEEECTTSC-CSBCCS
T ss_pred cCcCCCEEECCCCccccccchhH-HhhCcCCCEEECCCCC-cCCcCHHHhcC--------CCCCCEEECCCCc-cCccCh
Confidence 78999999999986544333333 4678999999999986 554433 2222 7999999999874 555543
Q ss_pred CCccccCCccceEeecCCCCcccccccCCCC-cccchhhcccc
Q 004225 301 GNCAFKFPSLERLVVDDCPDMKIFSEGKLST-PKLHKVERHGE 342 (767)
Q Consensus 301 ~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~-~~L~~l~i~~~ 342 (767)
. ....+++|++|++++|.-....|...... ++|+.+++++.
T Consensus 217 ~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 217 F-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp G-GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred h-hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 2 23468999999999995333334333333 37889988873
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.25 E-value=3.9e-13 Score=146.27 Aligned_cols=307 Identities=18% Similarity=0.179 Sum_probs=181.1
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
.++|++|+++++. +........+..+++|++|++++|. +... +...++..+..+++|++|+++++. +.+....
T Consensus 2 ~~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~ 74 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEA----RCKDISSALRVNPALAELNLRSNE-LGDVGVH 74 (461)
T ss_dssp CEEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHH----HHHHHHHHHHTCTTCCEEECTTCC-CHHHHHH
T ss_pred Cccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHH----HHHHHHHHHHhCCCcCEEeCCCCc-CChHHHH
Confidence 4679999998875 5544333345789999999999986 4321 112334455668999999999864 4331110
Q ss_pred CCcccCCC----CccEEEeccCCcccc---cccccccccccCCCceeeeCCcccccccccCCCcchhcchhhH-hhhccc
Q 004225 85 DLDILEFP----SLKELRISKCPEFMV---RTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDF-LQRLHT 156 (767)
Q Consensus 85 ~~~~~~~~----~L~~L~l~~c~~l~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 156 (767)
.+ ...++ +|++|++++|..-.. ..+..+ ..+++|++|++++|..... ....+... ....++
T Consensus 75 ~l-~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~--------~~~~l~~~l~~~~~~ 143 (461)
T 1z7x_W 75 CV-LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL--RTLPTLQELHLSDNLLGDA--------GLQLLCEGLLDPQCR 143 (461)
T ss_dssp HH-HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT--TSCTTCCEEECCSSBCHHH--------HHHHHHHHHTSTTCC
T ss_pred HH-HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH--ccCCceeEEECCCCcCchH--------HHHHHHHHHhcCCCc
Confidence 00 11233 799999999963321 112223 3689999999998863211 01111111 223457
Q ss_pred cceeeecCCCCCCC--------cccccCCceeeeeecccccchhhccc-----cccccccEEEecCCCcccc----ccCC
Q 004225 157 MKVLQIGGYSASLP--------YEKVENGMWVEIREAFHLEHILIRES-----SVTNNLVILRVKGCDHLVN----LVPP 219 (767)
Q Consensus 157 L~~L~l~~~~~~~~--------~~~~~~l~~l~i~~~~~l~~~~~~~~-----~~~~~L~~L~i~~~~~~~~----~~~~ 219 (767)
|+.|.++++..... +..++.++.|.++++. +........ ...++|++|++++|..-.. ++..
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 99999999864321 1235788999998876 443322211 1246899999998753321 2222
Q ss_pred CCcCCCCCEEEeccCccchhhcC----chhhhccccCcEEeEccccccch-----hccccccccccccccccccceEeec
Q 004225 220 STSFQNLTNMVVSRCNNLKIVLT----SLIAKTLVRLRYMKIKSCDRITE-----IVQGDDVVAKDEVITFRELKELKLV 290 (767)
Q Consensus 220 ~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~l~~L~~L~i~~c~~l~~-----~~~~~~~~~~~~~~~~~~L~~L~l~ 290 (767)
...+++|++|++++|. +++... ..+...+++|++|++++|. +.. ++..... +++|++|+++
T Consensus 223 l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~--------~~~L~~L~Ls 292 (461)
T 1z7x_W 223 VASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRA--------KESLKELSLA 292 (461)
T ss_dssp HHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHH--------CTTCCEEECT
T ss_pred HHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhh--------CCCcceEECC
Confidence 3467899999999984 444321 1222357899999999884 444 3322222 6788888888
Q ss_pred CCCCcccccCC----CccccCCccceEeecCCCCccc-----ccccCCCCcccchhhcccc
Q 004225 291 DLERLTSFCSG----NCAFKFPSLERLVVDDCPDMKI-----FSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 291 ~~~~l~~~~~~----~~~~~~~~L~~L~i~~c~~l~~-----~~~~~~~~~~L~~l~i~~~ 342 (767)
++. ++..... ......++|++|++.+|. ++. ++......++|+.+++++.
T Consensus 293 ~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 293 GNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp TCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC
Confidence 763 3322110 001123678888888774 331 2222222356677776653
No 134
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.24 E-value=2.3e-11 Score=132.31 Aligned_cols=315 Identities=13% Similarity=0.064 Sum_probs=214.0
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccCC--CCHHHHHHHHHHHHHHHhhh-h---HH
Q 004225 362 PGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTRE--DNPQLQLEAARALTNIASEN-T---NV 433 (767)
Q Consensus 362 ~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~~~-~---~~ 433 (767)
..+++.+.++++.+ ..++..+..++ ..+.. .-.++++.|++.+.++ + +.++..|+.+|..++.+. . ..
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhhHh
Confidence 34677788888888 88888888887 11110 1146789999999888 6 899999999999998721 1 11
Q ss_pred HHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHHhcCCchhHH-HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcC
Q 004225 434 VIDGGAVPIFVKLLSSP--SDDVREKAVWALGNIARSSPRDRD-LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 434 ~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 510 (767)
.. ..+++.++..+.++ ++.+|..|+++++++......... .....-+++.+...+ .+++.+++..+++++..++.
T Consensus 169 ~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 169 KS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp GH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHH
Confidence 11 23678888899887 799999999999997643221100 000111345555566 77889999999999999987
Q ss_pred CCCCCCccchh-chHHHHHHHhcCCCHHHHHHHHHHHHhhccCChh---------------------HHHHHHhcCcHHH
Q 004225 511 GKPEPPFDQVR-PALPALAQLVHSNDNDVLRYACEALSCLSDGTND---------------------KIQAVIEADVCPR 568 (767)
Q Consensus 511 ~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---------------------~~~~~~~~~~~~~ 568 (767)
..+..-..... .+++.++..+++.+++++..+++.+..++..... ..+... ..++|.
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~ 325 (462)
T 1ibr_B 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPI 325 (462)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHH
Confidence 65322222344 7888888888999999999999999888754210 111011 235666
Q ss_pred HHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchh
Q 004225 569 LVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFT 648 (767)
Q Consensus 569 L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 648 (767)
+++.+...+. +. .++ .-.++..|+.+++.++....+ .++ ..+++.+...+.+.++.+
T Consensus 326 l~~~l~~~d~--d~--------------~~~---~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 326 LTQTLTKQDE--ND--------------DDD---DWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp HHHHTTCCCS--SC--------------CTT---CCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHhccc--cc--------------ccc---cchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHH
Confidence 6666655432 10 000 004667777777776652221 111 136677888888899999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 004225 649 KKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 649 ~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 707 (767)
|..|+.+++.++.+..++.....+ ..+++.++..+.++++.+|..|+|+|.+++....
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999864433221111 4678899999999999999999999999998654
No 135
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=5.7e-11 Score=129.04 Aligned_cols=106 Identities=10% Similarity=-0.007 Sum_probs=51.6
Q ss_pred ccccccEEEecCCCccccccCCCC-cCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccccc
Q 004225 198 VTNNLVILRVKGCDHLVNLVPPST-SFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKD 276 (767)
Q Consensus 198 ~~~~L~~L~i~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 276 (767)
.+++|++|+++++......+.... .+++|++|++++|. ++.++.. ..+++|++|+++++. +..++.....
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~---- 212 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ---VVFAKLKTLDLSSNK-LAFMGPEFQS---- 212 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC---CCCTTCCEEECCSSC-CCEECGGGGG----
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc---ccCCCCCEEECCCCC-CCCCCHhHcC----
Confidence 345666666655433222222222 45666666666654 3333222 135666666666554 4444333222
Q ss_pred ccccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 277 EVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 277 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
+++|+.|+++++ .++.++.. ...+++|+.|++.+++
T Consensus 213 ----l~~L~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 213 ----AAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ----GTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCC
T ss_pred ----CCCccEEEecCC-cCcccchh--hccCCCCCEEEcCCCC
Confidence 556666666653 34444432 2345566666666554
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.22 E-value=2e-10 Score=119.41 Aligned_cols=229 Identities=16% Similarity=0.153 Sum_probs=139.8
Q ss_pred CCCCC-CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccc
Q 004225 1 MSCGI-QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFT 79 (767)
Q Consensus 1 ~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 79 (767)
+|..+ +++++|+|+++ .++.+ +.+.+.++++|++|+++++.-++.+ .. .....+++|.++.+.++.+++
T Consensus 24 iP~~l~~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i-~~-------~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 24 IPSDLPRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVI-EA-------DVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp CCTTCCTTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEE-CT-------TSBCSCTTCCEEEEEEETTCC
T ss_pred cCcCcCCCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCcc-Ch-------hHhhcchhhhhhhcccCCccc
Confidence 35544 57999999997 47888 4445578999999999999754544 11 233457788887777778888
Q ss_pred cccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhc-cccc
Q 004225 80 SFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRL-HTMK 158 (767)
Q Consensus 80 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~ 158 (767)
.++... ...+++|+.|+++++.. .......+ ....++..|++.++..+..++. ..+..+ ..++
T Consensus 94 ~l~~~~--f~~l~~L~~L~l~~n~l-~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~-----------~~f~~~~~~l~ 157 (350)
T 4ay9_X 94 YINPEA--FQNLPNLQYLLISNTGI-KHLPDVHK--IHSLQKVLLDIQDNINIHTIER-----------NSFVGLSFESV 157 (350)
T ss_dssp EECTTS--BCCCTTCCEEEEEEECC-SSCCCCTT--CCBSSCEEEEEESCTTCCEECT-----------TSSTTSBSSCE
T ss_pred ccCchh--hhhcccccccccccccc-ccCCchhh--cccchhhhhhhccccccccccc-----------cchhhcchhhh
Confidence 886554 45789999999998753 22221112 2456677788876654443221 011222 2455
Q ss_pred eeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccc
Q 004225 159 VLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNL 237 (767)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l 237 (767)
.|.+++.. ++.+. .......+|++|.+.+++.++.++.. ...+++|+.|+++++ .+
T Consensus 158 ~L~L~~N~---------------------i~~i~-~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l 214 (350)
T 4ay9_X 158 ILWLNKNG---------------------IQEIH-NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RI 214 (350)
T ss_dssp EEECCSSC---------------------CCEEC-TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CC
T ss_pred hhcccccc---------------------ccCCC-hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-Cc
Confidence 56655543 33321 11223356777777766666665543 356677777777765 45
Q ss_pred hhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecC
Q 004225 238 KIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVD 291 (767)
Q Consensus 238 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 291 (767)
+.++.. .+.+|+.|.+.++..++.+|. ... |++|+.+++.+
T Consensus 215 ~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l~~--------l~~L~~l~l~~ 255 (350)
T 4ay9_X 215 HSLPSY----GLENLKKLRARSTYNLKKLPT-LEK--------LVALMEASLTY 255 (350)
T ss_dssp CCCCSS----SCTTCCEEECTTCTTCCCCCC-TTT--------CCSCCEEECSC
T ss_pred CccChh----hhccchHhhhccCCCcCcCCC-chh--------CcChhhCcCCC
Confidence 555432 255677777777776666653 222 66777666654
No 137
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.22 E-value=7.6e-10 Score=135.31 Aligned_cols=386 Identities=13% Similarity=0.111 Sum_probs=250.4
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc-CC--ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHh
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL-LP--PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVID 436 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 436 (767)
.++.+++.+.++|++++..|...|.+.. .. ....-....+++.+++.+.+++ +.+|..|+.+|..++........
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~~~- 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV- 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHHHH-
Confidence 4788899999999999999999998876 21 1111112245788888898777 99999999999999871111111
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchh------HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcC
Q 004225 437 GGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRD------RDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ 510 (767)
Q Consensus 437 ~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 510 (767)
..+++.++..+.++++.+|..|+.+++.++...... .. -.....++.++..+.++++..++..++.++..++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~-~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA-NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH-HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH-HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 135678888888888899999999999998543321 11 11234678888888335889999999999999986
Q ss_pred CCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHH
Q 004225 511 GKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 511 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L 590 (767)
..+..-.......++.+...+.+++..++..++.++..++...++.. . ..+++.++..+.+.+. ..++..++.++
T Consensus 164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~-~~~l~~l~~~L~~~~~-~~~r~~a~~~l 238 (1230)
T 1u6g_C 164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---F-VDLIEHLLSELSKNDS-MSTTRTYIQCI 238 (1230)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCS-SCSCTTHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---H-HHHHHHHHHHhccCCc-hhHHHHHHHHH
Confidence 43222222457788889999999999999999999999997654322 1 2467788877766532 26888899999
Q ss_pred hhhhccCCcc-eeeh----------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh-----------
Q 004225 591 RYIVKGDGFL-TQCT----------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ----------- 642 (767)
Q Consensus 591 ~~l~~~~~~~-~~~l----------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~----------- 642 (767)
+.++...+.. ..++ ++|..++.+++.++....+.....+. .+++.+++.+.
T Consensus 239 ~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~ 317 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDED 317 (1230)
T ss_dssp HHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC---------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccc
Confidence 8887543211 1111 67777888877776532211111110 12222222221
Q ss_pred --------------------------cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHH
Q 004225 643 --------------------------NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICL 696 (767)
Q Consensus 643 --------------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al 696 (767)
...+++|..|+.++..++... ++.....+ ..+++.+...+.+.++.++..++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~-~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~ 395 (1230)
T 1u6g_C 318 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR-HEMLPEFY-KTVSPALISRFKEREENVKADVF 395 (1230)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHTTC-CTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHH
T ss_pred cccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc-hhHHHHHH-HHHHHHHHHHcCCCchHHHHHHH
Confidence 112467999999999988742 22222222 45788888888888999999999
Q ss_pred HHHHHHHHhhhhhhc-cCCc-------cccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 697 KGLENILKVGEAEMN-TGTA-------NRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 697 ~aL~~l~~~~~~~~~-~~~~-------~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
.++..++........ .... + ........ -...++.+.+.+.++++.++..+..++..+..
T Consensus 396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 396 HAYLSLLKQTRPVQSWLCDPDAMEQGET-PLTMLQSQ--VPNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHHHHCCC------------CCC-HHHHHHHH--TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccCccccccccc-hHHHHHHH--hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 999988864321000 0000 0 00000111 12235666666888999999888888877643
No 138
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.18 E-value=3.5e-10 Score=113.33 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=27.4
Q ss_pred CCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 62 VMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
..+++|++|+++++ .++.++... ...+++|++|+++++.. ....+..+ ..+++|++|++.++.
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~l-~~~~~~~~--~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 49 FSFPELQVLDLSRC-EIQTIEDGA--YQSLSHLSTLILTGNPI-QSLALGAF--SGLSSLQKLVAVETN 111 (276)
T ss_dssp TTCTTCSEEECTTC-CCCEECTTT--TTTCTTCCEEECTTCCC-CEECTTTT--TTCTTCCEEECTTSC
T ss_pred ccccCCcEEECCCC-cCCccCHHH--ccCCcCCCEEECCCCcc-CccChhhh--cCCccccEEECCCCC
Confidence 34555555555554 233333222 23445555555555432 11111112 244555555555443
No 139
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.18 E-value=2.2e-10 Score=114.35 Aligned_cols=178 Identities=15% Similarity=0.229 Sum_probs=96.0
Q ss_pred cCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCccccc
Q 004225 29 SSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVR 108 (767)
Q Consensus 29 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 108 (767)
..+++|++|++.++. +..+ +.+..+++|++|+++++. ++.++. ...+++|++|++++|. ++..
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~----------~~l~~l~~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~L~~n~-l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSV----------QGIQYLPNVRYLALGGNK-LHDISA----LKELTNLTYLILTGNQ-LQSL 100 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCC----------TTGGGCTTCCEEECTTSC-CCCCGG----GTTCTTCCEEECTTSC-CCCC
T ss_pred ccccceeeeeeCCCC-cccc----------cccccCCCCcEEECCCCC-CCCchh----hcCCCCCCEEECCCCc-cCcc
Confidence 356666666666653 3333 234446677777776653 433331 3456677777777663 3332
Q ss_pred ccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccc
Q 004225 109 TTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHL 188 (767)
Q Consensus 109 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l 188 (767)
.+..+ ..+++|++|++++|..... + ...+..+++|+.|.++++..
T Consensus 101 ~~~~~--~~l~~L~~L~L~~n~l~~~-~-----------~~~~~~l~~L~~L~L~~n~l--------------------- 145 (272)
T 3rfs_A 101 PNGVF--DKLTNLKELVLVENQLQSL-P-----------DGVFDKLTNLTYLNLAHNQL--------------------- 145 (272)
T ss_dssp CTTTT--TTCTTCCEEECTTSCCCCC-C-----------TTTTTTCTTCCEEECCSSCC---------------------
T ss_pred ChhHh--cCCcCCCEEECCCCcCCcc-C-----------HHHhccCCCCCEEECCCCcc---------------------
Confidence 22222 2566777777776653211 0 01234555666666665531
Q ss_pred cchhhccccccccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEcccc
Q 004225 189 EHILIRESSVTNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCD 261 (767)
Q Consensus 189 ~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 261 (767)
+.+.......+++|++|+++++. +..+.+. +..+++|++|++++|. ++.+++. .+..+++|++|++.+++
T Consensus 146 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 146 QSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDG-VFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred CccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCHH-HHhCCcCCCEEEccCCC
Confidence 11111112335677777777764 3333332 3567788888887764 4444332 23567788888887765
No 140
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.18 E-value=1.3e-10 Score=116.03 Aligned_cols=201 Identities=14% Similarity=0.133 Sum_probs=120.2
Q ss_pred CCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcc
Q 004225 63 MFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDER 142 (767)
Q Consensus 63 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 142 (767)
.+++|++|++.++. ++.++. ...+++|++|++++|.. ... + .+ ..+++|++|++++|..... +
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~----l~~l~~L~~L~l~~n~l-~~~-~-~l--~~l~~L~~L~L~~n~l~~~-~------ 101 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQG----IQYLPNVRYLALGGNKL-HDI-S-AL--KELTNLTYLILTGNQLQSL-P------ 101 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTT----GGGCTTCCEEECTTSCC-CCC-G-GG--TTCTTCCEEECTTSCCCCC-C------
T ss_pred cccceeeeeeCCCC-cccccc----cccCCCCcEEECCCCCC-CCc-h-hh--cCCCCCCEEECCCCccCcc-C------
Confidence 47899999998864 555543 45789999999999863 322 1 12 3789999999998863211 1
Q ss_pred hhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCC-CC
Q 004225 143 TILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPP-ST 221 (767)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~ 221 (767)
...+.++++|+.|.++++. ++.+.......+++|++|+++++. +..+.+. ..
T Consensus 102 -----~~~~~~l~~L~~L~L~~n~---------------------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 154 (272)
T 3rfs_A 102 -----NGVFDKLTNLKELVLVENQ---------------------LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFD 154 (272)
T ss_dssp -----TTTTTTCTTCCEEECTTSC---------------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred -----hhHhcCCcCCCEEECCCCc---------------------CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhc
Confidence 1124456667777666654 222211123345778888887764 3343333 35
Q ss_pred cCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCC
Q 004225 222 SFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSG 301 (767)
Q Consensus 222 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 301 (767)
.+++|++|++++|. ++.+++.. +..+++|++|++++|. +..++..... .+++|+.|++++++-.
T Consensus 155 ~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~l~~N~~~------ 218 (272)
T 3rfs_A 155 KLTNLTELDLSYNQ-LQSLPEGV-FDKLTQLKDLRLYQNQ-LKSVPDGVFD-------RLTSLQYIWLHDNPWD------ 218 (272)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTT-------TCTTCCEEECCSSCBC------
T ss_pred cCccCCEEECCCCC-cCccCHHH-hcCCccCCEEECCCCc-CCccCHHHHh-------CCcCCCEEEccCCCcc------
Confidence 67788888887774 44443332 3567788888887765 4444433211 1677777777766321
Q ss_pred CccccCCccceEeecCCCCcccccc
Q 004225 302 NCAFKFPSLERLVVDDCPDMKIFSE 326 (767)
Q Consensus 302 ~~~~~~~~L~~L~i~~c~~l~~~~~ 326 (767)
..+|+|+++.++.+.--..+|.
T Consensus 219 ---~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 219 ---CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp ---CCTTTTHHHHHHHHHTGGGBBC
T ss_pred ---ccCcHHHHHHHHHHhCCCcccC
Confidence 1356666666665533334443
No 141
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.16 E-value=2.8e-10 Score=115.77 Aligned_cols=80 Identities=13% Similarity=0.289 Sum_probs=38.0
Q ss_pred CcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccc
Q 004225 30 SFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRT 109 (767)
Q Consensus 30 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 109 (767)
.+++|++|++.++. +..+ +.+..+++|++|+++++ .+++++. ...+++|++|++++|. +...
T Consensus 39 ~l~~L~~L~l~~~~-i~~l----------~~~~~l~~L~~L~L~~n-~i~~~~~----~~~l~~L~~L~L~~n~-l~~~- 100 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTI----------EGVQYLNNLIGLELKDN-QITDLAP----LKNLTKITELELSGNP-LKNV- 100 (308)
T ss_dssp HHHTCCEEECTTSC-CCCC----------TTGGGCTTCCEEECCSS-CCCCCGG----GTTCCSCCEEECCSCC-CSCC-
T ss_pred HcCCcCEEEeeCCC-ccCc----------hhhhccCCCCEEEccCC-cCCCChh----HccCCCCCEEEccCCc-CCCc-
Confidence 45556666665553 3332 22334556666666554 2333332 2345566666665554 2221
Q ss_pred cccccccccCCCceeeeCCcc
Q 004225 110 TSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 110 ~~~~~~~~l~~L~~L~l~~~~ 130 (767)
+. + ..+++|++|++++|.
T Consensus 101 ~~-~--~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 101 SA-I--AGLQSIKTLDLTSTQ 118 (308)
T ss_dssp GG-G--TTCTTCCEEECTTSC
T ss_pred hh-h--cCCCCCCEEECCCCC
Confidence 11 1 245555555555543
No 142
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.14 E-value=4.8e-10 Score=114.04 Aligned_cols=190 Identities=16% Similarity=0.214 Sum_probs=128.5
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|++.+|. +..++. +..+++|++|++++|. +..+ ..+..+++|++|+++++. ++.++.
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~~---~~~l~~L~~L~L~~n~-i~~~----------~~~~~l~~L~~L~L~~n~-l~~~~~ 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIEG---VQYLNNLIGLELKDNQ-ITDL----------APLKNLTKITELELSGNP-LKNVSA 102 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCTT---GGGCTTCCEEECCSSC-CCCC----------GGGTTCCSCCEEECCSCC-CSCCGG
T ss_pred HcCCcCEEEeeCCC-ccCchh---hhccCCCCEEEccCCc-CCCC----------hhHccCCCCCEEEccCCc-CCCchh
Confidence 36789999999984 565532 4679999999999884 5544 226778999999999975 666542
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeec
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIG 163 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (767)
...+++|++|++++|.. .... . + ..+++|++|++++|..... + .+..+++|+.|.++
T Consensus 103 ----~~~l~~L~~L~l~~n~l-~~~~-~-l--~~l~~L~~L~l~~n~l~~~-~-------------~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 103 ----IAGLQSIKTLDLTSTQI-TDVT-P-L--AGLSNLQVLYLDLNQITNI-S-------------PLAGLTNLQYLSIG 159 (308)
T ss_dssp ----GTTCTTCCEEECTTSCC-CCCG-G-G--TTCTTCCEEECCSSCCCCC-G-------------GGGGCTTCCEEECC
T ss_pred ----hcCCCCCCEEECCCCCC-CCch-h-h--cCCCCCCEEECCCCccCcC-c-------------cccCCCCccEEEcc
Confidence 46789999999999863 3321 1 2 4789999999998863211 0 14566677777776
Q ss_pred CCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCc
Q 004225 164 GYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTS 243 (767)
Q Consensus 164 ~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 243 (767)
++. +..+ .....+++|++|+++++. +..+. ....+++|++|++++|. ++..++
T Consensus 160 ~n~---------------------l~~~--~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~N~-l~~~~~- 212 (308)
T 1h6u_A 160 NAQ---------------------VSDL--TPLANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQ-ISDVSP- 212 (308)
T ss_dssp SSC---------------------CCCC--GGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECTTSC-CCBCGG-
T ss_pred CCc---------------------CCCC--hhhcCCCCCCEEECCCCc-cCcCh-hhcCCCCCCEEEccCCc-cCcccc-
Confidence 654 2221 113345778888887754 33332 25667888888888774 344432
Q ss_pred hhhhccccCcEEeEcccc
Q 004225 244 LIAKTLVRLRYMKIKSCD 261 (767)
Q Consensus 244 ~~~~~l~~L~~L~i~~c~ 261 (767)
+..+++|++|++++++
T Consensus 213 --l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 213 --LANTSNLFIVTLTNQT 228 (308)
T ss_dssp --GTTCTTCCEEEEEEEE
T ss_pred --ccCCCCCCEEEccCCe
Confidence 3567888888887766
No 143
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=7.2e-10 Score=111.01 Aligned_cols=202 Identities=16% Similarity=0.146 Sum_probs=121.2
Q ss_pred CccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchh
Q 004225 65 PQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTI 144 (767)
Q Consensus 65 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 144 (767)
++|++|+++++ +++.++... ...+++|++|++++|. +....+..+ ..+++|++|+++++......
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~--------- 92 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYS--FFSFPELQVLDLSRCE-IQTIEDGAY--QSLSHLSTLILTGNPIQSLA--------- 92 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTT--TTTCTTCSEEECTTCC-CCEECTTTT--TTCTTCCEEECTTCCCCEEC---------
T ss_pred CCccEEECCCC-cccccCHhH--hccccCCcEEECCCCc-CCccCHHHc--cCCcCCCEEECCCCccCccC---------
Confidence 46888888775 355555433 4568899999999884 444333334 36889999999887642210
Q ss_pred cchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccc-cccCCCCcC
Q 004225 145 LSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLV-NLVPPSTSF 223 (767)
Q Consensus 145 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~-~~~~~~~~~ 223 (767)
...+.++++|+.|.+.++.. ..+.......+++|++|+++++.... .++.....+
T Consensus 93 ---~~~~~~l~~L~~L~l~~n~l---------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 93 ---LGAFSGLSSLQKLVAVETNL---------------------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp ---TTTTTTCTTCCEEECTTSCC---------------------CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred ---hhhhcCCccccEEECCCCCc---------------------cccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence 12345667777777766542 12111123345778888887754322 123345667
Q ss_pred CCCCEEEeccCccchhhcCchhhhccccCc----EEeEccccccchhccccccccccccccccccceEeecCCCCccccc
Q 004225 224 QNLTNMVVSRCNNLKIVLTSLIAKTLVRLR----YMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFC 299 (767)
Q Consensus 224 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~----~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 299 (767)
++|++|++++|. ++.++... +..+++|+ +|+++++. +..++..... ..+|+.|+++++. ++.++
T Consensus 149 ~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~--------~~~L~~L~L~~n~-l~~~~ 216 (276)
T 2z62_A 149 TNLEHLDLSSNK-IQSIYCTD-LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFK--------EIRLKELALDTNQ-LKSVP 216 (276)
T ss_dssp TTCCEEECCSSC-CCEECGGG-GHHHHTCTTCCEEEECCSSC-CCEECTTSSC--------SCCEEEEECCSSC-CSCCC
T ss_pred CCCCEEECCCCC-CCcCCHHH-hhhhhhccccceeeecCCCc-ccccCccccC--------CCcccEEECCCCc-eeecC
Confidence 888888888774 33333222 33455565 67776654 4555443332 4578888888764 66665
Q ss_pred CCCccccCCccceEeecCC
Q 004225 300 SGNCAFKFPSLERLVVDDC 318 (767)
Q Consensus 300 ~~~~~~~~~~L~~L~i~~c 318 (767)
.. ....+++|++|++.++
T Consensus 217 ~~-~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 217 DG-IFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TT-TTTTCCSCCEEECCSS
T ss_pred Hh-HhcccccccEEEccCC
Confidence 42 2245788888888854
No 144
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.13 E-value=9.8e-10 Score=109.54 Aligned_cols=105 Identities=19% Similarity=0.274 Sum_probs=72.1
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCC
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGD 85 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 85 (767)
.+.+++++++. .++.+| ..+ .++|++|+++++. +..+. +..+..+++|++|++.++ .++.++...
T Consensus 16 ~~~~~l~~~~~-~l~~ip-~~~---~~~l~~L~l~~n~-l~~~~--------~~~~~~l~~L~~L~l~~n-~l~~i~~~~ 80 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLTAIP-SNI---PADTKKLDLQSNK-LSSLP--------SKAFHRLTKLRLLYLNDN-KLQTLPAGI 80 (270)
T ss_dssp TTTTEEECTTS-CCSSCC-SCC---CTTCSEEECCSSC-CSCCC--------TTSSSSCTTCCEEECCSS-CCSCCCTTT
T ss_pred CCCCEEEccCC-CCCccC-CCC---CCCCCEEECcCCC-CCeeC--------HHHhcCCCCCCEEECCCC-ccCeeChhh
Confidence 35788888875 466664 222 3579999999875 55441 134567899999999886 466665442
Q ss_pred CcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 86 LDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 86 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
...+++|++|+++++. +....+..+ ..+++|++|+++++.
T Consensus 81 --~~~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 81 --FKELKNLETLWVTDNK-LQALPIGVF--DQLVNLAELRLDRNQ 120 (270)
T ss_dssp --TSSCTTCCEEECCSSC-CCCCCTTTT--TTCSSCCEEECCSSC
T ss_pred --hcCCCCCCEEECCCCc-CCcCCHhHc--ccccCCCEEECCCCc
Confidence 2468999999999875 333333333 368899999999875
No 145
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.13 E-value=9.6e-10 Score=134.45 Aligned_cols=372 Identities=12% Similarity=0.071 Sum_probs=250.1
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhh------
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS--ENT------ 431 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~------ 431 (767)
.++.+++.+.+.++.+|..|+..|..++...... ....+++.++..+.+++ +.+|..|+.+|..++. ...
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~~~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~~~~~~~ 126 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QVETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPASSGSAL 126 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC-----CCT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCcccccch
Confidence 3778889999999999999999999998221111 11246788888888888 7899999999999987 111
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCch-hHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhc
Q 004225 432 NVVIDGGAVPIFVKLLS-SPSDDVREKAVWALGNIARSSPR-DRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 509 (767)
..-....++|.|...+. ++++.++..|+.+++.++...+. ..... ...++.++..+ .+++..+|+.++.+++.++
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L-~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQL-TSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGG-GCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHH-cCCcHHHHHHHHHHHHHHH
Confidence 01112357899999998 48899999999999999853222 11111 22456666677 6788999999999999999
Q ss_pred CCCCCCCccchhchHHHHHHHhcCCC-HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHH
Q 004225 510 QGKPEPPFDQVRPALPALAQLVHSND-NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLW 588 (767)
Q Consensus 510 ~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~ 588 (767)
...+.. .....++.++..+.+.+ ..++..++.++..++...+....... ..+++.+++.+.+.++ +++..|+.
T Consensus 204 ~~~~~~---~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~~~--~vR~~a~~ 277 (1230)
T 1u6g_C 204 MSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDD--ELREYCIQ 277 (1230)
T ss_dssp TTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCT--TTHHHHHH
T ss_pred HhcCHH---HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCH--HHHHHHHH
Confidence 765321 24567888887776443 46777788888888755433221111 3688999999998887 89999988
Q ss_pred HHhhhhccCCcce-e---------------------------------------------------e--hhhhHHHHHHH
Q 004225 589 TVRYIVKGDGFLT-Q---------------------------------------------------C--TGIAKEACRTI 614 (767)
Q Consensus 589 ~L~~l~~~~~~~~-~---------------------------------------------------~--l~v~~~a~~~l 614 (767)
+++.++...+... . . -.+|+.|+.++
T Consensus 278 ~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l 357 (1230)
T 1u6g_C 278 AFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCL 357 (1230)
T ss_dssp HHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHH
T ss_pred HHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHH
Confidence 8887764221100 0 0 03567777777
Q ss_pred hhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCC------------------CHHHHHHHHHcCC
Q 004225 615 SNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGG------------------THEQIKYLVRKGC 676 (767)
Q Consensus 615 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~------------------~~~~~~~l~~~~~ 676 (767)
..++...++.....+ ..+++.++..+.+.+..+|..++.++..++... .......++ ..+
T Consensus 358 ~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l 435 (1230)
T 1u6g_C 358 DAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNI 435 (1230)
T ss_dssp HHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THH
T ss_pred HHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHH
Confidence 777663332223333 346788888887888999999999888776410 011111111 235
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCCh--HHHHHHHHHH
Q 004225 677 IKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSN--GICEKAVKIL 754 (767)
Q Consensus 677 i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~--~v~~~a~~~l 754 (767)
++.+...+++.++.++..++.++..++..... ...++...+ ++.+...+.++++ +++..|...+
T Consensus 436 l~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~---------~l~~~l~~l-----l~~l~~~L~d~~~~~~v~~~a~~~l 501 (1230)
T 1u6g_C 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPG---------ALTQHIPVL-----VPGIIFSLNDKSSSSNLKIDALSCL 501 (1230)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT---------TTGGGHHHH-----HHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHchh---------hhHHHHHHH-----HHHHHHHHcCCCCcchHHHHHHHHH
Confidence 56666778899999999999999999876322 111222233 5667777777664 7888888888
Q ss_pred HHhc
Q 004225 755 EIYW 758 (767)
Q Consensus 755 ~~~~ 758 (767)
..++
T Consensus 502 ~~~~ 505 (1230)
T 1u6g_C 502 YVIL 505 (1230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 146
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=1.9e-09 Score=107.44 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=29.3
Q ss_pred CccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 65 PQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 65 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
++|++|+++++. ++.++... ...+++|++|+++++. +.......+ ..+++|++|+++++.
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~n~-l~~i~~~~~--~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKA--FHRLTKLRLLYLNDNK-LQTLPAGIF--KELKNLETLWVTDNK 96 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTS--SSSCTTCCEEECCSSC-CSCCCTTTT--SSCTTCCEEECCSSC
T ss_pred CCCCEEECcCCC-CCeeCHHH--hcCCCCCCEEECCCCc-cCeeChhhh--cCCCCCCEEECCCCc
Confidence 456666666542 44444322 3345666666666553 222222222 245566666665543
No 147
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.08 E-value=4.4e-08 Score=109.12 Aligned_cols=304 Identities=16% Similarity=0.101 Sum_probs=199.4
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGG 438 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~ 438 (767)
..+..++.+.+++...+..+.-++..++....+.+.- +++.+.+-+++++ +.++-.|+++++++.. +..+ .
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~~e~~~-----~ 146 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGSREMAE-----A 146 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCCHHHHH-----H
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCCHHHHH-----H
Confidence 5788899999999999999999999988544443322 4678888888888 9999999999999976 4333 3
Q ss_pred ChHHHHHhh--CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCC
Q 004225 439 AVPIFVKLL--SSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPP 516 (767)
Q Consensus 439 ~l~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 516 (767)
+++.+.+.+ .+.++.||..|+.++.++...+++.. -..+.++.+.+++ .+.++.++.+|+.++..++..++..-
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHH
Confidence 567888999 88999999999999999997666532 2247899999999 88999999999999999987653210
Q ss_pred ccchhchHHHHHHHhcCC-------------CHHHHHHHHHHHHhhccCC-hhHHHHHHhcCcHHHHHHHhcCCCCCCcc
Q 004225 517 FDQVRPALPALAQLVHSN-------------DNDVLRYACEALSCLSDGT-NDKIQAVIEADVCPRLVKLLLHPLPFPFG 582 (767)
Q Consensus 517 ~~~~~~~i~~L~~ll~~~-------------~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~~v 582 (767)
......++..|.+++..+ ++-.+..++..+..++... ++....+.+ +++.++..+.+......+
T Consensus 223 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l 300 (621)
T 2vgl_A 223 KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKV 300 (621)
T ss_dssp TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSH
T ss_pred HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccc
Confidence 112223334444444322 6788999999999988653 333333322 344444333211100000
Q ss_pred cc-hHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhc
Q 004225 583 LT-PPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 583 ~~-~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~ 661 (767)
+. ++.. .+..+|+.++..+.. .++..+ .++..|..++.+.++++|..|..++..++.
T Consensus 301 ~~~n~~~----------------aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~ 358 (621)
T 2vgl_A 301 QHSNAKN----------------AVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLAS 358 (621)
T ss_dssp HHHHHHH----------------HHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTT
T ss_pred cccchHH----------------HHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHh
Confidence 00 0000 345555666555542 233222 245566777777777788877777777776
Q ss_pred CCC-HHHHHHHHHcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHH
Q 004225 662 GGT-HEQIKYLVRKGCIKPLCDLLL-YADPEIVTICLKGLENILK 704 (767)
Q Consensus 662 ~~~-~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~ 704 (767)
... .+. ++ .....++..++ ++|..++..++..+..++.
T Consensus 359 ~~~~~~~----~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 359 SEFSHEA----VK-THIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp CTTTHHH----HH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred ccCcHHH----HH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 521 111 21 24556666676 7777777777777777764
No 148
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.06 E-value=1.8e-09 Score=108.55 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=62.5
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|+++++.++ .++.+|+ .+ .+++++|+++++. +..+. +..+..+++|++|+++++. ++.++.
T Consensus 8 ~l~~l~~l~~~~~-~l~~ip~-~~---~~~l~~L~L~~N~-l~~~~--------~~~~~~l~~L~~L~L~~n~-l~~~~~ 72 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTALPP-DL---PKDTTILHLSENL-LYTFS--------LATLMPYTRLTQLNLDRAE-LTKLQV 72 (290)
T ss_dssp CSTTCCEEECTTS-CCSSCCS-CC---CTTCCEEECTTSC-CSEEE--------GGGGTTCTTCCEEECTTSC-CCEEEC
T ss_pred ccCCccEEECCCC-CCCcCCC-CC---CCCCCEEEcCCCc-CCccC--------HHHhhcCCCCCEEECCCCc-cCcccC
Confidence 4667788887774 4666642 22 3568888887775 54442 1345567788888887753 554443
Q ss_pred CCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
. ..+++|+.|+++++.. ... +..+ ..+++|++|+++++.
T Consensus 73 ~----~~l~~L~~L~Ls~N~l-~~l-~~~~--~~l~~L~~L~l~~N~ 111 (290)
T 1p9a_G 73 D----GTLPVLGTLDLSHNQL-QSL-PLLG--QTLPALTVLDVSFNR 111 (290)
T ss_dssp C----SCCTTCCEEECCSSCC-SSC-CCCT--TTCTTCCEEECCSSC
T ss_pred C----CCCCcCCEEECCCCcC-CcC-chhh--ccCCCCCEEECCCCc
Confidence 2 3567788887777642 222 1112 256777777777664
No 149
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.06 E-value=5.6e-10 Score=113.95 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=54.4
Q ss_pred CcCCCceeeeeccCCcceEEeccchhhccccc--CCCCccceeecccccccccccCCCCcccC-----CCCccEEEeccC
Q 004225 30 SFVQLQCIEIVGCPVLEELIVMDNQEERKKNI--VMFPQLQYLKMSDLEKFTSFCTGDLDILE-----FPSLKELRISKC 102 (767)
Q Consensus 30 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-----~~~L~~L~l~~c 102 (767)
.+++|++|+++++. +... .+..+ ..+++|++|+++++. ++..+.. ... +++|++|+++++
T Consensus 93 ~l~~L~~L~L~~n~-l~~~--------~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGT--------APPPLLEATGPDLNILNLRNVS-WATRDAW---LAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSC--------CCCCSSSCCSCCCSEEEEESCB-CSSSSSH---HHHHHTTCCTTCCEEEEESC
T ss_pred CcCCccEEEccCCc-ccch--------hHHHHHHhcCCCccEEEccCCC-CcchhHH---HHHHHHhhcCCCcEEEeeCC
Confidence 57888888888875 3321 12222 567888888888764 4444311 122 288999999887
Q ss_pred CcccccccccccccccCCCceeeeCCccc
Q 004225 103 PEFMVRTTSIFTERVFPNLEKLKVDAKHV 131 (767)
Q Consensus 103 ~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 131 (767)
.. ....+..+ ..+++|++|++++|..
T Consensus 160 ~l-~~~~~~~~--~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 160 HS-LNFSCEQV--RVFPALSTLDLSDNPE 185 (312)
T ss_dssp SC-CCCCTTTC--CCCSSCCEEECCSCTT
T ss_pred CC-ccchHHHh--ccCCCCCEEECCCCCc
Confidence 53 33332333 3688899999988763
No 150
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.04 E-value=6.2e-09 Score=117.60 Aligned_cols=191 Identities=14% Similarity=0.065 Sum_probs=143.0
Q ss_pred chHHHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHHhcC-CchhHH
Q 004225 399 VVARFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDGGAVPIFV-KLLSSPSDDVREKAVWALGNIARS-SPRDRD 474 (767)
Q Consensus 399 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~l~~L~-~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~ 474 (767)
.+.++++.|++++ ++.|..|+++|.+++. ..++.+...+++..++ .+|.+++.++|..|+++|.|++.+ .++...
T Consensus 35 ~i~Pll~~L~S~~-~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPD-AKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSC-CSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 3455667799988 8999999999999999 7778888888887765 578889999999999999999954 467788
Q ss_pred HHHhcCCHHHHHHHHccC--------C-----C-------hHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcC
Q 004225 475 LVLSEKALIPLLAQLNKH--------A-----K-------PSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHS 533 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~--------~-----~-------~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~ 533 (767)
.+.+.|++++|..++.+. . . .++..+++.+|++++..+ .....+...+.++.++..+.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 889999999999998410 0 0 135566788888888765 233445557888989888753
Q ss_pred C---CHHHHHHHHHHHHhhccCChhHHHHHHhcCc---HHHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 534 N---DNDVLRYACEALSCLSDGTNDKIQAVIEADV---CPRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 534 ~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~---~~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
. ..+++..++.+|..+++.+++..+.+.+.+. +..+..+..+.+ ..+..+++++.|+
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~---~~~~la~giL~Ni 256 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD---PRAVMACGVLHNV 256 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC---TTHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc---HHHHHHHHHHHhH
Confidence 3 3789999999999999999888887776553 233333333333 4455666666665
No 151
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.04 E-value=3.5e-09 Score=106.46 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=51.1
Q ss_pred cccccEEEecCCCccccccC-CCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVP-PSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDE 277 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 277 (767)
+++|++|+++++. ++.+++ ....+++|++|+++++ .++.++.. .+..+++|+.|+++++. ++.++.....
T Consensus 99 l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~l~~~~~~----- 169 (290)
T 1p9a_G 99 LPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPPG-LLTPTPKLEKLSLANNN-LTELPAGLLN----- 169 (290)
T ss_dssp CTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTSC-CSCCCTTTTT-----
T ss_pred CCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccChh-hcccccCCCEEECCCCc-CCccCHHHhc-----
Confidence 4566666665543 223222 2445566666666655 23333322 23345666666665543 4444332211
Q ss_pred cccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 278 VITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 278 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
.+++|+.|++++. .++.++.+ .+..++|++|++.+.|
T Consensus 170 --~l~~L~~L~L~~N-~l~~ip~~--~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 170 --GLENLDTLLLQEN-SLYTIPKG--FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --TCTTCCEEECCSS-CCCCCCTT--TTTTCCCSEEECCSCC
T ss_pred --CcCCCCEEECCCC-cCCccChh--hcccccCCeEEeCCCC
Confidence 0455666666543 34444432 2344555555555443
No 152
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=9.7e-11 Score=123.77 Aligned_cols=248 Identities=15% Similarity=0.099 Sum_probs=135.4
Q ss_pred cCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccc--cccc-ccCCC----CcccCCCCccEEEecc
Q 004225 29 SSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLE--KFTS-FCTGD----LDILEFPSLKELRISK 101 (767)
Q Consensus 29 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~-~~~~~----~~~~~~~~L~~L~l~~ 101 (767)
..+++|++|++++|. +... +...+...+..+++|++|++++|. ++.. +|.+. -....+++|++|++++
T Consensus 29 ~~~~~L~~L~L~~n~-i~~~----~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNT-IGTE----AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp HHCSCCCEEECTTSE-ECHH----HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred hcCCCccEEECCCCC-CCHH----HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 456778888888774 3211 112223445567888888888762 2221 11100 0013568888888887
Q ss_pred CCccccc---ccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhc---------cccceeeecCCCCCC
Q 004225 102 CPEFMVR---TTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRL---------HTMKVLQIGGYSASL 169 (767)
Q Consensus 102 c~~l~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~~~~~~~ 169 (767)
|..-... .+..+ ..+++|++|++++|..... ....+...+..+ ++|+.|.++++....
T Consensus 104 n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n~l~~~--------~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFL--SKHTPLEHLYLHNNGLGPQ--------AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp CCCCTTTHHHHHHHH--HHCTTCCEEECCSSCCHHH--------HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcCCHHHHHHHHHHH--HhCCCCCEEECcCCCCCHH--------HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 7533210 11112 3578888888887764111 111222334444 677777776654210
Q ss_pred CcccccCCceeeeeecccccchhhccccccccccEEEecCCCccc----cccC-CCCcCCCCCEEEeccCccc----hhh
Q 004225 170 PYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLV----NLVP-PSTSFQNLTNMVVSRCNNL----KIV 240 (767)
Q Consensus 170 ~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~----~~~~-~~~~~~~L~~L~l~~c~~l----~~~ 240 (767)
. .+..+ ......+++|++|++++|..-. .+.+ ....+++|++|+|++|.-- ..+
T Consensus 174 ~----------------~~~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 174 G----------------SMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp G----------------GHHHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred H----------------HHHHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 0 00100 0112345788888888774321 1222 4567788999999887632 223
Q ss_pred cCchhhhccccCcEEeEccccccchh-----ccccccccccccccccccceEeecCCCCccc-----ccCCCccccCCcc
Q 004225 241 LTSLIAKTLVRLRYMKIKSCDRITEI-----VQGDDVVAKDEVITFRELKELKLVDLERLTS-----FCSGNCAFKFPSL 310 (767)
Q Consensus 241 ~~~~~~~~l~~L~~L~i~~c~~l~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~L 310 (767)
+. .+..+++|++|++++|. +... +..... ..+++|+.|+++++. ++. ++.. ....+|+|
T Consensus 237 ~~--~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~------~~~~~L~~L~L~~n~-i~~~g~~~l~~~-l~~~l~~L 305 (386)
T 2ca6_A 237 AI--ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSK------LENIGLQTLRLQYNE-IELDAVRTLKTV-IDEKMPDL 305 (386)
T ss_dssp HH--HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHT------CSSCCCCEEECCSSC-CBHHHHHHHHHH-HHHHCTTC
T ss_pred HH--HHccCCCcCEEECCCCC-CchhhHHHHHHHHhh------ccCCCeEEEECcCCc-CCHHHHHHHHHH-HHhcCCCc
Confidence 22 24567889999998886 3332 111100 016889999998874 443 4421 11347899
Q ss_pred ceEeecCCC
Q 004225 311 ERLVVDDCP 319 (767)
Q Consensus 311 ~~L~i~~c~ 319 (767)
++|++.+|+
T Consensus 306 ~~L~l~~N~ 314 (386)
T 2ca6_A 306 LFLELNGNR 314 (386)
T ss_dssp CEEECTTSB
T ss_pred eEEEccCCc
Confidence 999998885
No 153
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=3.2e-09 Score=100.07 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=25.6
Q ss_pred CCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 64 FPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
+++|++|++.++ .+++++. ...+++|++|++++| .+.... .+ ..+++|++|++++|.
T Consensus 43 l~~L~~L~l~~n-~i~~l~~----l~~l~~L~~L~l~~n-~~~~~~--~l--~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLTG----IEYAHNIKDLTINNI-HATNYN--PI--SGLSNLERLRIMGKD 99 (197)
T ss_dssp HHTCCEEEEESS-CCSCCTT----GGGCTTCSEEEEESC-CCSCCG--GG--TTCTTCCEEEEECTT
T ss_pred cCCccEEeccCC-CccChHH----HhcCCCCCEEEccCC-CCCcch--hh--hcCCCCCEEEeECCc
Confidence 445555555543 2333331 334555666665555 222111 11 245555555555543
No 154
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.97 E-value=4.1e-09 Score=107.37 Aligned_cols=234 Identities=16% Similarity=0.145 Sum_probs=126.9
Q ss_pred CccEEeeecCCCccc-cccCccccCcCCCceeeeeccCCcceEEeccchhhccccc--CCCCccceeecccccccccccC
Q 004225 7 NLTRLTLSCCMNLRC-LFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNI--VMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~-l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.++.|.+.++.--.. +........+++|++|+++++. +.... +..+ ..+++|++|+++++.--...+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~--------~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 135 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTM--------PPLPLEATGLALSSLRLRNVSWATGRSW 135 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCC--------CCCSSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccch--------hhhhhhccCCCCCEEEeecccccchhhh
Confidence 366777777642100 0000011235668888888875 33221 1222 5578888888887642221110
Q ss_pred C-CCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeee
Q 004225 84 G-DLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQI 162 (767)
Q Consensus 84 ~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 162 (767)
. ......+++|++|++++|.. ....+..+ ..+++|++|++++|...... .......+..+++|+.|.+
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~--------~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAHS-PAFSCEQV--RAFPALTSLDLSDNPGLGER--------GLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCSS-CCCCTTSC--CCCTTCCEEECCSCTTCHHH--------HHHTTSCTTSSCCCCSCBC
T ss_pred hHHHHhhhccCCCEEEeeCCCc-chhhHHHh--ccCCCCCEEECCCCCCccch--------hhhHHHhhhcCCCCCEEEC
Confidence 0 00023578888888888764 33332333 26788888888887642210 0000112346677888887
Q ss_pred cCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcC---CCCCEEEeccCccchh
Q 004225 163 GGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSF---QNLTNMVVSRCNNLKI 239 (767)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~---~~L~~L~l~~c~~l~~ 239 (767)
+++.... +......-...+++|++|+++++......+..+..+ ++|++|+++++. ++.
T Consensus 205 s~N~l~~------------------l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~ 265 (310)
T 4glp_A 205 RNTGMET------------------PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQ 265 (310)
T ss_dssp CSSCCCC------------------HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCS
T ss_pred CCCCCCc------------------hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCc
Confidence 7765210 001000001235788888887765333223333333 688888888764 445
Q ss_pred hcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCC
Q 004225 240 VLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLE 293 (767)
Q Consensus 240 ~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 293 (767)
++... +++|++|+++++. ++.++. ... +++|+.|++++.+
T Consensus 266 lp~~~----~~~L~~L~Ls~N~-l~~~~~-~~~--------l~~L~~L~L~~N~ 305 (310)
T 4glp_A 266 VPKGL----PAKLRVLDLSSNR-LNRAPQ-PDE--------LPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCC----CSCCSCEECCSCC-CCSCCC-TTS--------CCCCSCEECSSTT
T ss_pred hhhhh----cCCCCEEECCCCc-CCCCch-hhh--------CCCccEEECcCCC
Confidence 54332 3788888888775 555433 222 7888888888753
No 155
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.97 E-value=4.6e-10 Score=118.57 Aligned_cols=249 Identities=13% Similarity=0.154 Sum_probs=148.0
Q ss_pred CCCCccEEeeecCCCccccccC---ccccCcCCCceeeeeccC--CcceEEeccchhhcccccCCCCccceeeccccccc
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSS---STVSSFVQLQCIEIVGCP--VLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKF 78 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~---~~~~~l~~L~~L~l~~~~--~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 78 (767)
.+++|++|++++|. +....+. ..+..+++|++|++++|. .+..... .+...+...+..+++|++|+++++. +
T Consensus 30 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~-~~~~~l~~~l~~~~~L~~L~Ls~n~-l 106 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP-EALRLLLQALLKCPKLHTVRLSDNA-F 106 (386)
T ss_dssp HCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSH-HHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred cCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchh-HHHHHHHHHHhhCCcccEEECCCCc-C
Confidence 46789999999984 4332111 123578999999999873 2221000 0111222334678999999999875 3
Q ss_pred cc-----ccCCCCcccCCCCccEEEeccCCcccccccccccc--ccc---------CCCceeeeCCcccccccccCCCcc
Q 004225 79 TS-----FCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTE--RVF---------PNLEKLKVDAKHVVTNKYHLGDER 142 (767)
Q Consensus 79 ~~-----~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~~l---------~~L~~L~l~~~~~~~~~~~~~~~~ 142 (767)
.. ++.. ...+++|++|++++|..- ...+..++. ..+ ++|++|++++|.....
T Consensus 107 ~~~~~~~l~~~---l~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-------- 174 (386)
T 2ca6_A 107 GPTAQEPLIDF---LSKHTPLEHLYLHNNGLG-PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-------- 174 (386)
T ss_dssp CTTTHHHHHHH---HHHCTTCCEEECCSSCCH-HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG--------
T ss_pred CHHHHHHHHHH---HHhCCCCCEEECcCCCCC-HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH--------
Confidence 33 2211 356899999999999742 211111110 123 8999999998864211
Q ss_pred hhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCcc----ccccC
Q 004225 143 TILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHL----VNLVP 218 (767)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~----~~~~~ 218 (767)
....+...+..+++|+.|.++++..... ++..+.......+++|++|+++++..- ..++.
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~----------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPE----------------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHH----------------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHh----------------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 1122334567788999998888752100 011111113345678888888877642 33333
Q ss_pred CCCcCCCCCEEEeccCccchhhcCchh---h--hccccCcEEeEccccccch-----hcccc-ccccccccccccccceE
Q 004225 219 PSTSFQNLTNMVVSRCNNLKIVLTSLI---A--KTLVRLRYMKIKSCDRITE-----IVQGD-DVVAKDEVITFRELKEL 287 (767)
Q Consensus 219 ~~~~~~~L~~L~l~~c~~l~~~~~~~~---~--~~l~~L~~L~i~~c~~l~~-----~~~~~-~~~~~~~~~~~~~L~~L 287 (767)
.+..+++|++|+|++|. +++.....+ . ..+++|++|++++|. +.. ++... .. +++|+.|
T Consensus 239 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~--------l~~L~~L 308 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEK--------MPDLLFL 308 (386)
T ss_dssp HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHH--------CTTCCEE
T ss_pred HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhc--------CCCceEE
Confidence 45677889999998886 333211111 1 237889999998876 333 44332 12 6889999
Q ss_pred eecCCC
Q 004225 288 KLVDLE 293 (767)
Q Consensus 288 ~l~~~~ 293 (767)
++++++
T Consensus 309 ~l~~N~ 314 (386)
T 2ca6_A 309 ELNGNR 314 (386)
T ss_dssp ECTTSB
T ss_pred EccCCc
Confidence 998875
No 156
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.94 E-value=1.1e-07 Score=105.94 Aligned_cols=292 Identities=12% Similarity=0.101 Sum_probs=182.6
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhc--cCCCCHHHHHHHHHHHHHHHhhhhHHHHhC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFL--TREDNPQLQLEAARALTNIASENTNVVIDG 437 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll--~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 437 (767)
.+..+.+-+.++++.++-.|+..++++..+. +. ..+++.+.+.+ .+.+ +.+|..|+.++.++.....+.+-..
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e---~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~~~~ 186 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGSRE---MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLVPMG 186 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH---HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGCCCC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCCHH---HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhcCch
Confidence 3666777888999999999999999987433 22 24578888888 7777 9999999999999998323333235
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc---c---CC----------ChHHHHHH
Q 004225 438 GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN---K---HA----------KPSMLRNA 501 (767)
Q Consensus 438 ~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~---~~----------~~~~~~~~ 501 (767)
+.++.+.++|.+.|+.++..|+.++..++..++.. + ...++.+++.+. . .+ ++-.+...
T Consensus 187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence 89999999999999999999999999999765542 1 123344444332 1 11 67899999
Q ss_pred HHHHHhhcCCCCCCCccchhchHHHHHHHh---------cCCC--HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHH
Q 004225 502 TKTLSRFCQGKPEPPFDQVRPALPALAQLV---------HSND--NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLV 570 (767)
Q Consensus 502 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll---------~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 570 (767)
+..+..++..++..........++.++..+ ++.+ ..+...++.++..+.. .++... .++..+.
T Consensus 262 l~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~ 335 (621)
T 2vgl_A 262 LRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLG 335 (621)
T ss_dssp HHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHH
Confidence 999998875421100111112333333222 1222 3788889999888863 222222 2567788
Q ss_pred HHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh-cCCchhH
Q 004225 571 KLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ-NAEFFTK 649 (767)
Q Consensus 571 ~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~ 649 (767)
.++.+.++ +++..|+..+..++...+. .. ++ ....+.++..++ +++..+|
T Consensus 336 ~~L~~~~~--niry~aL~~l~~l~~~~~~----------------------~~----~~-~~~~~~i~~~L~~d~d~~Ir 386 (621)
T 2vgl_A 336 QFLQHRET--NLRYLALESMCTLASSEFS----------------------HE----AV-KTHIETVINALKTERDVSVR 386 (621)
T ss_dssp HHSSCSCH--HHHHHHHHHHHHHTTCTTT----------------------HH----HH-HTTHHHHHHHHTTCCCHHHH
T ss_pred HHhcCCCc--chHHHHHHHHHHHHhccCc----------------------HH----HH-HHHHHHHHHHhccCCCHhHH
Confidence 88988887 5555565555555433210 01 11 123455555566 5666666
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 650 KEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 650 ~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
..|...+..++. .+.+.. ++..|.+.+.+.+.+++..++.+|..++.
T Consensus 387 ~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 387 QRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 666666666653 233333 33444445555566666666665555543
No 157
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.94 E-value=4.3e-09 Score=107.34 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=121.7
Q ss_pred CCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhc-----cccceeeecC
Q 004225 90 EFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRL-----HTMKVLQIGG 164 (767)
Q Consensus 90 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~ 164 (767)
.+++|++|++++|..........+ ...+++|++|+++++..... + ..+..+ ++|+.|.+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~-~------------~~~~~l~~~~~~~L~~L~L~~ 158 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL-EATGPDLNILNLRNVSWATR-D------------AWLAELQQWLKPGLKVLSIAQ 158 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS-SCCSCCCSEEEEESCBCSSS-S------------SHHHHHHTTCCTTCCEEEEES
T ss_pred CcCCccEEEccCCcccchhHHHHH-HhcCCCccEEEccCCCCcch-h------------HHHHHHHHhhcCCCcEEEeeC
Confidence 478888888888754322222221 13678888888887763221 1 123333 6777777766
Q ss_pred CCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCcccc--ccCCC--CcCCCCCEEEeccCccchhh
Q 004225 165 YSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVN--LVPPS--TSFQNLTNMVVSRCNNLKIV 240 (767)
Q Consensus 165 ~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~--~~~~~--~~~~~L~~L~l~~c~~l~~~ 240 (767)
+. +..+.......+++|++|+++++..... .+... ..+++|++|++++|. ++.+
T Consensus 159 N~---------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 216 (312)
T 1wwl_A 159 AH---------------------SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METP 216 (312)
T ss_dssp CS---------------------CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCH
T ss_pred CC---------------------CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-Ccch
Confidence 54 2222223334567888888887664322 11122 667888999998875 3321
Q ss_pred c--CchhhhccccCcEEeEccccccchhcc-ccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecC
Q 004225 241 L--TSLIAKTLVRLRYMKIKSCDRITEIVQ-GDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDD 317 (767)
Q Consensus 241 ~--~~~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~ 317 (767)
+ +..++.++++|++|+++++. +...+. .... .+++|+.|+++++ +++.++.. . .++|++|++++
T Consensus 217 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~ip~~--~--~~~L~~L~Ls~ 283 (312)
T 1wwl_A 217 SGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD-------WPSQLNSLNLSFT-GLKQVPKG--L--PAKLSVLDLSY 283 (312)
T ss_dssp HHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC-------CCTTCCEEECTTS-CCSSCCSS--C--CSEEEEEECCS
T ss_pred HHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh-------hcCCCCEEECCCC-ccChhhhh--c--cCCceEEECCC
Confidence 1 12334567889999998876 444331 1111 1678999999876 35566643 1 27899999988
Q ss_pred CCCcccccccCCCCcccchhhcccc
Q 004225 318 CPDMKIFSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 318 c~~l~~~~~~~~~~~~L~~l~i~~~ 342 (767)
+ .++.+|. ....++|+.+++++.
T Consensus 284 N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 284 N-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp S-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred C-CCCCChh-HhhCCCCCEEeccCC
Confidence 7 5666655 445567888877763
No 158
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.91 E-value=3.5e-09 Score=107.93 Aligned_cols=208 Identities=14% Similarity=0.099 Sum_probs=124.2
Q ss_pred CCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCCCC
Q 004225 91 FPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSASLP 170 (767)
Q Consensus 91 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (767)
+++|++|++++|.........++. ..+++|++|++++|......+. .. ...+..+++|+.|.++++.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~-------~~-~~~~~~~~~L~~L~Ls~n~---- 156 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLE-ATGLALSSLRLRNVSWATGRSW-------LA-ELQQWLKPGLKVLSIAQAH---- 156 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSS-CCCBCCSSCEEESCCCSSTTSS-------HH-HHHTTBCSCCCEEEEECCS----
T ss_pred cCceeEEEeeCCEeccchhhhhhh-ccCCCCCEEEeecccccchhhh-------hH-HHHhhhccCCCEEEeeCCC----
Confidence 467888888887543322212110 3578888888887764321100 00 0112356667777666654
Q ss_pred cccccCCceeeeeecccccchhhccccccccccEEEecCCCcccc--ccCC--CCcCCCCCEEEeccCccchhhcC--ch
Q 004225 171 YEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVN--LVPP--STSFQNLTNMVVSRCNNLKIVLT--SL 244 (767)
Q Consensus 171 ~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~--~~~~--~~~~~~L~~L~l~~c~~l~~~~~--~~ 244 (767)
+..+.......+++|++|+++++..... +... ...+++|++|++++|. ++.++. ..
T Consensus 157 -----------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~ 218 (310)
T 4glp_A 157 -----------------SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAA 218 (310)
T ss_dssp -----------------SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHH
T ss_pred -----------------cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHH
Confidence 2222223344568899999988764321 2212 2578899999999885 443322 11
Q ss_pred hhhccccCcEEeEccccccchh-ccccccccccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCccc
Q 004225 245 IAKTLVRLRYMKIKSCDRITEI-VQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKI 323 (767)
Q Consensus 245 ~~~~l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~ 323 (767)
+++++++|++|+++++. +... +...... ..+++|++|+++++ +++.++.. .+++|++|+++++ .++.
T Consensus 219 l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~-----~~~~~L~~L~Ls~N-~l~~lp~~----~~~~L~~L~Ls~N-~l~~ 286 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNS-LRATVNPSAPRC-----MWSSALNSLNLSFA-GLEQVPKG----LPAKLRVLDLSSN-RLNR 286 (310)
T ss_dssp HHHHTCCCSSEECTTSC-CCCCCCSCCSSC-----CCCTTCCCEECCSS-CCCSCCSC----CCSCCSCEECCSC-CCCS
T ss_pred HHhcCCCCCEEECCCCC-CCccchhhHHhc-----cCcCcCCEEECCCC-CCCchhhh----hcCCCCEEECCCC-cCCC
Confidence 24568999999999876 4444 3322220 01379999999876 56677643 2489999999888 5655
Q ss_pred ccccCCCCcccchhhcccc
Q 004225 324 FSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 324 ~~~~~~~~~~L~~l~i~~~ 342 (767)
+|. ....++|+.+++++.
T Consensus 287 ~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 287 APQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCC-TTSCCCCSCEECSST
T ss_pred Cch-hhhCCCccEEECcCC
Confidence 554 334467888888763
No 159
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.90 E-value=6.5e-10 Score=116.12 Aligned_cols=113 Identities=8% Similarity=-0.043 Sum_probs=51.2
Q ss_pred ccccEEEecCCCccccccC----CCCcC-CCCCEEEeccCccchhhc----CchhhhccccCcEEeEccccccchhcccc
Q 004225 200 NNLVILRVKGCDHLVNLVP----PSTSF-QNLTNMVVSRCNNLKIVL----TSLIAKTLVRLRYMKIKSCDRITEIVQGD 270 (767)
Q Consensus 200 ~~L~~L~i~~~~~~~~~~~----~~~~~-~~L~~L~l~~c~~l~~~~----~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 270 (767)
++|++|++++|..-..... ....+ ++|++|++++|. +++.. +..+....++|++|++++|. +...+...
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~ 244 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLEN 244 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHH
Confidence 3677777766542211110 11223 367777777664 33311 11111113467777777664 33221100
Q ss_pred ccccccccccccccceEeecCCC-------CcccccCCCccccCCccceEeecCCC
Q 004225 271 DVVAKDEVITFRELKELKLVDLE-------RLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 271 ~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
.. .....+++|+.|+++++. .+..+... ...+++|+.|++++++
T Consensus 245 l~---~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~--~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 245 LK---LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA--FPNIQKIILVDKNGKE 295 (362)
T ss_dssp HH---HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT--STTCCEEEEECTTSCB
T ss_pred HH---HHHhcCCCccEEEeccCCccccCHHHHHHHHHH--hccCCceEEEecCCCc
Confidence 00 000015677777777664 12222211 2345667777776663
No 160
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.89 E-value=1.3e-08 Score=95.82 Aligned_cols=152 Identities=21% Similarity=0.240 Sum_probs=90.5
Q ss_pred cccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhcc
Q 004225 116 RVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRE 195 (767)
Q Consensus 116 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~ 195 (767)
..+++|++|+++++... + +. .+..+++|+.|.++++. ++.+ +.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~------------l~-~l~~l~~L~~L~l~~n~---------------------~~~~--~~ 83 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-D------------LT-GIEYAHNIKDLTINNIH---------------------ATNY--NP 83 (197)
T ss_dssp HHHHTCCEEEEESSCCS-C------------CT-TGGGCTTCSEEEEESCC---------------------CSCC--GG
T ss_pred hhcCCccEEeccCCCcc-C------------hH-HHhcCCCCCEEEccCCC---------------------CCcc--hh
Confidence 46788888888776431 1 01 14445566666555542 2221 22
Q ss_pred ccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccc
Q 004225 196 SSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAK 275 (767)
Q Consensus 196 ~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 275 (767)
...+++|++|+++++......+.....+++|++|++++|.-....+ . .+..+++|++|++++|..+..++ ....
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~-~l~~l~~L~~L~L~~n~~i~~~~-~l~~--- 157 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-T-KINTLPKVNSIDLSYNGAITDIM-PLKT--- 157 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-H-HHTTCSSCCEEECCSCTBCCCCG-GGGG---
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-H-HHhhCCCCCEEEccCCCCccccH-hhcC---
Confidence 3345778888887765433344456677888888888775433222 2 23567888888888877566654 2222
Q ss_pred cccccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 276 DEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 276 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
+++|+.|+++++. ++.++ ....+|+|++|++++.+
T Consensus 158 -----l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 158 -----LPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -----CSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC-
T ss_pred -----CCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCcc
Confidence 6788888887763 44443 23457778888877653
No 161
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.88 E-value=1.4e-08 Score=102.19 Aligned_cols=169 Identities=15% Similarity=0.218 Sum_probs=97.6
Q ss_pred cCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCccccc
Q 004225 29 SSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVR 108 (767)
Q Consensus 29 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 108 (767)
..+++|++|+++++. +..+ +.+..+++|++|+++++. ++.++. ...+++|+.|++++|.. ...
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~----------~~~~~l~~L~~L~L~~n~-l~~~~~----l~~l~~L~~L~l~~n~l-~~~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSV----------QGIQYLPNVTKLFLNGNK-LTDIKP----LANLKNLGWLFLDENKV-KDL 105 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCC----------TTGGGCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSSCC-CCG
T ss_pred hhcCcccEEEccCCC-cccC----------hhHhcCCCCCEEEccCCc-cCCCcc----cccCCCCCEEECCCCcC-CCC
Confidence 356677777777663 4433 234456777777777653 444432 34577777777777642 221
Q ss_pred ccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccc
Q 004225 109 TTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHL 188 (767)
Q Consensus 109 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l 188 (767)
+. + ..+++|++|++++|....- ..+..+++|+.|.++++..
T Consensus 106 -~~-l--~~l~~L~~L~L~~n~i~~~--------------~~l~~l~~L~~L~l~~n~l--------------------- 146 (291)
T 1h6t_A 106 -SS-L--KDLKKLKSLSLEHNGISDI--------------NGLVHLPQLESLYLGNNKI--------------------- 146 (291)
T ss_dssp -GG-G--TTCTTCCEEECTTSCCCCC--------------GGGGGCTTCCEEECCSSCC---------------------
T ss_pred -hh-h--ccCCCCCEEECCCCcCCCC--------------hhhcCCCCCCEEEccCCcC---------------------
Confidence 11 2 3577778887777652110 1244555666666655431
Q ss_pred cchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEcccc
Q 004225 189 EHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCD 261 (767)
Q Consensus 189 ~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 261 (767)
..+ +....+++|++|+++++. +..+.+ ...+++|+.|++++| .+++++. +..+++|+.|++++++
T Consensus 147 ~~~--~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 147 TDI--TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCC--GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred Ccc--hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 111 122335777778777664 333333 566778888888776 3444432 3567788888887765
No 162
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.88 E-value=9.2e-09 Score=113.96 Aligned_cols=169 Identities=15% Similarity=0.204 Sum_probs=105.6
Q ss_pred cCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCccccc
Q 004225 29 SSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVR 108 (767)
Q Consensus 29 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 108 (767)
..+++|+.|+++++. +..+ +.+..+++|+.|+|+++. +..++. ...+++|+.|++++|.. ...
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l----------~~l~~l~~L~~L~Ls~N~-l~~~~~----l~~l~~L~~L~Ls~N~l-~~l 102 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSV----------QGIQYLPNVTKLFLNGNK-LTDIKP----LTNLKNLGWLFLDENKI-KDL 102 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCC----------TTGGGCTTCCEEECTTSC-CCCCGG----GGGCTTCCEEECCSSCC-CCC
T ss_pred hcCCCCCEEECcCCC-CCCC----------hHHccCCCCCEEEeeCCC-CCCChh----hccCCCCCEEECcCCCC-CCC
Confidence 467778888887764 4443 345567888888888763 444443 35678888888887743 221
Q ss_pred ccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccc
Q 004225 109 TTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHL 188 (767)
Q Consensus 109 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l 188 (767)
+. + ..+++|++|++++|..... ..+..+++|+.|.++++..
T Consensus 103 -~~-l--~~l~~L~~L~Ls~N~l~~l--------------~~l~~l~~L~~L~Ls~N~l--------------------- 143 (605)
T 1m9s_A 103 -SS-L--KDLKKLKSLSLEHNGISDI--------------NGLVHLPQLESLYLGNNKI--------------------- 143 (605)
T ss_dssp -TT-S--TTCTTCCEEECTTSCCCCC--------------GGGGGCTTCSEEECCSSCC---------------------
T ss_pred -hh-h--ccCCCCCEEEecCCCCCCC--------------ccccCCCccCEEECCCCcc---------------------
Confidence 11 2 3678888888887753210 1245566777777766541
Q ss_pred cchhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEcccc
Q 004225 189 EHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCD 261 (767)
Q Consensus 189 ~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 261 (767)
..+ .....+++|++|+++++.. ..+.+ ...+++|+.|+|++|. +.+++ .+..+++|+.|++++|+
T Consensus 144 ~~l--~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~-i~~l~---~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 144 TDI--TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNH-ISDLR---ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCC--GGGGSCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCBCG---GGTTCTTCSEEECCSEE
T ss_pred CCc--hhhcccCCCCEEECcCCcC-CCchh-hccCCCCCEEECcCCC-CCCCh---HHccCCCCCEEEccCCc
Confidence 111 2233457888888877643 33333 6677888888888873 44442 24568888888888776
No 163
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.86 E-value=4.8e-07 Score=78.38 Aligned_cols=218 Identities=14% Similarity=0.150 Sum_probs=174.4
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCC
Q 004225 435 IDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPE 514 (767)
Q Consensus 435 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 514 (767)
++..++..++.+|+++-..++.+|+..+.+++...++.... .+..|+.+++.++..+.-.....+++.++...
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-- 101 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-- 101 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC--
Confidence 35567889999999998999999999999999887876554 35678888878888899888999999999764
Q ss_pred CCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhh
Q 004225 515 PPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIV 594 (767)
Q Consensus 515 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~ 594 (767)
.....+.+|.+..-..-.|++++.+...+|..++..++..... ++.-+..++.+++.
T Consensus 102 --Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~---------------- 158 (253)
T 2db0_A 102 --PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNR---------------- 158 (253)
T ss_dssp --HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSH----------------
T ss_pred --HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCCh----------------
Confidence 3467788999998888899999999999999999988766553 56678889998776
Q ss_pred ccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 004225 595 KGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRK 674 (767)
Q Consensus 595 ~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~ 674 (767)
.-+..|+..++.+..+...... -.+|.|+.+|.+.+..||..|+.+|.+++.. ++....
T Consensus 159 ----------~Dkl~aLnFi~alGen~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRk----- 217 (253)
T 2db0_A 159 ----------EDKLTALNFIEAMGENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRK----- 217 (253)
T ss_dssp ----------HHHHHHHHHHHTCCTTTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHH-----
T ss_pred ----------HHHHHHHHHHHHHhccCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHH-----
Confidence 4455555566655555544443 3689999999999999999999999999997 566433
Q ss_pred CChHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 004225 675 GCIKPLCDLLLYADPEIVTICLKGLENILK 704 (767)
Q Consensus 675 ~~i~~L~~ll~~~~~~v~~~al~aL~~l~~ 704 (767)
++..-++=+++.+..+++..-.+|..+.-
T Consensus 218 -ii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 218 -VVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp -HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 24444556778888999999999998875
No 164
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.81 E-value=2.1e-08 Score=100.86 Aligned_cols=167 Identities=14% Similarity=0.192 Sum_probs=94.4
Q ss_pred CCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcc
Q 004225 63 MFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDER 142 (767)
Q Consensus 63 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 142 (767)
.+++|++|++.++ .+..++. ...+++|++|++++|.. +...+ + ..+++|++|++++|... .
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~~----~~~l~~L~~L~L~~n~l-~~~~~--l--~~l~~L~~L~l~~n~l~-~-------- 104 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQG----IQYLPNVTKLFLNGNKL-TDIKP--L--ANLKNLGWLFLDENKVK-D-------- 104 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCTT----GGGCTTCCEEECCSSCC-CCCGG--G--TTCTTCCEEECCSSCCC-C--------
T ss_pred hcCcccEEEccCC-CcccChh----HhcCCCCCEEEccCCcc-CCCcc--c--ccCCCCCEEECCCCcCC-C--------
Confidence 3678888888876 3554432 35678888888887753 22221 2 36788888888876521 1
Q ss_pred hhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCc
Q 004225 143 TILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTS 222 (767)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~ 222 (767)
+ ..+..+++|+.|.++++. +..+ +....+++|++|+++++. +..+ .....
T Consensus 105 ----~-~~l~~l~~L~~L~L~~n~---------------------i~~~--~~l~~l~~L~~L~l~~n~-l~~~-~~l~~ 154 (291)
T 1h6t_A 105 ----L-SSLKDLKKLKSLSLEHNG---------------------ISDI--NGLVHLPQLESLYLGNNK-ITDI-TVLSR 154 (291)
T ss_dssp ----G-GGGTTCTTCCEEECTTSC---------------------CCCC--GGGGGCTTCCEEECCSSC-CCCC-GGGGG
T ss_pred ----C-hhhccCCCCCEEECCCCc---------------------CCCC--hhhcCCCCCCEEEccCCc-CCcc-hhhcc
Confidence 0 114455566666665553 1111 122334677777776653 2332 34456
Q ss_pred CCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCC
Q 004225 223 FQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDL 292 (767)
Q Consensus 223 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 292 (767)
+++|+.|++++|. ++++++ +..+++|++|+++++. ++.++. ... +++|+.|+++++
T Consensus 155 l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~L~~N~-i~~l~~-l~~--------l~~L~~L~l~~n 210 (291)
T 1h6t_A 155 LTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKNH-ISDLRA-LAG--------LKNLDVLELFSQ 210 (291)
T ss_dssp CTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCBCGG-GTT--------CTTCSEEEEEEE
T ss_pred CCCCCEEEccCCc-cccchh---hcCCCccCEEECCCCc-CCCChh-hcc--------CCCCCEEECcCC
Confidence 6777777777663 444432 3456777777776653 444322 111 566666666654
No 165
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.79 E-value=7.3e-08 Score=94.69 Aligned_cols=105 Identities=12% Similarity=0.202 Sum_probs=72.8
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCC
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGD 85 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 85 (767)
.+.+++++.+. .+..+|. .+ .++|++|+++++. +..+. +..+..+++|++|+++++ .++.++...
T Consensus 14 ~~~~~l~~~~~-~l~~~p~-~~---~~~l~~L~L~~n~-l~~~~--------~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPS-GI---PADTEKLDLQSTG-LATLS--------DATFRGLTKLTWLNLDYN-QLQTLSAGV 78 (251)
T ss_dssp GGGTEEECTTC-CCSSCCS-CC---CTTCCEEECTTSC-CCCCC--------TTTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred CCCeEEecCCC-CccccCC-CC---CCCCCEEEccCCC-cCccC--------HhHhcCcccCCEEECCCC-cCCccCHhH
Confidence 45788888875 4677643 22 2579999999875 44431 134567899999999986 466555433
Q ss_pred CcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 86 LDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 86 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
...+++|++|+++++. +....+..+ ..+++|++|+++++.
T Consensus 79 --~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 79 --FDDLTELGTLGLANNQ-LASLPLGVF--DHLTQLDKLYLGGNQ 118 (251)
T ss_dssp --TTTCTTCCEEECTTSC-CCCCCTTTT--TTCTTCCEEECCSSC
T ss_pred --hccCCcCCEEECCCCc-ccccChhHh--cccCCCCEEEcCCCc
Confidence 3568999999999875 333333334 368999999999875
No 166
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.77 E-value=2e-08 Score=113.40 Aligned_cols=197 Identities=17% Similarity=0.095 Sum_probs=150.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC--CCCCc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK--PEPPF 517 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--~~~~~ 517 (767)
+.++++.|++++++.|..|+++|++++. ++..++.+...|+|..++.-+..+++.++++.|+++|.|++.+. ..+..
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 4446677999999999999999999996 57888889999999887654338899999999999999999764 33455
Q ss_pred cchhchHHHHHHHhcCCC---------------------HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCC
Q 004225 518 DQVRPALPALAQLVHSND---------------------NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHP 576 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 576 (767)
+...++++.|..+++... .++...++.+|.+++..+++....+...+.++.++..+.+.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 667789999998875210 23556788899999998888888888888999999988654
Q ss_pred CCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHH--HHHHHhcCCchhHHHHHH
Q 004225 577 LPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGP--LVDLLQNAEFFTKKEAAR 654 (767)
Q Consensus 577 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~--L~~ll~~~~~~v~~~a~~ 654 (767)
+. . .. +++..|+.+|.+++.++++..+.+.+.+.... ++..+...+...+..+++
T Consensus 195 ~~--~---------------~~------~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~g 251 (684)
T 4gmo_A 195 DI--A---------------PQ------DIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACG 251 (684)
T ss_dssp CC--S---------------CH------HHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHH
T ss_pred CC--C---------------cH------HHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHH
Confidence 43 0 00 57778888888888888888888887765332 222233455567888899
Q ss_pred HHHHhh
Q 004225 655 AISNAI 660 (767)
Q Consensus 655 ~L~nl~ 660 (767)
.+.|+.
T Consensus 252 iL~Ni~ 257 (684)
T 4gmo_A 252 VLHNVF 257 (684)
T ss_dssp HHHHHH
T ss_pred HHHhHh
Confidence 999874
No 167
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.74 E-value=3.7e-09 Score=110.34 Aligned_cols=133 Identities=12% Similarity=0.089 Sum_probs=80.3
Q ss_pred ccccEEEecCCCccc----cccCCCCcCC-CCCEEEeccCccchhhcCchh---hhcc-ccCcEEeEccccccch-----
Q 004225 200 NNLVILRVKGCDHLV----NLVPPSTSFQ-NLTNMVVSRCNNLKIVLTSLI---AKTL-VRLRYMKIKSCDRITE----- 265 (767)
Q Consensus 200 ~~L~~L~i~~~~~~~----~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~---~~~l-~~L~~L~i~~c~~l~~----- 265 (767)
++|++|+++++..-. .+......++ +|++|++++|. +++.....+ ...+ ++|++|++++|. +..
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~ 215 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE 215 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH
Confidence 578888888764321 1111123344 99999999984 444433221 2334 599999999987 443
Q ss_pred hccccccccccccccccccceEeecCCCCcccccC---CCccccCCccceEeecCCC--C-----cccccccCCCCcccc
Q 004225 266 IVQGDDVVAKDEVITFRELKELKLVDLERLTSFCS---GNCAFKFPSLERLVVDDCP--D-----MKIFSEGKLSTPKLH 335 (767)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~i~~c~--~-----l~~~~~~~~~~~~L~ 335 (767)
++..... ..++|++|+++++ .++..+. ......+++|++|++++|. . +..++......++|+
T Consensus 216 l~~~l~~-------~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 216 LAYIFSS-------IPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp HHHHHHH-------SCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred HHHHHhc-------CCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 2221111 0259999999987 4544332 1112467899999999995 1 233343344456788
Q ss_pred hhhcccc
Q 004225 336 KVERHGE 342 (767)
Q Consensus 336 ~l~i~~~ 342 (767)
.+++++.
T Consensus 288 ~LdL~~N 294 (362)
T 3goz_A 288 LVDKNGK 294 (362)
T ss_dssp EECTTSC
T ss_pred EEecCCC
Confidence 8888773
No 168
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.72 E-value=4.1e-08 Score=108.75 Aligned_cols=168 Identities=14% Similarity=0.175 Sum_probs=106.7
Q ss_pred CCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcc
Q 004225 63 MFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDER 142 (767)
Q Consensus 63 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 142 (767)
.+++|+.|++.++. +..++. ...+++|+.|++++|.. ....+ + ..+++|+.|++++|... .+
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~~----l~~l~~L~~L~Ls~N~l-~~~~~--l--~~l~~L~~L~Ls~N~l~-~l------- 102 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQG----IQYLPNVTKLFLNGNKL-TDIKP--L--TNLKNLGWLFLDENKIK-DL------- 102 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCTT----GGGCTTCCEEECTTSCC-CCCGG--G--GGCTTCCEEECCSSCCC-CC-------
T ss_pred cCCCCCEEECcCCC-CCCChH----HccCCCCCEEEeeCCCC-CCChh--h--ccCCCCCEEECcCCCCC-CC-------
Confidence 47788888888764 555542 45688999999988753 32221 2 47888999998887531 11
Q ss_pred hhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCc
Q 004225 143 TILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTS 222 (767)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~ 222 (767)
..+..+++|+.|.++++.. ..+ +....+++|+.|+++++.. ..+ ..+..
T Consensus 103 ------~~l~~l~~L~~L~Ls~N~l---------------------~~l--~~l~~l~~L~~L~Ls~N~l-~~l-~~l~~ 151 (605)
T 1m9s_A 103 ------SSLKDLKKLKSLSLEHNGI---------------------SDI--NGLVHLPQLESLYLGNNKI-TDI-TVLSR 151 (605)
T ss_dssp ------TTSTTCTTCCEEECTTSCC---------------------CCC--GGGGGCTTCSEEECCSSCC-CCC-GGGGS
T ss_pred ------hhhccCCCCCEEEecCCCC---------------------CCC--ccccCCCccCEEECCCCcc-CCc-hhhcc
Confidence 1244566677776666541 111 2233457888888877643 333 44567
Q ss_pred CCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCC
Q 004225 223 FQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLE 293 (767)
Q Consensus 223 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 293 (767)
+++|+.|+|++|. +..+++ +..+++|+.|++++|. +..++ .... +++|+.|++++++
T Consensus 152 l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~-i~~l~-~l~~--------l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 152 LTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKNH-ISDLR-ALAG--------LKNLDVLELFSQE 208 (605)
T ss_dssp CTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCBCG-GGTT--------CTTCSEEECCSEE
T ss_pred cCCCCEEECcCCc-CCCchh---hccCCCCCEEECcCCC-CCCCh-HHcc--------CCCCCEEEccCCc
Confidence 7888888888874 444433 4568888888888774 44442 2222 7788888887754
No 169
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.72 E-value=1.8e-07 Score=91.91 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=6.2
Q ss_pred CCCCccEEEeccC
Q 004225 90 EFPSLKELRISKC 102 (767)
Q Consensus 90 ~~~~L~~L~l~~c 102 (767)
.+++|++|+++++
T Consensus 57 ~l~~L~~L~L~~n 69 (251)
T 3m19_A 57 GLTKLTWLNLDYN 69 (251)
T ss_dssp TCTTCCEEECTTS
T ss_pred CcccCCEEECCCC
Confidence 3445555555443
No 170
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.69 E-value=6.5e-07 Score=90.41 Aligned_cols=275 Identities=13% Similarity=0.072 Sum_probs=163.2
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGA 439 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~ 439 (767)
++.+++.++++|...+.-..-++..++....+.+ =+++.+.+-+++++ +-++-.|.++|+++.. +..+. +
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i---Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~~m~~~-----l 140 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI---IVTSSLTKDMTGKE-DSYRGPAVRALCQITDSTMLQA-----I 140 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG---GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCCTTTHHH-----H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH---HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCCHHHHHH-----H
Confidence 7788899999999999999999988882222222 24788888899998 9999999999999987 54443 3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ 519 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 519 (767)
.+.+.+.+.+.++-|+..|+.+...+....|+.. .+.+..+-+++ .+.++-++.+|+.++..+...+
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d------- 207 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND------- 207 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-------
Confidence 5678889999999999999999999998777642 25888898999 8889999999999999998754
Q ss_pred hhchHHHHHHHhcCC---CHHHHHHHHHHHHhhccCC-hhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhc
Q 004225 520 VRPALPALAQLVHSN---DNDVLRYACEALSCLSDGT-NDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 520 ~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~ 595 (767)
..++..++.-+... ++-.+...++.+..++..+ +... ..+++.+...|++.++
T Consensus 208 -~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~-----~~~~~~l~~~L~~~~~----------------- 264 (355)
T 3tjz_B 208 -RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD-----SPLFDFIESCLRNKHE----------------- 264 (355)
T ss_dssp -HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSH-----------------
T ss_pred -hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHHcCCCh-----------------
Confidence 11444445444432 4666666677776666554 2211 2467778888888887
Q ss_pred cCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 004225 596 GDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKG 675 (767)
Q Consensus 596 ~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~ 675 (767)
.|..+|+.++..+...+... . ..++..+..++.++++.+|..|...|..++.. .|+..+.
T Consensus 265 ---------aVvyEa~k~I~~l~~~~~~~----~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~-~P~~v~~----- 324 (355)
T 3tjz_B 265 ---------MVVYEAASAIVNLPGCSAKE----L-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK-HPSAVTA----- 324 (355)
T ss_dssp ---------HHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------
T ss_pred ---------HHHHHHHHHHHhccCCCHHH----H-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-CcHHHHH-----
Confidence 56666666666654421111 1 23566777888899999999999999988875 4444332
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLE 700 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~ 700 (767)
.-.-+.+++.++|..+..-|+..|.
T Consensus 325 ~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 325 CNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp -------------------------
T ss_pred HHHHHHHHccCCcHhHHHHHHHHhh
Confidence 3445677888888777666655543
No 171
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.61 E-value=3.8e-07 Score=99.81 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=25.5
Q ss_pred CccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 65 PQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 65 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
++|++|+++++ +++.+| ..+++|+.|++++|. ++.. +. +. .+|++|++++|.
T Consensus 80 ~~L~~L~Ls~N-~l~~ip------~~l~~L~~L~Ls~N~-l~~i-p~-l~----~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 80 PQITVLEITQN-ALISLP------ELPASLEYLDACDNR-LSTL-PE-LP----ASLKHLDVDNNQ 131 (571)
T ss_dssp TTCSEEECCSS-CCSCCC------CCCTTCCEEECCSSC-CSCC-CC-CC----TTCCEEECCSSC
T ss_pred CCCCEEECcCC-CCcccc------cccCCCCEEEccCCC-CCCc-ch-hh----cCCCEEECCCCc
Confidence 55666666654 244443 124566666666653 2221 11 21 156666666553
No 172
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.58 E-value=1.1e-05 Score=70.03 Aligned_cols=215 Identities=13% Similarity=0.150 Sum_probs=164.7
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChhH
Q 004225 478 SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTNDK 556 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~ 556 (767)
+..++..++.+| ++.-..++.+|+..+.+++..- .......+.-|+.+++ +...........+++.++...++.
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~----~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTR----EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTC----GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHh----HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 445788899999 7777889999999999999764 3345566667777765 556777788899999999888776
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHH
Q 004225 557 IQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGP 636 (767)
Q Consensus 557 ~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~ 636 (767)
+.. ++|.+..-..-.++ .++....+++..|+..+|..... ++.-
T Consensus 105 v~~-----vVp~lfanyrigd~--------------------------kikIn~~yaLeeIaranP~l~~~-----v~rd 148 (253)
T 2db0_A 105 VKS-----MIPVLFANYRIGDE--------------------------KTKINVSYALEEIAKANPMLMAS-----IVRD 148 (253)
T ss_dssp HHH-----HHHHHHHHSCCCSH--------------------------HHHHHHHHHHHHHHHHCHHHHHH-----HHHH
T ss_pred HHh-----hHHHHHHHHhcCCc--------------------------cceecHHHHHHHHHHhChHHHHH-----HHHH
Confidence 653 67888877777777 78888888888888877776664 5667
Q ss_pred HHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCcc
Q 004225 637 LVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTAN 716 (767)
Q Consensus 637 L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~ 716 (767)
+..++.+++..-|..|...++.+... ..+.... +++.|+.++.++|.-+|..|..+|.+++...+
T Consensus 149 i~smltskd~~Dkl~aLnFi~alGen-~~~yv~P-----fLprL~aLL~D~deiVRaSaVEtL~~lA~~np--------- 213 (253)
T 2db0_A 149 FMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNP-----FLPRIINLLHDGDEIVRASAVEALVHLATLND--------- 213 (253)
T ss_dssp HHHHTSCSSHHHHHHHHHHHHTCCTT-THHHHGG-----GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH---------
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhcc-CccccCc-----chHHHHHHHcCcchhhhHHHHHHHHHHHHcCH---------
Confidence 88899988877788777777777665 3454443 78899999999999999999999999997432
Q ss_pred ccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 004225 717 RYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYW 758 (767)
Q Consensus 717 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 758 (767)
.++..+ .++ .+=+++.+..|++...+.+.++.
T Consensus 214 ----klRkii-----~~k-l~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 214 ----KLRKVV-----IKR-LEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp ----HHHHHH-----HHH-HHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHH-----HHH-HHHhcCcHHHHHHHHHHHHHHHH
Confidence 234443 233 33467888889999998888764
No 173
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.58 E-value=3.3e-06 Score=94.95 Aligned_cols=303 Identities=11% Similarity=0.023 Sum_probs=204.6
Q ss_pred HHHHHhhhc---CCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCC-------CHHHHHHHHHHHHHHHh-h
Q 004225 361 LPGMLAGVW---SDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTRED-------NPQLQLEAARALTNIAS-E 429 (767)
Q Consensus 361 i~~l~~~l~---s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~-------~~~~~~~a~~~L~~l~~-~ 429 (767)
+..+-+.+. ++++.++.-|+..|+.+....... ++..|.+.+.+++ .+.++..|+-.|+-+.. .
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 444555565 677888999999998877333222 3566777666443 26788888888887754 2
Q ss_pred hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhc
Q 004225 430 NTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFC 509 (767)
Q Consensus 430 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 509 (767)
.... +++.|.+++.+++..+++.|+.+++.+..++... .+++.+++.+.++.+..+++.++.+|+.+.
T Consensus 469 ~~ee-----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 469 ANIE-----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALIN 536 (963)
T ss_dssp CCHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred CCHH-----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 2222 4567888888777778888999999886544321 145677777656778899999999999887
Q ss_pred CCCCCCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhc--cCChhHHHHHHhcCcHHHHHHHh-cCCCCCCcccch
Q 004225 510 QGKPEPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLS--DGTNDKIQAVIEADVCPRLVKLL-LHPLPFPFGLTP 585 (767)
Q Consensus 510 ~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~~~v~~~ 585 (767)
.+.+ ..++.++..+. +.++-+|..++.+++--. .++...++ .|+..+ .+.+. +++..
T Consensus 537 ~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq---------~LL~~~~~d~~d--~VRra 597 (963)
T 4ady_A 537 YGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK---------RLLHVAVSDSND--DVRRA 597 (963)
T ss_dssp TTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHH---------HHHHHHHHCSCH--HHHHH
T ss_pred CCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHH---------HHHHHhccCCcH--HHHHH
Confidence 6542 35566666665 567888888777765333 34433333 233333 45555 88999
Q ss_pred HHHHHhhhhccCCcceeeh----------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHH
Q 004225 586 PLWTVRYIVKGDGFLTQCT----------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARA 655 (767)
Q Consensus 586 a~~~L~~l~~~~~~~~~~l----------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 655 (767)
|.-+|+.+..++++....+ .+|..|+++++.+..+++.. .++..|..+..+.+..|++.|+.+
T Consensus 598 AViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 598 AVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHH
Confidence 9999999876665432222 88999999999998865421 256778888889999999999999
Q ss_pred HHHhhcCCCHH---HHHHHHHcCChHHHHhhhc--CCCHHHHHHHHHHHHHHHHhhhhhhc
Q 004225 656 ISNAISGGTHE---QIKYLVRKGCIKPLCDLLL--YADPEIVTICLKGLENILKVGEAEMN 711 (767)
Q Consensus 656 L~nl~~~~~~~---~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~aL~~l~~~~~~~~~ 711 (767)
|+.+..+.+.. .+.. +.+.|..... +.++..+..+.-|..-+-.++.+-..
T Consensus 671 LG~Ig~gtnna~~~rva~-----~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~ti 726 (963)
T 4ady_A 671 LSMILIQQTEKLNPQVAD-----INKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTI 726 (963)
T ss_dssp HHHHSTTCCTTTCTTHHH-----HHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEE
T ss_pred HHHHhcCCccccchHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEE
Confidence 99998764322 2222 3444556664 35777888888887777665555433
No 174
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.54 E-value=3.3e-07 Score=87.08 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=90.7
Q ss_pred cCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccCCCCccEEEeccCCccccccc
Q 004225 31 FVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTT 110 (767)
Q Consensus 31 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 110 (767)
.++|++|+++++. +..+. +..+..+++|++|++.++ +++.++... ...+++|++|+++++. +....+
T Consensus 27 ~~~l~~L~l~~n~-l~~~~--------~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n~-l~~~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLP--------NGVFDELTSLTQLYLGGN-KLQSLPNGV--FNKLTSLTYLNLSTNQ-LQSLPN 93 (208)
T ss_dssp CTTCSEEECCSSC-CCCCC--------TTTTTTCTTCSEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSC-CCCCCT
T ss_pred CCCCcEEEcCCCc-cCcCC--------hhhhcccccCcEEECCCC-ccCccChhh--cCCCCCcCEEECCCCc-CCccCH
Confidence 4568888887764 44331 122455778888888775 455555432 2457888888888764 333332
Q ss_pred ccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccc
Q 004225 111 SIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEH 190 (767)
Q Consensus 111 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~ 190 (767)
..+ ..+++|++|+++++..... + ...+..+++|+.|.++++.. +.
T Consensus 94 ~~~--~~l~~L~~L~L~~N~l~~~-~-----------~~~~~~l~~L~~L~l~~N~l---------------------~~ 138 (208)
T 2o6s_A 94 GVF--DKLTQLKELALNTNQLQSL-P-----------DGVFDKLTQLKDLRLYQNQL---------------------KS 138 (208)
T ss_dssp TTT--TTCTTCCEEECCSSCCCCC-C-----------TTTTTTCTTCCEEECCSSCC---------------------SC
T ss_pred hHh--cCccCCCEEEcCCCcCccc-C-----------HhHhccCCcCCEEECCCCcc---------------------ce
Confidence 223 3678888888887653211 1 11245667788887776542 11
Q ss_pred hhhccccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhc
Q 004225 191 ILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVL 241 (767)
Q Consensus 191 ~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 241 (767)
+.......+++|++|++.+.+.. ..+++|++|.++.+...+.++
T Consensus 139 ~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 139 VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBB
T ss_pred eCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceee
Confidence 11111233577888888776321 345677888777765554544
No 175
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.54 E-value=6.2e-06 Score=92.75 Aligned_cols=281 Identities=13% Similarity=0.072 Sum_probs=189.6
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhcc---CCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhC
Q 004225 372 DSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLT---REDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLS 448 (767)
Q Consensus 372 ~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~ 448 (767)
..-.+..|+..|+-+-.++. .+++..|-+++. +++ +.++.-|+.+|+-+.....+. ++..|...+.
T Consensus 371 ~~~~k~sA~aSLGlIh~g~~-----~~gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~ 439 (963)
T 4ady_A 371 QNWAKFTATASLGVIHKGNL-----LEGKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIV 439 (963)
T ss_dssp CTHHHHHHHHHHHHHTSSCT-----TTHHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHH
T ss_pred chHHHHHHHHHhhhhccCch-----HHHHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHc
Confidence 33445666666666552222 134677777776 445 899999999999888722221 4667777776
Q ss_pred CCC--------HHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccch
Q 004225 449 SPS--------DDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQV 520 (767)
Q Consensus 449 ~~~--------~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 520 (767)
+++ +.++..|+..||-+..++.. . .+++.|..++ .+.+..+++.++.+++.+-.+..+
T Consensus 440 ~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--e-----ev~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------ 505 (963)
T 4ady_A 440 ENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--I-----EVYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------ 505 (963)
T ss_dssp HHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--H-----HHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------
T ss_pred CccccccccccHHHHHHHHHHHHHHhcCCCC--H-----HHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------
Confidence 644 67888999999998755432 1 2467788888 556667778899999987554311
Q ss_pred hchHHHHHHHh-cCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhc-CCCCCCcccchHHHHHh--hhhcc
Q 004225 521 RPALPALAQLV-HSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLL-HPLPFPFGLTPPLWTVR--YIVKG 596 (767)
Q Consensus 521 ~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~~v~~~a~~~L~--~l~~~ 596 (767)
..++..|+..+ ...+..+++.++.+|+.+..+.++... .+++.|. +.++ .++..|+.+++ +...+
T Consensus 506 ~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~---------~li~~L~~~~dp--~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 506 PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELAD---------DLITKMLASDES--LLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGH---------HHHHHHHHCSCH--HHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHH---------HHHHHHHhCCCH--HHHHHHHHHHHHHhcCCC
Confidence 23555555544 355789999999999998877665444 3444444 3444 66666655544 22233
Q ss_pred CCcceeeh----------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHH-HhcCCchhHHHHHHHHHHhhcCCCH
Q 004225 597 DGFLTQCT----------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDL-LQNAEFFTKKEAARAISNAISGGTH 665 (767)
Q Consensus 597 ~~~~~~~l----------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~nl~~~~~~ 665 (767)
+....+.+ .+|+.|+.+|+.+..+.+ ..++.++.. +++.++.+|..|+++|+.+..+. +
T Consensus 575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn-~ 644 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK-G 644 (963)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS-C
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-C
Confidence 33323211 688889999998776643 346667764 45778999999999999998763 2
Q ss_pred HHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 666 EQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 666 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
. . .+++.|..+.++.+..|+..|+.+|..+...
T Consensus 645 ~--~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 645 L--Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp C--H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred c--H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 2 1 1466788889999999999999999998864
No 176
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.54 E-value=1.2e-06 Score=79.71 Aligned_cols=224 Identities=17% Similarity=0.130 Sum_probs=168.2
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHH
Q 004225 480 KALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQ 558 (767)
Q Consensus 480 g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 558 (767)
+.+..+..++ .+.|+.++..++.++..+...- ...........++.++.++.+.|+.+...|++++..+..+.+-...
T Consensus 33 ~~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3678888999 8999999999999999988664 2335566788999999999999999999999999999988664444
Q ss_pred HHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHH
Q 004225 559 AVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLV 638 (767)
Q Consensus 559 ~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~ 638 (767)
.+.. +...+..++.++++ -.+.+|+..++.+-..+. ..+++..+.
T Consensus 112 ~y~K--l~~aL~dlik~~~~--------------------------il~~eaae~Lgklkv~~~-------~~~V~~~l~ 156 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDD--------------------------MMRIETIDVLSKLQPLED-------SKLVRTYIN 156 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCH--------------------------HHHHHHHHHHHHCCBSCC-------CHHHHHHHH
T ss_pred HHHH--HHHHHHHHhcCCCc--------------------------hHHHHHHHHhCcCCcccc-------hHHHHHHHH
Confidence 4433 67889999998887 566677777766522110 013567888
Q ss_pred HHHhcCCchhHHHHHHHHHHhhcCC-CHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccc
Q 004225 639 DLLQNAEFFTKKEAARAISNAISGG-THEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANR 717 (767)
Q Consensus 639 ~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~ 717 (767)
.++.+.+..+|..+..++.+++... +++. -.+++.-+-+++++.|+.+++.|+.++..++...-. ++
T Consensus 157 sLl~Skd~~vK~agl~~L~eia~~S~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~----~~--- 224 (265)
T 3b2a_A 157 ELVVSPDLYTKVAGFCLFLNMLNSSADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL----EN--- 224 (265)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHGGGCSSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC----SC---
T ss_pred HHHhCCChhHHHHHHHHHHHhhcccCCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc----Hh---
Confidence 8999999999999999999998742 2222 134777788899999999999999999999874211 10
Q ss_pred cccHHHHHHHhhchHHHHHHHh-cCCChHHHHHHHHHHHHh
Q 004225 718 YFNHYARLVEAAEGFKKIEDLK-RHDSNGICEKAVKILEIY 757 (767)
Q Consensus 718 ~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~~~ 757 (767)
....+ .+.......+. ....|.++.+|..+-+.+
T Consensus 225 ~~~~~------~~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 225 VKIEL------LKISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CHHHH------HHHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 11112 23345566677 677899999998877653
No 177
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.53 E-value=1.4e-07 Score=93.27 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=33.7
Q ss_pred ccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEcccc
Q 004225 198 VTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCD 261 (767)
Q Consensus 198 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 261 (767)
.+++|++|+++++. ++.+ +....+++|+.|+++++. ++++ ..+..+++|+.|++++++
T Consensus 126 ~l~~L~~L~Ls~N~-i~~~-~~l~~l~~L~~L~L~~N~-i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 126 HLKNLEILSIRNNK-LKSI-VMLGFLSKLEVLDLHGNE-ITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCTTCCEEECTTSC-CCBC-GGGGGCTTCCEEECTTSC-CCBC---TTSTTCCCCCEEEEEEEE
T ss_pred CcccccEEECCCCc-CCCC-hHHccCCCCCEEECCCCc-Ccch---HHhccCCCCCEEeCCCCc
Confidence 34666777776543 3332 234566777777777653 3333 123457777777777655
No 178
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.52 E-value=5.6e-07 Score=87.70 Aligned_cols=187 Identities=17% Similarity=0.240 Sum_probs=139.2
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChhHHHHHH
Q 004225 483 IPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTNDKIQAVI 561 (767)
Q Consensus 483 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 561 (767)
+.+.+.+ ++.+...|+.++..|..+....+.........+++.+...+. +.+..++..++.++..++..-........
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3467777 889999999999999999876322222234678899999995 99999999999999999954333222222
Q ss_pred hcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHH
Q 004225 562 EADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLL 641 (767)
Q Consensus 562 ~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll 641 (767)
..++|.++..+.+.+. .++..|..++.+++.... .. .+++.+...+
T Consensus 97 -~~ilp~ll~~l~d~~~--------------------------~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l 142 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKP--------------------------NVVTALREAIDAIYASTS--LE-----AQQESIVESL 142 (242)
T ss_dssp -HHHHHHHHHGGGCCCH--------------------------HHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHT
T ss_pred -HHHHHHHHHHHcCCCH--------------------------HHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHH
Confidence 2488999999999888 566666666665555321 11 2577888999
Q ss_pred hcCCchhHHHHHHHHHHhhcCCCHHH--HHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 642 QNAEFFTKKEAARAISNAISGGTHEQ--IKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 642 ~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
++.++.+|..++..|..+.....++. ..++ . .+++.|..++.+.++++|..|..++..++...
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLL-K-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-H-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-H-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 99999999999999999765433331 1222 2 47899999999999999999999999998754
No 179
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.51 E-value=1.9e-07 Score=85.22 Aligned_cols=10 Identities=40% Similarity=0.584 Sum_probs=4.1
Q ss_pred ccccEEEecC
Q 004225 200 NNLVILRVKG 209 (767)
Q Consensus 200 ~~L~~L~i~~ 209 (767)
++|++|++++
T Consensus 95 ~~L~~L~Ls~ 104 (168)
T 2ell_A 95 PNLTHLNLSG 104 (168)
T ss_dssp TTCCEEECBS
T ss_pred CCCCEEeccC
Confidence 3444444433
No 180
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.50 E-value=2.1e-06 Score=78.14 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=142.3
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcc
Q 004225 521 RPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFL 600 (767)
Q Consensus 521 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~ 600 (767)
.+.+..+..++.+.|+.++.+++.++..+....+.......-..+++.++.++.+.+. .+...|++++..+..+.+-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dE--kval~A~r~L~~LLe~vpL- 108 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENE--KVTIKALRALGYLVKDVPM- 108 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTH--HHHHHHHHHHHHHHTTCCB-
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHHHHcCCCC-
Confidence 3578889999999999999999999999986644333333333689999999999998 7777777777666544331
Q ss_pred eeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 004225 601 TQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPL 680 (767)
Q Consensus 601 ~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L 680 (767)
+++.... ++..+..++.+++.-++.+|+-.++-+-.-.... +++..+
T Consensus 109 --------------------~~~~y~K-----l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~--------~V~~~l 155 (265)
T 3b2a_A 109 --------------------GSKTFLK-----AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK--------LVRTYI 155 (265)
T ss_dssp --------------------CHHHHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH--------HHHHHH
T ss_pred --------------------CHHHHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH--------HHHHHH
Confidence 1222222 4567888889999999999999999983321111 256778
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 004225 681 CDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSC 760 (767)
Q Consensus 681 ~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 760 (767)
.+++++.|++++.+|+.++.++....++... -.+.++-+..++.++|+.++++|..+++.++.-
T Consensus 156 ~sLl~Skd~~vK~agl~~L~eia~~S~D~~i----------------~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 156 NELVVSPDLYTKVAGFCLFLNMLNSSADSGH----------------LTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC----------------GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCChhHHHHHHHHHHHhhcccCCHHH----------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999999975443221 233456678888999999999999999999875
Q ss_pred Cc
Q 004225 761 GV 762 (767)
Q Consensus 761 ~~ 762 (767)
..
T Consensus 220 pi 221 (265)
T 3b2a_A 220 PL 221 (265)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 181
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.48 E-value=3.2e-06 Score=85.39 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=40.2
Q ss_pred CCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 004225 632 GVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMN 711 (767)
Q Consensus 632 ~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~ 711 (767)
.+++.+...+++.++.|..+|+.++..+... +... . ..++..|..++.++++.++-.|+..|..+....+.
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~~----~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~--- 320 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAKE----L-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS--- 320 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC------------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHHH----H-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---
Confidence 4667777888899999999999999987552 1111 1 23677888889999999999999999999874322
Q ss_pred cCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHH
Q 004225 712 TGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKIL 754 (767)
Q Consensus 712 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l 754 (767)
.+.. .-..+++++.++|..+.-.|+..|
T Consensus 321 -------------~v~~--~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 321 -------------AVTA--CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -------------------------------------------
T ss_pred -------------HHHH--HHHHHHHHccCCcHhHHHHHHHHh
Confidence 2211 234567788999998887776654
No 182
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.46 E-value=2.7e-07 Score=84.29 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=26.4
Q ss_pred ccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccc
Q 004225 198 VTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSC 260 (767)
Q Consensus 198 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 260 (767)
.+++|++|+++++. +..+ .....+++|++|++++|.-...+ +. .+..+++|++|++++|
T Consensus 47 ~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~-~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 47 EFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGL-DM-LAEKLPNLTHLNLSGN 105 (168)
T ss_dssp GGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCC-CH-HHHHCTTCCEEECBSS
T ss_pred hCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHH-HH-HHhhCCCCCEEeccCC
Confidence 34555555555543 2222 33444555555555554322211 11 1233555555555554
No 183
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.46 E-value=1.2e-06 Score=85.35 Aligned_cols=180 Identities=17% Similarity=0.162 Sum_probs=138.3
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhcc-CCCCHHHHHHHHHHHHHHHh---hhhHHHHh
Q 004225 363 GMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLT-REDNPQLQLEAARALTNIAS---ENTNVVID 436 (767)
Q Consensus 363 ~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~---~~~~~~~~ 436 (767)
.+.+.+.+.++..+..|+..|..++ .+....-.-..+++.|...+. +.+ ..++..|+.++..++. ......+
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~~- 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNYA- 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 4777888999999999999999988 222100001245777888884 777 9999999999999998 2111211
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC-CC-
Q 004225 437 GGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK-PE- 514 (767)
Q Consensus 437 ~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~- 514 (767)
..++|.++..+.+.++.+|..|..++..++...+ .. .+++.+...+ ++.++.++..++..+..+.... +.
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESL-SNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 2478999999999999999999999999986533 21 2567788888 7889999999999999965443 32
Q ss_pred CCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 515 PPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 515 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
........++|.+..++.+.+.++|..|..++..++..
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 22344568999999999999999999999999988743
No 184
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.43 E-value=2.4e-07 Score=91.52 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=15.5
Q ss_pred CcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccc
Q 004225 221 TSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSC 260 (767)
Q Consensus 221 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 260 (767)
..+++|+.|+++++. +++++ .+..+++|++|+++++
T Consensus 125 ~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 125 IHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp TTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEEECTTS
T ss_pred cCcccccEEECCCCc-CCCCh---HHccCCCCCEEECCCC
Confidence 344455555554442 23321 1233455555555444
No 185
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.43 E-value=2.4e-06 Score=93.56 Aligned_cols=183 Identities=15% Similarity=0.182 Sum_probs=105.7
Q ss_pred ccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhc
Q 004225 66 QLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTIL 145 (767)
Q Consensus 66 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 145 (767)
+|+.|++.++ +++.+|.. -+++|+.|+++++. ++. ++ ..+++|++|++++|.... ++.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~-----l~~~L~~L~Ls~N~-l~~-----ip-~~l~~L~~L~Ls~N~l~~-ip~-------- 117 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN-----LPPQITVLEITQNA-LIS-----LP-ELPASLEYLDACDNRLST-LPE-------- 117 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC-----CCTTCSEEECCSSC-CSC-----CC-CCCTTCCEEECCSSCCSC-CCC--------
T ss_pred CccEEEeCCC-CCCccCHh-----HcCCCCEEECcCCC-Ccc-----cc-cccCCCCEEEccCCCCCC-cch--------
Confidence 7888888876 46666542 25789999998874 332 22 356888999888875321 111
Q ss_pred chhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCCCcCCC
Q 004225 146 SLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPSTSFQN 225 (767)
Q Consensus 146 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~ 225 (767)
+.. +|+.|.++++. +..+ +. .+++|++|+++++. ++.++. .+++
T Consensus 118 -----l~~--~L~~L~Ls~N~---------------------l~~l--p~--~l~~L~~L~Ls~N~-l~~lp~---~l~~ 161 (571)
T 3cvr_A 118 -----LPA--SLKHLDVDNNQ---------------------LTML--PE--LPALLEYINADNNQ-LTMLPE---LPTS 161 (571)
T ss_dssp -----CCT--TCCEEECCSSC---------------------CSCC--CC--CCTTCCEEECCSSC-CSCCCC---CCTT
T ss_pred -----hhc--CCCEEECCCCc---------------------CCCC--CC--cCccccEEeCCCCc-cCcCCC---cCCC
Confidence 011 55666665543 2222 11 35777888877654 333332 4677
Q ss_pred CCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCCCccc
Q 004225 226 LTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSGNCAF 305 (767)
Q Consensus 226 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 305 (767)
|++|++++|. ++.++. + . ++|++|+++++. ++.++. ... . -....+.|+.|+++++ .++.++.. ..
T Consensus 162 L~~L~Ls~N~-L~~lp~--l-~--~~L~~L~Ls~N~-L~~lp~-~~~-~--L~~~~~~L~~L~Ls~N-~l~~lp~~--l~ 227 (571)
T 3cvr_A 162 LEVLSVRNNQ-LTFLPE--L-P--ESLEALDVSTNL-LESLPA-VPV-R--NHHSEETEIFFRCREN-RITHIPEN--IL 227 (571)
T ss_dssp CCEEECCSSC-CSCCCC--C-C--TTCCEEECCSSC-CSSCCC-CC-----------CCEEEECCSS-CCCCCCGG--GG
T ss_pred cCEEECCCCC-CCCcch--h-h--CCCCEEECcCCC-CCchhh-HHH-h--hhcccccceEEecCCC-cceecCHH--Hh
Confidence 8888887764 444443 2 1 778888887764 555544 210 0 0000123377888775 56666642 34
Q ss_pred cCCccceEeecCCCC
Q 004225 306 KFPSLERLVVDDCPD 320 (767)
Q Consensus 306 ~~~~L~~L~i~~c~~ 320 (767)
.+++|++|++.+++-
T Consensus 228 ~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 228 SLDPTCTIILEDNPL 242 (571)
T ss_dssp GSCTTEEEECCSSSC
T ss_pred cCCCCCEEEeeCCcC
Confidence 578888888887753
No 186
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.43 E-value=2.4e-07 Score=82.61 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=15.6
Q ss_pred CCccceeecccccccc--cccCCCCcccCCCCccEEEeccC
Q 004225 64 FPQLQYLKMSDLEKFT--SFCTGDLDILEFPSLKELRISKC 102 (767)
Q Consensus 64 ~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~L~~L~l~~c 102 (767)
+++|++|++.++. +. .++.. ...+++|+.|++++|
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~---~~~l~~L~~L~l~~n 52 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGL---TDEFEELEFLSTINV 52 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSC---CTTCTTCCEEECTTS
T ss_pred CccCeEEEccCCc-CChhHHHHH---HhhcCCCcEEECcCC
Confidence 3455555555543 22 22221 233455555555544
No 187
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.42 E-value=1.1e-06 Score=83.33 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=36.3
Q ss_pred CCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 64 FPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
+++|++|+++++ .++.++... ...+++|++|+++++. +....+..+ ..+++|++|++++|.
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGV--FDELTSLTQLYLGGNK-LQSLPNGVF--NKLTSLTYLNLSTNQ 87 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSC
T ss_pred CCCCcEEEcCCC-ccCcCChhh--hcccccCcEEECCCCc-cCccChhhc--CCCCCcCEEECCCCc
Confidence 457788887775 355554332 2457778888877763 333332223 256777777777664
No 188
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=6.7e-07 Score=91.71 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=59.0
Q ss_pred CCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccc-eEeecCCCCcccccCC
Q 004225 223 FQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELK-ELKLVDLERLTSFCSG 301 (767)
Q Consensus 223 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~ 301 (767)
+++|++|+|.++. ++.++.. .+.++++|++|++.+. ++.++...... +++|+ .+.+.+ +++.+..+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~-aF~~~~~L~~l~l~~n--i~~I~~~aF~~-------~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDF-TFAQKKYLLKIKLPHN--LKTIGQRVFSN-------CGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTT-TTTTCTTCCEEECCTT--CCEECTTTTTT-------CTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCCC-cceecHh-hhhCCCCCCEEECCcc--cceehHHHhhC-------ChhccEEEEEcc--cceEEchh
Confidence 5778888887643 5555433 3566778888887653 55555443221 56777 777766 67777643
Q ss_pred CccccCCccceEeecCCCCcccccccCC-CCcccchh
Q 004225 302 NCAFKFPSLERLVVDDCPDMKIFSEGKL-STPKLHKV 337 (767)
Q Consensus 302 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~-~~~~L~~l 337 (767)
....|++|+.|.+.+. +++.++.... ..++|+.+
T Consensus 292 -aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 292 -AFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp -TTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEE
T ss_pred -hhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhh
Confidence 3456778888876543 4555544322 23345544
No 189
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.39 E-value=2.9e-07 Score=82.13 Aligned_cols=127 Identities=13% Similarity=0.139 Sum_probs=70.7
Q ss_pred cccccEEEecCCCcc-ccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccc
Q 004225 199 TNNLVILRVKGCDHL-VNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDE 277 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 277 (767)
+++|++|+++++... ..++.....+++|++|++++| .++.+ ..+..+++|++|++++|.--..++.....
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~----- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEK----- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHH-----
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhh-----
Confidence 466777777776533 244444466777777777776 34443 22355777777777776522223322222
Q ss_pred cccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccc----cCCCCcccchhhc
Q 004225 278 VITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSE----GKLSTPKLHKVER 339 (767)
Q Consensus 278 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~----~~~~~~~L~~l~i 339 (767)
+++|+.|+++++. ++.++.-.....+|+|++|++++| .+...|. .....++|+.+++
T Consensus 87 ---l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 87 ---CPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ---CTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ---CCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 6777777777764 444431112345777777777777 4444443 1222345555544
No 190
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.38 E-value=2.8e-06 Score=81.18 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=14.8
Q ss_pred ccEEeeecCCCccccccCccccCcCCCceeeeecc
Q 004225 8 LTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGC 42 (767)
Q Consensus 8 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~ 42 (767)
+++|+++++. +..+++...+..+++|++|+++++
T Consensus 34 ~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N 67 (220)
T 2v70_A 34 TAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN 67 (220)
T ss_dssp CSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS
T ss_pred CCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC
Confidence 4445554432 333333333344455555555444
No 191
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=2.9e-07 Score=82.62 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=53.8
Q ss_pred ccccEEEecCCCccccc-cCCCCcCCCCCEEEeccCccchhhcCchhhhc---cccCcEEeEccccccchhccccccccc
Q 004225 200 NNLVILRVKGCDHLVNL-VPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKT---LVRLRYMKIKSCDRITEIVQGDDVVAK 275 (767)
Q Consensus 200 ~~L~~L~i~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~---l~~L~~L~i~~c~~l~~~~~~~~~~~~ 275 (767)
.+|++|++++|. +++. ...+..+++|++|+|++|..+++.....+... .++|++|++++|+.+++.......
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~--- 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH--- 136 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG---
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh---
Confidence 467888888776 4321 22245677888888888877777644333321 346777777777766654332211
Q ss_pred cccccccccceEeecCCCCcccc
Q 004225 276 DEVITFRELKELKLVDLERLTSF 298 (767)
Q Consensus 276 ~~~~~~~~L~~L~l~~~~~l~~~ 298 (767)
.+++|++|.+++|+++++.
T Consensus 137 ----~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 137 ----HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ----GCTTCCEEEEESCTTCCCH
T ss_pred ----cCCCCCEEECCCCCCCCch
Confidence 1566666666666666553
No 192
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.37 E-value=2.9e-06 Score=81.77 Aligned_cols=109 Identities=22% Similarity=0.214 Sum_probs=60.8
Q ss_pred cccccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccc
Q 004225 197 SVTNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAK 275 (767)
Q Consensus 197 ~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 275 (767)
..+++|++|+++++. +..++.. ...+++|+.|+++++ .++.++... +..+++|++|+++++. ++.++.....
T Consensus 61 ~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~--- 133 (229)
T 3e6j_A 61 DSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAV-FDRLVHLKELFMCCNK-LTELPRGIER--- 133 (229)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCSCCTTGGG---
T ss_pred hCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhH-hCcchhhCeEeccCCc-ccccCccccc---
Confidence 345667777776644 3333332 345667777777665 344443322 3456677777776654 4455443333
Q ss_pred cccccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 276 DEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 276 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
+++|+.|++++. +++.++.. ....+++|++|++.+.+
T Consensus 134 -----l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 134 -----LTHLTHLALDQN-QLKSIPHG-AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp -----CTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECTTSC
T ss_pred -----CCCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCCC
Confidence 667777777664 45555432 22356677777776654
No 193
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.34 E-value=4.1e-06 Score=80.09 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=51.6
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
+|++|+++++. +..+++ ..+..+++|++|+++++. +..+. +..+..+++|++|+++++ .++.++...
T Consensus 33 ~l~~L~l~~n~-i~~i~~-~~~~~l~~L~~L~Ls~N~-i~~~~--------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~- 99 (220)
T 2v9t_B 33 TITEIRLEQNT-IKVIPP-GAFSPYKKLRRIDLSNNQ-ISELA--------PDAFQGLRSLNSLVLYGN-KITELPKSL- 99 (220)
T ss_dssp TCCEEECCSSC-CCEECT-TSSTTCTTCCEEECCSSC-CCEEC--------TTTTTTCSSCCEEECCSS-CCCCCCTTT-
T ss_pred CCCEEECCCCc-CCCcCH-hHhhCCCCCCEEECCCCc-CCCcC--------HHHhhCCcCCCEEECCCC-cCCccCHhH-
Confidence 56666666643 444422 223455666666666553 33321 123444566666666554 244444322
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
...+++|+.|+++++. +....+..+ ..+++|+.|++++|.
T Consensus 100 -f~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 100 -FEGLFSLQLLLLNANK-INCLRVDAF--QDLHNLNLLSLYDNK 139 (220)
T ss_dssp -TTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSC
T ss_pred -ccCCCCCCEEECCCCC-CCEeCHHHc--CCCCCCCEEECCCCc
Confidence 2345566666666553 222222222 245666666666554
No 194
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.33 E-value=7.9e-08 Score=83.50 Aligned_cols=122 Identities=19% Similarity=0.268 Sum_probs=84.2
Q ss_pred hcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 004225 396 QSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDL 475 (767)
Q Consensus 396 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 475 (767)
....++.++.++++++ +.+|..|+++|.++.. ..++.|+.+|+++++.+|..|+++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~---------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADEN-KWVRRDVSTALSRMGD---------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp -----------CCSSC-CCSSSSCCSSTTSCSS---------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc---------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 3456777888888777 7788888877765532 236888888888888888888888887762
Q ss_pred HHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 004225 476 VLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCL 549 (767)
Q Consensus 476 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 549 (767)
..+++.++..+ .++++.++..++++|+++.. ..+++.|..++++++..++..++++|..+
T Consensus 72 ---~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 11467788888 67888888888888888752 35778888888888888888888887653
No 195
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.29 E-value=2.4e-06 Score=88.74 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=67.5
Q ss_pred cEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccC-CCCccceeecccccccccccCCCCc
Q 004225 9 TRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIV-MFPQLQYLKMSDLEKFTSFCTGDLD 87 (767)
Q Consensus 9 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~ 87 (767)
+++++.+. .++.+|. . -...+++|+++++. +..+.. .... .+++|++|+++++ +++.++...
T Consensus 21 ~~l~c~~~-~l~~iP~-~---~~~~l~~L~Ls~N~-l~~l~~--------~~~~~~l~~L~~L~L~~N-~i~~i~~~~-- 83 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQ-S---LPSYTALLDLSHNN-LSRLRA--------EWTPTRLTNLHSLLLSHN-HLNFISSEA-- 83 (361)
T ss_dssp TEEECCSS-CCSSCCS-S---CCTTCSEEECCSSC-CCEECT--------TSSSSCCTTCCEEECCSS-CCCEECTTT--
T ss_pred CEEEeCCC-CcCccCc-c---CCCCCCEEECCCCC-CCccCh--------hhhhhcccccCEEECCCC-cCCccChhh--
Confidence 56666664 4666642 2 23458899998874 665521 1223 5789999999876 466665443
Q ss_pred ccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCccc
Q 004225 88 ILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHV 131 (767)
Q Consensus 88 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 131 (767)
...+++|++|+++++. +....+..+ ..+++|+.|++++|..
T Consensus 84 ~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNH-LHTLDEFLF--SDLQALEVLLLYNNHI 124 (361)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTTT--TTCTTCCEEECCSSCC
T ss_pred ccCCCCCCEEECCCCc-CCcCCHHHh--CCCcCCCEEECCCCcc
Confidence 4568899999998875 444443334 3688999999988763
No 196
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.28 E-value=6.4e-06 Score=79.97 Aligned_cols=195 Identities=8% Similarity=0.104 Sum_probs=134.8
Q ss_pred HHHHHccCCChHHHHHHHHHHHh-hcCCCCCCC--ccchhchHHHHHHHh-cCCCHHHHHHHHHHHHhhccCCh-hHHH-
Q 004225 485 LLAQLNKHAKPSMLRNATKTLSR-FCQGKPEPP--FDQVRPALPALAQLV-HSNDNDVLRYACEALSCLSDGTN-DKIQ- 558 (767)
Q Consensus 485 L~~ll~~~~~~~~~~~~~~~L~~-l~~~~~~~~--~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~-~~~~- 558 (767)
+.+.+ .+.+..-|..++..|.. ++.+.+... ......++..+...+ ++.+..++..++.++..++.+-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44566 78999999999999999 875533222 223356788888999 68899999999999999985432 2221
Q ss_pred HHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHH
Q 004225 559 AVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLV 638 (767)
Q Consensus 559 ~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~ 638 (767)
... ..++|.++..+.+... . ++..+..++..++...+.....-.-..+++.++
T Consensus 100 ~y~-~~llp~ll~~l~dkk~--~------------------------V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~ 152 (249)
T 2qk1_A 100 DYV-SLVFTPLLDRTKEKKP--S------------------------VIEAIRKALLTICKYYDPLASSGRNEDMLKDIL 152 (249)
T ss_dssp HHH-HHHHHHHHHGGGCCCH--H------------------------HHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHcCCCH--H------------------------HHHHHHHHHHHHHHHccccccCCcHHHHHHHHH
Confidence 121 1378999999998887 4 444444444443331100000000002567888
Q ss_pred HHHhcCCchhHHHHHHHHHHhhcCCCH--HHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 004225 639 DLLQNAEFFTKKEAARAISNAISGGTH--EQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 639 ~ll~~~~~~v~~~a~~~L~nl~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 707 (767)
..+++.++.+|..++.+|..++..... ......+...+++.|..++.+.++++|.+|..++..++...+
T Consensus 153 ~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 153 EHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999865321 333232325689999999999999999999999999987544
No 197
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.25 E-value=8.3e-06 Score=77.89 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=27.3
Q ss_pred cccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSC 260 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 260 (767)
+++|++|+++++......+.....+++|++|+++++. ++.+.+.. +..+++|++|++.++
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGA-FDTLHSLSTLNLLAN 163 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTT-TTTCTTCCEEECCSC
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHH-hcCCCCCCEEEecCc
Confidence 4556666665543222112223445556666665542 33332222 234555555555543
No 198
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.25 E-value=1.2e-05 Score=77.40 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=16.0
Q ss_pred CCCCccEEEeccCCcccccccccccccccCCCceeeeCCc
Q 004225 90 EFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAK 129 (767)
Q Consensus 90 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 129 (767)
.+++|++|+++++. +....+..+ ..+++|+.|++++|
T Consensus 62 ~l~~L~~L~L~~N~-l~~i~~~~~--~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 62 SLINLKELYLGSNQ-LGALPVGVF--DSLTQLTVLDLGTN 98 (229)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSS
T ss_pred CccCCcEEECCCCC-CCCcChhhc--ccCCCcCEEECCCC
Confidence 34555555555443 222221222 13455555555544
No 199
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=4.9e-07 Score=81.14 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=62.5
Q ss_pred CCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcccC----CCCccEEEeccCCcccc
Q 004225 32 VQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDILE----FPSLKELRISKCPEFMV 107 (767)
Q Consensus 32 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~ 107 (767)
.+|++|++++|. +.. .++ ..+..+++|++|++.+|+.+++..... +.. +++|++|++++|+.+++
T Consensus 61 ~~L~~LDLs~~~-Itd-------~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMS-------IGF-DHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCG-------GGG-GGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccH-------HHH-HHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCH
Confidence 358888888886 432 111 234568888888888888887765433 222 35788999999988887
Q ss_pred cccccccccccCCCceeeeCCcccccc
Q 004225 108 RTTSIFTERVFPNLEKLKVDAKHVVTN 134 (767)
Q Consensus 108 ~~~~~~~~~~l~~L~~L~l~~~~~~~~ 134 (767)
.....+ ..+++|++|++++|+.+++
T Consensus 130 ~Gl~~L--~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIAL--HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHG--GGCTTCCEEEEESCTTCCC
T ss_pred HHHHHH--hcCCCCCEEECCCCCCCCc
Confidence 654434 3678899999988887665
No 200
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.22 E-value=2.5e-07 Score=80.25 Aligned_cols=120 Identities=18% Similarity=0.149 Sum_probs=88.9
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCC
Q 004225 436 DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEP 515 (767)
Q Consensus 436 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 515 (767)
....++.++.+|+++++.+|..|+++|+.+... .++.|+..+ .++++.+|..++++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC-----
Confidence 345678899999999999999999999876421 258888999 78999999999999999874
Q ss_pred CccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHh
Q 004225 516 PFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVR 591 (767)
Q Consensus 516 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~ 591 (767)
..+++.|...+.++++.++..++++|.++.. ...++.|..++++++. .++..|.++|+
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~--~vr~~A~~aL~ 129 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTG--FARKVAVNYLE 129 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCT--HHHHHHHHHGG
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCH--HHHHHHHHHHH
Confidence 3578999999999999999999999999863 1256788999988888 55555555444
No 201
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.21 E-value=4.4e-06 Score=76.68 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=85.8
Q ss_pred CCCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC
Q 004225 4 GIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT 83 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (767)
.+++|++|++++|. +..++. .....++|++|+++++. +..+ ..+..+++|++|+++++. ++.++.
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~~--~~~~~~~L~~L~Ls~N~-l~~~----------~~l~~l~~L~~L~Ls~N~-l~~~~~ 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIEN--LGATLDQFDAIDFSDNE-IRKL----------DGFPLLRRLKTLLVNNNR-ICRIGE 81 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCCC--GGGGTTCCSEEECCSSC-CCEE----------CCCCCCSSCCEEECCSSC-CCEECS
T ss_pred CcCCceEEEeeCCC-CchhHH--hhhcCCCCCEEECCCCC-CCcc----------cccccCCCCCEEECCCCc-ccccCc
Confidence 46789999999984 565532 22334489999998884 6654 345668899999998864 565653
Q ss_pred CCCcccCCCCccEEEeccCCccccccc-ccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeee
Q 004225 84 GDLDILEFPSLKELRISKCPEFMVRTT-SIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQI 162 (767)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 162 (767)
.. ...+++|+.|++++|.. ..... ..+ ..+++|+.|++++|+.... +. .-...+..+++|+.|++
T Consensus 82 ~~--~~~l~~L~~L~L~~N~i-~~~~~~~~l--~~l~~L~~L~l~~N~i~~~-~~--------~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 82 GL--DQALPDLTELILTNNSL-VELGDLDPL--ASLKSLTYLCILRNPVTNK-KH--------YRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CH--HHHCTTCCEEECCSCCC-CCGGGGGGG--GGCTTCCEEECCSSGGGGS-TT--------HHHHHHHHCTTCSEETT
T ss_pred ch--hhcCCCCCEEECCCCcC-CcchhhHhh--hcCCCCCEEEecCCCCCCc-Hh--------HHHHHHHHCCccceeCC
Confidence 31 25688999999988753 32221 112 3688999999998764211 10 00123566777777766
Q ss_pred cCCC
Q 004225 163 GGYS 166 (767)
Q Consensus 163 ~~~~ 166 (767)
+++.
T Consensus 148 ~~n~ 151 (176)
T 1a9n_A 148 QKVK 151 (176)
T ss_dssp EECC
T ss_pred CcCC
Confidence 6543
No 202
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.18 E-value=5.6e-06 Score=85.97 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=88.5
Q ss_pred CCccceeecccccccccccCCCCccc-CCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcc
Q 004225 64 FPQLQYLKMSDLEKFTSFCTGDLDIL-EFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDER 142 (767)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 142 (767)
++.++.|++++. +++.++... .. .+++|+.|+++++. +....+..+ ..+++|++|++++|....- +
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~--~~~~l~~L~~L~L~~N~-i~~i~~~~~--~~l~~L~~L~Ls~N~l~~~-~------ 104 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEW--TPTRLTNLHSLLLSHNH-LNFISSEAF--VPVPNLRYLDLSSNHLHTL-D------ 104 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTS--SSSCCTTCCEEECCSSC-CCEECTTTT--TTCTTCCEEECCSSCCCEE-C------
T ss_pred CCCCCEEECCCC-CCCccChhh--hhhcccccCEEECCCCc-CCccChhhc--cCCCCCCEEECCCCcCCcC-C------
Confidence 456888888875 466665442 22 67888999888764 343333334 3678888888887753211 1
Q ss_pred hhcchhhHhhhccccceeeecCCCCCCCcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCCC--
Q 004225 143 TILSLGDFLQRLHTMKVLQIGGYSASLPYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPPS-- 220 (767)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~-- 220 (767)
...+..+++|+.|.++++. +..+.......+++|++|+++++. +..++...
T Consensus 105 -----~~~~~~l~~L~~L~L~~N~---------------------i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~ 157 (361)
T 2xot_A 105 -----EFLFSDLQALEVLLLYNNH---------------------IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIK 157 (361)
T ss_dssp -----TTTTTTCTTCCEEECCSSC---------------------CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC
T ss_pred -----HHHhCCCcCCCEEECCCCc---------------------ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhc
Confidence 1124455666666666543 222222223446778888887653 33333322
Q ss_pred --CcCCCCCEEEeccCccchhhcCchhhhcccc--CcEEeEcccc
Q 004225 221 --TSFQNLTNMVVSRCNNLKIVLTSLIAKTLVR--LRYMKIKSCD 261 (767)
Q Consensus 221 --~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~--L~~L~i~~c~ 261 (767)
..+++|+.|+|+++ .++.++... +..++. |+.|++.+++
T Consensus 158 ~~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSN-KLKKLPLTD-LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----CTTCCEEECCSS-CCCCCCHHH-HHHSCHHHHTTEECCSSC
T ss_pred CcccCCcCCEEECCCC-CCCccCHHH-hhhccHhhcceEEecCCC
Confidence 45778888888775 344443322 344555 3667776543
No 203
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.15 E-value=0.00012 Score=75.50 Aligned_cols=322 Identities=12% Similarity=0.106 Sum_probs=177.4
Q ss_pred CchHHHHhhccCCCCHHHHHHHHHHHHHHHh-h----hhHHH-HhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHHhcCC
Q 004225 398 GVVARFVEFLTREDNPQLQLEAARALTNIAS-E----NTNVV-IDGGAV-PIFVK-LLSSPSDDVREKAVWALGNIARSS 469 (767)
Q Consensus 398 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~----~~~~~-~~~~~l-~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~ 469 (767)
..+..+++++......++.......+..+.. + .+..+ .+..-. ..+.. ++..+++-....+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 4577788888876657888888888888877 2 22222 232222 22333 333344445555555556655333
Q ss_pred chhHHHHHhcCCHH--HHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchh--chHHHHHHHhcC------------
Q 004225 470 PRDRDLVLSEKALI--PLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVR--PALPALAQLVHS------------ 533 (767)
Q Consensus 470 ~~~~~~~~~~g~i~--~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~--~~i~~L~~ll~~------------ 533 (767)
+...+.+ ...+. -++..+....+.+.+..++.++..+.+.+..+...... ..+|.++.+++.
T Consensus 157 ~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 157 LHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp TCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred CccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 2211111 11122 34555633234566778899999888876555444322 346666544331
Q ss_pred ---C--CHHHHHHHHHHHHhhccCChhHHHHHHhcCcH--HHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhh
Q 004225 534 ---N--DNDVLRYACEALSCLSDGTNDKIQAVIEADVC--PRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGI 606 (767)
Q Consensus 534 ---~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v 606 (767)
+ ..+++..++.++.-++...+ ..+.+...++. +.++..++.... +.+.+-++.++.|+........
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~K-EKvvRv~la~l~Nll~~~~~~~----- 307 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIK-EKVSRLCISIILQCCSTRVKQH----- 307 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTSSSSTTH-----
T ss_pred ccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcccchhh-----
Confidence 1 25678899999999887754 44445544433 566666665432 1444444444444443221000
Q ss_pred hHHHHHHHhhhccCCHHHHHH-HHHcCCHHHHHHHHhcC---CchhHHHHHHHH---------------------HHhhc
Q 004225 607 AKEACRTISNITAGNREQIQV-VIDAGVIGPLVDLLQNA---EFFTKKEAARAI---------------------SNAIS 661 (767)
Q Consensus 607 ~~~a~~~l~nl~~~~~~~~~~-~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L---------------------~nl~~ 661 (767)
...... ++..++ +.+++.|+.. ++++....-... +....
T Consensus 308 ---------------~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~ 371 (480)
T 1ho8_A 308 ---------------KKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLC 371 (480)
T ss_dssp ---------------HHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCC
T ss_pred ---------------hhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcc
Confidence 111111 212222 3344444332 222222211111 11111
Q ss_pred CCCHHHH---------HHHHH--cCChHHHHhhhcC----------CCHHHHHHHHHHHHHHHHhhhhhhccCCcccccc
Q 004225 662 GGTHEQI---------KYLVR--KGCIKPLCDLLLY----------ADPEIVTICLKGLENILKVGEAEMNTGTANRYFN 720 (767)
Q Consensus 662 ~~~~~~~---------~~l~~--~~~i~~L~~ll~~----------~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~ 720 (767)
. +|-+. ..+.+ ..+++.|++++++ .|+.+...|+.=|+.+++..+.
T Consensus 372 W-SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~------------ 438 (480)
T 1ho8_A 372 W-SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE------------ 438 (480)
T ss_dssp C-CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT------------
T ss_pred c-CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc------------
Confidence 1 12111 12111 1357788888873 4678888899999999986443
Q ss_pred HHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 004225 721 HYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYW 758 (767)
Q Consensus 721 ~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 758 (767)
.+..+.+.|+-+.+.+++.|+|++|+..|..++.++.
T Consensus 439 -gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 439 -SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp -HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999998764
No 204
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.11 E-value=6.1e-06 Score=80.11 Aligned_cols=194 Identities=12% Similarity=0.107 Sum_probs=135.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-HhcCCchhHHHHHh-cCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC-CCCc-
Q 004225 442 IFVKLLSSPSDDVREKAVWALGN-IARSSPRDRDLVLS-EKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP-EPPF- 517 (767)
Q Consensus 442 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-~~~~- 517 (767)
.+.+.+.+.++.-|..|+..|.. ++.+.+.......+ ...+..+.+.+..+.+..++..|+.+++.++.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667789999999999999999 87544432100001 12466777777568889999999999999996533 2222
Q ss_pred cchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccC
Q 004225 518 DQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGD 597 (767)
Q Consensus 518 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~ 597 (767)
.....++|.++..+.+....++..+..++..++...+.....-.-..+++.+...+++.++
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~------------------- 160 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTP------------------- 160 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSH-------------------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCCh-------------------
Confidence 3556789999999999889999999888888886432110000001267888999999988
Q ss_pred CcceeehhhhHHHHHHHhhhccCCH---HHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhc
Q 004225 598 GFLTQCTGIAKEACRTISNITAGNR---EQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAIS 661 (767)
Q Consensus 598 ~~~~~~l~v~~~a~~~l~nl~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~ 661 (767)
.++.+++.+++.++.... ......+...++|.+.+++.+.+..||..|..+++.++.
T Consensus 161 -------~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 161 -------QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp -------HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 556666666655554222 223233324689999999999999999999999998874
No 205
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.11 E-value=2.7e-05 Score=74.24 Aligned_cols=109 Identities=12% Similarity=0.134 Sum_probs=50.4
Q ss_pred ccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccc
Q 004225 198 VTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDE 277 (767)
Q Consensus 198 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 277 (767)
.+++|++|+++++......+..+..+++|++|+|+++. ++.++.. .+..+++|++|+++++. +..++.....
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~-~f~~l~~L~~L~L~~N~-l~~~~~~~~~----- 125 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKS-LFEGLFSLQLLLLNANK-INCLRVDAFQ----- 125 (220)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTT-----
T ss_pred CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHh-HccCCCCCCEEECCCCC-CCEeCHHHcC-----
Confidence 34566666665543222112234455666666665542 3333322 23445666666665543 3333222111
Q ss_pred cccccccceEeecCCCCcccccCCCccccCCccceEeecCC
Q 004225 278 VITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDC 318 (767)
Q Consensus 278 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 318 (767)
.+++|+.|++++. +++.++.. ....+++|++|++.+.
T Consensus 126 --~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 126 --DLHNLNLLSLYDN-KLQTIAKG-TFSPLRAIQTMHLAQN 162 (220)
T ss_dssp --TCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred --CCCCCCEEECCCC-cCCEECHH-HHhCCCCCCEEEeCCC
Confidence 1456666666553 23333321 1234555666666554
No 206
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.10 E-value=8.8e-05 Score=76.48 Aligned_cols=338 Identities=14% Similarity=0.080 Sum_probs=194.1
Q ss_pred HHHHHhhhc-CCCHHHHHHHHHHHHHhc--CC---Ch-HHHHhcC-chHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhh
Q 004225 361 LPGMLAGVW-SDDSGLQLEATTWFRKLL--LP---PS-EKVIQSG-VVARFVEFLTREDNPQLQLEAARALTNIAS-ENT 431 (767)
Q Consensus 361 i~~l~~~l~-s~~~~~~~~a~~~L~~l~--~~---~~-~~i~~~g-~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~ 431 (767)
+..+++.|+ ....++....+..+..+. ++ .. ..+.+.. ....+.......+++-....|..++..++. ...
T Consensus 79 ~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~ 158 (480)
T 1ho8_A 79 LIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH 158 (480)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCc
Confidence 455666665 556777777777777776 33 11 1222222 222233322234425555666665555544 111
Q ss_pred HHHHhCCChH--HHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcC--CHHHHHHHHcc---------------
Q 004225 432 NVVIDGGAVP--IFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEK--ALIPLLAQLNK--------------- 491 (767)
Q Consensus 432 ~~~~~~~~l~--~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~--------------- 491 (767)
..-.-...+. .++..|.. ++.+.+..++.++..+... +++|..+.+.+ .++.++.++..
T Consensus 159 ~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~ 237 (480)
T 1ho8_A 159 NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNS 237 (480)
T ss_dssp CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC------------
T ss_pred cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccC
Confidence 0000001122 34455555 3456677888899988865 67888876543 36666554421
Q ss_pred -CCChHHHHHHHHHHHhhcCCCCCCCccchhch--HHHHHHHhc-CCCHHHHHHHHHHHHhhccCCh----hHHH-HHHh
Q 004225 492 -HAKPSMLRNATKTLSRFCQGKPEPPFDQVRPA--LPALAQLVH-SNDNDVLRYACEALSCLSDGTN----DKIQ-AVIE 562 (767)
Q Consensus 492 -~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~--i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~----~~~~-~~~~ 562 (767)
....+++..++.+++.++-..+........++ ++.|+..++ ...+++.+-++.++.|+....+ .... .+..
T Consensus 238 ~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~ 317 (480)
T 1ho8_A 238 NHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL 317 (480)
T ss_dssp -CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH
Confidence 11356788899999999977643233333333 256666666 4569999999999999997652 1222 2322
Q ss_pred cCcHHHHHHHhcCCCCCC-cccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHH-HHH----------H
Q 004225 563 ADVCPRLVKLLLHPLPFP-FGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQ-VVI----------D 630 (767)
Q Consensus 563 ~~~~~~L~~lL~~~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~-~~~----------~ 630 (767)
.++ +.+++.|......+ ++....-.....+.......+ ..-+......+....-+|.+.. .+. +
T Consensus 318 ~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lt---sfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~ 393 (480)
T 1ho8_A 318 GNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELT---SFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 393 (480)
T ss_dssp HCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCC---HHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGG
T ss_pred ccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcc
Confidence 334 45666665543311 332222221111111100000 2223333333333332222222 111 1
Q ss_pred cCCHHHHHHHHhc----------CCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHH
Q 004225 631 AGVIGPLVDLLQN----------AEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLE 700 (767)
Q Consensus 631 ~~~i~~L~~ll~~----------~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~ 700 (767)
..++..|+++|++ .++.+..-||.=++.++.. .|+....+-+.|+=..+++++.++|++|+.+|+.|+.
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2357889999984 3678889999999999987 5777777777899999999999999999999999999
Q ss_pred HHHH
Q 004225 701 NILK 704 (767)
Q Consensus 701 ~l~~ 704 (767)
.++.
T Consensus 473 klm~ 476 (480)
T 1ho8_A 473 AIIG 476 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9885
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=2.1e-07 Score=102.41 Aligned_cols=83 Identities=10% Similarity=0.101 Sum_probs=48.5
Q ss_pred cccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhc-CchhhhccccCcEEeEccccccchhccccccccc
Q 004225 197 SVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVL-TSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAK 275 (767)
Q Consensus 197 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 275 (767)
..+++|++|+++++. ++.++ ..+.+++|+.|+++++. ++.+. +.. +..+++|+.|++++++ +...+.....
T Consensus 483 ~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~-l~~~~~~~~~--- 554 (567)
T 1dce_A 483 AALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR-LQQSAAIQP-LVSCPRLVLLNLQGNS-LCQEEGIQER--- 554 (567)
T ss_dssp GGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGG-GGGCTTCCEEECTTSG-GGGSSSCTTH---
T ss_pred hcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHH-HhcCCCCCEEEecCCc-CCCCccHHHH---
Confidence 345777777776643 33433 56677888888887763 44442 222 4567888888887765 4444332211
Q ss_pred cccccccccceEe
Q 004225 276 DEVITFRELKELK 288 (767)
Q Consensus 276 ~~~~~~~~L~~L~ 288 (767)
-...+|+|+.|.
T Consensus 555 -l~~~lp~L~~L~ 566 (567)
T 1dce_A 555 -LAEMLPSVSSIL 566 (567)
T ss_dssp -HHHHCTTCSEEE
T ss_pred -HHHHCcccCccC
Confidence 001267777774
No 208
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.08 E-value=3.2e-06 Score=77.66 Aligned_cols=126 Identities=15% Similarity=0.156 Sum_probs=63.6
Q ss_pred cccccEEEecCCCccccccCCCCc-CCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccc-cccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPPSTS-FQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGD-DVVAKD 276 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~-~~~~~~ 276 (767)
+++|++|+++++. +..+ +.... +++|++|+++++. ++.+ . .+..+++|++|+++++. +..++... ..
T Consensus 18 ~~~L~~L~l~~n~-l~~i-~~~~~~~~~L~~L~Ls~N~-l~~~-~--~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~---- 86 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IPVI-ENLGATLDQFDAIDFSDNE-IRKL-D--GFPLLRRLKTLLVNNNR-ICRIGEGLDQA---- 86 (176)
T ss_dssp TTSCEEEECTTSC-CCSC-CCGGGGTTCCSEEECCSSC-CCEE-C--CCCCCSSCCEEECCSSC-CCEECSCHHHH----
T ss_pred cCCceEEEeeCCC-Cchh-HHhhhcCCCCCEEECCCCC-CCcc-c--ccccCCCCCEEECCCCc-ccccCcchhhc----
Confidence 4566666666653 2333 22222 3367777776653 3333 1 13456667777766654 44443322 12
Q ss_pred ccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCccccccc----CCCCcccchhhccc
Q 004225 277 EVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEG----KLSTPKLHKVERHG 341 (767)
Q Consensus 277 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~----~~~~~~L~~l~i~~ 341 (767)
+++|+.|+++++ .++.++.-.....+|+|++|++.+++ +..+|.. ....++|+.+++++
T Consensus 87 ----l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 87 ----LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ----CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ----CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 566777777665 33444421122356677777776663 3334432 22334556555554
No 209
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.06 E-value=0.00027 Score=80.77 Aligned_cols=305 Identities=14% Similarity=0.129 Sum_probs=206.4
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-----hhhHH
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-----ENTNV 433 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-----~~~~~ 433 (767)
.+..+++.+...+......|+..+..+. .......+..+++..+.+.+.+.. .. +.|+.++..++. ...+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~e~ 91 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSVEP 91 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCccc
Confidence 4556677777655666677888888776 221111122367788888877765 22 888999999986 12222
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC
Q 004225 434 VIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP 513 (767)
Q Consensus 434 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 513 (767)
++ -+.+|.++....+.+..++..|..+...+...-+...- ..+++.+++.+........+..|+.++..++...+
T Consensus 92 ~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~ 166 (986)
T 2iw3_A 92 YI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK 166 (986)
T ss_dssp HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH
T ss_pred ch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH
Confidence 22 25789999988888899999888888877754333221 22678999999556679999999999999997654
Q ss_pred CCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh-hHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhh
Q 004225 514 EPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTN-DKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRY 592 (767)
Q Consensus 514 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~ 592 (767)
..-......++|.+...+-+..+++..++..++..+|..-. ..+ ...+|.|++.+.+++. ...++..|+.
T Consensus 167 ~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~----~~~~~~~l~~ 237 (986)
T 2iw3_A 167 DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE----VPETVHLLGA 237 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH----HHHHHHHHTT
T ss_pred HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh----hHHHHHHhhc
Confidence 33344456788988899999999999999999988885321 122 2478899999988853 2222222222
Q ss_pred hhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCC-CHHHHHHH
Q 004225 593 IVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGG-THEQIKYL 671 (767)
Q Consensus 593 l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~l 671 (767)
-+.-. ++...++.. ++|.|.+-|......+++.++.++.||+.-. ++..+..+
T Consensus 238 ~tfv~-------~v~~~~l~~-------------------~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f 291 (986)
T 2iw3_A 238 TTFVA-------EVTPATLSI-------------------MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF 291 (986)
T ss_dssp CCCCS-------CCCHHHHHH-------------------HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CeeEe-------eecchhHHH-------------------HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh
Confidence 21100 011111111 4688888888889999999999999998632 56665554
Q ss_pred HHcCChHHHHhhhcC-CCHHHHHHHHHHHHHHHHhhhh
Q 004225 672 VRKGCIKPLCDLLLY-ADPEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 672 ~~~~~i~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~~ 708 (767)
+- ..++-+....+. .+|++|+.|..|+..+...+..
T Consensus 292 ~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 292 LG-KLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hh-hhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 33 366666666654 6999999999999999876543
No 210
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.00 E-value=3.1e-05 Score=72.12 Aligned_cols=129 Identities=11% Similarity=0.118 Sum_probs=70.2
Q ss_pred cEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcc
Q 004225 9 TRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDI 88 (767)
Q Consensus 9 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (767)
+++++++. .++.+|. .+ ..+|++|+++++. +..+... ..+..+++|++|+++++ .++.+.... .
T Consensus 11 ~~l~~s~~-~l~~ip~-~~---~~~l~~L~l~~n~-i~~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~ 74 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPR-DI---PLHTTELLLNDNE-LGRISSD-------GLFGRLPHLVKLELKRN-QLTGIEPNA--F 74 (192)
T ss_dssp TEEECTTS-CCSSCCS-CC---CTTCSEEECCSCC-CCSBCCS-------CSGGGCTTCCEEECCSS-CCCCBCTTT--T
T ss_pred CEEEcCCC-CcCcCcc-CC---CCCCCEEECCCCc-CCccCCc-------cccccCCCCCEEECCCC-CCCCcCHhH--c
Confidence 56666664 3555532 21 2267777777663 4433110 11445677777777765 344443222 3
Q ss_pred cCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCC
Q 004225 89 LEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSAS 168 (767)
Q Consensus 89 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (767)
..+++|++|+++++. ++...+..+ ..+++|++|+++++......+ ..+..+++|+.|.+++.+..
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 75 EGASHIQELQLGENK-IKEISNKMF--LGLHQLKTLNLYDNQISCVMP------------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECSSSS--TTCTTCCEEECCSSCCCEECT------------TSSTTCTTCCEEECTTCCBC
T ss_pred CCcccCCEEECCCCc-CCccCHHHh--cCCCCCCEEECCCCcCCeeCH------------HHhhcCCCCCEEEeCCCCcc
Confidence 456777777777654 333333323 256777777777765432211 23456677777777776553
No 211
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.96 E-value=0.001 Score=69.59 Aligned_cols=125 Identities=10% Similarity=0.058 Sum_probs=73.1
Q ss_pred ccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccc----hhhcCchhhhccccCcEEeEccccccchhcccccccc
Q 004225 200 NNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNL----KIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVA 274 (767)
Q Consensus 200 ~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l----~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 274 (767)
.+|+.+.+.+ .+..+... ...+++|+.+.+.+...- ..+ ....+.++++|+.+++.+ .++.+.......
T Consensus 248 ~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~- 321 (401)
T 4fdw_A 248 SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPE--SIRILGQGLLGG- 321 (401)
T ss_dssp CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCT--TCCEECTTTTTT-
T ss_pred CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCC--ceEEEhhhhhcC-
Confidence 6788888743 23333222 345788888888664321 123 233466788999998873 466555443321
Q ss_pred ccccccccccceEeecCCCCcccccCCCccccCCccceEeecCCCCcccccccCCC-C-cccchhhccc
Q 004225 275 KDEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCPDMKIFSEGKLS-T-PKLHKVERHG 341 (767)
Q Consensus 275 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~-~-~~L~~l~i~~ 341 (767)
+++|+.+.+.+ +++.+..+ ....| +|+.+.+.+. .+..++.+... . ..+..+.+..
T Consensus 322 ------c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 322 ------NRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ------CCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred ------CCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 67888888853 57777654 33456 8999999876 33333332221 1 2455565554
No 212
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.91 E-value=5.4e-05 Score=69.39 Aligned_cols=129 Identities=15% Similarity=0.166 Sum_probs=68.2
Q ss_pred ccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCc
Q 004225 8 LTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLD 87 (767)
Q Consensus 8 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 87 (767)
.+.+++.+. +++.+| .. ..++|++|+++++. +.++. +..+..+++|++|+++++ .++.++...
T Consensus 9 ~~~l~~~~~-~l~~~p-~~---~~~~l~~L~l~~n~-l~~~~--------~~~~~~l~~L~~L~l~~n-~l~~~~~~~-- 71 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVP-TG---IPSSATRLELESNK-LQSLP--------HGVFDKLTQLTKLSLSQN-QIQSLPDGV-- 71 (177)
T ss_dssp TTEEECCSS-CCSSCC-TT---CCTTCSEEECCSSC-CCCCC--------TTTTTTCTTCSEEECCSS-CCCCCCTTT--
T ss_pred CCEEEecCC-CCccCC-CC---CCCCCcEEEeCCCc-ccEeC--------HHHhcCcccccEEECCCC-cceEeChhH--
Confidence 455666554 344443 21 23567777777654 43331 112345677777777765 355444332
Q ss_pred ccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCC
Q 004225 88 ILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSA 167 (767)
Q Consensus 88 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (767)
...+++|++|+++++. ++...+..+ ..+++|++|+++++... .++. ..+..+++|+.|.+++++.
T Consensus 72 ~~~l~~L~~L~l~~N~-l~~~~~~~~--~~l~~L~~L~l~~N~l~-~~~~-----------~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 72 FDKLTKLTILYLHENK-LQSLPNGVF--DKLTQLKELALDTNQLK-SVPD-----------GIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCS-CCCT-----------TTTTTCTTCCEEECCSSCB
T ss_pred ccCCCccCEEECCCCC-ccccCHHHh--hCCcccCEEECcCCcce-EeCH-----------HHhcCCcccCEEEecCCCe
Confidence 2356777777777653 333322222 25677777777766432 2111 1245566777777776654
Q ss_pred C
Q 004225 168 S 168 (767)
Q Consensus 168 ~ 168 (767)
.
T Consensus 137 ~ 137 (177)
T 2o6r_A 137 D 137 (177)
T ss_dssp C
T ss_pred e
Confidence 3
No 213
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.87 E-value=0.00089 Score=79.21 Aligned_cols=370 Identities=11% Similarity=0.033 Sum_probs=200.1
Q ss_pred HHHHHhhhcC--CCHHHHHHHHHHHHHhc--CC-------ChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-
Q 004225 361 LPGMLAGVWS--DDSGLQLEATTWFRKLL--LP-------PSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS- 428 (767)
Q Consensus 361 i~~l~~~l~s--~~~~~~~~a~~~L~~l~--~~-------~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~- 428 (767)
...++..+.+ .+..+|..|+..|++.. .+ ....-.+..+-..+++.+.++. +.++..++.++..++.
T Consensus 37 ~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~ 115 (960)
T 1wa5_C 37 GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADS 115 (960)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHh
Confidence 3455666643 46789999999999987 11 1111111122234455554556 8999999999999998
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCc------hhHHH---HHhcCCHHHHHHH-------HccC
Q 004225 429 ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSP------RDRDL---VLSEKALIPLLAQ-------LNKH 492 (767)
Q Consensus 429 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------~~~~~---~~~~g~i~~L~~l-------l~~~ 492 (767)
+.... -.+.++.|++.+.++++..+..++.++..++.... +.+.. +++ ...+.++++ +...
T Consensus 116 d~p~~--Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~ 192 (960)
T 1wa5_C 116 DFPDR--WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLD-VFTAPFLNLLKTVDEQITAN 192 (960)
T ss_dssp HSTTT--CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCC
T ss_pred hCccc--hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 44321 25688999999988888888999999999986321 11111 111 123433333 3221
Q ss_pred CC--------hHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCC------C---------HHHHHHHHHHHHh
Q 004225 493 AK--------PSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSN------D---------NDVLRYACEALSC 548 (767)
Q Consensus 493 ~~--------~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~------~---------~~v~~~a~~~L~~ 548 (767)
.. ..++..++.+++++...+ +..........++.+.+++... + ..++..++.++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~ 272 (960)
T 1wa5_C 193 ENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQL 272 (960)
T ss_dssp C--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHH
Confidence 11 123344666776665433 2211112244556666666421 1 2567888888888
Q ss_pred hccCChhHHHHHHhcCcHHHHHHHhcCC---CCCCcccchHHHHHhhhhccCCcce-----eeh----------------
Q 004225 549 LSDGTNDKIQAVIEADVCPRLVKLLLHP---LPFPFGLTPPLWTVRYIVKGDGFLT-----QCT---------------- 604 (767)
Q Consensus 549 l~~~~~~~~~~~~~~~~~~~L~~lL~~~---~~~~~v~~~a~~~L~~l~~~~~~~~-----~~l---------------- 604 (767)
+....++....... .+++..++.+.+. ...+.+...|+..+..++....... ..+
T Consensus 273 l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~ 351 (960)
T 1wa5_C 273 YTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLRE 351 (960)
T ss_dssp HHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCG
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCH
Confidence 77554443322221 3555556655421 1112555566666655543211000 000
Q ss_pred ------------------------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh------cCCchhHHHHHH
Q 004225 605 ------------------------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ------NAEFFTKKEAAR 654 (767)
Q Consensus 605 ------------------------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~ 654 (767)
..|..|...+..++....+.. +. .+++.+.+.+. +.++..|..|..
T Consensus 352 ~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~ 427 (960)
T 1wa5_C 352 EDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIY 427 (960)
T ss_dssp GGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC----CHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 222333333333333211100 00 12233333444 456688899999
Q ss_pred HHHHhhcCCC-HH----------HHHHHHHcCChHHHHhhhcCC---CHHHHHHHHHHHHHHHHhhhhhhccCCcccccc
Q 004225 655 AISNAISGGT-HE----------QIKYLVRKGCIKPLCDLLLYA---DPEIVTICLKGLENILKVGEAEMNTGTANRYFN 720 (767)
Q Consensus 655 ~L~nl~~~~~-~~----------~~~~l~~~~~i~~L~~ll~~~---~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~ 720 (767)
+++.++.++. .+ ....++..-+++ .+.++ .+.+|..|+|++..+..... .
T Consensus 428 algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~------------~ 491 (960)
T 1wa5_C 428 LFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT------------K 491 (960)
T ss_dssp HHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC------------H
T ss_pred HHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC------------H
Confidence 9999975421 00 111111111222 23444 88999999999999886421 0
Q ss_pred HHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 004225 721 HYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSC 760 (767)
Q Consensus 721 ~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 760 (767)
++. ...++.+.+.+.++++.|+..|..++.+|...
T Consensus 492 ~~l-----~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 492 AQL-----IELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHH-----HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 111 22356666667788899999999999998763
No 214
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.82 E-value=0.0004 Score=67.93 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=136.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCccee
Q 004225 523 ALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQ 602 (767)
Q Consensus 523 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 602 (767)
-+..++.-+.+.+.+.++.++.-|..+...+......++..+++..|++.....+.
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g------------------------ 174 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH------------------------ 174 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH------------------------
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh------------------------
Confidence 34556666677888889999999998555555677889999999999999999887
Q ss_pred ehhhhHHHHHHHhhhccCCHHHHHHHH-HcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH-------c
Q 004225 603 CTGIAKEACRTISNITAGNREQIQVVI-DAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR-------K 674 (767)
Q Consensus 603 ~l~v~~~a~~~l~nl~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~-------~ 674 (767)
+++..++.+++++... ......++ ....|..+..++.+....|.+.|...|..++.. ++.....+.+ .
T Consensus 175 --N~q~Y~L~AL~~LM~~-v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~-se~~~~lv~~av~~v~~~ 250 (339)
T 3dad_A 175 --NYQSYILRALGQLMLF-VDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEY-SENNAPLFIRAVNSVAST 250 (339)
T ss_dssp --HHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhc-cccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHcc-CcccchHHHHHHHHhhhc
Confidence 4445555555555443 33333344 334677888888887888999999999888765 2222222221 1
Q ss_pred ---CChHHHHhhhc---CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCC--ChHH
Q 004225 675 ---GCIKPLCDLLL---YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHD--SNGI 746 (767)
Q Consensus 675 ---~~i~~L~~ll~---~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v 746 (767)
-....|+.+++ +.|.+++..|+..|..++...+... ........+.+.|.-..+.+.+... ++++
T Consensus 251 ~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l 323 (339)
T 3dad_A 251 TGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDL 323 (339)
T ss_dssp HCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHH
T ss_pred cCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHH
Confidence 23778999997 6799999999999999988765433 2446788898999888888877775 6676
Q ss_pred HH
Q 004225 747 CE 748 (767)
Q Consensus 747 ~~ 748 (767)
++
T Consensus 324 ~~ 325 (339)
T 3dad_A 324 RT 325 (339)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 215
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=0.00028 Score=71.97 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=65.6
Q ss_pred cccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccchhhcCchhhhccccCc-EEeEccccccchhcccccccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLR-YMKIKSCDRITEIVQGDDVVAKD 276 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~i~~c~~l~~~~~~~~~~~~~ 276 (767)
+++|+++++.++. +..++.. ...+++|++|++.+. ++.+... .+.++++|+ .|++.+ .++.+.......
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~-aF~~~~~L~~~l~l~~--~l~~I~~~aF~~--- 295 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQR-VFSNCGRLAGTLELPA--SVTAIEFGAFMG--- 295 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTT-TTTTCTTCCEEEEECT--TCCEECTTTTTT---
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHH-HhhCChhccEEEEEcc--cceEEchhhhhC---
Confidence 5778888887643 4444433 446778888888763 6666443 356788888 888876 566665443221
Q ss_pred ccccccccceEeecCCCCcccccCCCccccCCccceEe
Q 004225 277 EVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLV 314 (767)
Q Consensus 277 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 314 (767)
+++|+.+.+.+ .+++.++.+ ....|++|+.++
T Consensus 296 ----c~~L~~l~l~~-n~i~~I~~~-aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 ----CDNLRYVLATG-DKITTLGDE-LFGNGVPSKLIY 327 (329)
T ss_dssp ----CTTEEEEEECS-SCCCEECTT-TTCTTCCCCEEE
T ss_pred ----CccCCEEEeCC-CccCccchh-hhcCCcchhhhc
Confidence 67888888753 367777653 345678888775
No 216
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=8.4e-05 Score=81.70 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=68.8
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
.|++|+++++ .++.+|. +..+++|++|+++++. +..+ |..+..+++|+.|+++++ .++.+|.
T Consensus 442 ~L~~L~Ls~n-~l~~lp~---~~~l~~L~~L~Ls~N~-l~~l---------p~~~~~l~~L~~L~Ls~N-~l~~lp~--- 503 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH---LEQLLLVTHLDLSHNR-LRAL---------PPALAALRCLEVLQASDN-ALENVDG--- 503 (567)
T ss_dssp TCSEEECTTS-CCSSCCC---GGGGTTCCEEECCSSC-CCCC---------CGGGGGCTTCCEEECCSS-CCCCCGG---
T ss_pred CceEEEecCC-CCCCCcC---ccccccCcEeecCccc-cccc---------chhhhcCCCCCEEECCCC-CCCCCcc---
Confidence 5778888886 4666643 4677888888888774 4443 345666788888888875 3555551
Q ss_pred cccCCCCccEEEeccCCcccccc-cccccccccCCCceeeeCCccc
Q 004225 87 DILEFPSLKELRISKCPEFMVRT-TSIFTERVFPNLEKLKVDAKHV 131 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~l~~L~~L~l~~~~~ 131 (767)
...+++|+.|+++++. ++... +..+ ..+++|+.|++++|+.
T Consensus 504 -l~~l~~L~~L~Ls~N~-l~~~~~p~~l--~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 504 -VANLPRLQELLLCNNR-LQQSAAIQPL--VSCPRLVLLNLQGNSL 545 (567)
T ss_dssp -GTTCSSCCEEECCSSC-CCSSSTTGGG--GGCTTCCEEECTTSGG
T ss_pred -cCCCCCCcEEECCCCC-CCCCCCcHHH--hcCCCCCEEEecCCcC
Confidence 4567888888888764 33332 3323 3678888888887764
No 217
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.75 E-value=0.0011 Score=78.47 Aligned_cols=309 Identities=12% Similarity=0.060 Sum_probs=163.2
Q ss_pred HHhhcCHHHHHhhhcCCCHHHHHHHHHHHHHhc--CC---Ch----HHH--HhcCchHHHHh-------hccCCCCH--H
Q 004225 355 IQKLVSLPGMLAGVWSDDSGLQLEATTWFRKLL--LP---PS----EKV--IQSGVVARFVE-------FLTREDNP--Q 414 (767)
Q Consensus 355 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~---~~----~~i--~~~g~i~~L~~-------ll~~~~~~--~ 414 (767)
|+.+ +|.+++.++++++..+..++..+..++ .. .. ..+ +-....+.+++ .++.+... .
T Consensus 121 Wp~l--l~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~ 198 (960)
T 1wa5_C 121 WPTL--LSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKAS 198 (960)
T ss_dssp CTTH--HHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHH
T ss_pred hhHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4444 889999999988888889999999887 11 11 111 11122333333 24443211 1
Q ss_pred H------HHHHHHHHHHHHh-hhhHHHHh--CCChHHHHHhhCC------CC---------HHHHHHHHHHHHHHhcCCc
Q 004225 415 L------QLEAARALTNIAS-ENTNVVID--GGAVPIFVKLLSS------PS---------DDVREKAVWALGNIARSSP 470 (767)
Q Consensus 415 ~------~~~a~~~L~~l~~-~~~~~~~~--~~~l~~L~~lL~~------~~---------~~v~~~a~~~L~nl~~~~~ 470 (767)
+ ...++.++..+.. +....+.+ ...++.+.+++.. .+ ..++..+..++..++...+
T Consensus 199 ~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~ 278 (960)
T 1wa5_C 199 LNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE 278 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234555554433 11221111 1223555555532 11 2467777888887775433
Q ss_pred hhHHHHHhcCCHHHHHHHHc----cCCChHHHHHHHHHHHhhcCCCCCCCc----cchhchH-HHHHHHhc---------
Q 004225 471 RDRDLVLSEKALIPLLAQLN----KHAKPSMLRNATKTLSRFCQGKPEPPF----DQVRPAL-PALAQLVH--------- 532 (767)
Q Consensus 471 ~~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~~~~~L~~l~~~~~~~~~----~~~~~~i-~~L~~ll~--------- 532 (767)
+.-...+ ...++..++.+. ...+..++..++..+..++........ .....++ +.++..+.
T Consensus 279 ~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w 357 (960)
T 1wa5_C 279 DVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELF 357 (960)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTT
T ss_pred HHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHH
Confidence 3211111 124555555553 145678888888888888765321111 1223333 33334432
Q ss_pred CCC--------------HHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhc------CCCCCCcccchHHHHHhh
Q 004225 533 SND--------------NDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLL------HPLPFPFGLTPPLWTVRY 592 (767)
Q Consensus 533 ~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~------~~~~~~~v~~~a~~~L~~ 592 (767)
.+| ...+..|..++..++....+..- . .+++.+.+.+. +.++
T Consensus 358 ~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~---~-~~l~~i~~~l~~~~~~~~~~w-------------- 419 (960)
T 1wa5_C 358 EDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVT---N-IFLAHMKGFVDQYMSDPSKNW-------------- 419 (960)
T ss_dssp TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHH---H-HHHHHHHHHHHHHHC----CH--------------
T ss_pred hcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHH---H-HHHHHHHHHHHHhccCcchhH--------------
Confidence 011 23555666666666654432111 0 13333434443 2333
Q ss_pred hhccCCcceeehhhhHHHHHHHhhhccCC---H---H------HHHHHHHcCCHHHHHHHHhcC---CchhHHHHHHHHH
Q 004225 593 IVKGDGFLTQCTGIAKEACRTISNITAGN---R---E------QIQVVIDAGVIGPLVDLLQNA---EFFTKKEAARAIS 657 (767)
Q Consensus 593 l~~~~~~~~~~l~v~~~a~~~l~nl~~~~---~---~------~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~ 657 (767)
..+..|+.+++.++.+. . . ....++. ..++..+.++ ++.+|..|+|+++
T Consensus 420 ------------~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg 483 (960)
T 1wa5_C 420 ------------KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIY 483 (960)
T ss_dssp ------------HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHH
Confidence 34555566666554320 0 0 1112211 1223334555 7899999999999
Q ss_pred HhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 658 NAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 658 nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
.++....++.... +++.++..+.+.++.|+..|++||.+++..
T Consensus 484 ~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 484 TFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 9988654443332 677888888888899999999999999874
No 218
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.70 E-value=0.00026 Score=65.73 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=17.5
Q ss_pred cccccEEEecCCCccccccCCCCcCCCCCEEEeccCc
Q 004225 199 TNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCN 235 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 235 (767)
+++|++|++++.......+.....+++|++|++++++
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 3555555555543222222234445566666665543
No 219
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.69 E-value=0.00017 Score=67.06 Aligned_cols=127 Identities=14% Similarity=0.169 Sum_probs=74.9
Q ss_pred cEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcc
Q 004225 9 TRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDI 88 (767)
Q Consensus 9 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (767)
+++++++. .++.+|. . -.++|++|+++++. +..+ +..+..+++|++|+++++ .++.++... .
T Consensus 13 ~~l~~~~~-~l~~ip~-~---~~~~l~~L~L~~n~-i~~i---------p~~~~~l~~L~~L~Ls~N-~i~~i~~~~--f 74 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPK-G---IPRDVTELYLDGNQ-FTLV---------PKELSNYKHLTLIDLSNN-RISTLSNQS--F 74 (193)
T ss_dssp TEEECTTS-CCSSCCS-C---CCTTCCEEECCSSC-CCSC---------CGGGGGCTTCCEEECCSS-CCCCCCTTT--T
T ss_pred CEEEcCCC-CCCcCCC-C---CCCCCCEEECCCCc-Cchh---------HHHhhcccCCCEEECCCC-cCCEeCHhH--c
Confidence 45666654 3555532 2 13568888887764 4433 234455778888888775 355554433 3
Q ss_pred cCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCCC
Q 004225 89 LEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSAS 168 (767)
Q Consensus 89 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (767)
..+++|++|+++++. ++...+..+ ..+++|+.|+++++....- + ...+..+++|+.|.+.+.+..
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~i~~~~f--~~l~~L~~L~L~~N~l~~~-~-----------~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 75 SNMTQLLTLILSYNR-LRCIPPRTF--DGLKSLRLLSLHGNDISVV-P-----------EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTT--TTCTTCCEEECCSSCCCBC-C-----------TTTTTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCc-cCEeCHHHh--CCCCCCCEEECCCCCCCee-C-----------hhhhhcCccccEEEeCCCCee
Confidence 457788888887764 333333334 2577888888887654221 1 113556777888888776543
No 220
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.68 E-value=0.00016 Score=66.18 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=69.5
Q ss_pred cccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccc
Q 004225 199 TNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDE 277 (767)
Q Consensus 199 ~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 277 (767)
+++|++|+++++. +..+++. ...+++|++|+++++ .++.++... +..+++|++|+++++. ++.++.....
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~----- 97 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGV-FDKLTKLTILYLHENK-LQSLPNGVFD----- 97 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTTT-----
T ss_pred CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhH-ccCCCccCEEECCCCC-ccccCHHHhh-----
Confidence 3678888887754 3343333 356788888888876 455554332 3568888888888764 5555443211
Q ss_pred cccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 278 VITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 278 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
.+++|+.|++++. .++.++.. ....+++|++|++.+++
T Consensus 98 --~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 98 --KLTQLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp --TCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred --CCcccCEEECcCC-cceEeCHH-HhcCCcccCEEEecCCC
Confidence 1678888888876 56666542 12457888888888775
No 221
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.65 E-value=0.0061 Score=72.75 Aligned_cols=338 Identities=9% Similarity=0.093 Sum_probs=180.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc----C--CC---h-------HHHHh--cCchHHHHhhccCCCCHHHHHHHHHH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL----L--PP---S-------EKVIQ--SGVVARFVEFLTREDNPQLQLEAARA 422 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~----~--~~---~-------~~i~~--~g~i~~L~~ll~~~~~~~~~~~a~~~ 422 (767)
++.+++.++ .++.....++..|..+. . .. . ..+.. ..+++.+...+.+..++.++..|+.+
T Consensus 140 l~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~ 218 (1049)
T 3m1i_C 140 IPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLES 218 (1049)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 777777776 45555556666666655 1 11 0 11221 12334444555544447889999999
Q ss_pred HHHHHh-hhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHHhcCC--ch---hHHHHHh--cCCHHHHHH------
Q 004225 423 LTNIAS-ENTNVVIDGGAVPIFVK-LLSSPSDDVREKAVWALGNIARSS--PR---DRDLVLS--EKALIPLLA------ 487 (767)
Q Consensus 423 L~~l~~-~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~--~~---~~~~~~~--~g~i~~L~~------ 487 (767)
+..+.. -....+.+...++.+.+ ++ .+++++..|+.++..+.... +. ....+.. .+.+..+..
T Consensus 219 l~~~l~wi~~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~ 296 (1049)
T 3m1i_C 219 LLRYLHWIPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVT 296 (1049)
T ss_dssp HHHHTTTSCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHhhCCHHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 988877 33344566677777773 44 37899999999999998652 21 1111111 111221111
Q ss_pred -----HHc--cCCChHHHHHHHHHHHhhcCCC------CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhcc---
Q 004225 488 -----QLN--KHAKPSMLRNATKTLSRFCQGK------PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSD--- 551 (767)
Q Consensus 488 -----ll~--~~~~~~~~~~~~~~L~~l~~~~------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--- 551 (767)
.+. .+.+.+..+..+..+..+.... +.........+++.++.....++.++...++..+..+++
T Consensus 297 ~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~ 376 (1049)
T 3m1i_C 297 ADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLF 376 (1049)
T ss_dssp SCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 110 1234444455555444332110 100111234567777777778888888888877777765
Q ss_pred -CC--hhHHHHHHhcCcHHHHHHHhcCCCCCC-----c------c---------cchHHHHHhhhhccCCcc-ee-----
Q 004225 552 -GT--NDKIQAVIEADVCPRLVKLLLHPLPFP-----F------G---------LTPPLWTVRYIVKGDGFL-TQ----- 602 (767)
Q Consensus 552 -~~--~~~~~~~~~~~~~~~L~~lL~~~~~~~-----~------v---------~~~a~~~L~~l~~~~~~~-~~----- 602 (767)
.. ......+.. .+++.++..+..++... + - +..+..+|..++.-.... ..
T Consensus 377 ~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~ 455 (1049)
T 3m1i_C 377 YEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISK 455 (1049)
T ss_dssp HSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 21 112222221 35566666664432100 0 0 112333343333211110 00
Q ss_pred ----------ehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhc-----CCchhHHHHHHHHHHhhcCC--CH
Q 004225 603 ----------CTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQN-----AEFFTKKEAARAISNAISGG--TH 665 (767)
Q Consensus 603 ----------~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~~--~~ 665 (767)
.-..+..|+++++.++.+.......-+-..+++.+..+... +.+.++..++|+++.++... .+
T Consensus 456 l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~ 535 (1049)
T 3m1i_C 456 LARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW 535 (1049)
T ss_dssp HHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH
Confidence 00457789999998887432221111111244445544332 23455657889999876431 22
Q ss_pred HHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhh
Q 004225 666 EQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 666 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 707 (767)
+... .+++.+++.+.++++.|+..|++++.+++....
T Consensus 536 ~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 536 NFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 2222 267778888888899999999999999998644
No 222
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.64 E-value=0.0033 Score=73.74 Aligned_cols=338 Identities=10% Similarity=0.089 Sum_probs=186.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc----C---C--C--h-----HHHHh--cCchHHHHhhccCCCCHHHHHHHHHH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL----L---P--P--S-----EKVIQ--SGVVARFVEFLTREDNPQLQLEAARA 422 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~----~---~--~--~-----~~i~~--~g~i~~L~~ll~~~~~~~~~~~a~~~ 422 (767)
++.+++.++++ +......+..|+.+. . . . + +.+.. ..+++.+..++.....+.+...+..+
T Consensus 140 l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~ 218 (1023)
T 4hat_C 140 IPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLES 218 (1023)
T ss_dssp HHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67777777543 344455555555544 1 1 0 0 11111 12444455555544446788888899
Q ss_pred HHHHHh-hhhHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHHhcCC---c--hhHHHHHh--cCCHHHH--------
Q 004225 423 LTNIAS-ENTNVVIDGGAVPIFV-KLLSSPSDDVREKAVWALGNIARSS---P--RDRDLVLS--EKALIPL-------- 485 (767)
Q Consensus 423 L~~l~~-~~~~~~~~~~~l~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~---~--~~~~~~~~--~g~i~~L-------- 485 (767)
+..... -....+++.+.++.+. .++ .+++++..|+.+|..+.... + .+.+.+.. .+.+..+
T Consensus 219 l~s~l~WI~i~~i~~~~ll~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~ 296 (1023)
T 4hat_C 219 LLRYLHWIPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVT 296 (1023)
T ss_dssp HHHHTTTSCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHhcchhHHHHHHHHHc--CCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 988888 4456777888999999 887 46789999999999998632 2 12211111 0111111
Q ss_pred ---HHHHc--cCCChHHHHHHHHHHHhhcCCCCC----C-C-ccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC--
Q 004225 486 ---LAQLN--KHAKPSMLRNATKTLSRFCQGKPE----P-P-FDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG-- 552 (767)
Q Consensus 486 ---~~ll~--~~~~~~~~~~~~~~L~~l~~~~~~----~-~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-- 552 (767)
-..+. ...|.+..+..+..+..+...... . . ......++..++.....+|.++...++..-..+++.
T Consensus 297 ~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~ 376 (1023)
T 4hat_C 297 ADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLF 376 (1023)
T ss_dssp CCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 01111 234566777777666555433210 0 0 111122344566666677888877777665555531
Q ss_pred ----ChhHHHHHHhcCcHHHHHHHhcCCCC-----C--Ccc------------cchHH-HHHhhhhccC-Cccee-----
Q 004225 553 ----TNDKIQAVIEADVCPRLVKLLLHPLP-----F--PFG------------LTPPL-WTVRYIVKGD-GFLTQ----- 602 (767)
Q Consensus 553 ----~~~~~~~~~~~~~~~~L~~lL~~~~~-----~--~~v------------~~~a~-~~L~~l~~~~-~~~~~----- 602 (767)
.......+. ..+++.+++-+..++. . .++ ..... .+|..++.-. ++..+
T Consensus 377 ~e~~~~~~~~~~~-~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~ 455 (1023)
T 4hat_C 377 YEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISK 455 (1023)
T ss_dssp TSTTTGGGGHHHH-HHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hchHHHHHHHHHH-HHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 011111121 1356666666666541 0 011 00011 1222221100 01100
Q ss_pred ----------ehhhhHHHHHHHhhhccCCHHH-HHHHHHcCCHHHHHHHHhc-----CCchhHHHHHHHHHHhhcCC--C
Q 004225 603 ----------CTGIAKEACRTISNITAGNREQ-IQVVIDAGVIGPLVDLLQN-----AEFFTKKEAARAISNAISGG--T 664 (767)
Q Consensus 603 ----------~l~v~~~a~~~l~nl~~~~~~~-~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~~--~ 664 (767)
.-..++.++|++|.++.+..+. ....+. .+++.|+.++.. ....++..++|+++..+... .
T Consensus 456 l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~ 534 (1023)
T 4hat_C 456 LARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1023)
T ss_dssp HHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 0156889999999999864332 222222 377888888874 23456677889999876531 2
Q ss_pred HHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhh
Q 004225 665 HEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 665 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 708 (767)
++.... ++..|++.+.++++.++.+|++|+.+++.....
T Consensus 535 ~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 535 WNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 332222 566778888888899999999999999986543
No 223
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.60 E-value=0.00023 Score=73.04 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=32.0
Q ss_pred ccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccccCC---CccccCCccceEeecCCC
Q 004225 248 TLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSFCSG---NCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 248 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~i~~c~ 319 (767)
.+|+|++|.+.+|........... ....+|+|++|+++. ..++..... .....+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la-----~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFL-----ESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHH-----HCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHH-----hCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 356677777766553221111000 000167777777754 344442100 011346777777777763
No 224
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.58 E-value=0.0019 Score=67.41 Aligned_cols=235 Identities=11% Similarity=0.099 Sum_probs=128.3
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
+|+.+.+.+. ++.+... .+.+ .+|+.+.+.+ +++.+. ......+++|+++++.+. +++.++...
T Consensus 136 ~L~~i~l~~~--i~~I~~~-aF~~-~~L~~i~lp~--~l~~I~--------~~aF~~c~~L~~l~l~~n-~l~~I~~~a- 199 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDM-AFFN-STVQEIVFPS--TLEQLK--------EDIFYYCYNLKKADLSKT-KITKLPAST- 199 (401)
T ss_dssp CCSEEECCTT--CCEECTT-TTTT-CCCCEEECCT--TCCEEC--------SSTTTTCTTCCEEECTTS-CCSEECTTT-
T ss_pred CccEEEeCCC--ccEECHH-hcCC-CCceEEEeCC--CccEeh--------HHHhhCcccCCeeecCCC-cceEechhh-
Confidence 5777777653 5666333 3344 4688888765 455541 123345678888888642 455565543
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
+.+.+|+++.+.. .+.......|. .+++|+++.+..+ +..+.. ..+.+ .+|+.+.+...-
T Consensus 200 --F~~~~L~~l~lp~--~l~~I~~~aF~--~~~~L~~l~l~~~--l~~I~~-----------~aF~~-~~L~~i~lp~~i 259 (401)
T 4fdw_A 200 --FVYAGIEEVLLPV--TLKEIGSQAFL--KTSQLKTIEIPEN--VSTIGQ-----------EAFRE-SGITTVKLPNGV 259 (401)
T ss_dssp --TTTCCCSEEECCT--TCCEECTTTTT--TCTTCCCEECCTT--CCEECT-----------TTTTT-CCCSEEEEETTC
T ss_pred --EeecccCEEEeCC--chheehhhHhh--CCCCCCEEecCCC--ccCccc-----------ccccc-CCccEEEeCCCc
Confidence 4467888888753 24444444453 6778888887643 111110 11222 456666653322
Q ss_pred C---CCCcccccCCceeeeeeccc----ccchhhccccccccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccch
Q 004225 167 A---SLPYEKVENGMWVEIREAFH----LEHILIRESSVTNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLK 238 (767)
Q Consensus 167 ~---~~~~~~~~~l~~l~i~~~~~----l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~ 238 (767)
. ...+....+|+.+.+.+... ...+.......+++|+.+.+.+ .+..+... ...+++|+.+.|.+ .++
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~ 335 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVT 335 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCC
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--ccc
Confidence 1 22233445566666554321 1223223344577888888863 34444333 34568899999954 355
Q ss_pred hhcCchhhhccccCcEEeEccccccchhccccccccccccccc-cccceEeecC
Q 004225 239 IVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITF-RELKELKLVD 291 (767)
Q Consensus 239 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~ 291 (767)
.+.... +.++ +|+++++.+.. +..+....... + .+++.|++-.
T Consensus 336 ~I~~~a-F~~~-~L~~l~l~~n~-~~~l~~~~F~~-------~~~~l~~l~vp~ 379 (401)
T 4fdw_A 336 QINFSA-FNNT-GIKEVKVEGTT-PPQVFEKVWYG-------FPDDITVIRVPA 379 (401)
T ss_dssp EECTTS-SSSS-CCCEEEECCSS-CCBCCCSSCCC-------SCTTCCEEEECG
T ss_pred EEcHHh-CCCC-CCCEEEEcCCC-CcccccccccC-------CCCCccEEEeCH
Confidence 554433 4567 89999998753 33333322110 3 3667777753
No 225
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.57 E-value=0.0059 Score=69.88 Aligned_cols=258 Identities=14% Similarity=0.154 Sum_probs=178.7
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-----CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-----LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVV 434 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~ 434 (767)
+..+.+.+...... ..|+..+..++ .+..+.++- +.++.++....+.. ..++..|..+...+.. -+...+
T Consensus 56 ~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 56 FGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV-QLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH-TTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHHH
Confidence 44444455432222 77888888888 233433332 67899999988888 8999999888888887 222222
Q ss_pred HhCCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCC
Q 004225 435 IDGGAVPIFVKLLSSP-SDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKP 513 (767)
Q Consensus 435 ~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 513 (767)
..++|.|+..+++. ....+..|+.++..++...++....-+ ...||.+...+ -+..+++...|..++..+|.--.
T Consensus 132 --~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 132 --KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETM-WDTKKEVKAAATAAMTKATETVD 207 (986)
T ss_dssp --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCC
T ss_pred --HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCC
Confidence 24689999988764 689999999999999976554322211 23778888888 78889999999999998886543
Q ss_pred CCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 514 EPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 514 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
+ .-..+.+|.|+..+.+++. .-.++..|+.-+.........+. =.+|.|.+-|.....
T Consensus 208 n---~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~--------------- 265 (986)
T 2iw3_A 208 N---KDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERET--------------- 265 (986)
T ss_dssp C---TTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSH---------------
T ss_pred C---cchhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcc---------------
Confidence 3 2356789999999998853 45556666665544332222221 167888888888776
Q ss_pred hccCCcceeehhhhHHHHHHHhhhcc--CCHHHHHHHHHcCCHHHHHHHHhc-CCchhHHHHHHHHHHhh
Q 004225 594 VKGDGFLTQCTGIAKEACRTISNITA--GNREQIQVVIDAGVIGPLVDLLQN-AEFFTKKEAARAISNAI 660 (767)
Q Consensus 594 ~~~~~~~~~~l~v~~~a~~~l~nl~~--~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~nl~ 660 (767)
.+++.++-++.|++. .++.....++- ..+|.+-...+. .++++|..|..++..+.
T Consensus 266 -----------~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 266 -----------GIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp -----------HHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred -----------hhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 677888888888887 66666665443 467777776664 47888888888877763
No 226
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.57 E-value=6.7e-06 Score=77.13 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=5.3
Q ss_pred cccCcEEeEccc
Q 004225 249 LVRLRYMKIKSC 260 (767)
Q Consensus 249 l~~L~~L~i~~c 260 (767)
+++|++|+++++
T Consensus 114 l~~L~~L~l~~N 125 (198)
T 1ds9_A 114 LVNLRVLYMSNN 125 (198)
T ss_dssp HHHSSEEEESEE
T ss_pred CCCCCEEECCCC
Confidence 444444444443
No 227
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.56 E-value=0.0001 Score=83.76 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=77.1
Q ss_pred ccccccccEEEecCCCccccccCCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccc
Q 004225 196 SSVTNNLVILRVKGCDHLVNLVPPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAK 275 (767)
Q Consensus 196 ~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 275 (767)
...+++|+.|+++++.. ..++.....+++|++|+|+++. ++.++. . +.++++|++|+++++. ++.++.....
T Consensus 220 ~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~-~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~--- 291 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNS-LTELPA-E-IKNLSNLRVLDLSHNR-LTSLPAELGS--- 291 (727)
T ss_dssp --CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSC-CSCCCG-G-GGGGTTCCEEECTTSC-CSSCCSSGGG---
T ss_pred hccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCc-CcccCh-h-hhCCCCCCEEeCcCCc-CCccChhhcC---
Confidence 34467888888887653 3555556678889999998874 445543 2 4678889999988876 5566655544
Q ss_pred cccccccccceEeecCCCCcccccCCCccccCCccceEeecCCC
Q 004225 276 DEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVVDDCP 319 (767)
Q Consensus 276 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 319 (767)
+++|+.|+++++ .++.++.. ...+++|++|++.+++
T Consensus 292 -----l~~L~~L~L~~N-~l~~lp~~--~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 292 -----CFQLKYFYFFDN-MVTTLPWE--FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp -----GTTCSEEECCSS-CCCCCCSS--TTSCTTCCCEECTTSC
T ss_pred -----CCCCCEEECCCC-CCCccChh--hhcCCCccEEeCCCCc
Confidence 788899988876 56777654 4578888999888885
No 228
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.44 E-value=0.0008 Score=65.82 Aligned_cols=193 Identities=18% Similarity=0.110 Sum_probs=125.9
Q ss_pred HHHHHccCCChHHHHHHHHHHHh-hcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhc
Q 004225 485 LLAQLNKHAKPSMLRNATKTLSR-FCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEA 563 (767)
Q Consensus 485 L~~ll~~~~~~~~~~~~~~~L~~-l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 563 (767)
+++.| .+.+.+.++.++..|.. +..+..........+++..|+......+.+.+.+++.++.++..+.+..-..+-..
T Consensus 123 iiekL-~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 123 ILEKL-YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHH-HHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHH-hcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 33444 34556667777778877 44444555666778899999999999999999999999999998854333323245
Q ss_pred CcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh-
Q 004225 564 DVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ- 642 (767)
Q Consensus 564 ~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~- 642 (767)
.++..+..++.+.+. .|...|+.+|..++..++.... +...|+... +.-.....++.++.+|+
T Consensus 202 ~fI~~lyslv~s~~~--~V~k~AL~LL~v~V~~se~~~~---lv~~av~~v-----------~~~~~~~p~~~Lv~~L~~ 265 (339)
T 3dad_A 202 DTIQWLYTLCASLSR--LVVKTALKLLLVFVEYSENNAP---LFIRAVNSV-----------ASTTGAPPWANLVSILEE 265 (339)
T ss_dssp HHHHHHHHGGGCSCH--HHHHHHHHHHHHHHHHCGGGHH---HHHHHHHHH-----------HHHHCCCTTHHHHHHHTT
T ss_pred HHHHHHHHHHcCccH--HHHHHHHHHHHHHHccCcccch---HHHHHHHHh-----------hhccCCCcHHHHHHHHhc
Confidence 688899999997666 7888888888888765543222 112222211 00111235889999998
Q ss_pred --cCCchhHHHHHHHHHHhhcCCC-HH----HHHHHHHcCChHHHHhhhcCC--CHHHHHH
Q 004225 643 --NAEFFTKKEAARAISNAISGGT-HE----QIKYLVRKGCIKPLCDLLLYA--DPEIVTI 694 (767)
Q Consensus 643 --~~~~~v~~~a~~~L~nl~~~~~-~~----~~~~l~~~~~i~~L~~ll~~~--~~~v~~~ 694 (767)
+.+.+++.+|...+..+..... .+ ....+-+.|+-..+.+.++.. +++++++
T Consensus 266 ~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 266 KNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 6788999998877776665433 33 223333455545566656643 5555443
No 229
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.42 E-value=0.00015 Score=74.39 Aligned_cols=160 Identities=15% Similarity=0.173 Sum_probs=81.4
Q ss_pred CCCCccEEeeecCCC----cccc---ccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccc
Q 004225 4 GIQNLTRLTLSCCMN----LRCL---FSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLE 76 (767)
Q Consensus 4 ~l~~L~~L~l~~c~~----l~~l---~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 76 (767)
.|++|+.|.+.+... +.-+ ........+|+|++|+++++.++. + +.+ ..++|++|++..|.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l----------~~~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I----------GKK-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C----------CSC-BCTTCSEEEEECSB
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e----------ccc-cCCCCcEEEEecCC
Confidence 468899998865321 0000 001223567889999998874332 1 112 26788888887653
Q ss_pred ccccccCCCCcccCCCCccEEEeccCCc-------ccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhh
Q 004225 77 KFTSFCTGDLDILEFPSLKELRISKCPE-------FMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGD 149 (767)
Q Consensus 77 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~-------l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 149 (767)
+..-....+....+|+|++|+++.+.. +.... ..+....+|+|+.|.+.+|..... . ...+..
T Consensus 205 -l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~-------~-~~~la~ 274 (362)
T 2ra8_A 205 -LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNV-------V-VEMFLE 274 (362)
T ss_dssp -CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHH-------H-HHHHHH
T ss_pred -CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchH-------H-HHHHHh
Confidence 322111111012578888888753321 11111 112113478888888877653211 0 000110
Q ss_pred HhhhccccceeeecCCCCCC--------CcccccCCceeeeeecc
Q 004225 150 FLQRLHTMKVLQIGGYSASL--------PYEKVENGMWVEIREAF 186 (767)
Q Consensus 150 ~~~~l~~L~~L~l~~~~~~~--------~~~~~~~l~~l~i~~~~ 186 (767)
...+++|+.|.++.+.... .+..+++|+.|.+.+|.
T Consensus 275 -a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 275 -SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp -CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred -CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 1235678888886654211 11345677888887664
No 230
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.41 E-value=0.00083 Score=62.29 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=24.0
Q ss_pred ccccEEEecCCCccccccC-CCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEcc
Q 004225 200 NNLVILRVKGCDHLVNLVP-PSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKS 259 (767)
Q Consensus 200 ~~L~~L~i~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 259 (767)
++|++|++++.. +..+.+ ....+++|+.|+++++. ++.++.. .+..+++|++|++.+
T Consensus 78 ~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 78 TQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEG-AFNDLSALSHLAIGA 135 (193)
T ss_dssp TTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTT-TTTTCTTCCEEECCS
T ss_pred CCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChh-hhhcCccccEEEeCC
Confidence 445555554432 222222 23344555555555532 3333221 123445555555543
No 231
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.37 E-value=2.4e-05 Score=73.30 Aligned_cols=15 Identities=7% Similarity=0.341 Sum_probs=7.7
Q ss_pred CcCCCCCEEEeccCc
Q 004225 221 TSFQNLTNMVVSRCN 235 (767)
Q Consensus 221 ~~~~~L~~L~l~~c~ 235 (767)
..+++|++|++++++
T Consensus 137 ~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 137 AALDKLEDLLLAGNP 151 (198)
T ss_dssp TTTTTCSEEEECSCH
T ss_pred hcCCCCCEEEecCCc
Confidence 344555555555543
No 232
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.34 E-value=0.00026 Score=80.49 Aligned_cols=108 Identities=14% Similarity=0.016 Sum_probs=83.5
Q ss_pred CCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCCCcccc
Q 004225 219 PSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLERLTSF 298 (767)
Q Consensus 219 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 298 (767)
....+++|+.|+|+++. +..++... .++++|++|+++++. ++.++..... +++|+.|+++++. ++.+
T Consensus 219 ~~~~l~~L~~L~Ls~n~-l~~l~~~~--~~l~~L~~L~Ls~N~-l~~lp~~~~~--------l~~L~~L~Ls~N~-l~~l 285 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-IFNISANI--FKYDFLTRLYLNGNS-LTELPAEIKN--------LSNLRVLDLSHNR-LTSL 285 (727)
T ss_dssp ---CCCCCCEEECTTSC-CSCCCGGG--GGCCSCSCCBCTTSC-CSCCCGGGGG--------GTTCCEEECTTSC-CSSC
T ss_pred hhccCCCCcEEECCCCC-CCCCChhh--cCCCCCCEEEeeCCc-CcccChhhhC--------CCCCCEEeCcCCc-CCcc
Confidence 35678999999999986 44554432 379999999999885 6677655544 8999999999875 6677
Q ss_pred cCCCccccCCccceEeecCCCCcccccccCCCCcccchhhcccc
Q 004225 299 CSGNCAFKFPSLERLVVDDCPDMKIFSEGKLSTPKLHKVERHGE 342 (767)
Q Consensus 299 ~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~l~i~~~ 342 (767)
+.. ...+++|++|++.+| .++.+|.....+++|+.|++++.
T Consensus 286 p~~--~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 286 PAE--LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSS--GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred Chh--hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 643 467899999999998 67888887667778999988874
No 233
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.28 E-value=0.013 Score=61.33 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=25.4
Q ss_pred CCCCCccEEeeecCCCccccccCccccCcCCCceeeeec
Q 004225 3 CGIQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVG 41 (767)
Q Consensus 3 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 41 (767)
..+++|+++.|.+ .++.+ ....+.++.+|+.+++.+
T Consensus 68 ~~c~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREI-GEFAFENCSKLEIINIPD 103 (394)
T ss_dssp TTCTTEEEEECCT--TCCEE-CTTTTTTCTTCCEECCCT
T ss_pred hCCCCceEEEeCC--CccCc-chhHhhCCCCCcEEEeCC
Confidence 3577888888864 36666 344456888899988854
No 234
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.23 E-value=0.12 Score=61.45 Aligned_cols=184 Identities=15% Similarity=0.123 Sum_probs=102.9
Q ss_pred CHHHHHhhhc-CCCHHHHHHHHHHHHHhc--C-----CChHHHHhcCchHHHHhhccCC-----CCHHHHHHHHHHHHHH
Q 004225 360 SLPGMLAGVW-SDDSGLQLEATTWFRKLL--L-----PPSEKVIQSGVVARFVEFLTRE-----DNPQLQLEAARALTNI 426 (767)
Q Consensus 360 ~i~~l~~~l~-s~~~~~~~~a~~~L~~l~--~-----~~~~~i~~~g~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l 426 (767)
....+...+. +.++.++..|+..|++.. . +.....++..+++.+...-..+ + +.++...+.++..+
T Consensus 49 ~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~-~~i~~kl~~~ia~I 127 (1049)
T 3m1i_C 49 AWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQ-KNLINKSDLTLVQI 127 (1049)
T ss_dssp GGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhh-HHHHHHHHHHHHHH
Confidence 3444555553 668899999999999887 2 2233344544555554433222 3 67888889999999
Q ss_pred Hh-hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCc--------hhH-----HHHHhc--CCHHHHHHHHc
Q 004225 427 AS-ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSP--------RDR-----DLVLSE--KALIPLLAQLN 490 (767)
Q Consensus 427 ~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~--------~~~-----~~~~~~--g~i~~L~~ll~ 490 (767)
+. ++... -.+.++.+++.++ .++..++.++.+|..++.... ..+ +.+.+. .+++.+...+.
T Consensus 128 a~~~~p~~--Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~ 204 (1049)
T 3m1i_C 128 LKQEWPQN--WPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLE 204 (1049)
T ss_dssp HHHHTTTT--CTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccc--chHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 44321 2467888888886 566667777888877773211 011 112111 12333444454
Q ss_pred cCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHH-HHhcCCCHHHHHHHHHHHHhhc
Q 004225 491 KHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALA-QLVHSNDNDVLRYACEALSCLS 550 (767)
Q Consensus 491 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~l~ 550 (767)
...+..++..++.++.++....+. ........++.+. .++ .+++++..++.++..+.
T Consensus 205 ~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~ 262 (1049)
T 3m1i_C 205 QGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFM--TSPDTRAITLKCLTEVS 262 (1049)
T ss_dssp HCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHH
Confidence 455677888888888776554321 1112233444444 122 14445555555444444
No 235
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.19 E-value=8.8e-05 Score=76.83 Aligned_cols=169 Identities=11% Similarity=0.021 Sum_probs=89.8
Q ss_pred CCCccEEEeccCCcccccccccccc---cccCCCceeeeCCcccccccccCCCcchhcchhhHhhhccccceeeecCCCC
Q 004225 91 FPSLKELRISKCPEFMVRTTSIFTE---RVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYSA 167 (767)
Q Consensus 91 ~~~L~~L~l~~c~~l~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (767)
.++|++|++++|..- ......+.. ...++|++|++++|..... ........+++|+.|.++++..
T Consensus 71 ~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~-----------~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPA-----------GLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHH-----------HHHHTHHHHHTEEEEECCSSCC
T ss_pred HhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHH-----------HHHHHHHHHHhccHhhcCCCCC
Confidence 467888888887632 211111110 1236888888887753111 1122234456777888777642
Q ss_pred CCCcccccCCceeeeeecccccchhhccc-cccccccEEEecCCCccc----cccCCCCcCCCCCEEEeccCccchhhcC
Q 004225 168 SLPYEKVENGMWVEIREAFHLEHILIRES-SVTNNLVILRVKGCDHLV----NLVPPSTSFQNLTNMVVSRCNNLKIVLT 242 (767)
Q Consensus 168 ~~~~~~~~~l~~l~i~~~~~l~~~~~~~~-~~~~~L~~L~i~~~~~~~----~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 242 (767)
... + ...+. ... ...++|++|++++|..-. .+.......++|++|+|++|. +++...
T Consensus 139 ~~~-------------~---~~~L~-~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~ 200 (372)
T 3un9_A 139 GPE-------------A---CKDLR-DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGL 200 (372)
T ss_dssp CHH-------------H---HHHHH-HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHH
T ss_pred CHH-------------H---HHHHH-HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHH
Confidence 110 0 01110 001 234778889988875321 111122457889999998876 554321
Q ss_pred c---hhhhccccCcEEeEccccccchhccccccccccccccccccceEeecCCC
Q 004225 243 S---LIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKDEVITFRELKELKLVDLE 293 (767)
Q Consensus 243 ~---~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 293 (767)
. ......++|++|++++|. +.......... .....++|+.|++++++
T Consensus 201 ~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~---~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 201 ELLAAQLDRNRQLQELNVAYNG-AGDTAALALAR---AAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHH---HHHHCSSCCEEECTTSS
T ss_pred HHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHH---HHHhCCCCCEEeccCCC
Confidence 1 113456789999999886 33321111000 00015889999999874
No 236
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.17 E-value=0.038 Score=65.43 Aligned_cols=317 Identities=11% Similarity=0.020 Sum_probs=158.0
Q ss_pred CchHHHHhhccC----CCCHHHHHHHHHHHHHHHhhh------------h---HHHHhCCChHHHHHhhCCC--------
Q 004225 398 GVVARFVEFLTR----EDNPQLQLEAARALTNIASEN------------T---NVVIDGGAVPIFVKLLSSP-------- 450 (767)
Q Consensus 398 g~i~~L~~ll~~----~~~~~~~~~a~~~L~~l~~~~------------~---~~~~~~~~l~~L~~lL~~~-------- 450 (767)
.+++.++.+... ..++++...|++.+..++.+. . +.++. .+++.++..+..+
T Consensus 348 ~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~p~~~~~~~~ 426 (971)
T 2x1g_F 348 RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYA-HLTRILVRKSEQPDEKSLAKW 426 (971)
T ss_dssp HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH-HHHHHHHHHTSCCCTTTTSCS
T ss_pred HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccc
Confidence 345556665533 222678888888887775411 0 11111 3445555544322
Q ss_pred CH-------HHHHHHHHHHHHHhcCCch-hHHHHHhcCCHHHHHHHHc----cCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 451 SD-------DVREKAVWALGNIARSSPR-DRDLVLSEKALIPLLAQLN----KHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 451 ~~-------~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
++ ..|..+..++..++...++ .... +.+.+-+.+. ...+...++.++++++.++.........
T Consensus 427 d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~ 501 (971)
T 2x1g_F 427 SSDDLECFRCYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKR 501 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------C
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhH
Confidence 11 3455666677776654331 1111 1222233331 1257789999999999998775332222
Q ss_pred chhchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccC
Q 004225 519 QVRPALPALAQLVH-SNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGD 597 (767)
Q Consensus 519 ~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~ 597 (767)
....+++.+..+.. +.++.++..++|+++.++..-....+.+. .+++.++..+ + + .++
T Consensus 502 ~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l-~--~--~v~-------------- 560 (971)
T 2x1g_F 502 QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGL-N--S--SMS-------------- 560 (971)
T ss_dssp HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHH-H--S--SCH--------------
T ss_pred HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHh-C--h--HHH--------------
Confidence 23334443322221 34789999999999998854222112111 3667777777 2 5 444
Q ss_pred CcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcC--CchhHHHHHHHHHHhhcCCC-HHHHHHHHHc
Q 004225 598 GFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNA--EFFTKKEAARAISNAISGGT-HEQIKYLVRK 674 (767)
Q Consensus 598 ~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~-~~~~~~l~~~ 674 (767)
..|++++.+++..........++ .++..+..++..+ +.+.+..+..+++.++.... .+...++..
T Consensus 561 ----------~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~- 628 (971)
T 2x1g_F 561 ----------AQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDI- 628 (971)
T ss_dssp ----------HHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHH-
T ss_pred ----------HHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH-
Confidence 44455555554433333332222 3666777777764 46788888889998876422 222222211
Q ss_pred CChHHHHh----hhcCC--CHHHHHHHHHHHHHHHHhhhhhhccCCcccc-----ccHHHHHHHhhchHHHHHHHhcC--
Q 004225 675 GCIKPLCD----LLLYA--DPEIVTICLKGLENILKVGEAEMNTGTANRY-----FNHYARLVEAAEGFKKIEDLKRH-- 741 (767)
Q Consensus 675 ~~i~~L~~----ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~-----~~~~~~~l~~~g~~~~l~~l~~~-- 741 (767)
.+.+++. +++.. +++.+..+..++..+.............+ . .+.+...+ ...++.+..++..
T Consensus 629 -ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~-~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~ 704 (971)
T 2x1g_F 629 -IVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQ-ATDQPIVQPVLLVM--QRTMPIFKRIAEMWV 704 (971)
T ss_dssp -HHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------------CCHHHH--HTTHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcc-cccccCCCchHHHH--HHHHHHHHHHHHhcc
Confidence 3334433 33332 44444445555544443222111000000 0 01112222 2345656655543
Q ss_pred CChHHHHHHHHHHHHh
Q 004225 742 DSNGICEKAVKILEIY 757 (767)
Q Consensus 742 ~~~~v~~~a~~~l~~~ 757 (767)
.+.++.+.+..++..+
T Consensus 705 ~~~~v~e~~~~~~~~~ 720 (971)
T 2x1g_F 705 EEIDVLEAACSAMKHA 720 (971)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4678999998888873
No 237
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.17 E-value=0.0017 Score=59.03 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=68.4
Q ss_pred ccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCc
Q 004225 8 LTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLD 87 (767)
Q Consensus 8 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 87 (767)
-+.+++++. .+..+|. .+ .++|++|+++++. +..+. +..+..+++|++|++++. +++.++...
T Consensus 14 ~~~l~~~~n-~l~~iP~-~~---~~~L~~L~Ls~N~-l~~~~--------~~~~~~l~~L~~L~Ls~N-~l~~i~~~~-- 76 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPA-GI---PTDKQRLWLNNNQ-ITKLE--------PGVFDHLVNLQQLYFNSN-KLTAIPTGV-- 76 (174)
T ss_dssp SSEEECCSS-CCSSCCS-CC---CTTCSEEECCSSC-CCCCC--------TTTTTTCTTCCEEECCSS-CCCCCCTTT--
T ss_pred CcEEEeCCC-CCCccCC-Cc---CCCCcEEEeCCCC-ccccC--------HHHhcCCcCCCEEECCCC-CCCccChhH--
Confidence 467777775 4666643 22 3678999988875 54431 234566888999998886 566666542
Q ss_pred ccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCccc
Q 004225 88 ILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHV 131 (767)
Q Consensus 88 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 131 (767)
...+++|+.|+++++. +....+..+ ..+++|+.|++++++.
T Consensus 77 ~~~l~~L~~L~L~~N~-l~~l~~~~~--~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNH-LKSIPRGAF--DNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCSEEECCSSCB
T ss_pred hCCcchhhEEECCCCc-cceeCHHHh--ccccCCCEEEeCCCCc
Confidence 2467889999988764 444333333 3678888888887764
No 238
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.13 E-value=0.00024 Score=73.60 Aligned_cols=188 Identities=13% Similarity=0.060 Sum_probs=104.2
Q ss_pred CCCccEEEeccCCcccccccccccccccCCCceeeeCCcccccccccCCCcchhcchhhHhhh-ccccceeeecCCCCCC
Q 004225 91 FPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHVVTNKYHLGDERTILSLGDFLQR-LHTMKVLQIGGYSASL 169 (767)
Q Consensus 91 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~ 169 (767)
++..+.+++..|-.-... ..+....+++|++|++++|..... ....+...+.. .++|+.|.++++....
T Consensus 46 ~~~~~~lnl~~cl~e~~~--~~l~~~~~~~L~~L~Ls~n~l~~~--------~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 115 (372)
T 3un9_A 46 LPPSELLDHLFFHYEFQN--QRFSAEVLSSLRQLNLAGVRMTPV--------KCTVVAAVLGSGRHALDEVNLASCQLDP 115 (372)
T ss_dssp SCHHHHHHHHHHHHHHHT--HHHHHHHHTTCCEEECTTSCCCHH--------HHHHHHHHHSSCSSCEEEEECTTCCCCH
T ss_pred CChhhhHHHHHHHHHhcC--HHHHHHHHhhCCEEEecCCCCCHH--------HHHHHHHHHhhCCCCceEEEecCCCCCH
Confidence 455566666666432111 012223468899999998864211 11122222232 2588888888775211
Q ss_pred CcccccCCceeeeeecccccchhhccccccccccEEEecCCCccccccCC----C-CcCCCCCEEEeccCccchhhcCch
Q 004225 170 PYEKVENGMWVEIREAFHLEHILIRESSVTNNLVILRVKGCDHLVNLVPP----S-TSFQNLTNMVVSRCNNLKIVLTSL 244 (767)
Q Consensus 170 ~~~~~~~l~~l~i~~~~~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~----~-~~~~~L~~L~l~~c~~l~~~~~~~ 244 (767)
. ....+ ...+++|++|++++|..-...... . ...++|++|+|++|. +++.....
T Consensus 116 ~----------------~~~~l----~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~ 174 (372)
T 3un9_A 116 A----------------GLRTL----LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAV 174 (372)
T ss_dssp H----------------HHHHT----HHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHH
T ss_pred H----------------HHHHH----HHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHH
Confidence 0 01111 122467899999887432111111 1 235789999999985 54432221
Q ss_pred h---hhccccCcEEeEccccccchhc-----cccccccccccccccccceEeecCCCCcccccCC---CccccCCccceE
Q 004225 245 I---AKTLVRLRYMKIKSCDRITEIV-----QGDDVVAKDEVITFRELKELKLVDLERLTSFCSG---NCAFKFPSLERL 313 (767)
Q Consensus 245 ~---~~~l~~L~~L~i~~c~~l~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L 313 (767)
+ ....++|++|++++|. +.+.. ..... .++|+.|++++|. ++..... ......++|++|
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~--------~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L 244 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDR--------NRQLQELNVAYNG-AGDTAALALARAAREHPSLELL 244 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGG--------CSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhc--------CCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEE
Confidence 1 2457889999999886 44322 11112 5789999999873 4433211 111256899999
Q ss_pred eecCCC
Q 004225 314 VVDDCP 319 (767)
Q Consensus 314 ~i~~c~ 319 (767)
++.+|+
T Consensus 245 ~Ls~N~ 250 (372)
T 3un9_A 245 HLYFNE 250 (372)
T ss_dssp ECTTSS
T ss_pred eccCCC
Confidence 999985
No 239
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.13 E-value=0.015 Score=68.94 Aligned_cols=290 Identities=10% Similarity=0.057 Sum_probs=156.5
Q ss_pred CCHHHHHHHHHHHHHhc-CCC---hHHHHhcCchHHHHh-------hccCCCC--HHHHHHHHHHHHHHHhhhhHHHH--
Q 004225 371 DDSGLQLEATTWFRKLL-LPP---SEKVIQSGVVARFVE-------FLTREDN--PQLQLEAARALTNIASENTNVVI-- 435 (767)
Q Consensus 371 ~~~~~~~~a~~~L~~l~-~~~---~~~i~~~g~i~~L~~-------ll~~~~~--~~~~~~a~~~L~~l~~~~~~~~~-- 435 (767)
++++.+..|+..+..+. .+. ....+. .+++.++. .+..++. .+.....++.+..++..+...+.
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999888 222 111111 12233322 1233331 25666667777766642222221
Q ss_pred --h---------CCChHHHHHhhCC-----CCHHHHHHHHHHHHHHhcC---------CchhHHHHHh--cCCHHHHHHH
Q 004225 436 --D---------GGAVPIFVKLLSS-----PSDDVREKAVWALGNIARS---------SPRDRDLVLS--EKALIPLLAQ 488 (767)
Q Consensus 436 --~---------~~~l~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~---------~~~~~~~~~~--~g~i~~L~~l 488 (767)
+ ...++.++.+... .++++...+++.+..++.. .+.....+.. ...++.++..
T Consensus 335 ~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 414 (971)
T 2x1g_F 335 ITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK 414 (971)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1344555554433 4678889999988887641 1111111111 1244445555
Q ss_pred HccCCC--------------hHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcC-----CCHHHHHHHHHHHHhh
Q 004225 489 LNKHAK--------------PSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHS-----NDNDVLRYACEALSCL 549 (767)
Q Consensus 489 l~~~~~--------------~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l 549 (767)
+...++ .+.|+.+..++..++...+ ......+++.+...+.+ .+...++.++.+++.+
T Consensus 415 ~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~i 491 (971)
T 2x1g_F 415 SEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSV 491 (971)
T ss_dssp TSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHT
T ss_pred hcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 421111 1355667777777664422 22333444444444443 5778999999999999
Q ss_pred ccCChhHHHHHHhcCcHHHHHHHh---c--CCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhcc---CC
Q 004225 550 SDGTNDKIQAVIEADVCPRLVKLL---L--HPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITA---GN 621 (767)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~L~~lL---~--~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~---~~ 621 (767)
+++...... ..++.++.++ . +.++ .++..++|+++.++. ..
T Consensus 492 ae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~--------------------------~vr~~a~~~l~~~~~~l~~~ 540 (971)
T 2x1g_F 492 AEHFGGEEK-----RQIPRLMRVLAEIPYEKLNV--------------------------KLLGTALETMGSYCNWLMEN 540 (971)
T ss_dssp TTC-----------CHHHHHHHHHHHSCTTTSCH--------------------------HHHHHHHHHHHHTHHHHC--
T ss_pred HhhcChhhh-----HHHHHHHHHHHhcCccccCH--------------------------HHHHHHHHHHHHHHHHHhcC
Confidence 877543221 2233333322 2 1233 456666666666554 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC--CCHHHHHHHHHHH
Q 004225 622 REQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY--ADPEIVTICLKGL 699 (767)
Q Consensus 622 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~aL 699 (767)
++... .+++.++..+. +.|+..|++++.+++... .......+ ..++..+..++.. -+.+.+..+..++
T Consensus 541 ~~~l~-----~vl~~l~~~l~---~~v~~~A~~al~~l~~~~-~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai 610 (971)
T 2x1g_F 541 PAYIP-----PAINLLVRGLN---SSMSAQATLGLKELCRDC-QLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSI 610 (971)
T ss_dssp --CHH-----HHHHHHHHHHH---SSCHHHHHHHHHHHHHHC-HHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhC---hHHHHHHHHHHHHHHHHH-HHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 21111 24566777672 789999999999999753 33332222 2466777777776 3678899999999
Q ss_pred HHHHHh
Q 004225 700 ENILKV 705 (767)
Q Consensus 700 ~~l~~~ 705 (767)
..++..
T Consensus 611 ~~i~~~ 616 (971)
T 2x1g_F 611 GKLMSL 616 (971)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999874
No 240
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.13 E-value=0.0018 Score=58.48 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=72.0
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL 86 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (767)
..+++++++. .++.+|. .+ .++|++|+++++. +..+. +..+..+++|++|++++. +++.++...
T Consensus 10 ~~~~l~~s~n-~l~~ip~-~~---~~~l~~L~L~~N~-i~~~~--------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~- 73 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPT-GI---PTTTQVLYLYDNQ-ITKLE--------PGVFDRLTQLTRLDLDNN-QLTVLPAGV- 73 (170)
T ss_dssp ETTEEECTTS-CCSSCCS-CC---CTTCSEEECCSSC-CCCCC--------TTTTTTCTTCSEEECCSS-CCCCCCTTT-
T ss_pred CCCEEEeCCC-CcCccCc-cC---CCCCcEEEcCCCc-CCccC--------hhhhcCcccCCEEECCCC-CcCccChhh-
Confidence 4678888885 4677642 22 3779999998874 55441 234566889999999886 466666543
Q ss_pred cccCCCCccEEEeccCCcccccccccccccccCCCceeeeCCccc
Q 004225 87 DILEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHV 131 (767)
Q Consensus 87 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 131 (767)
...+++|++|+++++. ++...+..+ ..+++|+.|++++++.
T Consensus 74 -f~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 74 -FDKLTQLTQLSLNDNQ-LKSIPRGAF--DNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -TTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCB
T ss_pred -ccCCCCCCEEECCCCc-cCEeCHHHh--cCCCCCCEEEeCCCCC
Confidence 3468899999998874 444443334 3688899999988764
No 241
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0051 Score=60.74 Aligned_cols=185 Identities=14% Similarity=0.141 Sum_probs=126.4
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhc-CCCh----HHHH--hcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh----
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLL-LPPS----EKVI--QSGVVARFVEFLTREDNPQLQLEAARALTNIAS---- 428 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~----~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---- 428 (767)
.+| +-+.+.+.++..|..|+..+.++. .... +... -....+.+.+.+.+.+ ..++..|+.++..++.
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence 466 668899999999999999999887 2221 1111 1234556667777777 8999999999998876
Q ss_pred h--hh--HHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHH
Q 004225 429 E--NT--NVVIDGGAVPIFVK-LLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATK 503 (767)
Q Consensus 429 ~--~~--~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~ 503 (767)
. .+ ....-..++|.++. .+.+..+.++..|..++..++...... .. +++.++..+ .+.++.++..++.
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~ 161 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN 161 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence 1 11 11122346777776 578888999999988888877432211 11 235566666 8899999999999
Q ss_pred HHHhhcCCC--CCCC-ccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 004225 504 TLSRFCQGK--PEPP-FDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGT 553 (767)
Q Consensus 504 ~L~~l~~~~--~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 553 (767)
.|..+.... .... ......+++.+..++.+.|++||..|..++..+...-
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 998876542 1111 1223456667788889999999999999998876543
No 242
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.06 E-value=0.04 Score=65.21 Aligned_cols=104 Identities=10% Similarity=0.004 Sum_probs=72.0
Q ss_pred CHHHHHhhhc-CCCHHHHHHHHHHHHHhc-------CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hh
Q 004225 360 SLPGMLAGVW-SDDSGLQLEATTWFRKLL-------LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-EN 430 (767)
Q Consensus 360 ~i~~l~~~l~-s~~~~~~~~a~~~L~~l~-------~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~ 430 (767)
..+.+...+. +.++.++..|+..|++.. .+.....++..+++.+.+.- ... +.++...+.++..++. ++
T Consensus 58 ~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~-~~~-~~ir~kl~~~la~i~~~~~ 135 (963)
T 2x19_B 58 AWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFA-SGS-KIVLTRLCVALASLALSMM 135 (963)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTT-TSC-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHc-CCC-HHHHHHHHHHHHHHHHHhC
Confidence 3445555554 567899999999999887 23344555656666666532 234 7899999999999998 44
Q ss_pred hHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHHhc
Q 004225 431 TNVVIDGGAVPIFVKLLSS-----PSDDVREKAVWALGNIAR 467 (767)
Q Consensus 431 ~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~L~nl~~ 467 (767)
... -.+.++.++..+++ +++..+..++.+|..++.
T Consensus 136 p~~--Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e 175 (963)
T 2x19_B 136 PDA--WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE 175 (963)
T ss_dssp TTT--STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred ccc--cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence 322 24678888888876 366677788888887773
No 243
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.00 E-value=0.025 Score=59.04 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=21.5
Q ss_pred cccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecc
Q 004225 27 TVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMS 73 (767)
Q Consensus 27 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 73 (767)
.+.++.+|+++.+.+ +++.+. . .....+++|+++++.
T Consensus 66 AF~~c~~L~~i~lp~--~i~~I~----~----~aF~~c~~L~~i~lp 102 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS--TVREIG----E----FAFENCSKLEIINIP 102 (394)
T ss_dssp TTTTCTTEEEEECCT--TCCEEC----T----TTTTTCTTCCEECCC
T ss_pred HhhCCCCceEEEeCC--CccCcc----h----hHhhCCCCCcEEEeC
Confidence 456788888888753 355441 0 122335677777764
No 244
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.98 E-value=0.0018 Score=58.53 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=63.6
Q ss_pred CCCccEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCC
Q 004225 5 IQNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTG 84 (767)
Q Consensus 5 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (767)
.++|++|+++++. ++.+++ ..+..+++|++|+++++. +..+. +.....+++|++|++++. +++.++..
T Consensus 29 ~~~l~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~--------~~~f~~l~~L~~L~L~~N-~l~~~~~~ 96 (170)
T 3g39_A 29 PTTTQVLYLYDNQ-ITKLEP-GVFDRLTQLTRLDLDNNQ-LTVLP--------AGVFDKLTQLTQLSLNDN-QLKSIPRG 96 (170)
T ss_dssp CTTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSSC-CCCCC--------TTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCcEEEcCCCc-CCccCh-hhhcCcccCCEEECCCCC-cCccC--------hhhccCCCCCCEEECCCC-ccCEeCHH
Confidence 4689999999974 677633 445689999999999885 66541 123456899999999986 57666654
Q ss_pred CCcccCCCCccEEEeccCC
Q 004225 85 DLDILEFPSLKELRISKCP 103 (767)
Q Consensus 85 ~~~~~~~~~L~~L~l~~c~ 103 (767)
. ...+++|+.|++++.+
T Consensus 97 ~--~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 97 A--FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp T--TTTCTTCCEEECCSSC
T ss_pred H--hcCCCCCCEEEeCCCC
Confidence 3 3568999999998865
No 245
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.83 E-value=0.0021 Score=58.32 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=31.0
Q ss_pred ccccEEEecCCCcccccc-CCCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhc
Q 004225 200 NNLVILRVKGCDHLVNLV-PPSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIV 267 (767)
Q Consensus 200 ~~L~~L~i~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 267 (767)
++|++|++++.. +..+. .....+++|++|+|+++ .++.++.. .+..+++|++|+++++. ++.++
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L~~N~-l~~l~ 97 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTG-VFDKLTQLTQLDLNDNH-LKSIP 97 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCC
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChh-HhCCcchhhEEECCCCc-cceeC
Confidence 556666665543 22222 22445566666666554 34444332 23345566666665543 44443
No 246
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.82 E-value=0.0046 Score=63.42 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=73.7
Q ss_pred cEEeeecCCCccccccCccccCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCCcc
Q 004225 9 TRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDLDI 88 (767)
Q Consensus 9 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (767)
..+++.+...++.+|. +..+.+|++|++++...+..+. +..+..+++|+.|+|++. +++.++... .
T Consensus 11 ~~v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~--------~~~~~~l~~L~~L~l~~N-~l~~~~~~~--~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLE--------LRDLRGLGELRNLTIVKS-GLRFVAPDA--F 76 (347)
T ss_dssp SCEECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEEC--------GGGSCSCCCCSEEECCSS-CCCEECTTG--G
T ss_pred CEEEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcC--------hhHhccccCCCEEECCCC-ccceeCHHH--h
Confidence 3556666546777755 4688899999998744677662 134667899999999987 577776543 4
Q ss_pred cCCCCccEEEeccCCcccccccccccccccCCCceeeeCCccc
Q 004225 89 LEFPSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKHV 131 (767)
Q Consensus 89 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 131 (767)
..+++|+.|+++++. +....+..+. .++ |+.|++.+++.
T Consensus 77 ~~l~~L~~L~l~~N~-l~~~~~~~~~--~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNA-LESLSWKTVQ--GLS-LQELVLSGNPL 115 (347)
T ss_dssp GSCSCCCEEECCSSC-CSCCCSTTTC--SCC-CCEEECCSSCC
T ss_pred cCCcCCCEEeCCCCc-cceeCHHHcc--cCC-ceEEEeeCCCc
Confidence 578999999999864 4444433342 233 99999998764
No 247
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.80 E-value=0.091 Score=62.12 Aligned_cols=138 Identities=13% Similarity=0.142 Sum_probs=91.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHH
Q 004225 408 TREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLL---SSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIP 484 (767)
Q Consensus 408 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~ 484 (767)
.+.+ ...+..|+++++.++..... .....++.++..+ .++++.++..++|+++.++..-....+.+ ..+++.
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~--~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~ 533 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDV--NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPL 533 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCS--SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHH
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCc--hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHH
Confidence 3444 78899999999999881000 0123344455443 33578899999999999985322112222 358888
Q ss_pred HHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcC--CCHHHHHHHHHHHHhhccCC
Q 004225 485 LLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHS--NDNDVLRYACEALSCLSDGT 553 (767)
Q Consensus 485 L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~ 553 (767)
++..+ .+ +.++..|++++.+++......-.-....++..+..++.. -+.+.+..++.+++.++...
T Consensus 534 l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 534 VLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 88888 43 789999999999999653221222345666666677765 35788888899998887644
No 248
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.79 E-value=0.027 Score=65.96 Aligned_cols=318 Identities=10% Similarity=0.029 Sum_probs=173.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCch--hHHHHHhcCCHHH
Q 004225 408 TREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPR--DRDLVLSEKALIP 484 (767)
Q Consensus 408 ~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~~~~~~~~g~i~~ 484 (767)
.+.+ +.+...+..++..... -....++..+.++.+..+|.+ ++++..|+.+|..+...... .+..++.. + .
T Consensus 203 ~~~~-~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~--l-~ 276 (980)
T 3ibv_A 203 NAKN-YGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNI--L-N 276 (980)
T ss_dssp HTTC-HHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--H-H
T ss_pred ccCC-HHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHH--H-h
Confidence 3355 7888889999988888 445666677788888888864 88999999999999865432 22222221 1 1
Q ss_pred HHHHHc---c-CCChHHHHHHHHHHHhhc------CCCCC-CC-------ccchhchHHHHHHHhcCCCHHHHHHHHHHH
Q 004225 485 LLAQLN---K-HAKPSMLRNATKTLSRFC------QGKPE-PP-------FDQVRPALPALAQLVHSNDNDVLRYACEAL 546 (767)
Q Consensus 485 L~~ll~---~-~~~~~~~~~~~~~L~~l~------~~~~~-~~-------~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 546 (767)
+...+. . ..|.+..+..+..+..+. ...+. .. .....+.++.++.++.+++.++...++..+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 122221 1 466776654444432221 11111 00 133457889999999999888887776666
Q ss_pred HhhccC-----C----hhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccC-CcceeehhhhHHHHHHHhh
Q 004225 547 SCLSDG-----T----NDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGD-GFLTQCTGIAKEACRTISN 616 (767)
Q Consensus 547 ~~l~~~-----~----~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~v~~~a~~~l~n 616 (767)
..+... . .+....+.. .+++.+++-++.++. +--. ..++ ++..+..+.|+.....+..
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d--~~~~---------~~~d~ed~~~F~e~Rk~l~~l~d~ 424 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDES--QEWD---------DDPDSEEEAEFQEMRKKLKIFQDT 424 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTT--CCCC---------CCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCc--cccc---------cccchhHHHHHHHHHHHHHHHHHH
Confidence 554421 0 112222221 356666666666543 1000 0001 1112222556665533333
Q ss_pred hccCCHHH-HHHHHHcCCHHHHHHHHh---cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHc----CChHHHHhhhc---
Q 004225 617 ITAGNREQ-IQVVIDAGVIGPLVDLLQ---NAEFFTKKEAARAISNAISGGTHEQIKYLVRK----GCIKPLCDLLL--- 685 (767)
Q Consensus 617 l~~~~~~~-~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~----~~i~~L~~ll~--- 685 (767)
++.-.++. ...+.+ -+.+.+-+.+. +.++..++.|..+++.++.+........--.. .+++.+..+++
T Consensus 425 ~~~l~~~~~l~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i 503 (980)
T 3ibv_A 425 INSIDSSLFSSYMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQV 503 (980)
T ss_dssp HHHHCHHHHHHHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSST
T ss_pred HHhcChHHHHHHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCC
Confidence 33322332 221211 12222333332 34578899999999999876422111000000 13345555554
Q ss_pred --CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHH--HhcCCChHHHHHHHHHHHHhcC
Q 004225 686 --YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIED--LKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 686 --~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~--l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
...+.|+..+++++.++...-... ++ +... .++.+.. -+.++++.|+.+|..++.+|-.
T Consensus 504 ~~~~hp~V~~~~~~~l~rys~~~~~~---------~~-~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 504 CRHPHPLVQLLYMEILVRYASFFDYE---------SA-AIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp TTCCCHHHHHHHHHHHHHTGGGGGTC---------CT-THHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcC---------ch-hHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 678899999999999998754321 11 1111 1233333 4457888999999999988754
No 249
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.73 E-value=0.52 Score=55.15 Aligned_cols=294 Identities=12% Similarity=0.120 Sum_probs=156.5
Q ss_pred CCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHH-HhhccCCCCHHHHHHHHHHHHHHHh----hhhHHHH--hCCChH
Q 004225 370 SDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARF-VEFLTREDNPQLQLEAARALTNIAS----ENTNVVI--DGGAVP 441 (767)
Q Consensus 370 s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L-~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~--~~~~l~ 441 (767)
+.++++...++..++.+. ..+...+++.++++.+ ...+. + ++.+..|+.+|..+.. ++...+. -.+++.
T Consensus 218 ~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~ 294 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMM 294 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 567788888999999998 4567888899999988 46664 3 7899999999999987 1122211 011121
Q ss_pred HHHHhh-------------CCCCHHHHHHHHHHHHHHhc-------CCchhHHHHHhcCCHHHHHHHHccCCChHHHHHH
Q 004225 442 IFVKLL-------------SSPSDDVREKAVWALGNIAR-------SSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNA 501 (767)
Q Consensus 442 ~L~~lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~ 501 (767)
.+..++ ...|.+....-+..+..+.. ..++.+..+.. ++..++.+- ..++.++.+.+
T Consensus 295 ~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~kit 371 (1073)
T 3gjx_A 295 QLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIFKIC 371 (1073)
T ss_dssp HHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHHHHH
T ss_pred HHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHHHHH
Confidence 121222 11233443444445544442 11111111111 233344444 56788888776
Q ss_pred HHHHHhhcC----CCCC---C--------------CccchhchHHHHHH----HhcCC-------------------C-H
Q 004225 502 TKTLSRFCQ----GKPE---P--------------PFDQVRPALPALAQ----LVHSN-------------------D-N 536 (767)
Q Consensus 502 ~~~L~~l~~----~~~~---~--------------~~~~~~~~i~~L~~----ll~~~-------------------~-~ 536 (767)
...=..+.. ..+. . ......+++..|.. -+..+ | .
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 655333321 1110 0 00112223333332 22211 1 0
Q ss_pred -----HHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCC--CCCCcccchHHHHHhhhhccCCcceeehhhhHH
Q 004225 537 -----DVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHP--LPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKE 609 (767)
Q Consensus 537 -----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~ 609 (767)
++.++++..+.++.. .+.... ..+.+.+.+... ++ .....
T Consensus 452 ~~~ly~~mrd~L~~lt~l~~--~~~~~i-----~~~~l~~~~~~~~~sW--------------------------~~lea 498 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLTHLDY--VDTEII-----MTKKLQNQVNGTEWSW--------------------------KNLNT 498 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCH--HHHHHH-----HHHHHHHHHTSCCCCH--------------------------HHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCH--HHHHHH-----HHHHHHHHhcCCCCCH--------------------------HHHhH
Confidence 122333322322221 112111 334444444432 23 56778
Q ss_pred HHHHHhhhccCCHH--HHHHHHHcCCHHHHHHHHhcCC-----chhHHHHHHHHHHhhcCC--CHHHHHHHHHcCChHHH
Q 004225 610 ACRTISNITAGNRE--QIQVVIDAGVIGPLVDLLQNAE-----FFTKKEAARAISNAISGG--THEQIKYLVRKGCIKPL 680 (767)
Q Consensus 610 a~~~l~nl~~~~~~--~~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~nl~~~~--~~~~~~~l~~~~~i~~L 680 (767)
++|+++.++..-.+ ....+. .+++.|+.+.+... ..++...+|+++.....- .++.... ++..|
T Consensus 499 ~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L 571 (1073)
T 3gjx_A 499 LCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKL 571 (1073)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHH
T ss_pred HHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHH
Confidence 88888888763222 222222 36777777776552 235555668888765431 2333222 67788
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 004225 681 CDLLLYADPEIVTICLKGLENILKVGEAE 709 (767)
Q Consensus 681 ~~ll~~~~~~v~~~al~aL~~l~~~~~~~ 709 (767)
++.+.+.++.++.+|+.|+..++......
T Consensus 572 ~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 572 FEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999876554
No 250
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.73 E-value=0.044 Score=64.27 Aligned_cols=363 Identities=9% Similarity=0.041 Sum_probs=179.9
Q ss_pred CCHHHHHHHHHHHHHhc-CCCh--HHHHhcCchHHHHhhccCC---C-CHHHHHHHHHHHHHHHh---hhhHHHHhCCCh
Q 004225 371 DDSGLQLEATTWFRKLL-LPPS--EKVIQSGVVARFVEFLTRE---D-NPQLQLEAARALTNIAS---ENTNVVIDGGAV 440 (767)
Q Consensus 371 ~~~~~~~~a~~~L~~l~-~~~~--~~i~~~g~i~~L~~ll~~~---~-~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l 440 (767)
.+...+.+++.+++.++ .... ..-.-..+++.|+.++.+. + ...++..++|+++.++. .+.+.+ ..++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 57899999999999999 3222 2222335677788877531 1 12344457799998888 333322 2456
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh------cCCHHHHHHHHc---cCCChHHHHHHHHHHHhhcCC
Q 004225 441 PIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLS------EKALIPLLAQLN---KHAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 441 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~ 511 (767)
+.++..+.++++.++..|++++.+++.. +++.+.. ...++.+++.+. ..-+...+..+..+++.+...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 6777777778899999999999999953 4444432 112343333321 445677778888999998877
Q ss_pred CCCCC--ccchhchHHHHH----HHhc----CC----C---HHHHHHHHHHHHhhccCChh-HHHHHHhcCcHHHHHHHh
Q 004225 512 KPEPP--FDQVRPALPALA----QLVH----SN----D---NDVLRYACEALSCLSDGTND-KIQAVIEADVCPRLVKLL 573 (767)
Q Consensus 512 ~~~~~--~~~~~~~i~~L~----~ll~----~~----~---~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL 573 (767)
.+... .......++.+. ++.. +. | .......+.++..++..-.. ....+. .+.+.++++.
T Consensus 620 ~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~--~i~~~~l~~y 697 (1023)
T 4hat_C 620 ERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG--HIYYNMLQLY 697 (1023)
T ss_dssp CCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHH
T ss_pred CCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH--HHHHHHHHHH
Confidence 54221 112222222222 2221 11 1 12233344444444422111 111111 2334444333
Q ss_pred cCCCCCCcccchHHHHHhhhhccCCcceeeh-hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHh----cC----
Q 004225 574 LHPLPFPFGLTPPLWTVRYIVKGDGFLTQCT-GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQ----NA---- 644 (767)
Q Consensus 574 ~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~----~~---- 644 (767)
+..+. ....+++.=|..+...+.. ..+ .++++.+..+...+...++ . ..+....++++++.+- ..
T Consensus 698 ~~~s~---~i~~~~~~~g~~~~~~~~~-r~~r~ik~~il~l~~~~i~~~~~-~-~~~~~~~~~~l~~~vl~dY~~~~~~~ 771 (1023)
T 4hat_C 698 RAVSS---MISAQVAAEGLIATKTPKV-RGLRTIKKEILKLVETYISKARN-L-DDVVKVLVEPLLNAVLEDYMNNVPDA 771 (1023)
T ss_dssp HHHHH---HHHHHHHHHCGGGGGSHHH-HHHHHHHHHHHHHHHHHHHHCSC-H-HHHHHHTHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHH---HHHHHHHhCCchhhccHHH-HHHHHHHHHHHHHHHHHHhcCCC-H-HHHHHHhHHHHHHHHHHHHHhCChhh
Confidence 22211 1111111101111000000 000 3455555555444431111 0 1223345666655432 22
Q ss_pred -CchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC---CCHHHHHHHHHHHHHHHHhhhhhhccCCcccccc
Q 004225 645 -EFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY---ADPEIVTICLKGLENILKVGEAEMNTGTANRYFN 720 (767)
Q Consensus 645 -~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~ 720 (767)
++.+-.-....+..+... -.+....+.+. ++++-+++++. ..|+.|..--..+.++....-..--. -+.
T Consensus 772 r~~~vL~l~s~iv~~~~~~-~~~~~~~il~~-vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~-----~~~ 844 (1023)
T 4hat_C 772 RDAEVLNCMTTVVEKVGHM-IPQGVILILQS-VFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLE-----LPP 844 (1023)
T ss_dssp CCHHHHHHHHHHHHHHGGG-CHHHHHHHHHH-HHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHT-----SCH
T ss_pred ccHHHHHHHHHHHHHHHHh-hhhhhHHHHHH-HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHc-----CCH
Confidence 344544444444555433 24444444443 66666677764 57888888777777776643211100 001
Q ss_pred HHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 004225 721 HYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYW 758 (767)
Q Consensus 721 ~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 758 (767)
..... .++.+.-=..|+++++.+.+.+++..++
T Consensus 845 ~~~~~-----~~~~~~~a~~h~~r~~~~~~l~~~~~ll 877 (1023)
T 4hat_C 845 AAFKL-----FVDAICWAFKHNNRDVEVNGLQIALDLV 877 (1023)
T ss_dssp HHHHH-----HHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 11111 2444554567888888777777776554
No 251
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.69 E-value=0.012 Score=68.89 Aligned_cols=303 Identities=9% Similarity=-0.003 Sum_probs=159.4
Q ss_pred CCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-----hhhHHHHhCCChHHH
Q 004225 370 SDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-----ENTNVVIDGGAVPIF 443 (767)
Q Consensus 370 s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-----~~~~~~~~~~~l~~L 443 (767)
+.++.+...++..+.... ..+...++..+.++.+++++.. ++++..|+.+|..+.. +.+..++..=.+...
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~ 280 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLF 280 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHH
Confidence 467888889999999998 5567788888899999999875 6899999999999998 222222221011222
Q ss_pred HHhhC--CCCHHHHHHHHHHHHHHh------cCCc-----hhHHHH--HhcCCHHHHHHHHccCCChHHHHHHHHHHHhh
Q 004225 444 VKLLS--SPSDDVREKAVWALGNIA------RSSP-----RDRDLV--LSEKALIPLLAQLNKHAKPSMLRNATKTLSRF 508 (767)
Q Consensus 444 ~~lL~--~~~~~v~~~a~~~L~nl~------~~~~-----~~~~~~--~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 508 (767)
+..+. ..|.+.....+..+..++ ...+ +.+... .-.+.++.++..+ .+++.++...+...+..+
T Consensus 281 ~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 281 FSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHHHHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHH
Confidence 22222 367776554444443332 1111 111000 1124788888888 777888877777666655
Q ss_pred cCCC---CC--CCccc----hhchHHHHHHHhcCC-C---------------HHHHHHHHHHHHhhccCChhHHHH-HHh
Q 004225 509 CQGK---PE--PPFDQ----VRPALPALAQLVHSN-D---------------NDVLRYACEALSCLSDGTNDKIQA-VIE 562 (767)
Q Consensus 509 ~~~~---~~--~~~~~----~~~~i~~L~~ll~~~-~---------------~~v~~~a~~~L~~l~~~~~~~~~~-~~~ 562 (767)
.... +. ..... ....++.++.-++-+ + .+.|+.....+..++.-.++..-. +.+
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~ 439 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYS 439 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4321 11 01111 223334444333311 0 123333332222222212211111 100
Q ss_pred cCcHHHHHHHhc---CCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHH-Hc----CCH
Q 004225 563 ADVCPRLVKLLL---HPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVI-DA----GVI 634 (767)
Q Consensus 563 ~~~~~~L~~lL~---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~-~~----~~i 634 (767)
-+.+.+.+.+. +.++ ..++.|+++++.++.+.......+. +. .++
T Consensus 440 -~i~~~l~~~l~~~~~~~W--------------------------~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 440 -AITSSLSTAATLSPENSW--------------------------QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp -HHHHHHHHHTTSCHHHHH--------------------------HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred -HHHHHHHHHhcccCCCCH--------------------------HHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 11122222222 1122 3455566666655553211000000 00 134
Q ss_pred HHHHHHHh-----cCCchhHHHHHHHHHHhhcCCC--HHHHHHHHHcCChHHHHh--hhcCCCHHHHHHHHHHHHHHHHh
Q 004225 635 GPLVDLLQ-----NAEFFTKKEAARAISNAISGGT--HEQIKYLVRKGCIKPLCD--LLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 635 ~~L~~ll~-----~~~~~v~~~a~~~L~nl~~~~~--~~~~~~l~~~~~i~~L~~--ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
+.+..+++ ...+.|+..++++++..+.... ++.... ++..+++ -+.++++.++.+|..++.++++.
T Consensus 493 ~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 493 QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 55666655 5678999999999999876421 121111 3444444 44567889999999999999987
Q ss_pred hhh
Q 004225 706 GEA 708 (767)
Q Consensus 706 ~~~ 708 (767)
...
T Consensus 568 ~~~ 570 (980)
T 3ibv_A 568 IKK 570 (980)
T ss_dssp TTT
T ss_pred hhH
Confidence 554
No 252
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.61 E-value=0.045 Score=56.92 Aligned_cols=254 Identities=12% Similarity=0.058 Sum_probs=157.9
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 360 SLPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 360 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
-...++..|-++.+++|.-|+..|+.+...... ..|.. ...+ . ..|++.+..++-
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~---GAGR~-------~~~N-~---DLAvRLLCVLAL----------- 229 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDN---GGDIQ-------IRVD-S---KLFSKIYEILVT----------- 229 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-------CC-------CCCC-T---THHHHHHHHHHH-----------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhcc---CCcee-------cccc-H---HHHHHHHHHHHh-----------
Confidence 556667777788888888888888875522111 01111 1122 1 345555554442
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCcc
Q 004225 440 VPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFD 518 (767)
Q Consensus 440 l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 518 (767)
..+-.+..+ --..||+.|+.+|+.+ ..-+.. ..++..++..+ ..+..+++..++-.|..+ .+- ..
T Consensus 230 -DRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DL--L~-- 295 (800)
T 3oc3_A 230 -DKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEF--VE-- 295 (800)
T ss_dssp -BCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGG--CC--
T ss_pred -ccccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHH--HH--
Confidence 122222333 2257999999999998 554432 33455555555 677899999999999988 111 11
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHH---HHhhhhc
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLW---TVRYIVK 595 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~---~L~~l~~ 595 (767)
...++++.++..+++.|.+|+..|+.+|.-++ .++.... ++..+...|.+.| ++-..... .|+.+..
T Consensus 296 ~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~-----LL~iLWd~L~~LD---DLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 296 DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDL-----VLEKCWKNIESEE---LISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHH-----HHHHHHHHHHTCC---SCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHH-----HHHHHHHHhhhhc---ccchhhHHHHHHHHHHHc
Confidence 16788999999999999999999999999999 3333332 5667777777764 33333332 3333322
Q ss_pred cCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 004225 596 GDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKG 675 (767)
Q Consensus 596 ~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~ 675 (767)
.+. .+... ...+|.|...+.+.-+.||..+..++..+. +.+..+-+.+
T Consensus 366 ~p~------------------~a~~d---------p~LVPRL~PFLRHtITSVR~AVL~TL~tfL---~~~~LRLIFQ-- 413 (800)
T 3oc3_A 366 ENP------------------ELSIP---------PERLKDIFPCFTSPVPEVRTSILNMVKNLS---EESIDFLVAE-- 413 (800)
T ss_dssp HCT------------------TCCCC---------SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC---CHHHHHHHHH--
T ss_pred CCc------------------ccccC---------hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH---hhhHHHHHHH--
Confidence 111 11111 257899999999999999999999988877 2333332222
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLE 700 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~ 700 (767)
.++-+.+++++..+..+-.
T Consensus 414 ------NILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 414 ------VVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ------HHHHCSCHHHHHHHHHHHH
T ss_pred ------HHHhCCcHHHHHHHHHHHH
Confidence 2445678888887766553
No 253
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.038 Score=54.36 Aligned_cols=194 Identities=10% Similarity=0.045 Sum_probs=118.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCChhHH-H-HHH--hcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCccee
Q 004225 527 LAQLVHSNDNDVLRYACEALSCLSDGTNDKI-Q-AVI--EADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQ 602 (767)
Q Consensus 527 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~-~~~--~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 602 (767)
+-.-+.+.+...|..++..+..+....+... . ... -....+.+.+.+.+.+. .++..++.++..++......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~--~v~~~al~~l~~~~~~~~~~-- 89 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV--VAQEQAIVALNSLIDAFASS-- 89 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH--HHHHHHHHHHHHHHTTCC----
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHhhhh--
Confidence 4567889999999999999988775433211 1 111 12356677788888877 55555555554443211100
Q ss_pred ehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHH-HhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 004225 603 CTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDL-LQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLC 681 (767)
Q Consensus 603 ~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~ 681 (767)
........ ..-..+++.+++= +.+....++..|..++..++....+. .. +++.+.
T Consensus 90 ----------------~~~~~~~~-~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~-----~~e~l~ 145 (278)
T 4ffb_C 90 ----------------SLKNAHNI-TLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQ-----SVELVI 145 (278)
T ss_dssp -----------------CCHHHHH-HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HH-----HHHHHG
T ss_pred ----------------hcccchhH-HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HH-----HHHHHH
Confidence 00111111 1112355666653 56677788888888887776432211 11 346677
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 682 DLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 682 ~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
..+++.+|.++..++..|.+++...+.... + ....+ ..+++.+..++++.+++||+.|..++-.+|.
T Consensus 146 ~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~--------~-~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCVYELMAAFGLTNV--------N-VQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHHHHHTTTTC--------C-HHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHhCCCcC--------C-chhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 788899999999999999999875332111 0 11111 1235667788899999999999999988875
No 254
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.50 E-value=0.0057 Score=62.71 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=63.3
Q ss_pred cccchhhccccccccccEEEecCCCccccccC-CCCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccch
Q 004225 187 HLEHILIRESSVTNNLVILRVKGCDHLVNLVP-PSTSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITE 265 (767)
Q Consensus 187 ~l~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 265 (767)
++..+ +. ...+++|++|++++.+.+..+++ .+..+++|+.|+|+++ .++.+++.. +.++++|++|+++++. +..
T Consensus 20 ~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~ 94 (347)
T 2ifg_A 20 ALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFNA-LES 94 (347)
T ss_dssp CCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSSC-CSC
T ss_pred CCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCCc-cce
Confidence 45554 22 55567899999987666766554 3567889999999887 566665543 4678899999998754 666
Q ss_pred hccccccccccccccccccceEeecCC
Q 004225 266 IVQGDDVVAKDEVITFRELKELKLVDL 292 (767)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~L~~L~l~~~ 292 (767)
++..... ..+|+.|.+.+.
T Consensus 95 ~~~~~~~--------~~~L~~l~l~~N 113 (347)
T 2ifg_A 95 LSWKTVQ--------GLSLQELVLSGN 113 (347)
T ss_dssp CCSTTTC--------SCCCCEEECCSS
T ss_pred eCHHHcc--------cCCceEEEeeCC
Confidence 6654432 233888888764
No 255
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.31 E-value=0.25 Score=48.34 Aligned_cols=198 Identities=12% Similarity=0.106 Sum_probs=140.9
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChh----HHHHHHh-cCcHHHHHHHhcCCCCCCcccchHHHHHhhhhc
Q 004225 521 RPALPALAQLVHSNDNDVLRYACEALSCLSDGTND----KIQAVIE-ADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 521 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~-~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~ 595 (767)
.+.+..|+..+..-+.+.+.++..++.++.+.... ....+.. ..++..|+..-.+++. ..
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~di----Al----------- 141 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEI----AL----------- 141 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTT----HH-----------
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchh----Hh-----------
Confidence 46888899999999999999999999999876542 2333332 2233333333333322 11
Q ss_pred cCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH--
Q 004225 596 GDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR-- 673 (767)
Q Consensus 596 ~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~-- 673 (767)
.|+.+-.-+...+...+.++..+.+..+++.++.+++++...|..++..+...+..-...++..
T Consensus 142 --------------~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~ny 207 (341)
T 1upk_A 142 --------------NCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHY 207 (341)
T ss_dssp --------------HHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTH
T ss_pred --------------HHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhH
Confidence 1222222333346667778888889999999999999999999999999987643333333333
Q ss_pred cCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHH
Q 004225 674 KGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKI 753 (767)
Q Consensus 674 ~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~ 753 (767)
..++.....++.+++.-++.+++..|..++..-.+.. ...+.+....-+..+..++.+++..++-.|-++
T Consensus 208 d~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~----------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhV 277 (341)
T 1upk_A 208 DRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHV 277 (341)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHH----------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhh
Confidence 2567778889999999999999999999998655433 245556666678888899999999999888888
Q ss_pred HHHh
Q 004225 754 LEIY 757 (767)
Q Consensus 754 l~~~ 757 (767)
..-|
T Consensus 278 FKvF 281 (341)
T 1upk_A 278 FKVF 281 (341)
T ss_dssp HHHH
T ss_pred eeee
Confidence 7644
No 256
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.30 E-value=0.028 Score=53.88 Aligned_cols=178 Identities=13% Similarity=0.097 Sum_probs=122.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHh-cC-chHHHHhhccCCCCHHHHHHHHHHHHHHHh---h--h--h
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQ-SG-VVARFVEFLTREDNPQLQLEAARALTNIAS---E--N--T 431 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~-~g-~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~--~--~ 431 (767)
=+.+...+-+.|...+.+|+..|....+...+.++. .+ +++.+.--+.+.+ +.+...++.+|..+.. + + .
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhccccch
Confidence 345667777889999999999999877323333322 11 1222221223455 8898899998888766 1 1 1
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCC
Q 004225 432 NVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 511 (767)
..- ..-.+|.|+.-+.++...+|..+-.++..+....+. ..+.+.+++-+ .+.+..++..++..+..+...
T Consensus 127 ~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~-ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 127 QEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDAL-KSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHh
Confidence 111 123679999988888899999888888777642221 12457777877 889999999999999888655
Q ss_pred CCCCCccchhchH---HHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 004225 512 KPEPPFDQVRPAL---PALAQLVHSNDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 512 ~~~~~~~~~~~~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 552 (767)
.... ...++ |.+..++.+.|..||..|+.++..+-..
T Consensus 198 ~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 198 AGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3111 24567 9999999999999999999999865533
No 257
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.29 E-value=0.13 Score=47.92 Aligned_cols=202 Identities=13% Similarity=0.078 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHhhccCChhHHHHHHhc-CcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhh-HHHHH
Q 004225 535 DNDVLRYACEALSCLSDGTNDKIQAVIEA-DVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIA-KEACR 612 (767)
Q Consensus 535 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~-~~a~~ 612 (767)
+++.|+.|+.-|+.=-+.-++-...+..+ |.+..+++-+-+--+ .+. ++.......-| ..|+.
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp--~ls-------------pp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYP--SIN-------------PPTLTAHQSNRVCNALA 78 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGG--GBT-------------TBCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcc--cCC-------------CcccCHHHHhHHHHHHH
Confidence 34457888777777555555554445443 555555443332221 100 00000000122 22333
Q ss_pred HHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCC-----chhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC
Q 004225 613 TISNITAGNREQIQVVIDAGVIGPLVDLLQNAE-----FFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA 687 (767)
Q Consensus 613 ~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 687 (767)
.+..++ ..++.+..++++++.-.|...+...+ ..+|-.+..+++.++...+++.+.++++.++++...+.++.+
T Consensus 79 LlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 79 LLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence 334444 45777888999998888888888654 368999999999999888999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 688 DPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 688 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
+.--+..|...+..++.+.....-..+ ..+.+.+...-. -..+.++..++++++-+..+.+.-++
T Consensus 158 selSKtvAtfIlqKIL~dd~GL~YiC~---t~eRF~av~~vL--~~mV~~l~~~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 158 SELSKTVATFILQKILLDDTGLAYICQ---TYERFSHVAMIL--GKMVLQLSKEPSARLLKHVVRCYLRL 222 (268)
T ss_dssp CHHHHHHHHHHHHHHHHSHHHHHHHTS---SHHHHHHHHHHH--HHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHHc---cHHHHHHHHHHH--HHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 999999999999999876544332222 111111111111 12334556778887766555444433
No 258
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.20 E-value=0.33 Score=50.36 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=26.0
Q ss_pred CccEEeeecCCCccccccCccccCcCCCceeeeecc--CCcceE
Q 004225 7 NLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVGC--PVLEEL 48 (767)
Q Consensus 7 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~--~~l~~~ 48 (767)
.|+.+.+.+ .++.+ ....+.++.+|+.+.+.+. ..++.+
T Consensus 65 ~L~sI~iP~--svt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~I 105 (394)
T 4gt6_A 65 VLTSVQIPD--TVTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKI 105 (394)
T ss_dssp CCCEEEECT--TCCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEE
T ss_pred cCEEEEECC--CeeEE-hHHHhhCCccCceEeecCCCCCeeeEe
Confidence 488888865 36666 3444578899999988654 235544
No 259
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.19 E-value=0.43 Score=46.28 Aligned_cols=291 Identities=15% Similarity=0.129 Sum_probs=170.0
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhh
Q 004225 429 ENTNVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRF 508 (767)
Q Consensus 429 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 508 (767)
...+.+++.+++..+...+.-++.++.......|-..+....-+..- -...++.++..+..+++.++...+.+.++|.
T Consensus 275 nAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~eDdvvYSGTGFLSNV 352 (619)
T 3c2g_A 275 DAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPDDEVIYSGTGFLSNV 352 (619)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCCcceEEecchHHHHH
Confidence 55778889999999999999999999999999988888543322111 1236788888888899999999999999999
Q ss_pred cCCC-CCCCccchhchHHHHHHHhcC-------CCHHHHHHHHHHHH-------hhc------cC------Chh---HHH
Q 004225 509 CQGK-PEPPFDQVRPALPALAQLVHS-------NDNDVLRYACEALS-------CLS------DG------TND---KIQ 558 (767)
Q Consensus 509 ~~~~-~~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~-------~l~------~~------~~~---~~~ 558 (767)
..+. +........++++.|-..+.. .+..-+..+|.+++ |.. .+ .+. +..
T Consensus 353 VAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G~~EqQQVc 432 (619)
T 3c2g_A 353 VAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAGPNEKQQVC 432 (619)
T ss_dssp STTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCCHHHHHHHH
T ss_pred HhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCChHHHHHHH
Confidence 9887 555566678899988877642 23333444444444 431 00 112 222
Q ss_pred HHHhcCcHHHHHHHhcCCCCC----CcccchHHHHHhhhhccCCcceeeh--------------hhhHHHHHHHhhhcc-
Q 004225 559 AVIEADVCPRLVKLLLHPLPF----PFGLTPPLWTVRYIVKGDGFLTQCT--------------GIAKEACRTISNITA- 619 (767)
Q Consensus 559 ~~~~~~~~~~L~~lL~~~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l--------------~v~~~a~~~l~nl~~- 619 (767)
.+++.+++..++..|+-+... -+++...++.+.-+...+.-..+.+ .+..+-+|+.+.-..
T Consensus 433 kFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~sWa~~Q~tNe 512 (619)
T 3c2g_A 433 KFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYSWVFRQPNNT 512 (619)
T ss_dssp GGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHHHHHHSCCCT
T ss_pred HHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHHHhhcCcccc
Confidence 344456788888888776550 1223444444433332221111111 334445566665444
Q ss_pred CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCC--CHHHHHHHHH
Q 004225 620 GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYA--DPEIVTICLK 697 (767)
Q Consensus 620 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~ 697 (767)
...+..+.+++ .++..|+.+++.--.+.+. +.. .-.+..=..+++.. .|.....++.
T Consensus 513 rtqdTkqQLiE-R~fSLL~~LmEQc~~E~qV--Ah~------------------~YsIsCPLnlLn~nQ~KP~FI~NVL~ 571 (619)
T 3c2g_A 513 RTQSTKQQLVE-RTISLLLVLMEQCGAEKEV--AQY------------------SYSIDCPLNLLNGNQVKPTFIHNVLV 571 (619)
T ss_dssp TTHHHHHHHHH-HHHHHHHHHHHHTTCHHHH--HHT------------------TTTSCCGGGGGSSCCCCHHHHHHHHH
T ss_pred chhhHHHHHHH-HHHHHHHHHHHHhhhHHHH--Hhh------------------eeeccCchhhhcccccChHHHHHHHH
Confidence 23344444444 2455555555433222111 001 11222333456543 5666677777
Q ss_pred HHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004225 698 GLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIY 757 (767)
Q Consensus 698 aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 757 (767)
+-..+.+....... . .+-.-..++.+.+|.|+++-+.|..++.+|
T Consensus 572 VcDKILeHcP~~Ad-------------~--W~i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 572 VCDKILEHCPTRAD-------------I--WTIDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp HHHHHHHHCTTHHH-------------H--SCCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCcchhc-------------c--ceechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 76666664332111 0 111234456778999999999998888765
No 260
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.13 E-value=0.016 Score=60.14 Aligned_cols=190 Identities=19% Similarity=0.166 Sum_probs=118.1
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHh
Q 004225 494 KPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLL 573 (767)
Q Consensus 494 ~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL 573 (767)
-..||+.|+.+|+.+ ..-+.. ..++..++..+.....+++..++-.|.++.+.-.. + .++++.++..|
T Consensus 241 VAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~----L--d~Vv~aVL~GL 308 (800)
T 3oc3_A 241 VAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED----K--DGLCRKLVSLL 308 (800)
T ss_dssp BCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC----H--HHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH----H--HHHHHHHHhhc
Confidence 358999999999998 443333 35555566666788899999999999998322211 1 25788999999
Q ss_pred cCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCC--chhHHH
Q 004225 574 LHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAE--FFTKKE 651 (767)
Q Consensus 574 ~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~ 651 (767)
.+.|+ +|+..|+.+|.-++ .+ +.... ++..+-..|.+.+ ......
T Consensus 309 ~D~DD--DVRAVAAetLiPIA--~p------------------------~~l~~-----LL~iLWd~L~~LDDLSASTgS 355 (800)
T 3oc3_A 309 SSPDE--DIKLLSAELLCHFP--IT------------------------DSLDL-----VLEKCWKNIESEELISVSKTS 355 (800)
T ss_dssp TCSSH--HHHHHHHHHHTTSC--CS------------------------STHHH-----HHHHHHHHHHTCCSCCTTHHH
T ss_pred CCccc--HHHHHHHHHhhhhc--ch------------------------hhHHH-----HHHHHHHHhhhhcccchhhHH
Confidence 99998 66666666665555 11 11111 1222233333221 122222
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhch
Q 004225 652 AARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEG 731 (767)
Q Consensus 652 a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 731 (767)
....|+.++... .. .-.+...++.|.-.+.+.-+.||.+++.++..++. + . .-+.+
T Consensus 356 VMdLLAkL~s~p-~~---a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~-~-------------~-~LRLI----- 411 (800)
T 3oc3_A 356 NLSLLTKIYREN-PE---LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE-E-------------S-IDFLV----- 411 (800)
T ss_dssp HHHHHHHHHHHC-TT---CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC-H-------------H-HHHHH-----
T ss_pred HHHHHHHHHcCC-cc---cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh-h-------------h-HHHHH-----
Confidence 233333333221 00 00012578889999999999999999999988771 0 0 12222
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHH
Q 004225 732 FKKIEDLKRHDSNGICEKAVKILE 755 (767)
Q Consensus 732 ~~~l~~l~~~~~~~v~~~a~~~l~ 755 (767)
.++++-.+++++++.+.++.+
T Consensus 412 ---FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 412 ---AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ---HHHHHHCSCHHHHHHHHHHHH
T ss_pred ---HHHHHhCCcHHHHHHHHHHHH
Confidence 467788999999999998886
No 261
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.03 E-value=0.0028 Score=60.45 Aligned_cols=189 Identities=15% Similarity=0.132 Sum_probs=131.5
Q ss_pred HHHHhhh-cCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCCh
Q 004225 362 PGMLAGV-WSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAV 440 (767)
Q Consensus 362 ~~l~~~l-~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l 440 (767)
|.++..+ .++++.++..++..+ ....+..++++++ +.++..|+..|. .
T Consensus 52 p~l~~~ll~d~~~~VR~~AA~~l---------------~~~~l~~L~~D~~-~~VR~~aA~~L~---------------~ 100 (244)
T 1lrv_A 52 PHLAVQYLADPFWERRAIAVRYS---------------PVEALTPLIRDSD-EVVRRAVAYRLP---------------R 100 (244)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTS---------------CGGGGGGGTTCSS-HHHHHHHHTTSC---------------S
T ss_pred HHHHHHHhcCCCHHHHHHHHHhC---------------CHHHHHHHccCcC-HHHHHHHHHHCC---------------H
Confidence 6666554 788999999999853 1345777788888 999998886421 2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccch
Q 004225 441 PIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQV 520 (767)
Q Consensus 441 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 520 (767)
+.+..+++++++.||..++..+ . . +.+..++ ++++..++..++..+ .
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~---~------------~~L~~L~-~D~d~~VR~~aA~~l---~----------- 147 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P---L------------EQLEQMA-ADRDYLVRAYVVQRI---P----------- 147 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C---T------------GGGGGGT-TCSSHHHHHHHHHHS---C-----------
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C---H------------HHHHHHH-cCCCHHHHHHHHHhc---C-----------
Confidence 4677888999999999988843 1 1 1233445 889999999988732 1
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcc
Q 004225 521 RPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFL 600 (767)
Q Consensus 521 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~ 600 (767)
.+.+..+++++++.|+..++..+ ..+.+..+++++++
T Consensus 148 ---~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~d~---------------------- 184 (244)
T 1lrv_A 148 ---PGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDPEP---------------------- 184 (244)
T ss_dssp ---GGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCSSH----------------------
T ss_pred ---HHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCCCH----------------------
Confidence 12344667788999999887751 11334467788887
Q ss_pred eeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 004225 601 TQCTGIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPL 680 (767)
Q Consensus 601 ~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L 680 (767)
.|+..++..+ ..+.+..++.+.++.||..++..+. .+.|
T Consensus 185 ----~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L 223 (244)
T 1lrv_A 185 ----EVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEAL 223 (244)
T ss_dssp ----HHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHH
T ss_pred ----HHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHH
Confidence 6666666542 1356777788889999998887743 2345
Q ss_pred HhhhcCCCHHHHHHHHHHH
Q 004225 681 CDLLLYADPEIVTICLKGL 699 (767)
Q Consensus 681 ~~ll~~~~~~v~~~al~aL 699 (767)
..+ +++++.|+..+...|
T Consensus 224 ~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 224 REL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHC-CCCCHHHHHHHHCCC
T ss_pred HHc-cCCCHHHHHHHHHHh
Confidence 556 888999998887654
No 262
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.84 E-value=1.4 Score=45.26 Aligned_cols=304 Identities=15% Similarity=0.099 Sum_probs=174.4
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhc-C-CChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCC
Q 004225 362 PGMLAGVWSDDSGLQLEATTWFRKLL-L-PPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGG 438 (767)
Q Consensus 362 ~~l~~~l~s~~~~~~~~a~~~L~~l~-~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~ 438 (767)
..++... ++++..+.-|++.+.++. . +.. ....+..++.++.+++ ..+|.+|.+.|-.++. ++...+
T Consensus 32 ~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~~~i~ki---- 101 (507)
T 3u0r_A 32 QVILDGV-KGGTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLCEDED-VSIRRQAIKELPQFATGENLPRV---- 101 (507)
T ss_dssp HHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHHTCSS-HHHHHHHHHHGGGGCCTTCHHHH----
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhccc-HHHHHHHHHhhHHHhhhhhhhhH----
Confidence 3344444 446899999999999988 2 222 2234788999999999 9999999999999988 554443
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC--CCCC
Q 004225 439 AVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK--PEPP 516 (767)
Q Consensus 439 ~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--~~~~ 516 (767)
...|+++|..+++.-...+-.+|..+..-++. +.+..+...+ ..+++.+|+.++..|..-...- ....
T Consensus 102 -aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i-~~~~e~~Rer~lkFi~~kl~~l~~~~l~ 171 (507)
T 3u0r_A 102 -ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQI-LQGEDIVRERAIKFLSTKLKTLPDEVLT 171 (507)
T ss_dssp -HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHH-HHSCHHHHHHHHHHHHHHGGGSCTTTSC
T ss_pred -HHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHH-cccchHHHHHHHHHHHHHHhhcchhhcc
Confidence 56899999998888778788888877755443 2345566666 3467899999998886543332 2223
Q ss_pred ccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChh-HHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhc
Q 004225 517 FDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTND-KIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVK 595 (767)
Q Consensus 517 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~ 595 (767)
.....-++..+...+++-+.+--...+.+|..+-..... ..+. +++.+.....-..+...
T Consensus 172 ~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~-------------- 232 (507)
T 3u0r_A 172 KEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNP-------------- 232 (507)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCS--------------
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCC--------------
Confidence 333445666666777666665556666777666544332 1222 23333333221111000
Q ss_pred cCCcceeehhhhHHHHHHHhhhcc--CCHHHHHHHHHcCCHHHHHHHHhcC-CchhHHHHHHHHHHhhcCCC-HHHHHHH
Q 004225 596 GDGFLTQCTGIAKEACRTISNITA--GNREQIQVVIDAGVIGPLVDLLQNA-EFFTKKEAARAISNAISGGT-HEQIKYL 671 (767)
Q Consensus 596 ~~~~~~~~l~v~~~a~~~l~nl~~--~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~-~~~~~~l 671 (767)
.+.+..+ .+...+-.++--.+. .+.....++.+. ++|.+-.+-... ..+.|.....+++.++.... .+.....
T Consensus 233 sD~e~vd--RlI~C~~~ALP~FS~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~ 309 (507)
T 3u0r_A 233 SDPDCVD--RLLQCTRQAVPLFSKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETN 309 (507)
T ss_dssp SCHHHHH--HHHHHHHHHGGGCBTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHH
T ss_pred cCHHHHH--HHHHHHHHHHHHhccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHH
Confidence 0000000 111111222222222 345555555554 777544333322 23478888889999887654 3433333
Q ss_pred HHcCChHHHHhhhcCCC-----------------HHHHHHHHHHHHHHHHhhhh
Q 004225 672 VRKGCIKPLCDLLLYAD-----------------PEIVTICLKGLENILKVGEA 708 (767)
Q Consensus 672 ~~~~~i~~L~~ll~~~~-----------------~~v~~~al~aL~~l~~~~~~ 708 (767)
+.. ++..|...+.... -.-++..+.++..+......
T Consensus 310 l~~-iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~ 362 (507)
T 3u0r_A 310 LRK-LFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPD 362 (507)
T ss_dssp HHH-HHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTH
T ss_pred HHH-HHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChh
Confidence 322 4455555543211 13346677788888775443
No 263
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.76 E-value=1 Score=44.07 Aligned_cols=228 Identities=9% Similarity=0.062 Sum_probs=148.2
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccc------hhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 004225 475 LVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQ------VRPALPALAQLVHSNDNDVLRYACEALSC 548 (767)
Q Consensus 475 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 548 (767)
.+...+.+..++..+ ..-+.+.++.+..++.++.+.....+... ...++..|+....+++ +...+-..|..
T Consensus 73 ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d--iAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE--IALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT--THHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch--hHhHHHHHHHH
Confidence 345667888888888 78889999999999999988763322221 1344555555444443 43344444444
Q ss_pred hccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHH
Q 004225 549 LSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVV 628 (767)
Q Consensus 549 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~ 628 (767)
...+ +.....+...+.+..+.+.++.++- ++...|..++.-+.. .........
T Consensus 150 cir~-e~la~~iL~~~~f~~fF~yv~~~~F--diasDAf~TfkelLt------------------------~Hk~lvaef 202 (341)
T 1upk_A 150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTF--DIASDAFATFKDLLT------------------------RHKLLSAEF 202 (341)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHTTCSSH--HHHHHHHHHHHHHHH------------------------SSHHHHHHH
T ss_pred HHHh-HHHHHHHhccHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHh------------------------ccHHHHHHH
Confidence 4444 3445556677778888899999888 666666666555532 222222233
Q ss_pred HHc---CCHHHHHHHHhcCCchhHHHHHHHHHHhhcCC-CHHHH-HHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 004225 629 IDA---GVIGPLVDLLQNAEFFTKKEAARAISNAISGG-THEQI-KYLVRKGCIKPLCDLLLYADPEIVTICLKGLENIL 703 (767)
Q Consensus 629 ~~~---~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~-~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~ 703 (767)
+.. .++...-.++.+++.-.|+.+...|+.+.... +...+ +++-+..-+..++.+|++....++-.|-.+..-++
T Consensus 203 L~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 203 LEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp HHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 322 24667778999999999999999999998742 12222 23333466888999999999999999999888776
Q ss_pred HhhhhhhccCCccccccHHHHHHHh--hchHHHHHHHhcCC
Q 004225 704 KVGEAEMNTGTANRYFNHYARLVEA--AEGFKKIEDLKRHD 742 (767)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~l~~l~~~~ 742 (767)
.... .+.++..++.. ...++-+..+..+.
T Consensus 283 ANP~----------K~~~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 283 ANPN----------KTQPILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HCSS----------CCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred eCCC----------CChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5321 45566777653 34455555555554
No 264
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.64 E-value=0.18 Score=46.62 Aligned_cols=144 Identities=17% Similarity=0.092 Sum_probs=106.2
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHHhc-CCchhHHHHH
Q 004225 400 VARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVK-LLSSPSDDVREKAVWALGNIAR-SSPRDRDLVL 477 (767)
Q Consensus 400 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~ 477 (767)
++....+.+++. ..+|..|+..|+.. .. ....++.+.. +-.+++-.|++.++.+++.++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SK------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TT------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cC------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----
Confidence 445555666777 79999999987766 31 1124566666 5566889999999999999984 33431
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHH
Q 004225 478 SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKI 557 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 557 (767)
.++.+.... .+++..+|+.|+....-.+.. + ........++|.+..+..+++.-|++...|.|..++..+++-.
T Consensus 140 ---~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 140 ---ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp ---THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 456677777 899999999999988654433 1 1233345678888888889999999999999999999988776
Q ss_pred HHHHh
Q 004225 558 QAVIE 562 (767)
Q Consensus 558 ~~~~~ 562 (767)
..+++
T Consensus 214 ~~~~~ 218 (240)
T 3l9t_A 214 KIELK 218 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 265
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.52 E-value=0.26 Score=47.14 Aligned_cols=101 Identities=11% Similarity=0.057 Sum_probs=74.5
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNT 712 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~ 712 (767)
++|.|++-+-+....+|..+-.++..+.....+. .+++.+.+-+++.|..++..++..+..++...+.
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~---- 200 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGI---- 200 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS----
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC----
Confidence 5677877776777778888777776655422222 2466677778899999999999999999874321
Q ss_pred CCccccccHHHHHHHhhchH---HHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 713 GTANRYFNHYARLVEAAEGF---KKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 713 ~~~~~~~~~~~~~l~~~g~~---~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
. ...++ +.+-.++.+.|.+||+.|..++..+|.
T Consensus 201 -------~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 201 -------S-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp -------G-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred -------C-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1 23356 888889999999999999999988775
No 266
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.51 E-value=0.76 Score=53.82 Aligned_cols=321 Identities=14% Similarity=0.137 Sum_probs=162.7
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHh-hhhHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHHhcCC-chhHHHHH
Q 004225 401 ARFVEFLTREDNPQLQLEAARALTNIAS-ENTNVVIDGGAVPIF-VKLLSSPSDDVREKAVWALGNIARSS-PRDRDLVL 477 (767)
Q Consensus 401 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~l~~L-~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~ 477 (767)
+.+...+....++.+...+..++..+.+ -....+++.+.++.+ ..+| .+++++..|+.+|..+.... +++.+.+.
T Consensus 209 ~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~ 286 (1073)
T 3gjx_A 209 QLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFE 286 (1073)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHH
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHH
Confidence 3344445444447888888899999988 455677788888887 4666 57789999999999988643 22222221
Q ss_pred h--cCCHHHHHHHHc------------cCCChHHHHHHHHHHHhhcCCCC-----CCC-ccchhchHHHHHHHhcCCCHH
Q 004225 478 S--EKALIPLLAQLN------------KHAKPSMLRNATKTLSRFCQGKP-----EPP-FDQVRPALPALAQLVHSNDND 537 (767)
Q Consensus 478 ~--~g~i~~L~~ll~------------~~~~~~~~~~~~~~L~~l~~~~~-----~~~-~~~~~~~i~~L~~ll~~~~~~ 537 (767)
. .+++..+-.++. ...+++.....+..+..+....- ... ......++..++.+...+|.+
T Consensus 287 ~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~e 366 (1073)
T 3gjx_A 287 TLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETE 366 (1073)
T ss_dssp HHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHH
Confidence 1 011111112220 12234555555555554433210 000 111222344455555567777
Q ss_pred HHHHHHHHHHhhccC----C------------------hhHHHHHHh--cCcHHHHHHHhcCCCCCCcccchHHHHHhhh
Q 004225 538 VLRYACEALSCLSDG----T------------------NDKIQAVIE--ADVCPRLVKLLLHPLPFPFGLTPPLWTVRYI 593 (767)
Q Consensus 538 v~~~a~~~L~~l~~~----~------------------~~~~~~~~~--~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l 593 (767)
+.+.++..-..+... . +.....+.. ..+...++.-+..+++ +. +
T Consensus 367 i~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~e---v~---------i 434 (1073)
T 3gjx_A 367 IFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEE---VL---------V 434 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCC---EE---------E
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCcc---cc---------c
Confidence 776666554444321 0 001000000 0122233333333322 00 0
Q ss_pred hcc-CCcce-eeh---------hhhHHHHHHHhhhccCCHHHHHHHHHcCCHHHHHHHHhc--CCchhHHHHHHHHHHhh
Q 004225 594 VKG-DGFLT-QCT---------GIAKEACRTISNITAGNREQIQVVIDAGVIGPLVDLLQN--AEFFTKKEAARAISNAI 660 (767)
Q Consensus 594 ~~~-~~~~~-~~l---------~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~nl~ 660 (767)
..+ ..+.. ... +..++++..+.++.. .+.... +.+.+-+.+.. .++.....++|+++.++
T Consensus 435 ~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~--~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIa 507 (1073)
T 3gjx_A 435 VENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDY--VDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSIS 507 (1073)
T ss_dssp EECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCH--HHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTT
T ss_pred cCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCH--HHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHH
Confidence 000 00011 100 233344433333322 122111 23334444443 35788999999999998
Q ss_pred cCCCHHHH-HHHHHcCChHHHHhhhcCC---C--HHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHH
Q 004225 661 SGGTHEQI-KYLVRKGCIKPLCDLLLYA---D--PEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKK 734 (767)
Q Consensus 661 ~~~~~~~~-~~l~~~~~i~~L~~ll~~~---~--~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 734 (767)
..-.++.- ..+. .+++.|+.+.+.+ + +.++..++|+++++.+.-.. ..+.| ...+..
T Consensus 508 g~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~-------------h~~~L--~~vl~~ 570 (1073)
T 3gjx_A 508 GAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA-------------HWKFL--KTVVNK 570 (1073)
T ss_dssp TSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH-------------CHHHH--HHHHHH
T ss_pred CcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh-------------CHHHH--HHHHHH
Confidence 55444322 2222 2677777777643 2 23444466888777664321 12222 223677
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 735 IEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 735 l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
|.+.+++.++.|++.|..++.++-.
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 7788899999999999999887644
No 267
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.10 E-value=1.7 Score=44.60 Aligned_cols=33 Identities=3% Similarity=0.274 Sum_probs=18.6
Q ss_pred CCccEEeeecCCCccccccCccccCcCCCceeeeec
Q 004225 6 QNLTRLTLSCCMNLRCLFSSSTVSSFVQLQCIEIVG 41 (767)
Q Consensus 6 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 41 (767)
.+|+.+.+.. .++.+ +...+.++.+|+.+++.+
T Consensus 46 ~~i~~v~ip~--~vt~I-g~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 46 DRISEVRVNS--GITSI-GEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGCSEEEECT--TEEEE-CTTTTTTCTTCCEEEECT
T ss_pred cCCEEEEeCC--CccCh-HHHHhhCCCCCCEEEeCC
Confidence 3456666543 34555 233456677777777743
No 268
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.90 E-value=0.39 Score=46.54 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=94.3
Q ss_pred HHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhc-CCCHHHHH
Q 004225 462 LGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVH-SNDNDVLR 540 (767)
Q Consensus 462 L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~ 540 (767)
|-|+..++.+..+-+++.+++..+...+ ..++.++.+++...+.+.+... ..........+|.+++.+. +++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 3455567777888899999999999999 8999999999999999998664 2233344678899998887 78899999
Q ss_pred HHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 541 YACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 541 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
.....++|+..+.....+..+..++++.+-..+....+
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~ 381 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPR 381 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCC
Confidence 99999999999998888877888999998888765443
No 269
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.48 E-value=0.44 Score=44.46 Aligned_cols=99 Identities=8% Similarity=0.154 Sum_probs=77.6
Q ss_pred hhhHHHHHHHhhhcc-CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHc--------C
Q 004225 605 GIAKEACRTISNITA-GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRK--------G 675 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~--------~ 675 (767)
.+|..++++++.+++ ++++.+..+++.+++|...+.++.++.-.|..|.+.+..+..+ ..+..++.+. .
T Consensus 117 ~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~d--d~GL~YiC~t~eRF~av~~ 194 (268)
T 2fv2_A 117 YLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD--DTGLAYICQTYERFSHVAM 194 (268)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS--HHHHHHHTSSHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhcc--chhHHHHHccHHHHHHHHH
Confidence 678888999999988 7889999999999999999999999999999999999999874 5555554431 1
Q ss_pred ChHHHH-hhhcCCCHHHHHHHHHHHHHHHHh
Q 004225 676 CIKPLC-DLLLYADPEIVTICLKGLENILKV 705 (767)
Q Consensus 676 ~i~~L~-~ll~~~~~~v~~~al~aL~~l~~~ 705 (767)
++..++ .+.+++++.+.+.++.+-.+++.+
T Consensus 195 vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 195 ILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 222222 234567888888888888888754
No 270
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.44 E-value=0.016 Score=52.98 Aligned_cols=123 Identities=7% Similarity=0.007 Sum_probs=61.1
Q ss_pred cCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccCCCC--cccCCCCccEEEeccCCccc
Q 004225 29 SSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCTGDL--DILEFPSLKELRISKCPEFM 106 (767)
Q Consensus 29 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~ 106 (767)
...++|++|++++|..+..- +...+...+...++|++|+++++. +.+-....+ .....++|++|++++|..-.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~----g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVP----TLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHH----HHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred hcCCCCCEEEecCCCCCCHH----HHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 45667777777776334321 112233444455677777777764 322110000 01234677777777765322
Q ss_pred ccc---cccccccccCCCceeee--CCcccccccccCCCcchhcchhhHhhhccccceeeecCCC
Q 004225 107 VRT---TSIFTERVFPNLEKLKV--DAKHVVTNKYHLGDERTILSLGDFLQRLHTMKVLQIGGYS 166 (767)
Q Consensus 107 ~~~---~~~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (767)
... ...+ ...++|++|++ .+|.. + ......+...+...++|+.|.++++.
T Consensus 108 ~g~~~l~~~L--~~n~~L~~L~L~~~~N~i-~-------~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEAL--QSNTSLIELRIDNQSQPL-G-------NNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGG--GGCSSCCEEECCCCSSCC-C-------HHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHH--HhCCCceEEEecCCCCCC-C-------HHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 110 0111 24567888887 55542 1 11222344455556677777776654
No 271
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.15 E-value=0.017 Score=54.94 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=45.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhcCCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCCh
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLLLPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAV 440 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l 440 (767)
...+..++.++++.++..++..|. .+.|..++++++ +.++..++..+ . .
T Consensus 76 ~~~l~~L~~D~~~~VR~~aA~~L~---------------~~~L~~ll~D~d-~~VR~~aA~~l---~------------~ 124 (244)
T 1lrv_A 76 VEALTPLIRDSDEVVRRAVAYRLP---------------REQLSALMFDED-REVRITVADRL---P------------L 124 (244)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTSC---------------SGGGGGTTTCSC-HHHHHHHHHHS---C------------T
T ss_pred HHHHHHHccCcCHHHHHHHHHHCC---------------HHHHHHHHcCCC-HHHHHHHHHhC---C------------H
Confidence 344566668899999999986531 145677777777 88888777632 1 1
Q ss_pred HHHHHhhCCCCHHHHHHHHH
Q 004225 441 PIFVKLLSSPSDDVREKAVW 460 (767)
Q Consensus 441 ~~L~~lL~~~~~~v~~~a~~ 460 (767)
+.+..+++++++.||..++.
T Consensus 125 ~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 125 EQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 23455566677777777665
No 272
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.00 E-value=0.037 Score=50.50 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=22.1
Q ss_pred CCCCccEEEeccCCccccccccccc--ccccCCCceeeeCCcc
Q 004225 90 EFPSLKELRISKCPEFMVRTTSIFT--ERVFPNLEKLKVDAKH 130 (767)
Q Consensus 90 ~~~~L~~L~l~~c~~l~~~~~~~~~--~~~l~~L~~L~l~~~~ 130 (767)
..++|++|++++|..+.......+. ....++|++|++++|.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 4567777777777444432211111 1234667777777665
No 273
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.00 E-value=1.4 Score=45.26 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHH
Q 004225 450 PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQ 529 (767)
Q Consensus 450 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ 529 (767)
+++..+.-|+..+.....+.|+..+. ++..++.+. ++++..+|..|+..|..+|.+ ....++...|.+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 67899999999999999999987654 678899999 999999999999999999977 347889999999
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCCh
Q 004225 530 LVHSNDNDVLRYACEALSCLSDGTN 554 (767)
Q Consensus 530 ll~~~~~~v~~~a~~~L~~l~~~~~ 554 (767)
+++.+++.....+=++|..+...++
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dp 132 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDA 132 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHhccchHHHHHHHHHHHHHHhcCh
Confidence 9998887777777777776665543
No 274
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.73 E-value=0.71 Score=42.75 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=99.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcC-CCCCCCcc
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQ-GKPEPPFD 518 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~-~~~~~~~~ 518 (767)
++....+.+++..++|..|+..|+.. ... .+ +++.+...+..+++-.|++.++.++..++. ..+.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---~~------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---KE------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---HH------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---HH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 44555666778889999999999887 311 11 344444534478899999999999999985 3333
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh--hHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhcc
Q 004225 519 QVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTN--DKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKG 596 (767)
Q Consensus 519 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~ 596 (767)
..++.+.....+++..+|+.|...+.-.+.... .... .+++.+-.+..+++.
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~s~------------------ 192 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDVSE------------------ 192 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCSCH------------------
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCChHH------------------
Confidence 267788888999999999999988765443211 1111 145556666666665
Q ss_pred CCcceeehhhhHHHHHHHhhhccCCHHHHHHHHH
Q 004225 597 DGFLTQCTGIAKEACRTISNITAGNREQIQVVID 630 (767)
Q Consensus 597 ~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~ 630 (767)
-|++...+.|..+++..|+....+++
T Consensus 193 --------yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 193 --------YVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp --------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 77888888888888888877766554
No 275
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.29 E-value=2.1 Score=44.22 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=53.0
Q ss_pred cccccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhccccccccc
Q 004225 197 SVTNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAK 275 (767)
Q Consensus 197 ~~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 275 (767)
..+++|+.+.+.+ .+..+... ...+.+|+++.|.+ .++.+.. ..+.++.+|+++.|.. .++.+.......
T Consensus 285 ~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~~C~~L~~i~ip~--sv~~I~~~aF~~-- 355 (394)
T 4gt6_A 285 MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD-DAFAGCEQLERIAIPS--SVTKIPESAFSN-- 355 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEEECT--TCCBCCGGGGTT--
T ss_pred ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH-hHhhCCCCCCEEEECc--ccCEEhHhHhhC--
Confidence 3456777777743 23333322 33467888888854 3555533 3356788888888853 244444332211
Q ss_pred cccccccccceEeecCCCCcccccCCCccccCCccceEee
Q 004225 276 DEVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVV 315 (767)
Q Consensus 276 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i 315 (767)
+++|+.+.+.+-. ..+. ....+.+|+.+.+
T Consensus 356 -----C~~L~~i~~~~~~--~~~~---~~~~~~~L~~i~i 385 (394)
T 4gt6_A 356 -----CTALNNIEYSGSR--SQWN---AISTDSGLQNLPV 385 (394)
T ss_dssp -----CTTCCEEEESSCH--HHHH---TCBCCCCC-----
T ss_pred -----CCCCCEEEECCce--eehh---hhhccCCCCEEEe
Confidence 6788888887632 2221 2244566776654
No 276
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.82 E-value=5.1 Score=48.10 Aligned_cols=311 Identities=11% Similarity=0.034 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHHhcC-----CchhHHHHHhcCCHHHH
Q 004225 413 PQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLS--SPSDDVREKAVWALGNIARS-----SPRDRDLVLSEKALIPL 485 (767)
Q Consensus 413 ~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~g~i~~L 485 (767)
++.|.+|-..|..+.. ...+...+...|. +.+..+|..|+.+|.+.... +++.+..+ + ..+
T Consensus 27 ~~~r~~Ae~~L~~~~~-------~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r----~~l 94 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-------KCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-K----NSV 94 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-------HCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-H----HHH
T ss_pred hHHHHHHHHHHHHHHh-------CchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-H----HHH
Confidence 6788888888777643 1124455555443 46789999999999988732 23333332 3 334
Q ss_pred HHHHccC------CChHHHHHHHHHHHhhcCCC-CCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccC------
Q 004225 486 LAQLNKH------AKPSMLRNATKTLSRFCQGK-PEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDG------ 552 (767)
Q Consensus 486 ~~ll~~~------~~~~~~~~~~~~L~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~------ 552 (767)
++.+... .+..++...+.++..++..+ |. .-..+++.++++++. +...+..++.+|..+++.
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~ 169 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT 169 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence 4444222 45788888999999988765 32 124678888888866 455677788888887642
Q ss_pred -ChhHHHH---HHhc---CcHHHHHHHhcCCCCCCcccchHHHH----HhhhhccCCcceeehhhhHHHHHHHhhhccCC
Q 004225 553 -TNDKIQA---VIEA---DVCPRLVKLLLHPLPFPFGLTPPLWT----VRYIVKGDGFLTQCTGIAKEACRTISNITAGN 621 (767)
Q Consensus 553 -~~~~~~~---~~~~---~~~~~L~~lL~~~~~~~~v~~~a~~~----L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~ 621 (767)
....... .+.. .+++.+..++..... ..+. ++++... .....+...++.++.+...--
T Consensus 170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~-------~~~~~~~~~~~~~~~----~~~~~l~~~aL~~l~~~l~Wi 238 (1204)
T 3a6p_A 170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVN-------KYQQVKTDTSQESKA----QANCRVGVAALNTLAGYIDWV 238 (1204)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-------HHHHHTTCSTTHHHH----HHHHHHHHHHHHHHHTTTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcccccccchhhh----hhhHHHHHHHHHHHHHHHhcc
Confidence 1111111 1111 122222222211000 0000 0000000 000045566677776665521
Q ss_pred HHHHHHHHHcC--CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCC-HHHHHHHHHc---CChHHHHhhhc--------CC
Q 004225 622 REQIQVVIDAG--VIGPLVDLLQNAEFFTKKEAARAISNAISGGT-HEQIKYLVRK---GCIKPLCDLLL--------YA 687 (767)
Q Consensus 622 ~~~~~~~~~~~--~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~l~~~---~~i~~L~~ll~--------~~ 687 (767)
+. ..+++.. +++.++.++. +++++..|+.+|..++.... ++....++.. ..+..++.... +.
T Consensus 239 ~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~ 314 (1204)
T 3a6p_A 239 SM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEK 314 (1204)
T ss_dssp CH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHH
T ss_pred CH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccH
Confidence 11 1233332 5666665554 57899999999999997532 3332222221 01223333321 12
Q ss_pred CHHHHHHHHHHHHHHHHhhhhh-hccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Q 004225 688 DPEIVTICLKGLENILKVGEAE-MNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILEIYWSCGV 762 (767)
Q Consensus 688 ~~~v~~~al~aL~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 762 (767)
+.++.+..+..+..+....... .+..... ....+ .+.++.+..+..+++.++...+..+...++..+.
T Consensus 315 d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~-~~~~l------~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~ 383 (1204)
T 3a6p_A 315 HYVFLKRLCQVLCALGNQLCALLGADSDVE-TPSNF------GKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEI 383 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCC-CCTTH------HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc-ChhHH------HHHHHHHHHHHhCccHHhHHHHHHHHHHHHhccc
Confidence 3455555555555554321100 0000000 01111 2446778888888998898888888887776653
No 277
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=91.96 E-value=0.08 Score=51.15 Aligned_cols=85 Identities=20% Similarity=0.236 Sum_probs=47.6
Q ss_pred cCcCCCceeeeeccCCcceEEeccchhhcccccCCCCccceeecccccccccccC-CCCcccCCCCccEEEeccCCcccc
Q 004225 29 SSFVQLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLEKFTSFCT-GDLDILEFPSLKELRISKCPEFMV 107 (767)
Q Consensus 29 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~ 107 (767)
..+++|++|+++++. +..+ ..++..+..+++|+.|+|++. ++.++.. .. ...+ +|++|.+.+++....
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l------~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~--l~~l-~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRL------DDMSSIVQKAPNLKILNLSGN-ELKSERELDK--IKGL-KLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCC------GGGTTHHHHSTTCCEEECTTS-CCCSGGGGGG--GTTS-CCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCC-CCCC------ccchhHHhhCCCCCEEECCCC-ccCCchhhhh--cccC-CcceEEccCCcCccc
Confidence 357788888888774 5443 112223345788888888763 3443321 11 1123 888888888774431
Q ss_pred cc------cccccccccCCCceeee
Q 004225 108 RT------TSIFTERVFPNLEKLKV 126 (767)
Q Consensus 108 ~~------~~~~~~~~l~~L~~L~l 126 (767)
.. ...+ ..+|+|+.|+-
T Consensus 236 ~~~~~~y~~~il--~~~P~L~~LDg 258 (267)
T 3rw6_A 236 FRDQSTYISAIR--ERFPKLLRLDG 258 (267)
T ss_dssp CSSHHHHHHHHH--HHCTTCCEESS
T ss_pred cCcchhHHHHHH--HHCcccCeECC
Confidence 10 0011 36788888853
No 278
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.54 E-value=0.98 Score=44.34 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=72.1
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHh--hhhHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 004225 402 RFVEFLTREDNPQLQLEAARALTNIAS--ENTNVVIDG--GAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVL 477 (767)
Q Consensus 402 ~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 477 (767)
.+...+.++..+..+..+++++.|+.. ..+..+... .+++.+...+.+++..++..++..+.|++...-..+..-.
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 344555544447789999999999998 445554432 2445555566667899999999999999942110000000
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 478 SEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 478 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
...+...+.+++....+.+...-++.+++++...+
T Consensus 231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCC
Confidence 11144555566655678899999999999998653
No 279
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.93 E-value=1.4 Score=41.55 Aligned_cols=139 Identities=15% Similarity=0.119 Sum_probs=92.0
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHH-cCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHH-HHHHH----------
Q 004225 605 GIAKEACRTISNITAGNREQIQVVID-AGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ-IKYLV---------- 672 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~l~---------- 672 (767)
....+++.++..+.. +....+.+++ .+.+..+...+.++++.++..|...|+.++....++. ...++
T Consensus 69 ~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 69 RNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 445556666665544 3455555654 4568888888888899999999988887776432111 11111
Q ss_pred HcCChHHHHhhhcC-CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHH
Q 004225 673 RKGCIKPLCDLLLY-ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAV 751 (767)
Q Consensus 673 ~~~~i~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~ 751 (767)
+..-+..+++.++. .+.+.+..++..+-.++...++.. .--..+..+...|..+.+..+...+++++..+..
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~-------~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 23467778888874 566777777777766666543322 2345777888999999999999888888765443
No 280
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=90.86 E-value=1.5 Score=43.14 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCh-HHHHh--cCchHHHHhhccCCCCHHHHHHHHHHHHHHHh-hh--hHHHHhCCChHH
Q 004225 370 SDDSGLQLEATTWFRKLL-LPPS-EKVIQ--SGVVARFVEFLTREDNPQLQLEAARALTNIAS-EN--TNVVIDGGAVPI 442 (767)
Q Consensus 370 s~~~~~~~~a~~~L~~l~-~~~~-~~i~~--~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~--~~~~~~~~~l~~ 442 (767)
+..+..+.-+++.+.++. ++.. ..+.. ..+++.+...+.+++ ..++..++..+.|++. .. +..-....++..
T Consensus 159 ~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~n-knl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~ 237 (304)
T 3ebb_A 159 KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSN-KNIHIALATLALNYSVCFHKDHNIEGKAQCLSL 237 (304)
T ss_dssp TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCC-HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Confidence 345777899999999998 4433 23332 235556666665666 8999999999999998 11 110001113444
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHH
Q 004225 443 FVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNA 501 (767)
Q Consensus 443 L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~ 501 (767)
+..+++. .|.+..+.++.+||++...+++.++..-..|+-..+-+....+....+.+.|
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~ 297 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECC 297 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHH
Confidence 4555544 7899999999999999987666555443344433333333222344444443
No 281
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=90.55 E-value=14 Score=44.44 Aligned_cols=215 Identities=11% Similarity=0.052 Sum_probs=121.9
Q ss_pred HHHHHhhhcCC--CHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhcc-CCCCHHHHHHHHHHHHHHHh-------h
Q 004225 361 LPGMLAGVWSD--DSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLT-REDNPQLQLEAARALTNIAS-------E 429 (767)
Q Consensus 361 i~~l~~~l~s~--~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~-------~ 429 (767)
+..+++.+.++ +.+.+.+|-..|..+- ++. ....+...+. .+.++.+|..|+.+|.+... +
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~--------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP--------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT--------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 44555555554 6778888988888865 221 2233333222 33348999999999999876 1
Q ss_pred hhHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHHhcCC-chhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHH
Q 004225 430 NTNVVIDGGAVPIFVKLLSS---PSDDVREKAVWALGNIARSS-PRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTL 505 (767)
Q Consensus 430 ~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L 505 (767)
..+..++..+++.+...-.. ..+.++.+.+.++..++... +... .+.++.+++++ .. ++..++.++.+|
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~-~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLS-KQ-GETQTELVMFIL 157 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHH-HT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHh-cC-CHHHHHHHHHHH
Confidence 22223333344444443211 45889999999999988532 1111 24667888888 33 556678888888
Q ss_pred HhhcCCC-CCCC--ccc-----------hhchHHHHHHHhcC-------------------CCHHHHHHHHHHHHhhccC
Q 004225 506 SRFCQGK-PEPP--FDQ-----------VRPALPALAQLVHS-------------------NDNDVLRYACEALSCLSDG 552 (767)
Q Consensus 506 ~~l~~~~-~~~~--~~~-----------~~~~i~~L~~ll~~-------------------~~~~v~~~a~~~L~~l~~~ 552 (767)
..++.+. .... ... ...+++.+..++++ .+..++..++.++.+....
T Consensus 158 ~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W 237 (1204)
T 3a6p_A 158 LRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW 237 (1204)
T ss_dssp HHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 8886542 1111 000 11333444444432 1245666777777766554
Q ss_pred ChhHHHHHHhcC--cHHHHHHHhcCCCCCCcccchHHHHHhhhhcc
Q 004225 553 TNDKIQAVIEAD--VCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKG 596 (767)
Q Consensus 553 ~~~~~~~~~~~~--~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~ 596 (767)
-+. ..+.+.. .++.+..++. ++ +++..|+.+|..+...
T Consensus 238 i~~--~~i~~~~~~ll~~l~~~l~--~~--~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 238 VSM--SHITAENCKLLEILCLLLN--EQ--ELQLGAAECLLIAVSR 277 (1204)
T ss_dssp SCH--HHHHTTTSHHHHHHHHGGG--CT--TTHHHHHHHHHHHHTC
T ss_pred cCH--HHHHhccchHHHHHHHHcC--CH--HHHHHHHHHHHHHHhC
Confidence 321 2233322 5666666655 34 6777777777777643
No 282
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=90.37 E-value=0.12 Score=50.02 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=55.7
Q ss_pred CCCccceeecccccccccccCCCCcccCCCCccEEEeccCCcccccccccccccccC--CCceeeeCCcccccccccCCC
Q 004225 63 MFPQLQYLKMSDLEKFTSFCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTERVFP--NLEKLKVDAKHVVTNKYHLGD 140 (767)
Q Consensus 63 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~ 140 (767)
.+|+|++|+|++. ++..+.........+++|+.|+++++. +.+.. . + ..+. +|++|.+.+|+.....+ +
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~-l--~~l~~l~L~~L~L~~Npl~~~~~---~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-E-L--DKIKGLKLEELWLDGNSLCDTFR---D 238 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-G-G--GGGTTSCCSEEECTTSTTGGGCS---S
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCch-h-h--hhcccCCcceEEccCCcCccccC---c
Confidence 4899999999985 354443211002469999999998765 33221 1 1 1233 99999999988644311 1
Q ss_pred cchhcchhhHhhhccccceeeecC
Q 004225 141 ERTILSLGDFLQRLHTMKVLQIGG 164 (767)
Q Consensus 141 ~~~~~~~~~~~~~l~~L~~L~l~~ 164 (767)
. .......+..+++|+.|+-..
T Consensus 239 ~--~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 239 Q--STYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp H--HHHHHHHHHHCTTCCEESSCB
T ss_pred c--hhHHHHHHHHCcccCeECCcC
Confidence 1 112234577888888886543
No 283
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.24 E-value=2.4 Score=43.22 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=90.7
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHH-cCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHH-HHHHH----------
Q 004225 605 GIAKEACRTISNITAGNREQIQVVID-AGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ-IKYLV---------- 672 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~l~---------- 672 (767)
.....++.++..+... ......+++ ...+..+...+.+..+.++..|...|+.++....++. ...++
T Consensus 135 ~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~ 213 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 213 (383)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhC
Confidence 3444555555555433 455555664 4568888889989999999999999988886532111 22222
Q ss_pred HcCChHHHHhhhcC-CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHH
Q 004225 673 RKGCIKPLCDLLLY-ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICE 748 (767)
Q Consensus 673 ~~~~i~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~ 748 (767)
+..-+..+++.++. .+.+.+..++..|-.++...++.. .-...+..+...|..+.+..+-..+++++..
T Consensus 214 e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~-------~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 214 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred CCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 23567888888886 577777777777777766543322 3345677788999999999987777776653
No 284
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.86 E-value=11 Score=44.24 Aligned_cols=175 Identities=11% Similarity=0.113 Sum_probs=103.7
Q ss_pred HHHHHHHHcc---CCChHHHHHHHHHHHhhc----CCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh
Q 004225 482 LIPLLAQLNK---HAKPSMLRNATKTLSRFC----QGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTN 554 (767)
Q Consensus 482 i~~L~~ll~~---~~~~~~~~~~~~~L~~l~----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 554 (767)
+..+..++.. ..++.+++.++.+++.+. ...+.+.......+...+...+...+.+-+..++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 4555566621 245677777777776664 3334444444566677777777788888889999999998652
Q ss_pred hHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHHHHHHHcCCH
Q 004225 555 DKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQIQVVIDAGVI 634 (767)
Q Consensus 555 ~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i 634 (767)
..++.+.+++..... . .... ...++..|++++.+++...+...+
T Consensus 471 ---------~~l~~l~~~l~~~~~--~---------------~~~~--~~rvr~aAi~ALr~~~~~~p~~v~-------- 514 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGK--S---------------LDEY--STRVQAEAIMALRNIAKRDPRKVQ-------- 514 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSS--C---------------CCCS--CHHHHHHHHHTTTTGGGTCHHHHH--------
T ss_pred ---------hHHHHHHHhhcCccc--c---------------cccc--chHHHHHHHHHHHHhhhhchHHHH--------
Confidence 245566666643200 0 0000 005667788888888876555443
Q ss_pred HHHHHHHh--cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHHh
Q 004225 635 GPLVDLLQ--NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL-YADPEIVTICLKGLENILKV 705 (767)
Q Consensus 635 ~~L~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~ 705 (767)
+.+.++.. ..++++|..|+.+|....- +....+. +...+. +++.+|..-....|.++...
T Consensus 515 ~il~~i~~n~~e~~EvRiaA~~~Lm~t~P--~~~~l~~---------ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 515 EIVLPIFLNVAIKSELRIRSCIVFFESKP--SVALVSM---------VAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHTCC--CHHHHHH---------HHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHCc--CHHHHHH---------HHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 45667774 3467888888887754322 3333333 222333 35666666666666666653
No 285
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=88.02 E-value=1.2 Score=37.54 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=56.0
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHH-hhchHHHHHHHhcCCC--------hHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVE-AAEGFKKIEDLKRHDS--------NGI 746 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~l~~l~~~~~--------~~v 746 (767)
+++.|.+-++++++.++.+|+..|..++..+.. .+...++ ....+..+.++...++ ..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~------------~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V 117 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS------------EFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV 117 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH------------HHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH------------HHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence 577788888888999999999999999976543 3444443 3334444444443333 569
Q ss_pred HHHHHHHHHHhcCCCccc
Q 004225 747 CEKAVKILEIYWSCGVIG 764 (767)
Q Consensus 747 ~~~a~~~l~~~~~~~~~~ 764 (767)
+.+|.++++-+|+.+.+.
T Consensus 118 R~~AkEl~~ll~d~~~~~ 135 (140)
T 1vdy_A 118 RETAHETISAIFSEENGS 135 (140)
T ss_dssp HHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHhCcCCCC
Confidence 999999999999998765
No 286
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.94 E-value=5.1 Score=40.92 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=90.2
Q ss_pred hhhHHHHHHHhhhccCCHHHHHHHHH-cCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHH-HHHHH----------
Q 004225 605 GIAKEACRTISNITAGNREQIQVVID-AGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ-IKYLV---------- 672 (767)
Q Consensus 605 ~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~l~---------- 672 (767)
....+++.++..+... ......++. ..++..+...+.+.++.++..+...|+.++....+++ ...++
T Consensus 73 ~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 3445555666555443 445555554 4568888888888889999999888877776432121 22221
Q ss_pred HcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHH
Q 004225 673 RKGCIKPLCDLLL-YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEK 749 (767)
Q Consensus 673 ~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 749 (767)
+..-+..+++.++ +.+.+.+..++..|-.++...++.. .--..+..|...|..+.+..+....++++...
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~-------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 2346777888887 4566777777777766666544322 33457788889999999999988888877644
No 287
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.68 E-value=36 Score=34.38 Aligned_cols=102 Identities=11% Similarity=0.036 Sum_probs=51.4
Q ss_pred ccccccEEEecCCCccccccCC-CCcCCCCCEEEeccCccchhhcCchhhhccccCcEEeEccccccchhcccccccccc
Q 004225 198 VTNNLVILRVKGCDHLVNLVPP-STSFQNLTNMVVSRCNNLKIVLTSLIAKTLVRLRYMKIKSCDRITEIVQGDDVVAKD 276 (767)
Q Consensus 198 ~~~~L~~L~i~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 276 (767)
.+.+|+.+.+-+. ++.+... ...+.+|+.+.+.. .++.+.. ..+.++++|+.+.+.+.. ++.+.......
T Consensus 238 ~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~-~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~--- 308 (379)
T 4h09_A 238 GMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPY-LLCSGCSNLTKVVMDNSA-IETLEPRVFMD--- 308 (379)
T ss_dssp TCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECT-TTTTTCTTCCEEEECCTT-CCEECTTTTTT---
T ss_pred CCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccc-cccccccccccccccccc-cceehhhhhcC---
Confidence 3556666666431 2222221 23456677777743 3444422 234567777777775432 33443332210
Q ss_pred ccccccccceEeecCCCCcccccCCCccccCCccceEee
Q 004225 277 EVITFRELKELKLVDLERLTSFCSGNCAFKFPSLERLVV 315 (767)
Q Consensus 277 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i 315 (767)
+.+|+++.+.+ +++.+... +...|++|+.+.+
T Consensus 309 ----c~~L~~i~lp~--~l~~I~~~-aF~~C~~L~~i~i 340 (379)
T 4h09_A 309 ----CVKLSSVTLPT--ALKTIQVY-AFKNCKALSTISY 340 (379)
T ss_dssp ----CTTCCEEECCT--TCCEECTT-TTTTCTTCCCCCC
T ss_pred ----CCCCCEEEcCc--cccEEHHH-HhhCCCCCCEEEE
Confidence 56777776642 45555532 2345666666655
No 288
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=83.50 E-value=22 Score=33.20 Aligned_cols=124 Identities=12% Similarity=0.164 Sum_probs=77.1
Q ss_pred hhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHH
Q 004225 429 ENTNVVIDGGAVPIFVKLLSS-----------PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSM 497 (767)
Q Consensus 429 ~~~~~~~~~~~l~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 497 (767)
.+.+.+ ..+++..|+.+|.. .+.+.+..++.+|..+..........+-..+++..+...+ .++++.+
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~~ 112 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNM 112 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCchH
Confidence 455555 35667777776642 1456788889999888754333333344456788888888 8889999
Q ss_pred HHHHHHHHHhhcCCCCCCC-ccch------------hchHHHHHHHhc-CCCHHHHHHHHHHHHhhccCCh
Q 004225 498 LRNATKTLSRFCQGKPEPP-FDQV------------RPALPALAQLVH-SNDNDVLRYACEALSCLSDGTN 554 (767)
Q Consensus 498 ~~~~~~~L~~l~~~~~~~~-~~~~------------~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 554 (767)
+..++..|.-+|..+.... ...+ ..-...++..+. +.+.+.+.+++..+..+....+
T Consensus 113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCC
Confidence 9999988888887653111 1111 112223444454 3456777777777776666654
No 289
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.87 E-value=2 Score=36.54 Aligned_cols=74 Identities=5% Similarity=0.010 Sum_probs=57.1
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 706 (767)
++..+..-+.+.++.++..|...|-.++..+.......+....++.-|..+++..++.|+..++..+......-
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 35567777888899999999888888877666665555555667777888887788999999999998877643
No 290
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.56 E-value=5.5 Score=33.77 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=53.4
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCCChHHHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHDSNGICEKAVKILE 755 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 755 (767)
+++.|.+-+.++++.++..|+..|..++++.+.. +...+....+++.+..+....++.|++++..++.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 5666777788899999999999999999875443 3334444555666777776788999999999998
Q ss_pred Hh
Q 004225 756 IY 757 (767)
Q Consensus 756 ~~ 757 (767)
.+
T Consensus 111 ~W 112 (140)
T 3ldz_A 111 EW 112 (140)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 291
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=81.42 E-value=30 Score=35.05 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=90.6
Q ss_pred hhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHH
Q 004225 429 ENTNVVIDGGAVPIFVKLLSS-----------PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSM 497 (767)
Q Consensus 429 ~~~~~~~~~~~l~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 497 (767)
.+.+.+. .+++..|+.+|.. .+...+..++.+|..+..........+-...++..+...+ .+..+.+
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~~ 178 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNM 178 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchHH
Confidence 5556665 5678888887741 3457888899999988754333333444456788888888 8889999
Q ss_pred HHHHHHHHHhhcCCCC-CC-Cccch-----------hchHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChh------HH
Q 004225 498 LRNATKTLSRFCQGKP-EP-PFDQV-----------RPALPALAQLVHS-NDNDVLRYACEALSCLSDGTND------KI 557 (767)
Q Consensus 498 ~~~~~~~L~~l~~~~~-~~-~~~~~-----------~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~~ 557 (767)
+..++..|.-+|..+. .- ...+. ..-...++..+.+ .+.+.+.+++..+..+....++ ..
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR 258 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 258 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999998887653 11 11111 1123445556654 4677777777777777666542 12
Q ss_pred HHHHhcCcHHHHHHHhcCCC
Q 004225 558 QAVIEADVCPRLVKLLLHPL 577 (767)
Q Consensus 558 ~~~~~~~~~~~L~~lL~~~~ 577 (767)
..+...|+.+.+-+ ++..+
T Consensus 259 ~ef~~~Gl~~il~~-lr~~~ 277 (383)
T 3eg5_B 259 SELMRLGLHQVLQE-LREIE 277 (383)
T ss_dssp HHHHHTTHHHHHHH-HTTSC
T ss_pred HHHHHCChHHHHHH-HhcCC
Confidence 23344455554444 55543
No 292
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.32 E-value=4.8 Score=35.18 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=54.0
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC-CChHHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH-DSNGICEKAVKIL 754 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l 754 (767)
+++.|.+-++++++.++..|+..|..+++..... +...+....+++.+..+... .++.|++++..++
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 4566777788899999999999999999875432 34455556667777777765 6789999999999
Q ss_pred HHh
Q 004225 755 EIY 757 (767)
Q Consensus 755 ~~~ 757 (767)
..+
T Consensus 121 ~~W 123 (163)
T 1x5b_A 121 VEW 123 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 293
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=81.23 E-value=2.7 Score=36.10 Aligned_cols=93 Identities=8% Similarity=-0.006 Sum_probs=67.8
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC------CCHHHHHHHHHHHHHHHHhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY------ADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~aL~~l~~~~ 706 (767)
++..+..-+++.++.++..|...|-.++..+.......+....++.-|++++.. .++.|+..++..+......-
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 355677778889999999999999988887777766666677788888888863 57899999999999888753
Q ss_pred hhhhccCCccccccHHHHHHHhhchH
Q 004225 707 EAEMNTGTANRYFNHYARLVEAAEGF 732 (767)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~l~~~g~~ 732 (767)
.... ........|...|.+
T Consensus 129 ~~~p-------~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 129 PEEV-------KIAEAYQMLKKQGIV 147 (149)
T ss_dssp TTCH-------HHHHHHHHHHHTTCC
T ss_pred CCCc-------hHHHHHHHHHHCcCc
Confidence 3222 233345555555543
No 294
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=80.52 E-value=8.8 Score=36.95 Aligned_cols=134 Identities=8% Similarity=0.162 Sum_probs=83.6
Q ss_pred hhHHHHHHHhhhccCCHHHHHHHH-HcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHH--cCChHHHHh
Q 004225 606 IAKEACRTISNITAGNREQIQVVI-DAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVR--KGCIKPLCD 682 (767)
Q Consensus 606 v~~~a~~~l~nl~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~--~~~i~~L~~ 682 (767)
....|+..|..++.......+.+- +-.++..|+ +.....+.+++.|+.+++..... +|.....+.. ..++..++.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN-NP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN-NPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc-CHHHHHHHHHhChhHHHHHHH
Confidence 455666677777665444444332 222333333 22344567899999999998887 8998887776 355555554
Q ss_pred hhcC-------CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcCC--ChHHHHHHHHH
Q 004225 683 LLLY-------ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRHD--SNGICEKAVKI 753 (767)
Q Consensus 683 ll~~-------~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~ 753 (767)
-+.. ...-++++-+.+|.-++..... + ...+++.|.++..-+ +++++.++..+
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~-----------------F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~l 183 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSED-----------------L-PIYSTVVLQNVYERNNKDKQLQIKVLEL 183 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT-----------------C---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChHh-----------------h-hhccHHHHHHHHccCCCCHHHHHHHHHH
Confidence 4432 2345666677777777754211 1 122345555555444 89999999999
Q ss_pred HHHhcC
Q 004225 754 LEIYWS 759 (767)
Q Consensus 754 l~~~~~ 759 (767)
+..+|.
T Consensus 184 i~d~f~ 189 (315)
T 3qml_C 184 ISKILK 189 (315)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 999985
No 295
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.65 E-value=1.6 Score=36.67 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=19.1
Q ss_pred CCceeeeeccCCcceEEeccchhhcccccCCCCccceeeccccc
Q 004225 33 QLQCIEIVGCPVLEELIVMDNQEERKKNIVMFPQLQYLKMSDLE 76 (767)
Q Consensus 33 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 76 (767)
+|++|+++++. ++.+.. ..+..+++|++|+|.+.|
T Consensus 32 ~l~~L~Ls~N~-l~~l~~--------~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPP--------GLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCT--------TTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccCh--------hhhhhccccCEEEecCCC
Confidence 47777776664 443310 123345677777776643
No 296
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=79.00 E-value=15 Score=34.76 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHH
Q 004225 647 FTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLV 726 (767)
Q Consensus 647 ~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l 726 (767)
+.|.....-+..++...++.... .+++.++.+..+.+.++|......|...+.... .+...
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-------------~l~~~- 90 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-------------ELLPH- 90 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-------------GGHHH-
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-------------HHHHH-
Confidence 56666666666666654444322 256667777677788888888888877774311 12222
Q ss_pred HhhchHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 004225 727 EAAEGFKKIEDLKRHDSNGICEKAVKILEIYWS 759 (767)
Q Consensus 727 ~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 759 (767)
.++.|..+++++++.|.++|+.+...+|+
T Consensus 91 ----~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 91 ----VINVVSMLLRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp ----HHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 25677777888888888888888877764
No 297
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=78.92 E-value=17 Score=42.82 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=75.9
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHHhc----CCchhHHHHHhcCCHHHHHHHHc---cCCChHHHHHHHHHHHh
Q 004225 439 AVPIFVKLLSS----PSDDVREKAVWALGNIAR----SSPRDRDLVLSEKALIPLLAQLN---KHAKPSMLRNATKTLSR 507 (767)
Q Consensus 439 ~l~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~~~~~L~~ 507 (767)
.+..+..++++ .++.++..|+-++++++. ..+.+. ...++.+.+.+. ...+.+-+..++.+|+|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 34556667765 567788888888888773 211111 112344444432 55677888999999999
Q ss_pred hcCCCCCCCccchhchHHHHHHHhcC-------CCHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 508 FCQGKPEPPFDQVRPALPALAQLVHS-------NDNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 508 l~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
+-.. ..++.+..++.. ....++.+|+++|..+....+...+ +.+.++..+...
T Consensus 467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e 526 (1056)
T 1lsh_A 467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAI 526 (1056)
T ss_dssp HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTS
T ss_pred cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCC
Confidence 9864 367777777742 2357889999999999976554443 446677754433
No 298
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=78.81 E-value=45 Score=31.52 Aligned_cols=190 Identities=10% Similarity=0.078 Sum_probs=118.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
+-.+++..+....+.+...++-.+.++ ..... .-..+++.++.+..+.+ .++|...+..+...+...... -..+
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~--ll~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l--~~~~ 91 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGSCAE--LAEEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVEL--LPHV 91 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG--GHHHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGG--HHHH
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh--HHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 455555555433478899999999987 43322 22346777777766666 899999999998888721111 1235
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHh--------cCCc------hhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHH
Q 004225 440 VPIFVKLLSSPSDDVREKAVWALGNIA--------RSSP------RDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTL 505 (767)
Q Consensus 440 l~~L~~lL~~~~~~v~~~a~~~L~nl~--------~~~~------~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L 505 (767)
++.|..++.++|+.+...++.+.+++. .... ...+.+.. .-..+++.+ ++.+..++-.|+..+
T Consensus 92 l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~--lK~~Il~~~-~s~n~gvkl~~iKF~ 168 (257)
T 3gs3_A 92 INVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL--IKAQILDMI-DNENDGIRTNAIKFL 168 (257)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH--HHHHHHHGG-GSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH--HHHHHHHHH-ccCCcchHHHHHHHH
Confidence 778888899899999999988887765 1111 11111111 234445555 778899999999887
Q ss_pred Hhhc----CCCCCC-----C-----------cc-------chhchHHHHHHHhcCC--CHHHHHHHHHHHHhhccCChhH
Q 004225 506 SRFC----QGKPEP-----P-----------FD-------QVRPALPALAQLVHSN--DNDVLRYACEALSCLSDGTNDK 556 (767)
Q Consensus 506 ~~l~----~~~~~~-----~-----------~~-------~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~ 556 (767)
..+. ..++.. + .. ...+.+..|+.++.+. +......++.+|+.++..-+..
T Consensus 169 e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~ 248 (257)
T 3gs3_A 169 EGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIF 248 (257)
T ss_dssp HHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHH
Confidence 7643 111110 0 00 0145667777766654 3445667888888887666544
Q ss_pred HH
Q 004225 557 IQ 558 (767)
Q Consensus 557 ~~ 558 (767)
..
T Consensus 249 ~~ 250 (257)
T 3gs3_A 249 MG 250 (257)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 299
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=78.75 E-value=58 Score=32.81 Aligned_cols=178 Identities=11% Similarity=0.121 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhc-CCChHHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCCCCH
Q 004225 374 GLQLEATTWFRKLL-LPPSEKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSSPSD 452 (767)
Q Consensus 374 ~~~~~a~~~L~~l~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~~~~ 452 (767)
..+...++-.+.++ ..... .-..+++.++++..+.+ .++|...+..+...+....+.. ..+++.|..+|.+.++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps--Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~--~~~l~~L~~LL~d~d~ 114 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT--LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELL--LKLIANLNMLLRDENV 114 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG--GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCH
Confidence 57888888888876 33322 34578899999888888 9999999999988887222212 2357788888988999
Q ss_pred HHHHHHHHHHHHHhc--------CCc------hhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhc--CC--CCC
Q 004225 453 DVREKAVWALGNIAR--------SSP------RDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFC--QG--KPE 514 (767)
Q Consensus 453 ~v~~~a~~~L~nl~~--------~~~------~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~--~~--~~~ 514 (767)
.+...++.+.+++.. ... ...+.+.. +-..++.++ ++.+..++-.|+..+..+. .. .+.
T Consensus 115 ~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~--lK~~Il~~~-ds~n~GVrl~aiKFle~VIl~qS~~~~d 191 (386)
T 3o2t_A 115 NVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSA--MAGDIILLL-DSDNDGIRTHAIKFVEGLIVTLSPRMAD 191 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH--HHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH--HHHHHHHHh-ccCCcchHHHHHHHHHHHHHHhCCCCCC
Confidence 999888888877651 111 11111111 233445555 7788999999998877643 11 100
Q ss_pred CC--------cc------------------chhchHHHHHHHhcCC--CHHHHHHHHHHHHhhccCChhHHHH
Q 004225 515 PP--------FD------------------QVRPALPALAQLVHSN--DNDVLRYACEALSCLSDGTNDKIQA 559 (767)
Q Consensus 515 ~~--------~~------------------~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~ 559 (767)
.+ .. ...+.+..|+..+..+ +......++.+|+.|+..-+.....
T Consensus 192 ~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~r 264 (386)
T 3o2t_A 192 SEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSE 264 (386)
T ss_dssp CCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred cccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHH
Confidence 00 00 0146677777777753 3455667888888888776655443
No 300
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=77.54 E-value=7.6 Score=34.22 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=55.1
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC------CChHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH------DSNGICEK 749 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~ 749 (767)
++..|.+-++++++.++..|+..|..++++.+.. +...+....+++.|..+... .+++|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 4566777788899999999999999999975432 44556666778888888753 46889999
Q ss_pred HHHHHHHh
Q 004225 750 AVKILEIY 757 (767)
Q Consensus 750 a~~~l~~~ 757 (767)
+..++..+
T Consensus 119 il~li~~W 126 (171)
T 1juq_A 119 VIELLYSW 126 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 301
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=77.27 E-value=3.7 Score=35.89 Aligned_cols=73 Identities=4% Similarity=-0.002 Sum_probs=57.2
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC-CCHHHHHHHHHHHHHHHHh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY-ADPEIVTICLKGLENILKV 705 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~aL~~l~~~ 705 (767)
++..+.+-+.+.++.++..|...|-.++..+.......+...+++..|+.++.. .++.|+..++..+......
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 345667777888999999999988888887666666666666788888888875 6789999999988877764
No 302
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=76.72 E-value=7.7 Score=33.22 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=55.3
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC------CChHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH------DSNGICEK 749 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~ 749 (767)
++..|..-++++++.++..|+..|..++++.+. .+...+....+++.|..+... .+++|+++
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 106 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE------------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR 106 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence 466677777899999999999999999987543 245556667778888888764 47899999
Q ss_pred HHHHHHHh
Q 004225 750 AVKILEIY 757 (767)
Q Consensus 750 a~~~l~~~ 757 (767)
+..++..+
T Consensus 107 il~li~~W 114 (148)
T 1mhq_A 107 VIEILFSW 114 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 303
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=76.61 E-value=5.3 Score=34.26 Aligned_cols=74 Identities=9% Similarity=-0.090 Sum_probs=59.7
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC------CCHHHHHHHHHHHHHHHHhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY------ADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~aL~~l~~~~ 706 (767)
++..+..-+++.++.++..|...|-.++..+.......+....++.-|++++.. .++.|+..++..+......-
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 355677778899999999999999999887666766777777888889988863 47899999999998887643
No 304
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=74.64 E-value=11 Score=32.29 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=54.8
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhcC------CChHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKRH------DSNGICEK 749 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~ 749 (767)
++..|..-+.++++.++..|+..|..++++.+.. +...+....+++.|..+... .++.|+++
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 116 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK 116 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence 4666767778899999999999999999876543 34555566677888888753 57889999
Q ss_pred HHHHHHHh
Q 004225 750 AVKILEIY 757 (767)
Q Consensus 750 a~~~l~~~ 757 (767)
+..++..+
T Consensus 117 il~li~~W 124 (149)
T 3g2s_A 117 ILELLYSW 124 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 305
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=73.67 E-value=35 Score=35.18 Aligned_cols=235 Identities=15% Similarity=0.095 Sum_probs=120.6
Q ss_pred HHHHhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhc
Q 004225 392 EKVIQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIAR 467 (767)
Q Consensus 392 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~ 467 (767)
...+....+..|+.++.++| +..|...-.+|..+.. ..|..+. ..+-..+.+++-. ....-....+.+++.+..
T Consensus 156 k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fi~e~e~~nGIaeLLeilgSIin 233 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIIN 233 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHH-HHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred hhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence 44456677889999999999 9999999999988877 3333332 1223445555533 223333567778888876
Q ss_pred CCchhHHHHHhcCCHHHHHHHHccCCC-hHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHH
Q 004225 468 SSPRDRDLVLSEKALIPLLAQLNKHAK-PSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEAL 546 (767)
Q Consensus 468 ~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 546 (767)
+....-+.-...-....++.+. .... ......-..++..+...++. ....++..+++.=-.++..-...-+.-+
T Consensus 234 Gfa~PLKeehk~fl~~vLlPLh-k~~~l~~y~~qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~tns~KevlFL~el 308 (449)
T 2npp_B 234 GFALPLKEEHKIFLLKVLLPLH-KVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVMALLKYWPKTHSPKEVMFLNEL 308 (449)
T ss_dssp SCCSSCCHHHHHHHHHTTGGGG-GSSCGGGTHHHHHHHHHHHHHHCGG----GHHHHHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHH-ccchhHHhHHHHHHHHHHHHhcCcH----hHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 5431111011100123344444 2222 22233455555555544322 2223333343333344433333444445
Q ss_pred HhhccC-ChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccCCHHHH
Q 004225 547 SCLSDG-TNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAGNREQI 625 (767)
Q Consensus 547 ~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~~~~~~ 625 (767)
..+.+. .+...+.+. ..++..+.+.+.+.+. .|.+.|+....| +..
T Consensus 309 eeile~~~~~ef~~i~-~~lF~~la~ci~S~hf--------------------------qVAErAL~~w~N------~~i 355 (449)
T 2npp_B 309 EEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHF--------------------------QVAERALYYWNN------EYI 355 (449)
T ss_dssp HHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCH--------------------------HHHHHHHGGGGC------HHH
T ss_pred HHHHHhCCHHHHHHHH-HHHHHHHHHHHcCCCH--------------------------HHHHHHHHHHCC------HHH
Confidence 555543 233333332 2466777777777776 344444433321 111
Q ss_pred HHHHH---cCCHHHHHHHHhcC-----CchhHHHHHHHHHHhhcCCCHHH
Q 004225 626 QVVID---AGVIGPLVDLLQNA-----EFFTKKEAARAISNAISGGTHEQ 667 (767)
Q Consensus 626 ~~~~~---~~~i~~L~~ll~~~-----~~~v~~~a~~~L~nl~~~~~~~~ 667 (767)
..++. ..++|.++..+... +..|+..|..++.-+... +++.
T Consensus 356 ~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~-d~~l 404 (449)
T 2npp_B 356 MSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM-NQKL 404 (449)
T ss_dssp HHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-CHHH
Confidence 11221 12456676665432 557888888888766654 4443
No 306
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=71.02 E-value=6.1 Score=34.82 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=58.0
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC------CCHHHHHHHHHHHHHHHHhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY------ADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~aL~~l~~~~ 706 (767)
++..|.+-+++.++.++..|...|-.++..+.......+.+..++.-|+.++.. .++.|+..++..|......-
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 355677778889999999999999888876555555566667788888888862 46799999999999887653
No 307
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=70.29 E-value=20 Score=36.31 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=87.6
Q ss_pred HhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCc
Q 004225 395 IQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSP 470 (767)
Q Consensus 395 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~ 470 (767)
+....+-.|+.++.++| +..|...-.+|..+.. ..|..+. ..+-..+.+++-. ....-....+.+++.+..+..
T Consensus 126 id~~Fi~~Ll~lfdSeD-prER~~LktiLhrIY~kf~~~R~~Ir-k~innif~~fiye~e~~~GIaeLLeilgsIinGfa 203 (403)
T 3fga_B 126 IDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 203 (403)
T ss_dssp SCHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccC
Confidence 34456788999999999 9999999999998887 3333222 2223445555433 222223456677777765432
Q ss_pred hhHHHHHhcCCHHHHHHHHccCCC-hHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 004225 471 RDRDLVLSEKALIPLLAQLNKHAK-PSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCL 549 (767)
Q Consensus 471 ~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 549 (767)
..-+.-...-....++.+. .... .........++..+...++. ....++..+++.=-.++..-...-+.-+..+
T Consensus 204 ~PLkeehk~fl~~vLlPLH-k~~~~~~y~~qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~tns~KevlFL~Ele~i 278 (403)
T 3fga_B 204 LPLKEEHKIFLLKVLLPLH-KVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVMALLKYWPKTHSPKEVMFLNELEEI 278 (403)
T ss_dssp SSCCHHHHHHHHHTTTGGG-GSTTGGGTHHHHHHHHHHHHHHCGG----GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHH-cCCcchhhHHHHHHHHHHHHHhCch----hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 1110000000123334444 2222 22334555566666544322 2223333333333344443333444445555
Q ss_pred ccCC-hhHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 550 SDGT-NDKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 550 ~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
.+.- +...+.+. ..++..+.+.+.+...
T Consensus 279 Le~~~~~~f~~i~-~~lf~~la~ci~S~hf 307 (403)
T 3fga_B 279 LDVIEPSEFVKIM-EPLFRQLAKCVSSPHF 307 (403)
T ss_dssp HTTCCHHHHHHHH-HHHHHHHHHHHTCSCH
T ss_pred HHhCCHHHHHHHH-HHHHHHHHHHHCCCCH
Confidence 5432 23333332 2466677777777776
No 308
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=69.32 E-value=57 Score=33.08 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHH
Q 004225 535 DNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTI 614 (767)
Q Consensus 535 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l 614 (767)
+......++.||..++.........+...+++..++..+.+... .++..++..|+.++..++... ....++.++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~--~~r~~vleLL~alc~~~~~~G----~~~~VL~Al 144 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP--NMMIDAAKLLSALCILPQPED----MNERVLEAM 144 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH--HHHHHHHHHHHHHHTCCSSTT----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc--hHHHHHHHHHHHHHcCCCCCC----hHHHHHHHH
Confidence 46778889999999987765554444456788999999988887 888888888888875443110 123334444
Q ss_pred hhhccCCHHHHHHHHHcCCHHHHHHHHhcC-CchhHHHHHHHHHHhhcCCC-HHH----HHHHHHcCChHHHHhhhcCCC
Q 004225 615 SNITAGNREQIQVVIDAGVIGPLVDLLQNA-EFFTKKEAARAISNAISGGT-HEQ----IKYLVRKGCIKPLCDLLLYAD 688 (767)
Q Consensus 615 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~-~~~----~~~l~~~~~i~~L~~ll~~~~ 688 (767)
.+.. ..-+..-+..+++.+... +.+.+..+...+..++.... .+. ...+...|+.+.+-.+-...+
T Consensus 145 ~~~~--------~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~ 216 (386)
T 2bnx_A 145 TERA--------EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIEN 216 (386)
T ss_dssp HHHH--------HHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCC
T ss_pred HHHH--------HhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCC
Confidence 4321 122345677788888744 44555555544444444322 222 234555676666665555567
Q ss_pred HHHHHH
Q 004225 689 PEIVTI 694 (767)
Q Consensus 689 ~~v~~~ 694 (767)
+++..+
T Consensus 217 ~~L~~Q 222 (386)
T 2bnx_A 217 EDMKVQ 222 (386)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 666544
No 309
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=68.59 E-value=29 Score=35.02 Aligned_cols=89 Identities=10% Similarity=0.104 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHH
Q 004225 647 FTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLV 726 (767)
Q Consensus 647 ~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l 726 (767)
+.|.....-+..++...++.. -.++++.++.+..+.+.++|..++..|...+... .+ +..
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsL-----l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~------------~e-l~~-- 99 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTL-----LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD------------IE-LLL-- 99 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGG-----GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC------------GG-GHH--
T ss_pred HHHHHHHHHHHHHHhccCHHH-----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH------------HH-HHH--
Confidence 456666666666655434431 1357888888888888899999888888877521 11 122
Q ss_pred HhhchHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 004225 727 EAAEGFKKIEDLKRHDSNGICEKAVKILEIYW 758 (767)
Q Consensus 727 ~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 758 (767)
-.++.|..+++++++.|.++|+.+...+|
T Consensus 100 ---~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 100 ---KLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 22567777888888888888888888777
No 310
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=67.76 E-value=38 Score=32.61 Aligned_cols=131 Identities=11% Similarity=0.111 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHh--hhhHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc--CCHHHHHHH
Q 004225 415 LQLEAARALTNIAS--ENTNVVI--DGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSE--KALIPLLAQ 488 (767)
Q Consensus 415 ~~~~a~~~L~~l~~--~~~~~~~--~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~l 488 (767)
.-..|...|..++. ++=-.++ +...+..|+ +.....+.+++.|+.+++.-...+|...+.+.+. ..+..++.-
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHH
Confidence 34556666666666 2222233 222333333 3344677899999999999999999877766553 345555544
Q ss_pred Hcc---C---CChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCC--CHHHHHHHHHHHHhhc
Q 004225 489 LNK---H---AKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSN--DNDVLRYACEALSCLS 550 (767)
Q Consensus 489 l~~---~---~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 550 (767)
+.. . ....++...+.+|.-|...+.. + ....+..|.+++... +..++..++..+..+-
T Consensus 123 L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~--F--~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 123 LSNLNDSNHRSSNILIKRYLSILNELPVTSED--L--PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT--C----CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHhcChHh--h--hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 421 1 3446677778888888877521 1 233456666666655 7888888877776654
No 311
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=66.31 E-value=1.2e+02 Score=31.23 Aligned_cols=233 Identities=13% Similarity=0.058 Sum_probs=117.0
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCC
Q 004225 432 NVVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQG 511 (767)
Q Consensus 432 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 511 (767)
+..++...+..|+.+++++|+.-|...-.+|..+-+.....|..+.. .+-..+.+.+.......-....+.+++.+..+
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 44455667888999999999999999999998888665555554432 23344555554333333344556666666655
Q ss_pred CCCC-CccchhchHHHHHHHhcCCCHH-HHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHH
Q 004225 512 KPEP-PFDQVRPALPALAQLVHSNDND-VLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWT 589 (767)
Q Consensus 512 ~~~~-~~~~~~~~i~~L~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~ 589 (767)
-... +.....-....|+.+.+...-. --.....++..+...++..... .+-.++++-.. .
T Consensus 235 fa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~--t-------- 296 (449)
T 2npp_B 235 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPK--T-------- 296 (449)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCS--S--------
T ss_pred cCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH--------HHHHHHHhCCC--C--------
Confidence 4211 1122222233334444433211 1122333333333333222221 12222232211 0
Q ss_pred HhhhhccCCcceeehhhhHHHHH--HHhhhcc-CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHH
Q 004225 590 VRYIVKGDGFLTQCTGIAKEACR--TISNITA-GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHE 666 (767)
Q Consensus 590 L~~l~~~~~~~~~~l~v~~~a~~--~l~nl~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 666 (767)
...++.++ -+..+.. -.+...+.+.. .++..+...+.+.+..|...|.....| +
T Consensus 297 ---------------ns~KevlFL~eleeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N-------~ 353 (449)
T 2npp_B 297 ---------------HSPKEVMFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-------E 353 (449)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-------H
T ss_pred ---------------CchHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCC-------H
Confidence 11222221 1222332 23344433332 256777788888888888887644322 2
Q ss_pred HHHHHHHc---CChHHHHhhhc----C-CCHHHHHHHHHHHHHHHHhh
Q 004225 667 QIKYLVRK---GCIKPLCDLLL----Y-ADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 667 ~~~~l~~~---~~i~~L~~ll~----~-~~~~v~~~al~aL~~l~~~~ 706 (767)
....++.. .+++.++.-+. . =+..++..|..++.-+....
T Consensus 354 ~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 354 YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHC
Confidence 22223331 23455544432 2 26789999999998777643
No 312
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=63.01 E-value=1.3e+02 Score=30.35 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=111.4
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
..++...+-.|+.+++++|+.-|...-.+|..+-+.....|..+. ..+-..+.+.+.....-.-....+.+++.+..+-
T Consensus 124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Ir-k~innif~~fiye~e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence 334445677899999999999999999999988866555554332 2233444455433222222334444555544443
Q ss_pred CCC-CccchhchHHHHHHHhcCCCH-HHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHH
Q 004225 513 PEP-PFDQVRPALPALAQLVHSNDN-DVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTV 590 (767)
Q Consensus 513 ~~~-~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L 590 (767)
..+ +.....-....|+.+-+.... .--.....++......++..... .+-.++++-.. .
T Consensus 203 a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~--t--------- 263 (403)
T 3fga_B 203 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPK--T--------- 263 (403)
T ss_dssp CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCS--S---------
T ss_pred CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH--------HHHHHHHhCCC--C---------
Confidence 111 111111122333333333321 11122333333333333222221 12222222211 0
Q ss_pred hhhhccCCcceeehhhhHHHHH--HHhhhcc-CCHHHHHHHHHcCCHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHH
Q 004225 591 RYIVKGDGFLTQCTGIAKEACR--TISNITA-GNREQIQVVIDAGVIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQ 667 (767)
Q Consensus 591 ~~l~~~~~~~~~~l~v~~~a~~--~l~nl~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 667 (767)
...++.++ -+..+.. -.+...+.+.. .++..+...+.+.+..|...|..... + +.
T Consensus 264 --------------ns~KevlFL~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wn------N-e~ 321 (403)
T 3fga_B 264 --------------HSPKEVMFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWN------N-EY 321 (403)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGG------C-HH
T ss_pred --------------CcHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhc------c-HH
Confidence 11122221 1222222 22333333332 25677778888888888887665432 1 22
Q ss_pred HHHHHHc---CChHH----HHhhhcCC-CHHHHHHHHHHHHHHHHhhh
Q 004225 668 IKYLVRK---GCIKP----LCDLLLYA-DPEIVTICLKGLENILKVGE 707 (767)
Q Consensus 668 ~~~l~~~---~~i~~----L~~ll~~~-~~~v~~~al~aL~~l~~~~~ 707 (767)
...++.. .+++. |.+..+.. +..++..|..++..+.....
T Consensus 322 i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 322 IMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 2233322 23333 33333333 88999999999999876543
No 313
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.59 E-value=9.1 Score=35.59 Aligned_cols=74 Identities=9% Similarity=0.058 Sum_probs=56.5
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcC-CCHHHHHHHHHHHHHHHHhh
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLY-ADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~aL~~l~~~~ 706 (767)
++..|.+-+++.++.++..|...|-.++..+.......+....++..|..++.. .++.|+..++..+......-
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 355677777889999999999988888876555555555566677777777764 57899999999999887653
No 314
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.86 E-value=22 Score=32.75 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=51.0
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhc-CCChHHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKR-HDSNGICEKAVKIL 754 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l 754 (767)
++..|.+-+.++++.++..|+..|..++++.+.. +...+....+++.+..+.. ..+++|++++.+++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li 110 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4555666677899999999999999999875432 3334444455666666654 46789999999998
Q ss_pred HHh
Q 004225 755 EIY 757 (767)
Q Consensus 755 ~~~ 757 (767)
..+
T Consensus 111 ~~W 113 (220)
T 1dvp_A 111 QTW 113 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 866
No 315
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.33 E-value=17 Score=33.76 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=51.1
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhc-CCChHHHHHHHHHH
Q 004225 676 CIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKR-HDSNGICEKAVKIL 754 (767)
Q Consensus 676 ~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l 754 (767)
++..|.+-+.++++.++..|+..|..++++.+.. +...+....+++.|..+.. ..+++|++++..++
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li 113 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI 113 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4556667778899999999999999999876543 2333444455555665553 46788999999999
Q ss_pred HHh
Q 004225 755 EIY 757 (767)
Q Consensus 755 ~~~ 757 (767)
..+
T Consensus 114 ~~W 116 (226)
T 3zyq_A 114 QAW 116 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 316
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=58.49 E-value=42 Score=27.81 Aligned_cols=95 Identities=15% Similarity=0.079 Sum_probs=63.4
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICLKGLENILKVGEAEMNT 712 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~ 712 (767)
+++.|+..|++.+..+...++..|...-. . +++.+.++++++|.. ...|.|..+......
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~~----~---------l~p~I~~vl~s~D~~---W~ywil~~lv~~~~~---- 91 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQS----I---------AMPHILTILQGNDIM---WKYWVIKLMIPYLIY---- 91 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTHH----H---------HHHHHHHHHHSSCHH---HHHHHHHHHGGGCCH----
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHccH----h---------hHHHHHHHHHcCChH---HHHHHHHHHHHcCCH----
Confidence 57889999999999999988887775321 1 355566677776643 455666666543221
Q ss_pred CCccccccHHHHHHHhhchHHHHHHHhcCC-----ChHHHHHHHHHHHHhcCC
Q 004225 713 GTANRYFNHYARLVEAAEGFKKIEDLKRHD-----SNGICEKAVKILEIYWSC 760 (767)
Q Consensus 713 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-----~~~v~~~a~~~l~~~~~~ 760 (767)
..... ..+.|.++..++ ..++.+.|.++|++||++
T Consensus 92 --------~~~~~-----l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 92 --------PNKQL-----VKSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp --------HHHHH-----HHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred --------HHHHH-----HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 12223 356677777764 467999999999999974
No 317
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=57.64 E-value=30 Score=29.25 Aligned_cols=74 Identities=12% Similarity=0.040 Sum_probs=58.3
Q ss_pred HHHHHHHcCChHHHHhhhc---C---CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHhc
Q 004225 667 QIKYLVRKGCIKPLCDLLL---Y---ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLKR 740 (767)
Q Consensus 667 ~~~~l~~~~~i~~L~~ll~---~---~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~ 740 (767)
....+++.|++..+-.-++ + ++..+|...+.+|.++=. -.+.+.++|.-..+..+..
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI-----------------~~e~Lk~SglGkvv~~l~k 115 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI-----------------HKEHLVTSGVGKIVYFYSI 115 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC-----------------CHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC-----------------CHHHhhcCCCCcchhhhhc
Confidence 3467788898888888776 2 467899999999888621 1567889999899988887
Q ss_pred CC--ChHHHHHHHHHHHHh
Q 004225 741 HD--SNGICEKAVKILEIY 757 (767)
Q Consensus 741 ~~--~~~v~~~a~~~l~~~ 757 (767)
++ .++.++.|..+++++
T Consensus 116 ~~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 116 NPKESKEVRASAKALVQKW 134 (145)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHH
Confidence 74 578999999999876
No 318
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.15 E-value=35 Score=29.44 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=50.7
Q ss_pred ChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHH-HHHHhc---CCChHHHHHH
Q 004225 676 CIKPLCDLLL-YADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKK-IEDLKR---HDSNGICEKA 750 (767)
Q Consensus 676 ~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~---~~~~~v~~~a 750 (767)
+++.|.+-++ .+++.++..|+..|..++++.+.. +...+....+++. +..+.. .++..|++++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~------------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki 121 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR------------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKV 121 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH------------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 4556666676 589999999999999999875432 3444555666776 666653 2446899999
Q ss_pred HHHHHHh
Q 004225 751 VKILEIY 757 (767)
Q Consensus 751 ~~~l~~~ 757 (767)
..++..+
T Consensus 122 l~li~~W 128 (157)
T 1elk_A 122 LNLIQSW 128 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 319
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=55.01 E-value=13 Score=33.62 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=16.7
Q ss_pred CCccEEEeccCCccccccccccc--ccccCCCceeeeCCcc
Q 004225 92 PSLKELRISKCPEFMVRTTSIFT--ERVFPNLEKLKVDAKH 130 (767)
Q Consensus 92 ~~L~~L~l~~c~~l~~~~~~~~~--~~~l~~L~~L~l~~~~ 130 (767)
++|++|+++++..+.......+. ...-++|++|++++|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC
Confidence 45666666554333322111110 0133555666655554
No 320
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=53.22 E-value=92 Score=36.15 Aligned_cols=209 Identities=13% Similarity=0.080 Sum_probs=114.5
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHH-----hhccCChh
Q 004225 481 ALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALS-----CLSDGTND 555 (767)
Q Consensus 481 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~-----~l~~~~~~ 555 (767)
.+.-++++- .+.-.++|..|-.++......-+.........++..|-.-+...+.+-.+.|+.+|. ..+..+..
T Consensus 134 ll~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~ 212 (997)
T 1vsy_5 134 LLVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK 212 (997)
T ss_dssp HHHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH
T ss_pred HHHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH
Confidence 345566655 777889999999999988866444444444444444444334556666677777655 12222222
Q ss_pred HHHHHHhcCcHHHHHHHhcCCCCCCcccchHHHHHhhhhccCCcceeehhhhHHHHHHHhhhccC--------------C
Q 004225 556 KIQAVIEADVCPRLVKLLLHPLPFPFGLTPPLWTVRYIVKGDGFLTQCTGIAKEACRTISNITAG--------------N 621 (767)
Q Consensus 556 ~~~~~~~~~~~~~L~~lL~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~v~~~a~~~l~nl~~~--------------~ 621 (767)
... .+++.+++....+.+ .++.-+-.+...+..+-........+...+ +..+... .
T Consensus 213 ~~~-----~~~~ali~~~~~dKp--sI~~l~~~l~~~i~~~~~~p~~~~~~~~~~---~~~i~~~d~~i~~~~~~~~~~~ 282 (997)
T 1vsy_5 213 DIG-----RLIFLLIECCRVNEL--EIGMYADKILTDIVIGIKIPSSVCVISDQA---FLPLAPPDGTINLQVEAVKLAK 282 (997)
T ss_dssp HHH-----HHHHHHHHTCSCSSS--STTTHHHHHHHHHHTSCCCCCSCCCCCGGG---TGGGCCSCSSTTSHHHHHHHHT
T ss_pred HHH-----HHHHHHHHhCcCCCH--HHHHHHHHHHHHHHhcccCchHHHHHHHHH---HhccCCCcHHHHHHHHHHHHHH
Confidence 222 366777777777777 777777766555543221111000000000 0111000 0
Q ss_pred HHHHHHHHH--cCCHHHHHHHHh-cCC--chhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhcCCCHHHHHHHH
Q 004225 622 REQIQVVID--AGVIGPLVDLLQ-NAE--FFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLLYADPEIVTICL 696 (767)
Q Consensus 622 ~~~~~~~~~--~~~i~~L~~ll~-~~~--~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al 696 (767)
...++...+ .++...+++..+ ... .+....++..+.++....+.. ....+++.+++.+.++.|.+|..|+
T Consensus 283 ~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp~~R~~a~ 357 (997)
T 1vsy_5 283 KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHPEIIHLVV 357 (997)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCHHHHHHHH
Confidence 011111111 134445556653 345 788888888866666432111 1112566677888899999999999
Q ss_pred HHHHHHHHh
Q 004225 697 KGLENILKV 705 (767)
Q Consensus 697 ~aL~~l~~~ 705 (767)
.++..++..
T Consensus 358 ~~l~~il~~ 366 (997)
T 1vsy_5 358 KSLLSTCNK 366 (997)
T ss_dssp HHHTHHHHH
T ss_pred HHHHHHHHH
Confidence 999888865
No 321
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=49.93 E-value=12 Score=33.77 Aligned_cols=64 Identities=9% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCCccceeeccccccccc-----ccCCCCcccCCCCccEEEeccCCcccccccccccc--cccCCCceeeeCCcc
Q 004225 63 MFPQLQYLKMSDLEKFTS-----FCTGDLDILEFPSLKELRISKCPEFMVRTTSIFTE--RVFPNLEKLKVDAKH 130 (767)
Q Consensus 63 ~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~~l~~L~~L~l~~~~ 130 (767)
.-+.|++|++.++..+.+ +... ...-.+|++|++++|..- +.....++. ..-++|++|+++++.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~a---L~~N~~L~~L~L~~n~ig-d~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEA---ACNSKHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHH---HTTCSCCCEEECTTSCCB-HHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHH---HhhCCCcCEEEccCCCCC-hHHHHHHHHHHhcCCccCeEecCCCc
Confidence 346777777765433322 1100 112357788888776522 211111110 234667777777664
No 322
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=49.76 E-value=27 Score=30.14 Aligned_cols=73 Identities=10% Similarity=0.118 Sum_probs=54.1
Q ss_pred CHHHHHHHHh-cCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhhhcC---CCHHHHHHHHHHHHHHHHh
Q 004225 633 VIGPLVDLLQ-NAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKP-LCDLLLY---ADPEIVTICLKGLENILKV 705 (767)
Q Consensus 633 ~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~v~~~al~aL~~l~~~ 705 (767)
++..+..-++ +.++.++..|...|-.++..+.......+.+.+++.- |++++.. ....|+..++..+......
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 3455666776 4788999999998888888766666666666677776 7777742 3458999999888887764
No 323
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.97 E-value=28 Score=32.05 Aligned_cols=73 Identities=4% Similarity=-0.035 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhhc-CCCHHHHHHHHHHHHHHHHhh
Q 004225 634 IGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIKPLCDLLL-YADPEIVTICLKGLENILKVG 706 (767)
Q Consensus 634 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~aL~~l~~~~ 706 (767)
+..|..-|.+.++.++..|...|-.++..+.......+.+..++..|..++. ..+..|+..++..+......-
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 4556667788899999999999888887654444455555567777777776 357899999999988887653
No 324
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=44.40 E-value=31 Score=34.40 Aligned_cols=102 Identities=16% Similarity=0.235 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHhc-CCC-hHHHHhcC-chHHHHhhcc--------CCCCHHHHHHHHHHHHHHHh-hhhHHHHhC
Q 004225 370 SDDSGLQLEATTWFRKLL-LPP-SEKVIQSG-VVARFVEFLT--------REDNPQLQLEAARALTNIAS-ENTNVVIDG 437 (767)
Q Consensus 370 s~~~~~~~~a~~~L~~l~-~~~-~~~i~~~g-~i~~L~~ll~--------~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~ 437 (767)
+..+..++-+++.+.++. ++. ...++... ....+++.+. ..+ ..++..++..+.|++. -.+. -.+.
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~n-kNl~IA~ATL~lNlAv~~~~~-~~~~ 287 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQS-QNLAIAVSTLIFNYSALVTKG-NSDL 287 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHH-HHHHHHHHHHHHHHHHHHHHT-CSCT
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCC-chHHHHHHHHHHHHHHHHhcc-cchH
Confidence 567889999999999999 554 45555321 2333443331 123 6789999999999998 2211 0112
Q ss_pred CChHHHHHhhC---------CCCHHHHHHHHHHHHHHhcCCchhH
Q 004225 438 GAVPIFVKLLS---------SPSDDVREKAVWALGNIARSSPRDR 473 (767)
Q Consensus 438 ~~l~~L~~lL~---------~~~~~v~~~a~~~L~nl~~~~~~~~ 473 (767)
...+.+..++. ..|++..+.++.++|++....+..+
T Consensus 288 el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~ 332 (362)
T 3l3f_X 288 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 332 (362)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 34456666665 2588999999999999997555443
No 325
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=43.76 E-value=71 Score=32.54 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHhc-CCC-hHHHHhc-CchHHHHhhccCC-------CCHHHHHHHHHHHHHHHhhhhHHHHhCCC
Q 004225 370 SDDSGLQLEATTWFRKLL-LPP-SEKVIQS-GVVARFVEFLTRE-------DNPQLQLEAARALTNIASENTNVVIDGGA 439 (767)
Q Consensus 370 s~~~~~~~~a~~~L~~l~-~~~-~~~i~~~-g~i~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 439 (767)
+..+..++-+++.+.++. ++. ...++.. .....+++.+... .+..++..++..+.|++.-..+.-.+...
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~el 352 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 352 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTH
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHH
Confidence 567889999999999999 554 4555532 2344555544211 12678999999999999811110011234
Q ss_pred hHHHHHhhC---------CCCHHHHHHHHHHHHHHhcCCchhHH
Q 004225 440 VPIFVKLLS---------SPSDDVREKAVWALGNIARSSPRDRD 474 (767)
Q Consensus 440 l~~L~~lL~---------~~~~~v~~~a~~~L~nl~~~~~~~~~ 474 (767)
++.+..++. ..|++..+.++.++|++....+..++
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~ 396 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQ 396 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 456666665 25889999999999999975554443
No 326
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=40.57 E-value=1.5e+02 Score=34.31 Aligned_cols=184 Identities=12% Similarity=0.059 Sum_probs=104.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhc--CCChHHHHhcCchHHHHhhccC---CCCHHHHHHHHHHHH--HHHh-hhhH
Q 004225 361 LPGMLAGVWSDDSGLQLEATTWFRKLL--LPPSEKVIQSGVVARFVEFLTR---EDNPQLQLEAARALT--NIAS-ENTN 432 (767)
Q Consensus 361 i~~l~~~l~s~~~~~~~~a~~~L~~l~--~~~~~~i~~~g~i~~L~~ll~~---~~~~~~~~~a~~~L~--~l~~-~~~~ 432 (767)
+..+++.--|..++++..|-..|.... -+....++ +|.+++.|+. +.+.+.-..|+.+|. .+.. -..+
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d 210 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTD 210 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGC
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcC
Confidence 667777777999999999999999988 33344433 5666666644 222455555666554 2222 0111
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCch-----------------------------------hHHHHH
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPR-----------------------------------DRDLVL 477 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-----------------------------------~~~~~~ 477 (767)
.-.-...++.|++....+.+.++..+-.+...+...... .++...
T Consensus 211 ~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~ 290 (997)
T 1vsy_5 211 YKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYL 290 (997)
T ss_dssp HHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 111113567777776666666666665554444421100 000000
Q ss_pred h--cCCHHHHHHHHccCCC--hHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 004225 478 S--EKALIPLLAQLNKHAK--PSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSD 551 (767)
Q Consensus 478 ~--~g~i~~L~~ll~~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 551 (767)
+ .+....+++...+... ......++..+.++.... +......++..+++.+.++.+.++..+..++..+..
T Consensus 291 ~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~---d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~ 365 (997)
T 1vsy_5 291 SLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNL---ESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCN 365 (997)
T ss_dssp HHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCS---SCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 0 0122233344433344 566666666755555332 233445678888888899999999999988866553
No 327
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=40.50 E-value=35 Score=32.26 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHHhc-CCC-hHHHH-hcCchHHHHhhcc----CC---CCHHHHHHHHHHHHHHHh-hhhHHHHhCC
Q 004225 370 SDDSGLQLEATTWFRKLL-LPP-SEKVI-QSGVVARFVEFLT----RE---DNPQLQLEAARALTNIAS-ENTNVVIDGG 438 (767)
Q Consensus 370 s~~~~~~~~a~~~L~~l~-~~~-~~~i~-~~g~i~~L~~ll~----~~---~~~~~~~~a~~~L~~l~~-~~~~~~~~~~ 438 (767)
+..+..+.-+++.+.++. ++. .+.++ .......+++.+. +. .+..++..++..+.|++. -.... .+..
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~-~~~e 179 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN-SDLE 179 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC-SCTT
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhcc-chHH
Confidence 557789999999999999 555 45444 2223344444332 11 126899999999999998 11100 0123
Q ss_pred ChHHHHHhhCC---------CCHHHHHHHHHHHHHHhcCCchh
Q 004225 439 AVPIFVKLLSS---------PSDDVREKAVWALGNIARSSPRD 472 (767)
Q Consensus 439 ~l~~L~~lL~~---------~~~~v~~~a~~~L~nl~~~~~~~ 472 (767)
....++.++.. .|++..+.++-++|++...++..
T Consensus 180 ~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~ 222 (253)
T 3gae_A 180 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 222 (253)
T ss_dssp HHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHH
Confidence 44555665542 37889999999999999655443
No 328
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=38.00 E-value=36 Score=28.19 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=17.5
Q ss_pred CCccEEEeccCCcccccccccccccccCCCceeeeCCcc
Q 004225 92 PSLKELRISKCPEFMVRTTSIFTERVFPNLEKLKVDAKH 130 (767)
Q Consensus 92 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 130 (767)
++|++|++++.. ++......|. .+++|+.|++.+++
T Consensus 31 ~~l~~L~Ls~N~-l~~l~~~~f~--~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNN-LTALPPGLLD--ALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSC-CSSCCTTTGG--GCTTCCEEECCSSC
T ss_pred cCCCEEECCCCc-CCccChhhhh--hccccCEEEecCCC
Confidence 355666665532 3333333332 45566666666554
No 329
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=37.86 E-value=24 Score=35.56 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=49.3
Q ss_pred HhcCchHHHHhhccCCCCHHHHHHHHHHHHHHHh---hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCc
Q 004225 395 IQSGVVARFVEFLTREDNPQLQLEAARALTNIAS---ENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSP 470 (767)
Q Consensus 395 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~ 470 (767)
+....+..|+.++.++| +..|...-.+|..+.. ..|..+ ...+-..+.+++.. ....-....+.+++.+..+..
T Consensus 171 id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~I-rk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa 248 (392)
T 2jak_A 171 IDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYI-RKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 248 (392)
T ss_dssp SCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccC
Confidence 44567888999999999 9999999999988877 333333 22334556666644 223334567778888776543
No 330
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=37.57 E-value=69 Score=26.85 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=50.7
Q ss_pred CHHHHHHHHhcCCchhHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhhhcCCC--------HHHHHHHHHHHHHHH
Q 004225 633 VIGPLVDLLQNAEFFTKKEAARAISNAISGGTHEQIKYLVRK-GCIKPLCDLLLYAD--------PEIVTICLKGLENIL 703 (767)
Q Consensus 633 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~--------~~v~~~al~aL~~l~ 703 (767)
+++.|.+-|+..++.++..|...|-.++..+++.....+.+. ..|+.+...--.++ ..||..|-.++.-+.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 567888889999999999999999999999888888776663 22333322211112 367777777776665
Q ss_pred H
Q 004225 704 K 704 (767)
Q Consensus 704 ~ 704 (767)
.
T Consensus 130 d 130 (140)
T 1vdy_A 130 S 130 (140)
T ss_dssp C
T ss_pred C
Confidence 4
No 331
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=34.26 E-value=1.2e+02 Score=26.34 Aligned_cols=76 Identities=8% Similarity=0.027 Sum_probs=58.7
Q ss_pred HHHHHHHHcCChHHHHhhhc---C---CCHHHHHHHHHHHHHHHHhhhhhhccCCccccccHHHHHHHhhchHHHHHHHh
Q 004225 666 EQIKYLVRKGCIKPLCDLLL---Y---ADPEIVTICLKGLENILKVGEAEMNTGTANRYFNHYARLVEAAEGFKKIEDLK 739 (767)
Q Consensus 666 ~~~~~l~~~~~i~~L~~ll~---~---~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~ 739 (767)
+....+++.|++..+-.-|+ + ++..++...+.+|..+=. -...|.++|.-..+..+.
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI-----------------~~e~Lk~SglGkvV~~l~ 129 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV-----------------KTEHLKESGLGRVVIFYT 129 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC-----------------CHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC-----------------CHHHHhhCCCCceeeehh
Confidence 44557888898888888776 2 466899999999887621 145788999888888887
Q ss_pred cCC--ChHHHHHHHHHHHHhc
Q 004225 740 RHD--SNGICEKAVKILEIYW 758 (767)
Q Consensus 740 ~~~--~~~v~~~a~~~l~~~~ 758 (767)
.++ .++.+..|..+++++-
T Consensus 130 k~~~et~~nkrla~~Li~~Ws 150 (170)
T 3nfq_A 130 KSKRVEAQLARLAEKLIAEWT 150 (170)
T ss_dssp HCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCcccHHHHHHHHHHHHHHH
Confidence 774 5789999999999873
No 332
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=31.25 E-value=3e+02 Score=24.96 Aligned_cols=141 Identities=8% Similarity=-0.078 Sum_probs=88.9
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhc
Q 004225 401 ARFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSS-PSDDVREKAVWALGNIARSSPRDRDLVLSE 479 (767)
Q Consensus 401 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 479 (767)
..+..+..++. -+.+..|+..+......... ..++.+-.++.. ++.++....+.+++.+....++.
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~------- 124 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE------- 124 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG-------
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH-------
Confidence 33444566666 78888888887765431111 113333445544 67788777667777776443331
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHH
Q 004225 480 KALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQA 559 (767)
Q Consensus 480 g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 559 (767)
..+.+.... .+++.-+++.|+.+...... .......++.+..++.+++.-|+..+.|+|..++..+++....
T Consensus 125 -~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~------~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 125 -LPTIFALFY-GAENFWNRRVALNLQLMLKE------KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp -HHHHHHHHT-TCSSHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -HHHHHHHHH-cCCCHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 123455566 88999999998875532211 1122344666666778889999999999999999888776555
Q ss_pred HHh
Q 004225 560 VIE 562 (767)
Q Consensus 560 ~~~ 562 (767)
++.
T Consensus 197 fl~ 199 (220)
T 2b6c_A 197 LMK 199 (220)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 333
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=27.23 E-value=3.6e+02 Score=24.64 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=87.4
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHhhhhHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHHhcCCchhHHHHHhc
Q 004225 402 RFVEFLTREDNPQLQLEAARALTNIASENTNVVIDGGAVPIFVKLLSS-PSDDVREKA-VWALGNIARSSPRDRDLVLSE 479 (767)
Q Consensus 402 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a-~~~L~nl~~~~~~~~~~~~~~ 479 (767)
.+-.+..++. .+.+..|+..+...... .....++.+-.++.. ++.++.... ..+++.+....++.
T Consensus 65 ~~~~L~~~~~-~E~r~~ai~~l~~~~k~-----~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~------- 131 (232)
T 3jxy_A 65 IIRELWDLPE-REFQAAALDIMQKYKKH-----INETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPEL------- 131 (232)
T ss_dssp HHHHHHTSSB-HHHHHHHHHHHHHTGGG-----CCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGG-------
T ss_pred HHHHHhcCcH-HHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHHH-------
Confidence 4445556665 77888777776543220 011233444455544 677776654 35666666443431
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCCCHHHHHHHHHHHHhhccCChhHHHH
Q 004225 480 KALIPLLAQLNKHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSNDNDVLRYACEALSCLSDGTNDKIQA 559 (767)
Q Consensus 480 g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 559 (767)
..+.+.... .+++.-+++.|+..+.... .........+.+...+.+++.-|+..+.|+|..++..+++....
T Consensus 132 -~~~~l~~W~-~s~~~w~rR~ai~~~l~~~------~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 -ISAYIPKWI-ASDNIWLQRAAILFQLKYK------QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp -GGGTHHHHH-HSSCHHHHHHHHHTTTTCG------GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -HHHHHHHHh-cCCchHHHHHHHHHHHHHH------hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 234455666 8899999999886653221 11122345566667788999999999999999999888876666
Q ss_pred HHhc
Q 004225 560 VIEA 563 (767)
Q Consensus 560 ~~~~ 563 (767)
+++.
T Consensus 204 fl~~ 207 (232)
T 3jxy_A 204 YVQN 207 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 334
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=27.21 E-value=2.9e+02 Score=24.59 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=63.0
Q ss_pred CHHHHHHHHc-----cCCChHHHHHHHHHHHhhcCCCCCCCccchhchHHHHHHHhcCC---CHHHHHHHHHHHHhhccC
Q 004225 481 ALIPLLAQLN-----KHAKPSMLRNATKTLSRFCQGKPEPPFDQVRPALPALAQLVHSN---DNDVLRYACEALSCLSDG 552 (767)
Q Consensus 481 ~i~~L~~ll~-----~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~ 552 (767)
.+|.+++++. .-.+.......+.....+..+..-.-.......+|.++..+-.. ...+|..|+..+..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 5677776663 23477777888888888888875555556677888888777422 137999999999999854
Q ss_pred ChhHHHHHHhcCcHHHHHHHhcCCCC
Q 004225 553 TNDKIQAVIEADVCPRLVKLLLHPLP 578 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~L~~lL~~~~~ 578 (767)
.......+ ...+...+.+.+.+++.
T Consensus 121 ~~~~y~~L-~~RI~~tl~k~l~dp~~ 145 (196)
T 4atg_A 121 YSRSYKTL-APRVLKTLKGVWMDPNR 145 (196)
T ss_dssp HTTTSTTH-HHHHHHHHHHHHTCTTS
T ss_pred hCccCchH-HHHHHHHHHHHHcCCCC
Confidence 22111111 12356667777766554
No 335
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=25.79 E-value=3.3e+02 Score=27.34 Aligned_cols=79 Identities=14% Similarity=0.043 Sum_probs=50.8
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHhhcCCC
Q 004225 433 VVIDGGAVPIFVKLLSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKHAKPSMLRNATKTLSRFCQGK 512 (767)
Q Consensus 433 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 512 (767)
..++...+..|+.+++++|+.-|...-.+|..+-+.....|..+. ..+-..+.+.+.......-....+..++.+..+-
T Consensus 169 ~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 169 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp TTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred hhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 334556778899999999999999999999888765555555442 2234455666643333333445556666665554
No 336
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=23.73 E-value=63 Score=25.41 Aligned_cols=35 Identities=9% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHHHHhhchHHHHHHHhcC-CChHHHHHHHHHHHHh
Q 004225 723 ARLVEAAEGFKKIEDLKRH-DSNGICEKAVKILEIY 757 (767)
Q Consensus 723 ~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~ 757 (767)
.+.|++.++-..+..+-.| ++++|+..|..++..+
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~W 82 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 82 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 6788899999999999886 9999999999999866
No 337
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.09 E-value=1.7e+02 Score=27.47 Aligned_cols=102 Identities=10% Similarity=0.052 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccC-------CChHHHHHHHHHHHhhcCCC-CCCCccch
Q 004225 449 SPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKH-------AKPSMLRNATKTLSRFCQGK-PEPPFDQV 520 (767)
Q Consensus 449 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~~~~~~~~~~L~~l~~~~-~~~~~~~~ 520 (767)
+.++..+.-++++++|+.....-.++.+........+++.+... .+..++..++..+.|++... .....
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~--- 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD--- 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC---
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch---
Confidence 45778999999999999977553455554432344445444211 25567888888888988653 11111
Q ss_pred hchHHHHHHHhc---------CCCHHHHHHHHHHHHhhccCC
Q 004225 521 RPALPALAQLVH---------SNDNDVLRYACEALSCLSDGT 553 (767)
Q Consensus 521 ~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~ 553 (767)
......+...+. ..|++....++-+++++...+
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 222333444333 237788888888888887543
No 338
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.79 E-value=70 Score=27.32 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=49.3
Q ss_pred CHHHHHHHHhc-CCchhHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HHHhhhcC---CCHHHHHHHHHHHHHHHHh
Q 004225 633 VIGPLVDLLQN-AEFFTKKEAARAISNAISGGTHEQIKYLVRKGCIK-PLCDLLLY---ADPEIVTICLKGLENILKV 705 (767)
Q Consensus 633 ~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~~~i~-~L~~ll~~---~~~~v~~~al~aL~~l~~~ 705 (767)
++..+..-+.. .++.++..|...|-.++..+....-..+....++. .|++++.. ....|+..++..+......
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 34556666664 46777788888888887766666555555555665 36666653 2457999999999988864
No 339
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=22.08 E-value=3.5e+02 Score=22.69 Aligned_cols=77 Identities=9% Similarity=0.120 Sum_probs=54.1
Q ss_pred hhhHHHHhCCChHHHHHhhCC------CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHc-cCCChHHHHHH
Q 004225 429 ENTNVVIDGGAVPIFVKLLSS------PSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLN-KHAKPSMLRNA 501 (767)
Q Consensus 429 ~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~ 501 (767)
.....+++.|++..+-..|.- ++..+|...+.+|.++-- .++.+.+.|.-..++-+-+ ..+.++.++.|
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvv~~l~k~~~et~~nk~la 127 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI----HKEHLVTSGVGKIVYFYSINPKESKEVRASA 127 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHCHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC----CHHHhhcCCCCcchhhhhcCCccCHHHHHHH
Confidence 567788899999999998864 678999999999998842 3556667766555544442 33456677777
Q ss_pred HHHHHhhc
Q 004225 502 TKTLSRFC 509 (767)
Q Consensus 502 ~~~L~~l~ 509 (767)
-..+..-+
T Consensus 128 ~~Li~~Ws 135 (145)
T 2xpp_A 128 KALVQKWT 135 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655433
No 340
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=21.35 E-value=3.4e+02 Score=24.15 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=75.6
Q ss_pred CChHHHHHhhCC------CCHHHHHHHHHHHHHHhcCCchhHH-HHHhcCCHHHHHHHHc--cCCChHHHHHHHHHHHhh
Q 004225 438 GAVPIFVKLLSS------PSDDVREKAVWALGNIARSSPRDRD-LVLSEKALIPLLAQLN--KHAKPSMLRNATKTLSRF 508 (767)
Q Consensus 438 ~~l~~L~~lL~~------~~~~v~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~L~~ll~--~~~~~~~~~~~~~~L~~l 508 (767)
..+|.+++++.+ .|...-...+.....+..+..-..+ .+. ..++.++..+- +-....+|+.|+..++.+
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH--~LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLH--QILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHH--HHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHH--HHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 367777776643 4556556666666666643221111 111 14566666663 122238999999999999
Q ss_pred cCCCCCCCccchhchHHHHHHHhcCC--CHHHHHHHHHHHHhhccCChhHHHHHHhcCcHHHHHHHhc
Q 004225 509 CQGKPEPPFDQVRPALPALAQLVHSN--DNDVLRYACEALSCLSDGTNDKIQAVIEADVCPRLVKLLL 574 (767)
Q Consensus 509 ~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 574 (767)
+..-..........+...+.+.+.++ ......-|+..+..+.. +.++. -++|.+-.+.+
T Consensus 118 ~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~---~~vr~----~llP~l~~~~~ 178 (196)
T 4atg_A 118 YDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK---NVVNT----VIREHAEEYKR 178 (196)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH---HHHHT----HHHHHHHHHHH
T ss_pred HHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH---HHHHH----hhhcCHHHHHH
Confidence 97754444455677788888777654 46677778777777654 33332 24466555543
No 341
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.31 E-value=2.1e+02 Score=29.17 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=65.3
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHHHHccC-------CChHHHHHHHHHHHhhcCCC-CCCCcc
Q 004225 447 LSSPSDDVREKAVWALGNIARSSPRDRDLVLSEKALIPLLAQLNKH-------AKPSMLRNATKTLSRFCQGK-PEPPFD 518 (767)
Q Consensus 447 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~~~~~~~~~~L~~l~~~~-~~~~~~ 518 (767)
+.+..+..+.-++++++|+.....-.+..+........+++.+... .+..++.+++..+.|++... .....
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~- 349 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD- 349 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC-
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch-
Confidence 3346788999999999999976442344443322345556655211 24567888888888988653 11111
Q ss_pred chhchHHHHHHHhc---------CCCHHHHHHHHHHHHhhccCCh
Q 004225 519 QVRPALPALAQLVH---------SNDNDVLRYACEALSCLSDGTN 554 (767)
Q Consensus 519 ~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~ 554 (767)
......+...+. ..|.+....++-++++|....+
T Consensus 350 --~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 350 --LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp --TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred --HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 223344444444 3588999999999999986543
Done!