Query 004227
Match_columns 767
No_of_seqs 361 out of 2741
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 19:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1154 Dxs Deoxyxylulose-5-ph 100.0 1E-143 3E-148 1195.4 59.9 595 140-752 2-599 (627)
2 PLN02225 1-deoxy-D-xylulose-5- 100.0 5E-138 1E-142 1195.3 65.6 596 132-751 68-666 (701)
3 PLN02582 1-deoxy-D-xylulose-5- 100.0 6E-132 1E-136 1154.0 68.3 620 132-751 23-642 (677)
4 PLN02234 1-deoxy-D-xylulose-5- 100.0 1E-132 3E-137 1150.2 61.0 578 132-741 56-633 (641)
5 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 3E-121 6E-126 1066.7 66.3 592 143-752 1-593 (617)
6 PRK12571 1-deoxy-D-xylulose-5- 100.0 6E-120 1E-124 1058.8 66.8 601 137-752 3-604 (641)
7 PRK12315 1-deoxy-D-xylulose-5- 100.0 2E-112 5E-117 986.7 60.3 553 142-751 2-556 (581)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 1E-107 3E-112 949.8 58.6 553 137-751 1-556 (580)
9 KOG0523 Transketolase [Carbohy 100.0 1.5E-95 3E-100 805.8 39.0 576 140-752 2-602 (632)
10 PTZ00089 transketolase; Provis 100.0 7E-91 1.5E-95 817.1 52.7 513 159-751 5-634 (661)
11 PRK12753 transketolase; Review 100.0 2E-90 4.3E-95 812.0 54.0 518 161-751 5-639 (663)
12 PLN02790 transketolase 100.0 3.8E-90 8.3E-95 810.0 54.8 510 167-751 1-630 (654)
13 PRK05899 transketolase; Review 100.0 4.4E-88 9.5E-93 792.7 52.6 522 155-751 3-600 (624)
14 TIGR00232 tktlase_bact transke 100.0 1E-86 2.2E-91 780.9 52.2 514 162-751 2-629 (653)
15 PRK12754 transketolase; Review 100.0 1.1E-85 2.3E-90 767.8 52.2 503 161-722 5-623 (663)
16 TIGR03186 AKGDH_not_PDH alpha- 100.0 8.3E-82 1.8E-86 741.5 54.3 554 132-750 47-833 (889)
17 PRK09405 aceE pyruvate dehydro 100.0 6.3E-80 1.4E-84 725.8 55.9 550 138-751 58-837 (891)
18 PRK13012 2-oxoacid dehydrogena 100.0 2.4E-78 5.2E-83 715.2 54.6 542 138-751 66-842 (896)
19 COG0021 TktA Transketolase [Ca 100.0 1.7E-78 3.7E-83 677.9 49.0 506 157-723 3-623 (663)
20 PF13292 DXP_synthase_N: 1-deo 100.0 9.5E-72 2.1E-76 573.3 14.2 270 143-428 1-270 (270)
21 COG3958 Transketolase, C-termi 100.0 4.2E-63 9.2E-68 510.4 30.0 285 464-756 6-293 (312)
22 TIGR00759 aceE pyruvate dehydr 100.0 2.2E-58 4.7E-63 536.9 44.3 501 138-696 52-766 (885)
23 CHL00144 odpB pyruvate dehydro 100.0 6.2E-55 1.3E-59 474.0 32.4 282 465-752 4-302 (327)
24 PLN02683 pyruvate dehydrogenas 100.0 9.4E-54 2E-58 469.1 33.8 287 464-753 26-330 (356)
25 PRK09212 pyruvate dehydrogenas 100.0 5.3E-53 1.1E-57 459.4 32.1 282 465-751 4-301 (327)
26 PTZ00182 3-methyl-2-oxobutanat 100.0 1.2E-52 2.6E-57 460.3 32.2 288 462-753 32-335 (355)
27 PRK11892 pyruvate dehydrogenas 100.0 3.2E-52 7E-57 469.2 33.5 284 463-750 140-439 (464)
28 COG0022 AcoB Pyruvate/2-oxoglu 100.0 5.1E-48 1.1E-52 401.4 25.4 289 465-759 2-311 (324)
29 PRK05261 putative phosphoketol 100.0 1.9E-45 4.1E-50 429.6 45.5 466 179-709 49-683 (785)
30 COG3959 Transketolase, N-termi 100.0 5.8E-46 1.2E-50 370.4 23.9 222 155-431 5-243 (243)
31 COG2609 AceE Pyruvate dehydrog 100.0 3.9E-44 8.4E-49 399.7 38.9 537 137-694 54-767 (887)
32 cd02007 TPP_DXS Thiamine pyrop 100.0 9.3E-43 2E-47 353.2 21.5 194 179-434 1-195 (195)
33 PRK09404 sucA 2-oxoglutarate d 100.0 4.3E-40 9.2E-45 392.7 45.9 534 154-752 185-906 (924)
34 PF00456 Transketolase_N: Tran 100.0 2.8E-43 6E-48 382.0 15.8 232 161-448 2-261 (332)
35 cd02017 TPP_E1_EcPDC_like Thia 100.0 3E-41 6.4E-46 367.1 24.9 230 161-446 5-334 (386)
36 KOG0524 Pyruvate dehydrogenase 100.0 2.7E-41 5.8E-46 342.5 21.1 291 463-759 33-347 (359)
37 cd02012 TPP_TK Thiamine pyroph 100.0 1.8E-38 3.8E-43 334.9 23.7 227 166-448 2-245 (255)
38 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 7.2E-37 1.6E-41 363.4 39.7 438 251-752 313-912 (929)
39 cd07033 TPP_PYR_DXS_TK_like Py 100.0 6.5E-34 1.4E-38 278.8 19.2 154 470-624 2-156 (156)
40 KOG0525 Branched chain alpha-k 100.0 3.9E-34 8.4E-39 286.3 15.4 264 463-732 39-321 (362)
41 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 2.6E-31 5.7E-36 262.8 16.8 153 469-624 1-167 (167)
42 PF02779 Transket_pyr: Transke 100.0 4.2E-31 9E-36 264.4 12.5 163 464-627 2-175 (178)
43 smart00861 Transket_pyr Transk 100.0 6.1E-28 1.3E-32 238.9 18.9 159 466-625 1-167 (168)
44 COG3957 Phosphoketolase [Carbo 99.9 4.9E-24 1.1E-28 240.6 28.5 469 179-708 60-692 (793)
45 COG1071 AcoA Pyruvate/2-oxoglu 99.9 3.3E-23 7.2E-28 224.3 21.1 227 154-437 23-269 (358)
46 CHL00149 odpA pyruvate dehydro 99.9 1.8E-22 4E-27 221.1 24.1 229 149-437 11-267 (341)
47 PLN02269 Pyruvate dehydrogenas 99.9 3.1E-22 6.7E-27 220.2 22.3 198 178-436 58-266 (362)
48 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 1.1E-21 2.4E-26 211.2 23.5 202 176-435 22-234 (293)
49 PLN02374 pyruvate dehydrogenas 99.9 2.1E-21 4.5E-26 217.6 22.3 200 178-437 114-333 (433)
50 TIGR03182 PDH_E1_alph_y pyruva 99.9 7.2E-21 1.6E-25 206.8 22.5 202 177-436 29-241 (315)
51 PF00676 E1_dh: Dehydrogenase 99.9 1.1E-20 2.4E-25 203.9 17.5 203 177-437 21-233 (300)
52 TIGR03181 PDH_E1_alph_x pyruva 99.8 1.5E-19 3.3E-24 198.4 24.2 194 180-437 53-254 (341)
53 PRK07119 2-ketoisovalerate fer 99.8 6.9E-18 1.5E-22 185.9 24.2 221 501-726 43-319 (352)
54 TIGR03336 IOR_alpha indolepyru 99.8 5.2E-18 1.1E-22 199.3 24.6 235 507-755 46-324 (595)
55 cd02011 TPP_PK Thiamine pyroph 99.8 1.1E-18 2.3E-23 179.4 16.4 167 210-435 2-209 (227)
56 KOG0225 Pyruvate dehydrogenase 99.8 6.6E-19 1.4E-23 184.7 14.4 197 178-436 87-294 (394)
57 PRK08659 2-oxoglutarate ferred 99.8 1.8E-17 4E-22 184.0 24.2 240 506-762 48-369 (376)
58 PF02780 Transketolase_C: Tran 99.8 4.1E-20 8.8E-25 174.2 1.7 108 644-751 1-109 (124)
59 PRK09622 porA pyruvate flavodo 99.8 8.3E-17 1.8E-21 180.6 26.4 217 508-728 58-344 (407)
60 PRK09627 oorA 2-oxoglutarate-a 99.7 2E-16 4.3E-21 175.4 21.2 216 507-726 48-347 (375)
61 PRK08366 vorA 2-ketoisovalerat 99.7 1.1E-15 2.3E-20 170.3 25.9 205 512-719 54-327 (390)
62 TIGR03710 OAFO_sf 2-oxoacid:ac 99.7 9.2E-16 2E-20 178.8 22.6 219 507-726 237-537 (562)
63 PRK08367 porA pyruvate ferredo 99.7 3.1E-15 6.8E-20 166.9 25.1 213 513-728 56-341 (394)
64 cd02016 TPP_E1_OGDC_like Thiam 99.7 4.1E-16 8.9E-21 164.2 15.3 202 179-436 12-253 (265)
65 cd00568 TPP_enzymes Thiamine p 99.6 5.8E-14 1.3E-18 138.0 15.3 164 194-428 5-168 (168)
66 KOG1182 Branched chain alpha-k 99.5 3.4E-14 7.3E-19 148.1 6.6 124 252-430 192-319 (432)
67 PRK12270 kgd alpha-ketoglutara 99.4 7.6E-11 1.6E-15 138.9 29.6 234 507-749 946-1206(1228)
68 cd03371 TPP_PpyrDC Thiamine py 99.4 4.6E-12 1E-16 128.2 17.3 121 251-433 46-167 (188)
69 PF09364 XFP_N: XFP N-terminal 99.4 3E-12 6.5E-17 137.8 16.3 211 179-449 47-306 (379)
70 cd02013 TPP_Xsc_like Thiamine 99.4 4.8E-12 1E-16 128.8 17.0 132 251-433 51-183 (196)
71 cd02004 TPP_BZL_OCoD_HPCL Thia 99.4 1.8E-12 3.9E-17 129.0 11.1 126 251-428 46-171 (172)
72 cd02008 TPP_IOR_alpha Thiamine 99.4 4.3E-12 9.3E-17 127.2 12.9 127 251-428 49-176 (178)
73 cd02015 TPP_AHAS Thiamine pyro 99.3 6.9E-12 1.5E-16 126.5 12.5 128 251-432 48-177 (186)
74 PRK06163 hypothetical protein; 99.3 2.5E-11 5.4E-16 124.1 16.7 167 184-435 11-179 (202)
75 cd03372 TPP_ComE Thiamine pyro 99.3 2.9E-11 6.3E-16 121.4 16.4 118 252-433 41-159 (179)
76 TIGR02176 pyruv_ox_red pyruvat 99.3 1E-10 2.2E-15 146.1 24.1 218 508-728 53-346 (1165)
77 cd02003 TPP_IolD Thiamine pyro 99.3 1.4E-11 3E-16 126.3 13.4 140 250-433 45-188 (205)
78 cd02002 TPP_BFDC Thiamine pyro 99.3 1.4E-11 2.9E-16 123.1 12.4 130 250-428 47-178 (178)
79 COG0674 PorA Pyruvate:ferredox 99.3 1.3E-10 2.9E-15 128.8 21.5 215 505-722 46-328 (365)
80 cd02006 TPP_Gcl Thiamine pyrop 99.3 2.1E-11 4.5E-16 124.7 13.4 141 251-432 55-197 (202)
81 TIGR03297 Ppyr-DeCO2ase phosph 99.3 1.4E-10 3E-15 128.4 20.2 167 186-433 172-340 (361)
82 COG4231 Indolepyruvate ferredo 99.3 5.2E-10 1.1E-14 127.7 23.1 234 507-755 58-341 (640)
83 cd02010 TPP_ALS Thiamine pyrop 99.3 3.9E-11 8.4E-16 120.3 12.4 127 250-430 45-171 (177)
84 PF02775 TPP_enzyme_C: Thiamin 99.3 9.1E-12 2E-16 121.5 7.6 130 249-426 24-153 (153)
85 cd02014 TPP_POX Thiamine pyrop 99.2 4.8E-11 1E-15 119.6 11.9 126 251-430 49-174 (178)
86 cd02001 TPP_ComE_PpyrDC Thiami 99.2 4.5E-11 9.8E-16 117.6 11.3 116 252-431 41-157 (157)
87 cd06586 TPP_enzyme_PYR Pyrimid 99.2 1.5E-10 3.3E-15 112.1 13.6 126 497-624 25-154 (154)
88 TIGR03846 sulfopy_beta sulfopy 99.2 1E-10 2.3E-15 117.7 12.4 118 252-432 41-159 (181)
89 cd02009 TPP_SHCHC_synthase Thi 99.2 4.8E-11 1.1E-15 119.3 8.6 127 250-428 48-174 (175)
90 COG0028 IlvB Thiamine pyrophos 99.2 8.1E-11 1.7E-15 137.1 10.7 129 250-431 405-533 (550)
91 cd02005 TPP_PDC_IPDC Thiamine 99.1 3.5E-10 7.6E-15 114.0 12.0 125 251-431 48-176 (183)
92 PRK11864 2-ketoisovalerate fer 99.1 5.5E-10 1.2E-14 120.0 13.5 148 250-436 66-216 (300)
93 PRK08322 acetolactate synthase 99.1 2.9E-09 6.2E-14 124.6 20.7 131 250-434 403-533 (547)
94 TIGR02418 acolac_catab acetola 99.1 4.6E-10 1E-14 131.0 13.4 129 250-432 405-533 (539)
95 PRK08266 hypothetical protein; 99.1 4E-10 8.6E-15 131.6 12.8 129 251-432 400-528 (542)
96 cd03375 TPP_OGFOR Thiamine pyr 99.1 3.2E-10 6.9E-15 115.3 10.4 133 253-429 51-184 (193)
97 PRK07064 hypothetical protein; 99.1 3.6E-10 7.9E-15 131.9 11.7 130 253-435 405-534 (544)
98 PRK06546 pyruvate dehydrogenas 99.1 5.2E-10 1.1E-14 131.7 12.8 128 251-432 406-533 (578)
99 PRK06965 acetolactate synthase 99.1 5.9E-10 1.3E-14 131.4 12.9 130 250-432 434-565 (587)
100 PRK07524 hypothetical protein; 99.1 6E-10 1.3E-14 129.9 12.7 129 251-433 405-533 (535)
101 cd03376 TPP_PFOR_porB_like Thi 99.1 6.7E-10 1.4E-14 116.3 11.8 139 252-429 61-200 (235)
102 PRK08199 thiamine pyrophosphat 99.1 5.8E-10 1.3E-14 130.7 12.6 128 251-431 413-540 (557)
103 PRK06457 pyruvate dehydrogenas 99.1 4.7E-10 1E-14 131.3 11.8 126 251-430 394-520 (549)
104 PRK09124 pyruvate dehydrogenas 99.1 5.4E-10 1.2E-14 131.5 12.1 128 251-432 406-533 (574)
105 PRK09107 acetolactate synthase 99.1 7E-10 1.5E-14 131.0 13.1 127 251-430 428-555 (595)
106 PRK05858 hypothetical protein; 99.1 8.4E-10 1.8E-14 129.0 13.6 128 251-432 405-533 (542)
107 PRK08611 pyruvate oxidase; Pro 99.1 7.1E-10 1.5E-14 130.5 12.8 128 251-432 406-533 (576)
108 PRK08978 acetolactate synthase 99.1 9.2E-10 2E-14 128.8 12.8 128 251-432 399-528 (548)
109 PRK07979 acetolactate synthase 99.0 1E-09 2.2E-14 129.1 13.0 129 251-430 419-549 (574)
110 PRK06725 acetolactate synthase 99.0 1.1E-09 2.3E-14 128.9 12.9 128 251-431 420-547 (570)
111 PRK06112 acetolactate synthase 99.0 3E-10 6.4E-15 133.7 8.3 129 251-432 435-563 (578)
112 PLN02470 acetolactate synthase 99.0 1E-09 2.2E-14 129.5 12.7 137 251-432 424-560 (585)
113 PRK06456 acetolactate synthase 99.0 1.1E-09 2.4E-14 128.8 12.7 128 251-431 419-547 (572)
114 PRK09259 putative oxalyl-CoA d 99.0 4.5E-09 9.8E-14 123.5 17.8 128 251-433 422-550 (569)
115 PRK07418 acetolactate synthase 99.0 1E-09 2.2E-14 130.2 12.4 129 251-432 432-562 (616)
116 TIGR01504 glyox_carbo_lig glyo 99.0 1E-09 2.2E-14 129.4 12.3 138 251-431 416-557 (588)
117 PRK08979 acetolactate synthase 99.0 1.2E-09 2.5E-14 128.6 12.6 129 251-431 419-548 (572)
118 PRK06466 acetolactate synthase 99.0 1.4E-09 2.9E-14 128.1 12.9 129 251-432 421-551 (574)
119 PRK06882 acetolactate synthase 99.0 1.5E-09 3.2E-14 127.8 13.0 130 251-432 419-549 (574)
120 PRK08527 acetolactate synthase 99.0 1.4E-09 3E-14 127.7 12.6 129 251-432 412-541 (563)
121 PRK06048 acetolactate synthase 99.0 1.5E-09 3.3E-14 127.3 12.8 127 251-431 412-540 (561)
122 CHL00099 ilvB acetohydroxyacid 99.0 1.6E-09 3.4E-14 127.8 12.9 130 250-430 427-556 (585)
123 PRK06154 hypothetical protein; 99.0 7.8E-10 1.7E-14 129.9 10.0 129 251-432 429-558 (565)
124 TIGR03457 sulphoacet_xsc sulfo 99.0 1.8E-09 3.8E-14 127.2 13.0 131 251-433 428-561 (579)
125 PRK07586 hypothetical protein; 99.0 1.7E-09 3.7E-14 125.5 12.7 126 253-427 385-513 (514)
126 PRK12474 hypothetical protein; 99.0 1.5E-09 3.2E-14 126.3 11.9 128 253-428 389-518 (518)
127 PRK07710 acetolactate synthase 99.0 1.9E-09 4E-14 126.8 12.9 128 251-432 422-551 (571)
128 PRK07092 benzoylformate decarb 99.0 1.7E-09 3.7E-14 126.0 12.3 124 252-428 406-529 (530)
129 PRK07789 acetolactate synthase 99.0 1.6E-09 3.5E-14 128.4 12.2 133 250-430 444-577 (612)
130 PRK08617 acetolactate synthase 99.0 1.4E-09 3E-14 127.4 11.5 127 251-432 412-539 (552)
131 TIGR02720 pyruv_oxi_spxB pyruv 99.0 2E-09 4.3E-14 126.7 12.6 129 251-431 406-534 (575)
132 PRK08273 thiamine pyrophosphat 99.0 1.9E-09 4E-14 127.5 12.3 131 251-432 413-549 (597)
133 PRK07282 acetolactate synthase 99.0 1.7E-09 3.7E-14 127.1 11.4 127 251-431 416-543 (566)
134 TIGR03254 oxalate_oxc oxalyl-C 99.0 7.4E-09 1.6E-13 121.4 16.7 126 251-432 415-541 (554)
135 PRK08155 acetolactate synthase 99.0 1.9E-09 4.1E-14 126.6 11.7 128 251-431 417-545 (564)
136 PRK11269 glyoxylate carboligas 99.0 2.1E-09 4.6E-14 126.9 12.0 138 251-431 417-558 (591)
137 TIGR00118 acolac_lg acetolacta 99.0 2.8E-09 6.2E-14 124.9 12.2 128 251-432 410-539 (558)
138 PRK06276 acetolactate synthase 98.9 4.1E-09 8.9E-14 124.3 12.4 127 251-430 417-544 (586)
139 PRK08327 acetolactate synthase 98.9 2.8E-09 6E-14 125.3 10.3 136 251-429 428-567 (569)
140 PRK07525 sulfoacetaldehyde ace 98.9 7.6E-09 1.6E-13 122.1 13.5 131 251-433 433-566 (588)
141 PLN02573 pyruvate decarboxylas 98.9 5.1E-09 1.1E-13 123.3 11.4 123 251-430 426-553 (578)
142 TIGR03393 indolpyr_decarb indo 98.9 4.7E-09 1E-13 122.6 10.7 123 251-430 402-528 (539)
143 PRK13030 2-oxoacid ferredoxin 98.9 1.3E-07 2.7E-12 117.3 21.9 256 466-729 21-355 (1159)
144 cd02018 TPP_PFOR Thiamine pyro 98.9 1E-08 2.3E-13 107.5 10.3 140 251-429 62-203 (237)
145 PRK11869 2-oxoacid ferredoxin 98.8 8.2E-09 1.8E-13 110.4 9.6 134 253-429 60-193 (280)
146 PRK05778 2-oxoglutarate ferred 98.8 1E-08 2.2E-13 110.9 9.6 134 253-429 70-203 (301)
147 PRK11866 2-oxoacid ferredoxin 98.8 1.7E-08 3.6E-13 108.1 10.7 134 252-429 58-192 (279)
148 PRK11865 pyruvate ferredoxin o 98.8 3.8E-08 8.2E-13 106.0 13.4 151 250-436 66-220 (299)
149 PRK07449 2-succinyl-5-enolpyru 98.8 1.5E-08 3.3E-13 119.1 11.3 128 251-430 423-550 (568)
150 TIGR03394 indol_phenyl_DC indo 98.8 2.8E-08 6E-13 116.1 11.7 123 251-431 401-523 (535)
151 PRK09628 oorB 2-oxoglutarate-a 98.8 2.5E-08 5.5E-13 106.7 10.3 134 253-429 68-201 (277)
152 PRK11867 2-oxoglutarate ferred 98.8 3.9E-08 8.5E-13 105.8 11.1 133 253-429 69-202 (286)
153 PRK09193 indolepyruvate ferred 98.7 3.2E-07 6.9E-12 113.5 19.7 254 466-730 29-364 (1165)
154 PF03894 XFP: D-xylulose 5-pho 98.7 3.7E-07 8E-12 90.0 15.0 143 469-612 2-178 (179)
155 PRK13029 2-oxoacid ferredoxin 98.7 1E-06 2.2E-11 109.0 20.7 217 508-730 86-367 (1186)
156 COG3961 Pyruvate decarboxylase 98.7 1.1E-07 2.4E-12 106.7 11.0 205 152-429 319-535 (557)
157 TIGR02177 PorB_KorB 2-oxoacid: 98.6 9E-08 1.9E-12 102.8 9.7 134 253-429 53-186 (287)
158 TIGR03336 IOR_alpha indolepyru 98.6 1E-07 2.2E-12 112.7 10.6 127 252-428 402-529 (595)
159 PF01855 POR_N: Pyruvate flavo 98.5 4.9E-07 1.1E-11 94.5 9.1 115 509-625 38-155 (230)
160 PLN02980 2-oxoglutarate decarb 98.5 5.4E-07 1.2E-11 117.4 11.4 131 251-431 757-891 (1655)
161 KOG1185 Thiamine pyrophosphate 98.3 1.2E-05 2.6E-10 89.7 16.6 205 157-431 355-562 (571)
162 KOG0451 Predicted 2-oxoglutara 98.3 0.00016 3.4E-09 81.6 23.6 247 466-719 565-867 (913)
163 KOG4166 Thiamine pyrophosphate 98.2 1.1E-05 2.4E-10 88.4 11.4 175 195-437 481-655 (675)
164 COG3962 Acetolactate synthase 98.2 1.1E-05 2.4E-10 89.4 11.5 136 246-430 437-576 (617)
165 KOG1184 Thiamine pyrophosphate 98.1 8.5E-06 1.8E-10 91.6 8.3 65 252-322 414-478 (561)
166 KOG0450 2-oxoglutarate dehydro 98.0 0.00073 1.6E-08 78.1 22.9 240 477-719 661-963 (1017)
167 COG0567 SucA 2-oxoglutarate de 98.0 0.00029 6.2E-09 84.6 19.2 206 508-720 628-858 (906)
168 cd07034 TPP_PYR_PFOR_IOR-alpha 97.6 0.0025 5.4E-08 62.5 15.8 114 506-623 41-159 (160)
169 COG4231 Indolepyruvate ferredo 97.5 0.0002 4.4E-09 82.8 8.3 124 255-428 430-553 (640)
170 COG1013 PorB Pyruvate:ferredox 97.5 0.00045 9.7E-09 74.9 10.5 130 257-429 74-204 (294)
171 cd07035 TPP_PYR_POX_like Pyrim 97.1 0.0077 1.7E-07 58.6 13.3 114 507-623 35-154 (155)
172 TIGR03297 Ppyr-DeCO2ase phosph 97.0 0.0062 1.3E-07 68.1 12.8 125 501-627 20-155 (361)
173 KOG0523 Transketolase [Carbohy 97.0 0.0008 1.7E-08 77.4 5.6 59 386-448 200-258 (632)
174 cd03377 TPP_PFOR_PNO Thiamine 96.9 0.0056 1.2E-07 67.8 10.8 114 276-429 152-267 (365)
175 COG3960 Glyoxylate carboligase 96.8 0.0015 3.3E-08 70.1 4.7 133 252-428 418-555 (592)
176 PF02776 TPP_enzyme_N: Thiamin 96.4 0.049 1.1E-06 54.2 12.6 123 500-625 33-162 (172)
177 PRK13030 2-oxoacid ferredoxin 96.2 0.016 3.4E-07 73.1 9.9 60 253-317 468-527 (1159)
178 COG1165 MenD 2-succinyl-6-hydr 96.0 0.1 2.3E-06 60.3 14.2 119 258-432 427-549 (566)
179 PRK09193 indolepyruvate ferred 95.9 0.029 6.3E-07 70.6 10.0 61 252-317 480-540 (1165)
180 TIGR03845 sulfopyru_alph sulfo 95.7 0.35 7.6E-06 47.8 15.0 110 513-625 40-155 (157)
181 PRK13029 2-oxoacid ferredoxin 95.3 0.076 1.7E-06 66.9 10.3 60 253-317 495-554 (1186)
182 PRK07586 hypothetical protein; 94.5 4.3 9.4E-05 47.5 21.9 202 508-712 41-271 (514)
183 cd07039 TPP_PYR_POX Pyrimidine 94.5 1.4 3E-05 43.8 15.1 115 508-625 40-159 (164)
184 PRK07524 hypothetical protein; 94.4 1.4 3E-05 51.8 17.5 115 508-625 41-164 (535)
185 PRK07064 hypothetical protein; 94.3 3.1 6.6E-05 49.1 20.1 115 508-625 43-166 (544)
186 cd07037 TPP_PYR_MenD Pyrimidin 94.0 0.97 2.1E-05 44.9 12.9 113 508-623 37-161 (162)
187 PRK05858 hypothetical protein; 93.9 1.9 4.1E-05 50.9 17.3 117 506-625 42-164 (542)
188 TIGR02176 pyruv_ox_red pyruvat 93.9 0.18 3.8E-06 64.6 9.1 114 276-429 952-1067(1165)
189 TIGR02418 acolac_catab acetola 93.8 1.9 4E-05 50.9 17.0 115 508-625 38-158 (539)
190 cd02004 TPP_BZL_OCoD_HPCL Thia 93.8 0.51 1.1E-05 46.9 10.6 118 501-622 33-169 (172)
191 COG4032 Predicted thiamine-pyr 93.8 0.11 2.3E-06 50.0 5.3 108 514-624 49-163 (172)
192 cd02001 TPP_ComE_PpyrDC Thiami 93.5 0.9 2E-05 44.8 11.6 143 470-622 3-152 (157)
193 PRK08199 thiamine pyrophosphat 93.5 6 0.00013 46.9 20.6 116 507-625 47-168 (557)
194 TIGR03457 sulphoacet_xsc sulfo 93.5 2.5 5.4E-05 50.3 17.4 116 508-626 41-161 (579)
195 PRK08322 acetolactate synthase 93.5 2 4.3E-05 50.7 16.5 113 508-625 40-160 (547)
196 PRK12474 hypothetical protein; 93.4 10 0.00023 44.5 22.1 201 508-712 45-275 (518)
197 PRK07525 sulfoacetaldehyde ace 93.2 0.97 2.1E-05 53.9 13.4 117 507-626 44-165 (588)
198 cd07038 TPP_PYR_PDC_IPDC_like 92.3 3.3 7.1E-05 41.0 13.7 113 508-624 37-162 (162)
199 PRK07092 benzoylformate decarb 92.0 5.7 0.00012 46.7 17.6 116 507-625 49-171 (530)
200 PRK07979 acetolactate synthase 91.9 2.4 5.2E-05 50.4 14.4 116 508-626 44-165 (574)
201 cd02014 TPP_POX Thiamine pyrop 91.9 3.2 7E-05 41.5 13.3 120 500-623 35-171 (178)
202 PRK06466 acetolactate synthase 91.1 3.4 7.3E-05 49.2 14.4 116 507-625 43-164 (574)
203 cd02009 TPP_SHCHC_synthase Thi 91.1 3 6.6E-05 41.6 12.0 114 504-622 39-172 (175)
204 PRK07282 acetolactate synthase 91.1 3.3 7.1E-05 49.2 14.3 116 507-625 49-170 (566)
205 PRK08155 acetolactate synthase 90.8 3.5 7.7E-05 48.9 14.3 116 507-625 52-173 (564)
206 cd02015 TPP_AHAS Thiamine pyro 90.7 2.6 5.6E-05 42.4 11.2 118 502-623 36-172 (186)
207 PRK06965 acetolactate synthase 90.6 3.9 8.4E-05 48.8 14.4 116 507-625 60-181 (587)
208 TIGR00118 acolac_lg acetolacta 90.5 4.7 0.0001 47.7 15.0 115 508-625 41-161 (558)
209 COG0028 IlvB Thiamine pyrophos 90.2 6.3 0.00014 46.8 15.5 148 472-625 5-161 (550)
210 TIGR02720 pyruv_oxi_spxB pyruv 90.1 5.8 0.00012 47.3 15.2 116 507-625 39-159 (575)
211 PRK08527 acetolactate synthase 90.0 6.3 0.00014 46.8 15.4 115 508-625 43-163 (563)
212 PRK06457 pyruvate dehydrogenas 90.0 4.7 0.0001 47.7 14.2 116 507-625 40-160 (549)
213 cd02010 TPP_ALS Thiamine pyrop 89.9 5.6 0.00012 39.9 12.8 119 502-623 34-168 (177)
214 PRK07710 acetolactate synthase 89.8 5.3 0.00011 47.5 14.6 117 506-625 53-175 (571)
215 cd03376 TPP_PFOR_porB_like Thi 89.7 7.2 0.00016 41.1 14.0 90 531-622 80-197 (235)
216 PRK08611 pyruvate oxidase; Pro 89.7 6.4 0.00014 46.9 15.2 116 507-625 44-164 (576)
217 TIGR01504 glyox_carbo_lig glyo 89.6 8.7 0.00019 45.9 16.2 116 508-626 43-165 (588)
218 TIGR02177 PorB_KorB 2-oxoacid: 89.3 6.9 0.00015 42.6 13.7 143 468-622 13-183 (287)
219 PRK09107 acetolactate synthase 89.3 8.3 0.00018 46.2 15.8 148 472-626 14-172 (595)
220 TIGR03394 indol_phenyl_DC indo 89.1 9.5 0.00021 45.1 15.9 116 508-626 40-166 (535)
221 PRK11269 glyoxylate carboligas 89.0 6.6 0.00014 46.9 14.6 116 507-625 43-165 (591)
222 PRK06725 acetolactate synthase 88.9 5.7 0.00012 47.3 14.0 116 507-625 53-174 (570)
223 PF09363 XFP_C: XFP C-terminal 88.8 1.5 3.3E-05 44.9 7.7 72 653-728 35-119 (203)
224 PRK06276 acetolactate synthase 88.8 7.8 0.00017 46.2 15.1 115 508-625 40-160 (586)
225 PRK11866 2-oxoacid ferredoxin 88.8 7 0.00015 42.4 13.2 149 466-622 17-189 (279)
226 TIGR03846 sulfopy_beta sulfopy 88.5 6.8 0.00015 39.5 12.3 144 469-623 2-154 (181)
227 PRK08266 hypothetical protein; 88.5 7.8 0.00017 45.7 14.7 116 507-625 44-168 (542)
228 PLN02573 pyruvate decarboxylas 88.4 7.1 0.00015 46.6 14.3 115 508-626 56-183 (578)
229 cd02018 TPP_PFOR Thiamine pyro 88.4 17 0.00038 38.3 15.8 117 505-622 51-200 (237)
230 PRK06882 acetolactate synthase 88.3 8.3 0.00018 45.8 14.8 115 508-625 44-164 (574)
231 PRK06546 pyruvate dehydrogenas 88.1 7.8 0.00017 46.2 14.4 116 507-625 42-162 (578)
232 PRK06163 hypothetical protein; 88.0 20 0.00043 37.0 15.5 116 504-623 48-171 (202)
233 PRK07789 acetolactate synthase 88.0 9.2 0.0002 45.9 15.0 116 507-625 70-191 (612)
234 PRK08978 acetolactate synthase 88.0 8.6 0.00019 45.4 14.6 115 508-625 40-160 (548)
235 PRK09124 pyruvate dehydrogenas 87.9 9.9 0.00022 45.2 15.1 115 508-625 43-162 (574)
236 PRK08617 acetolactate synthase 87.9 3.5 7.7E-05 48.7 11.3 116 507-625 43-164 (552)
237 PRK06456 acetolactate synthase 87.2 4.5 9.7E-05 48.0 11.7 113 508-625 45-165 (572)
238 PRK06112 acetolactate synthase 87.0 5.2 0.00011 47.6 12.1 116 507-625 50-171 (578)
239 PRK08979 acetolactate synthase 86.9 11 0.00023 44.9 14.7 116 507-625 43-164 (572)
240 PLN02470 acetolactate synthase 86.7 11 0.00024 44.9 14.7 116 507-625 52-173 (585)
241 cd03372 TPP_ComE Thiamine pyro 86.6 8.3 0.00018 38.8 11.6 142 469-623 2-153 (179)
242 PRK11864 2-ketoisovalerate fer 86.6 9.8 0.00021 41.7 12.9 103 518-622 73-204 (300)
243 PRK07449 2-succinyl-5-enolpyru 86.5 7.3 0.00016 46.2 12.9 116 508-625 49-174 (568)
244 cd02003 TPP_IolD Thiamine pyro 86.5 2.9 6.3E-05 42.9 8.4 117 501-622 33-181 (205)
245 PRK06048 acetolactate synthase 85.5 14 0.00031 43.8 14.7 114 507-625 46-167 (561)
246 cd02013 TPP_Xsc_like Thiamine 85.5 3.6 7.9E-05 41.9 8.5 120 501-623 38-177 (196)
247 PRK07418 acetolactate synthase 85.2 7.2 0.00016 46.9 12.1 116 507-625 61-182 (616)
248 PRK08273 thiamine pyrophosphat 84.9 13 0.00029 44.4 14.1 146 472-626 6-165 (597)
249 PRK09628 oorB 2-oxoglutarate-a 84.6 16 0.00034 39.7 13.1 104 518-623 72-199 (277)
250 cd06586 TPP_enzyme_PYR Pyrimid 84.1 6.2 0.00013 37.8 9.0 49 258-314 47-96 (154)
251 cd02006 TPP_Gcl Thiamine pyrop 84.0 3.7 7.9E-05 42.0 7.8 120 500-622 41-191 (202)
252 cd02007 TPP_DXS Thiamine pyrop 83.6 8.5 0.00018 39.3 10.2 99 518-623 79-188 (195)
253 PRK11867 2-oxoglutarate ferred 83.5 19 0.00042 39.2 13.4 146 466-622 27-199 (286)
254 TIGR03254 oxalate_oxc oxalyl-C 83.2 23 0.0005 41.9 15.1 115 508-625 42-164 (554)
255 cd03375 TPP_OGFOR Thiamine pyr 83.1 31 0.00067 35.1 14.0 99 520-622 57-181 (193)
256 CHL00099 ilvB acetohydroxyacid 82.6 10 0.00023 45.2 11.9 113 508-625 53-173 (585)
257 TIGR00173 menD 2-succinyl-5-en 82.5 16 0.00034 42.0 12.9 115 508-626 40-167 (432)
258 cd02012 TPP_TK Thiamine pyroph 82.2 15 0.00032 39.1 11.7 103 518-623 109-225 (255)
259 cd01460 vWA_midasin VWA_Midasi 81.9 16 0.00036 39.3 11.9 62 253-314 135-205 (266)
260 PRK09259 putative oxalyl-CoA d 81.4 27 0.00058 41.6 14.8 116 507-625 48-171 (569)
261 cd03371 TPP_PpyrDC Thiamine py 81.2 38 0.00082 34.4 13.8 113 505-623 40-161 (188)
262 PRK08327 acetolactate synthase 80.5 31 0.00068 41.0 14.9 115 508-625 52-181 (569)
263 PRK11865 pyruvate ferredoxin o 80.0 46 0.00099 36.6 14.7 103 518-622 73-208 (299)
264 cd02002 TPP_BFDC Thiamine pyro 78.1 12 0.00025 37.2 8.9 115 504-622 38-176 (178)
265 cd00568 TPP_enzymes Thiamine p 77.7 10 0.00022 36.8 8.2 100 519-622 51-166 (168)
266 cd03027 GRX_DEP Glutaredoxin ( 76.9 6.5 0.00014 33.1 5.7 66 654-721 2-68 (73)
267 cd03028 GRX_PICOT_like Glutare 76.3 6.8 0.00015 34.7 5.9 68 652-723 7-82 (90)
268 PRK12315 1-deoxy-D-xylulose-5- 76.1 24 0.00052 42.3 12.1 109 510-623 110-241 (581)
269 PRK11869 2-oxoacid ferredoxin 74.6 36 0.00078 37.0 11.9 149 466-622 18-190 (280)
270 COG1071 AcoA Pyruvate/2-oxoglu 74.6 18 0.00039 40.6 9.8 101 518-622 144-258 (358)
271 PRK05778 2-oxoglutarate ferred 74.0 46 0.001 36.6 12.7 102 519-622 75-200 (301)
272 PF02775 TPP_enzyme_C: Thiamin 73.7 7.6 0.00017 37.6 6.0 115 504-621 16-152 (153)
273 KOG1185 Thiamine pyrophosphate 73.0 16 0.00035 42.2 8.9 151 465-621 380-556 (571)
274 cd02005 TPP_PDC_IPDC Thiamine 72.9 36 0.00077 34.3 10.8 118 504-623 38-172 (183)
275 cd02008 TPP_IOR_alpha Thiamine 72.8 45 0.00098 33.3 11.5 99 521-622 58-174 (178)
276 TIGR00365 monothiol glutaredox 72.4 10 0.00023 34.2 6.1 71 652-723 11-86 (97)
277 PRK06154 hypothetical protein; 72.1 28 0.0006 41.5 11.4 122 500-623 415-553 (565)
278 PLN02980 2-oxoglutarate decarb 70.8 41 0.0009 45.3 13.5 113 508-624 341-466 (1655)
279 TIGR02190 GlrX-dom Glutaredoxi 67.2 19 0.00041 30.9 6.4 72 651-726 6-78 (79)
280 TIGR03393 indolpyr_decarb indo 66.0 78 0.0017 37.4 13.4 145 471-623 361-525 (539)
281 PRK05444 1-deoxy-D-xylulose-5- 66.0 34 0.00075 40.9 10.4 101 519-623 122-240 (580)
282 cd03418 GRX_GRXb_1_3_like Glut 64.6 16 0.00036 30.4 5.5 66 655-722 2-69 (75)
283 cd07035 TPP_PYR_POX_like Pyrim 64.4 54 0.0012 31.6 9.8 51 257-314 45-96 (155)
284 cd07036 TPP_PYR_E1-PDHc-beta_l 63.5 70 0.0015 31.9 10.5 35 387-426 130-165 (167)
285 PLN02790 transketolase 63.4 49 0.0011 40.3 11.1 77 544-623 153-236 (654)
286 cd00860 ThrRS_anticodon ThrRS 62.8 37 0.0008 29.2 7.6 58 654-713 3-61 (91)
287 cd03033 ArsC_15kD Arsenate Red 60.7 17 0.00037 33.9 5.2 49 654-704 1-49 (113)
288 PRK12571 1-deoxy-D-xylulose-5- 60.5 66 0.0014 39.1 11.5 49 259-315 374-423 (641)
289 TIGR02189 GlrX-like_plant Glut 59.9 40 0.00086 30.5 7.4 67 653-721 8-78 (99)
290 cd03029 GRX_hybridPRX5 Glutare 59.9 40 0.00086 28.1 7.0 69 654-726 2-71 (72)
291 cd07033 TPP_PYR_DXS_TK_like Py 59.8 99 0.0021 30.2 10.8 48 259-314 52-100 (156)
292 TIGR03181 PDH_E1_alph_x pyruva 59.1 38 0.00081 37.8 8.5 101 518-622 130-243 (341)
293 TIGR00204 dxs 1-deoxy-D-xylulo 58.9 67 0.0015 38.8 11.2 49 259-315 365-414 (617)
294 cd07034 TPP_PYR_PFOR_IOR-alpha 58.9 76 0.0017 30.7 9.8 49 258-314 53-101 (160)
295 COG2241 CobL Precorrin-6B meth 57.6 90 0.0019 32.6 10.3 99 653-759 95-194 (210)
296 PRK10638 glutaredoxin 3; Provi 57.5 26 0.00056 30.2 5.6 65 654-720 3-68 (83)
297 TIGR03845 sulfopyru_alph sulfo 56.6 1.2E+02 0.0026 29.9 10.7 51 256-314 44-95 (157)
298 PF00676 E1_dh: Dehydrogenase 56.5 40 0.00087 36.9 8.1 101 520-622 107-222 (300)
299 cd02000 TPP_E1_PDC_ADC_BCADC T 55.9 45 0.00098 36.2 8.3 88 532-622 127-225 (293)
300 PTZ00089 transketolase; Provis 55.2 82 0.0018 38.4 11.2 77 544-623 164-247 (661)
301 PF04273 DUF442: Putative phos 54.7 22 0.00048 33.1 4.9 41 387-428 53-95 (110)
302 PRK05899 transketolase; Review 52.7 1.3E+02 0.0028 36.4 12.3 88 532-623 151-246 (624)
303 cd01481 vWA_collagen_alpha3-VI 50.7 41 0.00088 33.2 6.4 55 655-712 110-164 (165)
304 PLN02582 1-deoxy-D-xylulose-5- 49.9 1.2E+02 0.0026 37.1 11.3 50 258-315 410-460 (677)
305 cd00858 GlyRS_anticodon GlyRS 49.7 65 0.0014 30.0 7.3 58 653-713 27-87 (121)
306 PRK11200 grxA glutaredoxin 1; 48.9 97 0.0021 26.7 7.8 71 655-728 3-81 (85)
307 PRK12754 transketolase; Review 48.8 1.2E+02 0.0025 37.2 10.9 78 544-624 162-245 (663)
308 PLN02234 1-deoxy-D-xylulose-5- 47.8 1.1E+02 0.0025 37.1 10.6 49 259-315 412-461 (641)
309 PF02779 Transket_pyr: Transke 46.8 2.4E+02 0.0051 28.1 11.3 38 387-427 133-171 (178)
310 PRK12753 transketolase; Review 46.5 1.5E+02 0.0032 36.2 11.5 78 544-624 162-245 (663)
311 TIGR02181 GRX_bact Glutaredoxi 46.0 40 0.00087 28.5 4.9 60 662-722 7-67 (79)
312 KOG1145 Mitochondrial translat 45.5 2.5E+02 0.0054 33.6 12.2 38 274-312 225-262 (683)
313 cd00859 HisRS_anticodon HisRS 44.6 85 0.0018 26.4 6.8 56 654-712 3-60 (91)
314 PF03129 HGTP_anticodon: Antic 44.2 68 0.0015 28.0 6.2 57 654-712 1-61 (94)
315 cd01080 NAD_bind_m-THF_DH_Cycl 43.7 59 0.0013 32.5 6.3 53 651-711 43-95 (168)
316 COG3961 Pyruvate decarboxylase 43.2 98 0.0021 36.4 8.6 136 483-625 20-170 (557)
317 COG0075 Serine-pyruvate aminot 43.0 1.8E+02 0.0039 33.2 10.6 82 647-731 75-162 (383)
318 PRK10853 putative reductase; P 42.9 40 0.00087 31.7 4.7 41 663-704 9-49 (118)
319 COG3962 Acetolactate synthase 41.5 2E+02 0.0043 33.6 10.5 211 464-681 6-260 (617)
320 cd07037 TPP_PYR_MenD Pyrimidin 41.4 1.5E+02 0.0033 29.3 8.8 49 258-312 47-95 (162)
321 PRK10026 arsenate reductase; P 41.3 57 0.0012 31.8 5.6 49 655-705 4-52 (141)
322 CHL00149 odpA pyruvate dehydro 40.2 1.1E+02 0.0024 34.1 8.5 90 531-622 157-256 (341)
323 TIGR00232 tktlase_bact transke 39.8 2.2E+02 0.0048 34.7 11.5 49 259-314 409-457 (653)
324 cd00738 HGTP_anticodon HGTP an 39.6 1.1E+02 0.0023 26.4 6.7 57 654-712 3-63 (94)
325 cd07039 TPP_PYR_POX Pyrimidine 39.4 1.9E+02 0.0042 28.5 9.2 49 259-313 51-99 (164)
326 KOG0225 Pyruvate dehydrogenase 39.1 1.5E+02 0.0032 33.1 8.7 85 534-622 190-284 (394)
327 cd00861 ProRS_anticodon_short 38.5 1.4E+02 0.0029 25.9 7.2 58 654-713 3-64 (94)
328 PF00456 Transketolase_N: Tran 38.4 1.7E+02 0.0036 32.7 9.4 79 544-625 159-243 (332)
329 PRK10329 glutaredoxin-like pro 38.1 62 0.0013 28.1 4.8 62 655-721 3-67 (81)
330 cd02017 TPP_E1_EcPDC_like Thia 37.4 3.6E+02 0.0079 30.8 11.8 51 544-597 163-218 (386)
331 cd03035 ArsC_Yffb Arsenate Red 37.1 49 0.0011 30.4 4.2 43 662-705 7-49 (105)
332 PF03358 FMN_red: NADPH-depend 36.4 71 0.0015 30.5 5.5 65 662-726 15-93 (152)
333 cd03034 ArsC_ArsC Arsenate Red 35.8 66 0.0014 29.8 4.9 42 662-704 7-48 (112)
334 COG1165 MenD 2-succinyl-6-hydr 35.1 8.6E+02 0.019 29.1 17.8 151 466-623 9-173 (566)
335 TIGR02194 GlrX_NrdH Glutaredox 34.7 75 0.0016 26.5 4.7 58 662-720 7-65 (72)
336 PF03960 ArsC: ArsC family; I 34.6 64 0.0014 29.6 4.6 40 663-703 5-44 (110)
337 COG0543 UbiB 2-polyprenylpheno 34.3 1.6E+02 0.0035 31.2 8.3 73 643-716 97-174 (252)
338 PRK10824 glutaredoxin-4; Provi 34.0 99 0.0022 29.1 5.8 71 652-723 14-89 (115)
339 COG3958 Transketolase, C-termi 33.7 2.6E+02 0.0056 30.8 9.4 65 238-315 46-112 (312)
340 PLN02269 Pyruvate dehydrogenas 33.5 2.1E+02 0.0044 32.4 9.2 75 546-623 178-257 (362)
341 PRK05990 precorrin-2 C(20)-met 32.8 2.2E+02 0.0048 30.0 8.9 54 695-751 165-218 (241)
342 TIGR00014 arsC arsenate reduct 32.4 65 0.0014 29.9 4.3 43 662-705 7-49 (114)
343 TIGR01465 cobM_cbiF precorrin- 32.4 2.3E+02 0.005 29.1 8.9 54 694-750 145-200 (229)
344 COG1576 Uncharacterized conser 32.4 2.3E+02 0.0049 28.2 8.1 111 654-764 2-136 (155)
345 KOG3995 3-hydroxyanthranilate 32.4 26 0.00057 36.1 1.7 27 11-39 87-113 (279)
346 COG0695 GrxC Glutaredoxin and 31.5 1.1E+02 0.0023 26.6 5.2 62 655-717 3-66 (80)
347 PRK15473 cbiF cobalt-precorrin 30.6 3.6E+02 0.0077 28.6 10.1 54 694-750 154-209 (257)
348 PLN02225 1-deoxy-D-xylulose-5- 30.5 4.2E+02 0.0091 32.7 11.7 50 258-315 435-485 (701)
349 COG2089 SpsE Sialic acid synth 30.4 1.3E+02 0.0028 33.5 6.6 69 650-719 145-220 (347)
350 cd03032 ArsC_Spx Arsenate Redu 30.3 1E+02 0.0022 28.5 5.2 41 662-703 8-48 (115)
351 PF00590 TP_methylase: Tetrapy 29.8 1E+02 0.0022 31.0 5.7 55 692-749 146-202 (210)
352 COG1393 ArsC Arsenate reductas 29.5 1.2E+02 0.0025 28.7 5.5 49 655-705 3-51 (117)
353 PF02776 TPP_enzyme_N: Thiamin 29.4 5.3E+02 0.011 25.3 10.5 49 258-314 51-101 (172)
354 cd02977 ArsC_family Arsenate R 29.0 84 0.0018 28.4 4.4 41 662-703 7-47 (105)
355 TIGR01616 nitro_assoc nitrogen 28.9 99 0.0021 29.5 4.9 41 662-703 9-49 (126)
356 KOG2862 Alanine-glyoxylate ami 28.9 5.7E+02 0.012 28.6 11.1 133 574-722 24-161 (385)
357 cd06068 H2MP_like-1 Putative [ 28.7 1.8E+02 0.0038 28.1 6.8 54 657-713 2-61 (144)
358 PRK13344 spxA transcriptional 28.7 1.1E+02 0.0024 29.3 5.3 42 662-704 8-49 (132)
359 PRK05948 precorrin-2 methyltra 28.5 4.6E+02 0.0099 27.7 10.4 53 695-750 162-214 (238)
360 TIGR01467 cobI_cbiL precorrin- 28.0 3.5E+02 0.0075 28.0 9.3 92 652-751 118-211 (230)
361 PF00289 CPSase_L_chain: Carba 27.8 1.7E+02 0.0036 27.2 6.1 75 653-731 3-100 (110)
362 cd06063 H2MP_Cyano-H2up This g 27.5 2E+02 0.0044 27.7 7.0 55 655-713 1-61 (146)
363 cd02066 GRX_family Glutaredoxi 27.4 1.8E+02 0.004 22.9 5.8 64 655-720 2-66 (72)
364 KOG1184 Thiamine pyrophosphate 27.1 2.1E+02 0.0046 33.7 7.9 136 484-625 21-170 (561)
365 PF11823 DUF3343: Protein of u 26.9 87 0.0019 26.6 3.8 26 662-687 9-34 (73)
366 TIGR03182 PDH_E1_alph_y pyruva 25.8 3.2E+02 0.007 30.0 9.0 88 532-622 133-231 (315)
367 PRK12559 transcriptional regul 25.6 1.4E+02 0.0031 28.5 5.5 41 662-703 8-48 (131)
368 PF01565 FAD_binding_4: FAD bi 25.5 2.9E+02 0.0064 25.8 7.6 76 593-671 3-81 (139)
369 PRK05576 cobalt-precorrin-2 C( 25.2 3.8E+02 0.0081 27.8 9.0 88 652-750 118-207 (229)
370 PRK03767 NAD(P)H:quinone oxido 25.0 3.1E+02 0.0067 27.8 8.1 67 661-729 13-95 (200)
371 COG0680 HyaD Ni,Fe-hydrogenase 25.0 1.7E+02 0.0036 29.2 5.9 56 653-712 2-64 (160)
372 cd03036 ArsC_like Arsenate Red 24.8 99 0.0021 28.5 4.1 41 662-703 7-47 (111)
373 cd07038 TPP_PYR_PDC_IPDC_like 24.5 5.2E+02 0.011 25.3 9.4 50 256-314 45-96 (162)
374 PF04430 DUF498: Protein of un 24.4 56 0.0012 30.1 2.3 37 651-687 52-89 (110)
375 PRK11544 hycI hydrogenase 3 ma 24.4 3E+02 0.0064 27.1 7.6 55 655-712 3-63 (156)
376 cd05212 NAD_bind_m-THF_DH_Cycl 24.0 1.6E+02 0.0034 28.6 5.4 53 651-711 27-79 (140)
377 PF03853 YjeF_N: YjeF-related 23.8 2E+02 0.0043 28.6 6.3 95 655-754 29-150 (169)
378 PTZ00062 glutaredoxin; Provisi 23.4 2.3E+02 0.0049 29.4 6.8 74 653-732 113-194 (204)
379 COG0426 FpaA Uncharacterized f 23.4 1.5E+02 0.0032 33.8 5.8 31 659-689 256-286 (388)
380 PF10740 DUF2529: Protein of u 23.4 1.5E+02 0.0033 29.9 5.2 121 600-725 24-158 (172)
381 PHA03050 glutaredoxin; Provisi 23.3 2.9E+02 0.0063 25.4 6.9 70 652-723 12-88 (108)
382 PLN02374 pyruvate dehydrogenas 23.0 4.4E+02 0.0094 30.6 9.6 89 532-622 224-322 (433)
383 PRK12759 bifunctional gluaredo 23.0 1.3E+02 0.0029 34.4 5.5 67 654-723 3-79 (410)
384 TIGR00130 frhD coenzyme F420-r 22.0 2.8E+02 0.0061 27.0 6.8 58 653-713 3-70 (153)
385 PLN02683 pyruvate dehydrogenas 22.0 9.7E+02 0.021 26.9 11.9 35 387-426 160-195 (356)
386 PRK10264 hydrogenase 1 maturat 21.8 2.9E+02 0.0062 28.4 7.1 56 653-712 4-66 (195)
387 PRK07119 2-ketoisovalerate fer 21.6 1.3E+02 0.0028 33.7 5.0 47 258-312 60-106 (352)
388 cd06062 H2MP_MemB-H2up Endopep 21.6 3.1E+02 0.0066 26.5 7.0 54 655-712 1-61 (146)
389 PF00258 Flavodoxin_1: Flavodo 21.6 1.8E+02 0.004 27.3 5.4 30 661-690 8-37 (143)
390 TIGR03569 NeuB_NnaB N-acetylne 21.3 2.1E+02 0.0045 31.9 6.4 71 652-724 133-212 (329)
391 PRK08306 dipicolinate synthase 21.1 2.3E+02 0.0049 30.9 6.6 55 652-709 152-216 (296)
392 TIGR02853 spore_dpaA dipicolin 21.0 2.3E+02 0.005 30.8 6.6 55 652-709 151-215 (287)
393 TIGR02183 GRXA Glutaredoxin, G 20.7 3.2E+02 0.007 23.7 6.3 65 662-728 8-80 (86)
394 cd05569 PTS_IIB_fructose PTS_I 20.1 4E+02 0.0087 23.9 6.9 55 655-713 2-63 (96)
395 PRK10466 hybD hydrogenase 2 ma 20.1 3.9E+02 0.0085 26.4 7.5 57 654-714 2-65 (164)
No 1
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=1.3e-143 Score=1195.38 Aligned_cols=595 Identities=56% Similarity=0.929 Sum_probs=569.8
Q ss_pred CccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHH
Q 004227 140 TPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKI 219 (767)
Q Consensus 140 ~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~ 219 (767)
+|+|++|++|.|||+|+.+||++||.|||..+++.|+++|||+|++||+|||++|||++|+.|.|+||||+|||+|+||+
T Consensus 2 ~~~L~~i~~P~dLk~ls~~eL~~La~EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 2 YPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred cchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHH
Q 004227 220 LTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNA 299 (767)
Q Consensus 220 l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A 299 (767)
||||++.|.|+||.+||+|||+|.||+||.|++||+|++||+|+|||.|++++|++++|||+||||+++.||+|||||+|
T Consensus 82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~a 161 (627)
T COG1154 82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA 161 (627)
T ss_pred hcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc
Q 004227 300 G-FLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL 378 (767)
Q Consensus 300 ~-~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~ 378 (767)
+ ..+.|+|+|+|||++ | +++++|+++++|+++++++.|+.+|+..|.+++..|..+.+.+.+.++.+|++
T Consensus 162 g~~~~~~~iVILNDNeM-S--------Is~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l 232 (627)
T COG1154 162 GADLKSNLIVILNDNEM-S--------ISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGL 232 (627)
T ss_pred hhccCCCEEEEEeCCCc-c--------cCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcc
Confidence 9 456999999999997 3 46899999999999999999999999999999888888999999999999998
Q ss_pred cCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccccccC-ccccc
Q 004227 379 ISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDP-KTGKQ 457 (767)
Q Consensus 379 ~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd~-~~g~~ 457 (767)
+.+. ++||++||+|++|+||||+++|..+|+++|+ -++|+++||.|+|||||++||+++.+||++.+||+ ++|..
T Consensus 233 ~~~~--~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd--~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~ 308 (627)
T COG1154 233 LVPG--TLFEELGFNYIGPIDGHNLEELIPTLKNAKD--LKGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQS 308 (627)
T ss_pred cCch--hhHHHhCCeeECCcCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCChhhcChhhccCCCCCCccccCcc
Confidence 8764 8999999999999999999999999999998 57999999999999999999999999999999996 88887
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEee
Q 004227 458 FKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (767)
Q Consensus 458 ~~~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t 537 (767)
.+++.+.++|+++|+++|.+++++|++||.++|+|.+++||..|.++||+||||+||||||+|++|+|||++|+|||+++
T Consensus 309 ~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI 388 (627)
T COG1154 309 KKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI 388 (627)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 66667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCC
Q 004227 538 YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP 617 (767)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P 617 (767)
||+|+||||||++||+|+|++||+|++||+|++|+||+|||+.+|++|||+||||+|++|+|++|+..|+.+|+..+++|
T Consensus 389 YSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP 468 (627)
T COG1154 389 YSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGP 468 (627)
T ss_pred ecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEecCCCCcccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHH
Q 004227 618 SCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLI 697 (767)
Q Consensus 618 ~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i 697 (767)
+.||+||++......+. ...++++||+.++++|.|++||++|.++..|++|++.|.+.||+++|||+||+||+|++++
T Consensus 469 ~AiRyPrg~~~~~~~~~--~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll 546 (627)
T COG1154 469 VAIRYPRGNGVGVILTP--ELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALL 546 (627)
T ss_pred eEEEecCCCCCCCCccc--ccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHH
Confidence 99999999865543322 2467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 698 RQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 698 ~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
+++++.++.+||+||+. .||+|+.|+++|++.++. +|++++|+||+|+++..
T Consensus 547 ~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~---~~v~~lglpd~fi~hg~ 599 (627)
T COG1154 547 LELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGIL---VPVLNLGLPDEFIDHGS 599 (627)
T ss_pred HHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCC---CceEEecCChHhhccCC
Confidence 99999999999999998 799999999999999874 78999999999999864
No 2
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5e-138 Score=1195.33 Aligned_cols=596 Identities=54% Similarity=0.916 Sum_probs=554.9
Q ss_pred ccCCCCCCCccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHh-hccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCC
Q 004227 132 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSV-SKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDV 210 (767)
Q Consensus 132 ~~~~~~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v-~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~ 210 (767)
+|++++|++|+||+||+|.|||+|+.+||++||+|||..+++.+ +++|||+|++||+|||++|||++||.|+|+||||+
T Consensus 68 ~~~~~~~~~~~L~~i~~P~dlk~L~~~eL~~La~EiR~~li~~v~s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDv 147 (701)
T PLN02225 68 EYCDEKFETPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDA 147 (701)
T ss_pred cccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccCCCcCCCccHHHHHHHHHHHhCCCCCceeecc
Confidence 88889989999999999999999999999999999999999999 79999999999999999999999999999999999
Q ss_pred CChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCc
Q 004227 211 GHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAG 290 (767)
Q Consensus 211 GH~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG 290 (767)
|||+|+||+||||++.|++ ||.||++|||+|.||+||.|++||+|++||+|+|||.|++++|++++||+|||||+|+.|
T Consensus 148 gHQ~Y~HKiLTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgG 226 (701)
T PLN02225 148 VEQTYAHKVLTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAG 226 (701)
T ss_pred ccccchhhHhcCChhhcCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhh
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHH
Q 004227 291 QAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (767)
Q Consensus 291 ~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k 370 (767)
|+|||||+|+..+.|+|||+|||+| |+......|...+||+++++|+++++++.|+.+|+.+|.+++++|.....++.|
T Consensus 227 ma~EaLN~~g~~~~~livILNDN~m-Si~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 305 (701)
T PLN02225 227 QAYEAMSNAGYLDSNMIVILNDSRH-SLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAK 305 (701)
T ss_pred hHHHHHhhhhccCCCEEEEEeCCCC-CCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999997 432221245566799999999999999999999999999999998878888899
Q ss_pred HHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccccc
Q 004227 371 VDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKF 450 (767)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~f 450 (767)
+++++|+++.+.+.++||++|++|+||+||||+++|.++|+++|+.+.++|++||+.|+||+
T Consensus 306 ~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGk------------------ 367 (701)
T PLN02225 306 VDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENR------------------ 367 (701)
T ss_pred HHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCC------------------
Confidence 99999999876545899999999999999999999999999999864469999999999998
Q ss_pred cCccccccCCCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcC
Q 004227 451 DPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG 530 (767)
Q Consensus 451 d~~~g~~~~~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G 530 (767)
|+++|+. +.....++|+++|+++|.+++++|++|+++++||..++++..|+++||+||||+|||||||+++|+|||+.|
T Consensus 368 d~~tg~~-~~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G 446 (701)
T PLN02225 368 DAETGKN-IMVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGG 446 (701)
T ss_pred CCCCCCc-CCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCC
Confidence 4566652 222335799999999999999999999999999999899999999999999999999999999999999999
Q ss_pred CeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHH
Q 004227 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (767)
Q Consensus 531 ~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A 610 (767)
+|||+++|++|++|+||||++++|++++||+++++++|++|+||+|||+.+|+++||++|||+|++|+|+.|+..|+++|
T Consensus 447 ~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A 526 (701)
T PLN02225 447 LKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATA 526 (701)
T ss_pred CEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCEEEEecCCCCcccc--cCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEccc
Q 004227 611 AVIDDRPSCFRFPRGNGIGAV--LPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARF 688 (767)
Q Consensus 611 ~~~~~~P~~irl~r~~~~~~~--~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~s 688 (767)
+..+++|++||+||+..+... ++ .++++++||++++++|+|++||++|+++++|++|++.|+++||+++|||+||
T Consensus 527 ~~~~~gPv~IR~pRg~~~~~~~~~~---~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ 603 (701)
T PLN02225 527 AYVTDRPVCFRFPRGSIVNMNYLVP---TGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARF 603 (701)
T ss_pred HhcCCCCEEEEecccccCCCCcCCC---CCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 866779999999998644321 12 2367889999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 689 CKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 689 lkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
+||||+++|.+++++++.|||+|||+.||||++|++++.++++.+.+.+++++|+||+|+++.
T Consensus 604 ikPLD~e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G 666 (701)
T PLN02225 604 CKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEA 666 (701)
T ss_pred CCCCCHHHHHHHHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCC
Confidence 999999999999999999999999988999999999999998644346899999999999864
No 3
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5.7e-132 Score=1153.96 Aligned_cols=620 Identities=75% Similarity=1.211 Sum_probs=578.9
Q ss_pred ccCCCCCCCccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCC
Q 004227 132 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVG 211 (767)
Q Consensus 132 ~~~~~~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~G 211 (767)
+|.+.++++|+|++||.|.|||+|++++|+++|.+||+++++|+++++||+|++||++||+++||++|++|+||||||+|
T Consensus 23 ~~~~~~~~~~~l~~i~~p~dlk~l~~~~l~~la~~iR~~ii~~~~~~~GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~G 102 (677)
T PLN02582 23 EYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDKILWDVG 102 (677)
T ss_pred cccCCCCCCchhhhCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCccccHHHHHHHHHHhhCCCCCeEEEECc
Confidence 34333456889999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcc
Q 004227 212 HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ 291 (767)
Q Consensus 212 H~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~ 291 (767)
||+|+||+++||+++|.+|||.||++|||++.|++++.|++||+|+++|.|+|+|+|+|+++++++|||++|||++++|+
T Consensus 103 H~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~ 182 (677)
T PLN02582 103 HQSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQ 182 (677)
T ss_pred chHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHH
Q 004227 292 AYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (767)
Q Consensus 292 ~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~ 371 (767)
+|||+|+|+.+++|+++|||||+++|+|+...|+.++++|+++++|++++.++.|..+|+..|.++++++....++..|+
T Consensus 183 ~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (677)
T PLN02582 183 AYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKV 262 (677)
T ss_pred HHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999987778888899
Q ss_pred HHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhcccccccccccc
Q 004227 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFD 451 (767)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd 451 (767)
++..++++.+.+.++||+|||.|+++|||||+++|.++|+++++...++|++||++|+||+||+++|+++.+|||+.+||
T Consensus 263 ~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~H~~~~f~ 342 (677)
T PLN02582 263 DEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFD 342 (677)
T ss_pred HHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhcCCCCCCC
Confidence 99999988764457899999999999999999999999999997422699999999999999999999999999999999
Q ss_pred CccccccCCCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCC
Q 004227 452 PKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGV 531 (767)
Q Consensus 452 ~~~g~~~~~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~ 531 (767)
++++++.+......+|+++|+++|.+++++|++|+++++||++++++..|+++||+||||+|||||+|+++|+|||+.|+
T Consensus 343 ~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~ 422 (677)
T PLN02582 343 PATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAAGLACEGL 422 (677)
T ss_pred cccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHHHHHHHHHHHHCCC
Confidence 99998754333456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHH
Q 004227 532 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (767)
Q Consensus 532 rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~ 611 (767)
|||+++|++|++|+||||++++|++++||+++++++|++|.||+|||+.+|+++||++||++|++|+|+.|++.|+++|+
T Consensus 423 kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al 502 (677)
T PLN02582 423 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAA 502 (677)
T ss_pred eEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCEEEEecCCCCcccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCC
Q 004227 612 VIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKP 691 (767)
Q Consensus 612 ~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkP 691 (767)
...++|++||++|+......+|.....+.+++||++++++|+|++||++|+++++|++|++.|+++||+++|||++|+||
T Consensus 503 ~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkP 582 (677)
T PLN02582 503 AIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVADARFCKP 582 (677)
T ss_pred hCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCC
Confidence 76679999999998643323333222356789999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 692 LDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 692 lD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
||++++.+++++++.+||+|||+.||||++|++++.+++..+++.+++++|+||+|+++.
T Consensus 583 lD~~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G 642 (677)
T PLN02582 583 LDRALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHG 642 (677)
T ss_pred CCHHHHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcC
Confidence 999999999999999999999988999999999999987543346899999999999764
No 4
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.3e-132 Score=1150.22 Aligned_cols=578 Identities=71% Similarity=1.176 Sum_probs=543.7
Q ss_pred ccCCCCCCCccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCC
Q 004227 132 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVG 211 (767)
Q Consensus 132 ~~~~~~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~G 211 (767)
+|+++||+||+||+||+|.|||+|++++|+++|++||+++++++++++||+|++||++||+++||++|++|+||||||+|
T Consensus 56 ~~~~~~~~~~~l~~i~~p~~~k~l~~~~L~~la~eiR~~ii~~~~~~~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~G 135 (641)
T PLN02234 56 EYYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNVSKTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVG 135 (641)
T ss_pred cccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhhcCCCccccchHHHHHHHHHHhcCCCCCeEEEecc
Confidence 88899999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcc
Q 004227 212 HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ 291 (767)
Q Consensus 212 H~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~ 291 (767)
||+|+||+++||+++|.+|||.||++|||++.|++++.|++||+|+|||+|+|||+|+|+++.+++|||++||||++||+
T Consensus 136 Hqaya~~~ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~ 215 (641)
T PLN02234 136 HQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQ 215 (641)
T ss_pred hhHHHHHHHHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHH
Q 004227 292 AYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (767)
Q Consensus 292 ~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~ 371 (767)
+|||||+|++.++||++|+|||+++++||...||+++++++++++|++++.++.|.. ++..
T Consensus 216 ~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~----------------~~~~--- 276 (641)
T PLN02234 216 AYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIR----------------ETSS--- 276 (641)
T ss_pred HHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhccccccc----------------CCHH---
Confidence 999999999888999999999999899998889999999999999999999987721 1222
Q ss_pred HHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhcccccccccccc
Q 004227 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFD 451 (767)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd 451 (767)
.+||+|||+|+|+|||||+++|.++|+++++.+.++|++||++|+||+||+++|+.+++||++.+||
T Consensus 277 -------------~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~ 343 (641)
T PLN02234 277 -------------TLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFD 343 (641)
T ss_pred -------------HHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCC
Confidence 3499999999999999999999999999987544689999999999999999999888999999999
Q ss_pred CccccccCCCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCC
Q 004227 452 PKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGV 531 (767)
Q Consensus 452 ~~~g~~~~~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~ 531 (767)
++++++.+......+|+++|+++|.+++++||+|+++++||+++++++.|+++||+||||+|||||+|+++|+|||++|+
T Consensus 344 ~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~ 423 (641)
T PLN02234 344 PETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGL 423 (641)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCC
Confidence 99998876555567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHH
Q 004227 532 KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (767)
Q Consensus 532 rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~ 611 (767)
|||+++|++|++|+||||++++|++++||+++++++|++|.||+|||+.+|+++||++|||+|++|+|+.|++.|+++|+
T Consensus 424 rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~ 503 (641)
T PLN02234 424 KPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAA 503 (641)
T ss_pred eEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred hhCCCCEEEEecCCCCcccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCC
Q 004227 612 VIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKP 691 (767)
Q Consensus 612 ~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkP 691 (767)
..+++|++||++|+......+|.+.+..++++||++++++|+|++||++|+++++|++|+++|+++||+++|||++|++|
T Consensus 504 ~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikP 583 (641)
T PLN02234 504 AIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKP 583 (641)
T ss_pred hCCCCCEEEEeecccccccccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCC
Confidence 76779999999998754333443223456889999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEE
Q 004227 692 LDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIF 741 (767)
Q Consensus 692 lD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~ 741 (767)
||++++++++++++.|||+|||..||||++|++++.++++.|.+.|+.|.
T Consensus 584 lD~~~i~sl~k~~~~vVt~Ee~~~GG~Gs~Va~~l~e~~~~~~~~~~~~~ 633 (641)
T PLN02234 584 LDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKVYRT 633 (641)
T ss_pred CCHHHHHHHHHhCCEEEEECCCCCCcHHHHHHHHHHHcCCCCCCceEEEE
Confidence 99999999999999999999998999999999999999998888777554
No 5
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=2.9e-121 Score=1066.71 Aligned_cols=592 Identities=51% Similarity=0.838 Sum_probs=547.9
Q ss_pred ccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhC
Q 004227 143 LDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTG 222 (767)
Q Consensus 143 l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G 222 (767)
|++|+.|.|||+|+.++|+++|.+||+++++|+++++||+|++||++||+++||++|+.|+||||||+|||+|+|++++|
T Consensus 1 ~~~i~~p~dl~~l~~~~l~~la~~iR~~~i~~~~~~~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G 80 (617)
T TIGR00204 1 LSLINSPQELRLLSIDELEKLCDELRRYLLESVSASGGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTG 80 (617)
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHc
Q 004227 223 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL 302 (767)
Q Consensus 223 ~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~ 302 (767)
+.++|.+||+.|+++|||++.|++++.|++||+|+++|+|+|+|+|.|+++++.+|||++|||+++||++|||+|+|+.+
T Consensus 81 ~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~ 160 (617)
T TIGR00204 81 RREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDL 160 (617)
T ss_pred cHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhc
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCC
Q 004227 303 DANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISAS 382 (767)
Q Consensus 303 ~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~ 382 (767)
++|+++|+|||++ ++ ..+++.++++|+++|.++.|..++...+.+++.++.-...+++|+++.+|+++.+
T Consensus 161 ~l~~i~ii~~N~~-~i--------~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~- 230 (617)
T TIGR00204 161 KTDMIVILNDNEM-SI--------SENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP- 230 (617)
T ss_pred CCCEEEEEECCCc-cc--------CCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc-
Confidence 9999999999996 22 2457888999999999999999999999988766533344788999999998876
Q ss_pred hhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccccccCccccccCCCC
Q 004227 383 GSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKS 462 (767)
Q Consensus 383 ~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd~~~g~~~~~~~ 462 (767)
.++||+|||+|+++|||||+++|.++|+++++ .++|++||++|.||+||+++|+++.+||+..+|++++++......
T Consensus 231 -~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~--~~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~~~~~~~~~~ 307 (617)
T TIGR00204 231 -GTFFEELGFNYIGPVDGHDLLELIETLKNAKK--LKGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLSTGCLPKSKS 307 (617)
T ss_pred -cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCchhhcChhhccCCCCCChhhCCcCCCCC
Confidence 38899999999989999999999999999987 468999999999999999999877789999999998876433323
Q ss_pred cchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHH
Q 004227 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFL 542 (767)
Q Consensus 463 ~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl 542 (767)
...+|+++|+++|.+++++|++|+++++||.++++++.|+++||+||||+|||||+|+++|+|||+.|++||+++|++|+
T Consensus 308 ~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~Fl 387 (617)
T TIGR00204 308 ALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFL 387 (617)
T ss_pred CCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHHH
Confidence 45689999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 543 QRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 543 ~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
+|+||||++++|++++||+++++++|++|.||+|||+++|+++||++||++|++|+|+.|++.++++|++..++|+|||+
T Consensus 388 ~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~ 467 (617)
T TIGR00204 388 QRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRY 467 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99999999999999999999999999889999999999999999999999999999999999999999976569999999
Q ss_pred cCCCCcccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc
Q 004227 623 PRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN 702 (767)
Q Consensus 623 ~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~ 702 (767)
+|+.......++ ..+.+++|+++++++|+|++||++|.++++|++|+++|+++||+++|||++|++|||++++.++++
T Consensus 468 ~r~~~~~~~~~~--~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~ 545 (617)
T TIGR00204 468 PRGNAVGVELTP--EPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAA 545 (617)
T ss_pred ccCCcCCcccCC--ccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHh
Confidence 998643322221 236788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 703 EHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 703 ~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
+++++||+|||+ .||||++|++++.++++ +.+++++|+||.|+++..
T Consensus 546 k~~~vvtvEE~~~~GGlGs~v~~~l~~~~~---~~~v~~ig~~d~~~~~g~ 593 (617)
T TIGR00204 546 SHEKLVTVEENAIMGGAGSAVLEFLMDQNK---LVPVKRLGIPDFFIPHGT 593 (617)
T ss_pred hcCeEEEEECCCCccChHHHHHHHHHhcCC---CCCeEEEeCCCcCcCCCC
Confidence 999999999998 69999999999999873 357899999999998543
No 6
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=5.9e-120 Score=1058.78 Aligned_cols=601 Identities=57% Similarity=0.927 Sum_probs=555.0
Q ss_pred CCCCccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHH
Q 004227 137 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYV 216 (767)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~ 216 (767)
+|.+++|++||.|.|||+|+.++|+++|++||+++++|+++++||+|++||++||+++||++|++|+||||||+|||+|+
T Consensus 3 ~~~~~~l~~i~~p~dl~~l~~~~l~~~a~~iR~~ii~~~~~~~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~ 82 (641)
T PRK12571 3 RPKTPLLDRIKGPADLRALSDAELEQLADELRAEVISAVSETGGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYP 82 (641)
T ss_pred CCCCChhhhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHH
Confidence 46678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHH
Q 004227 217 HKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM 296 (767)
Q Consensus 217 ~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAl 296 (767)
|++|+|++++|.+|||.||++|||++.|+++++++.||.+++++.|+|+|+|.++.+++++|||++|||+++||++|||+
T Consensus 83 ~~~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal 162 (641)
T PRK12571 83 HKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEAL 162 (641)
T ss_pred HHHHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh
Q 004227 297 NNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376 (767)
Q Consensus 297 n~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r 376 (767)
++|+++++|+++|+|||+++ + ..++++++++|++++.++.|+.+|+..+.+++.+|..+..+..++++.++
T Consensus 163 ~~a~~~~~~li~I~dnN~~~-i--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (641)
T PRK12571 163 NNAGAADRRLIVILNDNEMS-I--------APPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVT 233 (641)
T ss_pred HHHHHhCCCEEEEEECCCee-e--------cCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Confidence 99999999999999999962 1 23577889999999999999999999999999999888888889999999
Q ss_pred hccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccccccCcccc
Q 004227 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGK 456 (767)
Q Consensus 377 ~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd~~~g~ 456 (767)
.++.+ ..+||+|||+|+++|||||+++|.++|+++++. .++|++||++|+||+|++++|+.+.+|||.++|+.++++
T Consensus 234 ~~~~~--~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~~~~ 310 (641)
T PRK12571 234 GMIGG--GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFDVVTGL 310 (641)
T ss_pred hccch--hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEecCccCcchhhcCCCcccCCCCcCCCCCc
Confidence 88764 467999999999889999999999999999863 378999999999999999999988899999999998887
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEe
Q 004227 457 QFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCA 536 (767)
Q Consensus 457 ~~~~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~ 536 (767)
+.+.+....+|+++|+++|.+++++||+|+++++|+.+++++..|+++||+||||+||+||+|+++|+|||+.|++||++
T Consensus 311 ~~~~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~ 390 (641)
T PRK12571 311 QKKSAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA 390 (641)
T ss_pred ccCCCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEE
Confidence 54433345799999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCC
Q 004227 537 IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDR 616 (767)
Q Consensus 537 tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~ 616 (767)
+|++|++|++|||++++|++++||+++++++|++|+||+|||+++|+++||++||++|++|+|+.|++.++++|++.+++
T Consensus 391 ~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~ 470 (641)
T PRK12571 391 VYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDG 470 (641)
T ss_pred ehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999875689
Q ss_pred CEEEEecCCCCcccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHH
Q 004227 617 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL 696 (767)
Q Consensus 617 P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~ 696 (767)
|++||++|++.....+|. ..+.+++||+.++++|+|++||++|++++.|++|++.|+++||+++|||+++++|||+++
T Consensus 471 P~~ir~~r~~~~~~~~~~--~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~ 548 (641)
T PRK12571 471 PIAVRFPRGEGVGVEIPA--EGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEAL 548 (641)
T ss_pred cEEEEEecCcCCccccCC--CCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHH
Confidence 999999998643323332 235678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 697 IRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 697 i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
+.++++++ +++|+||+. .||||++|++++.++++.+.+.+++++|+||.|+++..
T Consensus 549 i~sv~k~~-~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~ 604 (641)
T PRK12571 549 TDLLVRHH-IVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHAS 604 (641)
T ss_pred HHHHhhhC-CEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCC
Confidence 98888776 466666665 79999999999999987543468999999999997654
No 7
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.3e-112 Score=986.68 Aligned_cols=553 Identities=38% Similarity=0.651 Sum_probs=501.0
Q ss_pred cccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHh
Q 004227 142 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILT 221 (767)
Q Consensus 142 ~l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~ 221 (767)
+|++|+.|.|||+|+.++|++||++||.++++.+++++||++++||++|++++||++||.|+|+||||+|||+|+|++++
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~~~ir~~~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLASEIRTALLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHH
Q 004227 222 GRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGF 301 (767)
Q Consensus 222 G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~ 301 (767)
|++..+.+.|+.|+++|||++.|++++.|+.||+|+++|+|+|+|+|+|+++.+++|||++|||++++|++|||||+|+.
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~ 161 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE 161 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCC
Q 004227 302 LDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISA 381 (767)
Q Consensus 302 ~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~ 381 (767)
|++|+|+|||||++ ++ ..+++.++.+|.+++.++. .
T Consensus 162 ~k~~li~Ii~dN~~-si--------~~~~~~~~~~l~~~~~~~~-------------------~---------------- 197 (581)
T PRK12315 162 LKSNLIIIVNDNQM-SI--------AENHGGLYKNLKELRDTNG-------------------Q---------------- 197 (581)
T ss_pred hCCCEEEEEECCCC-cC--------CCCCchhhhhhhhhhhccc-------------------c----------------
Confidence 99999999999996 22 2234444444433322110 0
Q ss_pred ChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccccccCccccccCCC
Q 004227 382 SGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTK 461 (767)
Q Consensus 382 ~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd~~~g~~~~~~ 461 (767)
+...+|++|||.+++++||||++++.++++++++ .++|++||++|.||+||+++++++.+||+..+|+..+++..++.
T Consensus 198 ~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~~~~~~ 275 (581)
T PRK12315 198 SENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLETGQSKVPA 275 (581)
T ss_pred cHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcccCcccCCC
Confidence 1123489999999987799999999999999987 57999999999999999987778789999989998887644322
Q ss_pred CcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEeechhH
Q 004227 462 SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSF 541 (767)
Q Consensus 462 ~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~F 541 (767)
...+|+++|+++|.+++++|++++++++|+++++++..|+++||+||||+|||||+|+++|+|||+.|++||+.+|++|
T Consensus 276 -~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~F 354 (581)
T PRK12315 276 -SGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTF 354 (581)
T ss_pred -CCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHH
Confidence 2568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEE
Q 004227 542 LQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621 (767)
Q Consensus 542 l~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~ir 621 (767)
++|+||||++++|++++||+++++++|+.+ ||+|||+++|+++||++||++|++|+|+.|++.++++|++..++|++||
T Consensus 355 l~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir 433 (581)
T PRK12315 355 LQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIR 433 (581)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999999999999877 9999999999999999999999999999999999999987557999999
Q ss_pred ecCCCCcccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcC-CCcEEEEEcccCCCCcHHHHHHH
Q 004227 622 FPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQL 700 (767)
Q Consensus 622 l~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~-GI~v~VIdl~slkPlD~e~i~~~ 700 (767)
++|+...... . ....+..+++.++++|+|++||++|+++++|++|++.|+++ ||+++|||++|+||||++.++++
T Consensus 434 ~~r~~~~~~~--~--~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~ 509 (581)
T PRK12315 434 VPEHGVESGP--T--VDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKL 509 (581)
T ss_pred EcCCccCCCC--C--CccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHH
Confidence 9998743211 1 11234456889999999999999999999999999999999 99999999999999999999999
Q ss_pred hccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 701 ANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 701 ~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
.++++.+||+|||+ .||||++|++++.+++ .+++++|+||+|+++.
T Consensus 510 ~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g 556 (581)
T PRK12315 510 KEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRV 556 (581)
T ss_pred HhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCC
Confidence 99999999999998 6999999999998875 4789999999999754
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.3e-107 Score=949.84 Aligned_cols=553 Identities=59% Similarity=0.956 Sum_probs=498.2
Q ss_pred CCCCccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHH
Q 004227 137 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYV 216 (767)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~ 216 (767)
++.+|+|++|+.|.|||+|+.++|+++|++||+++++|+.+++||+|++||++|++++||++|+.++||||||+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~y~ 80 (580)
T PRK05444 1 IPKYPLLDTINSPADLKKLSEEELPQLADEIREFLIDVVSKTGGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYP 80 (580)
T ss_pred CCCCchhhccCCHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHHHH
Confidence 46789999999999999999999999999999999999988899999999999999999999998999999999999999
Q ss_pred HHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHc-CCCCeEEEEEcCCcccCcchHHH
Q 004227 217 HKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDIL-GKNNNVISVIGDGAMTAGQAYEA 295 (767)
Q Consensus 217 ~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~-g~~~~Vv~viGDGal~eG~~~EA 295 (767)
|++++|++++|.+||+.|+++|||++.+++++++++|++|+++|+|+|+|+|.|++ +++++|||++|||+++||++|||
T Consensus 81 ~~~~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea 160 (580)
T PRK05444 81 HKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA 160 (580)
T ss_pred HHHHhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH
Confidence 99999999999999999999999999899999999999999999999999999998 68899999999999999999999
Q ss_pred HHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 004227 296 MNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (767)
Q Consensus 296 ln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~ 375 (767)
+++|+++++|+++|+|||++ ++ ++++..+.. .+ ...++.
T Consensus 161 l~~A~~~~~nli~IvdnN~~-~i-----~~~~~~~~~---~~-------------------------~~~~~~------- 199 (580)
T PRK05444 161 LNNAGDLKSDLIVILNDNEM-SI-----SPNVGALSN---YL-------------------------ARLRSS------- 199 (580)
T ss_pred HHHHHhhCCCEEEEEECCCC-cC-----CCcchhhhh---hh-------------------------ccccHH-------
Confidence 99999999999999999985 22 222110000 00 001111
Q ss_pred hhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccccccCccc
Q 004227 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTG 455 (767)
Q Consensus 376 r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd~~~g 455 (767)
.+|++|||+++.++||||++++.++++++++ .++|++|+++|.||+||+++|+++.+||+.+.|+...+
T Consensus 200 ---------~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~ 268 (580)
T PRK05444 200 ---------TLFEELGFNYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETG 268 (580)
T ss_pred ---------HHHHHcCCCeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccC
Confidence 3489999999877899999999999999886 46999999999999999999877778999998887765
Q ss_pred cccCCC-CcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeE
Q 004227 456 KQFKTK-SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPF 534 (767)
Q Consensus 456 ~~~~~~-~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~ 534 (767)
+...++ ....+|+++|+++|.+++++||+++++++|+.+++++..|+++||+||||+||+||+|+++|+|||+.|++||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~ 348 (580)
T PRK05444 269 EQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPV 348 (580)
T ss_pred CccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeE
Confidence 533221 2236899999999999999999999999999888889899999999999999999999999999999999999
Q ss_pred EeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhC
Q 004227 535 CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID 614 (767)
Q Consensus 535 ~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~ 614 (767)
+++|++|++|++|||++++|++++||+++++++|++|.||+|||+++|+++||++||++|++|+|++|++.++++|++.+
T Consensus 349 ~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~ 428 (580)
T PRK05444 349 VAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYD 428 (580)
T ss_pred EEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999766
Q ss_pred CCCEEEEecCCCCcccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcH
Q 004227 615 DRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDT 694 (767)
Q Consensus 615 ~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~ 694 (767)
++|+|||++|+.......+ +.+.+++|+++++++|+|++||++|+++++|++|++.|+ +++|||++|++|||+
T Consensus 429 ~~P~~ir~~r~~~~~~~~~---~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~ 501 (580)
T PRK05444 429 DGPIAIRYPRGNGVGVELP---ELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDE 501 (580)
T ss_pred CCcEEEEecCCCCCCCCCC---CcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCH
Confidence 8999999999875332212 145688999999999999999999999999999999996 899999999999999
Q ss_pred HHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 695 DLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 695 e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
+++.+++++++++||+||++ .||||++|++++.++++ +.+++++|+||.|++..
T Consensus 502 ~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g 556 (580)
T PRK05444 502 ELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHG 556 (580)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCC
Confidence 99999999999999999998 49999999999999875 34789999999998754
No 9
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-95 Score=805.80 Aligned_cols=576 Identities=31% Similarity=0.423 Sum_probs=479.3
Q ss_pred CccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhh-ccCCCCCCcccHHHHHHHHHh-hcC----CC----CcEEEeC
Q 004227 140 TPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWD 209 (767)
Q Consensus 140 ~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~-~~gGH~gsslg~vel~~aL~~-~~~----~p----~Dr~i~s 209 (767)
||.+++++.+.+++|+++ ..+++++ ..+||+++++|.+++...||. +++ +| +|||+||
T Consensus 2 ~~~~~~~~~~~~~n~lri------------~si~~~~~a~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls 69 (632)
T KOG0523|consen 2 TPSQDSQILKDAVNNLRI------------LSIDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLS 69 (632)
T ss_pred CchhhhhhhHHHhhhhhh------------hhHHHHHhhhcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEe
Confidence 456666666666555554 4455554 368999999999999999874 332 23 6999999
Q ss_pred CCChH---HHHHHHhC--ChHHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC-CCeEEEEE
Q 004227 210 VGHQA---YVHKILTG--RRSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK-NNNVISVI 282 (767)
Q Consensus 210 ~GH~~---y~~~~l~G--~~~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~-~~~Vv~vi 282 (767)
+||+| |+|++|+| ++++|.+|||.++ +.|||.+ +++++.+++||+|++|++|+|||++.|++++ +++|||++
T Consensus 70 ~GHa~~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~~-~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vl 148 (632)
T KOG0523|consen 70 NGHACPLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPEP-ELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVL 148 (632)
T ss_pred ccccchHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCcc-cCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEE
Confidence 99999 99999999 6899999999998 5788885 7899999999999999999999999999999 99999999
Q ss_pred cCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCC
Q 004227 283 GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGG 362 (767)
Q Consensus 283 GDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~ 362 (767)
|||+++||++||||++|++++++.+++++||+++++++.+..|...+|..++-...++++..+.+.. +++++|.+++
T Consensus 149 GDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d---~d~i~ka~~~ 225 (632)
T KOG0523|consen 149 GDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGD---VDEIRKAIGK 225 (632)
T ss_pred cCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEEcCcC---HHHHHHHHhh
Confidence 9999999999999999999996666666666667888888889999988876666666655433222 2333332221
Q ss_pred chHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhcc-
Q 004227 363 QTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAA- 441 (767)
Q Consensus 363 ~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~- 441 (767)
. .+.+++...-..+.|+++|..+++++++|......+.++++++..+- |+++++.++|+++||..+.+.
T Consensus 226 a---------~~~k~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~~~~~ 295 (632)
T KOG0523|consen 226 A---------KSVKGKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKPVEDA 295 (632)
T ss_pred h---------hhccCCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCcccccc
Confidence 1 14577766666788999999999999999998888888888775444 999999999999998665443
Q ss_pred -ccccccccccCccccccCCCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHH
Q 004227 442 -DRMHGVVKFDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAV 520 (767)
Q Consensus 442 -~~~Hg~~~fd~~~g~~~~~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~v 520 (767)
...|.+++++.++..+.+..++...++++|.++|.++++.+|+++.+++|+.+|+.++-|+++||+|||++||+||+|+
T Consensus 296 ~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~mv 375 (632)
T KOG0523|consen 296 RAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNMV 375 (632)
T ss_pred cccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhhH
Confidence 5678899999988888887878899999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHhcCC-eeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecC
Q 004227 521 TFAAGLASEGV-KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPS 598 (767)
Q Consensus 521 g~AaGlA~~G~-rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Ps 598 (767)
++|+|+|..|. +|||.||+.|++|||||++++ ++.+.++++++.|.+. +|+||||||++||+++||++||++||+|+
T Consensus 376 ~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr~~-a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~Pa 454 (632)
T KOG0523|consen 376 GIANGIACRGRTIPFCGTFAAFFTRAFDQVRMG-ALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPA 454 (632)
T ss_pred HhhhchhcCCCccchhHHHHHHHHHhhhheeeh-hhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecC
Confidence 99999999997 999999999999999999766 7778888888877765 89999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCEEEEecCCCCcccccCCCCCCCCcccCcee-EeecCC-cEEEEEechhHHHHHHHHHHHhc
Q 004227 599 DEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGR-ILMEGD-RVAILGYGSIVQQCVLAANMLKS 676 (767)
Q Consensus 599 d~~E~~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~-vl~eG~-dvtIva~Gs~v~~al~Aa~~L~~ 676 (767)
|.+|+..++..|++.++.|+|++++|++++..+. ...+++||++ ++++++ ||+||++|++|++|++||+.|++
T Consensus 455 D~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~-----~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~ 529 (632)
T KOG0523|consen 455 DGNETENAVATAANTKGTPSIRTLSRQNLPIYNN-----TEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSE 529 (632)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCccccccCC-----CchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHHh
Confidence 9999999999999988889999999998655432 2347899986 888887 99999999999999999999999
Q ss_pred CCCcEEEEEcccCCCCcHHHHHHHhccCC-EEEEEcCCCC-CCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 677 QDISVTVADARFCKPLDTDLIRQLANEHE-ILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 677 ~GI~v~VIdl~slkPlD~e~i~~~~~~~~-~vVvvEe~~~-GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
+||+++|+|++++||||..+|+++.+.++ ++.|+|+++. ||++..+.. ..+.+++. +++.=.+|+|+.+..
T Consensus 530 ~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a---~~g~~~~~--~~~~~~~~~~~~sG~ 602 (632)
T KOG0523|consen 530 DGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTA---AWGKYPGI--LVPSLGVDTFGRSGP 602 (632)
T ss_pred cCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeee---hhcccCCc--cceeeccccCCcCCC
Confidence 99999999999999999999999999887 4555555553 455554443 33333332 244445677776653
No 10
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=7e-91 Score=817.06 Aligned_cols=513 Identities=24% Similarity=0.337 Sum_probs=431.4
Q ss_pred HHHHHHHHHHHHHHHHhh-ccCCCCCCcccHHHHHHHHHh-h--cCC------CCcEEEeCCCChH---HHHHHHhCCh-
Q 004227 159 DLEQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-V--FNT------PDDKIIWDVGHQA---YVHKILTGRR- 224 (767)
Q Consensus 159 ~L~~la~~iR~~i~~~v~-~~gGH~gsslg~vel~~aL~~-~--~~~------p~Dr~i~s~GH~~---y~~~~l~G~~- 224 (767)
.++++|++||.++++|+. .++||+|++||++|++++||+ + |+. ++||||||+||++ |+|++++|++
T Consensus 5 ~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~ 84 (661)
T PTZ00089 5 IDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDL 84 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCC
Confidence 357789999999999995 589999999999999999996 5 432 4799999999999 9999999984
Q ss_pred --HHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCcccCcc
Q 004227 225 --SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTAGQ 291 (767)
Q Consensus 225 --~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~----------~~~Vv~viGDGal~eG~ 291 (767)
++|.+||+.++ ++|||++.+++++.+++||+|+++|.|+|||+|.|+++. +++|||++|||+++||+
T Consensus 85 ~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~ 164 (661)
T PTZ00089 85 SMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGV 164 (661)
T ss_pred CHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHH
Confidence 78999999988 689999988999999999999999999999999999764 78999999999999999
Q ss_pred hHHHHHHHHHcCC-CEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHH
Q 004227 292 AYEAMNNAGFLDA-NLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAA 369 (767)
Q Consensus 292 ~~EAln~A~~~~~-nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~ 369 (767)
+|||+|+|+.+++ |||+|+|||++ ++.++... ..+++..
T Consensus 165 ~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~---------------------------------------~~~~~~~ 205 (661)
T PTZ00089 165 SQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLS---------------------------------------FTEDVEK 205 (661)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCcccccCcccc---------------------------------------cCccHHH
Confidence 9999999999984 79999999995 33222110 0123333
Q ss_pred HHHHHHhhccCCChhhhHhhcCCeEeeccCCC-CHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc
Q 004227 370 KVDEYARGLISASGSTFFEELGLYYIGPVDGH-NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (767)
Q Consensus 370 k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh-di~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (767)
+ |++|||+++.++||| |+++|.++++++++. .++|++|+++|.||+| +.+ ++..+|||.+
T Consensus 206 ~----------------f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~-~~~P~~I~~~T~kG~G-~~~-e~~~~~H~~~ 266 (661)
T PTZ00089 206 K----------------YEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS-KGKPKLIIVKTTIGYG-SSK-AGTEKVHGAP 266 (661)
T ss_pred H----------------HHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCcEEEEEEeeecCC-CCc-CCCCCccCCC
Confidence 3 999999999766999 999999999999863 3689999999999999 444 4557899875
Q ss_pred c-------------------ccCc--c----------ccc------------------------------c---------
Q 004227 449 K-------------------FDPK--T----------GKQ------------------------------F--------- 458 (767)
Q Consensus 449 ~-------------------fd~~--~----------g~~------------------------------~--------- 458 (767)
. |+.. . ++. .
T Consensus 267 ~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (661)
T PTZ00089 267 LGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLP 346 (661)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhhh
Confidence 2 4431 0 000 0
Q ss_pred --CCCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-----hhhhhhCC-CcEEeccccHHHHHHHHHHHHh-c
Q 004227 459 --KTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRFP-DRCFDVGIAEQHAVTFAAGLAS-E 529 (767)
Q Consensus 459 --~~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-----~~f~~~~P-~R~~d~GIaE~~~vg~AaGlA~-~ 529 (767)
..+.+..+.+++++++|.++++.+|+++.+++|+.+++.+ ..|+++|| +||||+|||||+|+++|+|||+ .
T Consensus 347 ~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~ 426 (661)
T PTZ00089 347 KYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHG 426 (661)
T ss_pred hhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHcC
Confidence 0011234678899999999999999999999999888765 37999999 8999999999999999999999 7
Q ss_pred CCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHH
Q 004227 530 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (767)
Q Consensus 530 G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~ 608 (767)
|++||++||++|++|++||| ++.|++++||++++++.|+ +|+||||||+++|+++||+||||+|++|+|++|+..+++
T Consensus 427 G~~P~~~tf~~Fl~Ra~dqi-r~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~ 505 (661)
T PTZ00089 427 GFIPFGATFLNFYGYALGAV-RLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYA 505 (661)
T ss_pred CCeEEEEehHHHHHHHHHHH-HHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHH
Confidence 89999999999999999996 5669999999999988876 799999999999999999999999999999999999999
Q ss_pred HHHhhCCCCEEEEecCCCCcccccCCCCCCCCcccCceeEeecC---CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEE
Q 004227 609 TAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG---DRVAILGYGSIVQQCVLAANMLKSQDISVTVAD 685 (767)
Q Consensus 609 ~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG---~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VId 685 (767)
+++...++|+|||++|++.+.. +. ....+..+++++++++ .|++||++|+++.+|++|++.|++ ||+++|||
T Consensus 506 ~al~~~~gP~~irl~R~~~~~~--~~--~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~ 580 (661)
T PTZ00089 506 LALANAKTPTILCLSRQNTPPL--PG--SSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVS 580 (661)
T ss_pred HHHHcCCCCEEEEecCCCCCCc--CC--CccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEe
Confidence 9997678999999999875432 21 1223445667899975 799999999999999999999999 99999999
Q ss_pred cccCCCCcHHHHHHH---hc-cCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 686 ARFCKPLDTDLIRQL---AN-EHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 686 l~slkPlD~e~i~~~---~~-~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
++|+||||.+.+... +. ++..+|++|++...||.. . . .+++|++| |+++.
T Consensus 581 ~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g~~~----------~---~--~~~igv~~-Fg~sg 634 (661)
T PTZ00089 581 MPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFGWEK----------Y---S--HVHVGISG-FGASA 634 (661)
T ss_pred CCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHHHHh----------c---C--CeEEECCC-ccccC
Confidence 999999999986543 44 455799999998766531 1 1 15799998 98754
No 11
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2e-90 Score=811.98 Aligned_cols=518 Identities=21% Similarity=0.294 Sum_probs=428.6
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHhhc-C----C----CCcEEEeCCCChH---HHHHHHhCCh---
Q 004227 161 EQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHRVF-N----T----PDDKIIWDVGHQA---YVHKILTGRR--- 224 (767)
Q Consensus 161 ~~la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~~~-~----~----p~Dr~i~s~GH~~---y~~~~l~G~~--- 224 (767)
+++|++||+++++|+.+ ++||+|++||++|++++||+.+ + + ++||||||+||++ |++++++|+.
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPI 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCCCCH
Confidence 57799999999999986 8999999999999999998643 2 2 2799999999999 9999999974
Q ss_pred HHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCcccCcchH
Q 004227 225 SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTAGQAY 293 (767)
Q Consensus 225 ~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~----------~~~Vv~viGDGal~eG~~~ 293 (767)
++|.+|||.|+ ++|||+...++...+++|++|+++|.|+|||+|.|+++. +++|||++|||+++||++|
T Consensus 85 e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12753 85 EELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHH
Confidence 88999999998 799998877788888999999999999999999998863 6899999999999999999
Q ss_pred HHHHHHHHcCC-CEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 004227 294 EAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (767)
Q Consensus 294 EAln~A~~~~~-nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~ 372 (767)
||+|+|+.+++ |||+|+|||++ ++ ++++..+. .+++.++
T Consensus 165 EA~~~A~~~kL~nLi~ivd~N~~-~i-----~~~~~~~~--------------------------------~~~~~~~-- 204 (663)
T PRK12753 165 EVCSLAGTLGLGKLIGFYDHNGI-SI-----DGETEGWF--------------------------------TDDTAKR-- 204 (663)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC-cC-----CCChhhhc--------------------------------ChhHHHH--
Confidence 99999999996 69999999995 22 33322100 1344444
Q ss_pred HHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc----
Q 004227 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV---- 448 (767)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~---- 448 (767)
|++|||+++.++||||+++|.+++++++.. .++|++|+++|.||+|++++|+. .+|||.+
T Consensus 205 --------------f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~-~~~P~~I~~~T~kG~G~~~~e~~-~~~H~~~l~~~ 268 (663)
T PRK12753 205 --------------FEAYHWHVIHEIDGHDPQAIKEAILEAQSV-KDKPSLIICRTIIGFGSPNKAGK-EESHGAPLGEE 268 (663)
T ss_pred --------------HHHcCCeEEceeCCCCHHHHHHHHHHHHHC-CCCeEEEEEEEeecCCCCcccCC-CCccCCCCCHH
Confidence 999999998668999999999999998863 47899999999999999998654 6899842
Q ss_pred --------------cccC-----------ccccc------------------------------cCC-------------
Q 004227 449 --------------KFDP-----------KTGKQ------------------------------FKT------------- 460 (767)
Q Consensus 449 --------------~fd~-----------~~g~~------------------------------~~~------------- 460 (767)
+|+. +.+++ .+.
T Consensus 269 ~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (663)
T PRK12753 269 EVALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINEL 348 (663)
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Confidence 2333 11110 000
Q ss_pred --CCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-----hhhhhhCCCcEEeccccHHHHHHHHHHHHh-cCCe
Q 004227 461 --KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRFPDRCFDVGIAEQHAVTFAAGLAS-EGVK 532 (767)
Q Consensus 461 --~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-----~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~-~G~r 532 (767)
+.+....+++++++|.++++++|+++++++|+.+++.+ ..|+++||+||||+||+||+|+++|+|||+ .|++
T Consensus 349 ~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~~ 428 (663)
T PRK12753 349 QANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFV 428 (663)
T ss_pred hccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCCe
Confidence 11234567789999999999999999999999988866 789999999999999999999999999999 7899
Q ss_pred eEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHH
Q 004227 533 PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (767)
Q Consensus 533 P~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~ 611 (767)
||++||++|++|++|||+.. |++++||++++++.|+ +|+||+|||+++|+++||.+|||+|++|+|++|+..+++.++
T Consensus 429 P~~~tf~~F~~r~~~qir~~-a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al 507 (663)
T PRK12753 429 PYTATFLMFVEYARNAARMA-ALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAI 507 (663)
T ss_pred EEEEehHHHHHHHHHHHHHH-HhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHH
Confidence 99999999999999999865 9999999999999988 799999999999999999999999999999999999999999
Q ss_pred hhCCCCEEEEecCCCCcccccCCCCC-CCCcccCceeEeecCC---cEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcc
Q 004227 612 VIDDRPSCFRFPRGNGIGAVLPPNNK-GTPLEIGKGRILMEGD---RVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (767)
Q Consensus 612 ~~~~~P~~irl~r~~~~~~~~p~~~~-~~~~~igk~~vl~eG~---dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~ 687 (767)
+..++|+|||++|++.+.. ..... ...+..|+ +++++|. |++||++|+++.+|++|++.|+++||+++|||++
T Consensus 508 ~~~~gP~~irl~R~~~~~~--~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~ 584 (663)
T PRK12753 508 ERHNGPTALILSRQNLAQQ--ERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMP 584 (663)
T ss_pred hcCCCCEEEEecCCCCCCC--CCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 7668999999999875432 11110 12244444 8899864 9999999999999999999999999999999999
Q ss_pred cCCCCcHHHH--HH-Hhcc-CCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 688 FCKPLDTDLI--RQ-LANE-HEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 688 slkPlD~e~i--~~-~~~~-~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
|++|||++.+ ++ ++.. ....|++|+|.. +.+.+.. +.+.+++|+ |+|....
T Consensus 585 ~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~--------~~~~~~~----~~~~~~iGv-d~Fg~sg 639 (663)
T PRK12753 585 STDIFDAQDEAYRESVLPSNVTARVAVEAGIA--------DYWYKYV----GLKGAIIGM-TGFGESA 639 (663)
T ss_pred cCCccchhHHHHHHhhcccccceEEEEccChH--------HHHHHHc----CCCCeEEEe-CCCcCcC
Confidence 9999999976 22 2222 223499999832 2222211 124577899 7888644
No 12
>PLN02790 transketolase
Probab=100.00 E-value=3.8e-90 Score=810.02 Aligned_cols=510 Identities=21% Similarity=0.338 Sum_probs=429.3
Q ss_pred HHHHHHHHhh-ccCCCCCCcccHHHHHHHHHhh---cCC------CCcEEEeCCCChH---HHHHHHhCCh----HHhHH
Q 004227 167 LRADIVNSVS-KTGGHLSANLGVVELTLALHRV---FNT------PDDKIIWDVGHQA---YVHKILTGRR----SRMNT 229 (767)
Q Consensus 167 iR~~i~~~v~-~~gGH~gsslg~vel~~aL~~~---~~~------p~Dr~i~s~GH~~---y~~~~l~G~~----~~l~t 229 (767)
||.++++|++ +++||+|++||++|++++||+. |+. ++||||||+||++ |++++++|+. ++|.+
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 6999999995 5899999999999999999976 542 4899999999999 9999999985 78999
Q ss_pred HHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHc-----CC-----CCeEEEEEcCCcccCcchHHHHHH
Q 004227 230 MRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDIL-----GK-----NNNVISVIGDGAMTAGQAYEAMNN 298 (767)
Q Consensus 230 lr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~-----g~-----~~~Vv~viGDGal~eG~~~EAln~ 298 (767)
|||.|+ ++|||++.+++++.+++||+|+++|.|+|||+|.|++ ++ +++|||++|||+++||++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 999998 5699999899999999999999999999999999963 42 789999999999999999999999
Q ss_pred HHHcCC-CEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh
Q 004227 299 AGFLDA-NLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376 (767)
Q Consensus 299 A~~~~~-nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r 376 (767)
|+.+++ ||++|+|||++ ++.++... ..+++.++
T Consensus 161 A~~~~L~nli~i~d~N~~~i~~~~~~~---------------------------------------~~~~~~~~------ 195 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHISIDGDTEIA---------------------------------------FTEDVDKR------ 195 (654)
T ss_pred HHHhCCCCEEEEEecCCccccCCcccc---------------------------------------cchhHHHH------
Confidence 999995 69999999995 33322210 01334444
Q ss_pred hccCCChhhhHhhcCCeEeeccCC-CCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc-------
Q 004227 377 GLISASGSTFFEELGLYYIGPVDG-HNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV------- 448 (767)
Q Consensus 377 ~~~~~~~~~lfea~G~~~i~~vDG-hdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~------- 448 (767)
|++|||+++++.+| ||+++|.++++++++. .++|++|+++|.||+|++++| +..+||+.+
T Consensus 196 ----------f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~e-~~~~~H~~~~~~~~~~ 263 (654)
T PLN02790 196 ----------YEALGWHTIWVKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNKA-NSYSVHGAALGEKEVD 263 (654)
T ss_pred ----------HHHcCCeEEEECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCcccc-CCCCcCCCCCCHHHHH
Confidence 99999999954344 8999999999999863 479999999999999999865 457899876
Q ss_pred -----------cccCcccc---------------------------ccC--------------------------CCCcc
Q 004227 449 -----------KFDPKTGK---------------------------QFK--------------------------TKSPT 464 (767)
Q Consensus 449 -----------~fd~~~g~---------------------------~~~--------------------------~~~~~ 464 (767)
+|+..++. +.+ .+.+.
T Consensus 264 ~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (654)
T PLN02790 264 ATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPA 343 (654)
T ss_pred HHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcc
Confidence 45543110 000 01112
Q ss_pred hhHHHHHHHHHHHHHHhCCCEEEEeccccCCcC-----hhhhhhh-CCCcEEeccccHHHHHHHHHHHHhc--CCeeEEe
Q 004227 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-----LNYFQKR-FPDRCFDVGIAEQHAVTFAAGLASE--GVKPFCA 536 (767)
Q Consensus 465 ~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~g-----l~~f~~~-~P~R~~d~GIaE~~~vg~AaGlA~~--G~rP~~~ 536 (767)
..+++++++.|.++.+.+|++++.++|+.+++. +..|+++ ||+||||+|||||+|+++|+|||++ |++||++
T Consensus 344 ~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~ 423 (654)
T PLN02790 344 DATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCA 423 (654)
T ss_pred hHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEE
Confidence 467788889999999999999999999988764 6789988 5999999999999999999999996 6999999
Q ss_pred echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCC
Q 004227 537 IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDD 615 (767)
Q Consensus 537 tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~ 615 (767)
||+.|+.|+++|+ ++.|++++||++++++.|+ +|+||||||+++|+++||+|||++|++|+|++|+..++++++...+
T Consensus 424 tf~~F~~~~~~~i-r~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~ 502 (654)
T PLN02790 424 TFFVFTDYMRAAM-RLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRK 502 (654)
T ss_pred ecHHHHHHHHHHH-HHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCC
Confidence 9999999999998 4569999999999988776 7999999999999999999999999999999999999999987668
Q ss_pred CCEEEEecCCCCcccccCCCCCCCCcccCceeEeecC-----CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCC
Q 004227 616 RPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG-----DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCK 690 (767)
Q Consensus 616 ~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG-----~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slk 690 (767)
+|++||++|++.+.. +.. ....++.|+ ++++++ .|++||++|+++.+|++|++.|+++||+++|||++|++
T Consensus 503 gP~~irl~R~~~~~~--~~~-~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ik 578 (654)
T PLN02790 503 RPTVLALSRQKVPNL--PGT-SIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWE 578 (654)
T ss_pred CCEEEEecCCCCCCC--CCC-cccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999875332 111 124467776 777774 79999999999999999999999999999999999999
Q ss_pred CCcHHHHH---HHh-ccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 691 PLDTDLIR---QLA-NEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 691 PlD~e~i~---~~~-~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
|||++.+. +++ ++++.+|++|+++.+||++ ++. .+.+++|+ |+|+++.
T Consensus 579 pld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~----~~~--------~~~~~igv-d~Fg~sg 630 (654)
T PLN02790 579 LFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEK----YVG--------SKGKVIGV-DRFGASA 630 (654)
T ss_pred hhhhhHHHHHHhhhccccceEEEecCccchhHHH----hcC--------CCceEEEe-CCCcCcC
Confidence 99998754 666 6778899999999899875 211 12367898 8998764
No 13
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=4.4e-88 Score=792.67 Aligned_cols=522 Identities=25% Similarity=0.373 Sum_probs=441.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh-ccCCCCCCcccHHHHHHHHHh-hcC----C----CCcEEEeCCCChH---HHHHHHh
Q 004227 155 LSTEDLEQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-VFN----T----PDDKIIWDVGHQA---YVHKILT 221 (767)
Q Consensus 155 ~~~~~L~~la~~iR~~i~~~v~-~~gGH~gsslg~vel~~aL~~-~~~----~----p~Dr~i~s~GH~~---y~~~~l~ 221 (767)
|++++|+++|+++|+++++|+. +++||+|+++|++|++++||+ +|+ + ++||||+|+||++ |++++++
T Consensus 3 ~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~ 82 (624)
T PRK05899 3 MDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLA 82 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHc
Confidence 5688999999999999999995 588999999999999999986 543 2 3799999999999 9999999
Q ss_pred CC---hHHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCcc
Q 004227 222 GR---RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAM 287 (767)
Q Consensus 222 G~---~~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~----------~~~Vv~viGDGal 287 (767)
|+ +++|.+||+.++ ++|||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++
T Consensus 83 G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~ 162 (624)
T PRK05899 83 GYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDL 162 (624)
T ss_pred CCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchh
Confidence 99 899999999998 699999878889999999999999999999999998887 8999999999999
Q ss_pred cCcchHHHHHHHHHcCC-CEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHH
Q 004227 288 TAGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHE 366 (767)
Q Consensus 288 ~eG~~~EAln~A~~~~~-nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~ 366 (767)
++|++|||+++|+.+++ |+++|+|||++ ++ +++.... ...+
T Consensus 163 ~~g~~~Eal~~A~~~~L~~li~v~dnN~~-~~-----~~~~~~~--------------------------------~~~~ 204 (624)
T PRK05899 163 MEGISHEACSLAGHLKLGNLIVIYDDNRI-SI-----DGPTEGW--------------------------------FTED 204 (624)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEECCCC-cc-----ccccccc--------------------------------cccc
Confidence 99999999999999995 59999999985 21 1111100 0022
Q ss_pred HHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccc
Q 004227 367 VAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHG 446 (767)
Q Consensus 367 ~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg 446 (767)
+. .+|++|||+++ .|||||+++|.++++++++ .++|++|+++|.||+|++++|+ ..+||+
T Consensus 205 ~~----------------~~~~a~G~~~~-~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~kg~g~~~~e~-~~~~H~ 264 (624)
T PRK05899 205 VK----------------KRFEAYGWHVI-EVDGHDVEAIDAAIEEAKA--STKPTLIIAKTIIGKGAPNKEG-THKVHG 264 (624)
T ss_pred HH----------------HHhccCCCeEE-EECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEeccCCccccC-CCcccC
Confidence 23 34999999998 5999999999999999986 4689999999999999999884 467998
Q ss_pred cccccCc--c-----c---ccc--C-------------CC-----------CcchhHHHHHHHHHHHHHHhCCCEEEEec
Q 004227 447 VVKFDPK--T-----G---KQF--K-------------TK-----------SPTLTYTQYFAESLIKEAETDDKIVAIHA 490 (767)
Q Consensus 447 ~~~fd~~--~-----g---~~~--~-------------~~-----------~~~~s~~~af~~aL~~~~~~d~~ivvi~a 490 (767)
.+..+.+ . + +.+ + .+ ....+++++|+++|.+++++||+++++++
T Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~~ 344 (624)
T PRK05899 265 APLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGSA 344 (624)
T ss_pred CCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 6532210 0 0 000 0 00 01234589999999999999999999999
Q ss_pred cccCCcChhhhh------hhCCCcEEeccccHHHHHHHHHHHHhcC-CeeEEeechhHHHhHHHHHHHhhhcCCCCEEEE
Q 004227 491 AMGGGTGLNYFQ------KRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFA 563 (767)
Q Consensus 491 D~~gs~gl~~f~------~~~P~R~~d~GIaE~~~vg~AaGlA~~G-~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv 563 (767)
|+++++++..|. ++||+||||+||+||+|+++|+|||+.| ++||+++|++|++|+++|+++. +++++||+++
T Consensus 345 D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~-~~~~~pv~~v 423 (624)
T PRK05899 345 DLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLA-ALMKLPVIYV 423 (624)
T ss_pred CCccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHH-HhcCCCEEEE
Confidence 999888887776 6899999999999999999999999999 9999999999999999999875 8999999999
Q ss_pred eecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEecCCCCcccccCCCCCCCCcc
Q 004227 564 MDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLE 642 (767)
Q Consensus 564 ~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~ 642 (767)
++++|+ .|.+|+|||+++|+++||++||++|++|+|++|++.+++++++..++|+|||++|+.... +.+....+.++
T Consensus 424 ~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~ 501 (624)
T PRK05899 424 FTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPV--LERTAQEEGVA 501 (624)
T ss_pred EECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCC--cCCcccccccc
Confidence 999998 688999999999999999999999999999999999999999855899999999876432 11110124577
Q ss_pred cCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHH---HHHHh-ccCCEEEEEcCCCCCCH
Q 004227 643 IGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL---IRQLA-NEHEILITVEEGSVGGF 718 (767)
Q Consensus 643 igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~---i~~~~-~~~~~vVvvEe~~~GGl 718 (767)
.|+ +++++|.|++||++|+++++|++|++.|+++||+++|||++|++|||++. +...+ +.+..+|++|++..+||
T Consensus 502 ~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~ 580 (624)
T PRK05899 502 KGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGW 580 (624)
T ss_pred CCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccch
Confidence 776 88999999999999999999999999999999999999999999999983 55555 45567888898877888
Q ss_pred HHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 719 GSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 719 gs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
. .++ +.+++++|++| |+++.
T Consensus 581 ~----~~~--------~~~~~~iGv~~-f~~~g 600 (624)
T PRK05899 581 Y----KYV--------GLDGKVLGIDT-FGASA 600 (624)
T ss_pred h----hhc--------CCCceEEECCC-CCCCC
Confidence 2 222 12568999999 99754
No 14
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1e-86 Score=780.90 Aligned_cols=514 Identities=23% Similarity=0.355 Sum_probs=431.4
Q ss_pred HHHHHHHHHHHHHhh-ccCCCCCCcccHHHHHHHHHh-hcC----CC----CcEEEeCCCChH---HHHHHHhCC---hH
Q 004227 162 QLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWDVGHQA---YVHKILTGR---RS 225 (767)
Q Consensus 162 ~la~~iR~~i~~~v~-~~gGH~gsslg~vel~~aL~~-~~~----~p----~Dr~i~s~GH~~---y~~~~l~G~---~~ 225 (767)
+.|+++|+++++|+. .++||+|+++|++|++++||. +++ +| +||||+|+||.+ |+.+++.|+ .+
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCCCCHH
Confidence 468899999999997 578999999999999999984 443 33 699999999999 999999996 37
Q ss_pred HhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCcccCcchHH
Q 004227 226 RMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAYE 294 (767)
Q Consensus 226 ~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g----------~~~~Vv~viGDGal~eG~~~E 294 (767)
+|.+||+.|+ ++|||++..+++..+++|++|++++.|+|||+|.|+++ .+++|||++|||+++||.+||
T Consensus 82 ~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~E 161 (653)
T TIGR00232 82 DLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYE 161 (653)
T ss_pred HHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHH
Confidence 8999999997 89999987778888999999999999999999999873 478999999999999999999
Q ss_pred HHHHHHHcCC-CEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 004227 295 AMNNAGFLDA-NLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (767)
Q Consensus 295 Aln~A~~~~~-nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~ 372 (767)
|+++|+.+++ ||++|+|||++ ++.+|..+ . .+++..+
T Consensus 162 A~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~-------~--------------------------------~~~~~~~-- 200 (653)
T TIGR00232 162 VASLAGHLKLGKLIVLYDSNRISIDGAVDGS-------F--------------------------------TEDVAKR-- 200 (653)
T ss_pred HHHHHHHhCCCcEEEEEeCCCeeeccccccc-------c--------------------------------CccHHHH--
Confidence 9999999995 58999999995 44333221 0 0334444
Q ss_pred HHHhhccCCChhhhHhhcCCeEeecc-CCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhcccccccccc--
Q 004227 373 EYARGLISASGSTFFEELGLYYIGPV-DGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK-- 449 (767)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~i~~v-DGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~-- 449 (767)
|++|||+++ .| ||||+++|.++++++++. .++|++|+++|.||+|++++|+. .+|||.+.
T Consensus 201 --------------~~a~Gw~~~-~v~DG~D~~ai~~A~~~a~~~-~~~P~~I~~~T~~g~G~~~~e~~-~~~H~~~~~~ 263 (653)
T TIGR00232 201 --------------FEAYGWEVL-EVEDGHDLAAIDAAIEEAKAS-KDKPTLIEVTTTIGFGSPNKAGT-HGVHGAPLGD 263 (653)
T ss_pred --------------HHhcCCcEE-EeCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecccCcccCCC-CcccCCCCCH
Confidence 999999998 57 999999999999999862 35899999999999999988865 57898641
Q ss_pred ----------------ccCc-------------ccc--------------------------cc----C-----------
Q 004227 450 ----------------FDPK-------------TGK--------------------------QF----K----------- 459 (767)
Q Consensus 450 ----------------fd~~-------------~g~--------------------------~~----~----------- 459 (767)
|+.. .++ .. +
T Consensus 264 ~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 343 (653)
T TIGR00232 264 EDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFK 343 (653)
T ss_pred HHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhh
Confidence 1100 010 00 0
Q ss_pred CCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhh-----hhhhCCCcEEeccccHHHHHHHHHHHHh-cCCee
Q 004227 460 TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNY-----FQKRFPDRCFDVGIAEQHAVTFAAGLAS-EGVKP 533 (767)
Q Consensus 460 ~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~-----f~~~~P~R~~d~GIaE~~~vg~AaGlA~-~G~rP 533 (767)
...+..+++++|+++|.++++++|+++++++|+.+++++.. |+++||+||||+||+||+|+++|+|||+ .|++|
T Consensus 344 ~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p 423 (653)
T TIGR00232 344 AKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKP 423 (653)
T ss_pred ccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeE
Confidence 01123467889999999999999999999999998887755 8899999999999999999999999999 67999
Q ss_pred EEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh
Q 004227 534 FCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV 612 (767)
Q Consensus 534 ~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~ 612 (767)
|++||++|++|+++||+.. |++++||++++++.|+ +|+||+|||+++|+++||++||++|++|+|+.|+..++++++.
T Consensus 424 ~~~tf~~F~~r~~~~ir~~-a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~ 502 (653)
T TIGR00232 424 YGGTFLMFVDYARPAIRLA-ALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALE 502 (653)
T ss_pred EEEEhHHHHHHHHHHHHHH-HhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 9999999999999998655 9999999999998887 7999999999999999999999999999999999999999996
Q ss_pred hCCCCEEEEecCCCCcccccCCCCCCCCcccCceeEe--ecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCC
Q 004227 613 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRIL--MEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCK 690 (767)
Q Consensus 613 ~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl--~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slk 690 (767)
..++|+|||++|++.+.. .. .....+..|+ +++ ++|.|++||++|+++.+|++|++.|+++||+++|||++|++
T Consensus 503 ~~~gP~~irl~r~~~~~~--~~-~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ik 578 (653)
T TIGR00232 503 SQDGPTALILSRQNLPQL--EE-SSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFD 578 (653)
T ss_pred cCCCcEEEEEcCCccCCC--Cc-ccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCc
Confidence 678999999999874322 11 1113455665 777 67899999999999999999999999999999999999999
Q ss_pred CCcHH---HHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 691 PLDTD---LIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 691 PlD~e---~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
|||++ .+.+++++++.+||+|||+.+||.. .+ ++ .-+++|+ |+|+.+.
T Consensus 579 pld~~~~~~~~~~~~~~~~vvtvEe~~~~g~~~----~~---~~-----~~~~igv-d~fg~sg 629 (653)
T TIGR00232 579 LFDKQDEEYRESVLPANVTRLAVEAGAADEWYK----YA---GL-----VGAILGM-DSFGESA 629 (653)
T ss_pred ccccCCHHHHHHHhcccCceEEEecccHhHHHH----hc---CC-----cceEEEe-cCCcCCC
Confidence 99765 4888888888999999999877731 11 11 1157888 8898654
No 15
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=1.1e-85 Score=767.81 Aligned_cols=503 Identities=21% Similarity=0.309 Sum_probs=422.0
Q ss_pred HHHHHHHHHHHHHHhh-ccCCCCCCcccHHHHHHHHHh-hcC----CC----CcEEEeCCCChH---HHHHHHhCC---h
Q 004227 161 EQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWDVGHQA---YVHKILTGR---R 224 (767)
Q Consensus 161 ~~la~~iR~~i~~~v~-~~gGH~gsslg~vel~~aL~~-~~~----~p----~Dr~i~s~GH~~---y~~~~l~G~---~ 224 (767)
+++|++||+++++|+. .++||+|++||++|++++||. +++ +| |||||+|+||++ |+.+++.|+ .
T Consensus 5 ~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12754 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPM 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCCH
Confidence 5679999999999997 478999999999999999984 333 23 699999999999 999999997 6
Q ss_pred HHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCcccCcchH
Q 004227 225 SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAY 293 (767)
Q Consensus 225 ~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g----------~~~~Vv~viGDGal~eG~~~ 293 (767)
++|.+|||.|+ ++|||+....++..+.+|++|++++.|+|||+|.|+++ .+++|||++|||+++||++|
T Consensus 85 e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12754 85 EELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHH
Confidence 88999999997 79999987778888999999999999999999999986 37899999999999999999
Q ss_pred HHHHHHHHcCCC-EEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 004227 294 EAMNNAGFLDAN-LIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (767)
Q Consensus 294 EAln~A~~~~~n-li~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~ 372 (767)
||+++|+.+++| ||+|+|||++ ++ ||++..+. .+++.++
T Consensus 165 EA~~~A~~~kL~nLi~ivD~N~~-~i-----dg~~~~~~--------------------------------~~~~~~r-- 204 (663)
T PRK12754 165 EVCSLAGTLKLGKLIAFYDDNGI-SI-----DGHVEGWF--------------------------------TDDTAMR-- 204 (663)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCC-cc-----Ccchhhcc--------------------------------CccHHHH--
Confidence 999999999965 8999999995 22 33322110 1344555
Q ss_pred HHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhcccccccccc---
Q 004227 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK--- 449 (767)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~--- 449 (767)
|++|||+++..|||||+++|.+|+++++.. .++|++|+++|.||+|++++|+. .+|||.+.
T Consensus 205 --------------~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~~-~~~Hg~~l~~~ 268 (663)
T PRK12754 205 --------------FEAYGWHVIRGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAGT-HDSHGAPLGDA 268 (663)
T ss_pred --------------HHhcCCeEEeeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCCC-ccccCCCCCHH
Confidence 999999998448999999999999998753 47999999999999999988765 67898642
Q ss_pred ----------ccCc----------------cccc------------------------------cCC-------------
Q 004227 450 ----------FDPK----------------TGKQ------------------------------FKT------------- 460 (767)
Q Consensus 450 ----------fd~~----------------~g~~------------------------------~~~------------- 460 (767)
++.+ .+++ ++.
T Consensus 269 ~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (663)
T PRK12754 269 EIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKL 348 (663)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhhhh
Confidence 1110 0000 000
Q ss_pred --CCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcC-----hhhhhhhCCCcEEeccccHHHHHHHHHHHHh-cCCe
Q 004227 461 --KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-----LNYFQKRFPDRCFDVGIAEQHAVTFAAGLAS-EGVK 532 (767)
Q Consensus 461 --~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~g-----l~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~-~G~r 532 (767)
+.+....+++++++|.++++.+|+++++++|+.+++. ...|+++||+|||++||+||+|+++|+|||+ .|++
T Consensus 349 ~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~ 428 (663)
T PRK12754 349 QANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFL 428 (663)
T ss_pred cccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCCe
Confidence 0112466789999999999999999999999988875 5789899999999999999999999999999 6899
Q ss_pred eEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHH
Q 004227 533 PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAA 611 (767)
Q Consensus 533 P~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~ 611 (767)
||++||++|++|++|||++. |++++||++++++.|+ +|+||||||++||+++||.||||+|++|+|+.|+..+++.++
T Consensus 429 Pf~~tf~~F~~r~~~qir~~-a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~ 507 (663)
T PRK12754 429 PYTSTFLMFVEYARNAVRMA-ALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGV 507 (663)
T ss_pred EEEEeeHHHHHHHHHHHHHH-HHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHH
Confidence 99999999999999999875 9999999999999998 799999999999999999999999999999999999999999
Q ss_pred hhCCCCEEEEecCCCCcccccCCCCCCCCcccCceeEeecCC---cEEEEEechhHHHHHHHHHHHhcCCCcEEEEEccc
Q 004227 612 VIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD---RVAILGYGSIVQQCVLAANMLKSQDISVTVADARF 688 (767)
Q Consensus 612 ~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~---dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~s 688 (767)
+..++|+|||++|++.+...-.. .....+..|+ +++++|. |++||++|+++.+|++|++.|+++||+++|||++|
T Consensus 508 ~~~~gP~yirl~R~~~p~~~~~~-~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s 585 (663)
T PRK12754 508 ERQDGPTALILSRQNLAQQERTE-EQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPS 585 (663)
T ss_pred hCCCCCEEEEeCCCCCCCCCCcc-chhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCc
Confidence 86689999999998754321101 0112344454 8888864 99999999999999999999999999999999999
Q ss_pred CCCCcHH---HHHHHhccC-CEEEEEcCCCCCCHHHHH
Q 004227 689 CKPLDTD---LIRQLANEH-EILITVEEGSVGGFGSHV 722 (767)
Q Consensus 689 lkPlD~e---~i~~~~~~~-~~vVvvEe~~~GGlgs~I 722 (767)
++|||++ +.+.++... ...|++|.+...||...+
T Consensus 586 ~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~~ 623 (663)
T PRK12754 586 TDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKYV 623 (663)
T ss_pred cCcCCCCCHHHHHhcCccccccceEeecccccchhhhc
Confidence 9999986 444444433 246999998888898644
No 16
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=8.3e-82 Score=741.51 Aligned_cols=554 Identities=22% Similarity=0.267 Sum_probs=452.4
Q ss_pred ccCCCCCCCccccCCCCcccCCCCCH-HHHHHHHHHHHHHHHHHhhc-c------CCCCCCcccHHHHHHHHH-hhcCCC
Q 004227 132 DFSEEKPPTPLLDTINYPIHMKNLST-EDLEQLAAELRADIVNSVSK-T------GGHLSANLGVVELTLALH-RVFNTP 202 (767)
Q Consensus 132 ~~~~~~~~~~~l~~i~~p~~~k~~~~-~~L~~la~~iR~~i~~~v~~-~------gGH~gsslg~vel~~aL~-~~~~~p 202 (767)
... ....|||++||..-.+...-.. +-++++++.||++++.|+.+ + |||+|+++|++||+.+|| ++|+.|
T Consensus 47 ~~~-~~~~t~y~nti~~~~~~~~pgd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~ 125 (889)
T TIGR03186 47 APP-AAGATPYVNTIAVDQEPPYPGDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAA 125 (889)
T ss_pred CCC-CCCCCCCccCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCC
Confidence 443 3455899999987665543332 33467889999999999964 4 699999999999999998 445532
Q ss_pred -----CcEEEeCCCChH---HHHHHHhCC--hHHhHHHHhc--C-CCCCCCCCCC-CCCCCCCCcccchhHHHHHHHHHH
Q 004227 203 -----DDKIIWDVGHQA---YVHKILTGR--RSRMNTMRKT--S-GLAGFPKREE-SVHDAFGAGHSSTSISAGLGMAVA 268 (767)
Q Consensus 203 -----~Dr~i~s~GH~~---y~~~~l~G~--~~~l~tlr~~--g-gl~G~p~~~e-s~~~~~g~G~~G~~ls~A~G~AlA 268 (767)
+| +|+|+||.+ |+.+++.|+ +++|.+|||. + ++++||++.. +.+..|.+|++|+|++.|+|||++
T Consensus 126 ~~~~~rD-~VlskGHasp~lYA~l~l~G~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala 204 (889)
T TIGR03186 126 GDASGGD-LVYFQPHSAPGVYARAFLEGFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARF 204 (889)
T ss_pred CCCCCCC-EEEECCchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHH
Confidence 46 799999999 888999997 7899999997 4 6899888765 445789999999999999999999
Q ss_pred HHHcC-------CCCeEEEEEcCCcccCcchHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHh
Q 004227 269 RDILG-------KNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKL 340 (767)
Q Consensus 269 ~kl~g-------~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l 340 (767)
.|++. .+++|||++||||++||++|||+.+|++++ +|||+|+|+|+++ +||++..++.+
T Consensus 205 ~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~q------lDG~t~~~~~~------- 271 (889)
T TIGR03186 205 MRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQR------LDGPVRGNGRI------- 271 (889)
T ss_pred HHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCc------cCCcccccccc-------
Confidence 88543 379999999999999999999999999987 8999999999963 37776654432
Q ss_pred hhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeecc----------------------
Q 004227 341 QASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPV---------------------- 398 (767)
Q Consensus 341 ~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~v---------------------- 398 (767)
.+++.++ |++|||+++..+
T Consensus 272 -----------------------~e~l~~k----------------f~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~ 312 (889)
T TIGR03186 272 -----------------------IDELESQ----------------FAGAGWNVIKVLWGSDWDALFARDATGALARAFA 312 (889)
T ss_pred -----------------------chHHHHH----------------HHhCCCEEEEEeecCchHHhhccccchHHHHHHH
Confidence 2444544 677777766322
Q ss_pred ----------------------------------------------CCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCC
Q 004227 399 ----------------------------------------------DGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 399 ----------------------------------------------DGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+|||+++|.+|+++|++. .++|++|.++|+||+
T Consensus 313 ~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~-~~~PTvIla~TvkG~ 391 (889)
T TIGR03186 313 HTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH-EGRPTVILAKTMKGF 391 (889)
T ss_pred hcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecC
Confidence 799999999999988863 469999999999999
Q ss_pred CCChhhhccccccccccccC---------------------------cc---------------c----------c---c
Q 004227 433 GYPPAEAAADRMHGVVKFDP---------------------------KT---------------G----------K---Q 457 (767)
Q Consensus 433 G~~~ae~~~~~~Hg~~~fd~---------------------------~~---------------g----------~---~ 457 (767)
|.+.+.++.+.+|+..+++. .. + . .
T Consensus 392 G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~s~~~~~l~~~r~~l~g~~p~r~~~~~~~~~ 471 (889)
T TIGR03186 392 GMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRYLHARRAALGGYLPRRRTAATHALA 471 (889)
T ss_pred CCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCccccC
Confidence 99877766678888433211 00 0 0 0
Q ss_pred cCC-----------CCcchhHHHHHHHHHHHHHHh---CCCEEEEeccccCCcChhh-----------------------
Q 004227 458 FKT-----------KSPTLTYTQYFAESLIKEAET---DDKIVAIHAAMGGGTGLNY----------------------- 500 (767)
Q Consensus 458 ~~~-----------~~~~~s~~~af~~aL~~~~~~---d~~ivvi~aD~~gs~gl~~----------------------- 500 (767)
.+. ..++.+.+.||++.|.++++. .++||.+.+|+..++||++
T Consensus 472 ~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~ 551 (889)
T TIGR03186 472 VPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSM 551 (889)
T ss_pred CCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHH
Confidence 010 113457789999997777654 5799999999999996543
Q ss_pred --hhhhCCCcEEeccccHHHHHH--HHHHHHhc----CCeeEEeechhHH-HhHHHHHHHhhhcCCCCEEEEeecCCc--
Q 004227 501 --FQKRFPDRCFDVGIAEQHAVT--FAAGLASE----GVKPFCAIYSSFL-QRGYDQVVHDVDLQKLPVRFAMDRAGL-- 569 (767)
Q Consensus 501 --f~~~~P~R~~d~GIaE~~~vg--~AaGlA~~----G~rP~~~tys~Fl-~ra~dQi~~~~a~~~lpViiv~~~~Gl-- 569 (767)
|++.+|+|||++||+||+|++ +|+|+|++ |++||+.+|++|. +|++|||++. ++++++|++++.++|+
T Consensus 552 ~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~~~a~v~lvG~~aG~tT 630 (889)
T TIGR03186 552 LYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-ADQRARGFLIGATSGKTT 630 (889)
T ss_pred HHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hhcCCCcEEEEECCCccC
Confidence 467789999999999999999 99999998 7899999999995 8999999877 9999999999999998
Q ss_pred cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh----h-CCCCEEEEecCCCCcccccCCCCCC-CCccc
Q 004227 570 VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV----I-DDRPSCFRFPRGNGIGAVLPPNNKG-TPLEI 643 (767)
Q Consensus 570 ~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~----~-~~~P~~irl~r~~~~~~~~p~~~~~-~~~~i 643 (767)
.|.+|+|||+.+|++++|.+|||+|+.|+|+.|+..+++++++ . .++|+|||+.|.+.....+++. . ..++.
T Consensus 631 lg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p~~~~~--~~~~~~~ 708 (889)
T TIGR03186 631 LGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQPSLPED--RLDAVRR 708 (889)
T ss_pred CCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCcCCC--cccchhc
Confidence 5889999999999999999999999999999999999998765 1 3689999999986432223321 1 22444
Q ss_pred Cc--e-eEee----cCCcEEEEEechhHHHHHHHHHHHhcC-CCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCC--
Q 004227 644 GK--G-RILM----EGDRVAILGYGSIVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-- 713 (767)
Q Consensus 644 gk--~-~vl~----eG~dvtIva~Gs~v~~al~Aa~~L~~~-GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~-- 713 (767)
|+ + ++++ +|.|++|+++|.++++|++|+++|+++ ||+++|+|++|+||||++.+. +++++.++++|||
T Consensus 709 gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~ 786 (889)
T TIGR03186 709 GILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPS 786 (889)
T ss_pred chhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCccccccccc
Confidence 44 6 8888 578999999999999999999999997 999999999999999999987 6778899999998
Q ss_pred -C-CCCHHH-------------HHHHHHHhcCCCCCCceEEEEecCCccccc
Q 004227 714 -S-VGGFGS-------------HVCHFLTLSGILDGPLKVFIFSLIQKLETD 750 (767)
Q Consensus 714 -~-~GGlgs-------------~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~ 750 (767)
+ .||||+ .|+++|.+.. +.+++++|+ |.|...
T Consensus 787 ~~v~ggLg~~~~p~va~~D~~~avae~i~~~~----p~~~~~LG~-D~FG~S 833 (889)
T TIGR03186 787 PHVAQALGATQGPVIAATDYVRAVPELIRAYV----PRRYVTLGT-DGFGRS 833 (889)
T ss_pred ccHhhhhCCCCCCeeeecchHHHHHHHHHhhC----CCCEEEecc-CCCCCc
Confidence 5 699999 9999999863 458999999 999874
No 17
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=6.3e-80 Score=725.77 Aligned_cols=550 Identities=22% Similarity=0.266 Sum_probs=457.0
Q ss_pred CCCccccCCCCcccCCCCCHHHHHH-HHHHHHHHHHHHhhc-c------CCCCCCcccHHHHHHHHH-hhcCCC-----C
Q 004227 138 PPTPLLDTINYPIHMKNLSTEDLEQ-LAAELRADIVNSVSK-T------GGHLSANLGVVELTLALH-RVFNTP-----D 203 (767)
Q Consensus 138 ~~~~~l~~i~~p~~~k~~~~~~L~~-la~~iR~~i~~~v~~-~------gGH~gsslg~vel~~aL~-~~~~~p-----~ 203 (767)
..|||++||..-.+.+.-...++++ +++.||++++.||.+ + |||+++++|+++|+.+|| ++|+.| +
T Consensus 58 ~~t~y~nti~~~~~~~~pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~ 137 (891)
T PRK09405 58 ATTPYINTIPVEEEPEYPGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGG 137 (891)
T ss_pred CCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 4599999998887776666666555 589999999999963 3 499999999999999998 455542 4
Q ss_pred cEEEeCCCChH---HHHHHHhCC--hHHhHHHHhc--C-CCCCCCCCCC-CCCCCCCCcccchhHHHHHHHHHHHHH---
Q 004227 204 DKIIWDVGHQA---YVHKILTGR--RSRMNTMRKT--S-GLAGFPKREE-SVHDAFGAGHSSTSISAGLGMAVARDI--- 271 (767)
Q Consensus 204 Dr~i~s~GH~~---y~~~~l~G~--~~~l~tlr~~--g-gl~G~p~~~e-s~~~~~g~G~~G~~ls~A~G~AlA~kl--- 271 (767)
| +|+|+||.+ |+..++.|+ +++|.+|||. | +|++||++.. ++.+.|.+|++|+|++.|+|+|++.|+
T Consensus 138 D-~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~ 216 (891)
T PRK09405 138 D-LVFFQGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLEN 216 (891)
T ss_pred C-EEEECchHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccc
Confidence 6 899999999 889999997 6899999995 4 7999999865 456789999999999999999999994
Q ss_pred ----cCCCCeEEEEEcCCcccCcchHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhH
Q 004227 272 ----LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNF 346 (767)
Q Consensus 272 ----~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~ 346 (767)
++.+++|||++||||++||++|||+..|++++ +||++|+|+|+|. +||++..++.+
T Consensus 217 ~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~------lDG~v~~~~~~------------- 277 (891)
T PRK09405 217 RGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQR------LDGPVRGNGKI------------- 277 (891)
T ss_pred cccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcc------cCCcccccccc-------------
Confidence 45689999999999999999999999999987 8999999999963 37777654432
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeecc-------------------------C--
Q 004227 347 RKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPV-------------------------D-- 399 (767)
Q Consensus 347 ~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~v-------------------------D-- 399 (767)
++++..+ |+++||+++..+ |
T Consensus 278 -----------------~~~l~~~----------------f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~ 324 (891)
T PRK09405 278 -----------------IQELEGI----------------FRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGD 324 (891)
T ss_pred -----------------chhHHHH----------------HhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHH
Confidence 2455554 888888877432 3
Q ss_pred -----------------------------------------CCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCC-Chh
Q 004227 400 -----------------------------------------GHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGY-PPA 437 (767)
Q Consensus 400 -----------------------------------------Ghdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~-~~a 437 (767)
|||+++|.+|++++++. .++|++|.++|+||+|+ +..
T Consensus 325 yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~~ 403 (891)
T PRK09405 325 YQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH-KGQPTVILAKTIKGYGMGEAG 403 (891)
T ss_pred HHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC-CCCCEEEEEeceecCCCCccc
Confidence 99999999999988863 47899999999999999 554
Q ss_pred hhccccccccccccC---------------------------ccc-------------------------cc--cCC---
Q 004227 438 EAAADRMHGVVKFDP---------------------------KTG-------------------------KQ--FKT--- 460 (767)
Q Consensus 438 e~~~~~~Hg~~~fd~---------------------------~~g-------------------------~~--~~~--- 460 (767)
| +.+.+|+..+.+. +.+ .. .+.
T Consensus 404 e-~~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~ 482 (891)
T PRK09405 404 E-GKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFEPLEVPALSA 482 (891)
T ss_pred C-CCccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhh
Confidence 5 4467887522110 000 00 000
Q ss_pred --------CCcchhHHHHHHHHHHHHHHh---CCCEEEEeccccCCcCh-------------------------hhhhhh
Q 004227 461 --------KSPTLTYTQYFAESLIKEAET---DDKIVAIHAAMGGGTGL-------------------------NYFQKR 504 (767)
Q Consensus 461 --------~~~~~s~~~af~~aL~~~~~~---d~~ivvi~aD~~gs~gl-------------------------~~f~~~ 504 (767)
..++.+.+++|+++|.++++. +++||.+.+|+..++|+ ..|++.
T Consensus 483 ~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~ 562 (891)
T PRK09405 483 FEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKES 562 (891)
T ss_pred HHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHc
Confidence 013457899999999999996 89999999999998887 467889
Q ss_pred CCCcEEeccccHHHHHH--HHHHHHhc----CCeeEEeechhH-HHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCC
Q 004227 505 FPDRCFDVGIAEQHAVT--FAAGLASE----GVKPFCAIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPT 576 (767)
Q Consensus 505 ~P~R~~d~GIaE~~~vg--~AaGlA~~----G~rP~~~tys~F-l~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~T 576 (767)
||+|||++||+||+|++ +|+|+|++ |++||+.+|++| .+|++||+++++++++.+|+++++++|+ .+.+|.|
T Consensus 563 ~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~q 642 (891)
T PRK09405 563 KDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQ 642 (891)
T ss_pred CCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCccc
Confidence 99999999999999999 99999998 789999999999 6899999999999999999999999998 5889999
Q ss_pred CCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCC--CEEEEecCCCCcccccCCCCCCCCcccCce-eEee
Q 004227 577 HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDR--PSCFRFPRGNGIGAVLPPNNKGTPLEIGKG-RILM 650 (767)
Q Consensus 577 H~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~--P~~irl~r~~~~~~~~p~~~~~~~~~igk~-~vl~ 650 (767)
||..+|++++|.+||++|+.|+|+.|+..+++.+++ ...+ |.|+|+...+... |...++.++.++|+ ++++
T Consensus 643 Hqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~~---~~~pe~~~~~igKg~y~Lr 719 (891)
T PRK09405 643 HEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQ---PAMPEGAEEGILKGMYKLE 719 (891)
T ss_pred CCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCC---CCCCcccccccceEEEEec
Confidence 999999999999999999999999999999999876 1234 6778875222211 22223566889997 9999
Q ss_pred cCC------cEEEEEechhHHHHHHHHHHHhc-CCCcEEEEEcccCCCCcHHHHHHHh---------ccCCEEEEEcCCC
Q 004227 651 EGD------RVAILGYGSIVQQCVLAANMLKS-QDISVTVADARFCKPLDTDLIRQLA---------NEHEILITVEEGS 714 (767)
Q Consensus 651 eG~------dvtIva~Gs~v~~al~Aa~~L~~-~GI~v~VIdl~slkPlD~e~i~~~~---------~~~~~vVvvEe~~ 714 (767)
+|. |++|+++|.++++|++|+++|++ +||+++|+|+.|+||||.+.+.... +++..|+++|++
T Consensus 720 ~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~- 798 (891)
T PRK09405 720 TAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG- 798 (891)
T ss_pred cCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcc-
Confidence 976 89999999999999999999998 6999999999999999999987765 667788999988
Q ss_pred CCCHH-------HHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 715 VGGFG-------SHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 715 ~GGlg-------s~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
+||++ +.|++.|++.. +.+++++|+ |.|....
T Consensus 799 ~gG~~Vtv~D~~~aVae~la~~~----p~~~~~LGv-D~FG~SG 837 (891)
T PRK09405 799 AEGPVVAATDYMKLFAEQIRAFV----PGDYVVLGT-DGFGRSD 837 (891)
T ss_pred cCCcEEEecchHHHHHHHHHHhC----CCCEEEEec-CCCCCCC
Confidence 78888 89999998863 358999999 9998643
No 18
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=2.4e-78 Score=715.25 Aligned_cols=542 Identities=23% Similarity=0.281 Sum_probs=437.2
Q ss_pred CCCccccCCCCcccCCCCCHHHH-HHHHHHHHHHHHHHhhc-cC------CCCCCcccHHHHHHHHHh-hcC-C----CC
Q 004227 138 PPTPLLDTINYPIHMKNLSTEDL-EQLAAELRADIVNSVSK-TG------GHLSANLGVVELTLALHR-VFN-T----PD 203 (767)
Q Consensus 138 ~~~~~l~~i~~p~~~k~~~~~~L-~~la~~iR~~i~~~v~~-~g------GH~gsslg~vel~~aL~~-~~~-~----p~ 203 (767)
..|||++||..-.+.+--...+| +++++.||++++.||.+ +. ||+|+++|+++|+.+||. +|+ + .+
T Consensus 66 ~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~ 145 (896)
T PRK13012 66 LTTPYVNTIPVDQQPPYPGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGG 145 (896)
T ss_pred CCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 44999999987766554444444 45899999999999963 44 999999999999999984 454 1 37
Q ss_pred cEEEeCCCChH---HHHHHHhCC--hHHhHHHHhc---CCCCCCCCCCCC-CCCCCCCcccchhHHHHHHHHHHHHH---
Q 004227 204 DKIIWDVGHQA---YVHKILTGR--RSRMNTMRKT---SGLAGFPKREES-VHDAFGAGHSSTSISAGLGMAVARDI--- 271 (767)
Q Consensus 204 Dr~i~s~GH~~---y~~~~l~G~--~~~l~tlr~~---ggl~G~p~~~es-~~~~~g~G~~G~~ls~A~G~AlA~kl--- 271 (767)
| +|+|+||.+ |+..++.|+ +++|.+|||. +|+++||++... .+..|.+|++|+|++.|+|+|++.|+
T Consensus 146 D-~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~ 224 (896)
T PRK13012 146 D-LVYFQPHSAPGIYARAFLEGRLSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQH 224 (896)
T ss_pred C-EEEECcchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccc
Confidence 9 699999999 888999997 6889999998 469999998653 46889999999999999999999983
Q ss_pred ----cCCCCeEEEEEcCCcccCcchHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhH
Q 004227 272 ----LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNF 346 (767)
Q Consensus 272 ----~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~ 346 (767)
...+++|||++||||++||++|||+..|++++ +||++|+|+|++. +||++..++.+
T Consensus 225 ~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~------lDG~v~~~~~~------------- 285 (896)
T PRK13012 225 RGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQR------LDGPVRGNGRI------------- 285 (896)
T ss_pred cccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCcc------ccCcccccccc-------------
Confidence 45679999999999999999999999999987 8999999999963 37777654432
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeecc-------------------------C--
Q 004227 347 RKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPV-------------------------D-- 399 (767)
Q Consensus 347 ~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~v-------------------------D-- 399 (767)
++++..+ |+++||+++..+ |
T Consensus 286 -----------------~~~l~~~----------------f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~ 332 (896)
T PRK13012 286 -----------------IQELEAL----------------FRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQ 332 (896)
T ss_pred -----------------chHHHHH----------------HHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHH
Confidence 2556655 899999988432 8
Q ss_pred -----------------------------------------CCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhh
Q 004227 400 -----------------------------------------GHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAE 438 (767)
Q Consensus 400 -----------------------------------------Ghdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae 438 (767)
|||+++|.+|++++++. .++|++|.++|+||+|++.+.
T Consensus 333 yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~~ 411 (896)
T PRK13012 333 FQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH-KGQPTVILAKTKKGYGMGEAG 411 (896)
T ss_pred HHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCccc
Confidence 99999999999988753 468999999999999998543
Q ss_pred hcccccccccc--------------------------ccC-ccc-----------c--------------cc--C-----
Q 004227 439 AAADRMHGVVK--------------------------FDP-KTG-----------K--------------QF--K----- 459 (767)
Q Consensus 439 ~~~~~~Hg~~~--------------------------fd~-~~g-----------~--------------~~--~----- 459 (767)
++.+.+|+..+ |.. +.. + ++ +
T Consensus 412 e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~~ 491 (896)
T PRK13012 412 EGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAPPLPVPPLSAF 491 (896)
T ss_pred CCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCcccccccccCCCchhhH
Confidence 45567887321 100 000 0 00 0
Q ss_pred ------CCCcchhHHHHHHHHHHHHHHh---CCCEEEEeccccCCcChh-------------------------hhhhhC
Q 004227 460 ------TKSPTLTYTQYFAESLIKEAET---DDKIVAIHAAMGGGTGLN-------------------------YFQKRF 505 (767)
Q Consensus 460 ------~~~~~~s~~~af~~aL~~~~~~---d~~ivvi~aD~~gs~gl~-------------------------~f~~~~ 505 (767)
...+..+.+++|+++|.++++. .++||++++|+..++|++ .|++.+
T Consensus 492 ~~~~~~~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~ 571 (896)
T PRK13012 492 AQFALGAGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK 571 (896)
T ss_pred HHhhcccCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC
Confidence 0113457899999999999987 899999999999888662 355789
Q ss_pred CCcEEeccccHHHHHH--HHHHHHhc----CCeeEEeechhH-HHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCC
Q 004227 506 PDRCFDVGIAEQHAVT--FAAGLASE----GVKPFCAIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTH 577 (767)
Q Consensus 506 P~R~~d~GIaE~~~vg--~AaGlA~~----G~rP~~~tys~F-l~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH 577 (767)
|+|||++||+||+|++ +|+|+|++ |++||+.+|+.| .+|++||+++.++++..+|+++++++|+ .|++|+||
T Consensus 572 pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~TH 651 (896)
T PRK13012 572 DGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQH 651 (896)
T ss_pred CCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCC
Confidence 9999999999999999 88888777 679999999999 6899999999989999999999999997 79999999
Q ss_pred CChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhh-----CCCCEEEEecCCCCcccccCCCCCCCCcccCceeEee--
Q 004227 578 CGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI-----DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILM-- 650 (767)
Q Consensus 578 ~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~-----~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~-- 650 (767)
|+.+|++++|++||++|+.|+|+.|+..+++.++++ .+.|+|||+.|++.....+|+. ....+..|+ ++++
T Consensus 652 Q~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~-~~~~i~kG~-y~l~~~ 729 (896)
T PRK13012 652 QDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEG-AEEGILKGM-YRLAAA 729 (896)
T ss_pred cchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCcc-chhccccCc-EEEecc
Confidence 999999999999999999999999999999998843 3579999999988543334432 123344444 6673
Q ss_pred -cCCcEEEEEechhHHHHHHHHHHHhcC-CCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHH----H---
Q 004227 651 -EGDRVAILGYGSIVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFG----S--- 720 (767)
Q Consensus 651 -eG~dvtIva~Gs~v~~al~Aa~~L~~~-GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlg----s--- 720 (767)
+|.|++||++|+++++|++|+++|+++ ||+++|+|++|++|||++.+.. |+|+ .||++ +
T Consensus 730 ~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~~~sy~~ 798 (896)
T PRK13012 730 AEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEARVPYVT 798 (896)
T ss_pred CCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCccccccHHH
Confidence 467999999999999999999999999 9999999999999999997732 4443 35555 3
Q ss_pred ------------------HHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 721 ------------------HVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 721 ------------------~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
.|++.+.+.. +.+++++|+ |.|..+.
T Consensus 799 ~~l~~~~~p~Va~~D~~~aVae~l~~~~----~~~~~~LGv-D~FG~Sg 842 (896)
T PRK13012 799 QCLAGTRGPVVAATDYVRAVPEQIRAFV----PARYVTLGT-DGFGRSD 842 (896)
T ss_pred HhhcccCCCeEEecchHHHHHHHHHHhC----CCCeEEEee-CCCCCCC
Confidence 5555555532 346888998 8888643
No 19
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-78 Score=677.92 Aligned_cols=506 Identities=24% Similarity=0.361 Sum_probs=428.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHhh---c--CCC----CcEEEeCCCChH---HHHHHHhCC
Q 004227 157 TEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHRV---F--NTP----DDKIIWDVGHQA---YVHKILTGR 223 (767)
Q Consensus 157 ~~~L~~la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~~---~--~~p----~Dr~i~s~GH~~---y~~~~l~G~ 223 (767)
.+..+++++.||-..+++|++ ++||+|.+||++|+...||.. + ++| |||||+|.||.+ |++++|+|.
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 455788999999999999975 999999999999999999743 2 245 899999999999 999999998
Q ss_pred ---hHHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCcccC
Q 004227 224 ---RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTA 289 (767)
Q Consensus 224 ---~~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~----------~~~Vv~viGDGal~e 289 (767)
.++|..|||.++ .+|||+....++....+|.+|+||+.|+|||+|.|+++. |+.+||++|||+++|
T Consensus 83 ~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmE 162 (663)
T COG0021 83 DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLME 162 (663)
T ss_pred CCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhc
Confidence 488999999998 699999766778888899999999999999999988653 579999999999999
Q ss_pred cchHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHH
Q 004227 290 GQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVA 368 (767)
Q Consensus 290 G~~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~ 368 (767)
|+++||..+|++++ .|||++.|+|+ +|+ ||.+..+- .+++.
T Consensus 163 Gvs~EA~slAG~l~L~kLIvlyD~N~-Isi-----DG~~~~~f--------------------------------~ed~~ 204 (663)
T COG0021 163 GVSHEAASLAGHLKLGKLIVLYDSND-ISI-----DGDTSLSF--------------------------------TEDVA 204 (663)
T ss_pred ccHHHHHHHHhhcCCCcEEEEEeCCC-cee-----ccCccccc--------------------------------chhHH
Confidence 99999999999998 88999999998 554 65544211 25666
Q ss_pred HHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc
Q 004227 369 AKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (767)
Q Consensus 369 ~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (767)
++ ||++||+++..+||||+++|.+|+++|+.. .++|++|+|+|+.|+|.+..++ ..++||.+
T Consensus 205 ~R----------------feAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~Gsp~keg-t~~~HGap 266 (663)
T COG0021 205 KR----------------FEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKGSPNKEG-THKVHGAP 266 (663)
T ss_pred HH----------------HHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecCCCCcCC-CccccCCC
Confidence 66 999999999899999999999999999974 5799999999999999888664 47899976
Q ss_pred c-------------ccCc-----------------ccc--------------c----------------cC---------
Q 004227 449 K-------------FDPK-----------------TGK--------------Q----------------FK--------- 459 (767)
Q Consensus 449 ~-------------fd~~-----------------~g~--------------~----------------~~--------- 459 (767)
. |++. .++ + ++
T Consensus 267 Lg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~ 346 (663)
T COG0021 267 LGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPK 346 (663)
T ss_pred CCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhhh
Confidence 3 1110 110 0 00
Q ss_pred --CCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-----hhhh-hhCCCcEEeccccHHHHHHHHHHHHhcC-
Q 004227 460 --TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQ-KRFPDRCFDVGIAEQHAVTFAAGLASEG- 530 (767)
Q Consensus 460 --~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-----~~f~-~~~P~R~~d~GIaE~~~vg~AaGlA~~G- 530 (767)
.+.+....|++.+++|..+.+..|.++..+||+.+|+.+ ..|. +.|++|++++||+|++|.+++.|||++|
T Consensus 347 ~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg 426 (663)
T COG0021 347 FEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGG 426 (663)
T ss_pred hcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcC
Confidence 001124678899999999999999999999999999754 2454 6788999999999999999999999986
Q ss_pred CeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHH
Q 004227 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (767)
Q Consensus 531 ~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~ 609 (767)
++||..||..|..++..++ +.+|+|++|+++|.+|.++ +|+||||||++|+++.+|++||+.|++|||++|+..+++.
T Consensus 427 ~~pyggTFlvFsdY~r~Ai-RlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~ 505 (663)
T COG0021 427 FIPYGGTFLVFSDYARPAV-RLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWKY 505 (663)
T ss_pred ceeecceehhhHhhhhHHH-HHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHHH
Confidence 6999999999999999997 5679999999999999988 8999999999999999999999999999999999999999
Q ss_pred HHhhCCCCEEEEecCCCCcccccCCCCCCCCcccCceeEeec----CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEE
Q 004227 610 AAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME----GDRVAILGYGSIVQQCVLAANMLKSQDISVTVAD 685 (767)
Q Consensus 610 A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~e----G~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VId 685 (767)
|+.+.++|+++.++|++++.. +.. . .......+|++++ +.|++||++|+.|+.|++|++.|+++|++++||+
T Consensus 506 Al~~~~gPt~LiltRQnlp~l--~~t-~-~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS 581 (663)
T COG0021 506 ALERKDGPTALILTRQNLPVL--ERT-D-LEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVS 581 (663)
T ss_pred HHhcCCCCeEEEEecCCCCcc--CCC-c-cccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCceEEEe
Confidence 999889999999999997543 221 1 2233455799988 4799999999999999999999998899999999
Q ss_pred cccCCCCcHH---HHHHHhcc-CCEEEEEcCCCCCCHHHHHH
Q 004227 686 ARFCKPLDTD---LIRQLANE-HEILITVEEGSVGGFGSHVC 723 (767)
Q Consensus 686 l~slkPlD~e---~i~~~~~~-~~~vVvvEe~~~GGlgs~I~ 723 (767)
++|...|+.+ +-++++.. ....|.||.+.+.||...+.
T Consensus 582 ~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g 623 (663)
T COG0021 582 MPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVG 623 (663)
T ss_pred ccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhcC
Confidence 9999998764 44455544 34579999999999996543
No 20
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=9.5e-72 Score=573.25 Aligned_cols=270 Identities=61% Similarity=0.975 Sum_probs=198.1
Q ss_pred ccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhC
Q 004227 143 LDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTG 222 (767)
Q Consensus 143 l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G 222 (767)
|++|+.|.|+|+|+.+||++||.|||+.+++.++++|||++|+||+|||++|||++||.|+|+||||+|||||+||+|||
T Consensus 1 L~~I~~p~dlk~ls~~eL~~La~eiR~~ii~~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 1 LDKINSPEDLKKLSIEELEQLAQEIREFIIETVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp GGG-SSHHHHTTS-GGGHHHHHHHHHHHHHHHCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred CCCCCCHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHc
Q 004227 223 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL 302 (767)
Q Consensus 223 ~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~ 302 (767)
|++.|.|+||.||++|||+|.||+||.|++||+|++||+|+|||.|+++++++++||+|||||+|+.||+|||||+|+..
T Consensus 81 R~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~ 160 (270)
T PF13292_consen 81 RRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHL 160 (270)
T ss_dssp TCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHH
T ss_pred cHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCC
Q 004227 303 DANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISAS 382 (767)
Q Consensus 303 ~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~ 382 (767)
+.|+++|+|||+| | ..++||+++++|++++.++.|+.+|+.+|.+.+.+ ..+.+.+.|+++.++++ .+
T Consensus 161 ~~~liVILNDN~m-S--------Is~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~~- 228 (270)
T PF13292_consen 161 KSNLIVILNDNEM-S--------ISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-SP- 228 (270)
T ss_dssp T-SEEEEEEE-SB-S--------SSB--SSHCCC----------------------------------------------
T ss_pred CCCEEEEEeCCCc-c--------cCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-hH-
Confidence 9999999999997 3 35789999999999999999999999999998877 66778888888888888 32
Q ss_pred hhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEe
Q 004227 383 GSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 383 ~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T 428 (767)
.+||++||.|+||+||||+++|.++|+++|+ -++|++|||.|
T Consensus 229 --~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~--~~gPvllHV~T 270 (270)
T PF13292_consen 229 --NLFEELGFDYIGPIDGHDLEELIEVLENAKD--IDGPVLLHVIT 270 (270)
T ss_dssp --CCCHHCT-EEEEEEETT-HHHHHHHHHHHCC--SSSEEEEEEE-
T ss_pred --HHHHHcCCeEEeccCCCCHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 8899999999999999999999999999998 48999999987
No 21
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-63 Score=510.38 Aligned_cols=285 Identities=33% Similarity=0.537 Sum_probs=269.2
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHH
Q 004227 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQ 543 (767)
Q Consensus 464 ~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ 543 (767)
..+++++|+++|.++.++|++||++++|+.+|+.+..|.++||+||||+||+||.|+|+|+|+|++|++||+++|+.|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -hHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEE
Q 004227 544 -RGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFR 621 (767)
Q Consensus 544 -ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~ir 621 (767)
|+||||++++|++++||+++++++|+ .|+||+|||..||+++||.+||+.|++|+|+.+++.++.++.+ .++|+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~-~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-cCCCEEEE
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999976 78999999
Q ss_pred ecCCCCcccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh
Q 004227 622 FPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA 701 (767)
Q Consensus 622 l~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~ 701 (767)
+.|.+.+.. +++ .++.|++||++++|+|+|++||++|.|+.++++||+.|+++||+++|||+.++||+|++.+.+.+
T Consensus 165 l~R~~~p~~-~~~--~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A 241 (312)
T COG3958 165 LGRGKVPVV-VDE--GGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAA 241 (312)
T ss_pred ecCCCCCce-ecC--CCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHH
Confidence 999764332 222 25889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccccccc
Q 004227 702 NEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCRLLSF 756 (767)
Q Consensus 702 ~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~~~~~ 756 (767)
+++++|||+|||+ .||+|+.|++.+++++ +.+++++|+||+|......+.+
T Consensus 242 ~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~L 293 (312)
T COG3958 242 RETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADEL 293 (312)
T ss_pred hhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHH
Confidence 9999999999998 5999999999999997 4789999999999988877654
No 22
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=2.2e-58 Score=536.88 Aligned_cols=501 Identities=22% Similarity=0.278 Sum_probs=393.3
Q ss_pred CCCccccCCCCcccCCCCCHHHHHH-HHHHHHHHHHHHhhc-c------CCCCCCcccHHHHHHHHHh-hcCC-C----C
Q 004227 138 PPTPLLDTINYPIHMKNLSTEDLEQ-LAAELRADIVNSVSK-T------GGHLSANLGVVELTLALHR-VFNT-P----D 203 (767)
Q Consensus 138 ~~~~~l~~i~~p~~~k~~~~~~L~~-la~~iR~~i~~~v~~-~------gGH~gsslg~vel~~aL~~-~~~~-p----~ 203 (767)
..|||++||..-.+.+.-...++++ +++.||++++.|+.+ + +||+|+++|+++|+.+||. +|+. | +
T Consensus 52 ~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~r 131 (885)
T TIGR00759 52 TTTDYINTIPVEEQPAYPGDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGG 131 (885)
T ss_pred CCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 4599999998777766555555554 569999999999964 5 7999999999999999984 4542 2 6
Q ss_pred cEEEeCCCChH---HHHHHHhCC--hHHhHHHHh---cCCCCCCCCCCC-CCCCCCCCcccchhHHHHHHHHHHHHH---
Q 004227 204 DKIIWDVGHQA---YVHKILTGR--RSRMNTMRK---TSGLAGFPKREE-SVHDAFGAGHSSTSISAGLGMAVARDI--- 271 (767)
Q Consensus 204 Dr~i~s~GH~~---y~~~~l~G~--~~~l~tlr~---~ggl~G~p~~~e-s~~~~~g~G~~G~~ls~A~G~AlA~kl--- 271 (767)
| +|+|+||.+ |+.+++.|+ +++|.+||| .++|++||++.. +.+..|.+|++|+|++.|+|+|++.|+
T Consensus 132 D-~VlSKGHasp~lYA~L~l~G~ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~ 210 (885)
T TIGR00759 132 D-LVFFQGHAAPGIYARAFLEGRLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLEN 210 (885)
T ss_pred C-EEEECCcHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHh
Confidence 8 599999999 888999997 688999999 457999999865 345789999999999999999999997
Q ss_pred ----cCCCCeEEEEEcCCcccCcchHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhH
Q 004227 272 ----LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNF 346 (767)
Q Consensus 272 ----~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~ 346 (767)
++.+++|||++||||++||++|||+..|++++ +||++|+|+|+++ .||++..++.+.
T Consensus 211 rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~q------lDG~v~~~~~i~------------ 272 (885)
T TIGR00759 211 RGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQR------LDGPVRGNGKII------------ 272 (885)
T ss_pred hccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCc------cCCccccccccc------------
Confidence 56789999999999999999999999999987 8999999999963 377777555432
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeec-----------------------------
Q 004227 347 RKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGP----------------------------- 397 (767)
Q Consensus 347 ~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~----------------------------- 397 (767)
+++..+ |+++||+++..
T Consensus 273 ------------------e~le~~----------------F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~ 318 (885)
T TIGR00759 273 ------------------QELESL----------------FRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGD 318 (885)
T ss_pred ------------------hhHHHH----------------HHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHH
Confidence 333333 55555555532
Q ss_pred ---------------------------------------cCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhh
Q 004227 398 ---------------------------------------VDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAE 438 (767)
Q Consensus 398 ---------------------------------------vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae 438 (767)
.+|||+++|.+|++++++. .++|++|.++|+||+|++...
T Consensus 319 yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~-~grPTvIlA~TvKG~G~~~~~ 397 (885)
T TIGR00759 319 YQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH-KGQPTVILAKTIKGYGMGDAA 397 (885)
T ss_pred HHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC-CCCCEEEEEeeeecCCCChhh
Confidence 2799999999999888763 468999999999999999544
Q ss_pred hccccccccccccC---------------------------ccc-------------------------cc--cC-----
Q 004227 439 AAADRMHGVVKFDP---------------------------KTG-------------------------KQ--FK----- 459 (767)
Q Consensus 439 ~~~~~~Hg~~~fd~---------------------------~~g-------------------------~~--~~----- 459 (767)
++.+.+|+..+.+. +.+ .. .|
T Consensus 398 e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~y~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~ 477 (885)
T TIGR00759 398 ESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVRYLLARRQALGGYLPARRTFAEHLTVPALEFF 477 (885)
T ss_pred CCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCchhh
Confidence 45578997432110 000 00 00
Q ss_pred ------CCCcchhHHHHHHHHHHHHHHhC---CCEEEEeccccCCcChhhhhhh-------------------------C
Q 004227 460 ------TKSPTLTYTQYFAESLIKEAETD---DKIVAIHAAMGGGTGLNYFQKR-------------------------F 505 (767)
Q Consensus 460 ------~~~~~~s~~~af~~aL~~~~~~d---~~ivvi~aD~~gs~gl~~f~~~-------------------------~ 505 (767)
...++.|.+.+|.+.|.++++.. ++||.+.+|...++||+++-.+ -
T Consensus 478 ~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~ 557 (885)
T TIGR00759 478 GALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESK 557 (885)
T ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccCCCCccCCccchhhhhhcccCC
Confidence 00145788999999999998763 5899999999999998765332 1
Q ss_pred CCcEEeccccHHHHHHH--HHHHHhc--C--CeeEEeechhH-HHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCC
Q 004227 506 PDRCFDVGIAEQHAVTF--AAGLASE--G--VKPFCAIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT 576 (767)
Q Consensus 506 P~R~~d~GIaE~~~vg~--AaGlA~~--G--~rP~~~tys~F-l~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~T 576 (767)
.+|+++.||+|.++++. |+|.|.. | +.||...|+.| .||.-|.+ +.++.|...-.+++..+|. ....|-+
T Consensus 558 ~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~-waa~d~~argfl~g~taGrtTL~gEGlq 636 (885)
T TIGR00759 558 DGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLC-WAAADQRARGFLLGATAGRTTLNGEGLQ 636 (885)
T ss_pred CCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHH-HHHhhhcCCceEeccCCCcccCCCcccc
Confidence 48999999999999985 6676664 6 78999999999 99999986 7889999999999988887 3557899
Q ss_pred CCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCC--CCcccccCCCCCCCCccc-CceeEee
Q 004227 577 HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG--NGIGAVLPPNNKGTPLEI-GKGRILM 650 (767)
Q Consensus 577 H~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~--~~~~~~~p~~~~~~~~~i-gk~~vl~ 650 (767)
||......+...+||++-|.|+.+.|+..++...+++ ....++++++-- +......| ++..-.+ ...|.++
T Consensus 637 Hqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp~~p---~~~~egIlkG~Y~l~ 713 (885)
T TIGR00759 637 HEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQPPMP---EGAEEGILKGLYRFE 713 (885)
T ss_pred CccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCCCCC---cchHHhHHhCceecc
Confidence 9988777777889999999999999999999999874 334678887753 22221222 2211112 2346666
Q ss_pred cC------CcEEEEEechhHHHHHHHHHHHhcC-CCcEEEEEcccCCCCcHHH
Q 004227 651 EG------DRVAILGYGSIVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDL 696 (767)
Q Consensus 651 eG------~dvtIva~Gs~v~~al~Aa~~L~~~-GI~v~VIdl~slkPlD~e~ 696 (767)
++ .+|.|+++|+.++++++|+++|+++ |+.++|++++|..-|..+.
T Consensus 714 ~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~ 766 (885)
T TIGR00759 714 TSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDG 766 (885)
T ss_pred cCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhH
Confidence 52 4799999999999999999999986 9999999999988877663
No 23
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=6.2e-55 Score=474.03 Aligned_cols=282 Identities=19% Similarity=0.280 Sum_probs=247.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCEEEEeccccCCcC----hhhhhhhCCC-cEEeccccHHHHHHHHHHHHhcCCeeEEee-c
Q 004227 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRFPD-RCFDVGIAEQHAVTFAAGLASEGVKPFCAI-Y 538 (767)
Q Consensus 465 ~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~g----l~~f~~~~P~-R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t-y 538 (767)
.+++++|+++|.+++++||+++++++|++.++| +++|+++||+ ||||+||+||+|+|+|+|||++|+|||+++ |
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~ 83 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMN 83 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 588999999999999999999999999975555 6899999999 999999999999999999999999999986 6
Q ss_pred hhHHHhHHHHHHHhhhcC--------CCCEEEEeecCCccC-CCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHH
Q 004227 539 SSFLQRGYDQVVHDVDLQ--------KLPVRFAMDRAGLVG-ADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (767)
Q Consensus 539 s~Fl~ra~dQi~~~~a~~--------~lpViiv~~~~Gl~G-~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~ 609 (767)
+.|++|+||||++++|++ ++||+++ ++|+.| .+|+|||+..+ ++||++|||+|++|+|+.|++.++++
T Consensus 84 ~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~~ 160 (327)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLKS 160 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 678899999999999987 4555554 566544 69999966665 99999999999999999999999999
Q ss_pred HHhhCCCCEEEEecCCCCc-ccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEccc
Q 004227 610 AAVIDDRPSCFRFPRGNGI-GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARF 688 (767)
Q Consensus 610 A~~~~~~P~~irl~r~~~~-~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~s 688 (767)
+++ .++|+|||+++.... ...+++ +.+.+++||+.++++|+|++||++|.++++|++|++.|+++||+++|||++|
T Consensus 161 a~~-~~~Pv~ire~~~l~~~~~~v~~--~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 237 (327)
T CHL00144 161 AIR-SNNPVIFFEHVLLYNLKEEIPD--NEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLIS 237 (327)
T ss_pred HHh-CCCcEEEEEcHHhcCCCCCCCC--CCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 986 689999996543211 112332 3467889999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 689 CKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 689 lkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
+||||+++|.++++++++|||+|||+ .||||++|++++.+++|...+.+++++++||.|+++.+
T Consensus 238 ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~ 302 (327)
T CHL00144 238 LKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNG 302 (327)
T ss_pred CCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCc
Confidence 99999999999999999999999998 69999999999999986222358999999999998654
No 24
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=9.4e-54 Score=469.14 Aligned_cols=287 Identities=23% Similarity=0.329 Sum_probs=249.9
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEeccccCCcC----hhhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCeeEEeec
Q 004227 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIY 538 (767)
Q Consensus 464 ~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~g----l~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~ty 538 (767)
..+++++|+++|.+++++|++++++++|++.+.+ +++|.++| |+||||+||+||+|+|+|+|+|++|+|||++++
T Consensus 26 ~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~ 105 (356)
T PLN02683 26 EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFM 105 (356)
T ss_pred ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4689999999999999999999999999976555 45677776 999999999999999999999999999999984
Q ss_pred -hhHHHhHHHHHHHhhhcCC--------CCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHH
Q 004227 539 -SSFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (767)
Q Consensus 539 -s~Fl~ra~dQi~~~~a~~~--------lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~ 609 (767)
+.|++|+||||++++|+++ +||++++.+++..| +|+|||+.+ +++||++|||+|++|+|+.|++.++++
T Consensus 106 ~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~ 183 (356)
T PLN02683 106 TFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAG-VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLKA 183 (356)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCC-CCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 7789999999999999887 99999998844355 699999887 599999999999999999999999999
Q ss_pred HHhhCCCCEEEEecCCCCccc-ccCC--CCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEc
Q 004227 610 AAVIDDRPSCFRFPRGNGIGA-VLPP--NNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADA 686 (767)
Q Consensus 610 A~~~~~~P~~irl~r~~~~~~-~~p~--~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl 686 (767)
+++ +++|++||+++...... +... ...++.+++|+++++++|+|++||++|+++.+|++|++.|+++||+++|||+
T Consensus 184 a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~ 262 (356)
T PLN02683 184 AIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVINL 262 (356)
T ss_pred HHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 986 67899999754321110 0111 0113567899999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccccc
Q 004227 687 RFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCRL 753 (767)
Q Consensus 687 ~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~~ 753 (767)
+|+||||+++|.++++++++|||+|||+ .||||++|++++.+++|...+.+++++|+||.+++....
T Consensus 263 ~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~ 330 (356)
T PLN02683 263 RSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAAN 330 (356)
T ss_pred CCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHH
Confidence 9999999999999999999999999998 699999999999999863223589999999987776543
No 25
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=5.3e-53 Score=459.42 Aligned_cols=282 Identities=25% Similarity=0.345 Sum_probs=250.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCEEEEeccccCCcC----hhhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCeeEEeech
Q 004227 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYS 539 (767)
Q Consensus 465 ~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~g----l~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys 539 (767)
.+|+++|+++|.+++++|++++++++|++.++| +++|+++| |+||||+||+||+|+++|+|||++|+|||+++|+
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~~ 83 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFMT 83 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEeeh
Confidence 589999999999999999999999999987666 38999999 9999999999999999999999999999999987
Q ss_pred -hHHHhHHHHHHHhhhcCC--------CCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHH
Q 004227 540 -SFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (767)
Q Consensus 540 -~Fl~ra~dQi~~~~a~~~--------lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A 610 (767)
.|++|+||||++++|+++ +|+++++.+ |..+.+|+|||+..+ ++||++|||+|++|+|+.|++.+++++
T Consensus 84 ~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~a 161 (327)
T PRK09212 84 FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKTA 161 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 788999999999999884 566665543 446789999977777 999999999999999999999999999
Q ss_pred HhhCCCCEEEEecCCCCccc-ccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccC
Q 004227 611 AVIDDRPSCFRFPRGNGIGA-VLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFC 689 (767)
Q Consensus 611 ~~~~~~P~~irl~r~~~~~~-~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~sl 689 (767)
++ +++|++|++++...... +++. +.+++++||++++++|+|++||+||+++..|++|++.|+++|++++|||++++
T Consensus 162 ~~-~~~Pv~i~~~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l 238 (327)
T PRK09212 162 IR-DPNPVIFLENEILYGHSHEVPE--EEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTL 238 (327)
T ss_pred Hh-CCCcEEEEEchhhcCCCCCCCC--CCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 86 58999998866432211 1222 24568899999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 690 KPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 690 kPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
+|||++.+.++++++++|||+|||+ .||||++|++++.++++.+.+.++++++.+|.|.+..
T Consensus 239 ~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~ 301 (327)
T PRK09212 239 RPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA 301 (327)
T ss_pred CCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch
Confidence 9999999999999999999999998 7999999999999987643345799999999998754
No 26
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-52 Score=460.27 Aligned_cols=288 Identities=24% Similarity=0.369 Sum_probs=250.6
Q ss_pred CcchhHHHHHHHHHHHHHHhCCCEEEEecccc---CCc-ChhhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCeeEEe
Q 004227 462 SPTLTYTQYFAESLIKEAETDDKIVAIHAAMG---GGT-GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA 536 (767)
Q Consensus 462 ~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~---gs~-gl~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~ 536 (767)
....+|+++|+++|.+++++||+++++++|++ +.. .+++|+++| |+||||+||+||+|+++|+|||++|++||++
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 34578999999999999999999999999987 212 268999999 9999999999999999999999999999999
Q ss_pred e-chhHHHhHHHHHHHhhhcC--------CCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHH
Q 004227 537 I-YSSFLQRGYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMV 607 (767)
Q Consensus 537 t-ys~Fl~ra~dQi~~~~a~~--------~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l 607 (767)
+ |++|++|++|||++++|++ ++|++++. .+|..|.+|+||++..+ ++||++|||+|++|+|+.|++.++
T Consensus 112 ~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~-~~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~l 189 (355)
T PTZ00182 112 FMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRG-PNGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGLL 189 (355)
T ss_pred echhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEe-CCCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHHH
Confidence 8 8999999999999999986 45565553 33447899999977766 999999999999999999999999
Q ss_pred HHHHhhCCCCEEEEecCCCCcccccCC-CCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEc
Q 004227 608 ATAAVIDDRPSCFRFPRGNGIGAVLPP-NNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADA 686 (767)
Q Consensus 608 ~~A~~~~~~P~~irl~r~~~~~~~~p~-~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl 686 (767)
+++++ +++|+||++|+..... ..+. ....+.+++||++++++|+|++||++|+++.+|++|++.|+++|++++|||+
T Consensus 190 ~~a~~-~~~P~~i~~p~~l~r~-~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~ 267 (355)
T PTZ00182 190 KAAIR-DPNPVVFFEPKLLYRE-SVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDL 267 (355)
T ss_pred HHHHh-CCCcEEEEeehHHhCC-CCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99987 5899999887653211 1111 1124667899999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccccc
Q 004227 687 RFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCRL 753 (767)
Q Consensus 687 ~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~~ 753 (767)
++++|||++.|.+.+++++.|||+|||+ .||||++|++++.++++..-+.+++++|+||.|+|+.+.
T Consensus 268 ~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~ 335 (355)
T PTZ00182 268 RSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKN 335 (355)
T ss_pred eeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChH
Confidence 9999999999999999999999999998 699999999999998752113578999999999988754
No 27
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=3.2e-52 Score=469.23 Aligned_cols=284 Identities=21% Similarity=0.260 Sum_probs=251.5
Q ss_pred cchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcC----hhhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCeeEEee
Q 004227 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (767)
Q Consensus 463 ~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~g----l~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t 537 (767)
...+++++|+++|.+++++|++++++++|++.+.| ..+|.++| |+||||+||+||+++|+|+|||++|+|||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 34689999999999999999999999999986666 47899999 99999999999999999999999999999998
Q ss_pred c-hhHHHhHHHHHHHhhh--------cCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHH
Q 004227 538 Y-SSFLQRGYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (767)
Q Consensus 538 y-s~Fl~ra~dQi~~~~a--------~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~ 608 (767)
+ +.|++|+||||+|++| ++++||+|++.++|..+ .|+ ||+.+|+++||++|||+|++|+|+.|++.+++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~ 297 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLK 297 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHH
Confidence 5 6788999999999999 89999999988777544 677 99999999999999999999999999999999
Q ss_pred HHHhhCCCCEEEEecCCCCcc-cccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcc
Q 004227 609 TAAVIDDRPSCFRFPRGNGIG-AVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (767)
Q Consensus 609 ~A~~~~~~P~~irl~r~~~~~-~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~ 687 (767)
++++ +++|+||++++..... ..+|.. +++.+++||++++|+|+|++||++|.++.+|++|++.|+++||+++|||++
T Consensus 298 ~ai~-~~~Pv~ile~~~ry~~~~~vp~~-~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~ 375 (464)
T PRK11892 298 AAIR-DPNPVIFLENEILYGQSFDVPKL-DDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLR 375 (464)
T ss_pred HHhh-CCCcEEEEechhhcCCCCCCCCc-CCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9986 6789999543221110 013321 246778999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccc
Q 004227 688 FCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETD 750 (767)
Q Consensus 688 slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~ 750 (767)
|+||||.++|.++++++++|||+|||+ .||||++|++++.+++|...+.++++++++|.|.+.
T Consensus 376 tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~ 439 (464)
T PRK11892 376 TIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPY 439 (464)
T ss_pred CCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCc
Confidence 999999999999999999999999998 699999999999999863224578999999999863
No 28
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.1e-48 Score=401.37 Aligned_cols=289 Identities=24% Similarity=0.416 Sum_probs=253.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCEEEEecccc---CCcCh-hhhhhhCC-CcEEeccccHHHHHHHHHHHHhcCCeeEEee-c
Q 004227 465 LTYTQYFAESLIKEAETDDKIVAIHAAMG---GGTGL-NYFQKRFP-DRCFDVGIAEQHAVTFAAGLASEGVKPFCAI-Y 538 (767)
Q Consensus 465 ~s~~~af~~aL~~~~~~d~~ivvi~aD~~---gs~gl-~~f~~~~P-~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t-y 538 (767)
.++++|++++|.++|++|++|+++++|++ |.++. .+++++|+ +|++|++|+|.+++|+|.|+|+.|+||++++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 47899999999999999999999999986 33343 68999996 5999999999999999999999999999998 9
Q ss_pred hhHHHhHHHHHHHhhhc--------CCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHH
Q 004227 539 SSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (767)
Q Consensus 539 s~Fl~ra~dQi~~~~a~--------~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A 610 (767)
.+|+..++|||+|++++ ..+|+++++..+|..+ .|.+|++..+ +++.++||++|+.|+++.|++++++.|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~-~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIG-GGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCC-chhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999885 4789999987665333 5788888877 799999999999999999999999999
Q ss_pred HhhCCCCEEEEecCCCCcc---cccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcc
Q 004227 611 AVIDDRPSCFRFPRGNGIG---AVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (767)
Q Consensus 611 ~~~~~~P~~irl~r~~~~~---~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~ 687 (767)
++ +++||+|.+++.. ++ .++|+ .+|.+++||+.+.|+|+|+|||+||.|++.+++||++|+++||+++|||+|
T Consensus 160 Ir-d~dPViflE~k~l-Y~~~~~eVP~--~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLR 235 (324)
T COG0022 160 IR-DPDPVIFLEHKRL-YRSFKGEVPE--EDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLR 235 (324)
T ss_pred hc-CCCCEEEEecHHH-hcccccCCCC--CCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEecc
Confidence 86 8899999998753 33 45674 568899999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccc---ccccccccCcc
Q 004227 688 FCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLE---TDCRLLSFPSP 759 (767)
Q Consensus 688 slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~---~~~~~~~~~~~ 759 (767)
|++|+|.|+|.++++|++++|+|||.. ++|+|++|++.+.+++|.+-..++.|++-+|... +..+.+.||.+
T Consensus 236 Tl~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~ 311 (324)
T COG0022 236 TLSPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNP 311 (324)
T ss_pred ccCccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCH
Confidence 999999999999999998888888876 7999999999999998743335578898888654 55666677753
No 29
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=1.9e-45 Score=429.57 Aligned_cols=466 Identities=17% Similarity=0.200 Sum_probs=344.4
Q ss_pred CCCCCCcccHHHHHHHHHhhcCC-CCc-EEEeCCCChH---HHHHHHhC-----C------hHHhH-HHHhcC---CCCC
Q 004227 179 GGHLSANLGVVELTLALHRVFNT-PDD-KIIWDVGHQA---YVHKILTG-----R------RSRMN-TMRKTS---GLAG 238 (767)
Q Consensus 179 gGH~gsslg~vel~~aL~~~~~~-p~D-r~i~s~GH~~---y~~~~l~G-----~------~~~l~-tlr~~g---gl~G 238 (767)
-||+|++-|...+.++|.++-+. ..| .+|++.||.+ |+..+|.| + .+.|. .|||.+ |++|
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~~s 128 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGIPS 128 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCcCC
Confidence 59999999999999999876543 335 5789999999 88889999 2 13377 578875 6889
Q ss_pred CCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcc---hHHHHHHHHHcC-CCEEEEEECCC
Q 004227 239 FPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQ---AYEAMNNAGFLD-ANLIVVLNDNK 314 (767)
Q Consensus 239 ~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~---~~EAln~A~~~~-~nli~Iv~dN~ 314 (767)
||.+ +.++....+|.+|++++.|+|+|+. +++.+|+|++||||.++|. .|++.++++..+ .||+.|+++|+
T Consensus 129 H~~~-~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng 203 (785)
T PRK05261 129 HAAP-ETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNG 203 (785)
T ss_pred CCCC-CCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecC
Confidence 9985 5677778899999999999999964 5788999999999999998 499999888665 99999999999
Q ss_pred C-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCe
Q 004227 315 Q-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (767)
Q Consensus 315 ~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (767)
+ ++.||.... . ..+++.++ |++|||.
T Consensus 204 ~~Is~pt~~~~--~-----------------------------------~~e~l~~r----------------f~g~Gw~ 230 (785)
T PRK05261 204 YKIANPTILAR--I-----------------------------------SDEELEAL----------------FRGYGYE 230 (785)
T ss_pred CcCCCCccccc--c-----------------------------------CcHhHHHH----------------HHHCCCe
Confidence 5 554443210 0 12455655 9999999
Q ss_pred EeeccCCCCHHHHHHH--------HH-------HhHcC-CCCCcE--EEEEEecCCCCCCh------hhhcccccccccc
Q 004227 394 YIGPVDGHNVEDLVTI--------FQ-------RVKEM-PAPGPV--LIHVVTEKGKGYPP------AEAAADRMHGVVK 449 (767)
Q Consensus 394 ~i~~vDGhdi~~l~~a--------l~-------~a~~~-~~~~P~--lI~v~T~KG~G~~~------ae~~~~~~Hg~~~ 449 (767)
.+ .|||||++++.++ ++ +|+.. ...+|+ +|+++|.||+|-|. .| +..+.|+++.
T Consensus 231 ~i-~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~e-Gs~raHqvPL 308 (785)
T PRK05261 231 PY-FVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIE-GSWRAHQVPL 308 (785)
T ss_pred eE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccC-CCchhhcCCC
Confidence 88 7899999887766 44 34321 115899 99999999999552 33 3357788763
Q ss_pred -------------------------ccCc------------ccc------------c-cC----CC-------------C
Q 004227 450 -------------------------FDPK------------TGK------------Q-FK----TK-------------S 462 (767)
Q Consensus 450 -------------------------fd~~------------~g~------------~-~~----~~-------------~ 462 (767)
|+.. +|+ . .+ +. .
T Consensus 309 ~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~ 388 (785)
T PRK05261 309 ANVRDNPEHLDLLEDWLRSYRPEELFDEDGRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAV 388 (785)
T ss_pred CCcccCHHHHHHHHHHhhcCChhhhcCCCCchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCcc
Confidence 1110 000 0 00 00 0
Q ss_pred cchhHHHHHHHHHHHHHHhCCC-EEEEeccccCCcChhhhhh-----------------hCCCcEEeccccHHHHHHHHH
Q 004227 463 PTLTYTQYFAESLIKEAETDDK-IVAIHAAMGGGTGLNYFQK-----------------RFPDRCFDVGIAEQHAVTFAA 524 (767)
Q Consensus 463 ~~~s~~~af~~aL~~~~~~d~~-ivvi~aD~~gs~gl~~f~~-----------------~~P~R~~d~GIaE~~~vg~Aa 524 (767)
....++. +++.|.++++.+|+ ++++++|...|+++....+ ..-+|+++ +++|++|.|++.
T Consensus 389 ~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~ 466 (785)
T PRK05261 389 MAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLE 466 (785)
T ss_pred ccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHH
Confidence 0113344 89999999999998 8999999999888743221 12389999 999999999999
Q ss_pred HHHhcCCeeEEeechhHH---HhHHHHH----HHhhh---cCCCC-EEEEeecCCc-cCCCCCCCCC---hhHHHHhhcC
Q 004227 525 GLASEGVKPFCAIYSSFL---QRGYDQV----VHDVD---LQKLP-VRFAMDRAGL-VGADGPTHCG---AFDVTFMSCL 589 (767)
Q Consensus 525 GlA~~G~rP~~~tys~Fl---~ra~dQi----~~~~a---~~~lp-Viiv~~~~Gl-~G~dG~TH~~---~~Dla~lr~i 589 (767)
|+++.|.++++++|..|+ ..++.|+ +.... ...++ +.++.++... .|+||+|||+ ++.++-++.
T Consensus 467 Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~- 545 (785)
T PRK05261 467 GYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP- 545 (785)
T ss_pred HHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC-
Confidence 999999999999999998 6777776 21100 01122 3355666665 7999999999 999999988
Q ss_pred CCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEecCCCCcccccCCCCCCCCcccCceeEee--c-----CCcEEEEEech
Q 004227 590 PNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILM--E-----GDRVAILGYGS 662 (767)
Q Consensus 590 Pg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~--e-----G~dvtIva~Gs 662 (767)
|+++||.|+|++|+..+++.|++..++|++|.++|++++... ........+.- .++++. + +.|++|+|+|+
T Consensus 546 ~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~~-~~~~a~~~~~k-Gayi~~~a~~~~~~~pDvvL~atGs 623 (785)
T PRK05261 546 DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQWL-SMDEARKHCTK-GLGIWDWASNDDGEEPDVVLACAGD 623 (785)
T ss_pred CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCcccC-ChHHHHHhccC-ceEEEEeccCCCCCCCCEEEEEeCc
Confidence 999999999999999999999998889999999999865321 11000011222 235665 2 35999999999
Q ss_pred hHHH-HHHHHHHHhcC--CCcEEEEEcccC---CC-------CcHHHHHHHhccCCEEEE
Q 004227 663 IVQQ-CVLAANMLKSQ--DISVTVADARFC---KP-------LDTDLIRQLANEHEILIT 709 (767)
Q Consensus 663 ~v~~-al~Aa~~L~~~--GI~v~VIdl~sl---kP-------lD~e~i~~~~~~~~~vVv 709 (767)
++.. |++|+++|+++ |++++||++.-+ .| ++.+.+.++....+.||+
T Consensus 624 ev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif 683 (785)
T PRK05261 624 VPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIF 683 (785)
T ss_pred HhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccCCCCCCHHHHHHhCCCCCcEEE
Confidence 9988 99999999999 999999998421 11 444556666555444443
No 30
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-46 Score=370.38 Aligned_cols=222 Identities=32% Similarity=0.544 Sum_probs=197.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh-ccCCCCCCcccHHHHHHHHHhh-cC----CC----CcEEEeCCCChH---HHHHHHh
Q 004227 155 LSTEDLEQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHRV-FN----TP----DDKIIWDVGHQA---YVHKILT 221 (767)
Q Consensus 155 ~~~~~L~~la~~iR~~i~~~v~-~~gGH~gsslg~vel~~aL~~~-~~----~p----~Dr~i~s~GH~~---y~~~~l~ 221 (767)
+++.+|+++|.+||+.+++|+. ...||+|+|||++||+++||+. ++ +| |||||+||||++ |+.++..
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 5788999999999999999996 5678999999999999999864 32 22 799999999999 7888889
Q ss_pred CC--hHHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHH
Q 004227 222 GR--RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNN 298 (767)
Q Consensus 222 G~--~~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~ 298 (767)
|. +++|.+|++.++ |+|||.+..+++....+|++|++||+|+|||++.|+++.+++||+++||||++||++|||+..
T Consensus 85 G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~ 164 (243)
T COG3959 85 GYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMT 164 (243)
T ss_pred CCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHH
Confidence 96 788999999998 999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhh
Q 004227 299 AGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARG 377 (767)
Q Consensus 299 A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~ 377 (767)
|++++ +|||.|+|.|+.+ +||.++.+.. .+++.+|
T Consensus 165 Aah~~L~NLiaivD~N~~Q------ldG~t~~i~~-------------------------------~~pL~~k------- 200 (243)
T COG3959 165 AAHYKLDNLIAIVDRNKLQ------LDGETEEIMP-------------------------------KEPLADK------- 200 (243)
T ss_pred HHHhccCcEEEEEecCCcc------cCCchhhccC-------------------------------cchhHHH-------
Confidence 99987 8999999999953 3666654432 3677777
Q ss_pred ccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCC
Q 004227 378 LISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 378 ~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG 431 (767)
||+|||+++ .|||||+++|.+++++++.. .++|++|+++|.||
T Consensus 201 ---------~eAFGw~V~-evdG~d~~~i~~a~~~~~~~-~~rP~~IIa~Tvkg 243 (243)
T COG3959 201 ---------WEAFGWEVI-EVDGHDIEEIVEALEKAKGS-KGRPTVIIAKTVKG 243 (243)
T ss_pred ---------HHhcCceEE-EEcCcCHHHHHHHHHhhhcc-CCCCeEEEEecccC
Confidence 999999988 89999999999999999874 34999999999987
No 31
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=3.9e-44 Score=399.68 Aligned_cols=537 Identities=22% Similarity=0.284 Sum_probs=395.9
Q ss_pred CCCCccccCCCCcccCCCCCHHHHHHHH-HHHHHHHHHHhh---c----cCCCCCCcccHHHHHHHHHhh-cCCC-----
Q 004227 137 KPPTPLLDTINYPIHMKNLSTEDLEQLA-AELRADIVNSVS---K----TGGHLSANLGVVELTLALHRV-FNTP----- 202 (767)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~L~~la-~~iR~~i~~~v~---~----~gGH~gsslg~vel~~aL~~~-~~~p----- 202 (767)
.+.|||.|||..-.+.+.--..+|++.. ..+|++++.||- + .|||++|+.|++.|+.++|.. |+.+
T Consensus 54 ~~~t~yintip~~~e~~~pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~g 133 (887)
T COG2609 54 GTTTDYINTIPTEDEPEYPGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDG 133 (887)
T ss_pred cCCCCCcccccccccccCCCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCC
Confidence 3788999999998888777777888765 778999998883 2 589999999999999888754 4422
Q ss_pred CcEEEeCCCChH---HHHHHHhCC--hHHhHHHHhcC---CCCCCCCCC-CCCCCCCCCcccchhHHHHHHHHHHHHHcC
Q 004227 203 DDKIIWDVGHQA---YVHKILTGR--RSRMNTMRKTS---GLAGFPKRE-ESVHDAFGAGHSSTSISAGLGMAVARDILG 273 (767)
Q Consensus 203 ~Dr~i~s~GH~~---y~~~~l~G~--~~~l~tlr~~g---gl~G~p~~~-es~~~~~g~G~~G~~ls~A~G~AlA~kl~g 273 (767)
.|++.+ +||.+ |+...|.|| .++|++|||.. |+++||++. .++.+.|.++++|-|.-.|+-.|.-.|++.
T Consensus 134 gDlV~~-qgHaSPg~yArafLeGRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~ 212 (887)
T COG2609 134 GDLVFF-QGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLE 212 (887)
T ss_pred CceEEE-ecCCCchHHHHHHHhccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHH
Confidence 498777 89999 888899998 68899999974 599999986 467888999999999999999998888753
Q ss_pred -------CCCeEEEEEcCCcccCcchHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchh
Q 004227 274 -------KNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTN 345 (767)
Q Consensus 274 -------~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~ 345 (767)
++.+||||+|||||.|+...+|+..|++.+ +|++||||+|.| + .||++...+.+-+.|+.+.....
T Consensus 213 ~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQ-r-----LDgpVrgngkiiqelE~~FrgAG 286 (887)
T COG2609 213 ARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQ-R-----LDGPVRGNGKIIQELEGIFRGAG 286 (887)
T ss_pred hcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchh-h-----cCCcccCCchhHHHHHHHhccCC
Confidence 478999999999999999999999999887 999999999997 4 48998888888888877754433
Q ss_pred HHHHHHHHHHHhhhc-CCch---------HHHHHHHHH---------------HHhh-ccCCCh--hhhHhhcC---CeE
Q 004227 346 FRKLREAAKSITKQI-GGQT---------HEVAAKVDE---------------YARG-LISASG--STFFEELG---LYY 394 (767)
Q Consensus 346 ~~~ir~~~k~~~~~~-g~~~---------~~~~~k~~~---------------~~r~-~~~~~~--~~lfea~G---~~~ 394 (767)
|++.|.+ |... ..+.+.|++ |+|. ++...+ ..|.+.+- ++.
T Consensus 287 --------W~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~ 358 (887)
T COG2609 287 --------WNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWA 358 (887)
T ss_pred --------ceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHH
Confidence 3333221 2111 122222222 2222 222111 12222221 001
Q ss_pred eeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccccccCc----------------cccc-
Q 004227 395 IGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPK----------------TGKQ- 457 (767)
Q Consensus 395 i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd~~----------------~g~~- 457 (767)
. ...|||.+.|++|+++|++. .++|++|.++|+||+|.+.+-+..+..|.+.+.++. .++.
T Consensus 359 L-~rGGHD~~ki~aA~~~A~~~-kg~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~l 436 (887)
T COG2609 359 L-NRGGHDPEKVYAAFKKAQEH-KGRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEEL 436 (887)
T ss_pred H-hcCCCCHHHHHHHHHHHhcC-CCCceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcC
Confidence 1 24699999999999999985 469999999999999998554445667776542210 0000
Q ss_pred --------------------------------------cC----------CCCcchhHHHHHHHHHHHHHHhC---CCEE
Q 004227 458 --------------------------------------FK----------TKSPTLTYTQYFAESLIKEAETD---DKIV 486 (767)
Q Consensus 458 --------------------------------------~~----------~~~~~~s~~~af~~aL~~~~~~d---~~iv 486 (767)
.| ...+..|.+.||.+.|.+++++. ++||
T Consensus 437 py~~~g~~s~E~~yl~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riV 516 (887)
T COG2609 437 PYYHFGEDSPEYKYLHARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIV 516 (887)
T ss_pred CcCCCCCCcHHHHHHHHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccc
Confidence 00 01234688899999999999854 5899
Q ss_pred EEeccccCCcChhhhhhh-------------------------CCCcEEeccccHHHHHHH--HHHHHhc--C--CeeEE
Q 004227 487 AIHAAMGGGTGLNYFQKR-------------------------FPDRCFDVGIAEQHAVTF--AAGLASE--G--VKPFC 535 (767)
Q Consensus 487 vi~aD~~gs~gl~~f~~~-------------------------~P~R~~d~GIaE~~~vg~--AaGlA~~--G--~rP~~ 535 (767)
.+.+|...++|++++-.+ -.+++++.||+|.++++. |+|.+.. | +.||.
T Consensus 517 piipDearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfy 596 (887)
T COG2609 517 PIIPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFY 596 (887)
T ss_pred cccCchhhhccchhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeee
Confidence 999999999988754221 137999999999999985 6666664 5 78999
Q ss_pred eechhH-HHhHHHHHHHhhhcCCCCEEEEeecCC-c-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh
Q 004227 536 AIYSSF-LQRGYDQVVHDVDLQKLPVRFAMDRAG-L-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV 612 (767)
Q Consensus 536 ~tys~F-l~ra~dQi~~~~a~~~lpViiv~~~~G-l-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~ 612 (767)
..|+.| +||.-|.+ +.+|.|...-.+++..+| . .-..|-.|+.....-.-..+||+.-|.|+.+.|+.-+++..++
T Consensus 597 i~YsmFgfqRigD~~-waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~ 675 (887)
T COG2609 597 IYYSMFGFQRIGDLL-WAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLR 675 (887)
T ss_pred eeechhhhhhHHHHH-HHHHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHH
Confidence 999999 89999975 788999988555554444 3 2346788887665555567999999999999999999999987
Q ss_pred hC------CCCEEEEecCCCCcccccCCCCCCCCcccCce-eEeec-----CCcEEEEEechhHHHHHHHHHHHhc-CCC
Q 004227 613 ID------DRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKG-RILME-----GDRVAILGYGSIVQQCVLAANMLKS-QDI 679 (767)
Q Consensus 613 ~~------~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~-~vl~e-----G~dvtIva~Gs~v~~al~Aa~~L~~-~GI 679 (767)
+- +.-.||++...+.+....|. +..-.+-|+ |.++. +.++.|+++|..++++++|++.|++ .|+
T Consensus 676 rmy~~~qe~v~yYlt~~ne~~~qPamp~---gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv 752 (887)
T COG2609 676 RMYGEGQENVFYYITLSNENYPQPAMPE---GAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGV 752 (887)
T ss_pred HHhccCcCCcEEEEEeccCcCCCCCCCC---cchhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhcccc
Confidence 42 22356676655543323332 222223333 55542 3589999999999999999999988 599
Q ss_pred cEEEEEcccCCCCcH
Q 004227 680 SVTVADARFCKPLDT 694 (767)
Q Consensus 680 ~v~VIdl~slkPlD~ 694 (767)
.+.|+++++..-|-.
T Consensus 753 ~adl~svtS~~eL~r 767 (887)
T COG2609 753 EADLWSVTSFDELAR 767 (887)
T ss_pred ccCeeecccHHHHhc
Confidence 999999998766543
No 32
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=9.3e-43 Score=353.18 Aligned_cols=194 Identities=66% Similarity=1.093 Sum_probs=176.7
Q ss_pred CCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchh
Q 004227 179 GGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTS 258 (767)
Q Consensus 179 gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ 258 (767)
+||+|++||++|++++||++|+.|+||||+||||++|++++++|++++|.+||+.++++|||++.+++++.+++|++|++
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~~~~~rDr~ils~gH~~~~~~~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~g 80 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYVFDSPKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHSSTS 80 (195)
T ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCeEEEecccHHHHHHHHHCCHHHHhhhhcCCCCCCCCcCCCCCCceECCCchhhh
Confidence 69999999999999999998988999999999999999999999989999999999999999988888888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCCcchhhhHHH
Q 004227 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSAL 337 (767)
Q Consensus 259 ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L 337 (767)
+|+|+|+|+|.|+++++++|||++|||+++||++|||+++|+++++|+++|++||++ ++.++.
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~---------------- 144 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG---------------- 144 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC----------------
Confidence 999999999999999999999999999999999999999999999999999999995 221111
Q ss_pred HHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCC
Q 004227 338 SKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMP 417 (767)
Q Consensus 338 ~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~ 417 (767)
+... +|+++||.++.++||||++++.++++++++
T Consensus 145 ----------------------------~~~~----------------~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~-- 178 (195)
T cd02007 145 ----------------------------TPGN----------------LFEELGFRYIGPVDGHNIEALIKVLKEVKD-- 178 (195)
T ss_pred ----------------------------CHHH----------------HHHhcCCCccceECCCCHHHHHHHHHHHHh--
Confidence 0111 278999998766899999999999999886
Q ss_pred CCCcEEEEEEecCCCCC
Q 004227 418 APGPVLIHVVTEKGKGY 434 (767)
Q Consensus 418 ~~~P~lI~v~T~KG~G~ 434 (767)
.++|++|+++|.||+||
T Consensus 179 ~~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 179 LKGPVLLHVVTKKGKGY 195 (195)
T ss_pred CCCCEEEEEEEecccCc
Confidence 57999999999999997
No 33
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=4.3e-40 Score=392.67 Aligned_cols=534 Identities=17% Similarity=0.182 Sum_probs=362.4
Q ss_pred CCCHHHHHHHHH-HHHHHHHH--Hhhc-cCCCCCCcccHHHHHHHHHhhcC-----CCCcEEEeCCCChHHHHHHHh--C
Q 004227 154 NLSTEDLEQLAA-ELRADIVN--SVSK-TGGHLSANLGVVELTLALHRVFN-----TPDDKIIWDVGHQAYVHKILT--G 222 (767)
Q Consensus 154 ~~~~~~L~~la~-~iR~~i~~--~v~~-~gGH~gsslg~vel~~aL~~~~~-----~p~Dr~i~s~GH~~y~~~~l~--G 222 (767)
+++.+++.++-+ -+|.+..+ +..+ .++-..+.-|+.-+.+++....+ .++| +|++..|+...+.+.. |
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D-~vigmaHRgrlnvLa~v~G 263 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKE-IVIGMAHRGRLNVLVNVLG 263 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCC-EEEecCcCchHHHHHHhcC
Confidence 566666555432 23333333 2233 34444478888777777654332 3567 5555579998776664 6
Q ss_pred C--hHHhHHHHhc--------CC-CC---CCCCCC----CCCCC--CCCCcccchhHHHHHHHHHHHHHcCCC------C
Q 004227 223 R--RSRMNTMRKT--------SG-LA---GFPKRE----ESVHD--AFGAGHSSTSISAGLGMAVARDILGKN------N 276 (767)
Q Consensus 223 ~--~~~l~tlr~~--------gg-l~---G~p~~~----es~~~--~~g~G~~G~~ls~A~G~AlA~kl~g~~------~ 276 (767)
. ++.|.+|... +| .. |++... .+-+. .+-.+|++...|.|+|+|+|.++++.+ .
T Consensus 264 ~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~~~ 343 (924)
T PRK09404 264 KPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKV 343 (924)
T ss_pred CCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCcccccce
Confidence 4 4556666321 11 11 222100 01111 112388999999999999999998877 7
Q ss_pred eEEEEEcCCcc-cCcchHHHHHHHHHcCCC---EEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHH
Q 004227 277 NVISVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLRE 351 (767)
Q Consensus 277 ~Vv~viGDGal-~eG~~~EAln~A~~~~~n---li~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~ 351 (767)
.+||++|||++ .+|.+||+||+|+.|++| +|+||.||++ +++|...+ ..
T Consensus 344 v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~--~s------------------------ 397 (924)
T PRK09404 344 LPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDD--RS------------------------ 397 (924)
T ss_pred EEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHh--cc------------------------
Confidence 89999999998 799999999999999987 9999999985 44433221 00
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHc--CCCCCcEEEEEEec
Q 004227 352 AAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTE 429 (767)
Q Consensus 352 ~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~--~~~~~P~lI~v~T~ 429 (767)
.....++ ++++|...+ .|||+|++++..+.+.|.+ ...++|++|++.|.
T Consensus 398 ------------~~~~sd~----------------Ak~~giP~~-~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tY 448 (924)
T PRK09404 398 ------------TPYCTDV----------------AKMVQAPIF-HVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCY 448 (924)
T ss_pred ------------chhHHHH----------------HeecCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEe
Confidence 0112222 788898877 7999999999988876554 24689999999999
Q ss_pred CCCCCChhhhc----c---ccc--cccc-c-------------------------------cc------C----------
Q 004227 430 KGKGYPPAEAA----A---DRM--HGVV-K-------------------------------FD------P---------- 452 (767)
Q Consensus 430 KG~G~~~ae~~----~---~~~--Hg~~-~-------------------------------fd------~---------- 452 (767)
+-+|....... + ..| |--+ . ++ +
T Consensus 449 R~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~ 528 (924)
T PRK09404 449 RRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSP 528 (924)
T ss_pred cCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 98886532110 0 011 1000 0 00 0
Q ss_pred ----------cccc-------------ccCC--------------------CCcchhHHHHHHHHHHHHHHhCCCEEEEe
Q 004227 453 ----------KTGK-------------QFKT--------------------KSPTLTYTQYFAESLIKEAETDDKIVAIH 489 (767)
Q Consensus 453 ----------~~g~-------------~~~~--------------------~~~~~s~~~af~~aL~~~~~~d~~ivvi~ 489 (767)
.|+- ..|. .....+|..|.+-++..+|++|++|++++
T Consensus 529 ~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~G 608 (924)
T PRK09404 529 YLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSG 608 (924)
T ss_pred ccccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 0000 0011 01224688899999999999999999999
Q ss_pred ccccCCc--------------C----hhhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCee--EEee-chhHHH---h
Q 004227 490 AAMGGGT--------------G----LNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKP--FCAI-YSSFLQ---R 544 (767)
Q Consensus 490 aD~~gs~--------------g----l~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP--~~~t-ys~Fl~---r 544 (767)
+|++.+| | +.++.++| |.|++|++|+|.+++|++.|+|+.|.+| ++++ |.+|+. .
T Consensus 609 eDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~ 688 (924)
T PRK09404 609 QDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQV 688 (924)
T ss_pred eeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHH
Confidence 9997532 1 35677777 8999999999999999999999999975 9997 999974 7
Q ss_pred HHHHHHHhh-hc--CCCCEEEEeecCCccCCCCCCCCChhHHHHhhcC--CCcEEEecCCHHHHHHHHHHHHhhC-CCCE
Q 004227 545 GYDQVVHDV-DL--QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCL--PNMVVMAPSDEAELMHMVATAAVID-DRPS 618 (767)
Q Consensus 545 a~dQi~~~~-a~--~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~i--Pg~~V~~Psd~~E~~~~l~~A~~~~-~~P~ 618 (767)
++||+++.+ ++ ...++++...+++ .| .||-|++..--+++... |||+|+.|+++.+++++++.++.++ ++|+
T Consensus 689 ~~Dq~i~~~~~k~~~~sglv~~~p~G~-~g-~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pv 766 (924)
T PRK09404 689 VIDQFISSGEQKWGRLSGLVMLLPHGY-EG-QGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPL 766 (924)
T ss_pred HHHHHHHHHHHHhcCccCeEEEecCcC-CC-CChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCE
Confidence 799998875 43 2456777766653 34 35555553222677554 7999999999999999999875445 5999
Q ss_pred EEEecCCCCccc-------ccCCCCCCCCcccCceeEeecCCcE--EEEEechhHHHHHHHHHHHhcCCCcEEEEEcccC
Q 004227 619 CFRFPRGNGIGA-------VLPPNNKGTPLEIGKGRILMEGDRV--AILGYGSIVQQCVLAANMLKSQDISVTVADARFC 689 (767)
Q Consensus 619 ~irl~r~~~~~~-------~~p~~~~~~~~~igk~~vl~eG~dv--tIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~sl 689 (767)
+|..|+..+... ++++ ..+...++++. .++++|| +|||||.+++.+++|++.+.. .++.|||+++|
T Consensus 767 v~~~pK~L~r~~~~~s~~~e~~~--~~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~~--~~v~ii~le~L 841 (924)
T PRK09404 767 VVMTPKSLLRHPLAVSSLEELAE--GSFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRGI--DDVAIVRIEQL 841 (924)
T ss_pred EEeccHHHhCCCCCCCCHHHcCC--CCceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCCC--CCEEEEEeeee
Confidence 999987643210 1111 11223455544 5677899 799999999999999986543 49999999999
Q ss_pred CCCcHHHHHHHhccC----CEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 690 KPLDTDLIRQLANEH----EILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 690 kPlD~e~i~~~~~~~----~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
.|||.++|.++++++ +.|++-||....|....|...|...- ....+++-+|-|..-.+--|
T Consensus 842 ~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~--~~~~~~~y~gR~~~aspA~G 906 (924)
T PRK09404 842 YPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVL--PEGQKLRYAGRPASASPAVG 906 (924)
T ss_pred CCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHHh--ccCCeeEEECCCCcCCCCCC
Confidence 999999999988875 45555555668999989888876431 11135777777765544443
No 34
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=2.8e-43 Score=381.98 Aligned_cols=232 Identities=31% Similarity=0.514 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHhh-ccCCCCCCcccHHHHHHHHHh-hcC----CC----CcEEEeCCCChH---HHHHHHhCC---h
Q 004227 161 EQLAAELRADIVNSVS-KTGGHLSANLGVVELTLALHR-VFN----TP----DDKIIWDVGHQA---YVHKILTGR---R 224 (767)
Q Consensus 161 ~~la~~iR~~i~~~v~-~~gGH~gsslg~vel~~aL~~-~~~----~p----~Dr~i~s~GH~~---y~~~~l~G~---~ 224 (767)
+++|++||.++++|+. .++||+|++||++|++++||. +++ +| |||||+|+||.+ |+.+++.|+ .
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSSS-H
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCCCCH
Confidence 5688999999999996 488999999999999999985 332 33 799999999999 899999997 4
Q ss_pred HHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCcccCcchH
Q 004227 225 SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAY 293 (767)
Q Consensus 225 ~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g----------~~~~Vv~viGDGal~eG~~~ 293 (767)
++|.+||+.|+ ++|||+....++..+.+|++|+|+++|+|||+|.|+++ .+++|||++|||+++||++|
T Consensus 82 ~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~ 161 (332)
T PF00456_consen 82 EDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVW 161 (332)
T ss_dssp HHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHH
T ss_pred HHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhH
Confidence 78999999997 79999976788889999999999999999999998754 36889999999999999999
Q ss_pred HHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 004227 294 EAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (767)
Q Consensus 294 EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~ 372 (767)
||+.+|++++ +|||+|+|+|+. ++ ||.+..+. .+++.+|
T Consensus 162 EA~~~A~~~~L~nLi~i~D~N~~-q~-----dg~~~~~~--------------------------------~~~~~~k-- 201 (332)
T PF00456_consen 162 EAASLAGHYKLDNLIVIYDSNGI-QI-----DGPTDIVF--------------------------------SEDIAKK-- 201 (332)
T ss_dssp HHHHHHHHTT-TTEEEEEEEESE-ET-----TEEGGGTH--------------------------------HSHHHHH--
T ss_pred HHHHHHHHhCCCCEEEEEecCCc-cc-----CCCccccc--------------------------------chHHHHH--
Confidence 9999999998 889999999994 22 44433110 1455555
Q ss_pred HHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc
Q 004227 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (767)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (767)
|++|||+++...||||+++|.+|+++++.. .++|++|+++|+||+|++++|+. .+|||.+
T Consensus 202 --------------~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~~-~~~Hg~~ 261 (332)
T PF00456_consen 202 --------------FEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEGT-AKWHGSP 261 (332)
T ss_dssp --------------HHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTTS-GGGTSS-
T ss_pred --------------HHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhccc-chhhccC
Confidence 999999998444999999999999999874 47999999999999999998865 6899965
No 35
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=3e-41 Score=367.14 Aligned_cols=230 Identities=24% Similarity=0.343 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHhhc-c------CCCCCCcccHHHHHHHHH-hhcCC-----CCcEEEeCCCChH---HHHHHHhCC-
Q 004227 161 EQLAAELRADIVNSVSK-T------GGHLSANLGVVELTLALH-RVFNT-----PDDKIIWDVGHQA---YVHKILTGR- 223 (767)
Q Consensus 161 ~~la~~iR~~i~~~v~~-~------gGH~gsslg~vel~~aL~-~~~~~-----p~Dr~i~s~GH~~---y~~~~l~G~- 223 (767)
+++.+.+|+.+++|+.+ . |||+|++||++||+++|| ++++. ++|| |+|+||++ |++++++|+
T Consensus 5 ~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDR-vlSkGHas~~lYA~L~l~G~~ 83 (386)
T cd02017 5 RRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL-VYFQGHASPGIYARAFLEGRL 83 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCE-EEeCCcccHHHHHHHHHcCCC
Confidence 34569999999999964 3 399999999999999997 45652 3899 77899999 999999997
Q ss_pred -hHHhHHHHhcCC---CCCCCCCCCCCC-CCCCCcccchhHHHHHHHHHHHHH-------cCCCCeEEEEEcCCcccCcc
Q 004227 224 -RSRMNTMRKTSG---LAGFPKREESVH-DAFGAGHSSTSISAGLGMAVARDI-------LGKNNNVISVIGDGAMTAGQ 291 (767)
Q Consensus 224 -~~~l~tlr~~gg---l~G~p~~~es~~-~~~g~G~~G~~ls~A~G~AlA~kl-------~g~~~~Vv~viGDGal~eG~ 291 (767)
.++|.+|||.++ +++||++.+.+. ..+.+|++|++++.|+|||+|.|+ .+.+++|||++||||++||+
T Consensus 84 ~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~ 163 (386)
T cd02017 84 TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPE 163 (386)
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHH
Confidence 488999999998 899998876554 778999999999999999999998 56789999999999999999
Q ss_pred hHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHH
Q 004227 292 AYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (767)
Q Consensus 292 ~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k 370 (767)
+|||+++|++++ +|||+|+|+|++ + .||++..++. ..+++.+|
T Consensus 164 vwEA~~~Ag~~kL~NLivIvD~N~~-q-----idG~t~~v~~------------------------------~~e~l~~k 207 (386)
T cd02017 164 SLGAIGLAAREKLDNLIFVVNCNLQ-R-----LDGPVRGNGK------------------------------IIQELEGI 207 (386)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCC-c-----cCCccccccc------------------------------CchhHHHH
Confidence 999999999988 899999999995 2 2555554321 12567777
Q ss_pred HHHHHhhccCCChhhhHhhcCCeEeeccC---------------------------------------------------
Q 004227 371 VDEYARGLISASGSTFFEELGLYYIGPVD--------------------------------------------------- 399 (767)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vD--------------------------------------------------- 399 (767)
|++|||+++ .||
T Consensus 208 ----------------f~AfGW~vi-~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~ 270 (386)
T cd02017 208 ----------------FRGAGWNVI-KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPEL 270 (386)
T ss_pred ----------------HHhcCCEEE-EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHH
Confidence 999999988 576
Q ss_pred ------------------CCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCC-hhhhccccccc
Q 004227 400 ------------------GHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYP-PAEAAADRMHG 446 (767)
Q Consensus 400 ------------------Ghdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~-~ae~~~~~~Hg 446 (767)
|||+++|.+||++++.. .++|++|+++|.||+|++ ++|+. ..||+
T Consensus 271 ~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~TikG~G~~~~~e~~-~~~h~ 334 (386)
T cd02017 271 KALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAKTIKGYGLGAAGEGR-NHAHQ 334 (386)
T ss_pred HHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEeCeecCCCChhccCC-cchhc
Confidence 99999999999998853 478999999999999999 46654 67886
No 36
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.7e-41 Score=342.45 Aligned_cols=291 Identities=24% Similarity=0.424 Sum_probs=249.2
Q ss_pred cchhHHHHHHHHHHHHHHhCCCEEEEecccc---CCcCh-hhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCeeEEee
Q 004227 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMG---GGTGL-NYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (767)
Q Consensus 463 ~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~---gs~gl-~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t 537 (767)
++++.++|+++++.+++++|+++++++++++ |+.++ .++.++| +.|++|++|+|.+..|+|.|+|+.|+||+|+.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 4578999999999999999999999999986 44444 5777777 67999999999999999999999999999996
Q ss_pred -chhHHHhHHHHHHHhhhc--------CCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHH
Q 004227 538 -YSSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (767)
Q Consensus 538 -ys~Fl~ra~dQi~~~~a~--------~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~ 608 (767)
-..|+..++|||+|.+++ +++|++|.+.. |....-|.+|++.+. +++.++||++|++|.+++|++++++
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPn-G~~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPN-GAAAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCC-CcccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHHH
Confidence 678999999999999874 57788887644 322235789999887 7899999999999999999999999
Q ss_pred HHHhhCCCCEEEEecCCCCcccc--cCC--CCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEE
Q 004227 609 TAAVIDDRPSCFRFPRGNGIGAV--LPP--NNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVA 684 (767)
Q Consensus 609 ~A~~~~~~P~~irl~r~~~~~~~--~p~--~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VI 684 (767)
.|++ +++|+++.+.. .+++.. +|+ ..+++..++||+.+.|+|+||+||++.-++..|++||+.|.++|++++||
T Consensus 191 aAIR-d~NPVV~lEne-lLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVI 268 (359)
T KOG0524|consen 191 AAIR-DENPVVFLENE-LLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVI 268 (359)
T ss_pred Hhcc-CCCCeEEEech-hhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeE
Confidence 9986 89999998754 344433 222 22447789999999999999999999999999999999999999999999
Q ss_pred EcccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCC--CCCCceEEEE---ecCCcccccccccccCc
Q 004227 685 DARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGI--LDGPLKVFIF---SLIQKLETDCRLLSFPS 758 (767)
Q Consensus 685 dl~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~--~d~~~k~~~~---gl~D~f~~~~~~~~~~~ 758 (767)
|+|+|+|||.++|.++++|++++++||++. .+|+|++|++.+.|+.| +|+| +.|+ .+|-.|....+.++||-
T Consensus 269 nlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAP--v~rvtg~DvP~PYa~~lE~~a~p~ 346 (359)
T KOG0524|consen 269 NLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAP--VQRVTGADVPTPYAKTLEDWAVPQ 346 (359)
T ss_pred eeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcch--hhhhcCCCCCCccchhhHhhcCCC
Confidence 999999999999999999999999999997 79999999999999765 5765 4445 45667778888889985
Q ss_pred c
Q 004227 759 P 759 (767)
Q Consensus 759 ~ 759 (767)
.
T Consensus 347 ~ 347 (359)
T KOG0524|consen 347 P 347 (359)
T ss_pred H
Confidence 3
No 37
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=1.8e-38 Score=334.90 Aligned_cols=227 Identities=29% Similarity=0.484 Sum_probs=192.5
Q ss_pred HHHHHHHHHhh-ccCCCCCCcccHHHHHHHHHhhc-C----C----CCcEEEeCCCChH---HHHHHHhCC--hHHhHHH
Q 004227 166 ELRADIVNSVS-KTGGHLSANLGVVELTLALHRVF-N----T----PDDKIIWDVGHQA---YVHKILTGR--RSRMNTM 230 (767)
Q Consensus 166 ~iR~~i~~~v~-~~gGH~gsslg~vel~~aL~~~~-~----~----p~Dr~i~s~GH~~---y~~~~l~G~--~~~l~tl 230 (767)
++|+++++|+. .++||+++++|++|++++||+.+ + + ++||||+|+||++ |++++++|+ .++|.+|
T Consensus 2 ~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~ 81 (255)
T cd02012 2 RIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKTF 81 (255)
T ss_pred hHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHHh
Confidence 69999999996 48899999999999999998643 2 1 3799999999999 678899997 4889999
Q ss_pred HhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCC-CEEE
Q 004227 231 RKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDA-NLIV 308 (767)
Q Consensus 231 r~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~-nli~ 308 (767)
|+.++ ++|||++..+++..+++|++|+++|+|+|+|+|.++++++++|||++|||++++|++|||+++|+++++ |+++
T Consensus 82 ~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~ 161 (255)
T cd02012 82 RQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIA 161 (255)
T ss_pred cccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEE
Confidence 99986 899999888888889999999999999999999999999999999999999999999999999999985 6999
Q ss_pred EEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHh
Q 004227 309 VLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFE 388 (767)
Q Consensus 309 Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfe 388 (767)
|+|||++. + ++...... ...++.. +|+
T Consensus 162 vvdnN~~~-~-----~~~~~~~~-------------------------------~~~~~~~----------------~~~ 188 (255)
T cd02012 162 IVDSNRIQ-I-----DGPTDDIL-------------------------------FTEDLAK----------------KFE 188 (255)
T ss_pred EEECCCcc-c-----cCcHhhcc-------------------------------CchhHHH----------------HHH
Confidence 99999852 1 11110000 0123333 499
Q ss_pred hcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc
Q 004227 389 ELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (767)
Q Consensus 389 a~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (767)
+|||.++ .|||||+++|.++++++++. .++|++|+++|.||+|++++|+ ..+||+.+
T Consensus 189 a~G~~~~-~v~G~d~~~l~~al~~a~~~-~~~P~~I~~~t~kg~g~~~~e~-~~~~H~~~ 245 (255)
T cd02012 189 AFGWNVI-EVDGHDVEEILAALEEAKKS-KGKPTLIIAKTIKGKGVPFMEN-TAKWHGKP 245 (255)
T ss_pred HcCCeEE-EECCCCHHHHHHHHHHHHHc-CCCCEEEEEEeecccccCccCC-CccccCCC
Confidence 9999987 79999999999999998863 2789999999999999999885 57889764
No 38
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=7.2e-37 Score=363.37 Aligned_cols=438 Identities=16% Similarity=0.122 Sum_probs=306.2
Q ss_pred CCcccchhHHHHHHHHHHHHHcCC------CCeEEEEEcCCcc-cCcchHHHHHHHHHcCCCE---EEEEECCCC-Cccc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGK------NNNVISVIGDGAM-TAGQAYEAMNNAGFLDANL---IVVLNDNKQ-VSLP 319 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~------~~~Vv~viGDGal-~eG~~~EAln~A~~~~~nl---i~Iv~dN~~-~S~p 319 (767)
..+|++...|.|+|.|.|.++++. +..++|++|||++ .+|.+||+||+|+.|++|+ |+||.||++ ++++
T Consensus 313 npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~ 392 (929)
T TIGR00239 313 NPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTN 392 (929)
T ss_pred CCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEc
Confidence 357899999999999999998865 5678999999997 7999999999999999997 999999985 4432
Q ss_pred cccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccC
Q 004227 320 TATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVD 399 (767)
Q Consensus 320 t~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vD 399 (767)
.... ... ....+ +++++|...+ .||
T Consensus 393 ~~~~--~s~------------------------------------~~~sd----------------~Ak~ygiP~~-~VD 417 (929)
T TIGR00239 393 PLDA--RST------------------------------------PYCSD----------------LAKMIQAPIF-HVN 417 (929)
T ss_pred HHHh--cCc------------------------------------cCHHH----------------HheecCCCEE-EEC
Confidence 2110 000 11122 2688898877 799
Q ss_pred CCCHHHHHHHHHHhHc--CCCCCcEEEEEEecCCCCCChhhhcc---------ccccccc--c-----------------
Q 004227 400 GHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPAEAAA---------DRMHGVV--K----------------- 449 (767)
Q Consensus 400 Ghdi~~l~~al~~a~~--~~~~~P~lI~v~T~KG~G~~~ae~~~---------~~~Hg~~--~----------------- 449 (767)
|+|++++..+.+.|.+ +...+|++|++.|.+-.|........ -+-|--+ .
T Consensus 418 G~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~ 497 (929)
T TIGR00239 418 ADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVT 497 (929)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999988876543 23679999999999988764321100 0001000 0
Q ss_pred ----------------------ccCc-----------------cc----------c---ccCCC----------------
Q 004227 450 ----------------------FDPK-----------------TG----------K---QFKTK---------------- 461 (767)
Q Consensus 450 ----------------------fd~~-----------------~g----------~---~~~~~---------------- 461 (767)
.++. |+ + ..++.
T Consensus 498 ~i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~ 577 (929)
T TIGR00239 498 EMVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTK 577 (929)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHH
Confidence 0000 00 0 00000
Q ss_pred -----CcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcC------------------hhhhhhhC-CCcEEeccccHH
Q 004227 462 -----SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG------------------LNYFQKRF-PDRCFDVGIAEQ 517 (767)
Q Consensus 462 -----~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~g------------------l~~f~~~~-P~R~~d~GIaE~ 517 (767)
....+|.+|.+.++..++++|++|+++++|++.++- +.++.++| +.|++|++|+|.
T Consensus 578 ~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~ 657 (929)
T TIGR00239 578 AMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEE 657 (929)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHH
Confidence 012468899999999999999999999999975321 35677777 799999999999
Q ss_pred HHHHHHHHHHhcCCeeE--Eee-chhHHH---hHHHHHHHhh-hc--CCCCEEEEeecCCccCCCCCCCCC-hhHHHHh-
Q 004227 518 HAVTFAAGLASEGVKPF--CAI-YSSFLQ---RGYDQVVHDV-DL--QKLPVRFAMDRAGLVGADGPTHCG-AFDVTFM- 586 (767)
Q Consensus 518 ~~vg~AaGlA~~G~rP~--~~t-ys~Fl~---ra~dQi~~~~-a~--~~lpViiv~~~~Gl~G~dG~TH~~-~~Dla~l- 586 (767)
+++|++.|+|+.|.+|+ ++. |.+|+. .++||+++.. ++ ...++++...+++ .|. ||-|++ .-+ ++|
T Consensus 658 a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G~-~g~-g~~hsS~~~E-~~lq 734 (929)
T TIGR00239 658 SVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHGY-EGQ-GPEHSSGRLE-RFLQ 734 (929)
T ss_pred HHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCcC-CCC-CchhhccCHH-HHHH
Confidence 99999999999998875 776 999984 7799998873 44 3456777766653 343 555554 333 566
Q ss_pred -hcCCCcEEEecCCHHHHHHHHH-HHHhhCCCCEEEEecCCCCcc-c------ccCCCCCCCCcccCcee-----EeecC
Q 004227 587 -SCLPNMVVMAPSDEAELMHMVA-TAAVIDDRPSCFRFPRGNGIG-A------VLPPNNKGTPLEIGKGR-----ILMEG 652 (767)
Q Consensus 587 -r~iPg~~V~~Psd~~E~~~~l~-~A~~~~~~P~~irl~r~~~~~-~------~~p~~~~~~~~~igk~~-----vl~eG 652 (767)
.+.|||+|+.|+++.+++++++ +|++..++|+++..|+..+.. . ++|+. .+..+++... +.+++
T Consensus 735 l~~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~--~f~~~i~~~~~~~~~~~~~~ 812 (929)
T TIGR00239 735 LAAEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG--TFQPVIGEIEESGLSLDPEG 812 (929)
T ss_pred HhCCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCC--CcccccccccccccccCccC
Confidence 7899999999999999999999 587644899999998764321 1 23332 2333443211 22233
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCC----EEEEEcCCCCCCHHHHHHHHHHh
Q 004227 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE----ILITVEEGSVGGFGSHVCHFLTL 728 (767)
Q Consensus 653 ~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~----~vVvvEe~~~GGlgs~I~~~l~~ 728 (767)
-+.+|+++| ++..++.+ +.++++|+++.|||+++|+|||.++|.++++++. .|++-||....|-=..|...|..
T Consensus 813 v~~vv~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~ 890 (929)
T TIGR00239 813 VKRLVLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLRE 890 (929)
T ss_pred CcEEEEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHH
Confidence 445555555 88888888 6777789999999999999999999999988873 55555566565544566666654
Q ss_pred cCCCCCCceEEEEecCCccccccc
Q 004227 729 SGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 729 ~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
.-. . ..+++-+|-|..-.+--|
T Consensus 891 ~l~-~-~~~l~y~gR~~~aspA~G 912 (929)
T TIGR00239 891 VIP-E-GVSVRYAGRPASASPAVG 912 (929)
T ss_pred Hhc-c-CCceEEeCCCCCCCCCCC
Confidence 210 1 125777777765544433
No 39
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=6.5e-34 Score=278.79 Aligned_cols=154 Identities=51% Similarity=0.847 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHH
Q 004227 470 YFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQV 549 (767)
Q Consensus 470 af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi 549 (767)
+++++|.+++++||+++++++|++.++++.+|+++||+||+|+||+|++++++|+|+|+.|++|++++|+.|++|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 68899999999999999999999988889999999999999999999999999999999999999999988899999999
Q ss_pred HHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEecC
Q 004227 550 VHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR 624 (767)
Q Consensus 550 ~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~r 624 (767)
+++++++++||+++++++|+ .|++|+|||+.+|+++++++||++|++|+|++|++.++++|++ +++|++||++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999999988 5689999999999999999999999999999999999999997 56799999986
No 40
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.9e-34 Score=286.34 Aligned_cols=264 Identities=22% Similarity=0.360 Sum_probs=225.9
Q ss_pred cchhHHHHHHHHHHHHHHhCCCEEEEeccccCC--cC-hhhhhhhCC-CcEEeccccHHHHHHHHHHHHhcCCeeEEee-
Q 004227 463 PTLTYTQYFAESLIKEAETDDKIVAIHAAMGGG--TG-LNYFQKRFP-DRCFDVGIAEQHAVTFAAGLASEGVKPFCAI- 537 (767)
Q Consensus 463 ~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs--~g-l~~f~~~~P-~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t- 537 (767)
++++..++++++|.-.++.||+-+++++|++-+ +. ..+++++|. +|+||++++||+++|+..|+|..|.+.+.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiq 118 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQ 118 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEe
Confidence 457888999999999999999999999998732 21 247888885 7999999999999999999999999999999
Q ss_pred chhHHHhHHHHHHHhhhcC--------CCC-EEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHH
Q 004227 538 YSSFLQRGYDQVVHDVDLQ--------KLP-VRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (767)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~~--------~lp-Viiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~ 608 (767)
|++|+..+||||+|.+++. ++- ..+. ...|.+|.++..|++.-+ +++.+.||++|+.|..+.|+++++.
T Consensus 119 fadyifpafdqivneaakfryrsgnqfncg~ltir-~p~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakglll 196 (362)
T KOG0525|consen 119 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIR-APWGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLLL 196 (362)
T ss_pred eccccchhHHHHHHHHHhheeccCCccccCceEEe-ccccccccccccccCCch-hheecCCCceEEecCCcchhhceee
Confidence 9999999999999998852 111 3333 334668999999999887 7999999999999999999999999
Q ss_pred HHHhhCCCCEEEEecCCCCcc---cccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhc-CCCcEEEE
Q 004227 609 TAAVIDDRPSCFRFPRGNGIG---AVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKS-QDISVTVA 684 (767)
Q Consensus 609 ~A~~~~~~P~~irl~r~~~~~---~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~-~GI~v~VI 684 (767)
.+++ +.+|++++.|+-. +. .++|. .+|.++++.+.++|+|+|+++|+||..++.++++|.+-++ +|++++||
T Consensus 197 scir-dpnp~iffepk~l-yr~a~edvp~--~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevi 272 (362)
T KOG0525|consen 197 SCIR-DPNPCIFFEPKIL-YRQAVEDVPE--GDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVI 272 (362)
T ss_pred eecc-CCCceEEechHHH-HHHhhhhCCC--CCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEE
Confidence 9986 8999999998642 22 24564 4678899999999999999999999999999999876644 59999999
Q ss_pred EcccCCCCcHHHHHHHhccC-CEEEEEcCCCCCCHHHHHHHHHHhcCCC
Q 004227 685 DARFCKPLDTDLIRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGIL 732 (767)
Q Consensus 685 dl~slkPlD~e~i~~~~~~~-~~vVvvEe~~~GGlgs~I~~~l~~~~~~ 732 (767)
|++++-|+|+|.+.++++++ +.+|+.|...+||||++|++.+.+++|+
T Consensus 273 dlkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl 321 (362)
T KOG0525|consen 273 DLKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFL 321 (362)
T ss_pred eeecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHh
Confidence 99999999999999888776 5666666667999999999999999885
No 41
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.97 E-value=2.6e-31 Score=262.82 Aligned_cols=153 Identities=25% Similarity=0.397 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEeccccCC----cChhhhhhhCCC-cEEeccccHHHHHHHHHHHHhcCCeeEEe-echhHH
Q 004227 469 QYFAESLIKEAETDDKIVAIHAAMGGG----TGLNYFQKRFPD-RCFDVGIAEQHAVTFAAGLASEGVKPFCA-IYSSFL 542 (767)
Q Consensus 469 ~af~~aL~~~~~~d~~ivvi~aD~~gs----~gl~~f~~~~P~-R~~d~GIaE~~~vg~AaGlA~~G~rP~~~-tys~Fl 542 (767)
++++++|.+++++||+++++++|++.+ ..+++|+++||+ ||||+||+||+++++|+|+|++|++||++ +|++|+
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl 80 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHH
Confidence 378999999999999999999998642 246899999999 99999999999999999999999999999 699999
Q ss_pred HhHHHHHHHhhhcC--------CCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhC
Q 004227 543 QRGYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVID 614 (767)
Q Consensus 543 ~ra~dQi~~~~a~~--------~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~ 614 (767)
+|++|||++++|++ ++||++++.++| .+.+|+||+ .+|+++||++|||+|++|+|+.|++.+++++++ .
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths-~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~ 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHS-QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-D 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhh-hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-C
Confidence 99999999999976 599999997777 567899976 567899999999999999999999999999987 6
Q ss_pred CCCEEEEecC
Q 004227 615 DRPSCFRFPR 624 (767)
Q Consensus 615 ~~P~~irl~r 624 (767)
++|++|++||
T Consensus 158 ~~P~~~~e~k 167 (167)
T cd07036 158 DDPVIFLEHK 167 (167)
T ss_pred CCcEEEEecC
Confidence 7899999875
No 42
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.97 E-value=4.2e-31 Score=264.35 Aligned_cols=163 Identities=39% Similarity=0.582 Sum_probs=145.2
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCC---CcEEeccccHHHHHHHHHHHHhcC--CeeEEeec
Q 004227 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFP---DRCFDVGIAEQHAVTFAAGLASEG--VKPFCAIY 538 (767)
Q Consensus 464 ~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P---~R~~d~GIaE~~~vg~AaGlA~~G--~rP~~~ty 538 (767)
+.+++++++++|.+++++|++++++++|++++++...+.+.+| +||+|+||+|++++++|+|+|+.| ++|++.+|
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f 81 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF 81 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeec
Confidence 4689999999999999999999999999998887766665555 599999999999999999999999 77888889
Q ss_pred hhHHH----hHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhh
Q 004227 539 SSFLQ----RGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI 613 (767)
Q Consensus 539 s~Fl~----ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~ 613 (767)
++|+. |+++|++++.+++++||+ ++.+.|+ .|.+|+|||+.+|+++|+++||++|++|+|++|++.++++++++
T Consensus 82 ~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~ 160 (178)
T PF02779_consen 82 ADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR 160 (178)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS
T ss_pred cccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHh
Confidence 99998 999999999999999999 7788887 78999999999999999999999999999999999999999985
Q ss_pred -CCCCEEEEecCCCC
Q 004227 614 -DDRPSCFRFPRGNG 627 (767)
Q Consensus 614 -~~~P~~irl~r~~~ 627 (767)
+++|+|||++|+++
T Consensus 161 ~~~~P~~ir~~r~~~ 175 (178)
T PF02779_consen 161 ESDGPVYIREPRGLY 175 (178)
T ss_dssp SSSSEEEEEEESSEE
T ss_pred CCCCeEEEEeeHHhC
Confidence 58999999999763
No 43
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.96 E-value=6.1e-28 Score=238.93 Aligned_cols=159 Identities=40% Similarity=0.627 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHHHHHhCC-CEEEEeccccCCcChhhhhhhCCCc-------EEeccccHHHHHHHHHHHHhcCCeeEEee
Q 004227 466 TYTQYFAESLIKEAETDD-KIVAIHAAMGGGTGLNYFQKRFPDR-------CFDVGIAEQHAVTFAAGLASEGVKPFCAI 537 (767)
Q Consensus 466 s~~~af~~aL~~~~~~d~-~ivvi~aD~~gs~gl~~f~~~~P~R-------~~d~GIaE~~~vg~AaGlA~~G~rP~~~t 537 (767)
+++++++++|.+++++|+ +++++++|++.++++.. .+.||+| |+|+||+|++++++|+|+|++|++||+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEe
Confidence 467899999999999955 99999999988877653 5667665 99999999999999999999999999999
Q ss_pred chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCC
Q 004227 538 YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP 617 (767)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P 617 (767)
|+.|+.|++||++++++.++.|+++..+.++..|.+|+|||+.+|+++++.+||++|++|+|++|++++++++++..++|
T Consensus 80 ~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p 159 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGP 159 (168)
T ss_pred eHHHHHHHHHHHHHhCcccCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCC
Confidence 99999999999998877664555554333333788999999999999999999999999999999999999999755789
Q ss_pred EEEEecCC
Q 004227 618 SCFRFPRG 625 (767)
Q Consensus 618 ~~irl~r~ 625 (767)
++||++++
T Consensus 160 ~~i~~~~~ 167 (168)
T smart00861 160 PVIRLERK 167 (168)
T ss_pred EEEEecCC
Confidence 99999875
No 44
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=4.9e-24 Score=240.64 Aligned_cols=469 Identities=18% Similarity=0.217 Sum_probs=299.3
Q ss_pred CCCCCCcccHHHHHHHHHhhcC-CCCcEE-EeCCCChHH---HHHHHhCC-----------h----HHhHHHHhcCCCCC
Q 004227 179 GGHLSANLGVVELTLALHRVFN-TPDDKI-IWDVGHQAY---VHKILTGR-----------R----SRMNTMRKTSGLAG 238 (767)
Q Consensus 179 gGH~gsslg~vel~~aL~~~~~-~p~Dr~-i~s~GH~~y---~~~~l~G~-----------~----~~l~tlr~~ggl~G 238 (767)
=||+|++.|..-+.+.+..+.+ ...+.+ |...||... +..+|.|. . +.+..|+..||+.+
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~PgGi~S 139 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPGGIGS 139 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCCCCccc
Confidence 4999999999999988876543 233444 555699983 33456662 1 23344455678888
Q ss_pred CCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHH----HcCCCEEEEEECCC
Q 004227 239 FPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAG----FLDANLIVVLNDNK 314 (767)
Q Consensus 239 ~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~----~~~~nli~Iv~dN~ 314 (767)
|..+ |.++..--.|-+|++++.|.|.|+ ..++-.+.|++||||-.+|.-.-+..--. ..+.+++-|+.-|+
T Consensus 140 H~~p-etPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNG 214 (793)
T COG3957 140 HVAP-ETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNG 214 (793)
T ss_pred ccCC-CCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEecc
Confidence 8776 344444445888888888877765 56899999999999877775322211111 22478999999999
Q ss_pred C-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCe
Q 004227 315 Q-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (767)
Q Consensus 315 ~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (767)
+ ++.||.. +.++ -+++. .+|+.+||.
T Consensus 215 ykI~npT~l--------ar~s-----------------------------~~el~----------------~~f~G~Gy~ 241 (793)
T COG3957 215 YKIENPTVL--------ARIS-----------------------------DEELK----------------ALFEGYGYE 241 (793)
T ss_pred eeccCceee--------eecC-----------------------------hHHHH----------------HHHhhCCCc
Confidence 6 5554432 1110 01221 249999998
Q ss_pred EeeccCCCCHHHHHHH--------HH-------HhHcC-CCCCc--EEEEEEecCCCCCChhhh-----cccccccccc-
Q 004227 394 YIGPVDGHNVEDLVTI--------FQ-------RVKEM-PAPGP--VLIHVVTEKGKGYPPAEA-----AADRMHGVVK- 449 (767)
Q Consensus 394 ~i~~vDGhdi~~l~~a--------l~-------~a~~~-~~~~P--~lI~v~T~KG~G~~~ae~-----~~~~~Hg~~~- 449 (767)
.+ .|+|+|.++..+. ++ +++.. ...+| -+|+++|.||++-+.--. ..-+.|.++.
T Consensus 242 p~-~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~ 320 (793)
T COG3957 242 PV-FVEGADPADMHQLMAAVLDTAFEEIQRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLK 320 (793)
T ss_pred ee-EecCCChHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCC
Confidence 76 6899988763222 11 23221 12344 378899999987552111 1123576652
Q ss_pred ------------------------ccCc------------cc-cc---------------cC-------------CCCcc
Q 004227 450 ------------------------FDPK------------TG-KQ---------------FK-------------TKSPT 464 (767)
Q Consensus 450 ------------------------fd~~------------~g-~~---------------~~-------------~~~~~ 464 (767)
||.. +| +. ++ +...+
T Consensus 321 ~~~~~p~h~~~l~~wl~sy~p~elfde~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~ 400 (793)
T COG3957 321 GHNLNPAHLLELEEWLKSYKPEELFDEHGALKPELRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVT 400 (793)
T ss_pred CCCCCchhhHHHHHHHHhcChHhhhcccCCCCHHHHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccc
Confidence 2210 00 00 00 00123
Q ss_pred hhHHHHHHHHHHHHHHhCCC-EEEEeccccCCcChhhhhh----h-------------CCCcEEeccccHHHHHHHHHHH
Q 004227 465 LTYTQYFAESLIKEAETDDK-IVAIHAAMGGGTGLNYFQK----R-------------FPDRCFDVGIAEQHAVTFAAGL 526 (767)
Q Consensus 465 ~s~~~af~~aL~~~~~~d~~-ivvi~aD~~gs~gl~~f~~----~-------------~P~R~~d~GIaE~~~vg~AaGl 526 (767)
..-+.++++.+.++++.|++ +.++++|...|.++....+ . -.+|+++ .++|+.+.|++.|+
T Consensus 401 ~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy 479 (793)
T COG3957 401 AESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGY 479 (793)
T ss_pred hhhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHH
Confidence 34578899999999999987 9999999988887753221 1 1379999 79999999999999
Q ss_pred HhcCCeeEEeechhHHHhHHHHHHHhhhc-----------CCCCEEEEeecCCc--cCCCCCCCCChhHHHHhhc-CCC-
Q 004227 527 ASEGVKPFCAIYSSFLQRGYDQVVHDVDL-----------QKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSC-LPN- 591 (767)
Q Consensus 527 A~~G~rP~~~tys~Fl~ra~dQi~~~~a~-----------~~lpViiv~~~~Gl--~G~dG~TH~~~~Dla~lr~-iPg- 591 (767)
++.|.+.++++|.+|+ +..|.++++.++ ...|-......++. .+.+|-|||...-+..+.+ .++
T Consensus 480 ~LtGr~glf~sYEaF~-~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~ 558 (793)
T COG3957 480 LLTGRHGLFASYEAFA-HIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDI 558 (793)
T ss_pred HhcCCccceeeHHHHH-HHHHHHHhhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCc
Confidence 9999999999999998 334444444332 12232222333444 4889999998766666554 455
Q ss_pred cEEEecCCHHHHHHHHHHHHhhCCCCEEEEecCCCCcccc-cCCCCCCCCcccCceeEee--cC-CcEEEEEechhH-HH
Q 004227 592 MVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAV-LPPNNKGTPLEIGKGRILM--EG-DRVAILGYGSIV-QQ 666 (767)
Q Consensus 592 ~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~r~~~~~~~-~p~~~~~~~~~igk~~vl~--eG-~dvtIva~Gs~v-~~ 666 (767)
++||.|+|++-+..++.+|++..++-.+|..+|++.+... ..+....+.-.++-+.... +| .||++.+.|.+. .+
T Consensus 559 vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e 638 (793)
T COG3957 559 VRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIE 638 (793)
T ss_pred eeEecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHH
Confidence 6699999999999999999997778888888887643321 0000000100011111111 22 379999999987 99
Q ss_pred HHHHHHHHhcCC--CcEEEEE---cccCCC-------CcHHHHHHHhccCCEEE
Q 004227 667 CVLAANMLKSQD--ISVTVAD---ARFCKP-------LDTDLIRQLANEHEILI 708 (767)
Q Consensus 667 al~Aa~~L~~~G--I~v~VId---l~slkP-------lD~e~i~~~~~~~~~vV 708 (767)
+++|+++|++++ ++++||+ +..+.| ++.+...++.-+.+.+|
T Consensus 639 ~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvi 692 (793)
T COG3957 639 VLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVI 692 (793)
T ss_pred HHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCccee
Confidence 999999999998 8777655 455555 33445555544444444
No 45
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.91 E-value=3.3e-23 Score=224.28 Aligned_cols=227 Identities=24% Similarity=0.326 Sum_probs=165.9
Q ss_pred CCCHHHHHHH---HHHHHHHHHHHh-----hccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCC--
Q 004227 154 NLSTEDLEQL---AAELRADIVNSV-----SKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR-- 223 (767)
Q Consensus 154 ~~~~~~L~~l---a~~iR~~i~~~v-----~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~-- 223 (767)
+++.++|.++ -..+|..=-.+. .+.+|..++++|+.-+.++.-..++...|.++- .|++++|.+.+|.
T Consensus 23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~--~YR~h~~~l~~G~~~ 100 (358)
T COG1071 23 ALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFP--TYRDHGHLLARGVPL 100 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeec--ccCccccceecCCCH
Confidence 4555554433 345555444443 246789999999988888877777545698887 9999999999997
Q ss_pred hHHhHHH--HhcC---CCCCCCCCCCCCCCCC-CCcccchhHHHHHHHHHHHHHcCCCC-eEEEEEcCCcccCcchHHHH
Q 004227 224 RSRMNTM--RKTS---GLAGFPKREESVHDAF-GAGHSSTSISAGLGMAVARDILGKNN-NVISVIGDGAMTAGQAYEAM 296 (767)
Q Consensus 224 ~~~l~tl--r~~g---gl~G~p~~~es~~~~~-g~G~~G~~ls~A~G~AlA~kl~g~~~-~Vv~viGDGal~eG~~~EAl 296 (767)
.+.|..+ |+.| |..+..+....+...+ +.|.+|++++.|+|+|+|.|++++++ +++|++|||+.++|.+||+|
T Consensus 101 ~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal 180 (358)
T COG1071 101 KEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL 180 (358)
T ss_pred HHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHH
Confidence 3555555 3332 2111112112222333 57999999999999999999999555 99999999999999999999
Q ss_pred HHHHHcCCCEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 004227 297 NNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (767)
Q Consensus 297 n~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~ 375 (767)
|+|+.|++|+||+|+||++ +|+|...+.. .+.+..|
T Consensus 181 N~A~v~klPvvf~ieNN~yAiSvp~~~q~~--------------------------------------~~~~~~r----- 217 (358)
T COG1071 181 NFAAVWKLPVVFVIENNQYAISVPRSRQTA--------------------------------------AEIIAAR----- 217 (358)
T ss_pred HHHHHhcCCEEEEEecCCceeecchhhccc--------------------------------------chhHHhh-----
Confidence 9999999999999999996 6654432110 0122224
Q ss_pred hhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcC--CCCCcEEEEEEecCCCCCChh
Q 004227 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGKGYPPA 437 (767)
Q Consensus 376 r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~--~~~~P~lI~v~T~KG~G~~~a 437 (767)
..+||+..+ .|||+|+.+++++.++|.++ .+.+|++|++.|.+-.|.+..
T Consensus 218 -----------a~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~s 269 (358)
T COG1071 218 -----------AAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTS 269 (358)
T ss_pred -----------hhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCC
Confidence 678899988 68999999998887765532 367999999999998877754
No 46
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.90 E-value=1.8e-22 Score=221.07 Aligned_cols=229 Identities=21% Similarity=0.240 Sum_probs=166.5
Q ss_pred cccCCCCCHHHHHHHH-H--HHHHHHHHHhh-----ccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHH
Q 004227 149 PIHMKNLSTEDLEQLA-A--ELRADIVNSVS-----KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKIL 220 (767)
Q Consensus 149 p~~~k~~~~~~L~~la-~--~iR~~i~~~v~-----~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l 220 (767)
+.|.++++.++|.++= . .+|..=-.+.. +..|+++++.|+.-+.+++-..+ .|+|.++. .|++++|.+.
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la 87 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLL-AETDYVCS--TYRDHVHALS 87 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhC-CCCCEEEc--ccccHHHHHH
Confidence 3667778877765543 2 22322222221 34588999999988877776666 56798888 9999999999
Q ss_pred hCC--hHHhHHH--HhcC---CCCCCCCCCCCCCCCC-CCcccchhHHHHHHHHHHHHHcC-------CCCeEEEEEcCC
Q 004227 221 TGR--RSRMNTM--RKTS---GLAGFPKREESVHDAF-GAGHSSTSISAGLGMAVARDILG-------KNNNVISVIGDG 285 (767)
Q Consensus 221 ~G~--~~~l~tl--r~~g---gl~G~p~~~es~~~~~-g~G~~G~~ls~A~G~AlA~kl~g-------~~~~Vv~viGDG 285 (767)
.|. .+.|..+ |..| |..|..+....+...+ +.|++|.++|+|+|+|+|.|+++ ++++|+|++|||
T Consensus 88 ~G~~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDG 167 (341)
T CHL00149 88 KGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDG 167 (341)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCc
Confidence 996 3555555 2222 3333333333334433 46999999999999999999987 589999999999
Q ss_pred cccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCch
Q 004227 286 AMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQT 364 (767)
Q Consensus 286 al~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~ 364 (767)
++++|++||+||+|+.+++|+||||.||++ +++++..+.. .
T Consensus 168 a~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~--------------------------------------~ 209 (341)
T CHL00149 168 TTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTS--------------------------------------I 209 (341)
T ss_pred hhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeC--------------------------------------C
Confidence 999999999999999999999999999994 5554322110 0
Q ss_pred HHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH----HHHHhHcCCCCCcEEEEEEecCCCCCChh
Q 004227 365 HEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT----IFQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (767)
Q Consensus 365 ~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~----al~~a~~~~~~~P~lI~v~T~KG~G~~~a 437 (767)
.++.. ++++||+..+ .|||+|+.++.+ +++++++ .++|++|++.|.+..|.+..
T Consensus 210 ~d~a~----------------~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR~~gHs~~ 267 (341)
T CHL00149 210 PEIHK----------------KAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYRFRGHSLA 267 (341)
T ss_pred ccHHH----------------HHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEecCCCcCCC
Confidence 23333 3899999987 799999987664 4445554 57899999999999988754
No 47
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.89 E-value=3.1e-22 Score=220.17 Aligned_cols=198 Identities=21% Similarity=0.269 Sum_probs=149.8
Q ss_pred cCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCC--hHHhHHH--HhcC---CCCCCCCCCCCCCCCC
Q 004227 178 TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTM--RKTS---GLAGFPKREESVHDAF 250 (767)
Q Consensus 178 ~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~--~~~l~tl--r~~g---gl~G~p~~~es~~~~~ 250 (767)
..|+.+.+.|+.-+.+++-..+ .|+|.++. .|+.++|.+..|. .+.|..+ |..| |..|..+....+...+
T Consensus 58 i~g~~~~~~GqEA~~vg~~~aL-~~~D~~~~--~yR~hg~~la~G~~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~ 134 (362)
T PLN02269 58 IRGFCHLYDGQEAVAVGMEAAI-TKEDAIIT--AYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFY 134 (362)
T ss_pred cccccCCCCChHHHHHHHHHhc-CCCCEEEe--chhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCcccccchhcCcc
Confidence 3588999999988887776666 46898888 8999999999997 3445554 3333 3344333323334443
Q ss_pred -CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCC
Q 004227 251 -GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPAT 328 (767)
Q Consensus 251 -g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~ 328 (767)
++|++|+++|.|+|+|+|.|+++++++++|++|||++++|.+|||||+|+.|++|++|||+||++ +|+|+..+..
T Consensus 135 ~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~--- 211 (362)
T PLN02269 135 GGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAAK--- 211 (362)
T ss_pred ccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhcc---
Confidence 47999999999999999999999999999999999999999999999999999999999999995 4443322110
Q ss_pred cchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 329 ~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
...+.. ++++...+ .|||+|+.++.+
T Consensus 212 -----------------------------------~~~~~~------------------~~~~~p~~-~VDG~D~~av~~ 237 (362)
T PLN02269 212 -----------------------------------SPAYYK------------------RGDYVPGL-KVDGMDVLAVKQ 237 (362)
T ss_pred -----------------------------------chHHHH------------------hhcCCCeE-EECCCCHHHHHH
Confidence 011111 22344444 689999999999
Q ss_pred HHHHhHc--CCCCCcEEEEEEecCCCCCCh
Q 004227 409 IFQRVKE--MPAPGPVLIHVVTEKGKGYPP 436 (767)
Q Consensus 409 al~~a~~--~~~~~P~lI~v~T~KG~G~~~ 436 (767)
+++++.+ +. ++|++|++.|.+-.|.+.
T Consensus 238 a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~ 266 (362)
T PLN02269 238 ACKFAKEHALS-NGPIVLEMDTYRYHGHSM 266 (362)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCcCCCcCC
Confidence 9987654 23 789999999999988764
No 48
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.89 E-value=1.1e-21 Score=211.20 Aligned_cols=202 Identities=23% Similarity=0.306 Sum_probs=153.3
Q ss_pred hccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCC--hHHhHHH--HhcC---CCCCCCCCCC-CCC
Q 004227 176 SKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTM--RKTS---GLAGFPKREE-SVH 247 (767)
Q Consensus 176 ~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~--~~~l~tl--r~~g---gl~G~p~~~e-s~~ 247 (767)
.+..|+..++.|+.-+.+++-..+ +|+|.++. .|+++++.+.+|. .+.|..+ |..| |..|..+... ...
T Consensus 22 g~~~~~~~~~~GqEa~~vg~~~~l-~~~D~~~~--~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~G~~g~~h~~~~~~~ 98 (293)
T cd02000 22 GKIGGFYHLSIGQEAVAVGVAAAL-RPGDWVFP--TYRDHGHALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKN 98 (293)
T ss_pred CccccccCCCCChHHHHHHHHHHC-CCCCEEEe--cchhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCCCchhcC
Confidence 345677889999999988887777 47898876 9999999999997 3445444 2222 2222222211 223
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCC
Q 004227 248 DAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGP 326 (767)
Q Consensus 248 ~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~ 326 (767)
...+.|++|.++|+|+|+|+|.++.+++++|||++|||++++|.+||+||+|+.+++|+++||+||++ ++.++..+.
T Consensus 99 ~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~-- 176 (293)
T cd02000 99 FFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQT-- 176 (293)
T ss_pred ccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHh--
Confidence 34568999999999999999999999999999999999999999999999999999999999999984 222111000
Q ss_pred CCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHH
Q 004227 327 ATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDL 406 (767)
Q Consensus 327 ~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l 406 (767)
. .++...++++||+..+ .|||+|++++
T Consensus 177 ------------------------------------~----------------~~~~~~~a~a~G~~~~-~Vdg~d~~~v 203 (293)
T cd02000 177 ------------------------------------A----------------GTSIADRAAAYGIPGI-RVDGNDVLAV 203 (293)
T ss_pred ------------------------------------C----------------CccHHHHHHhCCCCEE-EECCCCHHHH
Confidence 0 0122334899999987 7999999998
Q ss_pred HHHHHHhHcC--CCCCcEEEEEEecCCCCCC
Q 004227 407 VTIFQRVKEM--PAPGPVLIHVVTEKGKGYP 435 (767)
Q Consensus 407 ~~al~~a~~~--~~~~P~lI~v~T~KG~G~~ 435 (767)
.++++++.+. ..++|++|++.|.+..|.+
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs 234 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEAVTYRLGGHS 234 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEeccCCCC
Confidence 8887765531 2578999999999999877
No 49
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.88 E-value=2.1e-21 Score=217.62 Aligned_cols=200 Identities=21% Similarity=0.323 Sum_probs=151.9
Q ss_pred cCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCC--hHHhHHH--HhcC---CCCCCCCCCCCCCCCC
Q 004227 178 TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTM--RKTS---GLAGFPKREESVHDAF 250 (767)
Q Consensus 178 ~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~--~~~l~tl--r~~g---gl~G~p~~~es~~~~~ 250 (767)
..|+.+.+.|+.-+.+++-..+ .|.|+++. .|+.++|.+..|. ++.|..+ +..| |..|..+....+...+
T Consensus 114 i~g~~h~~~GqEA~~vg~~~aL-~~~D~v~~--~yR~h~~~La~G~~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~ 190 (433)
T PLN02374 114 MFGFVHLYNGQEAVSTGFIKLL-KKDDSVVS--TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL 190 (433)
T ss_pred ceeccCCCCCcHHHHHHHHHHc-CCCCEEEc--cCcChHHhhhcCCCHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCC
Confidence 3488888999988888776666 55798877 9999999999996 3555555 2222 2333333222233333
Q ss_pred -CCcccchhHHHHHHHHHHHHHcC-------CCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-Cccccc
Q 004227 251 -GAGHSSTSISAGLGMAVARDILG-------KNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTA 321 (767)
Q Consensus 251 -g~G~~G~~ls~A~G~AlA~kl~g-------~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~ 321 (767)
+.|++|.++|.|+|+|+|.|+++ ++++|||++|||++++|++||+||+|+.|++|+||||+||++ ++.++.
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~ 270 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 270 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceee
Confidence 46899999999999999999986 488999999999999999999999999999999999999984 555443
Q ss_pred cCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCC
Q 004227 322 TLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGH 401 (767)
Q Consensus 322 ~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh 401 (767)
.+.. ..+++.+ +++||+..+ .|||+
T Consensus 271 ~~t~--------------------------------------~~dia~~----------------A~a~G~~~~-~VDG~ 295 (433)
T PLN02374 271 RATS--------------------------------------DPEIWKK----------------GPAFGMPGV-HVDGM 295 (433)
T ss_pred eccC--------------------------------------CCCHHHH----------------HHhcCCcEE-EECCC
Confidence 3210 0123333 799999988 79999
Q ss_pred CHHHHHHH----HHHhHcCCCCCcEEEEEEecCCCCCChh
Q 004227 402 NVEDLVTI----FQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (767)
Q Consensus 402 di~~l~~a----l~~a~~~~~~~P~lI~v~T~KG~G~~~a 437 (767)
|+.+++++ ++.+++ .++|++|++.|.+.+|.+..
T Consensus 296 D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR~~GHs~~ 333 (433)
T PLN02374 296 DVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHSLA 333 (433)
T ss_pred CHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEecCCcCCC
Confidence 99987754 455554 57999999999999998754
No 50
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.87 E-value=7.2e-21 Score=206.75 Aligned_cols=202 Identities=24% Similarity=0.344 Sum_probs=150.8
Q ss_pred ccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCC--hHHhHHH--HhcC---CCCCCCCCCCCCCCC
Q 004227 177 KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTM--RKTS---GLAGFPKREESVHDA 249 (767)
Q Consensus 177 ~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~--~~~l~tl--r~~g---gl~G~p~~~es~~~~ 249 (767)
+..|+.+++.|+.-+.+++-..+ .|+|.++. .|+.+++.+..|. .+.|..+ |..| |..|..+....+...
T Consensus 29 ~~~~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la~G~~~~~~~~~~~g~~~g~~~Gr~g~~h~~~~~~~~ 105 (315)
T TIGR03182 29 KIGGFCHLYIGQEAVAVGLIAAL-KPDDYVIT--SYRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNF 105 (315)
T ss_pred ccccccCCCCChHHHHHHHHHhC-CCCCEEEe--chhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCchhhCc
Confidence 34588888999988877776666 56798887 9999999999996 3444444 2222 222322222222333
Q ss_pred C-CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCC
Q 004227 250 F-GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPA 327 (767)
Q Consensus 250 ~-g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~ 327 (767)
+ +.|.+|.++|+|+|+|+|.++++++++|+|++|||++++|.+||+||+|+.+++|+++||.||++ ++.++..+.
T Consensus 106 ~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s~~~~~~~--- 182 (315)
T TIGR03182 106 YGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVERSS--- 182 (315)
T ss_pred ccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccccCCHHHHh---
Confidence 3 46999999999999999999999999999999999999999999999999999999999999974 332211100
Q ss_pred CcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHH
Q 004227 328 TPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (767)
Q Consensus 328 ~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~ 407 (767)
...++ ..++++||+..+ .|||+|+.++.
T Consensus 183 -----------------------------------~~~~~----------------a~~A~a~G~~~~-~Vdg~d~~av~ 210 (315)
T TIGR03182 183 -----------------------------------SVTDL----------------YKRGESFGIPGE-RVDGMDVLAVR 210 (315)
T ss_pred -----------------------------------CCcCH----------------HHHHHhCCCCEE-EECCCCHHHHH
Confidence 00122 234899999987 79999999888
Q ss_pred HHHHHhHc--CCCCCcEEEEEEecCCCCCCh
Q 004227 408 TIFQRVKE--MPAPGPVLIHVVTEKGKGYPP 436 (767)
Q Consensus 408 ~al~~a~~--~~~~~P~lI~v~T~KG~G~~~ 436 (767)
++++++.+ ...++|++|++.|.+-.|...
T Consensus 211 ~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 241 (315)
T TIGR03182 211 EAAKEAVERARSGKGPILLEMKTYRFRGHSM 241 (315)
T ss_pred HHHHHHHHHHHccCCCEEEEEeCCcCCCCCC
Confidence 77776542 135799999999999888764
No 51
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.85 E-value=1.1e-20 Score=203.94 Aligned_cols=203 Identities=23% Similarity=0.284 Sum_probs=148.9
Q ss_pred ccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCC--hHHhHHHHhc-CCCCCCCC-CC--CCCCCC-
Q 004227 177 KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTMRKT-SGLAGFPK-RE--ESVHDA- 249 (767)
Q Consensus 177 ~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~--~~~l~tlr~~-ggl~G~p~-~~--es~~~~- 249 (767)
+..|..+++.|+.-+.+++...+ .|.|+++. .|++.++.+..|. .+.|..+... .+.+|..+ .. ......
T Consensus 21 ~~~g~~~~~~GqEa~~v~~~~~l-~~~D~v~~--~yR~~~~~la~g~~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~ 97 (300)
T PF00676_consen 21 GRFGFYHLSAGQEAIQVAAAAAL-RPGDWVFP--YYRDHGHALARGIDLEEIFAELLGKAKGHGGGRHPLHFSDKGLNIL 97 (300)
T ss_dssp TSSSCTT-TTTCHHHHHHHHHHS-CTTSEEEE--CSTTHHHHHHTTT-HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBE
T ss_pred CCeEEecchHHHHHHHHHHHHhc-cCCCEEEe--cccchhhhhhccccccchhHHhcCcccCCCCCccccccccccceee
Confidence 45688889999988888777666 56699887 6999999999986 3445555221 22222222 11 122122
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCC
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPAT 328 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~ 328 (767)
.+.+++|.++|.|+|+|+|.|+++++..++|++|||+.++|.+|||||+|+.|++|+||||+||++ +|+|+..+...
T Consensus 98 ~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~-- 175 (300)
T PF00676_consen 98 GASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTAS-- 175 (300)
T ss_dssp EEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSS--
T ss_pred eccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccc--
Confidence 357999999999999999999999999999999999999999999999999999999999999996 66554432110
Q ss_pred cchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 329 ~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
.+...++++||+..+ .|||+|+.++.+
T Consensus 176 ----------------------------------------------------~~~~~~a~~~gip~~-~VDG~D~~av~~ 202 (300)
T PF00676_consen 176 ----------------------------------------------------PDIADRAKGYGIPGI-RVDGNDVEAVYE 202 (300)
T ss_dssp ----------------------------------------------------STSGGGGGGTTSEEE-EEETTSHHHHHH
T ss_pred ----------------------------------------------------cchhhhhhccCCcEE-EECCEeHHHHHH
Confidence 111223789999987 799999999888
Q ss_pred HHHHhHcC--CCCCcEEEEEEecCCCCCChh
Q 004227 409 IFQRVKEM--PAPGPVLIHVVTEKGKGYPPA 437 (767)
Q Consensus 409 al~~a~~~--~~~~P~lI~v~T~KG~G~~~a 437 (767)
++++|.+. ...+|++|++.|.+-.|....
T Consensus 203 a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~ 233 (300)
T PF00676_consen 203 AAKEAVEYARAGKGPVLIEAVTYRLRGHSES 233 (300)
T ss_dssp HHHHHHHHHHTTT--EEEEEEE--SS-SSTT
T ss_pred HHHHHHHHHhcCCCCEEEEEeeccCCCCCCC
Confidence 87765432 368999999999998887654
No 52
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.84 E-value=1.5e-19 Score=198.37 Aligned_cols=194 Identities=22% Similarity=0.275 Sum_probs=145.5
Q ss_pred CCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCCh--HHhHHHHhcCCCCCCCCCCCCCCCCCC-Ccccc
Q 004227 180 GHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRR--SRMNTMRKTSGLAGFPKREESVHDAFG-AGHSS 256 (767)
Q Consensus 180 GH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~~--~~l~tlr~~ggl~G~p~~~es~~~~~g-~G~~G 256 (767)
|..+++.|+.-+.+++-..+ +|+|+++. .|++++|.+..|.. +.|..+. |.-.|... ......+| +|.+|
T Consensus 53 ~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~h~~~l~~G~~~~~~~ae~~--g~~~g~~~--~~~~~~~g~~~~vG 125 (341)
T TIGR03181 53 GTYAPNLGQEAAQVGSALAL-RKDDWVFP--SYRDHAAMLARGVPLVEILLYWR--GDERGSWD--PEGVNILPPNIPIG 125 (341)
T ss_pred ecccCCCChHHHHHHHHHHc-CCCCEEEc--chhhHHHHHHcCCCHHHHHHHhc--CcCcCCCC--chhcCccCCCchHh
Confidence 66788999988888776677 46898877 99999999999973 4444441 11112111 12334444 58899
Q ss_pred hhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCCcchhhhH
Q 004227 257 TSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSS 335 (767)
Q Consensus 257 ~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~ 335 (767)
.++|.|+|+|+|.|+.+++++|+|++|||++++|.+||+||+|+.+++|+++||.||++ +++++..+.
T Consensus 126 ~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~----------- 194 (341)
T TIGR03181 126 TQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQT----------- 194 (341)
T ss_pred cchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhh-----------
Confidence 99999999999999999999999999999999999999999999999999999999985 232221100
Q ss_pred HHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHH----
Q 004227 336 ALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ---- 411 (767)
Q Consensus 336 ~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~---- 411 (767)
-.++...++++||+.++ .|||+|..++..+++
T Consensus 195 -------------------------------------------~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~ 230 (341)
T TIGR03181 195 -------------------------------------------AAPTLAQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVE 230 (341)
T ss_pred -------------------------------------------CCcCHHHHHhhCCCCEE-EECCCCHHHHHHHHHHHHH
Confidence 00122334899999987 799999976665554
Q ss_pred HhHcCCCCCcEEEEEEecCCCCCChh
Q 004227 412 RVKEMPAPGPVLIHVVTEKGKGYPPA 437 (767)
Q Consensus 412 ~a~~~~~~~P~lI~v~T~KG~G~~~a 437 (767)
++++ .++|++|++.|.+-.|....
T Consensus 231 ~a~~--~~gP~lIev~t~R~~gH~~~ 254 (341)
T TIGR03181 231 RARS--GGGPTLIEAVTYRLGPHTTA 254 (341)
T ss_pred HHHc--CCCCEEEEEEeecCCCCCCC
Confidence 4544 57999999999998876643
No 53
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.80 E-value=6.9e-18 Score=185.92 Aligned_cols=221 Identities=17% Similarity=0.130 Sum_probs=168.0
Q ss_pred hhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCCh
Q 004227 501 FQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGA 580 (767)
Q Consensus 501 f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~ 580 (767)
+.+++...|++ .-+|.+++++|.|+|++|.|.+++|.+.++..+++++ ..++..++|++++...++..+ -|.|+...
T Consensus 43 ~~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~e~P~v~v~v~R~~p~-~g~t~~eq 119 (352)
T PRK07119 43 RLPEVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGI-SYLAGAELPCVIVNIMRGGPG-LGNIQPSQ 119 (352)
T ss_pred HHHHhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHH-HHHHHccCCEEEEEeccCCCC-CCCCcchh
Confidence 33445567788 8999999999999999999999999999999999997 667899999887775444233 34588888
Q ss_pred hHHHHhhc-----CCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCCC---CcccccCC------CCCCCCccc
Q 004227 581 FDVTFMSC-----LPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN---GIGAVLPP------NNKGTPLEI 643 (767)
Q Consensus 581 ~Dla~lr~-----iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~~---~~~~~~p~------~~~~~~~~i 643 (767)
.|+.+.+. --++.|++|+|++|++++...|++. ..-|++++.+..- ..++.+|+ +.... ...
T Consensus 120 ~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~-~~~ 198 (352)
T PRK07119 120 GDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDW-AVT 198 (352)
T ss_pred HHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCC-ccC
Confidence 88766532 2248899999999999999999985 3459999876321 00111111 00000 000
Q ss_pred Cce--------------------------------------e-EeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEE
Q 004227 644 GKG--------------------------------------R-ILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVA 684 (767)
Q Consensus 644 gk~--------------------------------------~-vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VI 684 (767)
+.. . .-.++.|++||++|+++..+++|++.|+++|++++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi 278 (352)
T PRK07119 199 GTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKVGLF 278 (352)
T ss_pred CCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEE
Confidence 000 0 0014679999999999999999999999999999999
Q ss_pred EcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 685 DARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 685 dl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
+++++||||.+.|+++++++++|+|+|++ .|-+..+|...+
T Consensus 279 ~~~~l~Pfp~~~i~~~l~~~k~VivvE~n-~g~l~~ei~~~~ 319 (352)
T PRK07119 279 RPITLWPFPEKALEELADKGKGFLSVEMS-MGQMVEDVRLAV 319 (352)
T ss_pred eeceecCCCHHHHHHHHhCCCEEEEEeCC-ccHHHHHHHHHh
Confidence 99999999999999999999999999998 466777777544
No 54
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.80 E-value=5.2e-18 Score=199.27 Aligned_cols=235 Identities=18% Similarity=0.187 Sum_probs=177.0
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhh--cCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVD--LQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a--~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
+-++....+|..++.+|.|+|++|.|.+++|.+..+.++.|++.+ ++ -.++|++++...+ .| .++|+....|..
T Consensus 46 ~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~e~l~~-~~~~g~~~~iV~~~~~~--~g-p~~~~~~q~d~~ 121 (595)
T TIGR03336 46 GVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAADPLMT-LAYTGVKGGLVVVVADD--PS-MHSSQNEQDTRH 121 (595)
T ss_pred cEEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhHHHhhh-hhhhcCcCceEEEEccC--CC-CccchhhHhHHH
Confidence 456778889999999999999999999999999999999999865 45 3467776665332 12 358888888877
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCCCC---cccccCCC---C--CCCCcccC---------
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGNG---IGAVLPPN---N--KGTPLEIG--------- 644 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~~~---~~~~~p~~---~--~~~~~~ig--------- 644 (767)
+.+. .++.|+.|+|.+|++++...|++. ..-|++++++..-. ..+.+++. . .++..+..
T Consensus 122 ~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (595)
T TIGR03336 122 YAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIA 200 (595)
T ss_pred HHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhH
Confidence 6665 588899999999999999999984 55699998863210 01111110 0 00000000
Q ss_pred -------------------c--e-eEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc
Q 004227 645 -------------------K--G-RILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN 702 (767)
Q Consensus 645 -------------------k--~-~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~ 702 (767)
. . .+..+++|++||++|+++..+++|++.| |++++|++++++||||++.|+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~~ 277 (595)
T TIGR03336 201 RVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFLS 277 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHHh
Confidence 0 0 1112357999999999999999988765 9999999999999999999999999
Q ss_pred cCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccccccc
Q 004227 703 EHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCRLLS 755 (767)
Q Consensus 703 ~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~~~~ 755 (767)
+++.|||+|||. +++++.+...+.+.+ .+++++|+||.|++..+-|+
T Consensus 278 ~~~~vivvEe~~-~~~~~~~~~~~~~~~-----~~v~~~G~~d~fi~~~~~Ld 324 (595)
T TIGR03336 278 GVEEVLVVEELE-PVVEEQVKALAGTAG-----LNIKVHGKEDGFLPREGELN 324 (595)
T ss_pred cCCeEEEEeCCc-cHHHHHHHHHHHhcC-----CCeEEecccCCccCcccCcC
Confidence 999999999998 666666666665544 26889999999999755554
No 55
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.80 E-value=1.1e-18 Score=179.39 Aligned_cols=167 Identities=22% Similarity=0.278 Sum_probs=124.5
Q ss_pred CCChH---HHHHHHhCC--------h---HHhH-HHHh---cCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHH
Q 004227 210 VGHQA---YVHKILTGR--------R---SRMN-TMRK---TSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDI 271 (767)
Q Consensus 210 ~GH~~---y~~~~l~G~--------~---~~l~-tlr~---~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl 271 (767)
.||.+ |+.++|.|. + +.|. .||| .||+++||.. +.++....+|++|++|+.|+|+|+
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~---- 76 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF---- 76 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCCCCCCCcc-cCCCeeecccchhhHHHHHHHhhh----
Confidence 58888 788889992 2 1254 4566 4568889886 567777889999999999999974
Q ss_pred cCCCCeEEEEEcCCcccCcch---HHHHHHHHHcC-CCEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhH
Q 004227 272 LGKNNNVISVIGDGAMTAGQA---YEAMNNAGFLD-ANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNF 346 (767)
Q Consensus 272 ~g~~~~Vv~viGDGal~eG~~---~EAln~A~~~~-~nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~ 346 (767)
++++.+|+|++||||+++|.+ ||+.+++...+ .||+.|+++|++ ++.||.... .
T Consensus 77 d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~------~--------------- 135 (227)
T cd02011 77 DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILAR------I--------------- 135 (227)
T ss_pred cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccc------c---------------
Confidence 678999999999999999996 99988988655 999999999995 655543210 0
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHH--------------
Q 004227 347 RKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR-------------- 412 (767)
Q Consensus 347 ~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~-------------- 412 (767)
+.+++.++ |++|||..+ .|||||++++.+++++
T Consensus 136 ----------------~~e~l~~~----------------~~~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i~~~~~ 182 (227)
T cd02011 136 ----------------SHEELEAL----------------FRGYGYEPY-FVEGDDPETMHQAMAATLDWAIEEIKAIQK 182 (227)
T ss_pred ----------------CchhHHHH----------------HHhCCCceE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12455665 999999987 6899999876655432
Q ss_pred -hHcC-CCCCc--EEEEEEecCCCCCC
Q 004227 413 -VKEM-PAPGP--VLIHVVTEKGKGYP 435 (767)
Q Consensus 413 -a~~~-~~~~P--~lI~v~T~KG~G~~ 435 (767)
|++. ...+| -+|+.+|.||+.-|
T Consensus 183 ~~~~~~~~~~~~wp~~~~~~~kg~~~p 209 (227)
T cd02011 183 RAREGGDASRPRWPMIVLRTPKGWTGP 209 (227)
T ss_pred HHHhCCCCCCCCCCEEEEeCCCCCCCC
Confidence 2211 12356 38999999999655
No 56
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.79 E-value=6.6e-19 Score=184.71 Aligned_cols=197 Identities=24% Similarity=0.349 Sum_probs=150.0
Q ss_pred cCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCC--hHHhHHH--HhcC---CCCCCCCCCCCCCCCC
Q 004227 178 TGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTM--RKTS---GLAGFPKREESVHDAF 250 (767)
Q Consensus 178 ~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~--~~~l~tl--r~~g---gl~G~p~~~es~~~~~ 250 (767)
..|.-+.+-|+..+.+.+-..+ ++.|-+|. ..+|+++.+++|. ++-|.+| ||.| |..|..|.... .++
T Consensus 87 IRGFCHLy~GQEAvavGme~ai-t~~D~iIt--sYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~Fy 161 (394)
T KOG0225|consen 87 IRGFCHLYDGQEAVAVGMEAAI-TKSDSIIT--SYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFY 161 (394)
T ss_pred hceeeeecccHHHHHHHHHHhc-cCCCceEE--EeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--ccc
Confidence 5688888999999888886666 66799998 6788899999996 5778887 6665 45555554211 133
Q ss_pred -CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCC
Q 004227 251 -GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPAT 328 (767)
Q Consensus 251 -g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~ 328 (767)
|.|.+|.++|.+.|+|+|.|+++++..++++.|||+.++|++|||+|+|..|++|+||||+||++ +-+++.
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~------- 234 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAE------- 234 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchh-------
Confidence 68999999999999999999999999999999999999999999999999999999999999986 221110
Q ss_pred cchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 329 ~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
...+-.+-|.|+-+-| | + -|||.|+-.+.+
T Consensus 235 -------------------------------------Rasa~teyykRG~yiP---------G---l-~VdGmdvlaVr~ 264 (394)
T KOG0225|consen 235 -------------------------------------RASASTEYYKRGDYIP---------G---L-KVDGMDVLAVRE 264 (394)
T ss_pred -------------------------------------hhhcChHHHhccCCCC---------c---e-EECCcchhhHHH
Confidence 0011112233332111 2 2 489999999999
Q ss_pred HHHHhHcC--CCCCcEEEEEEecCCCCCCh
Q 004227 409 IFQRVKEM--PAPGPVLIHVVTEKGKGYPP 436 (767)
Q Consensus 409 al~~a~~~--~~~~P~lI~v~T~KG~G~~~ 436 (767)
+.+.|++. .+.+|.+++..|.+-.|.+-
T Consensus 265 a~KfA~~~~~~g~GPilmE~~TYRy~GHSm 294 (394)
T KOG0225|consen 265 ATKFAKKYALEGKGPILMEMDTYRYHGHSM 294 (394)
T ss_pred HHHHHHHHHhcCCCCEEEEEeeeeeccccc
Confidence 99988764 45799999999987666553
No 57
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.78 E-value=1.8e-17 Score=183.98 Aligned_cols=240 Identities=16% Similarity=0.143 Sum_probs=172.5
Q ss_pred CCcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 506 PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 506 P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
...|+++- +|.+++++|.|+|++|.|.+++|.+..+..+.+++ ..++..++|++++...++..+.+-||++...|+..
T Consensus 48 ~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~-~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~ 125 (376)
T PRK08659 48 GGVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENI-GYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQ 125 (376)
T ss_pred CCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHH-HHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHH
Confidence 35677776 99999999999999999999999999988999987 45567789977776444324445578888888766
Q ss_pred hh-----cCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCCC---CcccccCCC-----------------CC
Q 004227 586 MS-----CLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN---GIGAVLPPN-----------------NK 637 (767)
Q Consensus 586 lr-----~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~~---~~~~~~p~~-----------------~~ 637 (767)
.+ .. ++.|++|+|++|+.++...|++. .+.|++++.+..- ...+++|+. ..
T Consensus 126 ~~~~~hgd~-~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 204 (376)
T PRK08659 126 ARWGTHGDH-PIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAYK 204 (376)
T ss_pred HhcccCCCc-CcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCccccC
Confidence 55 23 36799999999999999999984 4469998775310 000000100 00
Q ss_pred CCC-----cc----cCce--------------------------------------------eEe-ecCCcEEEEEechh
Q 004227 638 GTP-----LE----IGKG--------------------------------------------RIL-MEGDRVAILGYGSI 663 (767)
Q Consensus 638 ~~~-----~~----igk~--------------------------------------------~vl-~eG~dvtIva~Gs~ 663 (767)
.+. ++ .+.+ ... .++.|++||++|++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs~ 284 (376)
T PRK08659 205 PFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGSV 284 (376)
T ss_pred CCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCcc
Confidence 000 00 0100 000 14679999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEec
Q 004227 664 VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSL 743 (767)
Q Consensus 664 v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl 743 (767)
...+++|++.|+++|++++++++++++|||.+.|++++++++.|+|||+| .|.+..++...+... .
T Consensus 285 ~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~-~g~l~~el~~~~~~~------~------- 350 (376)
T PRK08659 285 ARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN-LGQMSLEVERVVNGR------A------- 350 (376)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC-HHHHHHHHHHHhCCC------C-------
Confidence 99999999999999999999999999999999999999999999999999 455555555444211 1
Q ss_pred CCcccccccccccCcccce
Q 004227 744 IQKLETDCRLLSFPSPFIY 762 (767)
Q Consensus 744 ~D~f~~~~~~~~~~~~~~~ 762 (767)
+..++-.++...|..+.|+
T Consensus 351 ~~~~i~~~~G~~~~~~ei~ 369 (376)
T PRK08659 351 KVEGINKIGGELITPEEIL 369 (376)
T ss_pred CeeEEeccCCCcCCHHHHH
Confidence 1234555566666655554
No 58
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.78 E-value=4.1e-20 Score=174.22 Aligned_cols=108 Identities=29% Similarity=0.470 Sum_probs=99.6
Q ss_pred CceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHH
Q 004227 644 GKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHV 722 (767)
Q Consensus 644 gk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I 722 (767)
||+.++++|+|++|||||+++..|++|++.|+++||+++|+|++|++|||++.+.++++++++++|+||++ .||||++|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999998999999999997 79999999
Q ss_pred HHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 723 CHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 723 ~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
++++.++++.....+++++|.||.|+++.
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~ 109 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHG 109 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSS
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCc
Confidence 99999988743346899999999999975
No 59
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.77 E-value=8.3e-17 Score=180.61 Aligned_cols=217 Identities=17% Similarity=0.188 Sum_probs=169.1
Q ss_pred cEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhh
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMS 587 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr 587 (767)
.|+.+ =+|.+++++|.|+|.+|.|.+++|.+..+..+.|.+ ..++..++|++++...+|+.+ .-+++.+..|+...+
T Consensus 58 ~~vq~-E~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aa~~~~P~V~~~~~R~~~~-~~~i~~d~~D~~~~r 134 (407)
T PRK09622 58 EFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGLALMVEVL-YQASGMRLPIVLNLVNRALAA-PLNVNGDHSDMYLSR 134 (407)
T ss_pred EEEee-ccHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHH-HHHHHhhCCEEEEEeccccCC-CcCCCchHHHHHHHh
Confidence 46554 499999999999999999999999999999999997 566899999888876666433 478999999987766
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhhC-----CCCEEEEecCCC----CcccccCCC---------CCCC--------Cc
Q 004227 588 CLPNMVVMAPSDEAELMHMVATAAVID-----DRPSCFRFPRGN----GIGAVLPPN---------NKGT--------PL 641 (767)
Q Consensus 588 ~iPg~~V~~Psd~~E~~~~l~~A~~~~-----~~P~~irl~r~~----~~~~~~p~~---------~~~~--------~~ 641 (767)
. .++.+++|+|+||+.++...|++.. ..|++++++..- ...+++|+. .+.+ +.
T Consensus 135 ~-~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 213 (407)
T PRK09622 135 D-SGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPV 213 (407)
T ss_pred c-CCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCc
Confidence 4 6899999999999999999999852 579998876331 001111100 0000 00
Q ss_pred ccC--------------------------------------ceeE-e----ecCCcEEEEEechhHHHHHHHHHHHhcCC
Q 004227 642 EIG--------------------------------------KGRI-L----MEGDRVAILGYGSIVQQCVLAANMLKSQD 678 (767)
Q Consensus 642 ~ig--------------------------------------k~~v-l----~eG~dvtIva~Gs~v~~al~Aa~~L~~~G 678 (767)
..+ +.+. . .+++|++||++|+++..+++|++.|+++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G 293 (407)
T PRK09622 214 TYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEG 293 (407)
T ss_pred cCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCC
Confidence 000 0000 0 03578999999999999999999999999
Q ss_pred CcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHh
Q 004227 679 ISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTL 728 (767)
Q Consensus 679 I~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~ 728 (767)
++++++++++++|||.+.+.+++++++.|+|+|++. .||+|..+.+.+..
T Consensus 294 ~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~a 344 (407)
T PRK09622 294 IKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSA 344 (407)
T ss_pred CCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHH
Confidence 999999999999999999999999999999999997 69999877666544
No 60
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.73 E-value=2e-16 Score=175.39 Aligned_cols=216 Identities=17% Similarity=0.182 Sum_probs=163.6
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHh
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFM 586 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~l 586 (767)
..|+.+ =+|.+++++|.|+|++|.|.+++|.+..+..+.+++ ..++..++|++++...++..+.+-||.....|+...
T Consensus 48 ~~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~-~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~~~ 125 (375)
T PRK09627 48 GTFIQM-EDEISGISVALGASMSGVKSMTASSGPGISLKAEQI-GLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVNQA 125 (375)
T ss_pred CEEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHH-HHHHhccCCEEEEEeccCCCcCCCCCccchHHHHHH
Confidence 344544 499999999999999999999999999888889987 456889999888764443244455888888888776
Q ss_pred h-----cCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCCC---CcccccCC----------------C---C
Q 004227 587 S-----CLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN---GIGAVLPP----------------N---N 636 (767)
Q Consensus 587 r-----~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~~---~~~~~~p~----------------~---~ 636 (767)
+ ..|.+ |++|+|++|++++...|++. ...|++++.+..- ...+.+|+ . .
T Consensus 126 ~~~~hgd~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (375)
T PRK09627 126 KNPTHGDFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDY 204 (375)
T ss_pred hcCCCCCcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccc
Confidence 6 44544 99999999999999999984 4459998775310 00000100 0 0
Q ss_pred CCCCc------ccC---c-e-------------------------------------------eEe-ecCCcEEEEEech
Q 004227 637 KGTPL------EIG---K-G-------------------------------------------RIL-MEGDRVAILGYGS 662 (767)
Q Consensus 637 ~~~~~------~ig---k-~-------------------------------------------~vl-~eG~dvtIva~Gs 662 (767)
..+.. .++ . + ... .++.|++||++|+
T Consensus 205 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GS 284 (375)
T PRK09627 205 KPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGS 284 (375)
T ss_pred cCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEeCC
Confidence 00000 000 0 0 000 0346899999999
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 663 IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 663 ~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
....+.+|++.|+++|++++++.+++++|||.+.+++.+++.+.|+|+|++. |.|..+|...+
T Consensus 285 t~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~-Gql~~~v~~~~ 347 (375)
T PRK09627 285 VSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM-GQYLEEIERVM 347 (375)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh-HHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998 77888777666
No 61
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.72 E-value=1.1e-15 Score=170.28 Aligned_cols=205 Identities=16% Similarity=0.186 Sum_probs=159.4
Q ss_pred ccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCC
Q 004227 512 VGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPN 591 (767)
Q Consensus 512 ~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg 591 (767)
..=+|.+++++|.|+|++|.|.+++|.+..+..+.|++ ..++..++|++++...++.. ..+++|+...|+.+.+. .+
T Consensus 54 ~~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l-~~aa~~~lPiVi~~~~R~~p-~~~~~~~~q~D~~~~~d-~g 130 (390)
T PRK08366 54 PVESEHSAMAACIGASAAGARAFTATSAQGLALMHEML-HWAAGARLPIVMVDVNRAMA-PPWSVWDDQTDSLAQRD-TG 130 (390)
T ss_pred EeCCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHH-HHHHhcCCCEEEEEeccCCC-CCCCCcchhhHHHHHhh-cC
Confidence 34699999999999999999999999999999999997 45688899988877544433 36799999999877665 58
Q ss_pred cEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCCC----Ccccc----------cCCCCC-------CCCcc-----
Q 004227 592 MVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN----GIGAV----------LPPNNK-------GTPLE----- 642 (767)
Q Consensus 592 ~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~~----~~~~~----------~p~~~~-------~~~~~----- 642 (767)
+.+++|+|+||+.++...|++. ..-|++++++..- ...++ +|+... +.+..
T Consensus 131 ~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~ 210 (390)
T PRK08366 131 WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALA 210 (390)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCC
Confidence 8999999999999999999984 4459998875310 00000 110000 00100
Q ss_pred ---------------------------------cCceeE--ee----cCCcEEEEEechhHHHHHHHHHHHhcCCCcEEE
Q 004227 643 ---------------------------------IGKGRI--LM----EGDRVAILGYGSIVQQCVLAANMLKSQDISVTV 683 (767)
Q Consensus 643 ---------------------------------igk~~v--l~----eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~V 683 (767)
+|+.+. .. ++.|++||++|+....+++|++.|+++|+++++
T Consensus 211 ~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~ 290 (390)
T PRK08366 211 TPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGY 290 (390)
T ss_pred CCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceee
Confidence 111111 11 356899999999999999999999999999999
Q ss_pred EEcccCCCCcHHHHHHHhccCCEEEEEcCCCC-CCHH
Q 004227 684 ADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFG 719 (767)
Q Consensus 684 Idl~slkPlD~e~i~~~~~~~~~vVvvEe~~~-GGlg 719 (767)
+.+++++|||.+.+++++++.+.|+|+|++.. |.+|
T Consensus 291 l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g 327 (390)
T PRK08366 291 AKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEG 327 (390)
T ss_pred EEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCccc
Confidence 99999999999999999999999999999975 6644
No 62
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.70 E-value=9.2e-16 Score=178.79 Aligned_cols=219 Identities=18% Similarity=0.184 Sum_probs=167.9
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHh
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFM 586 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~l 586 (767)
+-.+...-+|.+++++|.|+|++|.|.+++|.+..+..+.|.+ ..++..++|++++...++..+..-||+....|+.+.
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~ 315 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFALMTEAL-GLAGMTETPLVIVDVQRGGPSTGLPTKTEQSDLLFA 315 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhHhHHHH-hHHHhccCCEEEEEcccCCCCCCCCCCccHHHHHHH
Confidence 4556667899999999999999999999999999988999998 566779999888774443244556899999998776
Q ss_pred hcCC----CcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCCC---CcccccCC-----------------CCCCC
Q 004227 587 SCLP----NMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGN---GIGAVLPP-----------------NNKGT 639 (767)
Q Consensus 587 r~iP----g~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~~---~~~~~~p~-----------------~~~~~ 639 (767)
+.-- ++.|++|+|++|+.++...|++. ...|++++.+..- ...+++|+ ....+
T Consensus 316 ~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (562)
T TIGR03710 316 LYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKRY 395 (562)
T ss_pred hcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCCC
Confidence 6421 38899999999999999999984 4459998775210 00000100 00000
Q ss_pred --------Ccc-cCc--e-------------------------------------------eEe-ecCCcEEEEEechhH
Q 004227 640 --------PLE-IGK--G-------------------------------------------RIL-MEGDRVAILGYGSIV 664 (767)
Q Consensus 640 --------~~~-igk--~-------------------------------------------~vl-~eG~dvtIva~Gs~v 664 (767)
+.. .|. . ... .++.|++||++|+..
T Consensus 396 ~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~~ 475 (562)
T TIGR03710 396 ELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGSTY 475 (562)
T ss_pred CcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCCH
Confidence 000 010 0 000 024689999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 665 QQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 665 ~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
..+.+|++.|+++|++++++.+++++|||.+.|++.+++.+.|+|+|++..|.+..+|...+
T Consensus 476 ~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~Gql~~~v~~~~ 537 (562)
T TIGR03710 476 GAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNATGQLAKLLRAET 537 (562)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998888888887766
No 63
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.69 E-value=3.1e-15 Score=166.88 Aligned_cols=213 Identities=17% Similarity=0.207 Sum_probs=165.0
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCc
Q 004227 513 GIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNM 592 (767)
Q Consensus 513 GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~ 592 (767)
.=+|++++++|.|+|++|.|.+++|.+..+..+.|++ ..++..++|++++...+++ +...++|++..|+...|. -++
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aag~~lP~V~vv~~R~~-~~p~~i~~d~~D~~~~rd-~g~ 132 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFTATASQGLALMHEVL-FIAAGMRLPIVMAIGNRAL-SAPINIWNDWQDTISQRD-TGW 132 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHH-HHHHHccCCEEEEECCCCC-CCCCCcCcchHHHHhccc-cCe
Confidence 4699999999999999999999999999999999997 5679999999988755553 345578888888766665 458
Q ss_pred EEEecCCHHHHHHHHHHHHhhCC-----CCEEEEecCC----CCcccccCCCC---------C--------CCCcc----
Q 004227 593 VVMAPSDEAELMHMVATAAVIDD-----RPSCFRFPRG----NGIGAVLPPNN---------K--------GTPLE---- 642 (767)
Q Consensus 593 ~V~~Psd~~E~~~~l~~A~~~~~-----~P~~irl~r~----~~~~~~~p~~~---------~--------~~~~~---- 642 (767)
.++.|+|.||+.++...|++..+ .|++++++.- ...++++|+.. + ..+..
T Consensus 133 ~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~ 212 (394)
T PRK08367 133 MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGAL 212 (394)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCC
Confidence 88999999999999999998655 4999877642 11111111100 0 00000
Q ss_pred ----------------------------------cCcee-Eee----cCCcEEEEEechhHHHHHHHHHHHhcCCCcEEE
Q 004227 643 ----------------------------------IGKGR-ILM----EGDRVAILGYGSIVQQCVLAANMLKSQDISVTV 683 (767)
Q Consensus 643 ----------------------------------igk~~-vl~----eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~V 683 (767)
+|+.+ .+. ++.|++||++|+....+.+|++.|+++|++|++
T Consensus 213 ~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGl 292 (394)
T PRK08367 213 AFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGA 292 (394)
T ss_pred CCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCccee
Confidence 11111 111 457999999999999999999999999999999
Q ss_pred EEcccCCCCcHHHHHHHhccCCEEEEEcCCCC----CCHHHHHHHHHHh
Q 004227 684 ADARFCKPLDTDLIRQLANEHEILITVEEGSV----GGFGSHVCHFLTL 728 (767)
Q Consensus 684 Idl~slkPlD~e~i~~~~~~~~~vVvvEe~~~----GGlgs~I~~~l~~ 728 (767)
+.+++++|||.+.+++++++.+.|+|+|.+.. |.+..+|...|..
T Consensus 293 lri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~ 341 (394)
T PRK08367 293 AKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALVN 341 (394)
T ss_pred EEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhc
Confidence 99999999999999999999999999999863 5577777777753
No 64
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.68 E-value=4.1e-16 Score=164.19 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=139.0
Q ss_pred CCCCCCcccHHHHHHHHHhhcCCC----CcEEEeCCCChHHHHHHH--hCC--hHHhHHHHhcCC----------CC---
Q 004227 179 GGHLSANLGVVELTLALHRVFNTP----DDKIIWDVGHQAYVHKIL--TGR--RSRMNTMRKTSG----------LA--- 237 (767)
Q Consensus 179 gGH~gsslg~vel~~aL~~~~~~p----~Dr~i~s~GH~~y~~~~l--~G~--~~~l~tlr~~gg----------l~--- 237 (767)
.++++ .-|+.-+.++|-..++.. -+.+|+...|+.-...+. .|. .+.|.+|..... ..
T Consensus 12 ~krfs-~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHl 90 (265)
T cd02016 12 QKRFG-LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHL 90 (265)
T ss_pred CeEEE-ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCC
Confidence 45554 677777777776666432 244777778998655444 554 355556633111 11
Q ss_pred CCCCCCCCC-------CCCCCCcccchhHHHHHHHHHHHHHcC-----CCCeEEEEEcCCcc-cCcchHHHHHHHHHcCC
Q 004227 238 GFPKREESV-------HDAFGAGHSSTSISAGLGMAVARDILG-----KNNNVISVIGDGAM-TAGQAYEAMNNAGFLDA 304 (767)
Q Consensus 238 G~p~~~es~-------~~~~g~G~~G~~ls~A~G~AlA~kl~g-----~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~ 304 (767)
|++...+.. ......+|+|..+|.|+|+|+|.++++ ++..++|++|||++ .+|.+||+||+|+.|++
T Consensus 91 g~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~l 170 (265)
T cd02016 91 GYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGY 170 (265)
T ss_pred ccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCC
Confidence 111100000 011235789999999999999999998 47889999999996 69999999999999998
Q ss_pred C---EEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccC
Q 004227 305 N---LIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLIS 380 (767)
Q Consensus 305 n---li~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~ 380 (767)
| +|+||+||++ +++|+..+. . ...+.++
T Consensus 171 p~gg~ifvveNNq~g~sT~~~~~~--~------------------------------------~~~~~~~---------- 202 (265)
T cd02016 171 TTGGTIHIVVNNQIGFTTDPRDSR--S------------------------------------SPYCTDV---------- 202 (265)
T ss_pred CCCCEEEEEEeCCEEEEecHHHhc--c------------------------------------cccHHHH----------
Confidence 8 9999999985 454332210 0 0122222
Q ss_pred CChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHc--CCCCCcEEEEEEecCCCCCCh
Q 004227 381 ASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPP 436 (767)
Q Consensus 381 ~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~--~~~~~P~lI~v~T~KG~G~~~ 436 (767)
+++||...+ .|||+|++++.++.++|.+ +..++|++|++.|.+-+|...
T Consensus 203 ------a~~~gip~~-~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse 253 (265)
T cd02016 203 ------AKMIGAPIF-HVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNE 253 (265)
T ss_pred ------HeecCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCC
Confidence 788898877 7999999999988876543 236899999999999888763
No 65
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.56 E-value=5.8e-14 Score=138.01 Aligned_cols=164 Identities=22% Similarity=0.246 Sum_probs=109.0
Q ss_pred HHHhhcCCCCcEEEeCCCChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcC
Q 004227 194 ALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG 273 (767)
Q Consensus 194 aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g 273 (767)
.|...+ .++|.++.|.|+.......+... ..| .+.....+.|++|.++|.|+|+|++.
T Consensus 5 ~l~~~~-~~~~~i~~d~g~~~~~~~~~~~~--------------~~~---~~~~~~~~~g~~G~~~~~a~Gaa~a~---- 62 (168)
T cd00568 5 ALRAAL-PEDAIVVNDAGNSAYWAYRYLPL--------------RRG---RRFLTSTGFGAMGYGLPAAIGAALAA---- 62 (168)
T ss_pred HHHHHC-CCCCEEEeCCcHHHHHHHHheee--------------CCC---CcEEeCCCchhhhhhHHHHHHHHHhC----
Confidence 343344 45788999999876433221111 000 11223346799999999999999986
Q ss_pred CCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHH
Q 004227 274 KNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAA 353 (767)
Q Consensus 274 ~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~ 353 (767)
++++|||++|||++++ .+|++++|.++++|+++||.||+.... + .. ..+.+ +
T Consensus 63 ~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~-~----------~~----~~~~~----~------- 114 (168)
T cd00568 63 PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGT-I----------RM----HQEAF----Y------- 114 (168)
T ss_pred CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHH-H----------HH----HHHHH----c-------
Confidence 4789999999999995 789999999999999999999984211 0 00 00000 0
Q ss_pred HHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEe
Q 004227 354 KSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 354 k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T 428 (767)
+........-..+...+++++|+++. .++ +++++.++++++.+ .++|++|+++|
T Consensus 115 ----------------~~~~~~~~~~~~d~~~~a~~~G~~~~-~v~--~~~~l~~a~~~a~~--~~~p~~i~v~~ 168 (168)
T cd00568 115 ----------------GGRVSGTDLSNPDFAALAEAYGAKGV-RVE--DPEDLEAALAEALA--AGGPALIEVKT 168 (168)
T ss_pred ----------------CCCcccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 00000011112344567999999987 454 59999999999886 58999999986
No 66
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.48 E-value=3.4e-14 Score=148.13 Aligned_cols=124 Identities=28% Similarity=0.380 Sum_probs=104.9
Q ss_pred CcccchhHHHHHHHHHHHHHcCCC-CeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCCc
Q 004227 252 AGHSSTSISAGLGMAVARDILGKN-NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~-~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~~ 329 (767)
+..+.++||.|+|.|.|.|+..++ ..+||++|||+.+||.++-|+|+|+.+.-|+||||-||++ +|+||.+|.+...
T Consensus 192 ssplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DG- 270 (432)
T KOG1182|consen 192 SSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDG- 270 (432)
T ss_pred cchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCc-
Confidence 356788999999999999988776 6789999999999999999999999999999999999996 9998887653321
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
++.| -.++|+..+ .|||+|+-+++.|
T Consensus 271 -------------------------------------Ia~k----------------G~aYGi~sI-RVDGnD~lAvYnA 296 (432)
T KOG1182|consen 271 -------------------------------------IAVK----------------GPAYGIRSI-RVDGNDALAVYNA 296 (432)
T ss_pred -------------------------------------eEEe----------------ccccceEEE-EecCcchHHHHHH
Confidence 1111 357899988 7999999999999
Q ss_pred HHHhHcC--CCCCcEEEEEEecC
Q 004227 410 FQRVKEM--PAPGPVLIHVVTEK 430 (767)
Q Consensus 410 l~~a~~~--~~~~P~lI~v~T~K 430 (767)
.+.|+++ ...+|++|++.|.+
T Consensus 297 ~k~ARe~av~e~rPvliEamtYR 319 (432)
T KOG1182|consen 297 VKEAREMAVTEQRPVLIEAMTYR 319 (432)
T ss_pred HHHHHHHHHhccCchhhhhhhhh
Confidence 9988764 35799999999975
No 67
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.43 E-value=7.6e-11 Score=138.91 Aligned_cols=234 Identities=19% Similarity=0.196 Sum_probs=155.4
Q ss_pred CcE--EeccccHHHHHHHHHHHHhcCCe--eEEee-chhHH---HhHHHHHHHhhh---cCCCCEEEEeecCCccCCCCC
Q 004227 507 DRC--FDVGIAEQHAVTFAAGLASEGVK--PFCAI-YSSFL---QRGYDQVVHDVD---LQKLPVRFAMDRAGLVGADGP 575 (767)
Q Consensus 507 ~R~--~d~GIaE~~~vg~AaGlA~~G~r--P~~~t-ys~Fl---~ra~dQi~~~~a---~~~lpViiv~~~~Gl~G~dG~ 575 (767)
.+| +|..++|.+++|+=.|.+.+.-- .+++. |.+|. |-.+|+.+...- -|+..|++...|+ +-| .||
T Consensus 946 ~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPHG-yEG-QGP 1023 (1228)
T PRK12270 946 GKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHG-YEG-QGP 1023 (1228)
T ss_pred ceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccCC-cCC-CCC
Confidence 454 69999999999999999998644 44443 88885 788888765422 2667788888773 333 689
Q ss_pred CCCCh--hHHHHhhcCCCcEEEecCCHHHHHHHHHH-HHhhCCCCEEEEecCCCCcccccCCCCCCCCcccCcee-Eeec
Q 004227 576 THCGA--FDVTFMSCLPNMVVMAPSDEAELMHMVAT-AAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGR-ILME 651 (767)
Q Consensus 576 TH~~~--~Dla~lr~iPg~~V~~Psd~~E~~~~l~~-A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~-vl~e 651 (767)
-|+.. |-.--|.+=.||+|..|+++...+++++. +...-.+|.+++.||..+.... ....-..|.-|+.+ ||.+
T Consensus 1024 dHSSaRiERfLqlcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~Ka--A~S~vedFT~g~F~pVi~D 1101 (1228)
T PRK12270 1024 DHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKA--AVSDVEDFTEGKFRPVIDD 1101 (1228)
T ss_pred CcchHHHHHHHHhhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchh--hcCCHHHhccCCceecCCC
Confidence 99974 44334556689999999999999999985 4445667999999987643211 00011123334443 3321
Q ss_pred -----C--CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC----CEEEEEcCCC-CCCHH
Q 004227 652 -----G--DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH----EILITVEEGS-VGGFG 719 (767)
Q Consensus 652 -----G--~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~----~~vVvvEe~~-~GGlg 719 (767)
+ -+=+|+|+|-...+.++.-+. ...-++.++.+-.|.|||.+.|++.+..+ +.+.+-||-. .|-|.
T Consensus 1102 ~~~~~~~~V~RVlLcSGKvYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~ 1179 (1228)
T PRK12270 1102 PTVDDGAKVRRVLLCSGKLYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWP 1179 (1228)
T ss_pred CCCCCccceeEEEEEcchhHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCch
Confidence 1 256789999988887765432 22346899999999999999998877543 5677778865 46665
Q ss_pred HHHHHHHHhcCCCCCCceEEEEecCCcccc
Q 004227 720 SHVCHFLTLSGILDGPLKVFIFSLIQKLET 749 (767)
Q Consensus 720 s~I~~~l~~~~~~d~~~k~~~~gl~D~f~~ 749 (767)
.++-.|.+. ++...++++++-|-.=.+
T Consensus 1180 -f~~~~l~~~--l~~~~~lr~VsRpasasP 1206 (1228)
T PRK12270 1180 -FMALNLPEL--LPDGRRLRRVSRPASASP 1206 (1228)
T ss_pred -hhhhhhHhh--ccCCCCceEecCCcccCC
Confidence 333333322 222346777876654443
No 68
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.42 E-value=4.6e-12 Score=128.23 Aligned_cols=121 Identities=26% Similarity=0.353 Sum_probs=91.8
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCC-CEEEEEECCCCCccccccCCCCCCc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~-nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
..|++|.++|+|+|+++|. ++++|||++|||+++ +..++|.+|+++++ |+++||.||+....- +....
T Consensus 46 ~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~-----~~~~~ 114 (188)
T cd03371 46 TVGSMGHASQIALGIALAR----PDRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSV-----GGQPT 114 (188)
T ss_pred ecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhcc-----CCcCC
Confidence 3599999999999999986 578999999999998 67788999999884 788888888742210 00000
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
. ....+...++++||+.+...+ ++.++|.++
T Consensus 115 ~-----------------------------------------------~~~~d~~~~A~a~G~~~~~~v--~~~~el~~a 145 (188)
T cd03371 115 V-----------------------------------------------SFDVSLPAIAKACGYRAVYEV--PSLEELVAA 145 (188)
T ss_pred C-----------------------------------------------CCCCCHHHHHHHcCCceEEec--CCHHHHHHH
Confidence 0 001234456899999864345 489999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGKG 433 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~G 433 (767)
++++.+ .++|++|++.+.++++
T Consensus 146 l~~a~~--~~~p~lIev~~~~~~~ 167 (188)
T cd03371 146 LAKALA--ADGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHh--CCCCEEEEEEecCCCC
Confidence 999876 5789999999988876
No 69
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.42 E-value=3e-12 Score=137.80 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=121.5
Q ss_pred CCCCCCcccHHHHHHHHHhhcCC-CCc-EEEeCCCChH---HHHHHHhCC-----------hHHhHHH-HhcC---CCCC
Q 004227 179 GGHLSANLGVVELTLALHRVFNT-PDD-KIIWDVGHQA---YVHKILTGR-----------RSRMNTM-RKTS---GLAG 238 (767)
Q Consensus 179 gGH~gsslg~vel~~aL~~~~~~-p~D-r~i~s~GH~~---y~~~~l~G~-----------~~~l~tl-r~~g---gl~G 238 (767)
-||+|++.|..-+.+.|.++.+. ..| .+|...||.+ .+..+|.|. .+.|..| ||+. |+.+
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGipS 126 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIPS 126 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-S
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCcc
Confidence 49999999999999999776432 234 5677899998 566788883 3556555 6653 4444
Q ss_pred CCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcC----CCEEEEEECCC
Q 004227 239 FPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD----ANLIVVLNDNK 314 (767)
Q Consensus 239 ~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~----~nli~Iv~dN~ 314 (767)
|..+ +.++...-.|-+|.+++.|.|+++ .++|-.|+||+||||..+|-..-++..-.+++ ..|+-|+.-|+
T Consensus 127 H~~p-~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG 201 (379)
T PF09364_consen 127 HVSP-ETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNG 201 (379)
T ss_dssp SS-T-TSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-S
T ss_pred ccCc-CCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecC
Confidence 5443 334433345888888888888876 46899999999999999996544444334433 57999999999
Q ss_pred C-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCe
Q 004227 315 Q-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (767)
Q Consensus 315 ~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (767)
+ ++.||- |+++ +.+++.+ +|+.+||.
T Consensus 202 ~KI~~pTi---------------l~r~----------------------~~~eL~~----------------lf~G~Gy~ 228 (379)
T PF09364_consen 202 YKISNPTI---------------LARM----------------------SDEELEA----------------LFRGYGYE 228 (379)
T ss_dssp BSSSSB-H---------------HHHS-----------------------HHHHHH----------------HHHHTTEE
T ss_pred ccccCCeE---------------eeec----------------------CHHHHHH----------------HHHhCCCe
Confidence 6 654431 1111 1123332 49999999
Q ss_pred EeeccCCCCHHHHHHHH--------HHhH-------cC-CCCCc--EEEEEEecCCCCCChh------hhcccccccccc
Q 004227 394 YIGPVDGHNVEDLVTIF--------QRVK-------EM-PAPGP--VLIHVVTEKGKGYPPA------EAAADRMHGVVK 449 (767)
Q Consensus 394 ~i~~vDGhdi~~l~~al--------~~a~-------~~-~~~~P--~lI~v~T~KG~G~~~a------e~~~~~~Hg~~~ 449 (767)
.+ .|+|+|.+++.+.+ ++++ +. ...+| -+|+.+|.||++.|.. | ..-+.|+++.
T Consensus 229 p~-~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlRtPKGWtgP~~vdG~~iE-Gt~raHQVPl 306 (379)
T PF09364_consen 229 PI-FVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLRTPKGWTGPKEVDGKPIE-GTFRAHQVPL 306 (379)
T ss_dssp EE-EEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE--TTTTS-SEETTEE-T-TSGGGSS-SS
T ss_pred EE-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEECCcccCCccccCCcccc-Ccceeeeccc
Confidence 87 78999976554322 2222 11 11244 4899999999987742 2 2246677764
No 70
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.42 E-value=4.8e-12 Score=128.83 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=93.5
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|+++++|+++||.||+..
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~y-------------- 110 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQW-------------- 110 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchh--------------
Confidence 5688999999999999985 688999999999999 56788999999999999999777641
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+.++..-+.. .+... ..-++-.++...++++||+++. .+ ++.++|.+++
T Consensus 111 ----------------g~~~~~q~~~---~~~~~---------~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~al 159 (196)
T cd02013 111 ----------------GAEKKNQVDF---YNNRF---------VGTELESESFAKIAEACGAKGI-TV--DKPEDVGPAL 159 (196)
T ss_pred ----------------HHHHHHHHHH---cCCCc---------ccccCCCCCHHHHHHHCCCEEE-EE--CCHHHHHHHH
Confidence 1111100000 00000 0001113566778999999876 34 4699999999
Q ss_pred HHhHcC-CCCCcEEEEEEecCCCC
Q 004227 411 QRVKEM-PAPGPVLIHVVTEKGKG 433 (767)
Q Consensus 411 ~~a~~~-~~~~P~lI~v~T~KG~G 433 (767)
+++.+. ..++|++|++.+.+..+
T Consensus 160 ~~a~~~~~~~~p~liev~v~~~~~ 183 (196)
T cd02013 160 QKAIAMMAEGKTTVIEIVCDQELG 183 (196)
T ss_pred HHHHhcCCCCCeEEEEEEeCcccC
Confidence 988641 13789999999976664
No 71
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.39 E-value=1.8e-12 Score=128.98 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=88.7
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ +..++|++|+++++|+++||.||+....-...+.
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~------ 113 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ------ 113 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccchhhhh------
Confidence 4578999999999999885 589999999999999 6679999999999998888877753221110000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
.. | + .......+.-..+...++++||+++. .++ +.+++.+++
T Consensus 114 ---------~~----~--------------~--------~~~~~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~al 155 (172)
T cd02004 114 ---------LS----Y--------------G--------LGLPVTTLLPDTRYDLVAEAFGGKGE-LVT--TPEELKPAL 155 (172)
T ss_pred ---------hh----c--------------c--------CCCceeccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHH
Confidence 00 0 0 00000001112345667999999987 455 699999999
Q ss_pred HHhHcCCCCCcEEEEEEe
Q 004227 411 QRVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T 428 (767)
+++.+ .++|++|++.+
T Consensus 156 ~~a~~--~~~p~liev~i 171 (172)
T cd02004 156 KRALA--SGKPALINVII 171 (172)
T ss_pred HHHHH--cCCCEEEEEEc
Confidence 99886 47999999976
No 72
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.37 E-value=4.3e-12 Score=127.16 Aligned_cols=127 Identities=22% Similarity=0.304 Sum_probs=92.4
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcch-HHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQA-YEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~-~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ +. ++++.+|.++++|+++||.||+.... +..+......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~-~~~~~~~~~~ 121 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAM-TGGQPHPGTG 121 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceec-cCCCCCCCCc
Confidence 4688999999999999996 488999999999997 44 79999999999999988888874221 0000000000
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
. . .....-..+...++++|||++....+++|++++.++
T Consensus 122 ~-----------------------------------~-------~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~a 159 (178)
T cd02008 122 K-----------------------------------T-------LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREE 159 (178)
T ss_pred c-----------------------------------c-------ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHH
Confidence 0 0 000000134456799999999876799999999999
Q ss_pred HHHhHcCCCCCcEEEEEEe
Q 004227 410 FQRVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T 428 (767)
++++.+ .++|++|+++.
T Consensus 160 l~~a~~--~~gp~lI~v~~ 176 (178)
T cd02008 160 LKEALA--VPGVSVIIAKR 176 (178)
T ss_pred HHHHHh--CCCCEEEEEeC
Confidence 999876 57999999975
No 73
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.34 E-value=6.9e-12 Score=126.47 Aligned_cols=128 Identities=22% Similarity=0.375 Sum_probs=93.0
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ +...+|.+|+++++|+++||.||+...
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~------------- 108 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLG------------- 108 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccH-------------
Confidence 5588999999999999985 578999999999998 677889999999999999998887421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH-hhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
.++...+... + +.+. .+. -..+...++++||+++. .++ +.+++.+
T Consensus 109 -----------------~~~~~~~~~~---~----------~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 155 (186)
T cd02015 109 -----------------MVRQWQELFY---E----------GRYSHTTLDSNPDFVKLAEAYGIKGL-RVE--KPEELEA 155 (186)
T ss_pred -----------------HHHHHHHHHc---C----------CceeeccCCCCCCHHHHHHHCCCceE-EeC--CHHHHHH
Confidence 1111100000 0 0000 011 12455678999999977 454 5899999
Q ss_pred HHHHhHcCCCCCcEEEEEEecCCC
Q 004227 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++++.+ .++|++|++.+.+..
T Consensus 156 al~~a~~--~~~p~liev~~~~~~ 177 (186)
T cd02015 156 ALKEALA--SDGPVLLDVLVDPEE 177 (186)
T ss_pred HHHHHHh--CCCCEEEEEEeCCCc
Confidence 9999886 589999999997543
No 74
>PRK06163 hypothetical protein; Provisional
Probab=99.34 E-value=2.5e-11 Score=124.14 Aligned_cols=167 Identities=19% Similarity=0.275 Sum_probs=110.5
Q ss_pred CcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHH
Q 004227 184 ANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (767)
Q Consensus 184 sslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~ 263 (767)
..+.-.+++..|...+ .++|.++.|.|......+.. +. .|. ..++.|.+|.++|+|+
T Consensus 11 ~~~~~~~~i~~l~~~l-~~~~~iv~D~G~~~~~~~~~----------~~------~~~------~~~~~GsMG~glpaAi 67 (202)
T PRK06163 11 KVMNRFDLTCRLVAKL-KDEEAVIGGIGNTNFDLWAA----------GQ------RPQ------NFYMLGSMGLAFPIAL 67 (202)
T ss_pred CCcCHHHHHHHHHHhc-CCCCEEEECCCccHHHHHHh----------hc------CCC------CeEeecccccHHHHHH
Confidence 3455555655555444 34678888998422111111 10 111 0124688999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHc-CCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhh
Q 004227 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL-DANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQA 342 (767)
Q Consensus 264 G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~-~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~ 342 (767)
|+++|. ++++|||++|||+++ |...+|.+|+++ ++|+++||.||+.... + +... ..
T Consensus 68 GaalA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~-~----~~~~-~~----------- 124 (202)
T PRK06163 68 GVALAQ----PKRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQI-T----GGQP-TL----------- 124 (202)
T ss_pred HHHHhC----CCCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhh-c----CCcc-CC-----------
Confidence 999985 688999999999998 677889999876 5899999999974211 0 0000 00
Q ss_pred chhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCe-EeeccCCCCHHHHHHHHHHhHcCCCCCc
Q 004227 343 STNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY-YIGPVDGHNVEDLVTIFQRVKEMPAPGP 421 (767)
Q Consensus 343 ~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~-~i~~vDGhdi~~l~~al~~a~~~~~~~P 421 (767)
..-.++...++++||++ .. .+ .+.++|..+++++.+ .++|
T Consensus 125 ----------------------------------~~~~~Df~~lA~a~G~~~~~-~v--~~~~el~~al~~a~~--~~~p 165 (202)
T PRK06163 125 ----------------------------------TSQTVDVVAIARGAGLENSH-WA--ADEAHFEALVDQALS--GPGP 165 (202)
T ss_pred ----------------------------------CCCCCCHHHHHHHCCCceEE-Ee--CCHHHHHHHHHHHHh--CCCC
Confidence 00013445679999996 33 23 589999999999986 5799
Q ss_pred EEEEEEecCCCCCC
Q 004227 422 VLIHVVTEKGKGYP 435 (767)
Q Consensus 422 ~lI~v~T~KG~G~~ 435 (767)
.+|++.+......+
T Consensus 166 ~lIeV~i~~~~~~~ 179 (202)
T PRK06163 166 SFIAVRIDDKPGVG 179 (202)
T ss_pred EEEEEEecCCCCCC
Confidence 99999997665443
No 75
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.34 E-value=2.9e-11 Score=121.43 Aligned_cols=118 Identities=25% Similarity=0.319 Sum_probs=87.8
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcc
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
.|++|.++|+|+|+|+|.+ ++|||++|||+++ +...++.+|.+++ .|+++||.||+....- +....
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~-----~~~~~- 107 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGST-----GNQPT- 107 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCcccccc-----CCCCC-
Confidence 6889999999999999963 7899999999997 5557899999887 5788887666532210 00000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
. . ....+...++++||+.+. .++| +.+++.+++
T Consensus 108 ~-~--------------------------------------------~~~~d~~~lA~a~G~~~~-~v~~-~~~el~~al 140 (179)
T cd03372 108 H-A--------------------------------------------GKKTDLEAVAKACGLDNV-ATVA-SEEAFEKAV 140 (179)
T ss_pred C-C--------------------------------------------CCCCCHHHHHHHcCCCeE-EecC-CHHHHHHHH
Confidence 0 0 001234456899999987 5666 899999999
Q ss_pred HHhHcCCCCCcEEEEEEecCCCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKGKG 433 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG~G 433 (767)
+++. ++|++|++.|.++.+
T Consensus 141 ~~a~----~gp~lIev~~~~~~~ 159 (179)
T cd03372 141 EQAL----DGPSFIHVKIKPGNT 159 (179)
T ss_pred HHhc----CCCEEEEEEEcCCCC
Confidence 9886 589999999988775
No 76
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.33 E-value=1e-10 Score=146.14 Aligned_cols=218 Identities=13% Similarity=0.099 Sum_probs=160.2
Q ss_pred cEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhh
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMS 587 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr 587 (767)
.|+.+ =+|.++++++.|.+.+|.+.++.|.+..+..+.+.+. .++..++|+++....+++.+..+..+.+..|+...|
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l~-~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~~R 130 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNMY-KIAGELLPCVFHVSARAIAAHALSIFGDHQDVMAAR 130 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHHH-HHHhccCCEEEEEecCCCCCCCCccCCCchHHHHhh
Confidence 45544 6999999999999999999999998888878888874 456669998888755543443456677777876666
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCCC----CcccccCCC----------C-CC---------CC
Q 004227 588 CLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN----GIGAVLPPN----------N-KG---------TP 640 (767)
Q Consensus 588 ~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~~----~~~~~~p~~----------~-~~---------~~ 640 (767)
. -|+.+++|++.||+.++...|++ ....|+++.++.-. ...+++++. . .. .+
T Consensus 131 ~-~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p 209 (1165)
T TIGR02176 131 Q-TGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHP 209 (1165)
T ss_pred c-CCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCC
Confidence 6 57899999999999999998876 35669988776310 011111100 0 00 00
Q ss_pred cc--------------------------------------cCce-----eEeecCCcEEEEEechhHHHHHHHHHHHhcC
Q 004227 641 LE--------------------------------------IGKG-----RILMEGDRVAILGYGSIVQQCVLAANMLKSQ 677 (767)
Q Consensus 641 ~~--------------------------------------igk~-----~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~ 677 (767)
.. .|+- +.-.++++++||++|+....+.+|++.|+++
T Consensus 210 ~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~ 289 (1165)
T TIGR02176 210 HVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAK 289 (1165)
T ss_pred ceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhc
Confidence 00 0110 0111457999999999999999999999999
Q ss_pred CCcEEEEEcccCCCCcHHHHHHHh-ccCCEEEEEcCCCC-C----CHHHHHHHHHHh
Q 004227 678 DISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSV-G----GFGSHVCHFLTL 728 (767)
Q Consensus 678 GI~v~VIdl~slkPlD~e~i~~~~-~~~~~vVvvEe~~~-G----Glgs~I~~~l~~ 728 (767)
|++|++|.++.++|||.+.+.+.+ ++.+.|+|+|.+.. | -+...|...+..
T Consensus 290 G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~ 346 (1165)
T TIGR02176 290 GEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYE 346 (1165)
T ss_pred CCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhh
Confidence 999999999999999999998866 68899999999852 2 277777777754
No 77
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.32 E-value=1.4e-11 Score=126.34 Aligned_cols=140 Identities=21% Similarity=0.282 Sum_probs=94.0
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|++|.++|+|+|+++|. ++++|||++|||+++. ...+|.+|.++++|+++||-||+...
T Consensus 45 ~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g------------ 106 (205)
T cd02003 45 YGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLM--LHSEIVTAVQEGLKIIIVLFDNHGFG------------ 106 (205)
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhc--cHHHHHHHHHcCCCCEEEEEECCccH------------
Confidence 35688999999999999885 6889999999999995 45679999999999988888887421
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHh-hhcCCchHHHHHHH-HH-HHh-hccCCChhhhHhhcCCeEeeccCCCCHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSIT-KQIGGQTHEVAAKV-DE-YAR-GLISASGSTFFEELGLYYIGPVDGHNVED 405 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~-~~~g~~~~~~~~k~-~~-~~r-~~~~~~~~~lfea~G~~~i~~vDGhdi~~ 405 (767)
.+|...+..- +..+. ....+. +. ... ..-..+...++++||+++. .| ++.++
T Consensus 107 ------------------~~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~-~v--~~~~e 162 (205)
T cd02003 107 ------------------CINNLQESTGSGSFGT---EFRDRDQESGQLDGALLPVDFAANARSLGARVE-KV--KTIEE 162 (205)
T ss_pred ------------------HHHHHHHHhcCccccc---hhcccccccccccCCCCCCCHHHHHHhCCCEEE-EE--CCHHH
Confidence 1111000000 00000 000000 00 000 0112466778999999976 34 68999
Q ss_pred HHHHHHHhHcCCCCCcEEEEEEecCCCC
Q 004227 406 LVTIFQRVKEMPAPGPVLIHVVTEKGKG 433 (767)
Q Consensus 406 l~~al~~a~~~~~~~P~lI~v~T~KG~G 433 (767)
|.++++++.+ .++|++|++.+.+...
T Consensus 163 l~~al~~a~~--~~gp~lIeV~v~~~~~ 188 (205)
T cd02003 163 LKAALAKAKA--SDRTTVIVIKTDPKSM 188 (205)
T ss_pred HHHHHHHHHh--CCCCEEEEEEeecccc
Confidence 9999999986 5899999999976553
No 78
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.31 E-value=1.4e-11 Score=123.09 Aligned_cols=130 Identities=23% Similarity=0.282 Sum_probs=89.1
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+ |.+|.++|+|+|+|+|. ++++|||++|||+++.+. +++++|.+++.|+++||.||+....
T Consensus 47 ~~-g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~----------- 108 (178)
T cd02002 47 RG-GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGA----------- 108 (178)
T ss_pred CC-ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHH-----------
Confidence 46 99999999999999986 588999999999999664 7899999999999999999973211
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc--cCCChhhhHhhcCCeEeeccCCCCHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL--ISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~--~~~~~~~lfea~G~~~i~~vDGhdi~~l~ 407 (767)
++..-.... +.... . .+ ....+. -..+...++++||+++. .+++ .+++.
T Consensus 109 -------------------~~~~~~~~~---~~~~~-~-~~--~~~~~~~~~~~d~~~~a~a~G~~~~-~v~~--~~el~ 159 (178)
T cd02002 109 -------------------LRSFLKRVG---PEGPG-E-NA--PDGLDLLDPGIDFAAIAKAFGVEAE-RVET--PEELD 159 (178)
T ss_pred -------------------HHHHHHHHc---CCCcc-c-cc--ccccccCCCCCCHHHHHHHcCCceE-EeCC--HHHHH
Confidence 000000000 00000 0 00 000000 11345667999999986 4554 99999
Q ss_pred HHHHHhHcCCCCCcEEEEEEe
Q 004227 408 TIFQRVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 408 ~al~~a~~~~~~~P~lI~v~T 428 (767)
++++++.+ .++|++|++++
T Consensus 160 ~al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 160 EALREALA--EGGPALIEVVV 178 (178)
T ss_pred HHHHHHHh--CCCCEEEEEEC
Confidence 99999886 57999999863
No 79
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.31 E-value=1.3e-10 Score=128.80 Aligned_cols=215 Identities=14% Similarity=0.141 Sum_probs=152.3
Q ss_pred CCCcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 505 FPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 505 ~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
....|+.+ =+|.++++++.|++++|.|.+++|.+..+..+.+.+ ..++.+++|++++...+++....-|++....|+.
T Consensus 46 ~~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l-~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~ 123 (365)
T COG0674 46 VGGVFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLLMAEAL-GLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDLM 123 (365)
T ss_pred cCcEEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHH-HHHHhccCCeEEEEeccCcCCCcccccccHHHHH
Confidence 33455554 789999999999999999999999999888888876 6678999998888866665555556999999998
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhhCC---CCEEEEecCCCC----cccccCC---------CCCCC-------Cc
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVIDD---RPSCFRFPRGNG----IGAVLPP---------NNKGT-------PL 641 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~---~P~~irl~r~~~----~~~~~p~---------~~~~~-------~~ 641 (767)
..|.- ++.+++-+|.+|+.++...|++..+ -|+++.++.-.. ..++++. ..+.+ +.
T Consensus 124 ~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (365)
T COG0674 124 AARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPV 202 (365)
T ss_pred HHHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCC
Confidence 88874 8888888899999999999988544 488776532100 0000000 00000 00
Q ss_pred ccC--------------------------------------c----eeEee-cCCcEEEEEechhHHHHHHHHHH-HhcC
Q 004227 642 EIG--------------------------------------K----GRILM-EGDRVAILGYGSIVQQCVLAANM-LKSQ 677 (767)
Q Consensus 642 ~ig--------------------------------------k----~~vl~-eG~dvtIva~Gs~v~~al~Aa~~-L~~~ 677 (767)
..| + +.+.. ++.+++||+||+....+.+++.. ++++
T Consensus 203 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~~~~~~~ 282 (365)
T COG0674 203 LPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVVDLLRDK 282 (365)
T ss_pred cCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHHHHHHhc
Confidence 001 0 00000 45689999999877777777655 5588
Q ss_pred CCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHH
Q 004227 678 DISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHV 722 (767)
Q Consensus 678 GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I 722 (767)
|++++++.+|+++|||.+.+++++++.+.+.|++-.. .|++++.+
T Consensus 283 g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~~l 328 (365)
T COG0674 283 GEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAEPL 328 (365)
T ss_pred CceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchhhH
Confidence 9999999999999999999999998877445555333 35554433
No 80
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.30 E-value=2.1e-11 Score=124.67 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=94.7
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||-||+..
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~y-------------- 114 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYL-------------- 114 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchH--------------
Confidence 5688999999999999985 688999999999999 77788999999999999999999841
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+.+|...+.......... .. ............++...++++||+++. .| .+.++|.+++
T Consensus 115 ----------------g~~~~~q~~~~~~~~~~~-~~-~~~~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~al 173 (202)
T cd02006 115 ----------------GLIRQAQRAFDMDYQVNL-AF-ENINSSELGGYGVDHVKVAEGLGCKAI-RV--TKPEELAAAF 173 (202)
T ss_pred ----------------HHHHHHHHHhcCcccccc-cc-ccccccccCCCCCCHHHHHHHCCCEEE-EE--CCHHHHHHHH
Confidence 112211000000000000 00 000000000012567788999999876 34 5789999999
Q ss_pred HHhHcC--CCCCcEEEEEEecCCC
Q 004227 411 QRVKEM--PAPGPVLIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~--~~~~P~lI~v~T~KG~ 432 (767)
+++.+. ..++|++|++.+....
T Consensus 174 ~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 174 EQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred HHHHHhcccCCCcEEEEEEecccc
Confidence 988741 1478999999986554
No 81
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.29 E-value=1.4e-10 Score=128.42 Aligned_cols=167 Identities=23% Similarity=0.295 Sum_probs=115.1
Q ss_pred ccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHH
Q 004227 186 LGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGM 265 (767)
Q Consensus 186 lg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~ 265 (767)
++-.+.+-.+...+ .++|.++.+.|-.+. ++..+|. ..+.+||.. .+..|++|+++|+|+|+
T Consensus 172 ~~r~~ai~~i~~~l-~~~~iVV~~~G~~s~----------el~~~~~-~~~~~~~~~------f~~~GsMG~a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHL-PDNTVIVSTTGKTSR----------ELYELRD-RIGQGHARD------FLTVGSMGHASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhC-CCCCEEEECCCCCcH----------HHHHhhc-ccccCCCCc------eEeechhhhHHHHHHHH
Confidence 56666554444444 356788888884331 2334431 224566543 23459999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcC-CCEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhc
Q 004227 266 AVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQAS 343 (767)
Q Consensus 266 AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~ 343 (767)
|+|. ++++|||+.|||++. |...+|.++++++ .|+++||.||+. .++ +......
T Consensus 234 ala~----p~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~~------g~q~~~~------------ 289 (361)
T TIGR03297 234 ALAR----PDQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDSV------GGQPTVS------------ 289 (361)
T ss_pred HHHC----CCCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCcccccc------CCcCCCC------------
Confidence 9985 588999999999997 6678899999887 599999999984 221 1111000
Q ss_pred hhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEE
Q 004227 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVL 423 (767)
Q Consensus 344 ~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~l 423 (767)
...+...++++|||... +..++.++|.++++++.+ .++|++
T Consensus 290 -----------------------------------~~~d~~~iA~a~G~~~~--~~v~~~~eL~~al~~a~~--~~gp~l 330 (361)
T TIGR03297 290 -----------------------------------QHLDFAQIAKACGYAKV--YEVSTLEELETALTAASS--ANGPRL 330 (361)
T ss_pred -----------------------------------CCCCHHHHHHHCCCceE--EEeCCHHHHHHHHHHHHh--CCCcEE
Confidence 01233445899997432 355899999999999976 478999
Q ss_pred EEEEecCCCC
Q 004227 424 IHVVTEKGKG 433 (767)
Q Consensus 424 I~v~T~KG~G 433 (767)
|++++.+|.+
T Consensus 331 IeV~v~~g~~ 340 (361)
T TIGR03297 331 IEVKVRPGSR 340 (361)
T ss_pred EEEEecCCCc
Confidence 9999988764
No 82
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.26 E-value=5.2e-10 Score=127.68 Aligned_cols=234 Identities=19% Similarity=0.161 Sum_probs=169.2
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCC---EEEEeecCCccCCCCCCCCChhHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPTHCGAFDV 583 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lp---Viiv~~~~Gl~G~dG~TH~~~~Dl 583 (767)
+-+++.+.+|.-+..+|.|.+..|.|.++.+-...+.++.|.+++. ++.... |++++|..|. .+.|...|-
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s~-ay~Gv~GGlviv~aDDpg~-----~SSqneqds 131 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMSL-AYAGVTGGLVIVVADDPGM-----HSSQNEQDS 131 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhhh-hhcCccccEEEEEccCCCc-----ccccchhHh
Confidence 7899999999999999999999999999999999999999998654 665543 5666666664 233445566
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCCCCcc---ccc-----CC-CCC--CCCcccCcee--
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGNGIG---AVL-----PP-NNK--GTPLEIGKGR-- 647 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~~~~~---~~~-----p~-~~~--~~~~~igk~~-- 647 (767)
.++.....+-|+.|+|+||+.++++.++.. .+-|+++|........ +++ |. ..+ ...-..++..
T Consensus 132 r~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~ 211 (640)
T COG4231 132 RAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRV 211 (640)
T ss_pred HHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeec
Confidence 666767788899999999999999999974 4569999875321100 000 00 000 0000111110
Q ss_pred -----------------------------EeecC--CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHH
Q 004227 648 -----------------------------ILMEG--DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL 696 (767)
Q Consensus 648 -----------------------------vl~eG--~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~ 696 (767)
.+..+ .++-||+.|-....+.+|.+. .|+...++.+-+.+|||.+.
T Consensus 212 p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~---lgl~~~~lklg~~~Plp~~~ 288 (640)
T COG4231 212 PANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALED---LGLDDELLKLGTPYPLPEQL 288 (640)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHH---cCCCceeEEecCCcCCCHHH
Confidence 00013 589999999999999988655 48999999999999999999
Q ss_pred HHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccccccc
Q 004227 697 IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCRLLS 755 (767)
Q Consensus 697 i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~~~~ 755 (767)
+++.++..+.|+||||... =+..+|.+.+.++|. ++.-.|-.+.|.|..+-|+
T Consensus 289 i~~F~~g~~~vlVVEE~~P-~iE~qv~~~l~~~g~-----~v~v~GKd~gllP~~GElt 341 (640)
T COG4231 289 IENFLKGLERVLVVEEGEP-FIEEQVKALLYDAGL-----PVEVHGKDEGLLPMEGELT 341 (640)
T ss_pred HHHHHhcCcEEEEEecCCc-hHHHHHHHHHHhcCC-----ceEeecccccccCcccccC
Confidence 9999999999999999865 457778877877764 3444555555555555444
No 83
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.26 E-value=3.9e-11 Score=120.30 Aligned_cols=127 Identities=16% Similarity=0.256 Sum_probs=92.2
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|.+|.++|+|+|+++|. ++++|||++|||+++ +....|.+|.++++|+++||.||+...
T Consensus 45 ~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g------------ 106 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYG------------ 106 (177)
T ss_pred CCChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcch------------
Confidence 46688999999999999985 688999999999998 777889999999999999988887311
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
.++.. +..... +....++-..+..++.++||.++. .+ .+.+++.++
T Consensus 107 ------------------~~~~~------------~~~~~~-~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~el~~a 152 (177)
T cd02010 107 ------------------LIKWK------------QEKEYG-RDSGVDFGNPDFVKYAESFGAKGY-RI--ESADDLLPV 152 (177)
T ss_pred ------------------HHHHH------------HHHhcC-CcccCcCCCCCHHHHHHHCCCEEE-EE--CCHHHHHHH
Confidence 11100 000000 000001112456678999999876 34 589999999
Q ss_pred HHHhHcCCCCCcEEEEEEecC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~K 430 (767)
++++.+ .++|++|++.+..
T Consensus 153 l~~a~~--~~~p~liev~~~~ 171 (177)
T cd02010 153 LERALA--ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHHh--CCCCEEEEEEecc
Confidence 999986 5799999999854
No 84
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.26 E-value=9.1e-12 Score=121.49 Aligned_cols=130 Identities=20% Similarity=0.318 Sum_probs=92.1
Q ss_pred CCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCC
Q 004227 249 AFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPAT 328 (767)
Q Consensus 249 ~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~ 328 (767)
+.+.|.+|.++|+|+|+++|+ ++++|||++|||++. +...++.+|.+++.|+++||.||+....
T Consensus 24 ~~~~g~mG~~~~~aiGa~~a~----p~~~vv~i~GDG~f~--~~~~el~ta~~~~~~v~~vv~nN~~~~~---------- 87 (153)
T PF02775_consen 24 SGGFGSMGYALPAAIGAALAR----PDRPVVAITGDGSFL--MSLQELATAVRYGLPVVIVVLNNGGYGM---------- 87 (153)
T ss_dssp STTTT-TTTHHHHHHHHHHHS----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTSSEEEEEEESSBSHH----------
T ss_pred CCCccccCCHHHhhhHHHhhc----CcceeEEecCCccee--eccchhHHHhhccceEEEEEEeCCcceE----------
Confidence 457799999999999999984 689999999999998 5577899999999999999999974210
Q ss_pred cchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 329 ~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
++.. ....+... . .. ...+.+-..+...+++++|+++. .|+..|.+++.+
T Consensus 88 --------------------~~~~----~~~~~~~~-~-~~---~~~~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~ 137 (153)
T PF02775_consen 88 --------------------TGGQ----QTPFGGGR-F-SG---VDGKTFPNPDFAALAEAFGIKGA-RVTTPDPEELEE 137 (153)
T ss_dssp --------------------HHHH----HHHTTSTC-H-HS---TBTTTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHH
T ss_pred --------------------eccc----cccCcCcc-c-cc---ccccccccCCHHHHHHHcCCcEE-EEccCCHHHHHH
Confidence 0000 00000000 0 00 00001223456678999999976 677777899999
Q ss_pred HHHHhHcCCCCCcEEEEE
Q 004227 409 IFQRVKEMPAPGPVLIHV 426 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v 426 (767)
+++++.+ .++|++|+|
T Consensus 138 al~~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 138 ALREALE--SGGPAVIEV 153 (153)
T ss_dssp HHHHHHH--SSSEEEEEE
T ss_pred HHHHHHh--CCCcEEEEc
Confidence 9999986 689999986
No 85
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.24 E-value=4.8e-11 Score=119.57 Aligned_cols=126 Identities=21% Similarity=0.315 Sum_probs=88.9
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|.++|+|+|+++|. ++++|+|++|||+++.+ . .++.+|..+++|+++||.||+...
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~-~el~t~~~~~lp~~~iv~NN~~~~------------- 109 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-M-GDLITAVKYNLPVIVVVFNNSDLG------------- 109 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-H-HHHHHHHHhCCCcEEEEEECCchh-------------
Confidence 4588999999999999885 58899999999999966 4 458889999999999999997311
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
.++...+. .+.. .+..++-..+...++++||+++. .+ .+.+++.+++
T Consensus 110 -----------------~~~~~~~~----~~~~---------~~~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~~l 156 (178)
T cd02014 110 -----------------FIKWEQEV----MGQP---------EFGVDLPNPDFAKIAEAMGIKGI-RV--EDPDELEAAL 156 (178)
T ss_pred -----------------HHHHHHHH----hcCC---------ceeccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 11100000 0000 00001112345567999999876 44 4789999999
Q ss_pred HHhHcCCCCCcEEEEEEecC
Q 004227 411 QRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~K 430 (767)
+++.+ .++|++|++.|..
T Consensus 157 ~~a~~--~~~p~liev~~~~ 174 (178)
T cd02014 157 DEALA--ADGPVVIDVVTDP 174 (178)
T ss_pred HHHHh--CCCCEEEEEEeCC
Confidence 99886 5799999999864
No 86
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.24 E-value=4.5e-11 Score=117.60 Aligned_cols=116 Identities=26% Similarity=0.342 Sum_probs=87.4
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHc-CCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL-DANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~-~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
.|++|.++|+|+|+++|. +++|||++|||+++ |...++.+++++ +.|+++||.||+.... + +.....
T Consensus 41 ~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~-~----~~~~~~ 108 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGS-T----GGQPTP 108 (157)
T ss_pred ecchhhHHHHHHHHHhcC-----CCcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCccccc-c----CCcCCC
Confidence 688999999999999985 38899999999997 555779999888 4999999977763211 0 000000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
...++...++++||+.++ .+ ++.+++.+++
T Consensus 109 -----------------------------------------------~~~~d~~~lA~a~G~~~~-~v--~~~~el~~al 138 (157)
T cd02001 109 -----------------------------------------------SSNVNLEAWAAACGYLVL-SA--PLLGGLGSEF 138 (157)
T ss_pred -----------------------------------------------CCCCCHHHHHHHCCCceE-Ec--CCHHHHHHHH
Confidence 002344556899999976 33 6899999999
Q ss_pred HHhHcCCCCCcEEEEEEecCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG 431 (767)
+++.+ .++|++|++.+.++
T Consensus 139 ~~a~~--~~gp~vi~v~i~~~ 157 (157)
T cd02001 139 AGLLA--TTGPTLLHAPIAPG 157 (157)
T ss_pred HHHHh--CCCCEEEEEEecCC
Confidence 99986 57999999998764
No 87
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.22 E-value=1.5e-10 Score=112.13 Aligned_cols=126 Identities=24% Similarity=0.300 Sum_probs=100.9
Q ss_pred ChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEee-chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCC
Q 004227 497 GLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGP 575 (767)
Q Consensus 497 gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t-ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~ 575 (767)
.+-...++.|++.+..++.|++++++|.|++..|.+|++.+ +.+|+.++++++. .++..++||+++....+..+.++.
T Consensus 25 ~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~~Pvl~i~~~~~~~~~~~~ 103 (154)
T cd06586 25 SLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEHLPVVFLIGARGISAQAKQ 103 (154)
T ss_pred HHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcCCCEEEEeCCCChhhhccC
Confidence 34333345689999999999999999999999977888886 5999999999987 678889999999877775555677
Q ss_pred CCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecC
Q 004227 576 THCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPR 624 (767)
Q Consensus 576 TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r 624 (767)
+||..++..+++.+|++.+..|++.++.. .+..++. ...+|++|++|+
T Consensus 104 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 104 TFQSMFDLGMYRSIPEANISSPSPAELPA-GIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred cccccCHHHHHHHhhheEEEeCCHHHHHH-HHHHHHHHHhcCCCCEEEEccC
Confidence 89999999999999999888887765544 3444443 246799998864
No 88
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.21 E-value=1e-10 Score=117.69 Aligned_cols=118 Identities=24% Similarity=0.331 Sum_probs=87.3
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcc
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
.|++|.++|+|+|+++|. +++|||++|||+++ +..+++.+|++++ +|+++||.||+....- +....
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~--m~~~el~ta~~~~~~pv~~vV~NN~~yg~~-----~~q~~- 107 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLL--MNLGVLPTIAAESPKNLILVILDNGAYGST-----GNQPT- 107 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHH--hhhhHHHHHHHhCCCCeEEEEEeCCccccc-----cCcCC-
Confidence 588999999999999984 77899999999998 4458899999888 5999999888742210 00000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+ ..-..+...++++||+.+... .++.++|.+++
T Consensus 108 ------------------------------~---------------~~~~~d~~~lA~a~G~~~~~~--v~~~~~l~~al 140 (181)
T TIGR03846 108 ------------------------------P---------------ASRRTDLELVAKAAGIRNVEK--VADEEELRDAL 140 (181)
T ss_pred ------------------------------C---------------CCCCCCHHHHHHHCCCCeEEE--eCCHHHHHHHH
Confidence 0 000134456689999987632 46899999999
Q ss_pred HHhHcCCCCCcEEEEEEecCCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+ +.+ .++|.+|++.+.++.
T Consensus 141 ~-a~~--~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 141 K-ALA--MKGPTFIHVKVKPGN 159 (181)
T ss_pred H-HHc--CCCCEEEEEEeCCCC
Confidence 7 665 579999999987554
No 89
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.18 E-value=4.8e-11 Score=119.30 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=89.8
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.|.|.+|.++|+|+|+++|. +++|||++|||+++ +...+|.+|.++++|+++||-||+....-...+. .
T Consensus 48 ~g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~---~- 116 (175)
T cd02009 48 RGASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQ---A- 116 (175)
T ss_pred CCccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCchheeccC---C-
Confidence 35578899999999999984 78899999999998 6678899999999999999988874221000000 0
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
+....| . . .. .....++...++++||+++.. + ++.+++.++
T Consensus 117 -----------~~~~~~---------------------~-~--~~-~~~~~~d~~~lA~a~G~~~~~-v--~~~~el~~a 157 (175)
T cd02009 117 -----------SFEDEF---------------------E-R--LF-GTPQGLDFEHLAKAYGLEYRR-V--SSLDELEQA 157 (175)
T ss_pred -----------cccchh---------------------h-h--hh-cCCCCCCHHHHHHHcCCCeee-C--CCHHHHHHH
Confidence 000000 0 0 00 000124567789999998763 4 589999999
Q ss_pred HHHhHcCCCCCcEEEEEEe
Q 004227 410 FQRVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T 428 (767)
++++.+ .++|++|++.+
T Consensus 158 l~~a~~--~~~p~lIev~v 174 (175)
T cd02009 158 LESALA--QDGPHVIEVKT 174 (175)
T ss_pred HHHHHh--CCCCEEEEEeC
Confidence 999986 58999999976
No 90
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.17 E-value=8.1e-11 Score=137.08 Aligned_cols=129 Identities=21% Similarity=0.252 Sum_probs=96.6
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|.+|.++|+|+|+++|. +++.|||++|||+++ |..+.|.+|.++++|+++||.||+..
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~------------- 465 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGY------------- 465 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCcc-------------
Confidence 36789999999999999986 689999999999999 88899999999999999999999852
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
+.+|.+.+.. ..-..+..++..+.+..++|+||+... .++ +.++|.++
T Consensus 466 -----------------g~v~~~q~~~------------~~~~~~~~~~~~~~f~klAea~G~~g~-~v~--~~~el~~a 513 (550)
T COG0028 466 -----------------GMVRQWQELF------------YGGRYSGTDLGNPDFVKLAEAYGAKGI-RVE--TPEELEEA 513 (550)
T ss_pred -----------------ccchHHHHHh------------cCCCcceeecCCccHHHHHHHcCCeeE-EeC--CHHHHHHH
Confidence 1222221110 000001112222115677999999876 454 99999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG 431 (767)
|+++.+ .++|++|++.+.+.
T Consensus 514 l~~al~--~~~p~lidv~id~~ 533 (550)
T COG0028 514 LEEALA--SDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHHh--CCCCEEEEEEecCc
Confidence 999987 68999999999766
No 91
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.13 E-value=3.5e-10 Score=114.00 Aligned_cols=125 Identities=21% Similarity=0.212 Sum_probs=85.8
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|.++|+|+|+++|. ++++|+|++|||+++.. .+| +.+|.+++.|+++||-||+....-...+.. ...
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~-~~~- 119 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGP-EAS- 119 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccC-CcC-
Confidence 5688999999999999985 57899999999999743 445 778988888877777777632211100000 000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcC----CeEeeccCCCCHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELG----LYYIGPVDGHNVEDL 406 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G----~~~i~~vDGhdi~~l 406 (767)
+ .+....+...++++|| +++. ..++.+++
T Consensus 120 -------------------------------------------~-~~~~~~d~~~ia~a~G~~~~~~~~---~v~~~~el 152 (183)
T cd02005 120 -------------------------------------------Y-NDIANWNYTKLPEVFGGGGGGLSF---RVKTEGEL 152 (183)
T ss_pred -------------------------------------------c-ccCCCCCHHHHHHHhCCCccccEE---EecCHHHH
Confidence 0 0111234556789999 5654 33789999
Q ss_pred HHHHHHhHcCCCCCcEEEEEEecCC
Q 004227 407 VTIFQRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 407 ~~al~~a~~~~~~~P~lI~v~T~KG 431 (767)
.++++++.+ ..++|++|++.+.+.
T Consensus 153 ~~al~~a~~-~~~~p~liev~~~~~ 176 (183)
T cd02005 153 DEALKDALF-NRDKLSLIEVILPKD 176 (183)
T ss_pred HHHHHHHHh-cCCCcEEEEEEcCcc
Confidence 999999875 137899999998643
No 92
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.12 E-value=5.5e-10 Score=120.02 Aligned_cols=148 Identities=20% Similarity=0.290 Sum_probs=108.5
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCC-CeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCC
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKN-NNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPAT 328 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~-~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~ 328 (767)
.-....|.+++.|.|+++|.+.++++ ..|++++|||++.++-+ |+|++|..++.|+++||.||+. ...|..|..++.
T Consensus 66 ~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~-~~~TGgQ~S~~T 143 (300)
T PRK11864 66 VLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEA-YMNTGIQRSSST 143 (300)
T ss_pred ceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCee-eecCCCCCCCCC
Confidence 34577788999999999999888765 45666999999988875 9999999999999999999984 445666666666
Q ss_pred cchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 329 ~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.++..+. ...|.... + .+-..+..++|..|+..++--|..++.+
T Consensus 144 p~ga~t~t---------------------sp~G~~~~----k----------kdi~~i~~a~g~~yVA~~~~~~~~~~~~ 188 (300)
T PRK11864 144 PYGAWTTT---------------------TPGGKREH----K----------KPVPDIMAAHKVPYVATASIAYPEDFIR 188 (300)
T ss_pred cCCCcccc---------------------CCCCCcCC----C----------CCHHHHHHHcCCCEEEEEeCCCHHHHHH
Confidence 66643110 00111100 0 1123457889999988888889999999
Q ss_pred HHHHhHcCCCCCcEEEEEEec--CCCCCCh
Q 004227 409 IFQRVKEMPAPGPVLIHVVTE--KGKGYPP 436 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v~T~--KG~G~~~ 436 (767)
++++|.+ .+||.+|++.+. .++++.+
T Consensus 189 ~i~~A~~--~~Gps~I~~~spC~~~~~~~~ 216 (300)
T PRK11864 189 KLKKAKE--IRGFKFIHLLAPCPPGWRFDP 216 (300)
T ss_pred HHHHHHh--CCCCEEEEEeCCCCCCCCcCh
Confidence 9999987 579999999874 3444443
No 93
>PRK08322 acetolactate synthase; Reviewed
Probab=99.12 E-value=2.9e-09 Score=124.56 Aligned_cols=131 Identities=14% Similarity=0.243 Sum_probs=95.8
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.|.|.+|+++|+|+|+++|. ++++|||++|||+++ +...+|.+|.++++|+++||.||+...
T Consensus 403 ~~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g------------ 464 (547)
T PRK08322 403 NALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYG------------ 464 (547)
T ss_pred CCcccccchhHHHHHHHHhC----CCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcc------------
Confidence 35689999999999999985 688999999999999 677889999999999999998887421
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
.+|...+ ... .+.+.-++-.+++..++++||+++.. | ++.++|.++
T Consensus 465 ------------------~~~~~~~------------~~~-~~~~~~~~~~~df~~lA~a~G~~~~~-v--~~~~eL~~a 510 (547)
T PRK08322 465 ------------------MIRWKQE------------NMG-FEDFGLDFGNPDFVKYAESYGAKGYR-V--ESADDLLPT 510 (547)
T ss_pred ------------------hHHHHHH------------hhc-CCcccccCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHH
Confidence 1111000 000 00000111135677889999999763 3 689999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCCCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGKGY 434 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~G~ 434 (767)
++++.+ .++|++|+|.+......
T Consensus 511 l~~a~~--~~~p~lIev~v~~~~~~ 533 (547)
T PRK08322 511 LEEALA--QPGVHVIDCPVDYSEND 533 (547)
T ss_pred HHHHHh--CCCCEEEEEEecCccCc
Confidence 999876 57999999999755443
No 94
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.11 E-value=4.6e-10 Score=131.02 Aligned_cols=129 Identities=18% Similarity=0.270 Sum_probs=94.7
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.|.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+...
T Consensus 405 ~~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~------------ 466 (539)
T TIGR02418 405 NGMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYN------------ 466 (539)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcch------------
Confidence 35689999999999999986 588999999999999 777889999999999999998887421
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
.+|.. +..... +....++-..+...++++||+++.. | ++.++|.++
T Consensus 467 ------------------~~~~~------------~~~~~~-~~~~~~~~~~d~~~lA~a~G~~~~~-V--~~~~eL~~a 512 (539)
T TIGR02418 467 ------------------MVEFQ------------EEMKYQ-RSSGVDFGPIDFVKYAESFGAKGLR-V--ESPDQLEPT 512 (539)
T ss_pred ------------------HHHHH------------HHHhcC-CcccccCCCCCHHHHHHHCCCeEEE-E--CCHHHHHHH
Confidence 11100 000000 0000011235667889999998763 3 689999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
++++.+ .++|++|++.+.+..
T Consensus 513 l~~a~~--~~~p~lIev~v~~~~ 533 (539)
T TIGR02418 513 LRQAME--VEGPVVVDIPVDYSD 533 (539)
T ss_pred HHHHHh--CCCCEEEEEEecCcc
Confidence 999976 578999999986443
No 95
>PRK08266 hypothetical protein; Provisional
Probab=99.11 E-value=4e-10 Score=131.61 Aligned_cols=129 Identities=24% Similarity=0.369 Sum_probs=92.5
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|++++. ++++|||++|||+++. ..+++.+|.++++|+++||.||+...
T Consensus 400 ~~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~--~~~eL~ta~~~~lpv~ivv~NN~~y~------------- 460 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMF--GVQELATAVQHNIGVVTVVFNNNAYG------------- 460 (542)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 3589999999999998875 6889999999999995 57899999999999999988886321
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
.++..-+.. .+. + ...-++-.++...++++||..+. .| .+.++|.+++
T Consensus 461 -----------------~~~~~~~~~---~~~-------~--~~~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~al 508 (542)
T PRK08266 461 -----------------NVRRDQKRR---FGG-------R--VVASDLVNPDFVKLAESFGVAAF-RV--DSPEELRAAL 508 (542)
T ss_pred -----------------HHHHHHHHh---cCC-------C--cccCCCCCCCHHHHHHHcCCeEE-Ee--CCHHHHHHHH
Confidence 111000000 000 0 00001112456678999999876 34 4689999999
Q ss_pred HHhHcCCCCCcEEEEEEecCCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++.+ .++|++|++.|.++.
T Consensus 509 ~~a~~--~~~p~liev~i~~~~ 528 (542)
T PRK08266 509 EAALA--HGGPVLIEVPVPRGS 528 (542)
T ss_pred HHHHh--CCCcEEEEEEecCCC
Confidence 99876 578999999998775
No 96
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.10 E-value=3.2e-10 Score=115.27 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=89.2
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCc-ccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcch
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGA-MTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGa-l~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg 331 (767)
|.+|.++|+|+|+++|. ++++||+++|||+ ++ +...++.+|.+++.|+++||.||+....-...+.. ....+
T Consensus 51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~--m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~-~~~~~ 123 (193)
T cd03375 51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAA--IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASP-TTPEG 123 (193)
T ss_pred hhhccHHHHHHHHHHhC----CCCeEEEEeccchHhh--ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCC-CCCCC
Confidence 77888999999999885 7899999999999 44 55678999999999999999999742221100000 00000
Q ss_pred hhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHH
Q 004227 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (767)
Q Consensus 332 ~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~ 411 (767)
.- .. ....+. ..-..+...+++++|..++..+.-.+.+++.++++
T Consensus 124 ~~------~~---------------~~~~~~--------------~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~ 168 (193)
T cd03375 124 FK------TK---------------TTPYGN--------------IEEPFNPLALALAAGATFVARGFSGDIKQLKEIIK 168 (193)
T ss_pred Cc------cc---------------CCCCCC--------------CCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHH
Confidence 00 00 000000 00013445678999998753334578999999999
Q ss_pred HhHcCCCCCcEEEEEEec
Q 004227 412 RVKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 412 ~a~~~~~~~P~lI~v~T~ 429 (767)
++.+ .++|.+|++.+.
T Consensus 169 ~al~--~~gp~vIev~~~ 184 (193)
T cd03375 169 KAIQ--HKGFSFVEVLSP 184 (193)
T ss_pred HHHh--cCCCEEEEEECC
Confidence 9987 589999999864
No 97
>PRK07064 hypothetical protein; Provisional
Probab=99.09 E-value=3.6e-10 Score=131.95 Aligned_cols=130 Identities=19% Similarity=0.301 Sum_probs=94.3
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchh
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ 332 (767)
|++|.++|+|+|+++|. ++++|+|++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 405 g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~y---------------- 462 (544)
T PRK07064 405 GGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGY---------------- 462 (544)
T ss_pred CccccccchhhhhhhhC----cCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChh----------------
Confidence 78999999999999985 688999999999998 67788999999999999999888741
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHH
Q 004227 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (767)
Q Consensus 333 ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~ 412 (767)
+.+|.. +......+...-++-.++...++++||+++. .+ ++.++|.+++++
T Consensus 463 --------------g~~~~~------------~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al~~ 513 (544)
T PRK07064 463 --------------GVIRNI------------QDAQYGGRRYYVELHTPDFALLAASLGLPHW-RV--TSADDFEAVLRE 513 (544)
T ss_pred --------------HHHHHH------------HHHhcCCccccccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHH
Confidence 111111 0000000000111223566788999999876 33 689999999999
Q ss_pred hHcCCCCCcEEEEEEecCCCCCC
Q 004227 413 VKEMPAPGPVLIHVVTEKGKGYP 435 (767)
Q Consensus 413 a~~~~~~~P~lI~v~T~KG~G~~ 435 (767)
+.+ .++|++|+|.+.....++
T Consensus 514 a~~--~~~p~lIeV~~~~~~~~~ 534 (544)
T PRK07064 514 ALA--KEGPVLVEVDMLSIGPFA 534 (544)
T ss_pred HHc--CCCCEEEEEEcccccccC
Confidence 886 579999999987433333
No 98
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.09 E-value=5.2e-10 Score=131.69 Aligned_cols=128 Identities=20% Similarity=0.345 Sum_probs=94.4
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ +...++.+|.++++|+++||.||+....
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~~g~------------ 467 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNSTLGM------------ 467 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCcccc------------
Confidence 4689999999999999986 688999999999999 5567799999999999999999984211
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+|.... . .+. .....+.-..++..++++||+++. .| ++.++|.+++
T Consensus 468 ------------------i~~~q~-~---~~~---------~~~~~~~~~~df~~lA~a~G~~~~-~v--~~~~el~~al 513 (578)
T PRK06546 468 ------------------VKLEML-V---DGL---------PDFGTDHPPVDYAAIAAALGIHAV-RV--EDPKDVRGAL 513 (578)
T ss_pred ------------------HHHHHH-h---cCC---------CcccccCCCCCHHHHHHHCCCeeE-Ee--CCHHHHHHHH
Confidence 110000 0 000 000111223466778999999876 44 4899999999
Q ss_pred HHhHcCCCCCcEEEEEEecCCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++.+ .++|++|++.+.+..
T Consensus 514 ~~a~~--~~gp~lIev~~~~~~ 533 (578)
T PRK06546 514 REAFA--HPGPALVDVVTDPNA 533 (578)
T ss_pred HHHHh--CCCCEEEEEEeCCCc
Confidence 99886 589999999997553
No 99
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.08 E-value=5.9e-10 Score=131.43 Aligned_cols=130 Identities=12% Similarity=0.248 Sum_probs=95.3
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 434 ~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~------------- 494 (587)
T PRK06965 434 GGLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYL------------- 494 (587)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcc-------------
Confidence 35689999999999999996 688999999999998 77889999999999999999999842
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh-hc-cCCChhhhHhhcCCeEeeccCCCCHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-GL-ISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r-~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~ 407 (767)
+.+|...+.. .+. .+.. ++ ..++...+.++||+++.. | ++.++|.
T Consensus 495 -----------------~~i~~~q~~~---~~~----------~~~~~~~~~~~d~~~iA~a~G~~~~~-v--~~~~eL~ 541 (587)
T PRK06965 495 -----------------GMVRQWQEIE---YSK----------RYSHSYMDALPDFVKLAEAYGHVGMR-I--EKTSDVE 541 (587)
T ss_pred -----------------hHHHHHHHHh---cCC----------CccccCCCCCCCHHHHHHHCCCEEEE-E--CCHHHHH
Confidence 1111110000 000 0000 01 124667789999998763 3 6899999
Q ss_pred HHHHHhHcCCCCCcEEEEEEecCCC
Q 004227 408 TIFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 408 ~al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
++++++.+. .++|++|+|.+.+..
T Consensus 542 ~al~~a~~~-~~~p~lieV~i~~~~ 565 (587)
T PRK06965 542 PALREALRL-KDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHHHHhc-CCCcEEEEEEecccc
Confidence 999998752 368999999997544
No 100
>PRK07524 hypothetical protein; Provisional
Probab=99.08 E-value=6e-10 Score=129.94 Aligned_cols=129 Identities=21% Similarity=0.254 Sum_probs=94.8
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ +...++.+|.++++|+++||.||+..
T Consensus 405 ~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~-------------- 464 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGY-------------- 464 (535)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCch--------------
Confidence 5689999999999999985 689999999999998 55677999999999999999999741
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+.+|...+.. +. .....++-.++...++++||+++. .+ .+.++|.+++
T Consensus 465 ----------------g~i~~~~~~~----~~---------~~~~~~~~~~d~~~~A~a~G~~~~-~v--~~~~el~~al 512 (535)
T PRK07524 465 ----------------GEIRRYMVAR----DI---------EPVGVDPYTPDFIALARAFGCAAE-RV--ADLEQLQAAL 512 (535)
T ss_pred ----------------HHHHHHHHHh----cC---------CccccCCCCCCHHHHHHHCCCcEE-Ee--CCHHHHHHHH
Confidence 1122111000 00 000011223456778999999876 44 4899999999
Q ss_pred HHhHcCCCCCcEEEEEEecCCCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKGKG 433 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG~G 433 (767)
+++.+ .++|++|+|++.+-.+
T Consensus 513 ~~a~~--~~~p~liev~~~~~~~ 533 (535)
T PRK07524 513 RAAFA--RPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHh--CCCCEEEEEECCcccc
Confidence 99987 5899999999876543
No 101
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.08 E-value=6.7e-10 Score=116.34 Aligned_cols=139 Identities=20% Similarity=0.308 Sum_probs=91.3
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcc-cCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAM-TAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
.|.+|.++++|+|.+++ .++++|||++|||++ + +..++|.+|.+++.|+++||.||+.... |..|.......
T Consensus 61 ~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~--m~~~eL~ta~~~~~pv~~vVlNN~~yg~-tg~q~~~~~~~ 133 (235)
T cd03376 61 AAAVASGIEAALKALGR----GKDITVVAFAGDGGTAD--IGFQALSGAAERGHDILYICYDNEAYMN-TGIQRSGSTPY 133 (235)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHh--hHHHHHHHHHHcCCCeEEEEECCccccc-CCCCCCCCCCC
Confidence 36788888888887655 468999999999995 5 5678899999999999999999985331 11111111000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+... ..+ ..+... . -...-.++...+++++|+.++..++.++.+++.+++
T Consensus 134 ~~~~------~~~---------------~~g~~~---~------~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al 183 (235)
T cd03376 134 GAWT------TTT---------------PVGKVS---F------GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKV 183 (235)
T ss_pred CCEe------ecC---------------CCCccc---c------ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHH
Confidence 0000 000 000000 0 000011355677999999987656778999999999
Q ss_pred HHhHcCCCCCcEEEEEEec
Q 004227 411 QRVKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~ 429 (767)
+++.+ .++|++|++.+.
T Consensus 184 ~~a~~--~~gP~lIev~~~ 200 (235)
T cd03376 184 KKALS--IEGPAYIHILSP 200 (235)
T ss_pred HHHHh--CCCCEEEEEECC
Confidence 99987 578999999863
No 102
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.08 E-value=5.8e-10 Score=130.71 Aligned_cols=128 Identities=17% Similarity=0.248 Sum_probs=93.0
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ +..+++.+|.++++|+++||.||+...
T Consensus 413 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~------------- 473 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLLF----PERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYG------------- 473 (557)
T ss_pred CCccccchHHHHHHHHHhC----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 3588999999999999885 688999999999998 788999999999999999999998421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
.++..-+. ..+... ...++-..+...++++||+.+. .+ ++.+++.+++
T Consensus 474 -----------------~~~~~~~~---~~~~~~---------~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~el~~al 521 (557)
T PRK08199 474 -----------------TIRMHQER---EYPGRV---------SGTDLTNPDFAALARAYGGHGE-TV--ERTEDFAPAF 521 (557)
T ss_pred -----------------HHHHHHHH---hcCCcc---------ccccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 11100000 000000 0001112456678999999876 44 4789999999
Q ss_pred HHhHcCCCCCcEEEEEEecCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG 431 (767)
+++.+ .++|++|+|.|.+.
T Consensus 522 ~~a~~--~~gp~li~v~~~~~ 540 (557)
T PRK08199 522 ERALA--SGKPALIEIRIDPE 540 (557)
T ss_pred HHHHh--CCCCEEEEEEeCHH
Confidence 99886 57999999999653
No 103
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.08 E-value=4.7e-10 Score=131.29 Aligned_cols=126 Identities=17% Similarity=0.320 Sum_probs=93.8
Q ss_pred CCcccchhHHHHHHHHHHHHHcCC-CCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGK-NNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~-~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
+.|++|.++++|+|+++|. + +++|||++|||+++ +...+|.+|.++++|+++||.||+...
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~g------------ 455 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKLG------------ 455 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCccc------------
Confidence 4689999999999999985 4 78999999999999 777899999999999999998887421
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
.+|.. +... ..+.+..++-.++...++++||.++.. + ++.++|..+
T Consensus 456 ------------------~i~~~------------q~~~-~~~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~el~~a 501 (549)
T PRK06457 456 ------------------MIKFE------------QEVM-GYPEWGVDLYNPDFTKIAESIGFKGFR-L--EEPKEAEEI 501 (549)
T ss_pred ------------------hHHHH------------HHHh-cCCcccccCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHH
Confidence 11100 0000 000001112235677889999999863 3 589999999
Q ss_pred HHHhHcCCCCCcEEEEEEecC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~K 430 (767)
++++.+ .++|++|+|.+.+
T Consensus 502 l~~a~~--~~~p~lIeV~i~~ 520 (549)
T PRK06457 502 IEEFLN--TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHHh--CCCCEEEEEEeCc
Confidence 999986 5789999999964
No 104
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.07 E-value=5.4e-10 Score=131.45 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=94.0
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+... .
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g--------~---- 467 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVLG--------F---- 467 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCccc--------c----
Confidence 5688999999999999985 688999999999998 777889999999999999998887421 0
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
++.. +.. ........++-..+...++++||+++.. | ++.++|.+++
T Consensus 468 ------------------i~~~------------~~~-~~~~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~eL~~al 513 (574)
T PRK09124 468 ------------------VAME------------MKA-GGYLTDGTDLHNPDFAAIAEACGITGIR-V--EKASELDGAL 513 (574)
T ss_pred ------------------HHHH------------HHh-cCCccccCcCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHH
Confidence 0000 000 0000000112234667889999998763 3 6899999999
Q ss_pred HHhHcCCCCCcEEEEEEecCCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~~p~lIev~i~~~~ 533 (574)
T PRK09124 514 QRAFA--HDGPALVDVVTAKQE 533 (574)
T ss_pred HHHHh--CCCCEEEEEEecCcc
Confidence 99886 578999999986544
No 105
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.07 E-value=7e-10 Score=131.01 Aligned_cols=127 Identities=18% Similarity=0.244 Sum_probs=94.1
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 428 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y-------------- 487 (595)
T PRK09107 428 GLGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYM-------------- 487 (595)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 5689999999999999985 688999999999998 77788999999999999999999842
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
+.+|...... .+... ..... -.++...++++||.+... | .+.++|.++
T Consensus 488 ----------------~~i~~~q~~~---~~~~~---------~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~el~~a 536 (595)
T PRK09107 488 ----------------GMVRQWQQLL---HGNRL---------SHSYTEAMPDFVKLAEAYGAVGIR-C--EKPGDLDDA 536 (595)
T ss_pred ----------------HHHHHHHHHH---hCCcc---------ccccCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHHH
Confidence 2222111000 00000 00000 124667789999998763 3 689999999
Q ss_pred HHHhHcCCCCCcEEEEEEecC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~K 430 (767)
++++.+ .++|++|+|.+.+
T Consensus 537 l~~a~~--~~~p~lIeV~i~~ 555 (595)
T PRK09107 537 IQEMID--VDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHh--CCCCEEEEEEecC
Confidence 999876 5799999999874
No 106
>PRK05858 hypothetical protein; Provisional
Probab=99.07 E-value=8.4e-10 Score=128.96 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=94.7
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|+++++|+|+++|. ++++|||++|||+++ +...++.+|.++++|+++||.||+..
T Consensus 405 ~~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y-------------- 464 (542)
T PRK05858 405 PFGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIW-------------- 464 (542)
T ss_pred CccccccchhHHHHHHHhC----CCCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCch--------------
Confidence 4588999999999999986 689999999999999 77788999999999999999999742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhcc-CCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~-~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
+.+|..... ..+.. ...++. ..+..++.++||..+. .| .+.++|.++
T Consensus 465 ----------------~~~~~~~~~---~~~~~----------~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~a 512 (542)
T PRK05858 465 ----------------GLEKHPMEA---LYGYD----------VAADLRPGTRYDEVVRALGGHGE-LV--TVPAELGPA 512 (542)
T ss_pred ----------------hhHHHHHHH---hcCCc----------cccccCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHH
Confidence 111111000 00000 001121 3566788999999875 34 589999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
++++.+ .++|++|++.|.+..
T Consensus 513 l~~a~~--~~~p~lIev~~~~~~ 533 (542)
T PRK05858 513 LERAFA--SGVPYLVNVLTDPSV 533 (542)
T ss_pred HHHHHh--CCCcEEEEEEECCCc
Confidence 999876 579999999997553
No 107
>PRK08611 pyruvate oxidase; Provisional
Probab=99.07 E-value=7.1e-10 Score=130.47 Aligned_cols=128 Identities=21% Similarity=0.279 Sum_probs=94.5
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++++|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 406 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~-------------- 465 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQL-------------- 465 (576)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 4588999999999999985 688999999999999 67788999999999999988888741
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+.+|.. +... ....+..++-..+...++++||.++.. | ++.++|.+++
T Consensus 466 ----------------g~i~~~------------q~~~-~~~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~eL~~al 513 (576)
T PRK08611 466 ----------------AFIKYE------------QQAA-GELEYAIDLSDMDYAKFAEACGGKGYR-V--EKAEELDPAF 513 (576)
T ss_pred ----------------hHHHHH------------HHHh-cCCcccccCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHH
Confidence 111100 0000 000011112235677889999998763 3 7899999999
Q ss_pred HHhHcCCCCCcEEEEEEecCCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 514 EEALA--QDKPVIIDVYVDPNA 533 (576)
T ss_pred HHHHh--CCCCEEEEEEeCCcc
Confidence 99886 589999999997544
No 108
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.05 E-value=9.2e-10 Score=128.77 Aligned_cols=128 Identities=20% Similarity=0.325 Sum_probs=94.3
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|+|++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 399 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~-------------- 458 (548)
T PRK08978 399 GLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRL-------------- 458 (548)
T ss_pred chhhhhchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 5588999999999999985 688999999999998 66788999999999999999999742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH-hhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.+|..-+. ..+. .+. .++ -..+...++++||+++.. + .+.++|.+
T Consensus 459 ----------------~~~~~~~~~---~~~~----------~~~~~~~~~~~d~~~la~a~G~~~~~-v--~~~~el~~ 506 (548)
T PRK08978 459 ----------------GMVRQWQQL---FFDE----------RYSETDLSDNPDFVMLASAFGIPGQT-I--TRKDQVEA 506 (548)
T ss_pred ----------------HHHHHHHHH---HhCC----------cceecCCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHH
Confidence 111111000 0000 000 011 124667889999998764 3 68999999
Q ss_pred HHHHhHcCCCCCcEEEEEEecCCC
Q 004227 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++++.+ .++|.+|++.+.+..
T Consensus 507 al~~a~~--~~~p~lIeV~id~~~ 528 (548)
T PRK08978 507 ALDTLLN--SEGPYLLHVSIDELE 528 (548)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999876 579999999997543
No 109
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.05 E-value=1e-09 Score=129.09 Aligned_cols=129 Identities=18% Similarity=0.257 Sum_probs=93.7
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|+ ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~y-------------- 478 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYL-------------- 478 (574)
T ss_pred CccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchh--------------
Confidence 5588999999999999995 688999999999998 77889999999999999999999842
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
+.+|...+.. .+.. ....++ -.++...++++||.+... | .+.++|.++
T Consensus 479 ----------------g~i~~~q~~~---~~~~---------~~~~~~~~~~d~~~iA~a~G~~g~~-v--~~~~eL~~a 527 (574)
T PRK07979 479 ----------------GMVKQWQDMI---YSGR---------HSQSYMQSLPDFVRLAEAYGHVGIQ-I--SHPDELESK 527 (574)
T ss_pred ----------------hHHHHHHHHh---cCCc---------cccccCCCCCCHHHHHHHCCCEEEE-E--CCHHHHHHH
Confidence 2222110000 0000 000011 124667889999988663 3 689999999
Q ss_pred HHHhHcC-CCCCcEEEEEEecC
Q 004227 410 FQRVKEM-PAPGPVLIHVVTEK 430 (767)
Q Consensus 410 l~~a~~~-~~~~P~lI~v~T~K 430 (767)
++++.+. ..++|.+|+|.+.+
T Consensus 528 l~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 528 LSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred HHHHHhccCCCCcEEEEEEECC
Confidence 9988752 13789999999864
No 110
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.05 E-value=1.1e-09 Score=128.86 Aligned_cols=128 Identities=17% Similarity=0.253 Sum_probs=93.3
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ +...++.+|.++++|+++||.||+...
T Consensus 420 ~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~------------- 480 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLG------------- 480 (570)
T ss_pred CcccccchhhHHHhhHhhc----CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccH-------------
Confidence 5589999999999999985 688999999999997 666789999999999999999998421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
.++...... .+.. ....+.-..+...+.++||.+.. .| ++.+++.+++
T Consensus 481 -----------------~~~~~q~~~---~~~~---------~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~~l~~al 528 (570)
T PRK06725 481 -----------------MVRQWQEMF---YENR---------LSESKIGSPDFVKVAEAYGVKGL-RA--TNSTEAKQVM 528 (570)
T ss_pred -----------------HHHHHHHHh---cCCc---------cccCcCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 111000000 0000 00001112456678999999876 34 6899999999
Q ss_pred HHhHcCCCCCcEEEEEEecCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG 431 (767)
+++.+ .++|++|++.+...
T Consensus 529 ~~a~~--~~~p~liev~id~~ 547 (570)
T PRK06725 529 LEAFA--HEGPVVVDFCVEEG 547 (570)
T ss_pred HHHHh--CCCCEEEEEEeCCc
Confidence 99986 58999999998653
No 111
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.04 E-value=3e-10 Score=133.71 Aligned_cols=129 Identities=22% Similarity=0.356 Sum_probs=92.6
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
|.|++|.++|+|+|+++|. ++++|||++|||+++ +..++|++|.++++|+++||.||+....-...++..
T Consensus 435 g~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~---- 504 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAETVK---- 504 (578)
T ss_pred CccccccHHHHHHHHHhhC----CCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccc----
Confidence 5688999999999998874 688999999999997 888999999999999999999997311100000000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
| +... ...+.-..+...++++||+.+. .+ ++.++|.+++
T Consensus 505 ---------------~--------------~~~~---------~~~~~~~~d~~~~A~a~G~~~~-~v--~~~~el~~al 543 (578)
T PRK06112 505 ---------------F--------------GTHT---------DACHFAAVDHAAIARACGCDGV-RV--EDPAELAQAL 543 (578)
T ss_pred ---------------c--------------CCcc---------ccCcCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 0 0000 0001112345567999999876 34 5799999999
Q ss_pred HHhHcCCCCCcEEEEEEecCCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++.+ .++|++|+|++.+..
T Consensus 544 ~~a~~--~~gp~lIev~~~~~~ 563 (578)
T PRK06112 544 AAAMA--APGPTLIEVITDPSA 563 (578)
T ss_pred HHHHh--CCCCEEEEEEcCccc
Confidence 99876 579999999997543
No 112
>PLN02470 acetolactate synthase
Probab=99.04 E-value=1e-09 Score=129.45 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=93.8
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|+|++|||+++ |...+|.+|.++++|+++||-||+..
T Consensus 424 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~y-------------- 483 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHL-------------- 483 (585)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 5588999999999999986 688999999999998 77789999999999999999888742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+.+|...+.. .+......... .........++...++++||.++.. | ++.++|.+++
T Consensus 484 ----------------g~i~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~d~~~iA~a~G~~~~~-v--~~~~el~~al 540 (585)
T PLN02470 484 ----------------GMVVQWEDRF---YKANRAHTYLG-DPDAEAEIFPDFLKFAEGCKIPAAR-V--TRKSDLREAI 540 (585)
T ss_pred ----------------hHHHHHHHHH---hCCceeeeecC-ccccccCCCCCHHHHHHHCCCeEEE-E--CCHHHHHHHH
Confidence 1111110000 00000000000 0000000114567789999998763 3 6899999999
Q ss_pred HHhHcCCCCCcEEEEEEecCCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++.+ .++|.+|+|.+.+..
T Consensus 541 ~~a~~--~~~p~lieV~i~~~~ 560 (585)
T PLN02470 541 QKMLD--TPGPYLLDVIVPHQE 560 (585)
T ss_pred HHHHh--CCCCEEEEEEeCCcc
Confidence 99986 579999999997543
No 113
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.04 E-value=1.1e-09 Score=128.80 Aligned_cols=128 Identities=21% Similarity=0.272 Sum_probs=93.8
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+...
T Consensus 419 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~yg------------- 479 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTLG------------- 479 (572)
T ss_pred CcccccchhHHHHHHHHhC----CCCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCchH-------------
Confidence 5689999999999999985 588999999999999 667889999999999999999998421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhcc-CCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~-~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
.+|..-+.. .+.. ....++. ..++..++++||.++.. | ++.++|.++
T Consensus 480 -----------------~i~~~q~~~---~~~~---------~~~~~~~~~~d~~~~A~a~G~~~~~-v--~~~~eL~~a 527 (572)
T PRK06456 480 -----------------LVRQVQDLF---FGKR---------IVGVDYGPSPDFVKLAEAFGALGFN-V--TTYEDIEKS 527 (572)
T ss_pred -----------------HHHHHHHHh---hCCC---------cccccCCCCCCHHHHHHHCCCeeEE-e--CCHHHHHHH
Confidence 111110000 0000 0000111 24667889999988763 3 689999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG 431 (767)
++++.+ .++|.+|+|.+.+.
T Consensus 528 l~~a~~--~~~p~lIev~v~~~ 547 (572)
T PRK06456 528 LKSAIK--EDIPAVIRVPVDKE 547 (572)
T ss_pred HHHHHh--CCCCEEEEEEeCcc
Confidence 999976 57999999998753
No 114
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.04 E-value=4.5e-09 Score=123.54 Aligned_cols=128 Identities=19% Similarity=0.213 Sum_probs=93.3
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.-
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~~------------ 482 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIYR------------ 482 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHHH------------
Confidence 4589999999999999982 78899999999999 7778899999999999999999973100
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhcc-CCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~-~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
...+. . .+. . +...-++. ..++..++++||+++.. | ++.++|.++
T Consensus 483 -----~~~~~---------------~---~~~------~--~~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~el~~a 528 (569)
T PRK09259 483 -----GDDVN---------------L---SGA------G--DPSPTVLVHHARYDKMMEAFGGVGYN-V--TTPDELRHA 528 (569)
T ss_pred -----HHHHH---------------h---hcC------C--CccccccCCCCCHHHHHHHCCCeEEE-E--CCHHHHHHH
Confidence 00000 0 000 0 00000111 34567789999998763 3 689999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGKG 433 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~G 433 (767)
++++.+ .++|++|+|.+.+..+
T Consensus 529 l~~a~~--~~~p~lIev~id~~~~ 550 (569)
T PRK09259 529 LTEAIA--SGKPTLINVVIDPAAG 550 (569)
T ss_pred HHHHHh--CCCCEEEEEEECCCCC
Confidence 999876 5899999999976554
No 115
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.04 E-value=1e-09 Score=130.21 Aligned_cols=129 Identities=20% Similarity=0.285 Sum_probs=94.3
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ |...++.+|.++++|+++||.||+..
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~-------------- 491 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQ-------------- 491 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcc--------------
Confidence 5688999999999999986 688999999999999 77788999999999999999999842
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc--cCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL--ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~--~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.++..-+.. .+.. ....++ -..+...++++||.++. .| ++.++|.+
T Consensus 492 ----------------g~i~~~q~~~---~~~~---------~~~~~~~~~~~d~~~~A~a~G~~g~-~V--~~~~el~~ 540 (616)
T PRK07418 492 ----------------GMVRQWQESF---YGER---------YSASNMEPGMPDFVKLAEAFGVKGM-VI--SERDQLKD 540 (616)
T ss_pred ----------------hHHHHHHHHh---cCCC---------ceeecCCCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHH
Confidence 1111110000 0000 000011 12456778999999876 34 58999999
Q ss_pred HHHHhHcCCCCCcEEEEEEecCCC
Q 004227 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++++.+ .++|++|+|.+.+..
T Consensus 541 al~~a~~--~~~p~lIeV~i~~~~ 562 (616)
T PRK07418 541 AIAEALA--HDGPVLIDVHVRRDE 562 (616)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999876 578999999997543
No 116
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.03 E-value=1e-09 Score=129.42 Aligned_cols=138 Identities=22% Similarity=0.276 Sum_probs=93.7
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 416 ~~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~y-------------- 475 (588)
T TIGR01504 416 QAGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYL-------------- 475 (588)
T ss_pred ccccccchHhHHHhhhhhC----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 4588999999999999985 688999999999998 66788999999999999999999842
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhh--cCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQ--IGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~--~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.+|......... .+........ ...+....++..++|+||.+... | ++.++|.+
T Consensus 476 ----------------g~i~~~q~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~lA~a~G~~~~~-V--~~~~eL~~ 532 (588)
T TIGR01504 476 ----------------GLIRQAQRAFDMDYCVQLAFENINS----SEVNGYGVDHVKVAEGLGCKAIR-V--FKPEEIAP 532 (588)
T ss_pred ----------------HHHHHHHHHhcccccceeecccccc----ccccCCCCCHHHHHHHCCCEEEE-E--CCHHHHHH
Confidence 1111110000000 0000000000 00001135667889999998763 3 68999999
Q ss_pred HHHHhHcC--CCCCcEEEEEEecCC
Q 004227 409 IFQRVKEM--PAPGPVLIHVVTEKG 431 (767)
Q Consensus 409 al~~a~~~--~~~~P~lI~v~T~KG 431 (767)
+++++.+. ..++|++|+|.+.+.
T Consensus 533 al~~a~~~~~~~~~p~lIeV~i~~~ 557 (588)
T TIGR01504 533 AFEQAKALMAEHRVPVVVEVILERV 557 (588)
T ss_pred HHHHHHhhcccCCCcEEEEEEeccc
Confidence 99998631 147999999998644
No 117
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.03 E-value=1.2e-09 Score=128.57 Aligned_cols=129 Identities=16% Similarity=0.258 Sum_probs=93.3
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y-------------- 478 (572)
T PRK08979 419 GLGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFL-------------- 478 (572)
T ss_pred CcccccchhhHHHhhhhhC----CCCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCcc--------------
Confidence 4588999999999999985 688999999999999 77788999999999999999999842
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
+.+|...... .+... ....+ ..+++.++.++||.+... | .+.++|.++
T Consensus 479 ----------------~~i~~~q~~~---~~~~~---------~~~~~~~~~d~~~~A~a~G~~~~~-v--~~~~eL~~a 527 (572)
T PRK08979 479 ----------------GMVKQWQDMI---YQGRH---------SHSYMDSVPDFAKIAEAYGHVGIR-I--SDPDELESG 527 (572)
T ss_pred ----------------HHHHHHHHHH---hCCcc---------cccCCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHHH
Confidence 1122110000 00000 00001 124667889999988653 3 689999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG 431 (767)
++++.+. .++|.+|+|.+.+.
T Consensus 528 l~~a~~~-~~~p~lIev~i~~~ 548 (572)
T PRK08979 528 LEKALAM-KDRLVFVDINVDET 548 (572)
T ss_pred HHHHHhc-CCCcEEEEEEeCCc
Confidence 9998752 37899999998643
No 118
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.03 E-value=1.4e-09 Score=128.08 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=94.0
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |....|.+|.++++|+++||.||+..
T Consensus 421 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y-------------- 480 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGAL-------------- 480 (574)
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 5589999999999999986 688999999999999 77789999999999999999998742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH-hhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.+|...+.. .+. .+. .++ -.++...++++||.++.. + .+.++|.+
T Consensus 481 ----------------~~i~~~q~~~---~~~----------~~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~el~~ 528 (574)
T PRK06466 481 ----------------GMVRQWQDMQ---YEG----------RHSHSYMESLPDFVKLAEAYGHVGIR-I--TDLKDLKP 528 (574)
T ss_pred ----------------HHHHHHHHHh---cCC----------ceeecCCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHH
Confidence 1111110000 000 000 001 124667789999988763 3 68999999
Q ss_pred HHHHhHcCCCCCcEEEEEEecCCC
Q 004227 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+|+++.+. .++|++|++.+.+..
T Consensus 529 al~~a~~~-~~~p~lIev~i~~~~ 551 (574)
T PRK06466 529 KLEEAFAM-KDRLVFIDIYVDRSE 551 (574)
T ss_pred HHHHHHhc-CCCcEEEEEEeCCcc
Confidence 99988752 278999999997543
No 119
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.02 E-value=1.5e-09 Score=127.78 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=93.5
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|.++|+|+|+++|. ++++|||++|||+++ +..++|.+|.++++|+++||.||+..
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~-------------- 478 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFL-------------- 478 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchh--------------
Confidence 5688999999999999985 578999999999998 66789999999999999999999841
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
+.+|...... .+... ..... -.++...+.++||+.+.. + ++.++|..+
T Consensus 479 ----------------~~i~~~q~~~---~~~~~---------~~~~~~~~~d~~~la~a~G~~~~~-v--~~~~eL~~a 527 (574)
T PRK06882 479 ----------------GMVKQWQDLI---YSGRH---------SQVYMNSLPDFAKLAEAYGHVGIQ-I--DTPDELEEK 527 (574)
T ss_pred ----------------HHHHHHHHHh---cCCcc---------cccCCCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHH
Confidence 1122110000 00000 00000 123556789999998763 3 689999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
++++.+. .++|++|+|.+.+..
T Consensus 528 l~~a~~~-~~~p~liev~i~~~~ 549 (574)
T PRK06882 528 LTQAFSI-KDKLVFVDVNVDETE 549 (574)
T ss_pred HHHHHhc-CCCcEEEEEEecCcc
Confidence 9998763 368999999997543
No 120
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.02 E-value=1.4e-09 Score=127.69 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=92.4
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+...
T Consensus 412 ~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~~~------------- 472 (563)
T PRK08527 412 GLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNFLG------------- 472 (563)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCcch-------------
Confidence 5589999999999999985 578899999999999 566679999999999999998887421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
.+|...... .+.... .-++ ...+...++++||.++. .+ ++.++|.++
T Consensus 473 -----------------~i~~~~~~~---~~~~~~---------~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~el~~a 520 (563)
T PRK08527 473 -----------------MVRQWQTFF---YEERYS---------ETDLSTQPDFVKLAESFGGIGF-RV--TTKEEFDKA 520 (563)
T ss_pred -----------------hHHHHHHhh---cCCcee---------eccCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHH
Confidence 111110000 000000 0011 12355678999999876 33 689999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
|+++.+ .++|.+|+|.+.+..
T Consensus 521 l~~a~~--~~~p~lieV~v~~~~ 541 (563)
T PRK08527 521 LKEALE--SDKVALIDVKIDRFE 541 (563)
T ss_pred HHHHHh--CCCCEEEEEEECCcc
Confidence 999876 579999999997644
No 121
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.02 E-value=1.5e-09 Score=127.30 Aligned_cols=127 Identities=20% Similarity=0.288 Sum_probs=93.6
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 412 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y-------------- 471 (561)
T PRK06048 412 GLGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYL-------------- 471 (561)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCcc--------------
Confidence 5588999999999999985 688999999999998 77788999999999999999888741
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH-hhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.+|...+.. .+. .+. -++ -..+...++++||.++.. + ++.++|.+
T Consensus 472 ----------------~~i~~~~~~~---~~~----------~~~~~~~~~~~d~~~lA~a~G~~~~~-v--~t~~el~~ 519 (561)
T PRK06048 472 ----------------GMVRQWQELF---YDK----------RYSHTCIKGSVDFVKLAEAYGALGLR-V--EKPSEVRP 519 (561)
T ss_pred ----------------HHHHHHHHHH---cCC----------cccccCCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHH
Confidence 1122110000 000 000 011 124667889999998763 3 68999999
Q ss_pred HHHHhHcCCCCCcEEEEEEecCC
Q 004227 409 IFQRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v~T~KG 431 (767)
+++++.+ .++|++|++.+.+.
T Consensus 520 al~~a~~--~~~p~liev~~~~~ 540 (561)
T PRK06048 520 AIEEAVA--SDRPVVIDFIVECE 540 (561)
T ss_pred HHHHHHh--CCCCEEEEEEecCc
Confidence 9999976 57999999998753
No 122
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.02 E-value=1.6e-09 Score=127.84 Aligned_cols=130 Identities=18% Similarity=0.269 Sum_probs=93.6
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 427 ~~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y------------- 487 (585)
T CHL00099 427 AGLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQ------------- 487 (585)
T ss_pred ccccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcc-------------
Confidence 35689999999999999986 588999999999998 77788999999999999999999841
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
+.+|...+.. .+...... ..+.-..+...+.++||.++. .+ ++.++|.++
T Consensus 488 -----------------~~i~~~q~~~---~~~~~~~~-------~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~a 537 (585)
T CHL00099 488 -----------------GMVRQWQQAF---YGERYSHS-------NMEEGAPDFVKLAEAYGIKGL-RI--KSRKDLKSS 537 (585)
T ss_pred -----------------hHHHHHHHHh---cCCCcccc-------cCCCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHH
Confidence 1111110000 00000000 000002355678999999876 34 579999999
Q ss_pred HHHhHcCCCCCcEEEEEEecC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~K 430 (767)
++++.+ .++|.+|+|.+..
T Consensus 538 l~~a~~--~~~p~liev~v~~ 556 (585)
T CHL00099 538 LKEALD--YDGPVLIDCQVIE 556 (585)
T ss_pred HHHHHh--CCCCEEEEEEECC
Confidence 999886 5799999999974
No 123
>PRK06154 hypothetical protein; Provisional
Probab=99.01 E-value=7.8e-10 Score=129.86 Aligned_cols=129 Identities=21% Similarity=0.211 Sum_probs=93.6
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+.... ..
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~--------~~-- 492 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGG--------YD-- 492 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccce--------ee--
Confidence 4588999999999999985 689999999999998 7778899999999999999999974221 00
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
.. +..... .....+ ..+++..+.++||.+.. .| ++.++|.+++
T Consensus 493 --------------------~~------------~~~~~~-~~~~~~-~~~df~~lA~a~G~~g~-~V--~~~~el~~al 535 (565)
T PRK06154 493 --------------------KV------------MPVSTT-KYRATD-ISGDYAAIARALGGYGE-RV--EDPEMLVPAL 535 (565)
T ss_pred --------------------hh------------hhhhcC-cccccC-CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHH
Confidence 00 000000 000001 13466778999999876 34 5899999999
Q ss_pred HHhHcC-CCCCcEEEEEEecCCC
Q 004227 411 QRVKEM-PAPGPVLIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~-~~~~P~lI~v~T~KG~ 432 (767)
+++.+. ..++|++|++.+.+..
T Consensus 536 ~~a~~~~~~~~p~lIev~v~~~~ 558 (565)
T PRK06154 536 LRALRKVKEGTPALLEVITSEET 558 (565)
T ss_pred HHHHhhccCCCeEEEEEEeChHH
Confidence 998742 1478999999986544
No 124
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.01 E-value=1.8e-09 Score=127.25 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=95.0
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 428 ~~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~y-------------- 487 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQW-------------- 487 (579)
T ss_pred ccccccchHHHHHhhhhhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcch--------------
Confidence 5588999999999999985 688999999999999 66788999999999999999988742
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh-hccC-CChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-GLIS-ASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r-~~~~-~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.+|...... .+. .+.. ++-. .+...++++||.++.. | ++.++|..
T Consensus 488 ----------------g~i~~~~~~~---~~~----------~~~~~~~~~~~d~~~lA~a~G~~g~~-v--~~~~el~~ 535 (579)
T TIGR03457 488 ----------------GAEKKNQVDF---YNN----------RFVGTELESELSFAGIADAMGAKGVV-V--DKPEDVGP 535 (579)
T ss_pred ----------------HHHHHHHHHh---hCC----------cceeccCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHH
Confidence 1111110000 000 0000 1112 3667889999998763 3 68999999
Q ss_pred HHHHhHcC-CCCCcEEEEEEecCCCC
Q 004227 409 IFQRVKEM-PAPGPVLIHVVTEKGKG 433 (767)
Q Consensus 409 al~~a~~~-~~~~P~lI~v~T~KG~G 433 (767)
+++++.+. ..++|++|++.+.+..+
T Consensus 536 al~~a~~~~~~~~p~lieV~v~~~~~ 561 (579)
T TIGR03457 536 ALKKAIAAQAEGKTTVIEIVCTRELG 561 (579)
T ss_pred HHHHHHhhCCCCCcEEEEEEeCCCcC
Confidence 99988642 24789999999987664
No 125
>PRK07586 hypothetical protein; Validated
Probab=99.01 E-value=1.7e-09 Score=125.53 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=89.9
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchh
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ 332 (767)
|++|.++|+|+|+++|+ ++++|||++|||+++ |...+|.+|.++++|+++||.||+.
T Consensus 385 g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~----------------- 441 (514)
T PRK07586 385 GAIGQGLPLATGAAVAC----PDRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRA----------------- 441 (514)
T ss_pred cccccHHHHHHHHHHhC----CCCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCch-----------------
Confidence 88999999999999996 689999999999998 7789999999999999988888874
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHhh-hcCCchHHHHHHHHHHHhhcc--CCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 333 LSSALSKLQASTNFRKLREAAKSITK-QIGGQTHEVAAKVDEYARGLI--SASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 333 ls~~L~~l~~~~~~~~ir~~~k~~~~-~~g~~~~~~~~k~~~~~r~~~--~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
|+.+|...+.... ..+... ..+ -+.. ..++..++++||+++. .| ++.++|.++
T Consensus 442 -------------y~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~d~~~lA~a~G~~~~-~V--~~~~el~~a 497 (514)
T PRK07586 442 -------------YAILRGELARVGAGNPGPRA-------LDM-LDLDDPDLDWVALAEGMGVPAR-RV--TTAEEFADA 497 (514)
T ss_pred -------------hHHHHHHHHHhcCCCCCccc-------ccc-ccCCCCCCCHHHHHHHCCCcEE-Ee--CCHHHHHHH
Confidence 1222211100000 000000 000 0111 2466788999999876 34 579999999
Q ss_pred HHHhHcCCCCCcEEEEEE
Q 004227 410 FQRVKEMPAPGPVLIHVV 427 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~ 427 (767)
++++.+ .++|++|++.
T Consensus 498 l~~a~~--~~~p~liev~ 513 (514)
T PRK07586 498 LAAALA--EPGPHLIEAV 513 (514)
T ss_pred HHHHHc--CCCCEEEEEE
Confidence 999986 5799999986
No 126
>PRK12474 hypothetical protein; Provisional
Probab=99.01 E-value=1.5e-09 Score=126.26 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=90.6
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchh
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ 332 (767)
|++|.++|+|+|+++|+ ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 389 gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y---------------- 446 (518)
T PRK12474 389 GSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSY---------------- 446 (518)
T ss_pred CccCccHHHHHHHHHHC----CCCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcc----------------
Confidence 89999999999999996 689999999999999 77899999999999999999999742
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhcc--CCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI--SASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 333 ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~--~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+.+|...+.. +.... .+.....-+.. ..++..++++||++.. .| .+.++|.+++
T Consensus 447 --------------~~i~~~~~~~----~~~~~---~~~~~~~~~~~~~~~d~~~lA~a~G~~~~-rv--~~~~eL~~al 502 (518)
T PRK12474 447 --------------AILNGELQRV----GAQGA---GRNALSMLDLHNPELNWMKIAEGLGVEAS-RA--TTAEEFSAQY 502 (518)
T ss_pred --------------hHHHHHHHhh----cCCCC---CccccccccCCCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHH
Confidence 1111110000 00000 00000000111 1356788999999876 34 5799999999
Q ss_pred HHhHcCCCCCcEEEEEEe
Q 004227 411 QRVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T 428 (767)
+++.+ .++|.+|++.+
T Consensus 503 ~~a~~--~~~p~liev~~ 518 (518)
T PRK12474 503 AAAMA--QRGPRLIEAMI 518 (518)
T ss_pred HHHHc--CCCCEEEEEEC
Confidence 99986 57999999864
No 127
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.01 E-value=1.9e-09 Score=126.84 Aligned_cols=128 Identities=18% Similarity=0.302 Sum_probs=93.3
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+|+|. ++++|||++|||+++ +...+|.+|.++++|+++||.||+.
T Consensus 422 ~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~--------------- 480 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEA--------------- 480 (571)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECch---------------
Confidence 4588999999999999985 688999999999999 5666799999999999999988874
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH-hhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~-r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
|+.+|...... .+. .+. .++ -..+...++++||.++.. + ++.++|.+
T Consensus 481 ---------------~~~i~~~~~~~---~~~----------~~~~~~~~~~~d~~~~A~a~G~~~~~-v--~~~~el~~ 529 (571)
T PRK07710 481 ---------------LGMVRQWQEEF---YNQ----------RYSHSLLSCQPDFVKLAEAYGIKGVR-I--DDELEAKE 529 (571)
T ss_pred ---------------HHHHHHHHHHH---hCC----------cceeccCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHH
Confidence 22222110000 000 000 011 124566789999999863 3 67899999
Q ss_pred HHHHhHcCCCCCcEEEEEEecCCC
Q 004227 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++++.+ .++|++|++.+....
T Consensus 530 al~~a~~--~~~p~lieV~vd~~~ 551 (571)
T PRK07710 530 QLQHAIE--LQEPVVIDCRVLQSE 551 (571)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999986 579999999997543
No 128
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.00 E-value=1.7e-09 Score=126.01 Aligned_cols=124 Identities=25% Similarity=0.315 Sum_probs=88.6
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcch
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg 331 (767)
.|++|+++|.|+|+++|. ++++|+|++|||+++.+ .+++++|.++++|+++||.||+...
T Consensus 406 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~-------------- 465 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYG-------------- 465 (530)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHH--------------
Confidence 478999999999999985 58899999999999955 5899999999999999998887311
Q ss_pred hhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHH
Q 004227 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (767)
Q Consensus 332 ~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~ 411 (767)
.++...+ ..+.. + ...-++-..+...++++||+.+. .+ ++.+++.++++
T Consensus 466 ----------------~~~~~~~----~~~~~------~--~~~~~~~~~d~~~~a~~~G~~~~-~v--~~~~~l~~al~ 514 (530)
T PRK07092 466 ----------------ALRWFAP----VFGVR------D--VPGLDLPGLDFVALARGYGCEAV-RV--SDAAELADALA 514 (530)
T ss_pred ----------------HHHHHHH----hhCCC------C--CCCCCCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHH
Confidence 1110000 00000 0 00000112345677999999876 44 47899999999
Q ss_pred HhHcCCCCCcEEEEEEe
Q 004227 412 RVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 412 ~a~~~~~~~P~lI~v~T 428 (767)
++.+ .++|++|++.|
T Consensus 515 ~a~~--~~~p~liev~~ 529 (530)
T PRK07092 515 RALA--ADGPVLVEVEV 529 (530)
T ss_pred HHHh--CCCCEEEEEEc
Confidence 9876 57999999986
No 129
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.00 E-value=1.6e-09 Score=128.42 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=94.0
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|++|.++|+|+|+++|. ++++|+|++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 444 ~~~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~------------- 504 (612)
T PRK07789 444 GGLGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNL------------- 504 (612)
T ss_pred CCcccccchhhhHHhhhccC----CCCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCch-------------
Confidence 35689999999999999985 688999999999998 77889999999999999999999742
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhh-ccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARG-LISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~-~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.+|...... .+...... ..... .-.++..+++++||+++.. | ++.++|.+
T Consensus 505 -----------------g~i~~~q~~~---~~~~~~~~-----~~~~~~~~~~d~~~lA~a~G~~~~~-V--~~~~eL~~ 556 (612)
T PRK07789 505 -----------------GMVRQWQTLF---YEERYSNT-----DLHTHSHRIPDFVKLAEAYGCVGLR-C--EREEDVDA 556 (612)
T ss_pred -----------------HHHHHHHHHh---hCCCccee-----ecCcCCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHH
Confidence 1111110000 00000000 00000 0014667889999998763 3 68999999
Q ss_pred HHHHhHcCCCCCcEEEEEEecC
Q 004227 409 IFQRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v~T~K 430 (767)
+|+++.+. .++|.+|+|.+.+
T Consensus 557 al~~a~~~-~~~p~lIev~i~~ 577 (612)
T PRK07789 557 VIEKARAI-NDRPVVIDFVVGK 577 (612)
T ss_pred HHHHHHhc-CCCcEEEEEEECC
Confidence 99998763 2689999999975
No 130
>PRK08617 acetolactate synthase; Reviewed
Probab=99.00 E-value=1.4e-09 Score=127.42 Aligned_cols=127 Identities=17% Similarity=0.255 Sum_probs=93.2
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|.++|+|+|+++|. ++++|+|++|||+++ |...+|.+|.++++|+++||.||+...
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~~------------- 472 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHYN------------- 472 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCccc-------------
Confidence 4578999999999999985 688999999999999 777889999999999998888887321
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHH-HhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEY-ARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~-~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
.+|.. +.. ....+ ..++-..+...++++||.++.. -++.++|.++
T Consensus 473 -----------------~~~~~------------~~~--~~~~~~~~~~~~~d~~~lA~a~G~~~~~---v~~~~eL~~a 518 (552)
T PRK08617 473 -----------------MVEFQ------------EEM--KYGRSSGVDFGPVDFVKYAESFGAKGLR---VTSPDELEPV 518 (552)
T ss_pred -----------------hHHHH------------HHh--hcCCcccCCCCCCCHHHHHHHCCCeEEE---ECCHHHHHHH
Confidence 11100 000 00000 0011124567789999998763 2789999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
++++.+ .++|++|++.+.+..
T Consensus 519 l~~a~~--~~~p~liev~~~~~~ 539 (552)
T PRK08617 519 LREALA--TDGPVVIDIPVDYSD 539 (552)
T ss_pred HHHHHh--CCCcEEEEEEecccc
Confidence 999875 578999999997554
No 131
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=98.99 E-value=2e-09 Score=126.69 Aligned_cols=129 Identities=15% Similarity=0.208 Sum_probs=92.8
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|+++++|+|+++|. ++++||+++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 406 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~y-------------- 465 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTY-------------- 465 (575)
T ss_pred CcchhhchHHHHHHHHHhC----CCCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 4589999999999999885 688999999999999 67788999999999999998888741
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+.++...+.. +.. ....++-..+...++++||.++. .+ ++.++|.+++
T Consensus 466 ----------------g~i~~~~~~~----~~~---------~~~~~~~~~df~~iA~a~G~~~~-~v--~~~~el~~al 513 (575)
T TIGR02720 466 ----------------GFIKDEQEDT----NQP---------LIGVDFNDADFAKIAEGVGAVGF-RV--NKIEQLPAVF 513 (575)
T ss_pred ----------------HHHHHHHHHh----CCC---------cccccCCCCCHHHHHHHCCCEEE-Ee--CCHHHHHHHH
Confidence 1111110000 000 00011113566788999999876 34 6789999999
Q ss_pred HHhHcCCCCCcEEEEEEecCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG 431 (767)
+++.+...++|++|++.+.+.
T Consensus 514 ~~a~~~~~~~p~liev~i~~~ 534 (575)
T TIGR02720 514 EQAKAIKQGKPVLIDAKITGD 534 (575)
T ss_pred HHHHhhCCCCcEEEEEEeCCC
Confidence 998721157999999999764
No 132
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=98.99 E-value=1.9e-09 Score=127.49 Aligned_cols=131 Identities=23% Similarity=0.333 Sum_probs=92.9
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcch-HHHHHHHHHc-----CCCEEEEEECCCCCccccccCC
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQA-YEAMNNAGFL-----DANLIVVLNDNKQVSLPTATLD 324 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~-~EAln~A~~~-----~~nli~Iv~dN~~~S~pt~~~d 324 (767)
+.|++|.++|+|+|+++|+ ++++|||++|||+++ |. ..+|.+|.++ ++|+++||.||+..
T Consensus 413 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~-------- 478 (597)
T PRK08273 413 TLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRDL-------- 478 (597)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCcc--------
Confidence 4589999999999999986 689999999999997 66 4779999988 89999999999742
Q ss_pred CCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHH
Q 004227 325 GPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVE 404 (767)
Q Consensus 325 g~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~ 404 (767)
+.+|...... .+..... ...++-..+...++++||+.+.. | .+.+
T Consensus 479 ----------------------~~i~~~q~~~---~~~~~~~-------~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~ 523 (597)
T PRK08273 479 ----------------------NQVTWEQRVM---EGDPKFE-------ASQDLPDVPYARFAELLGLKGIR-V--DDPE 523 (597)
T ss_pred ----------------------hHHHHHHHHh---cCCCccc-------ccccCCCCCHHHHHHHCCCEEEE-E--CCHH
Confidence 1111110000 0000000 00011123466789999998763 3 5899
Q ss_pred HHHHHHHHhHcCCCCCcEEEEEEecCCC
Q 004227 405 DLVTIFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 405 ~l~~al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+|.++++++.+ .++|++|+|.+.+..
T Consensus 524 eL~~al~~a~~--~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 524 QLGAAWDEALA--ADRPVVLEVKTDPNV 549 (597)
T ss_pred HHHHHHHHHHh--CCCCEEEEEEeCCCC
Confidence 99999999986 589999999997544
No 133
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=98.99 E-value=1.7e-09 Score=127.07 Aligned_cols=127 Identities=20% Similarity=0.293 Sum_probs=91.1
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+...
T Consensus 416 ~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~------------- 476 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSLG------------- 476 (566)
T ss_pred ccccccchhhHhheeheec----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCch-------------
Confidence 5689999999999999985 688999999999998 777889999999999999998887421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
.+|...... .+.. .....+ -.++...++|+||.++.. + ++.++|.++
T Consensus 477 -----------------~i~~~q~~~---~~~~---------~~~~~~~~~~d~~~lA~a~G~~~~~-v--~~~~el~~a 524 (566)
T PRK07282 477 -----------------MVRQWQESF---YEGR---------TSESVFDTLPDFQLMAQAYGIKHYK-F--DNPETLAQD 524 (566)
T ss_pred -----------------HHHHHHHHH---hCCC---------cccccCCCCCCHHHHHHHCCCEEEE-E--CCHHHHHHH
Confidence 111110000 0000 000011 124667789999998763 3 578999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG 431 (767)
++.+ . .++|++|+|.+.+.
T Consensus 525 l~~~-~--~~~p~lIeV~v~~~ 543 (566)
T PRK07282 525 LEVI-T--EDVPMLIEVDISRK 543 (566)
T ss_pred HHHh-c--CCCCEEEEEEeCCc
Confidence 9754 3 47999999998753
No 134
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.98 E-value=7.4e-09 Score=121.35 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=91.6
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.. +....
T Consensus 415 ~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~------~~~~~- 480 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYR------GDDVN- 480 (554)
T ss_pred CCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhh------hhhhh-
Confidence 4588999999999999972 78899999999999 7778899999999999999999974200 00000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
. .+.. ....++ -..++..+.++||.+... | ++.++|.++
T Consensus 481 -------------------------~---~~~~---------~~~~~~~~~~df~~la~a~G~~~~~-v--~~~~el~~a 520 (554)
T TIGR03254 481 -------------------------V---VGAD---------PAPTVLVHGARYDKMMKAFGGVGYN-V--TTPDELKAA 520 (554)
T ss_pred -------------------------h---cCCC---------CCccccCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHH
Confidence 0 0000 000011 124566789999998663 3 689999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
++++.+ .++|++|+|.+.+..
T Consensus 521 l~~a~~--~~~p~lIev~id~~~ 541 (554)
T TIGR03254 521 LNEALA--SGKPTLINAVIDPSA 541 (554)
T ss_pred HHHHHh--CCCCEEEEEEECCCc
Confidence 999876 579999999987543
No 135
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=98.98 E-value=1.9e-09 Score=126.61 Aligned_cols=128 Identities=23% Similarity=0.358 Sum_probs=91.0
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|+|++|||+++ +...++.+|.++++|+++||.||+....
T Consensus 417 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpvi~vV~NN~~~g~------------ 478 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLM--MNIQEMATAAENQLDVKIILMNNEALGL------------ 478 (564)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcccc------------
Confidence 5688999999999999986 588999999999999 4556699999999999999999974210
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
++..-+.. .+... ...++ -..+...++++||.+++. + .+.++|.++
T Consensus 479 ------------------~~~~q~~~---~~~~~---------~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~a 525 (564)
T PRK08155 479 ------------------VHQQQSLF---YGQRV---------FAATYPGKINFMQIAAGFGLETCD-L--NNEADPQAA 525 (564)
T ss_pred ------------------cHHHHHHh---cCCCe---------eeccCCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHH
Confidence 11000000 00000 00001 123556779999998763 3 579999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG 431 (767)
++++.+ .++|++|+|.+...
T Consensus 526 l~~a~~--~~~p~lIeV~~~~~ 545 (564)
T PRK08155 526 LQEAIN--RPGPALIHVRIDAE 545 (564)
T ss_pred HHHHHh--CCCCEEEEEEeCCC
Confidence 999876 57899999998643
No 136
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.98 E-value=2.1e-09 Score=126.86 Aligned_cols=138 Identities=22% Similarity=0.258 Sum_probs=93.3
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+..
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~-------------- 476 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYL-------------- 476 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 4589999999999999985 588999999999998 67788999999999999999999741
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhc--CCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQI--GGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~--g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.+|..-....... +.....+. ..-.+.-..++..++++||.++.. | ++.++|.+
T Consensus 477 ----------------g~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~df~~lA~a~G~~~~~-v--~~~~eL~~ 533 (591)
T PRK11269 477 ----------------GLIRQAQRAFDMDYCVQLAFENIN----SPELNGYGVDHVKVAEGLGCKAIR-V--FKPEDIAP 533 (591)
T ss_pred ----------------hHHHHHHHHhccCccceeeccccc----cccccCCCCCHHHHHHHCCCeEEE-E--CCHHHHHH
Confidence 11111100000000 00000000 000000124667889999998763 3 78999999
Q ss_pred HHHHhHcC--CCCCcEEEEEEecCC
Q 004227 409 IFQRVKEM--PAPGPVLIHVVTEKG 431 (767)
Q Consensus 409 al~~a~~~--~~~~P~lI~v~T~KG 431 (767)
+++++.+. ..++|++|+|.+.+.
T Consensus 534 al~~a~~~~~~~~gp~lieV~v~~~ 558 (591)
T PRK11269 534 ALEQAKALMAEFRVPVVVEVILERV 558 (591)
T ss_pred HHHHHHhhcccCCCcEEEEEEeccc
Confidence 99998631 147899999998643
No 137
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=98.96 E-value=2.8e-09 Score=124.93 Aligned_cols=128 Identities=21% Similarity=0.342 Sum_probs=92.2
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|+|++|||+++. ...+|.+|.++++|+++||.||+...
T Consensus 410 ~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~--~~~eL~ta~~~~l~~~~vv~NN~~~~------------- 470 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQM--NLQELSTAVQYDIPVKILILNNRYLG------------- 470 (558)
T ss_pred ccccccchhhHHHhhhhhC----CCCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 5588999999999999885 5789999999999994 55679999999999999999998421
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH-hhcc-CCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~-r~~~-~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
.++..-+.. .+. .+. .... ..+...++++||+++. .+ ++.++|.+
T Consensus 471 -----------------~~~~~q~~~---~~~----------~~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~~l~~ 517 (558)
T TIGR00118 471 -----------------MVRQWQELF---YEE----------RYSHTHMGSLPDFVKLAEAYGIKGI-RI--EKPEELDE 517 (558)
T ss_pred -----------------HHHHHHHHh---cCC----------ceeeccCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHH
Confidence 111100000 000 000 0011 2456678999999876 34 56899999
Q ss_pred HHHHhHcCCCCCcEEEEEEecCCC
Q 004227 409 IFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++++.+ .++|++|++.+.+..
T Consensus 518 al~~a~~--~~~p~liev~~~~~~ 539 (558)
T TIGR00118 518 KLKEALS--SNEPVLLDVVVDKPE 539 (558)
T ss_pred HHHHHHh--CCCCEEEEEEeCCcc
Confidence 9999876 479999999997543
No 138
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=98.94 E-value=4.1e-09 Score=124.33 Aligned_cols=127 Identities=17% Similarity=0.304 Sum_probs=91.7
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ +...++.+|.++++|+++||-||+...
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g------------- 477 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTLG------------- 477 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 4588999999999999985 578999999999999 666789999999999999999997411
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
.++..-+.. .+.... .-++ -..+...++++||.++.. + ++.++|.++
T Consensus 478 -----------------~~~~~~~~~---~~~~~~---------~~~~~~~~d~~~la~a~G~~~~~-v--~~~~el~~a 525 (586)
T PRK06276 478 -----------------MVYQWQNLY---YGKRQS---------EVHLGETPDFVKLAESYGVKADR-V--EKPDEIKEA 525 (586)
T ss_pred -----------------HHHHHHHHH---hCCCcc---------cccCCCCCCHHHHHHHCCCeEEE-E--CCHHHHHHH
Confidence 111000000 000000 0001 123566789999998763 3 689999999
Q ss_pred HHHhHcCCCCCcEEEEEEecC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~K 430 (767)
++++.+ .++|.+|+|.+..
T Consensus 526 l~~a~~--~~~p~lIeV~i~~ 544 (586)
T PRK06276 526 LKEAIK--SGEPYLLDIIIDP 544 (586)
T ss_pred HHHHHh--CCCCEEEEEEecc
Confidence 999876 5799999999864
No 139
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.93 E-value=2.8e-09 Score=125.34 Aligned_cols=136 Identities=21% Similarity=0.252 Sum_probs=90.2
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++.+..-+++++|.++++|+++||.||+....
T Consensus 428 ~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~------------ 491 (569)
T PRK08327 428 SAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLA------------ 491 (569)
T ss_pred CCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCccccc------------
Confidence 5689999999999998874 789999999999999875555799999999999999999974211
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHH-Hhhc-cCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEY-ARGL-ISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~-~r~~-~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+|...+.+.. .+... ..+.. ..++ -..+...++++||+.+. .+ ++.++|.+
T Consensus 492 ------------------~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~d~~~la~a~G~~~~-~v--~~~~el~~ 544 (569)
T PRK08327 492 ------------------VKEAVLEVYP-EGYAA-----RKGTFPGTDFDPRPDFAKIAEAFGGYGE-RV--EDPEELKG 544 (569)
T ss_pred ------------------chhHHhhhCc-ccccc-----cccccccccCCCCCCHHHHHHhCCCCce-Ee--CCHHHHHH
Confidence 0000000000 00000 00000 0001 12355678999999866 34 48999999
Q ss_pred HHHHhHcC--CCCCcEEEEEEec
Q 004227 409 IFQRVKEM--PAPGPVLIHVVTE 429 (767)
Q Consensus 409 al~~a~~~--~~~~P~lI~v~T~ 429 (767)
+++++.+. +.++|++|++.+.
T Consensus 545 al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 545 ALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHHHhcCCCcEEEEEEcc
Confidence 99887642 1367999999864
No 140
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.92 E-value=7.6e-09 Score=122.13 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=92.7
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|||++|||+++ +...++.+|.++++|+++||.||+..
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~--~~~~el~Ta~~~~lpv~ivV~NN~~y-------------- 492 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWG--ISMNEVMTAVRHNWPVTAVVFRNYQW-------------- 492 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHh--ccHHHHHHHHHhCCCeEEEEEeCchh--------------
Confidence 5688999999999999985 588999999999999 45677999999999999999888731
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH-hhcc-CCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA-RGLI-SASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~-r~~~-~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.+|...... .+. .+. .++- ..+...+.++||.++. .+ ++.++|.+
T Consensus 493 ----------------~~~~~~~~~~---~~~----------~~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~ 540 (588)
T PRK07525 493 ----------------GAEKKNQVDF---YNN----------RFVGTELDNNVSYAGIAEAMGAEGV-VV--DTQEELGP 540 (588)
T ss_pred ----------------HHHHHHHHHH---hCC----------CcccccCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHH
Confidence 1111110000 000 000 0111 1356778999999876 34 58899999
Q ss_pred HHHHhHcCC-CCCcEEEEEEecCCCC
Q 004227 409 IFQRVKEMP-APGPVLIHVVTEKGKG 433 (767)
Q Consensus 409 al~~a~~~~-~~~P~lI~v~T~KG~G 433 (767)
+++++.+.. .++|++|+|.+.+..|
T Consensus 541 al~~a~~~~~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 541 ALKRAIDAQNEGKTTVIEIMCNQELG 566 (588)
T ss_pred HHHHHHhcCCCCCcEEEEEEeccccC
Confidence 999876532 3689999999976554
No 141
>PLN02573 pyruvate decarboxylase
Probab=98.90 E-value=5.1e-09 Score=123.34 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=90.0
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|.++++|+++||.||+....-...++.
T Consensus 426 ~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~----- 494 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDG----- 494 (578)
T ss_pred chhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEEEeeccc-----
Confidence 5689999999999999996 588999999999998 88889999999999999999888742210000000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcC-----CeEeeccCCCCHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELG-----LYYIGPVDGHNVED 405 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G-----~~~i~~vDGhdi~~ 405 (767)
.| .+.-..+...++++|| +++. .| .+.++
T Consensus 495 --------------~~-----------------------------~~~~~~d~~~lA~a~G~~~g~~~~~-~V--~~~~e 528 (578)
T PLN02573 495 --------------PY-----------------------------NVIKNWNYTGLVDAIHNGEGKCWTA-KV--RTEEE 528 (578)
T ss_pred --------------Cc-----------------------------cccCCCCHHHHHHHhcCcCCceeEE-Ee--cCHHH
Confidence 00 0001134456788885 6655 33 47999
Q ss_pred HHHHHHHhHcCCCCCcEEEEEEecC
Q 004227 406 LVTIFQRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 406 l~~al~~a~~~~~~~P~lI~v~T~K 430 (767)
|.++++++.+...++|++|+|.+.+
T Consensus 529 L~~al~~a~~~~~~~p~lieV~v~~ 553 (578)
T PLN02573 529 LIEAIATATGEKKDCLCFIEVIVHK 553 (578)
T ss_pred HHHHHHHHHhhCCCCcEEEEEEcCc
Confidence 9999999874224789999999863
No 142
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=98.90 E-value=4.7e-09 Score=122.60 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=90.0
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|.++|+|+|+++|. ++++|+|++|||+++ |...+|.+|.++++|+++||.||+....-...+... .
T Consensus 402 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~-~-- 472 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAE-Q-- 472 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCC-C--
Confidence 4588999999999999985 689999999999998 888999999999999999998887422100000000 0
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCe----EeeccCCCCHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY----YIGPVDGHNVEDL 406 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~----~i~~vDGhdi~~l 406 (767)
.| .++-..++..+.++||.. +. .| ++.++|
T Consensus 473 --------------~~-----------------------------~~~~~~df~~la~a~G~~~~~~~~-~v--~~~~el 506 (539)
T TIGR03393 473 --------------RY-----------------------------NDIALWNWTHLPQALSLDPQSECW-RV--SEAEQL 506 (539)
T ss_pred --------------Cc-----------------------------CcCCCCCHHHHHHHcCCCCccceE-Ee--ccHHHH
Confidence 00 001123455678999974 33 23 689999
Q ss_pred HHHHHHhHcCCCCCcEEEEEEecC
Q 004227 407 VTIFQRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 407 ~~al~~a~~~~~~~P~lI~v~T~K 430 (767)
.++++++.+ .++|++|++.+.+
T Consensus 507 ~~al~~a~~--~~~p~liev~i~~ 528 (539)
T TIGR03393 507 ADVLEKVAA--HERLSLIEVVLPK 528 (539)
T ss_pred HHHHHHHhc--cCCeEEEEEEcCc
Confidence 999999986 5799999999853
No 143
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.86 E-value=1.3e-07 Score=117.27 Aligned_cols=256 Identities=19% Similarity=0.170 Sum_probs=165.0
Q ss_pred hHHHHHHHHHHHHHHhCCC--E---EEEeccccCCc--Ch-hhhhhhC-----CCcEEeccccHHHHHHHHHHHH-----
Q 004227 466 TYTQYFAESLIKEAETDDK--I---VAIHAAMGGGT--GL-NYFQKRF-----PDRCFDVGIAEQHAVTFAAGLA----- 527 (767)
Q Consensus 466 s~~~af~~aL~~~~~~d~~--i---vvi~aD~~gs~--gl-~~f~~~~-----P~R~~d~GIaE~~~vg~AaGlA----- 527 (767)
+=.+|+.+.+.+..+.|.. + -+++ ...|+. ++ ..|.+.- -+-+|+.|++|.-+++++.|.+
T Consensus 21 ~GneAivr~~l~q~~~d~~aG~~ta~~vs-gYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~~ 99 (1159)
T PRK13030 21 TGTQALVRLLLMQRRRDRARGLNTAGFVS-GYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVEAD 99 (1159)
T ss_pred eHHHHHHHHHHHhhhHHHhcCCCccceEE-EeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcccccc
Confidence 4457777777776555532 2 2222 233332 22 2333221 1378999999999999999999
Q ss_pred ----hcCCeeEEeechhHHHhHHHHHHHhhhcCCC--C---EEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecC
Q 004227 528 ----SEGVKPFCAIYSSFLQRGYDQVVHDVDLQKL--P---VRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPS 598 (767)
Q Consensus 528 ----~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~l--p---Viiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Ps 598 (767)
..|.+.+++.-.+.+.++.|.+++. ++... . |++++|..|.. +.|...|..++...-+|.|+.|+
T Consensus 100 ~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~-n~~G~~~~GG~v~v~gDDpg~~-----SSq~eqdSr~~~~~a~iPvl~Ps 173 (1159)
T PRK13030 100 PERTVDGVFAMWYGKGPGVDRAGDALKHG-NAYGSSPHGGVLVVAGDDHGCV-----SSSMPHQSDFALIAWHMPVLNPA 173 (1159)
T ss_pred CCccccceEEEEecCcCCcccchhHHHHH-HhhcCCCCCcEEEEEecCCCCc-----cCcCHHHHHHHHHHcCCceeCCC
Confidence 6667778888899999999998754 44443 2 55666666642 22233333344444566699999
Q ss_pred CHHHHHHHHHHHHhh---CCCCEEEEecCCCCc--------c----cccCCCCCC------CCccc--------------
Q 004227 599 DEAELMHMVATAAVI---DDRPSCFRFPRGNGI--------G----AVLPPNNKG------TPLEI-------------- 643 (767)
Q Consensus 599 d~~E~~~~l~~A~~~---~~~P~~irl~r~~~~--------~----~~~p~~~~~------~~~~i-------------- 643 (767)
|++|+.++.+++++. .+-|+.+|....... . ...|...+. ..+..
T Consensus 174 ~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl 253 (1159)
T PRK13030 174 NVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAKL 253 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHHH
Confidence 999999999999973 456999877421100 0 001110000 00000
Q ss_pred ------Cce----eEe--ecCCcEEEEEechhHHHHHHHHHHHhcCC-----CcEEEEEcccCCCCcHHHHHHHhccCCE
Q 004227 644 ------GKG----RIL--MEGDRVAILGYGSIVQQCVLAANMLKSQD-----ISVTVADARFCKPLDTDLIRQLANEHEI 706 (767)
Q Consensus 644 ------gk~----~vl--~eG~dvtIva~Gs~v~~al~Aa~~L~~~G-----I~v~VIdl~slkPlD~e~i~~~~~~~~~ 706 (767)
.+. ++. .++.++-||++|.....+++|.+.|...+ +.++|+.+...+|||.+.+++.++.++.
T Consensus 254 ~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~ 333 (1159)
T PRK13030 254 PAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFADGLEE 333 (1159)
T ss_pred HHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHHhcCCE
Confidence 000 111 11357999999999999999999885433 2467888889999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHhc
Q 004227 707 LITVEEGSVGGFGSHVCHFLTLS 729 (767)
Q Consensus 707 vVvvEe~~~GGlgs~I~~~l~~~ 729 (767)
|+||||... =+...|.+.+.+.
T Consensus 334 VlVVEE~~p-~iE~Qlk~~l~~~ 355 (1159)
T PRK13030 334 ILVIEEKRP-VIEQQIKDYLYNR 355 (1159)
T ss_pred EEEEeCCch-HHHHHHHHHHHhc
Confidence 999999863 3455566666544
No 144
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.85 E-value=1e-08 Score=107.54 Aligned_cols=140 Identities=23% Similarity=0.334 Sum_probs=89.6
Q ss_pred CCcccchhHHHHHHHHHHHHH-cCCCCeEEEEEcCCccc-CcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCC
Q 004227 251 GAGHSSTSISAGLGMAVARDI-LGKNNNVISVIGDGAMT-AGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPAT 328 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl-~g~~~~Vv~viGDGal~-eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~ 328 (767)
+.|.+|.++++|+|.++|..- ..++++|||+.|||++. .| ...+.++.++++|+++||.||+.... +..++....
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~~yg~-~~~q~~~~~ 138 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNEVYSN-TGGQRSGAT 138 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCccccC-CCCCCCCCC
Confidence 458999999999999887211 13688999999999874 33 34577777889999999999984221 111110000
Q ss_pred cchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 329 ~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
.-+.. + .........-.++..++++++|+.++..+.-.+.+++.+
T Consensus 139 ~~g~~-----------------------~------------~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~ 183 (237)
T cd02018 139 PLGAD-----------------------S------------KMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLK 183 (237)
T ss_pred cCCCc-----------------------c------------cccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHH
Confidence 00000 0 000000011124556779999999875444467999999
Q ss_pred HHHHhHcCCCCCcEEEEEEec
Q 004227 409 IFQRVKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 409 al~~a~~~~~~~P~lI~v~T~ 429 (767)
+++++.+ ..++|.+|++.+.
T Consensus 184 al~~al~-~~~GP~lI~v~i~ 203 (237)
T cd02018 184 VVKEAIS-RTDGPTFIHAYTP 203 (237)
T ss_pred HHHHHHh-cCCCCEEEEEeCC
Confidence 9999874 1478999999864
No 145
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.85 E-value=8.2e-09 Score=110.38 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=90.3
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchh
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ 332 (767)
|.+|.++|+|+|+++|. ++++|||+.|||++. ..-...+.+|++++.|+++||.||+.... |..|..+..+.+.
T Consensus 60 ~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~-~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~-t~~Q~s~~t~~g~ 133 (280)
T PRK11869 60 TLHGRAIPAATAVKATN----PELTVIAEGGDGDMY-AEGGNHLIHAIRRNPDITVLVHNNQVYGL-TKGQASPTTLKGF 133 (280)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEECchHHh-hCcHHHHHHHHHhCcCcEEEEEECHHHhh-hcceecCCCCCCc
Confidence 44677899999998874 689999999999976 11257899999999999999999973221 1111111111110
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHH
Q 004227 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (767)
Q Consensus 333 ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~ 412 (767)
... +...|. ..-..+...+++++|..++....-.+.+++.+++++
T Consensus 134 ~~~---------------------~~p~g~--------------~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~ 178 (280)
T PRK11869 134 KTP---------------------TQPWGV--------------FEEPFNPIALAIALDASFVARTFSGDIEETKEILKE 178 (280)
T ss_pred ccc---------------------cCCCCc--------------cCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHH
Confidence 000 000000 000134556799999998865555799999999999
Q ss_pred hHcCCCCCcEEEEEEec
Q 004227 413 VKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 413 a~~~~~~~P~lI~v~T~ 429 (767)
+.+ .++|.+|++.+.
T Consensus 179 Al~--~~Gp~lIeV~~p 193 (280)
T PRK11869 179 AIK--HKGLAIVDIFQP 193 (280)
T ss_pred HHh--CCCCEEEEEECC
Confidence 987 579999999864
No 146
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=98.83 E-value=1e-08 Score=110.86 Aligned_cols=134 Identities=21% Similarity=0.272 Sum_probs=88.7
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchh
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ 332 (767)
|.+|.++|+|+|+++|. ++++|||+.|||++. ++....+.+|++.+.|+++||.||+.... |..|..++.+.+.
T Consensus 70 g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~-t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGL-TKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHHC----CCCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhc-ccCcccCCcCCCc
Confidence 66788999999999985 689999999999972 23446799999999999999999974221 1111000000000
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHH
Q 004227 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (767)
Q Consensus 333 ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~ 412 (767)
.. -+...|. ..-..+...+++++|+.++....-.+.++|.+++++
T Consensus 144 ~~---------------------~~~~~g~--------------~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~ 188 (301)
T PRK05778 144 KT---------------------KTAPYGN--------------IEPPIDPCALALAAGATFVARSFAGDVKQLVELIKK 188 (301)
T ss_pred cc---------------------ccccCCC--------------cCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHH
Confidence 00 0000000 000134556789999987643345789999999999
Q ss_pred hHcCCCCCcEEEEEEec
Q 004227 413 VKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 413 a~~~~~~~P~lI~v~T~ 429 (767)
+.+ .++|.+|++.+.
T Consensus 189 A~~--~~GpalIeV~~~ 203 (301)
T PRK05778 189 AIS--HKGFAFIDVLSP 203 (301)
T ss_pred HHh--CCCCEEEEEcCC
Confidence 886 589999998763
No 147
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.82 E-value=1.7e-08 Score=108.06 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=91.2
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCC-cccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDG-al~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
.|.+|.++|+|+|+++|. ++.+||+++||| ++..| ...|.+|.+.+.|+++||.||+.... |..|..+..+.
T Consensus 58 ~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygm-tggQ~s~~t~~ 130 (279)
T PRK11866 58 HGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGL-TTGQASPTTPR 130 (279)
T ss_pred ccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhh-hcccccCCCCC
Confidence 356688999999999985 689999999999 68855 57899999999999999999973221 11111111111
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+.... +...|+... ..+...+++++|..++......+.+++.+++
T Consensus 131 g~~t~---------------------~t~~g~~~~--------------~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l 175 (279)
T PRK11866 131 GVKTK---------------------TTPDGNIEE--------------PFNPIALALAAGATFVARGFSGDVKHLKEII 175 (279)
T ss_pred Cceee---------------------ccCCCCCCC--------------CCCHHHHHHHCCCCEEEEEcCCCHHHHHHHH
Confidence 11000 000000000 0134456899999887665668999999999
Q ss_pred HHhHcCCCCCcEEEEEEec
Q 004227 411 QRVKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~ 429 (767)
+++.+ .++|.+|++.+.
T Consensus 176 ~~Al~--~~Gps~I~v~~p 192 (279)
T PRK11866 176 KEAIK--HKGFSFIDVLSP 192 (279)
T ss_pred HHHHh--CCCCEEEEEeCC
Confidence 99987 589999999763
No 148
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.82 E-value=3.8e-08 Score=106.03 Aligned_cols=151 Identities=24% Similarity=0.394 Sum_probs=105.3
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcc-cCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCC
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAM-TAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPAT 328 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~ 328 (767)
...+..|.+.+.|.|++.|.+.++++.+|||+.|||.+ ..| .+++..|.+.+.|+++||.||+. ...|.-|..++.
T Consensus 66 ~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~-Y~nTGgQ~S~~T 142 (299)
T PRK11865 66 WIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEA-YMNTGIQRSGST 142 (299)
T ss_pred cchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCcc-ccCCCCCCCCCC
Confidence 44566677899999999999887888899999999987 444 38999999999999999999984 233444444544
Q ss_pred cchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchH-HHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHH
Q 004227 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTH-EVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (767)
Q Consensus 329 ~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~-~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~ 407 (767)
+.|+..+. ...|.... +... ..+-..++.++|..|+..++-.|..++.
T Consensus 143 p~Ga~t~t---------------------sp~Gk~~~G~~~~----------kkd~~~Ia~a~g~~YVA~~~~~~~~~l~ 191 (299)
T PRK11865 143 PFGASTTT---------------------SPAGKYSRGEDRP----------KKNMPLIMAAHGIPYVATASIGYPEDFM 191 (299)
T ss_pred CCCccccc---------------------CCCCcccCCCCCC----------CCCHHHHHHHcCCCEEEEEeCCCHHHHH
Confidence 55443110 00010000 0000 0112345778898888777878999999
Q ss_pred HHHHHhHcCCCCCcEEEEEEec--CCCCCCh
Q 004227 408 TIFQRVKEMPAPGPVLIHVVTE--KGKGYPP 436 (767)
Q Consensus 408 ~al~~a~~~~~~~P~lI~v~T~--KG~G~~~ 436 (767)
+++++|.+ .+||.+|++++. .|+|+.+
T Consensus 192 ~~i~~A~~--~~Gps~I~v~sPC~~~~~~~~ 220 (299)
T PRK11865 192 EKVKKAKE--VEGPAYIQVLQPCPTGWGFPP 220 (299)
T ss_pred HHHHHHHh--CCCCEEEEEECCCCCCCCCCH
Confidence 99999987 579999999874 4666554
No 149
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=98.82 E-value=1.5e-08 Score=119.08 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=88.8
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
|.|.+|+++|+|+|+++| ++++|||++|||+++ +...++.+|.++++|+++||.||+...+-.. .......
T Consensus 423 g~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~-~~~~~~~- 493 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFL--HDLNGLLLLKQVPAPLTIVVVNNNGGGIFSL-LPQPEEE- 493 (568)
T ss_pred CccchhhHHHHHHHHHhc-----CCCCEEEEechHHhh--cCcHHHHhhcccCCCeEEEEEECCCCccccC-CCCCCCc-
Confidence 457788999999999987 378899999999999 4556799999999999999988874211000 0000000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
. .. +.+....-..+...++++||+.+. .| ++.++|.+++
T Consensus 494 ----------------------------------~-~~---~~~~~~~~~~df~~lA~a~G~~~~-~V--~~~~eL~~al 532 (568)
T PRK07449 494 ----------------------------------P-VF---ERFFGTPHGVDFAHAAAMYGLEYH-RP--ETWAELEEAL 532 (568)
T ss_pred ----------------------------------c-hh---hHhhcCCCCCCHHHHHHHcCCCcc-CC--CCHHHHHHHH
Confidence 0 00 000000112456778999999865 23 6899999999
Q ss_pred HHhHcCCCCCcEEEEEEecC
Q 004227 411 QRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~K 430 (767)
+++.+ .++|++|+|.+.+
T Consensus 533 ~~a~~--~~~p~lIev~id~ 550 (568)
T PRK07449 533 ADALP--TPGLTVIEVKTNR 550 (568)
T ss_pred HHHhc--CCCCEEEEEeCCh
Confidence 99876 5799999999853
No 150
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.78 E-value=2.8e-08 Score=116.09 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=88.9
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|+++|+|+|+++|. ++++|+++|||+++ |+..+|.+|.++++|+++||.||+....-...+.
T Consensus 401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~------ 467 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRVFQP------ 467 (535)
T ss_pred ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceeehhcc------
Confidence 4589999999999999984 45678899999998 8888999999999999999988874211000000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
. . .+ .++-..+..+++++||.+... + ++.++|.+++
T Consensus 468 -----------------------------~----~-------~~-~~~~~~d~~~lA~a~G~~~~~-v--~~~~eL~~al 503 (535)
T TIGR03394 468 -----------------------------E----S-------AF-NDLDDWRFADMAAGMGGDGVR-V--RTRAELAAAL 503 (535)
T ss_pred -----------------------------C----C-------Cc-ccCCCCCHHHHHHHcCCCceE-e--CCHHHHHHHH
Confidence 0 0 00 011124556779999988653 3 6899999999
Q ss_pred HHhHcCCCCCcEEEEEEecCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG 431 (767)
+++.+. .++|++|++.+.+.
T Consensus 504 ~~a~~~-~~~p~lIev~i~~~ 523 (535)
T TIGR03394 504 DKAFAT-RGRFQLIEAMLPRG 523 (535)
T ss_pred HHHHhc-CCCeEEEEEECCcc
Confidence 998752 35589999998644
No 151
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.78 E-value=2.5e-08 Score=106.71 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=86.0
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchh
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ 332 (767)
+.+|.++|+|+|+++|. ++++|||+.|||+++. +.-..+.+|++.++|+++||.||+.... |..|..+..+.+.
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGm-t~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGL-TNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhc-ceecccCCCCCCc
Confidence 35678899999999985 7899999999999852 2234566789999999999999974221 1111111000000
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHH
Q 004227 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (767)
Q Consensus 333 ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~ 412 (767)
. ..+...+. ..-..+...+++++|+.++....-.+.++|.+++++
T Consensus 142 ~---------------------~~~~~~g~--------------~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~ 186 (277)
T PRK09628 142 W---------------------TVTAQYGN--------------IDPTFDACKLATAAGASFVARESVIDPQKLEKLLVK 186 (277)
T ss_pred e---------------------eeeccCCC--------------cCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHH
Confidence 0 00000000 000123466789999987522233689999999999
Q ss_pred hHcCCCCCcEEEEEEec
Q 004227 413 VKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 413 a~~~~~~~P~lI~v~T~ 429 (767)
+.+ .++|++|++.+.
T Consensus 187 Al~--~~Gp~lIeV~~~ 201 (277)
T PRK09628 187 GFS--HKGFSFFDVFSN 201 (277)
T ss_pred HHh--CCCCEEEEEcCC
Confidence 987 589999999874
No 152
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.76 E-value=3.9e-08 Score=105.81 Aligned_cols=133 Identities=18% Similarity=0.258 Sum_probs=87.4
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCc-ccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcch
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGA-MTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGa-l~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg 331 (767)
|.+|.++|+|+|+++|+ ++++|||++|||+ ++.| ...+.+|.+.+.|+++||.||+.... |..|..+..+.+
T Consensus 69 g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGm-t~~q~s~tt~~g 141 (286)
T PRK11867 69 TIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGL-TKGQYSPTSPVG 141 (286)
T ss_pred hhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhh-hcCccCCCCCCC
Confidence 67888999999999985 6899999999995 7744 56799999999999999999973221 111111111000
Q ss_pred hhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHH
Q 004227 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQ 411 (767)
Q Consensus 332 ~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~ 411 (767)
... .+...|... -..+...+++++|..++....-.+.+++.++++
T Consensus 142 ~~~---------------------~~~~~g~~~--------------~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~ 186 (286)
T PRK11867 142 FVT---------------------KTTPYGSIE--------------PPFNPVELALGAGATFVARGFDSDVKQLTELIK 186 (286)
T ss_pred ccc---------------------ccccCCCCC--------------CCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHH
Confidence 000 000000000 001234568889987764434468999999999
Q ss_pred HhHcCCCCCcEEEEEEec
Q 004227 412 RVKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 412 ~a~~~~~~~P~lI~v~T~ 429 (767)
++.+ .++|++|++.+.
T Consensus 187 ~Al~--~~Gp~lIev~~~ 202 (286)
T PRK11867 187 AAIN--HKGFSFVEILQP 202 (286)
T ss_pred HHHh--CCCCEEEEEeCC
Confidence 9986 578999999763
No 153
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=98.74 E-value=3.2e-07 Score=113.50 Aligned_cols=254 Identities=17% Similarity=0.143 Sum_probs=165.0
Q ss_pred hHHHHHHHHHHHHHHhC--CCE---EEEeccccCCc--Chh-hhhhhC-----CCcEEeccccHHHHHHHH---------
Q 004227 466 TYTQYFAESLIKEAETD--DKI---VAIHAAMGGGT--GLN-YFQKRF-----PDRCFDVGIAEQHAVTFA--------- 523 (767)
Q Consensus 466 s~~~af~~aL~~~~~~d--~~i---vvi~aD~~gs~--gl~-~f~~~~-----P~R~~d~GIaE~~~vg~A--------- 523 (767)
+=.+|+.+.+.+..+.| -.+ -+++ ...|+. ++. .|.+.- -+-+|+.|++|.-+++++
T Consensus 29 ~G~qAivR~~l~q~~~D~~aG~~ta~~vs-GYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~~ 107 (1165)
T PRK09193 29 TGTQALVRLPLLQRERDRAAGLNTAGFVS-GYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNLF 107 (1165)
T ss_pred eHHHHHHHHHHHHhhHHHhcCCCccceEE-eeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccccc
Confidence 44577777777655555 223 2333 223332 222 232211 137899999999999999
Q ss_pred HHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCC--C---EEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecC
Q 004227 524 AGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKL--P---VRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPS 598 (767)
Q Consensus 524 aGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~l--p---Viiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Ps 598 (767)
.|.+..|.+.+++.-.+.+.|+.|.+++. ++... . |++++|..|..+ .|...|..++...-+|.|+.|+
T Consensus 108 ~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~-n~~G~~~~GGvv~v~gDDpg~~S-----Sq~eqdSr~~~~~a~iPvl~Ps 181 (1165)
T PRK09193 108 PGAKYDGVFGMWYGKGPGVDRSGDVFRHA-NAAGTSPHGGVLALAGDDHAAKS-----STLPHQSEHAFKAAGMPVLFPA 181 (1165)
T ss_pred cceeeccceEEEecCcCCccccHhHHHHH-HhhcCCCCCcEEEEEecCCCCcc-----ccchhhhHHHHHHcCCceeCCC
Confidence 77788999999999999999999998754 44433 1 555566656422 1222222333333466699999
Q ss_pred CHHHHHHHHHHHHhh---CCCCEEEEecCCCCc------------ccccCCCCCCCCcccC----ce-------------
Q 004227 599 DEAELMHMVATAAVI---DDRPSCFRFPRGNGI------------GAVLPPNNKGTPLEIG----KG------------- 646 (767)
Q Consensus 599 d~~E~~~~l~~A~~~---~~~P~~irl~r~~~~------------~~~~p~~~~~~~~~ig----k~------------- 646 (767)
|++|+.++.+++++. ..-|+.+|....... ....|. ++..+.+ ++
T Consensus 182 ~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~---~f~~~~~g~~~r~~~~p~~~~~~~~~ 258 (1165)
T PRK09193 182 NVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE---DFEMPPGGLNIRWPDPPLEQEARLLD 258 (1165)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc---cccCCcccccccCCCCcHHHHHHHHH
Confidence 999999999999873 455999877422100 001111 0111111 00
Q ss_pred ----------------eEeec--CCcEEEEEechhHHHHHHHHHHHhc-----CCCcEEEEEcccCCCCcHHHHHHHhcc
Q 004227 647 ----------------RILME--GDRVAILGYGSIVQQCVLAANMLKS-----QDISVTVADARFCKPLDTDLIRQLANE 703 (767)
Q Consensus 647 ----------------~vl~e--G~dvtIva~Gs~v~~al~Aa~~L~~-----~GI~v~VIdl~slkPlD~e~i~~~~~~ 703 (767)
++... +.++-||++|.....+++|.+.|-- +-+.++++.+-+.+|||.+.+++.++.
T Consensus 259 ~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~lg~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g 338 (1165)
T PRK09193 259 YKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDLGLDEETAARLGIRLYKVGMVWPLEPQGVRAFAEG 338 (1165)
T ss_pred HHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHcCCChhhhcccCCCEEEeCCCCCCCHHHHHHHHhc
Confidence 11111 3579999999999999999876521 112388999999999999999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHhcC
Q 004227 704 HEILITVEEGSVGGFGSHVCHFLTLSG 730 (767)
Q Consensus 704 ~~~vVvvEe~~~GGlgs~I~~~l~~~~ 730 (767)
.+.|+||||... =+..+|.+.+.+.+
T Consensus 339 ~~~vlVVEE~~p-~iE~qlk~~l~~~~ 364 (1165)
T PRK09193 339 LDEILVVEEKRQ-IIEYQLKEELYNWP 364 (1165)
T ss_pred CCEEEEEecCch-HHHHHHHHHHhhcc
Confidence 999999999753 45666666665543
No 154
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.70 E-value=3.7e-07 Score=90.05 Aligned_cols=143 Identities=14% Similarity=0.185 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhCC-CEEEEeccccCCcChhhhhh---h---------------CCCcEEeccccHHHHHHHHHHHHhc
Q 004227 469 QYFAESLIKEAETDD-KIVAIHAAMGGGTGLNYFQK---R---------------FPDRCFDVGIAEQHAVTFAAGLASE 529 (767)
Q Consensus 469 ~af~~aL~~~~~~d~-~ivvi~aD~~gs~gl~~f~~---~---------------~P~R~~d~GIaE~~~vg~AaGlA~~ 529 (767)
.++++.|.++++.|+ ++-++++|...|.+|....+ + -+++-+..-++|+.+.|++.|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 567888899998887 78899999998888753321 0 1234444559999999999999999
Q ss_pred CCeeEEeechhHHHhHHHHHHHhhhc-----------CCCC-EEEEeecCCc-cCCCCCCCCChhHHHHhhc-CCC-cEE
Q 004227 530 GVKPFCAIYSSFLQRGYDQVVHDVDL-----------QKLP-VRFAMDRAGL-VGADGPTHCGAFDVTFMSC-LPN-MVV 594 (767)
Q Consensus 530 G~rP~~~tys~Fl~ra~dQi~~~~a~-----------~~lp-Viiv~~~~Gl-~G~dG~TH~~~~Dla~lr~-iPg-~~V 594 (767)
|.+.++++|.+|+. ..|.++++-++ ...| +.++.+.-.. .+.+|.|||...=+..+.+ .|+ ++|
T Consensus 82 Grhglf~sYEAF~~-ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~Rv 160 (179)
T PF03894_consen 82 GRHGLFASYEAFAH-IVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVRV 160 (179)
T ss_dssp T-EEEEEEEGGGGG-GGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EEE
T ss_pred CCcccccccchhHH-HHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCccccee
Confidence 99999999999973 23333333232 2333 4444444333 4789999997665555554 344 679
Q ss_pred EecCCHHHHHHHHHHHHh
Q 004227 595 MAPSDEAELMHMVATAAV 612 (767)
Q Consensus 595 ~~Psd~~E~~~~l~~A~~ 612 (767)
|.|+|++-+..++..|++
T Consensus 161 ylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 161 YLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EE-SSHHHHHHHHHHHHH
T ss_pred ecCCcHhHHHHHHHHHhc
Confidence 999999999999999975
No 155
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.66 E-value=1e-06 Score=108.99 Aligned_cols=217 Identities=17% Similarity=0.125 Sum_probs=145.5
Q ss_pred cEEeccccHHHH---------HHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhh-cCCCC---EEEEeecCCccCCCC
Q 004227 508 RCFDVGIAEQHA---------VTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVD-LQKLP---VRFAMDRAGLVGADG 574 (767)
Q Consensus 508 R~~d~GIaE~~~---------vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a-~~~lp---Viiv~~~~Gl~G~dG 574 (767)
-+|+.|++|.-+ +.++.|.+..|.+.+++.-.+.+.|+.|.+++... +.... |++++|..|..+
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~S--- 162 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKS--- 162 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCcc---
Confidence 678999999999 55566666779999999999999999999876532 33333 555566656422
Q ss_pred CCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCCCCcc---c---------ccCCCCCCC
Q 004227 575 PTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRGNGIG---A---------VLPPNNKGT 639 (767)
Q Consensus 575 ~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~~~~~---~---------~~p~~~~~~ 639 (767)
.|...|..++...-+|.|+.|+|++|+.++...+++. ..-|+.++........ + ..|......
T Consensus 163 --Sq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~ 240 (1186)
T PRK13029 163 --SSVAHQSDHTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLP 240 (1186)
T ss_pred --ccCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCC
Confidence 2222222333333466699999999999999999873 4559998775321100 0 011100000
Q ss_pred C------cc--------------------cCce----eEee--cCCcEEEEEechhHHHHHHHHHHHhc-----CCCcEE
Q 004227 640 P------LE--------------------IGKG----RILM--EGDRVAILGYGSIVQQCVLAANMLKS-----QDISVT 682 (767)
Q Consensus 640 ~------~~--------------------igk~----~vl~--eG~dvtIva~Gs~v~~al~Aa~~L~~-----~GI~v~ 682 (767)
+ +. +.+. ++.. ++.++-||++|.....+++|.+.|-- +-+.++
T Consensus 241 ~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ 320 (1186)
T PRK13029 241 PGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIR 320 (1186)
T ss_pred ccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCC
Confidence 0 00 0000 1111 13579999999999999999876521 112488
Q ss_pred EEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcC
Q 004227 683 VADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSG 730 (767)
Q Consensus 683 VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~ 730 (767)
++.+-+.+|||.+.+++.++..+.|+||||... =+..+|.+.+.+.+
T Consensus 321 ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p-~iE~qlk~~l~~~~ 367 (1186)
T PRK13029 321 LLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA-VIEYQLKEELYNWR 367 (1186)
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch-HHHHHHHHHHhhcc
Confidence 999999999999999999999999999999753 45666777766544
No 156
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.65 E-value=1.1e-07 Score=106.68 Aligned_cols=205 Identities=21% Similarity=0.255 Sum_probs=123.4
Q ss_pred CCCCCHHH-HHHHHHHHHHHHHHHh--hccCCC-------CCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHh
Q 004227 152 MKNLSTED-LEQLAAELRADIVNSV--SKTGGH-------LSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILT 221 (767)
Q Consensus 152 ~k~~~~~~-L~~la~~iR~~i~~~v--~~~gGH-------~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~ 221 (767)
..++++++ |++|++.|++.-+..- .-...- -+..|.+..+.-.+-. |-+|.|.++-+.|-..|+..-
T Consensus 319 f~~l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~pLtq~~~w~~~~~-fl~p~dviiaetGtS~FG~~~-- 395 (557)
T COG3961 319 FTNLSMKDALQELAKKIDKRNLSAPPVAYPARTPPTPYPPANEPLTQEWLWNTVQN-FLKPGDVIIAETGTSFFGALD-- 395 (557)
T ss_pred cCCeeHHHHHHHHHHHhhhcccCCCCccCCCCCCCCCCCCCCCcccHHHHHHHHHh-hCCCCCEEEEcccccccccee--
Confidence 34555553 7788877776653221 101111 1233555555433322 348999999998865554310
Q ss_pred CChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHH
Q 004227 222 GRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGF 301 (767)
Q Consensus 222 G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~ 301 (767)
--+|+...-...+ =.||.|.++|+|+|.++|. ++++++.++|||++| ++.+++.+--+
T Consensus 396 ---------------~~lP~~~~~i~Q~-lWGSIG~t~pAalGa~~A~----~drR~IL~iGDGs~Q--lTvQEiStmiR 453 (557)
T COG3961 396 ---------------IRLPKGATFISQP-LWGSIGYTLPAALGAALAA----PDRRVILFIGDGSLQ--LTVQEISTMIR 453 (557)
T ss_pred ---------------eecCCCCeEEccc-chhhcccccHhhhhhhhcC----CCccEEEEEcCchhh--hhHHHHHHHHH
Confidence 1234332111111 2589999999999999997 689999999999999 88899999999
Q ss_pred cC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccC
Q 004227 302 LD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLIS 380 (767)
Q Consensus 302 ~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~ 380 (767)
++ .|+|||+||+|+ ++-..- .|+. ..|+.|..|
T Consensus 454 ~gl~p~ifvlNN~GY-TIEr~I-Hg~~----------------~~YNdI~~W---------------------------- 487 (557)
T COG3961 454 WGLKPIIFVLNNDGY-TIERAI-HGPT----------------APYNDIQSW---------------------------- 487 (557)
T ss_pred cCCCcEEEEEcCCCc-EEEehh-cCCC----------------cCccccccc----------------------------
Confidence 88 678888888786 332211 1111 235544433
Q ss_pred CChhhhHhhcCCeEeec-cCCCCHHHHHHHHHHhHcCCCCCcEEEEEEec
Q 004227 381 ASGSTFFEELGLYYIGP-VDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 381 ~~~~~lfea~G~~~i~~-vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~ 429 (767)
+..++.++||..-... ..-..-+++..+++.+.+. .+++.+|+|+..
T Consensus 488 -d~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~i~lIEv~lp 535 (557)
T COG3961 488 -DYTALPEAFGAKNGEAKFRATTGEELALALDVAFAN-NDRIRLIEVMLP 535 (557)
T ss_pred -chhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcC-CCceEEEEEecC
Confidence 1123467777431101 1123446677778777753 578999999864
No 157
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.65 E-value=9e-08 Score=102.83 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=83.3
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchh
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGA 332 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ 332 (767)
+.+|.++|+|+|+++|+ ++++|||++|||++. ++....+.+|.+.+.|+++||.||+...+ |..|..+..+.+.
T Consensus 53 t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGm-t~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLAN----PHLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGL-TKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHh-hhcccccCccCCc
Confidence 44588999999999885 789999999999963 35567899999999999999999973221 1111101100000
Q ss_pred hhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHH
Q 004227 333 LSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQR 412 (767)
Q Consensus 333 ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~ 412 (767)
-. . +...|... ..+.++...+++++|+...+ .-.+.++|.+++++
T Consensus 127 ~~------~---------------~~~~g~~~------------~~~np~~~a~A~g~g~va~~--~~~~~~eL~~ai~~ 171 (287)
T TIGR02177 127 KT------K---------------SLPYPNIQ------------DPVNPLLLAIALGYTFVARG--FSGDVAHLKEIIKE 171 (287)
T ss_pred ce------e---------------ecccCccC------------CCCCHHHHHHhCCCCeEEEE--ecCCHHHHHHHHHH
Confidence 00 0 00000000 00111122346666655432 22689999999999
Q ss_pred hHcCCCCCcEEEEEEec
Q 004227 413 VKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 413 a~~~~~~~P~lI~v~T~ 429 (767)
+.+ .++|.+|++.+.
T Consensus 172 Al~--~~GpslIeV~~p 186 (287)
T TIGR02177 172 AIN--HKGYALVDILQP 186 (287)
T ss_pred HHh--CCCCEEEEEeCC
Confidence 987 589999999863
No 158
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.63 E-value=1e-07 Score=112.71 Aligned_cols=127 Identities=24% Similarity=0.344 Sum_probs=89.1
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcch-HHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQA-YEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~-~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
.|.+|.++|+|+|+++|. ++++||+++|||++. +. ..+|.+|.+++.|+++||.||+.... +..+.....+.
T Consensus 402 ~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~--~~g~~eL~tav~~~~~i~~vVlnN~~~g~-~~~q~~~~~~~ 474 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFF--HTGIPGLINAVYNKANITVVILDNRITAM-TGHQPNPGTGV 474 (595)
T ss_pred eeccCchHHHHhhhhhcC----CCCCEEEEeccchhh--hcCHHHHHHHHHcCCCeEEEEEcCcceec-cCCCCCCCCCC
Confidence 378899999999998874 689999999999998 43 46799999999999999999974221 11110000000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
. ..+ ...-..+...+++++|+.++...+-.+++++.+++
T Consensus 475 ~---------------------------~~~--------------~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al 513 (595)
T TIGR03336 475 T---------------------------GMG--------------EATKEISIEELCRASGVEFVEVVDPLNVKETIEVF 513 (595)
T ss_pred C---------------------------CCC--------------CcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHH
Confidence 0 000 00001344566899999988766778889999999
Q ss_pred HHhHcCCCCCcEEEEEEe
Q 004227 411 QRVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T 428 (767)
+++.+ .++|++|++..
T Consensus 514 ~~a~~--~~gp~li~v~~ 529 (595)
T TIGR03336 514 KAALA--AEGVSVIIAKQ 529 (595)
T ss_pred HHHHh--cCCCEEEEEcc
Confidence 99886 57899999854
No 159
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.47 E-value=4.9e-07 Score=94.50 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=85.4
Q ss_pred EEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhc
Q 004227 509 CFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSC 588 (767)
Q Consensus 509 ~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~ 588 (767)
.+...-+|..+++++.|+|++|.|.++.|.+..+..+.|.+ ..++..++|++++...++..+..+++|+...|+.+.+.
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l-~~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d 116 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPL-YWAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARD 116 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCH-HHHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTT
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHH-HHHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHh
Confidence 56677999999999999999999999999999988888887 45689999988877554435556889999999877774
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCC
Q 004227 589 LPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (767)
Q Consensus 589 iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~ 625 (767)
-++.|+.|+|++|+.++...|++. ...|++++.+..
T Consensus 117 -~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 117 -SGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp -SS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred -cCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 578899999999999999999873 456999988653
No 160
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.46 E-value=5.4e-07 Score=117.35 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=89.9
Q ss_pred CCcccch--hHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHc--CCCEEEEEECCCCCccccccCCCC
Q 004227 251 GAGHSST--SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFL--DANLIVVLNDNKQVSLPTATLDGP 326 (767)
Q Consensus 251 g~G~~G~--~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~--~~nli~Iv~dN~~~S~pt~~~dg~ 326 (767)
+.|.+|. ++|.|+|+++|. +++|+|++|||+++ +...+|.+|.++ ++|+++||.||+...+-. .
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~-----~ 824 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGGAIFS-----L 824 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCcHhhh-----c
Confidence 4477777 599999999884 78899999999998 778899999874 899998888887311000 0
Q ss_pred CCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHH
Q 004227 327 ATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDL 406 (767)
Q Consensus 327 ~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l 406 (767)
. ++.. + ..+.. .+.+.-.....+...+.++||+++.. | .+.++|
T Consensus 825 l-~~~~------~-----------------------~~~~~---~~~~~~~~~~~df~~lA~a~G~~~~r-V--~~~~eL 868 (1655)
T PLN02980 825 L-PIAK------R-----------------------TEPRV---LNQYFYTSHDISIENLCLAHGVRHLH-V--GTKSEL 868 (1655)
T ss_pred C-ccCC------C-----------------------Ccchh---HHHHhcCCCCCCHHHHHHHcCCceee-c--CCHHHH
Confidence 0 0000 0 00000 00100001124667889999999874 3 589999
Q ss_pred HHHHHHhHcCCCCCcEEEEEEecCC
Q 004227 407 VTIFQRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 407 ~~al~~a~~~~~~~P~lI~v~T~KG 431 (767)
.++++++.+ .++|++|+|.|.+-
T Consensus 869 ~~aL~~a~~--~~~p~lIEV~t~~~ 891 (1655)
T PLN02980 869 EDALFTSQV--EQMDCVVEVESSID 891 (1655)
T ss_pred HHHHHHhhc--cCCCEEEEEecChh
Confidence 999998876 57899999999753
No 161
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.35 E-value=1.2e-05 Score=89.73 Aligned_cols=205 Identities=20% Similarity=0.251 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcC-CC-CcEEEeCCCChHHHHHHHhCChHHhHHHHhcC
Q 004227 157 TEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFN-TP-DDKIIWDVGHQAYVHKILTGRRSRMNTMRKTS 234 (767)
Q Consensus 157 ~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~-~p-~Dr~i~s~GH~~y~~~~l~G~~~~l~tlr~~g 234 (767)
.++|++.+++-|....++..+.+- .|- ...+|+.+-. -| +|-|+.+-|--. .-.| |+.
T Consensus 355 ~k~Lrek~~~ne~~~~~~~~~~~~----pLN---~~~~~~~vre~L~~~d~ilVsEGant----mdig--------r~~- 414 (571)
T KOG1185|consen 355 VKELREKDKQNEAAVEEKAAKKST----PLN---YYQVLQTVRELLPNDDTILVSEGANT----MDIG--------RTL- 414 (571)
T ss_pred HHHHHHHHHhhHHHHHHHhhccCC----CCc---HHHHHHHHHHhcCCCCcEEEecCCcc----hhhh--------hhh-
Confidence 466777777777777666654322 132 2334443321 25 788888655221 1111 110
Q ss_pred CCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCC
Q 004227 235 GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (767)
Q Consensus 235 gl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~ 314 (767)
-.+-.|.+. .+.+.| |.||-|++.|++.|+ -.+++.|||+-||+++ |...-.+.++.++++|+++||-||+
T Consensus 415 l~~~~Pr~r-LDaGtf--gTMGVG~Gfalaaa~----~~P~~~V~~veGDsaF--GfSaME~ET~vR~~Lpvv~vV~NN~ 485 (571)
T KOG1185|consen 415 LPPRGPRRR-LDAGTF--GTMGVGLGFALAAAL----AAPDRKVVCVEGDSAF--GFSAMELETFVRYKLPVVIVVGNNN 485 (571)
T ss_pred ccCCCcccc-cCCccc--cccccchhHHHHHHh----hCCCCeEEEEecCccc--CcchhhHHHHHHhcCCeEEEEecCC
Confidence 012334332 223334 445555555555544 4599999999999999 5666668899999999998887665
Q ss_pred CC-ccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCe
Q 004227 315 QV-SLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY 393 (767)
Q Consensus 315 ~~-S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~ 393 (767)
.+ ...++ .|.+|+ ++.+........- .-......+.++||-+
T Consensus 486 Giyg~d~~-----------------------~~~~I~-------e~~~~~~~p~~~l-------~~~~rY~~v~ka~G~k 528 (571)
T KOG1185|consen 486 GIYGLDDD-----------------------GWKQIS-------EQDPTLDLPPTAL-------LANTRYDKVAKAFGGK 528 (571)
T ss_pred cccccCcc-----------------------cHHHHh-------hcCcccCCCcccc-------cccccHHHHHHHcCCC
Confidence 33 21110 122222 1110000000000 0001122346777755
Q ss_pred EeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCC
Q 004227 394 YIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 394 ~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG 431 (767)
.. .|+ .+++|..+++++.+. .++|++|.+...+.
T Consensus 529 G~-~v~--t~~el~~~l~~a~q~-~~~psvINVlI~p~ 562 (571)
T KOG1185|consen 529 GY-FVS--TVEELLAALQQACQD-TDKPSVINVLIGPT 562 (571)
T ss_pred ce-eeC--CHHHHHHHHHHHHhc-CCCCeEEEEEeccc
Confidence 33 243 899999999988763 56999999876544
No 162
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.29 E-value=0.00016 Score=81.58 Aligned_cols=247 Identities=16% Similarity=0.188 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHHHHhCCCEEEEeccccCCcChh---------------hhhhhCC--Cc---EEeccccHHHHHHHHHH
Q 004227 466 TYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLN---------------YFQKRFP--DR---CFDVGIAEQHAVTFAAG 525 (767)
Q Consensus 466 s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~---------------~f~~~~P--~R---~~d~GIaE~~~vg~AaG 525 (767)
.|..|=+-++-.++-+.-++-+-+.|+|.++--. .+..--+ +. +-|..++|.+..|+-.|
T Consensus 565 DWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyG 644 (913)
T KOG0451|consen 565 DWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYG 644 (913)
T ss_pred chHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcc
Confidence 4555555566777888888888899998765210 0000001 22 34678999999999999
Q ss_pred HHhcC--CeeEEee-chhHHHhH---HHHHHHhh-h--cCCCCEEEEeecCCccCCCCCCCCChhHHHHhhc--------
Q 004227 526 LASEG--VKPFCAI-YSSFLQRG---YDQVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSC-------- 588 (767)
Q Consensus 526 lA~~G--~rP~~~t-ys~Fl~ra---~dQi~~~~-a--~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~-------- 588 (767)
|+.+. ..++++. |.+|..-| +|.++... + +...-+++...| |+.| -||-|+...--.++.-
T Consensus 645 msienP~~L~iWEAQFGDFfNGAQIIiDTFi~sgE~KWl~ssglvmLLPH-GyDG-AgpeHSSCRiERFLQlCDS~E~~v 722 (913)
T KOG0451|consen 645 MSIENPNNLIIWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPH-GYDG-AGPEHSSCRIERFLQLCDSKETSV 722 (913)
T ss_pred cccCCcccceeehhhhcccccCceEEEeeeecccchhhhhhCCeEEEccC-CcCC-CCCccchhhHHHHHHHhccccccC
Confidence 99985 5667765 88886332 23221110 0 112234444444 4444 3788887543334332
Q ss_pred ---CCCcEEEecCCHHHHHHHHHHHH-hhCCCCEEEEecCCCCcccccCC-------CCCCCCc--ccCceeEeec-CCc
Q 004227 589 ---LPNMVVMAPSDEAELMHMVATAA-VIDDRPSCFRFPRGNGIGAVLPP-------NNKGTPL--EIGKGRILME-GDR 654 (767)
Q Consensus 589 ---iPg~~V~~Psd~~E~~~~l~~A~-~~~~~P~~irl~r~~~~~~~~p~-------~~~~~~~--~igk~~vl~e-G~d 654 (767)
--||.|+-|.++.+..++++.-+ ...++|.++..|+-.+. +|. ...+..+ .+|.- +.++ .-+
T Consensus 723 DGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLR---lPaA~ST~~ef~PGTtf~nVigd~-~~~p~kvk 798 (913)
T KOG0451|consen 723 DGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLR---LPAATSTHEEFQPGTTFHNVIGDT-IAKPEKVK 798 (913)
T ss_pred CCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhh---CcchhhhHhhcCCCcccccccccc-ccChhHhe
Confidence 23699999999999999997544 45678988877654321 121 0011111 12221 1111 226
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC----CEEEEEcCCC-CCCHH
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH----EILITVEEGS-VGGFG 719 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~----~~vVvvEe~~-~GGlg 719 (767)
-+|+++|-......++-+.+-.+. .+.++.+-.+-|||.+.+...++++ +.|..-||+. .|-|.
T Consensus 799 kvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWs 867 (913)
T KOG0451|consen 799 KVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWS 867 (913)
T ss_pred EEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcce
Confidence 788999998888777766553322 3788999999999999887766654 4677889987 46663
No 163
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.17 E-value=1.1e-05 Score=88.37 Aligned_cols=175 Identities=16% Similarity=0.201 Sum_probs=114.8
Q ss_pred HHhhcCCCCcEEEeCCCChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC
Q 004227 195 LHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK 274 (767)
Q Consensus 195 L~~~~~~p~Dr~i~s~GH~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~ 274 (767)
|-.+-++-.|++|.++|-..+-++... +.+.+....+ . +. -|.|.+|.|||+|+|..+|. +
T Consensus 481 Ldk~t~d~~~kviitTGVGqHQMWAAq-----fy~w~kP~~~--~-----tS---GGLGtMGfGLPAAIGAsVA~----P 541 (675)
T KOG4166|consen 481 LDKLTDDTGRKVIITTGVGQHQMWAAQ-----FYNWKKPRQW--L-----TS---GGLGTMGFGLPAAIGASVAN----P 541 (675)
T ss_pred HHHhccCcCceEEEeccccHHHHHHHH-----HhcccCccce--e-----ec---CCccccccCcchhhcccccC----c
Confidence 333334446788888876655444432 2222221110 0 11 26688999999999999884 8
Q ss_pred CCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHH
Q 004227 275 NNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAK 354 (767)
Q Consensus 275 ~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k 354 (767)
+..|+=+-||+++. |....|.++...++|+-+++.||..+. ...
T Consensus 542 ~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeqG--------MVt-------------------------- 585 (675)
T KOG4166|consen 542 DAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQG--------MVT-------------------------- 585 (675)
T ss_pred ccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhhh--------hHH--------------------------
Confidence 99999999999998 888889999999999999999997421 111
Q ss_pred HHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCC
Q 004227 355 SITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGY 434 (767)
Q Consensus 355 ~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~ 434 (767)
+++++..+.+..-..-..+++-.+++++|+...+. ..-++|.+.+++..+ .+||++++|...+-..+
T Consensus 586 --------QWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV---~K~edL~~k~kefls--TkGPvLleV~v~~kehV 652 (675)
T KOG4166|consen 586 --------QWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRV---TKKEDLREKIKEFLS--TKGPVLLEVIVPHKEHV 652 (675)
T ss_pred --------HHHHHHHHhhhccccccCccHHHHHHhcCCchhee---ehHHHHHHHHHHHhC--CCCCeEEEEEccCccce
Confidence 11333322111111122456667899999986633 456788888888776 58999999987655444
Q ss_pred Chh
Q 004227 435 PPA 437 (767)
Q Consensus 435 ~~a 437 (767)
-|+
T Consensus 653 lPm 655 (675)
T KOG4166|consen 653 LPM 655 (675)
T ss_pred eee
Confidence 333
No 164
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.17 E-value=1.1e-05 Score=89.38 Aligned_cols=136 Identities=23% Similarity=0.348 Sum_probs=97.8
Q ss_pred CCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCC
Q 004227 246 VHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDG 325 (767)
Q Consensus 246 ~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg 325 (767)
-|..+|..-||.-++-++|+.+| .+++-||+++|||+.. |..-.|.++..+...+++++.||...
T Consensus 437 YH~EYgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~Gy--------- 501 (617)
T COG3962 437 YHLEYGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGY--------- 501 (617)
T ss_pred eeeeecccccccccccccccccC----CCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCc---------
Confidence 35556777888889988887744 5789999999999999 88888999999999999999999631
Q ss_pred CCCcchhhhHHHHHhhhc---hh-HHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCC
Q 004227 326 PATPVGALSSALSKLQAS---TN-FRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGH 401 (767)
Q Consensus 326 ~~~~vg~ls~~L~~l~~~---~~-~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh 401 (767)
|. +.+||-. .. ++++|.... . ..++.-+++.-++++|..... | +
T Consensus 502 -----GC----In~LQm~~Gg~sf~~~~r~~~~-------------------e-~~~~~vDfA~~A~s~Ga~~~k-v--~ 549 (617)
T COG3962 502 -----GC----INRLQMATGGASFNNLLRDTDH-------------------E-EEILQVDFAAHAESYGAKAYK-V--G 549 (617)
T ss_pred -----ch----hhhhhhhcCcchhhhhhhhhcc-------------------c-CCCCcccHHHHHhhcCceeEe-c--C
Confidence 11 1222211 11 222222100 0 123345666678999988653 3 6
Q ss_pred CHHHHHHHHHHhHcCCCCCcEEEEEEecC
Q 004227 402 NVEDLVTIFQRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 402 di~~l~~al~~a~~~~~~~P~lI~v~T~K 430 (767)
++++|..+|+.+|+ ..++++|+++|..
T Consensus 550 ~i~eL~aAL~~Ak~--~~~ttvi~I~t~P 576 (617)
T COG3962 550 TIEELEAALADAKA--SDRTTVIVIDTDP 576 (617)
T ss_pred CHHHHHHHHHHHHh--CCCCEEEEEecCC
Confidence 99999999999998 6899999999864
No 165
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.08 E-value=8.5e-06 Score=91.59 Aligned_cols=65 Identities=25% Similarity=0.287 Sum_probs=51.4
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCcccccc
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTAT 322 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~ 322 (767)
.||.|.++++++|.|+|. ++++|+.|+|||+++ ++.+.+.++.+|++|.++++.||+.+++..+-
T Consensus 414 wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GYTIE~~I 478 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGYTIEVEI 478 (561)
T ss_pred Eeeccccchhhhhhhhcc----CCceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCceEEEEee
Confidence 489999999999999986 679999999999999 77788999999996655555555433543333
No 166
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.04 E-value=0.00073 Score=78.14 Aligned_cols=240 Identities=18% Similarity=0.199 Sum_probs=149.6
Q ss_pred HHHHhCCCEEEEeccccCCcC------hh----------hhhhhCC----CcEEeccccHHHHHHHHHHHHhcC--CeeE
Q 004227 477 KEAETDDKIVAIHAAMGGGTG------LN----------YFQKRFP----DRCFDVGIAEQHAVTFAAGLASEG--VKPF 534 (767)
Q Consensus 477 ~~~~~d~~ivvi~aD~~gs~g------l~----------~f~~~~P----~R~~d~GIaE~~~vg~AaGlA~~G--~rP~ 534 (767)
.++++.-.|-+-+.|+..+|- |. .+..-.| --+-|..++|.+.+|+-.|.|++. ...+
T Consensus 661 sLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVl 740 (1017)
T KOG0450|consen 661 SLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVL 740 (1017)
T ss_pred HHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEE
Confidence 445555566667788765541 10 1111123 345689999999999999999985 5666
Q ss_pred Eee-chhHH---HhHHHHHHHhhh---cCCCCEEEEeecCCccCCCCCCCCChhHHHHhhc-------------------
Q 004227 535 CAI-YSSFL---QRGYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSC------------------- 588 (767)
Q Consensus 535 ~~t-ys~Fl---~ra~dQi~~~~a---~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~------------------- 588 (767)
.+. |.+|. |..+||++...- ....-+++...| |+-| .||-|+...--.|+.-
T Consensus 741 WEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPH-GyeG-~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql 818 (1017)
T KOG0450|consen 741 WEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPH-GYEG-MGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQL 818 (1017)
T ss_pred eehhhccccccchhhHHhHhccchhhhhhhcCeEEEccC-CcCC-CCcccccccHHHHHHhccCCCccCCcccHHHHHHH
Confidence 665 88885 888999863311 133445555555 4333 5888986432222210
Q ss_pred -CCCcEEEecCCHHHHHHHHHHHHh-hCCCCEEEEecCCCCccc----ccCCCCCCCCc-----ccCceeEeecCCcEEE
Q 004227 589 -LPNMVVMAPSDEAELMHMVATAAV-IDDRPSCFRFPRGNGIGA----VLPPNNKGTPL-----EIGKGRILMEGDRVAI 657 (767)
Q Consensus 589 -iPg~~V~~Psd~~E~~~~l~~A~~-~~~~P~~irl~r~~~~~~----~~p~~~~~~~~-----~igk~~vl~eG~dvtI 657 (767)
--|++|+-++.+....++++.-+. --++|.+|+.|+..+... .+.+..++..+ +-|+...-.|+-+-.|
T Consensus 819 ~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv 898 (1017)
T KOG0450|consen 819 QDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLV 898 (1017)
T ss_pred hcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEEE
Confidence 126899999999999999987765 345799999987653221 01111111111 0122212224456788
Q ss_pred EEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC---CEEEEEcCCC-CCCHH
Q 004227 658 LGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH---EILITVEEGS-VGGFG 719 (767)
Q Consensus 658 va~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~---~~vVvvEe~~-~GGlg 719 (767)
+|+|-.....-++-+.... --++.+..+-.|.|||.+++++.++++ +.+..-||+. .|.|.
T Consensus 899 ~csGkVyydL~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~ 963 (1017)
T KOG0450|consen 899 FCSGKVYYDLTKERKEVGL-EGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWD 963 (1017)
T ss_pred EecceEehhhhHHHHhcCc-ccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchh
Confidence 9999877665555544321 236888999999999999998877654 5677779987 46664
No 167
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=97.99 E-value=0.00029 Score=84.57 Aligned_cols=206 Identities=17% Similarity=0.199 Sum_probs=131.4
Q ss_pred cEEeccccHHHHHHHHHHHHhcCCeeEEee---chhHH---HhHHHHHHHhhh---cCCCCEEEEeecCCccCCCCCCCC
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCAI---YSSFL---QRGYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHC 578 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t---ys~Fl---~ra~dQi~~~~a---~~~lpViiv~~~~Gl~G~dG~TH~ 578 (767)
..+|.+.+|.+++++=.|.+..--+.++.. |.+|. |..+||.+...- .....+++...|+ +-| .||.|+
T Consensus 628 ~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHg-yEG-QGPEHS 705 (906)
T COG0567 628 EVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHG-YEG-QGPEHS 705 (906)
T ss_pred EEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccCC-CCC-CCCcCc
Confidence 357999999999999999999864444333 77775 678888653311 1234455555553 223 689999
Q ss_pred ChhHHHHhhc--CCCcEEEecCCHHHHHHHHHHH-HhhCCCCEEEEecCCCCcccccCCCCCCCCcccCcee-Eeec---
Q 004227 579 GAFDVTFMSC--LPNMVVMAPSDEAELMHMVATA-AVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGR-ILME--- 651 (767)
Q Consensus 579 ~~~Dla~lr~--iPg~~V~~Psd~~E~~~~l~~A-~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~-vl~e--- 651 (767)
....-.++.- =-||+|..|+.+...+++++.- .....+|.++..|+..+....... .-..+.-++.+ ++.+
T Consensus 706 SaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S--~~~el~~~~F~~vl~d~~~ 783 (906)
T COG0567 706 SARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVS--SLEELTEGTFQPVLEDIDE 783 (906)
T ss_pred cchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCC--chhhhchhhhhhhhccccc
Confidence 8655555443 3489999999999999999754 444567999988876532110000 00011111111 2211
Q ss_pred -C--CcEEEEEechhHHHHHHHHHHHhcCC-CcEEEEEcccCCCCcHHHHHHHhccC----CEEEEEcCCC-CCCHHH
Q 004227 652 -G--DRVAILGYGSIVQQCVLAANMLKSQD-ISVTVADARFCKPLDTDLIRQLANEH----EILITVEEGS-VGGFGS 720 (767)
Q Consensus 652 -G--~dvtIva~Gs~v~~al~Aa~~L~~~G-I~v~VIdl~slkPlD~e~i~~~~~~~----~~vVvvEe~~-~GGlgs 720 (767)
+ -.-+++|+|-+.....+.. ++.| .++-++.+..+.|||.+.+.+.+++. ..+..-||.. .|-|.-
T Consensus 784 ~~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~ 858 (906)
T COG0567 784 LDPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYY 858 (906)
T ss_pred cccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHHH
Confidence 1 2456788887766555444 3344 36889999999999999988776553 4566677765 577753
No 168
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.59 E-value=0.0025 Score=62.50 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCC--CCCCCChhHH
Q 004227 506 PDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGAD--GPTHCGAFDV 583 (767)
Q Consensus 506 P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~d--G~TH~~~~Dl 583 (767)
.-+++.+- .|+.++.+|.|.++.|.+.++.+..+.+..+.+.+.+. ...+.|++++....+..+.+ ...|+..+..
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~~a-~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~ 118 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALYLA-AGAELPLVIVVAQRPGPSTGLPKPDQSDLMAA 118 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHHHH-HhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHH
Confidence 45778776 99999999999999988855566788888888887544 45689999987554432222 2233334443
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEec
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFP 623 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~ 623 (767)
.+++ |-.-++.+.+++|+..+++.|+.. .++|++++++
T Consensus 119 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 119 RYGG--HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HhCC--CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3333 245678899999999999988862 3479998864
No 169
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.54 E-value=0.0002 Score=82.84 Aligned_cols=124 Identities=27% Similarity=0.398 Sum_probs=82.7
Q ss_pred cchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhh
Q 004227 255 SSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALS 334 (767)
Q Consensus 255 ~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls 334 (767)
+|.|++.|-|++++. ++++++++|||.+--- -..++.+|.+.+.|++++|-||.. ...|..|.-+...+...
T Consensus 430 mGssig~a~g~~~~~-----~k~~va~iGDsTF~Hs-Gi~~l~nAV~n~~~~~~vvLdN~~-tAMTGgQp~pg~~~~~~- 501 (640)
T COG4231 430 MGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHS-GILALINAVYNKANILVVVLDNRT-TAMTGGQPHPGTGVAAE- 501 (640)
T ss_pred ccchhhhcccccccc-----CCceEEEecccccccc-CcHHHHHHHhcCCCeEEEEEeccc-hhccCCCCCCCcccccC-
Confidence 445566776776653 4899999999998643 236799999999999999999985 22333332221101000
Q ss_pred HHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhH
Q 004227 335 SALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVK 414 (767)
Q Consensus 335 ~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~ 414 (767)
|.. ...-.+ ..+.+++|..++..+|-+|++++.+++++++
T Consensus 502 --------------------------g~~--~~~i~i------------ee~~r~~Gv~~v~~vdp~~~~~~~~~~keal 541 (640)
T COG4231 502 --------------------------GTK--STAIVI------------EEVVRAMGVEDVETVDPYDVKELSEAIKEAL 541 (640)
T ss_pred --------------------------CCc--cceeEh------------hHhhhhcCceeeeccCCcchHHHHHHHHHHh
Confidence 000 000000 1235778988888899999999999999999
Q ss_pred cCCCCCcEEEEEEe
Q 004227 415 EMPAPGPVLIHVVT 428 (767)
Q Consensus 415 ~~~~~~P~lI~v~T 428 (767)
+ .++|.+|+++-
T Consensus 542 e--~~gpsViiak~ 553 (640)
T COG4231 542 E--VPGPSVIIAKR 553 (640)
T ss_pred c--CCCceEEEEcC
Confidence 8 46799998753
No 170
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.54 E-value=0.00045 Score=74.86 Aligned_cols=130 Identities=23% Similarity=0.334 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCeEEEEEcCC-cccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhH
Q 004227 257 TSISAGLGMAVARDILGKNNNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSS 335 (767)
Q Consensus 257 ~~ls~A~G~AlA~kl~g~~~~Vv~viGDG-al~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~ 335 (767)
-+++.|.|+.+|.+ +..||++-||| +...|. ..+..|.+.+.++++|+-||. +..-|..|..++.+.|+..+
T Consensus 74 ra~a~atGik~A~~----~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNe-vYgnTggQ~S~tTp~G~~t~ 146 (294)
T COG1013 74 RAAAVATGIKLANP----ALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNE-VYGNTGGQASPTTPKGAKTK 146 (294)
T ss_pred cchhhHHHHHHhcc----CCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCe-ecccCCCccCCCCCCCceee
Confidence 35889999999874 66899999999 677664 678888999999999999998 34456666666666665311
Q ss_pred HHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHc
Q 004227 336 ALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE 415 (767)
Q Consensus 336 ~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~ 415 (767)
. ...|+... .| .+-..++-++|..||..+---+..++.+.+++|.+
T Consensus 147 t---------------------~p~Gk~~~---~k----------~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~ 192 (294)
T COG1013 147 T---------------------TPYGKRSE---KK----------KDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE 192 (294)
T ss_pred e---------------------cCCCCCcC---CC----------CCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh
Confidence 0 00111000 11 12234577888888766544568888888888876
Q ss_pred CCCCCcEEEEEEec
Q 004227 416 MPAPGPVLIHVVTE 429 (767)
Q Consensus 416 ~~~~~P~lI~v~T~ 429 (767)
..||.+|++.+.
T Consensus 193 --~~Gps~I~v~sP 204 (294)
T COG1013 193 --HKGPSFIDVLSP 204 (294)
T ss_pred --ccCCeEEEEecC
Confidence 469999999873
No 171
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.15 E-value=0.0077 Score=58.63 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=81.8
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCe-eEEee-chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVK-PFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~r-P~~~t-ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
-|++.+ ..|..++.+|.|++..+-| +++.+ ..+.+..+...+. .+...++|++++....+.....-.+||..+...
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~-~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA-NAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH-HHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 466655 7999999999999998554 44443 5676767777764 446679999998765554333333466666667
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhhC----CCCEEEEec
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVID----DRPSCFRFP 623 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~----~~P~~irl~ 623 (767)
+++.+-.+ .+...+++++...+..|++.. .+|++|.+|
T Consensus 113 ~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 113 LFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 77877544 677789999999999888742 469998775
No 172
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.03 E-value=0.0062 Score=68.07 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=84.7
Q ss_pred hhhhCCC-cEEeccccHHHHHHHHHHHHhc-CCeeEEeechhHHHhHHHHHHHh--hhcCCCCEEEEeecCCccC-CCCC
Q 004227 501 FQKRFPD-RCFDVGIAEQHAVTFAAGLASE-GVKPFCAIYSSFLQRGYDQVVHD--VDLQKLPVRFAMDRAGLVG-ADGP 575 (767)
Q Consensus 501 f~~~~P~-R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~tys~Fl~ra~dQi~~~--~a~~~lpViiv~~~~Gl~G-~dG~ 575 (767)
+.++.|+ |++-+ -+|..++++|+|+.++ |.+|++.+-.+.+..+...+... ....++|+++++..+|-.| .|=|
T Consensus 20 ~~~~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~dep 98 (361)
T TIGR03297 20 ITDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEP 98 (361)
T ss_pred HHhcCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCc
Confidence 3334543 55544 6799999999999999 99999999777776666665333 2346999999999999766 5678
Q ss_pred CCC--ChhHHHHhhcCCCcEEEe-cCCHHHHHHHHHHHHh---hCCCCEEEEecCCCC
Q 004227 576 THC--GAFDVTFMSCLPNMVVMA-PSDEAELMHMVATAAV---IDDRPSCFRFPRGNG 627 (767)
Q Consensus 576 TH~--~~~Dla~lr~iPg~~V~~-Psd~~E~~~~l~~A~~---~~~~P~~irl~r~~~ 627 (767)
+|. +.--..+|..+ ++.... |.+..|....+..+++ ..++|+.+.+.++-.
T Consensus 99 qh~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 99 QHVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred hhhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 884 33233445543 444333 3556666555555543 367899999987653
No 173
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.0008 Score=77.37 Aligned_cols=59 Identities=29% Similarity=0.475 Sum_probs=52.6
Q ss_pred hHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc
Q 004227 386 FFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (767)
Q Consensus 386 lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (767)
.|++|||+.. .|||||+++|.+++.+++.. .++|+.|.++|.+|+|.+..+ +..|||.+
T Consensus 200 r~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~i~~~t~~g~G~~~ig--~~~~Hg~p 258 (632)
T KOG0523|consen 200 RFEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTAIKATTFIGRGSPYIG--SESVHGAP 258 (632)
T ss_pred HHHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCceeeeeeeeeecCccccc--cccccCCc
Confidence 3999999987 89999999999999999854 589999999999999988765 68899876
No 174
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=96.90 E-value=0.0056 Score=67.84 Aligned_cols=114 Identities=23% Similarity=0.309 Sum_probs=76.8
Q ss_pred CeEEEEEcCC-cccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHH
Q 004227 276 NNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAK 354 (767)
Q Consensus 276 ~~Vv~viGDG-al~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k 354 (767)
..||++-||| +..-|. ..+..|...+.|+++||.||.- ...|.-|..++.+.|+..+.
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~-Y~nTGgQ~S~tTp~Ga~t~t------------------ 210 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEV-YSNTGGQASKATPLGAVAKF------------------ 210 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcc-cccCCCcCCCCCCCcCcCcc------------------
Confidence 4899999999 456554 6788888888999999999983 33455555566666654211
Q ss_pred HHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccC-CCCHHHHHHHHHHhHcCCCCCcEEEEEEec
Q 004227 355 SITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVD-GHNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 355 ~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vD-Ghdi~~l~~al~~a~~~~~~~P~lI~v~T~ 429 (767)
...|.... | .+-..++.++|..|+-.+- |-++.++.+++++|.+ .+||.+|++.+.
T Consensus 211 ---sp~Gk~~~----k----------kd~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~--~~Gps~I~v~sP 267 (365)
T cd03377 211 ---AAAGKRTG----K----------KDLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEA--YDGPSLIIAYSP 267 (365)
T ss_pred ---CCCCCCCC----C----------cCHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhc--CCCCEEEEEEcc
Confidence 00011000 0 1112346778888876554 3589999999999987 589999999874
No 175
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=96.76 E-value=0.0015 Score=70.11 Aligned_cols=133 Identities=23% Similarity=0.283 Sum_probs=87.0
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcch
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVG 331 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg 331 (767)
+|.+|+.+|+|+|.-.|. +++.+|++-||-.++ ...|.|...+..++|.|-|+-||.+.
T Consensus 418 agplgwtipaalgv~~ad----p~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnayl--------------- 476 (592)
T COG3960 418 AGPLGWTIPAALGVCAAD----PKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYL--------------- 476 (592)
T ss_pred cCCcccccchhhceeecC----CCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHH---------------
Confidence 589999999999987764 788999999999998 78899999999999999999999762
Q ss_pred hhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHH---HhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 332 ALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEY---ARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 332 ~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~---~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
+.||++-.++.- + ..+.-.+++. ..+-..-+.-+..|++|++.+.. .+.+++..
T Consensus 477 ---------------glirqaqr~f~m----d-y~v~laf~nin~~~~~gygvdhv~v~eglgckairv---~~p~e~a~ 533 (592)
T COG3960 477 ---------------GLIRQAQRAFDM----D-YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---FKPEDIAP 533 (592)
T ss_pred ---------------HHHHHHHhcCCc----c-ceeeehhhccCCccccccCccceeehhccCceeEEe---cChHHhhH
Confidence 223333211100 0 0000000000 00011123345679999988755 46677777
Q ss_pred HHHHhHcC--CCCCcEEEEEEe
Q 004227 409 IFQRVKEM--PAPGPVLIHVVT 428 (767)
Q Consensus 409 al~~a~~~--~~~~P~lI~v~T 428 (767)
+|++++.. +..-|+++++.-
T Consensus 534 af~~a~~lm~eh~vpvvve~il 555 (592)
T COG3960 534 AFEQAKALMAQHRVPVVVEVIL 555 (592)
T ss_pred HHHHHHHHHHhcCCCeeeehHH
Confidence 77776542 356799888754
No 176
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.38 E-value=0.049 Score=54.24 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=80.4
Q ss_pred hhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEe-e-chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccC-CCCCC
Q 004227 500 YFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-I-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPT 576 (767)
Q Consensus 500 ~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~-t-ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G-~dG~T 576 (767)
.+.+..--|++. ...|++++.+|.|++..+-+|-+. + ..+.+..+..-+. .+...+.|++++....+... ..+..
T Consensus 33 al~~~~~i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~-~A~~~~~Pvl~i~g~~~~~~~~~~~~ 110 (172)
T PF02776_consen 33 ALEKSPGIRFIP-VRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLA-NAYADRIPVLVITGQRPSAGEGRGAF 110 (172)
T ss_dssp HHHHTTTSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHH-HHHHTT-EEEEEEEESSGGGTTTTST
T ss_pred Hhhhhcceeeec-ccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHh-hcccceeeEEEEecccchhhhccccc
Confidence 344332346776 499999999999999875554444 3 4455555555543 34567999999886655422 25677
Q ss_pred CCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh----hCCCCEEEEecCC
Q 004227 577 HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (767)
Q Consensus 577 H~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~----~~~~P~~irl~r~ 625 (767)
|+..+...+++.+-.+ .+.+.++.++...++.|++ ...+|++|.+|..
T Consensus 111 q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 111 QQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp TSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred ccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 7677777788876543 5666666666666666655 3578999998864
No 177
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.24 E-value=0.016 Score=73.07 Aligned_cols=60 Identities=20% Similarity=0.148 Sum_probs=47.9
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCc
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS 317 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S 317 (767)
-+||.+++.++|++.+. .+++||+++|||.+---- .-|+-+|.+.+.|++++|-||....
T Consensus 468 ~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG-~~al~~AV~~~~nit~~IL~N~~tA 527 (1159)
T PRK13030 468 TQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSG-SLAIRQAVAAGANITYKILYNDAVA 527 (1159)
T ss_pred eccCccchhhceecccc----CCCCEEEEeccchhhhcC-HHHHHHHHhcCCCeEEEEEeCCccc
Confidence 46777888888888773 457899999999986432 2389999999999999999998543
No 178
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=96.02 E-value=0.1 Score=60.27 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEE-ECCCC---CccccccCCCCCCcchhh
Q 004227 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVL-NDNKQ---VSLPTATLDGPATPVGAL 333 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv-~dN~~---~S~pt~~~dg~~~~vg~l 333 (767)
.+|-|+|++.|. ...++.++||=++---+. ++-.......|+++|| ||||. .-+|+....
T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~N--gLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~--------- 490 (566)
T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSFLHDLN--GLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSE--------- 490 (566)
T ss_pred hHHHHhhhhhhc-----CCceEEEEechhhhhccc--hHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCc---------
Confidence 489999999974 666999999988753322 3333333447776666 55542 222332210
Q ss_pred hHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHh
Q 004227 334 SSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRV 413 (767)
Q Consensus 334 s~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a 413 (767)
.. ++.+..-+-.-+++.+.+.||..|..+ ++++++.++++.+
T Consensus 491 --------------------------------~~---fe~~F~tPh~ldF~~la~~y~l~y~~~---~s~~~l~~~~~~~ 532 (566)
T COG1165 491 --------------------------------PV---FERLFGTPHGLDFAHLAATYGLEYHRP---QSWDELGEALDQA 532 (566)
T ss_pred --------------------------------ch---HHHhcCCCCCCCHHHHHHHhCcccccc---CcHHHHHHHHhhh
Confidence 00 011111122234556678889887644 6899999999877
Q ss_pred HcCCCCCcEEEEEEecCCC
Q 004227 414 KEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 414 ~~~~~~~P~lI~v~T~KG~ 432 (767)
-. ..+-++|+++|.+-.
T Consensus 533 ~~--~~g~~viEvkt~r~~ 549 (566)
T COG1165 533 WR--RSGTTVIEVKTDRSD 549 (566)
T ss_pred cc--CCCcEEEEEecChhH
Confidence 64 356899999997654
No 179
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=95.91 E-value=0.029 Score=70.60 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=48.2
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCc
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS 317 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S 317 (767)
.-+||.+.+.++|+|.+ .++++||+++|||.+--- -.-|+.+|.+.+.|++++|-+|....
T Consensus 480 ~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHS-G~~al~~AV~~~~nit~~IL~N~~vA 540 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHS-GLLAIRAAVAAGVNITYKILYNDAVA 540 (1165)
T ss_pred eeccCCcchhhceeccc----cCCCcEEEEeccccchhc-CHHHHHHHHhcCCCeEEEEEeCCccc
Confidence 35677788888888876 245789999999998632 23578999999999999999998543
No 180
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.74 E-value=0.35 Score=47.79 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=67.9
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhh-cCCCCEEEEeecCCccCCCCCCCCCh--hHHHHhhcC
Q 004227 513 GIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVD-LQKLPVRFAMDRAGLVGADGPTHCGA--FDVTFMSCL 589 (767)
Q Consensus 513 GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a-~~~lpViiv~~~~Gl~G~dG~TH~~~--~Dla~lr~i 589 (767)
..+|..++++|+|..+.|.+|.+.+-.+.+..+..-+. ++. ..++||+++....|-.|.+-+.|... ..-..+..+
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l~-~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~ 118 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINALA-SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTL 118 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHHH-HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHc
Confidence 57899999999999999998888875554445555543 345 67999999986666434332222111 111111221
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCC
Q 004227 590 PNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (767)
Q Consensus 590 Pg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~ 625 (767)
++......+++++ ..+..|++ ..++|++|.+++.
T Consensus 119 -~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 119 -GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred -CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2234555566677 66666664 2458999988763
No 181
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.26 E-value=0.076 Score=66.94 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=46.7
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCc
Q 004227 253 GHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVS 317 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S 317 (767)
-+||.+.+.++|++-+. ++.+||+++|||.+.-- -.-|+.+|.+.+.|++++|-+|....
T Consensus 495 ~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHS-G~~alr~AV~~~~nit~kIL~N~avA 554 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHS-GLLAIRQAIAAGVNITYKILYNDAVA 554 (1186)
T ss_pred eccCcchhhheeecccC----CCCCEEEEeccccchhc-CHHHHHHHHhcCCCEEEEEEeCcchh
Confidence 45677777788887652 35789999999998632 23578999999999999999998543
No 182
>PRK07586 hypothetical protein; Validated
Probab=94.54 E-value=4.3 Score=47.46 Aligned_cols=202 Identities=13% Similarity=0.066 Sum_probs=109.5
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ ..|++++.+|.|.|.. |.-.+|. ++.+.+..+.--+ ..+...+.||+++..........-..||..+...+
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 118 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANL-HNARRARTPIVNIVGDHATYHRKYDAPLTSDIEAL 118 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHH-HHHHhcCCCEEEEecCCchhccCCCcccccchhhh
Confidence 66665 8999999999999986 5444343 4777766665544 34567899999886332211111123555555556
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCCCCccc-ccCCCCCC-CC-cc-----cCce-eEeec-
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGNGIGA-VLPPNNKG-TP-LE-----IGKG-RILME- 651 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~~~~~~-~~p~~~~~-~~-~~-----igk~-~vl~e- 651 (767)
++.+--+ .+...++.++..+++.|++. ..+|++|-+|..-.... +.+..... .. .. +.+. ..|.+
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~A 197 (514)
T PRK07586 119 ARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVEAAAAALRSG 197 (514)
T ss_pred hccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 6654322 45566777777777766652 35899999997532111 11100000 00 00 0000 12223
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhc-CCCcEEEEE-------cccCCC-----CcHHHHHHHhccCCEEEEEcC
Q 004227 652 GDRVAILGYGSIVQQCVLAANMLKS-QDISVTVAD-------ARFCKP-----LDTDLIRQLANEHEILITVEE 712 (767)
Q Consensus 652 G~dvtIva~Gs~v~~al~Aa~~L~~-~GI~v~VId-------l~slkP-----lD~e~i~~~~~~~~~vVvvEe 712 (767)
.+-++|++.|.....+.++..+|.+ .|+.+-.-. -+-+-| .-.+...+.+++.++|+++--
T Consensus 198 ~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~ 271 (514)
T PRK07586 198 EPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGA 271 (514)
T ss_pred CCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECC
Confidence 2467777777765666666666644 376652211 111111 112333456677788877763
No 183
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=94.50 E-value=1.4 Score=43.78 Aligned_cols=115 Identities=10% Similarity=-0.063 Sum_probs=76.0
Q ss_pred cEEeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~rP~~~--tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++. .-.|+++..+|.|.|..--+|-++ +..+.+..+.--+ ..+...+.||+++.........+...+|..+...+
T Consensus 40 ~~v~-~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~ 117 (164)
T cd07039 40 EFIQ-VRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGL-YDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLAL 117 (164)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCcccccCCCCCcccCHHHH
Confidence 5554 489999999999999974344433 3566665555444 34466899999986332221111224776667777
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~ 625 (767)
++.+-.+ ...+.++.++...++.|++. ..+|++|-+|..
T Consensus 118 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 118 FKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 7876554 56667888888888777753 458999988764
No 184
>PRK07524 hypothetical protein; Provisional
Probab=94.40 E-value=1.4 Score=51.84 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=76.4
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCC-CCCCCChhH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGAFD 582 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~d-G~TH~~~~D 582 (767)
|++.+ -.|++++.+|-|.|.. |.-.+|. +..+.+..+.--+ ..+...+.||+++...... .+.+ +..|+..+.
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~ 118 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAM-GQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQ 118 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCChhhcCCCCccccccccH
Confidence 66665 8999999999999986 5433443 4666665665554 4556789999988643322 2322 344554456
Q ss_pred HHHhhcCCCcEEEecCCHHHHHHHHHHHHh----hCCCCEEEEecCC
Q 004227 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (767)
Q Consensus 583 la~lr~iPg~~V~~Psd~~E~~~~l~~A~~----~~~~P~~irl~r~ 625 (767)
..+++.+-- -.+...++.++...+..|++ ...+|++|-+|+.
T Consensus 119 ~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 119 RAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 667776543 25666777788777777775 2357999999875
No 185
>PRK07064 hypothetical protein; Provisional
Probab=94.31 E-value=3.1 Score=49.07 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=75.9
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCC-CCCCCChhH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGAFD 582 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~d-G~TH~~~~D 582 (767)
|++.+ ..|++++.+|.|+|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ +..|+..+.
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~ 120 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGAL-VEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQ 120 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCcccccCCCcccccccCH
Confidence 55554 8999999999999986 5434433 4677665565554 3456789999988643221 2322 234555566
Q ss_pred HHHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 583 la~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
..+++.+-.. .+...++.++..++..|++. ..+|++|-+|..
T Consensus 121 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 121 LTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred HHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 7777766543 45556777777777776652 368999999864
No 186
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.02 E-value=0.97 Score=44.93 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=69.1
Q ss_pred cEEeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~rP~~~--tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ -.|++++.+|-|.+..--+|-+. +..+.+..+.--+ ..+...+.||+++.........+..++|..++..+
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l 114 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAV-VEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGL 114 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHH-HHHHhcCCCEEEEECCCCHHhcCCCCCcccchhhh
Confidence 55554 89999999999999974444443 3667665555544 34567899999987443322222334777776677
Q ss_pred hhcCCCcEEEecCCHHH------HHHHHHHHHh----hCCCCEEEEec
Q 004227 586 MSCLPNMVVMAPSDEAE------LMHMVATAAV----IDDRPSCFRFP 623 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E------~~~~l~~A~~----~~~~P~~irl~ 623 (767)
++.+-.+ .....++.+ +..+++.|+. -..+|++|-+|
T Consensus 115 ~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 115 FGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 7765432 233334343 4455555544 34578888664
No 187
>PRK05858 hypothetical protein; Provisional
Probab=93.92 E-value=1.9 Score=50.94 Aligned_cols=117 Identities=18% Similarity=0.117 Sum_probs=77.9
Q ss_pred CCcEEeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHH
Q 004227 506 PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDV 583 (767)
Q Consensus 506 P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~--tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dl 583 (767)
.=|++.+ ..|++++.+|.|.|...-+|-++ +..+.+..+.--+ ..+...+.||+++.......-.+...+|..+..
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~ 119 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAM-AAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHV 119 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCCCCCcccchh
Confidence 3567765 89999999999999984444443 3566665555554 455678999998864333211122346666666
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
.+++.+-.. .....++.++...+..|++. ..+|++|.+|+.
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 120 PFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 677766543 45566788887777777753 357999999865
No 188
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=93.88 E-value=0.18 Score=64.56 Aligned_cols=114 Identities=22% Similarity=0.330 Sum_probs=77.7
Q ss_pred CeEEEEEcCC-cccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHH
Q 004227 276 NNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAK 354 (767)
Q Consensus 276 ~~Vv~viGDG-al~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k 354 (767)
..||++-||| +...|. .++..+...+.|+.+||.||.- ...|..|..++.+.|+..+.-
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~-Y~nTggQ~S~~tp~g~~t~~~----------------- 1011 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEV-YSNTGGQSSKATPTGAIAKFA----------------- 1011 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcc-cccCCCcCCCCCCCcCccccC-----------------
Confidence 4799999999 456554 5788888888999999999983 334555555666665542110
Q ss_pred HHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccC-CCCHHHHHHHHHHhHcCCCCCcEEEEEEec
Q 004227 355 SITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVD-GHNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 355 ~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vD-Ghdi~~l~~al~~a~~~~~~~P~lI~v~T~ 429 (767)
..|.... | .+-..++.++|..|+-.+- |-+..++.+++++|.+ .+||.+|++.+.
T Consensus 1012 ----~~g~~~~----k----------kd~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1012 ----AAGKRTS----K----------KDLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSP 1067 (1165)
T ss_pred ----CCCCCCC----C----------cCHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECC
Confidence 0011000 0 0112346788988877665 5689999999999987 579999999884
No 189
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=93.83 E-value=1.9 Score=50.88 Aligned_cols=115 Identities=15% Similarity=0.052 Sum_probs=77.6
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++.............||..++..+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 115 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL-ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVAL 115 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH-HHHhhcCCCEEEEeCCCcccccccCcccccchhhh
Confidence 66665 6999999999999985 5434433 4777665665554 34567799999986433321112234888888888
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
++.+-.. .....++.++...+..|++. ..+|++|.+|..
T Consensus 116 ~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 116 FRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred hhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 8876543 44556777777777776652 357999999875
No 190
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.82 E-value=0.51 Score=46.85 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=67.6
Q ss_pred hhhhCCCcEEeccc--cHHHHHHHHHHHHhcC-CeeEEeec--hhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCccCCCC
Q 004227 501 FQKRFPDRCFDVGI--AEQHAVTFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADG 574 (767)
Q Consensus 501 f~~~~P~R~~d~GI--aE~~~vg~AaGlA~~G-~rP~~~ty--s~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl~G~dG 574 (767)
+.-..|.+++..+. +=-..+++|.|++++. -++++++. ..|+.. ...+ ..++..++|+++++ +..|+ +...
T Consensus 33 ~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~-~~el-~ta~~~~lpv~ivv~NN~~~-~~~~ 109 (172)
T cd02004 33 LRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFS-GMEL-ETAVRYNLPIVVVVGNNGGW-YQGL 109 (172)
T ss_pred ccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCC-HHHH-HHHHHcCCCEEEEEEECccc-ccch
Confidence 33355788887642 2223555677777765 35666664 445422 2333 45677899977666 44443 1110
Q ss_pred ---------CCCC----ChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 575 ---------PTHC----GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 575 ---------~TH~----~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
..+. ...|..-+..-=|+....-.+..|+..+++.+.. .++|++|-.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 110 DGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 0000 1123222222236667777899999999999976 578988754
No 191
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=93.82 E-value=0.11 Score=50.04 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCC----hhHHHHhhcC
Q 004227 514 IAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG----AFDVTFMSCL 589 (767)
Q Consensus 514 IaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~----~~Dla~lr~i 589 (767)
-+|...+|+++|+.++|.+|..-+-.+.+-.....+-..-...++|..+++.|+|..+++-+.+-+ ..+ ++..
T Consensus 49 tREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~k--iLe~- 125 (172)
T COG4032 49 TREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPK--ILEG- 125 (172)
T ss_pred cchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHH--HHhh-
Confidence 368889999999999999999988777665544333222335789999999999976665544432 222 2332
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecC
Q 004227 590 PNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPR 624 (767)
Q Consensus 590 Pg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r 624 (767)
-++.-+.|-.++|+..++..+.. ...+|+.+.++.
T Consensus 126 ~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 126 LELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred cCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 24557888888887777665543 356798887753
No 192
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=93.52 E-value=0.9 Score=44.76 Aligned_cols=143 Identities=14% Similarity=0.107 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhCCCEEEEeccccCCcChh-hhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEeec--hhHHHhHH
Q 004227 470 YFAESLIKEAETDDKIVAIHAAMGGGTGLN-YFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIY--SSFLQRGY 546 (767)
Q Consensus 470 af~~aL~~~~~~d~~ivvi~aD~~gs~gl~-~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~ty--s~Fl~ra~ 546 (767)
.+.+.|.+.+ . +.+++. |.|. +... .+....|.+|+..|--- ..+..|.|++++--+|++++. ..|+.-.-
T Consensus 3 ~~~~~l~~~l-~-d~~vv~--d~G~-~~~~~~~~~~~~~~~~~~gsmG-~~lp~AiGa~~a~~~~Vv~i~GDG~f~m~~~ 76 (157)
T cd02001 3 AAIAEIIEAS-G-DTPIVS--TTGY-ASRELYDVQDRDGHFYMLGSMG-LAGSIGLGLALGLSRKVIVVDGDGSLLMNPG 76 (157)
T ss_pred HHHHHHHHhC-C-CCEEEe--CCCH-hHHHHHHhhcCCCCEEeecchh-hHHHHHHHHHhcCCCcEEEEECchHHHhccc
Confidence 3445555555 2 344443 3332 2222 22335678888633221 122367777765337777774 44643332
Q ss_pred HHHHHhhhcC-CCCEEEEe-ecCCc--cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 547 DQVVHDVDLQ-KLPVRFAM-DRAGL--VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 547 dQi~~~~a~~-~lpViiv~-~~~Gl--~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
+ +..+... ++|+++++ +..++ .+ .-+++...-|..-++.--|+.-+...++.|+...++.++. .++|++|..
T Consensus 77 e--l~t~~~~~~~~i~~vV~nN~~~g~~~-~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 77 V--LLTAGEFTPLNLILVVLDNRAYGSTG-GQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred H--HHHHHHhcCCCEEEEEEeCccccccC-CcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2 2333444 58987766 55553 22 1122322233333333336666677899999999999987 578988765
No 193
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=93.52 E-value=6 Score=46.85 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=75.9
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~--tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ ..|++++.+|.|.|...-+|-++ ++.+.+..+.--| ..+-..+.||+++.........+-..+|..+...
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~ 124 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGV-HTAFQDSTPMILFVGQVARDFREREAFQEIDYRR 124 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCcccccCHHH
Confidence 356655 88999999999999975444333 4667766665554 3446789999988643322111112356666667
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+-.+ .+...++.++..++..|++. ..+|++|.+|..
T Consensus 125 l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 125 MFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred hhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 77765443 34446788877777777752 357999999864
No 194
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.50 E-value=2.5 Score=50.33 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=76.7
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ -.|++++.+|.|.|.. |.-.+|. +..+.+..+.--+ ..+...+.||+++....+........||..+...+
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l 118 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAI-AAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPM 118 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHH-HHHhhcCCCEEEEeCCCccccCCCCCCcccchhhh
Confidence 56665 8999999999999976 6544443 4677665555544 45567799999986433321112234777666677
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~~ 626 (767)
++.+-.+ .+...++.++...++.|++ ...+|++|-+|+.-
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 119 FQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred hhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 7765432 4555677777777766665 23479999999753
No 195
>PRK08322 acetolactate synthase; Reviewed
Probab=93.50 E-value=2 Score=50.66 Aligned_cols=113 Identities=13% Similarity=0.001 Sum_probs=75.6
Q ss_pred cEEeccccHHHHHHHHHHHHhcCCeeEE-e-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEGVKPFC-A-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~rP~~-~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++.+ ..|++++.+|.|.|..--+|-+ . +..+.+..++--+ ..+...+.||+++...... .+. ..||..+..
T Consensus 40 ~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i-~~A~~~~~Pll~i~g~~~~~~~~~--~~~q~~d~~ 115 (547)
T PRK08322 40 KLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGV-AYAQLGGMPMVAITGQKPIKRSKQ--GSFQIVDVV 115 (547)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEeccccccccCC--CccccccHH
Confidence 55554 8999999999999997434433 3 3666665555554 4556789999988633321 222 236655566
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
.+++.+-.+ .+...++.++..++..|++. ..+|++|-+|..
T Consensus 116 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 116 AMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 677765432 56667788888888777763 357999999875
No 196
>PRK12474 hypothetical protein; Provisional
Probab=93.39 E-value=10 Score=44.45 Aligned_cols=201 Identities=13% Similarity=0.071 Sum_probs=110.6
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ -.|++++.+|-|.|.. |.-.+|. ++.+....+.--+ ..+...+.||+++.............||..+...+
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 122 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANL-HNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGF 122 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHH-HHHhhcCCCEEEEeccCchhhcCCCCccccCHHHh
Confidence 67766 8999999999999986 6444434 4777765555443 34456799999886332211111123455555567
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHh----hCCCCEEEEecCCCCcccccCC--CC-CCCCcc------cCce-eEeec
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRGNGIGAVLPP--NN-KGTPLE------IGKG-RILME 651 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~----~~~~P~~irl~r~~~~~~~~p~--~~-~~~~~~------igk~-~vl~e 651 (767)
++.+-.+ .+...++.++..+++.|++ ...+|++|.+|+.-.. .+++. .. ...... +.+. ..|.+
T Consensus 123 ~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~ 200 (518)
T PRK12474 123 ARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVAW-NEAAYAAQPLRGIGPAPVAAETVERIAALLRN 200 (518)
T ss_pred hhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhhc-ccccCCcCCCCCCCCCCCCHHHHHHHHHHHHc
Confidence 7754432 4567888888888888875 2347999999975321 11110 00 000000 0000 12333
Q ss_pred CC-cEEEEEechhHHHHHHHHHHHhc-CCCcEEEEE-------cccCC-----CCcHHHHHHHhccCCEEEEEcC
Q 004227 652 GD-RVAILGYGSIVQQCVLAANMLKS-QDISVTVAD-------ARFCK-----PLDTDLIRQLANEHEILITVEE 712 (767)
Q Consensus 652 G~-dvtIva~Gs~v~~al~Aa~~L~~-~GI~v~VId-------l~slk-----PlD~e~i~~~~~~~~~vVvvEe 712 (767)
.+ -++|++.|..-..+.+++..|.+ .|+.|-.-- -+-+- |+......+.++..++|+++--
T Consensus 201 A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~lG~ 275 (518)
T PRK12474 201 GKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAFLKDVEQLVLVGA 275 (518)
T ss_pred CCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccchHHHHHHHhhCCEEEEECC
Confidence 33 45666566544455555555543 477652210 11121 3333344556677788877763
No 197
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=93.22 E-value=0.97 Score=53.91 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=77.5
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..+..-+ ..+-..+.||+++.........+...+|..+...
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~ 121 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV-ATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMP 121 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccCCCCCCcccchhh
Confidence 356655 8999999999999986 6544444 3666665555444 3445679999998743332111122467676667
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~~ 626 (767)
+++.+-.. .+...++.++...++.|++ ...+|++|-+|+..
T Consensus 122 l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 122 MFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred hhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 77765433 5666778777777777764 24689999999753
No 198
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=92.30 E-value=3.3 Score=40.98 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=70.8
Q ss_pred cEEeccccHHHHHHHHHHHHhcCCeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCC-----C
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTH-----C 578 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH-----~ 578 (767)
|++ ....|++++.+|.|.+..- +|-+++ ..+.+..+..-+. .+...+.||+++...... .+.....| +
T Consensus 37 ~~i-~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~-~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 37 RWV-GNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA-GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred eEE-eeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH-HHHHcCCCEEEEecCCCccccccccceeeccccc
Confidence 444 4589999999999999986 454443 5566666666553 446779999998643221 12212223 2
Q ss_pred Chh-HHHHhhcCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecC
Q 004227 579 GAF-DVTFMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPR 624 (767)
Q Consensus 579 ~~~-Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r 624 (767)
..+ ...+++.+-.+ .....++.++..+++.|+.. .++|++|-+||
T Consensus 114 ~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 114 DFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred chHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 223 35666655433 34456777777777777652 35799998775
No 199
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=92.00 E-value=5.7 Score=46.71 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=73.4
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeEEe-e-chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccC-CCCCCCCChhHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCA-I-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHCGAFDV 583 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~-t-ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G-~dG~TH~~~~Dl 583 (767)
=|++. ...|++++.+|.|.|...-+|-++ . ..+.+..++.-+ ..+...+.||+++........ ..++.++..+..
T Consensus 49 i~~i~-~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~ 126 (530)
T PRK07092 49 FRYVL-GLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNL-FTAFKNHTPLVITAGQQARSILPFEPFLAAVQAA 126 (530)
T ss_pred CCEEE-EccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHH-HHHhhcCCCEEEEecCCcccccCccchhcccCHH
Confidence 36664 489999999999999964444444 3 444554554444 344667999998864433211 123333334445
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
.+++.+-.+.. ...++.++..++..|++. ..+|++|-+|..
T Consensus 127 ~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 127 ELPKPYVKWSI-EPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred Hhhccccccee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 67777665433 346778877777777763 247999999864
No 200
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.92 E-value=2.4 Score=50.41 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=77.6
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEee-chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCAI-YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~t-ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ -.|++++.+|.|.|.. |...+|.+ +.+.+..+.--+ ..+...+.||+++.............+|..+...+
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGI-ATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGI 121 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHH-HHHhhcCCCEEEEECCCChhccCCCCCceecHHHH
Confidence 56654 8899999999999986 75555554 777765555444 34456799999987443321111123555555667
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~~ 626 (767)
++.+-.. .....+++++..+++.|++. ..+|++|.+|..-
T Consensus 122 ~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 122 SRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred hhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 7765443 45556888888888888763 4589999998753
No 201
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=91.92 E-value=3.2 Score=41.46 Aligned_cols=120 Identities=17% Similarity=0.099 Sum_probs=69.9
Q ss_pred hhhhhCCCcEEeccc-cHH-HHHHHHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCccCC-
Q 004227 500 YFQKRFPDRCFDVGI-AEQ-HAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGA- 572 (767)
Q Consensus 500 ~f~~~~P~R~~d~GI-aE~-~~vg~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl~G~- 572 (767)
.+.-+.|.+++..+. .=. .+++.|.|++++. -++++++ -..|+.-..| + ..+...++|++++. +..++ |.
T Consensus 35 ~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e-l-~t~~~~~lp~~~iv~NN~~~-~~~ 111 (178)
T cd02014 35 HLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD-L-ITAVKYNLPVIVVVFNNSDL-GFI 111 (178)
T ss_pred hcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH-H-HHHHHhCCCcEEEEEECCch-hHH
Confidence 444456788886543 221 2455666766653 3455555 4556644433 3 44677899987766 44442 10
Q ss_pred -------CCC-CCC--ChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 573 -------DGP-THC--GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 573 -------dG~-TH~--~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
.++ .+. ...|+.-+..--|+..+...++.|+...++.+++ .++|++|...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~-~~~p~liev~ 171 (178)
T cd02014 112 KWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA-ADGPVVIDVV 171 (178)
T ss_pred HHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 011 111 1124333333237888888999999999999976 5789887653
No 202
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.07 E-value=3.4 Score=49.17 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=77.1
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCee-EEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKP-FCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP-~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ -.|++++.+|.|+|...-+| +|. ++.+.+..+..-+ ..+...+.||+++.........+-..+|..+...
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI-ATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVG 120 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 356655 89999999999999864343 333 4677766665554 4456789999998643332111112367666667
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+-.+ .....++.++..+++.|+.. ..+|++|.+|..
T Consensus 121 l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 121 ISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 77766543 45566777777777777653 358999999875
No 203
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=91.06 E-value=3 Score=41.62 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=64.9
Q ss_pred hCCCcEE-eccccHH-HHHHHHHHHHhcCCeeEEeec--hhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCccCCC--CCC
Q 004227 504 RFPDRCF-DVGIAEQ-HAVTFAAGLASEGVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGAD--GPT 576 (767)
Q Consensus 504 ~~P~R~~-d~GIaE~-~~vg~AaGlA~~G~rP~~~ty--s~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl~G~d--G~T 576 (767)
..|.+++ +.|..-. ..++.|.|++++--+|++++. ..|+.-.-| +..+...++|++++. ...++ |.- ...
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~e--L~ta~~~~l~v~ivVlNN~~~-g~~~~~~~ 115 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLNG--LLLGKQEPLNLTIVVINNNGG-GIFSLLPQ 115 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHHH--HHhccccCCCeEEEEEECCCC-chheeccC
Confidence 4577887 4443322 345677777765456666664 556543322 234566789977766 44443 210 000
Q ss_pred ---------CC---ChhHH-HHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 577 ---------HC---GAFDV-TFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 577 ---------H~---~~~Dl-a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
.. ..-|. .+.+.+ |+.-....++.|+...++.+++ .++|.+|-.
T Consensus 116 ~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 116 ASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred CcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 01122 222222 5666777899999999999986 578988754
No 204
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.06 E-value=3.3 Score=49.24 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=76.6
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ ..|++++.+|.|.|.. |...+|. ++.+.+..+..-+ ..+...+.||+++.........+...+|..+...
T Consensus 49 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 126 (566)
T PRK07282 49 IRHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGI-ADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVG 126 (566)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecccccccCCCCCccccChhc
Confidence 377766 8999999999999986 6444444 4777766665554 3445679999998744332111122455555556
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+-.+ .....++.++..++..|++. ..+|++|.+|..
T Consensus 127 ~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 127 ITMPITKY-NYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred hhcCCCce-eEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 66665443 34455777777777777763 358999999875
No 205
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=90.83 E-value=3.5 Score=48.86 Aligned_cols=116 Identities=17% Similarity=0.109 Sum_probs=76.3
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeE-Ee-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPF-CA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~-~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++. ...|++++.+|.|+|..--+|- |. ++.+.+..++--+ ..+...+.||+++.........+-..+|..+...
T Consensus 52 i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 129 (564)
T PRK08155 52 IRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAI-ADARLDSIPLVCITGQVPASMIGTDAFQEVDTYG 129 (564)
T ss_pred ceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeccCCcccccCCCccccchhh
Confidence 46776 4999999999999999744543 33 4677665565554 3456789999988643332111122356655556
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+--. ...-.++.++..++..|++. ..+|++|-+|..
T Consensus 130 ~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 130 ISIPITKH-NYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhccceE-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 66665443 33445788888888877763 258999999864
No 206
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=90.69 E-value=2.6 Score=42.45 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=67.5
Q ss_pred hhhCCCcEEeccc-c-HHHHHHHHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCcc-----
Q 004227 502 QKRFPDRCFDVGI-A-EQHAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV----- 570 (767)
Q Consensus 502 ~~~~P~R~~d~GI-a-E~~~vg~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl~----- 570 (767)
.-..|.+|+..+- . =-..+..|.|++++. -++++++ -..|+...-| +..++..++|+++++ +..++.
T Consensus 36 ~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~~e--L~ta~~~~lpi~ivV~nN~~~~~~~~~ 113 (186)
T cd02015 36 RFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE--LATAAQYNLPVKIVILNNGSLGMVRQW 113 (186)
T ss_pred ccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccHHH--HHHHHHhCCCeEEEEEECCccHHHHHH
Confidence 3345788886532 1 123556677777763 3555555 3556643333 345677889987766 444431
Q ss_pred -----CCC-C-CCCCChhHHH-HhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 571 -----GAD-G-PTHCGAFDVT-FMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 571 -----G~d-G-~TH~~~~Dla-~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
+.. . .......|.. +.+.+ |+.-+.-.+..|+...++.+++ .++|++|-..
T Consensus 114 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 172 (186)
T cd02015 114 QELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDVL 172 (186)
T ss_pred HHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 000 0 1111112333 33333 6666777889999999999976 6789888553
No 207
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.63 E-value=3.9 Score=48.83 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=75.0
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ ..|++++.+|-|.|.. |...+|. ++.+.+..+.--+ ..+...+.||+++.........+-..+|..+...
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 137 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI-ATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVG 137 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCcccccHHH
Confidence 467766 8999999999999987 5444433 4677666665554 4556789999998744332111122355555556
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+-.+ .....++.++..++..|++. ..+|++|-+|..
T Consensus 138 l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 138 ITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 66665443 34455666666666666642 358999999875
No 208
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=90.54 E-value=4.7 Score=47.70 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=76.6
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ -.|++++.+|.|.|.. |.-.+|. ++.+.+..+..-+ ..+...+.||+++.............+|..+...+
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 118 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI-ATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGI 118 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCCcccChhhh
Confidence 66665 8999999999999986 5433333 4777665665554 34567899999986433221112234666666667
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
++.+-.+ .....++.++..++..|+.. ..+|++|.+|..
T Consensus 119 ~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 119 TMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred hcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 7765443 34456788888888888753 357999999875
No 209
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.17 E-value=6.3 Score=46.79 Aligned_cols=148 Identities=18% Similarity=0.158 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCEEEEeccccCCcCh---hhhhhhCCCcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHH
Q 004227 472 AESLIKEAETDDKIVAIHAAMGGGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGY 546 (767)
Q Consensus 472 ~~aL~~~~~~d~~ivvi~aD~~gs~gl---~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~ 546 (767)
++.|.+.+++..==.+++ ..|+.-+ +.+.+. .=|++.+ .-||.++.+|.|.|.. |.-.+|. +..+....+.
T Consensus 5 a~~lv~~L~~~GV~~VFG--iPG~~i~~~~dal~~~-~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~ 80 (550)
T COG0028 5 AEALVEALEANGVDTVFG--IPGGSILPLYDALYDS-GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLL 80 (550)
T ss_pred HHHHHHHHHHcCCcEEEe--CCCccHHHHHHHHHhC-CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence 345556665544212222 2233322 344444 4577766 8999999999999996 6555554 3566665554
Q ss_pred HHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEe
Q 004227 547 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRF 622 (767)
Q Consensus 547 dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl 622 (767)
.-| .++...+.|++++.........+--.+|..+...+++.+-.. .+...+++|+-..++.|++. ..+|++|-+
T Consensus 81 tgl-a~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 81 TGL-ADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred HHH-HHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 443 455667899998864322111122346666555666654322 57788889999999988873 346999999
Q ss_pred cCC
Q 004227 623 PRG 625 (767)
Q Consensus 623 ~r~ 625 (767)
|+.
T Consensus 159 P~D 161 (550)
T COG0028 159 PKD 161 (550)
T ss_pred Chh
Confidence 875
No 210
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=90.07 E-value=5.8 Score=47.26 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=73.8
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCe-eEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVK-PFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~r-P~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ -.|++++.+|-|.|...-+ .+|. ++.+.+..+.--+ ..+-..+.||+++.........+..++|.++...
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~ 116 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL-YDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENP 116 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCcceechhh
Confidence 456665 8899999999999986444 3433 4677666665554 3445679999998644332223345577776667
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~ 625 (767)
+++.+--+ .....++.++..++..|++ ...+|++|-+|..
T Consensus 117 ~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 117 IYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred hhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 77754332 2344455555555544443 2668999999975
No 211
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.96 E-value=6.3 Score=46.76 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=77.9
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
+++.+ ..|++++.+|.|.|.. |.-.+|. ++.+.+..+..-+ ..+...+.||+++..........-..+|..+...+
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 120 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGL-ATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGI 120 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhhh
Confidence 66655 8999999999999985 5444444 4677665665554 44567899999986433321111224666666677
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
++.+-.. .....++.++..+++.|++. ..+|++|-+|..
T Consensus 121 ~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 121 SRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 7765433 45668889999999888863 336999999864
No 212
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=89.95 E-value=4.7 Score=47.70 Aligned_cols=116 Identities=9% Similarity=-0.071 Sum_probs=74.8
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~--tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++. ...|++++.+|.|+|..--+|-++ +..+.+..++--+ ..+...+.||+++............++|..+...
T Consensus 40 i~~v~-~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 117 (549)
T PRK06457 40 VKYVQ-VRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGL-YDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTK 117 (549)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 34554 489999999999999975445444 3666665555554 3456789999988643222111122456666667
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl~r~ 625 (767)
+++.+--. .....+++++..+++.|++. ..+|++|.+|..
T Consensus 118 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 118 LFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 77765443 45566667777777666652 368999999865
No 213
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=89.95 E-value=5.6 Score=39.89 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=68.2
Q ss_pred hhhCCCcEEeccc--cHHHHHHHHHHHHhc-CCeeEEeec--hhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCc--cC--
Q 004227 502 QKRFPDRCFDVGI--AEQHAVTFAAGLASE-GVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG-- 571 (767)
Q Consensus 502 ~~~~P~R~~d~GI--aE~~~vg~AaGlA~~-G~rP~~~ty--s~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl--~G-- 571 (767)
.-..|.+|+..+- +=-..+..|.|++++ .-++++++. ..|+... |-+..+...++|+++++ ...|+ ..
T Consensus 34 ~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~--~eL~ta~~~~l~vi~vV~NN~~~g~~~~~ 111 (177)
T cd02010 34 RTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNS--QELETAVRLKIPLVVLIWNDNGYGLIKWK 111 (177)
T ss_pred CcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHH--HHHHHHHHHCCCeEEEEEECCcchHHHHH
Confidence 3345788886532 112244466777765 345666663 4565333 22344567799987775 44443 11
Q ss_pred ---CCC-CCCC--ChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 572 ---ADG-PTHC--GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 572 ---~dG-~TH~--~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
..+ ..+. ..-|..-++.-=|..-+...++.|+...++++++ .++|.+|...
T Consensus 112 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 112 QEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HHHhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 001 1111 1123333333236777788999999999999986 5789888654
No 214
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=89.85 E-value=5.3 Score=47.50 Aligned_cols=117 Identities=14% Similarity=0.047 Sum_probs=75.4
Q ss_pred CCcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHH
Q 004227 506 PDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDV 583 (767)
Q Consensus 506 P~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dl 583 (767)
+=+++.+ ..|++++.+|.|+|.. |.-.+|. ++.+.+..++--+ ..+...+.||+++.........+-..+|..+..
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~ 130 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGL-ADAMIDSLPLVVFTGQVATSVIGSDAFQEADIM 130 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCCCccccchh
Confidence 4578866 9999999999999987 5433433 4666665555544 344567999998864332211111224555666
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
.+++.+-.+ .+...++.++..+++.|+.. ..+|++|.+|..
T Consensus 131 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 131 GITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred hhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 677765443 34556677777777777653 258999999864
No 215
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=89.72 E-value=7.2 Score=41.11 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=52.6
Q ss_pred CeeEEeec--hhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCC-----------------------ChhHHH-
Q 004227 531 VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC-----------------------GAFDVT- 584 (767)
Q Consensus 531 ~rP~~~ty--s~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~-----------------------~~~Dla- 584 (767)
-+|++++. ..|++..+..+ ..+...++|+++++-..+..|.-|..++ ..-|+.
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL-~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 158 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQAL-SGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPL 158 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHH-HHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHH
Confidence 57788774 44444555555 4567889998887744332221111111 101222
Q ss_pred HhhcC--CCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 585 FMSCL--PNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 585 ~lr~i--Pg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
+.+.+ +.+..+...++.|+..+++.+++ .++|++|-.
T Consensus 159 iA~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 159 IMAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22222 23334578999999999999987 578988754
No 216
>PRK08611 pyruvate oxidase; Provisional
Probab=89.70 E-value=6.4 Score=46.88 Aligned_cols=116 Identities=13% Similarity=0.001 Sum_probs=75.0
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++. ...|++++.+|.|+|.. |.-.+|. ++.+.+..+.--+ ..+...+.||+++.........+-..+|..+...
T Consensus 44 i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-a~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~ 121 (576)
T PRK08611 44 IKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGL-YDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEK 121 (576)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccCHHH
Confidence 36665 48899999999999986 5433333 3677666665554 3456789999998744332111122355555667
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~ 625 (767)
+++.+--+ .....++.++..++..|++ ...+|++|-+|..
T Consensus 122 l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 122 MFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred Hhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 77766443 3456677777777766654 2358999999875
No 217
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=89.58 E-value=8.7 Score=45.92 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=75.6
Q ss_pred cEEeccccHHHHHHHHHHHHhcC-CeeEEe--echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEG-VKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G-~rP~~~--tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
|++.+ -.|++++.+|-|.|... -+|-++ ++.+.+..+.--+ ..+...+.||+++.............+|..+...
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~ 120 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIAA 120 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccCHHH
Confidence 56554 77999999999999863 444433 4666665555444 3446779999998643332111123366665667
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~~ 626 (767)
+++.+--+ .+...++.++..+++.|++. ..+|++|-+|+.-
T Consensus 121 ~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 121 IAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 77765433 44556788888888888762 3469999999753
No 218
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=89.34 E-value=6.9 Score=42.61 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccH---HHHHHHHHHHHhcC-CeeEEee--chhH
Q 004227 468 TQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAE---QHAVTFAAGLASEG-VKPFCAI--YSSF 541 (767)
Q Consensus 468 ~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE---~~~vg~AaGlA~~G-~rP~~~t--ys~F 541 (767)
..++.++|.++.-..++.+++ .|.|-+. +.| ++++..--- -.++.+|.|++++. -++++++ -.+|
T Consensus 13 ~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f 83 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVVVV-SGIGCSA-------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCCccc-------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHH
Confidence 355667776654333455444 4666443 123 555543221 23566788877764 4566666 3445
Q ss_pred HHhHHHHHHHhhhcCCCCEEEEe-ecCC--ccC-CCCCCC----------C----ChhHHHH---hhcCCCcE-EEecCC
Q 004227 542 LQRGYDQVVHDVDLQKLPVRFAM-DRAG--LVG-ADGPTH----------C----GAFDVTF---MSCLPNMV-VMAPSD 599 (767)
Q Consensus 542 l~ra~dQi~~~~a~~~lpViiv~-~~~G--l~G-~dG~TH----------~----~~~Dla~---lr~iPg~~-V~~Psd 599 (767)
+.-....+ ..++..++|+++++ +..+ +++ ..-++- . ...|+.+ .... +.. .....+
T Consensus 84 ~~mg~~eL-~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~-g~va~~~~~~ 161 (287)
T TIGR02177 84 YGIGGNHF-VAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGY-TFVARGFSGD 161 (287)
T ss_pred HhccHHHH-HHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCC-CeEEEEecCC
Confidence 43444444 34577899987776 3333 222 111110 0 0012222 2222 222 233689
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEe
Q 004227 600 EAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 600 ~~E~~~~l~~A~~~~~~P~~irl 622 (767)
+.|+..+++.|++ .++|++|-.
T Consensus 162 ~~eL~~ai~~Al~-~~GpslIeV 183 (287)
T TIGR02177 162 VAHLKEIIKEAIN-HKGYALVDI 183 (287)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999987 678988754
No 219
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.30 E-value=8.3 Score=46.15 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=89.0
Q ss_pred HHHHHHHHHhCC--CEEEEeccccCCcCh---hhhhhhCCCcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHh
Q 004227 472 AESLIKEAETDD--KIVAIHAAMGGGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQR 544 (767)
Q Consensus 472 ~~aL~~~~~~d~--~ivvi~aD~~gs~gl---~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~r 544 (767)
++.|.+.+++.. .++.+ .|+.-+ +.+.+.--=|++.+ ..|++++.+|-|.|.. |.-.+|. ++.+.+..
T Consensus 14 a~~l~~~L~~~GV~~vFGv----pG~~~~~l~dal~~~~~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 14 AEMVVQALKDQGVEHIFGY----PGGAVLPIYDEIFQQDDIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred HHHHHHHHHHCCCCEEEEc----cCcchHHHHHHHhhcCCCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 556666666543 33333 233322 23322212467776 9999999999999975 6544444 46776655
Q ss_pred HHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEE
Q 004227 545 GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCF 620 (767)
Q Consensus 545 a~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~i 620 (767)
+.--| ..+...+.||+++..........-..+|..+...+++.+--+ .+...++.++..++..|++. ..+|++|
T Consensus 89 ~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l 166 (595)
T PRK09107 89 AVTPL-QDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVV 166 (595)
T ss_pred HHHHH-HHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 55544 344567999998864333211112346666555666654332 34566778888888777763 3589999
Q ss_pred EecCCC
Q 004227 621 RFPRGN 626 (767)
Q Consensus 621 rl~r~~ 626 (767)
.+|+.-
T Consensus 167 ~iP~Dv 172 (595)
T PRK09107 167 DIPKDV 172 (595)
T ss_pred ecCCCh
Confidence 998753
No 220
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=89.15 E-value=9.5 Score=45.07 Aligned_cols=116 Identities=19% Similarity=0.120 Sum_probs=68.8
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCC-CCC--h
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG--A 580 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~T-H~~--~ 580 (767)
|++. .-.|++++-+|-|.|.. |...+|. ++.+....+..-+ ..+...++||+++...... .+.+... ||. .
T Consensus 40 ~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 117 (535)
T TIGR03394 40 PLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAI-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTL 117 (535)
T ss_pred eEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHH-HHHhhcCCCEEEEECCCCcccccCCceeEeeccch
Confidence 6666 48999999999999997 5444444 4667665555544 3445689999998633221 1322222 443 2
Q ss_pred h-HHHHhhcCCCc--EEEecCC-HHHHHHHHHHHHhhCCCCEEEEecCCC
Q 004227 581 F-DVTFMSCLPNM--VVMAPSD-EAELMHMVATAAVIDDRPSCFRFPRGN 626 (767)
Q Consensus 581 ~-Dla~lr~iPg~--~V~~Psd-~~E~~~~l~~A~~~~~~P~~irl~r~~ 626 (767)
. ...+++.+-.+ .|..|.+ +..+..+++.|.. ..+|++|-+|+.-
T Consensus 118 ~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv 166 (535)
T TIGR03394 118 DSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRDM 166 (535)
T ss_pred HHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechhh
Confidence 2 23556654322 2333443 2234445555544 5689999999753
No 221
>PRK11269 glyoxylate carboligase; Provisional
Probab=88.95 E-value=6.6 Score=46.89 Aligned_cols=116 Identities=9% Similarity=0.004 Sum_probs=76.4
Q ss_pred CcEEeccccHHHHHHHHHHHHhcC-CeeE-E-eechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEG-VKPF-C-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDV 583 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G-~rP~-~-~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dl 583 (767)
=|++.+ ..|++++.+|.|+|... -+|- | .++.+.+..+.--+ ..+...+.||+++.........+-..+|..+..
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~ 120 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIE 120 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccChh
Confidence 367776 89999999999999864 3333 3 34677665554443 345678999998864333211112236666666
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
.+++.+--+ .....++.++..+++.|++. ..+|++|-+|..
T Consensus 121 ~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 121 SIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred hHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 777765333 34567788888888887763 247999999865
No 222
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.94 E-value=5.7 Score=47.31 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=76.9
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
-|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..+.--+ ..+-..+.||+++.........+-..+|..+...
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 130 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGL-ADAYMDSIPLVVITGQVATPLIGKDGFQEADVVG 130 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCcCEEEEecCCCcccccCCCCcccchhh
Confidence 467665 8999999999999986 6444443 4777776665554 3445679999988643332111112355555556
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+-.+ .+...+++++..+++.|++. ..+|++|.+|..
T Consensus 131 l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 131 ITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred hhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence 66665433 45567888888888888763 358999999875
No 223
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=88.82 E-value=1.5 Score=44.94 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=48.0
Q ss_pred CcEEEEEechhH-HHHHHHHHHHhcC--CCcEEEEEcc---cCCC-------CcHHHHHHHhccCCEEEEEcCCCCCCHH
Q 004227 653 DRVAILGYGSIV-QQCVLAANMLKSQ--DISVTVADAR---FCKP-------LDTDLIRQLANEHEILITVEEGSVGGFG 719 (767)
Q Consensus 653 ~dvtIva~Gs~v-~~al~Aa~~L~~~--GI~v~VIdl~---slkP-------lD~e~i~~~~~~~~~vVvvEe~~~GGlg 719 (767)
.||+|.|+|... .++++|++.|+++ +++++||++- .|.| |+.+...++..+.+.||+.= -|+.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFaf----HGYp 110 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFAF----HGYP 110 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEEE----SSEH
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEEc----CCCH
Confidence 599999999977 9999999999998 9999887754 3333 67778888877766666432 3556
Q ss_pred HHHHHHHHh
Q 004227 720 SHVCHFLTL 728 (767)
Q Consensus 720 s~I~~~l~~ 728 (767)
..|-..+..
T Consensus 111 ~~i~~L~~~ 119 (203)
T PF09363_consen 111 WLIHRLLFG 119 (203)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHhcC
Confidence 666555543
No 224
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=88.81 E-value=7.8 Score=46.24 Aligned_cols=115 Identities=13% Similarity=0.043 Sum_probs=75.6
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ ..|++++.+|.|.|.. |.-.++. ++.+.+..++--+ ..+...+.||+++.........+...+|..+...+
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 117 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGI-ATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGI 117 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccHhhH
Confidence 66665 7999999999999986 5433333 4667665555554 45567899999886433321112234666666667
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
++.+-.. ...-.+++++...++.|+.. ..+|++|.+|..
T Consensus 118 ~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 118 FMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred Hhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 7765443 34446677777777777763 357999999865
No 225
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.75 E-value=7 Score=42.40 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcC-CeeEEeec--hhHH
Q 004227 466 TYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIY--SSFL 542 (767)
Q Consensus 466 s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G-~rP~~~ty--s~Fl 542 (767)
....++.++|.++....++.+++ .|.|-+..+..+.+. ..++... ..++.+|.|++++- -++++++. .+++
T Consensus 17 ~il~al~~al~~l~~~~~~~ivv-sdiGc~~~~~~~~~~---~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~f 90 (279)
T PRK11866 17 GILEALRKALAELGIPPENVVVV-SGIGCSSNLPEFLNT---YGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDGY 90 (279)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEE-ECCchhhhhhhhccC---CCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHHH
Confidence 34456666665553333454444 465544322222211 1122222 45667788887763 35566653 4334
Q ss_pred HhHHHHHHHhhhcCCCCEEEEe-ecCCc--cC-CCCCC----------CC-------ChhHHHHhhcCCCcEEEecCCHH
Q 004227 543 QRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGPT----------HC-------GAFDVTFMSCLPNMVVMAPSDEA 601 (767)
Q Consensus 543 ~ra~dQi~~~~a~~~lpViiv~-~~~Gl--~G-~dG~T----------H~-------~~~Dla~lr~iPg~~V~~Psd~~ 601 (767)
.-....+. .++..++|+++++ +...+ ++ ..-++ -. ....++.....+.+....+.++.
T Consensus 91 ~ig~~eL~-tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~ 169 (279)
T PRK11866 91 GIGLGHLP-HAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVK 169 (279)
T ss_pred HccHHHHH-HHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHH
Confidence 45555554 4577899977776 43332 32 11111 00 11122222233444566679999
Q ss_pred HHHHHHHHHHhhCCCCEEEEe
Q 004227 602 ELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 602 E~~~~l~~A~~~~~~P~~irl 622 (767)
|+...++.|++ .++|++|-.
T Consensus 170 ~l~~~l~~Al~-~~Gps~I~v 189 (279)
T PRK11866 170 HLKEIIKEAIK-HKGFSFIDV 189 (279)
T ss_pred HHHHHHHHHHh-CCCCEEEEE
Confidence 99999999987 678988755
No 226
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=88.53 E-value=6.8 Score=39.54 Aligned_cols=144 Identities=17% Similarity=0.230 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEeccccCCcChhhhh-hhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEeec--hhHHHhH
Q 004227 469 QYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQ-KRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIY--SSFLQRG 545 (767)
Q Consensus 469 ~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~-~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~ty--s~Fl~ra 545 (767)
+++.++|.+.+. +.+++. |.|... ...+. ...|.+++..|--=. .++.|.|++++--+|++++. ..|+.-.
T Consensus 2 ~~~~~~l~~~l~--d~iiv~--d~G~~~-~~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVVS--NIGVPS-KELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC--CCEEEe--cCCHhH-HHHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEEcchHHHhhh
Confidence 445566666663 344443 444322 12222 235778876432222 34567777765456666664 4555332
Q ss_pred HHHHHHhhhcCC-CCEEEEe-ecCCccCCCC--CCCC-ChhHHHHhhcCCCcEEEe-cCCHHHHHHHHHHHHhhCCCCEE
Q 004227 546 YDQVVHDVDLQK-LPVRFAM-DRAGLVGADG--PTHC-GAFDVTFMSCLPNMVVMA-PSDEAELMHMVATAAVIDDRPSC 619 (767)
Q Consensus 546 ~dQi~~~~a~~~-lpViiv~-~~~Gl~G~dG--~TH~-~~~Dla~lr~iPg~~V~~-Psd~~E~~~~l~~A~~~~~~P~~ 619 (767)
.. +..++..+ +|+++++ +..|+ |.-+ ++.. ..-|..-++.--|+.-.. ..+++|+...++ +++ .++|++
T Consensus 76 -~e-l~ta~~~~~~pv~~vV~NN~~y-g~~~~q~~~~~~~~d~~~lA~a~G~~~~~~v~~~~~l~~al~-a~~-~~~p~l 150 (181)
T TIGR03846 76 -GV-LPTIAAESPKNLILVILDNGAY-GSTGNQPTPASRRTDLELVAKAAGIRNVEKVADEEELRDALK-ALA-MKGPTF 150 (181)
T ss_pred -hH-HHHHHHhCCCCeEEEEEeCCcc-ccccCcCCCCCCCCCHHHHHHHCCCCeEEEeCCHHHHHHHHH-HHc-CCCCEE
Confidence 22 33445566 5877766 44443 2212 1111 112322222222555555 788999999997 765 678988
Q ss_pred EEec
Q 004227 620 FRFP 623 (767)
Q Consensus 620 irl~ 623 (767)
|...
T Consensus 151 i~v~ 154 (181)
T TIGR03846 151 IHVK 154 (181)
T ss_pred EEEE
Confidence 7553
No 227
>PRK08266 hypothetical protein; Provisional
Probab=88.51 E-value=7.8 Score=45.66 Aligned_cols=116 Identities=18% Similarity=0.147 Sum_probs=75.6
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCee-EE-eechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCC-CCCCCChh
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKP-FC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGAF 581 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP-~~-~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~d-G~TH~~~~ 581 (767)
=|++.+ ..|++++.+|.|+|...-+| +| .+..+.+..++.-+ ..+...+.||+++...... .+.+ +.+|+..+
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL-LTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 466665 89999999999999864344 33 34677665665554 4556789999988633221 2222 23444446
Q ss_pred HHHHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 582 DVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 582 Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
...+++.+-.+ .....++.++..+++.|++. ..+|++|-+|..
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 66777766543 45555667777777766652 457999999864
No 228
>PLN02573 pyruvate decarboxylase
Probab=88.43 E-value=7.1 Score=46.61 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=69.6
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCCh---
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA--- 580 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~--- 580 (767)
+++.+ ..|++++.+|-|.|.. | .++|. ++.+....+.--+ ..+...+.||+++...... .+.++..||..
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHH-HHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 45544 8899999999999985 7 66655 4666655554444 3445679999998643322 24444455432
Q ss_pred ---hHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCCC
Q 004227 581 ---FDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN 626 (767)
Q Consensus 581 ---~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~~ 626 (767)
.+..+++.+-.+ .....+++++..+++.|++ ...+|++|-+|+.-
T Consensus 133 ~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 133 DFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred ChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 223455543322 3334455555555555544 24589999998753
No 229
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=88.41 E-value=17 Score=38.27 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=63.3
Q ss_pred CCCcEEeccccHHHHHHHHHHHHh----c-----C-CeeEEeec--hhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCc--
Q 004227 505 FPDRCFDVGIAEQHAVTFAAGLAS----E-----G-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL-- 569 (767)
Q Consensus 505 ~P~R~~d~GIaE~~~vg~AaGlA~----~-----G-~rP~~~ty--s~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl-- 569 (767)
+|.++++..+.-...+|.+..+|+ . - -++++++. ..|+...+..+.+ +...++|+++++ +..++
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~t-a~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSH-SLFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHH-HHHcCCCeEEEEECCccccC
Confidence 456667765544566665444443 2 1 35677764 3344334444433 345789987776 33332
Q ss_pred cC-CC------CC----CCCC----hhHHH-Hhhc--CCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 570 VG-AD------GP----THCG----AFDVT-FMSC--LPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 570 ~G-~d------G~----TH~~----~~Dla-~lr~--iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
.+ .. |. +.+. .-|+. +.++ ++......+.++.|+..+++.++++.++|++|-.
T Consensus 130 ~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 130 TGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 11 00 0000 01222 2233 3333334599999999999999863578988755
No 230
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.31 E-value=8.3 Score=45.81 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=75.4
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ ..|++++.+|.|+|.. |...+|. +..+.+..++--+ ..+...+.||+++..........-..+|..+...+
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i-~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGI-ATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccchhhh
Confidence 66665 8999999999999986 5433333 4666665565554 34567899999886433321111223666656667
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
++.+-.. .....++.++..++..|++. ..+|++|-+|..
T Consensus 122 ~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 122 SRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred hhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 6654332 45566777777777777762 358999999875
No 231
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=88.13 E-value=7.8 Score=46.23 Aligned_cols=116 Identities=12% Similarity=-0.055 Sum_probs=74.0
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ --|++++.+|.|.|...-+|-+++ ..+.+..++--+ ..+...+.||+++.........+-..+|..++..
T Consensus 42 i~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~ 119 (578)
T PRK06546 42 IEWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGL-YDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDR 119 (578)
T ss_pred CeEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCccccChhh
Confidence 356665 789999999999999854454443 456665555444 4556789999998643222111112356666666
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~ 625 (767)
+++.+-.+ .+...++.++..++..|++ ...+|++|-+|..
T Consensus 120 l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 120 LFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred hcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 77754332 4566677777776666655 2458999999864
No 232
>PRK06163 hypothetical protein; Provisional
Probab=87.99 E-value=20 Score=36.98 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=61.9
Q ss_pred hCCCcEEeccccHHHHHHHHHHHHhcC-CeeEEeec--hhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCccCC-CCCC--
Q 004227 504 RFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGA-DGPT-- 576 (767)
Q Consensus 504 ~~P~R~~d~GIaE~~~vg~AaGlA~~G-~rP~~~ty--s~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl~G~-dG~T-- 576 (767)
..|.+++..| +=-..+..|.|++++. -++++++. ..|+.-.-| +...+.+.++|+++++ +..++ |. .+..
T Consensus 48 ~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG~f~m~~~e-L~Ta~~~~~lpi~ivV~NN~~y-g~~~~~~~~ 124 (202)
T PRK06163 48 QRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDGSLLMQLGA-LGTIAALAPKNLTIIVMDNGVY-QITGGQPTL 124 (202)
T ss_pred cCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcchHHHHHHHH-HHHHHHhcCCCeEEEEEcCCch-hhcCCccCC
Confidence 3567777432 1122333566766653 45566664 445533322 2222234467866665 44443 21 1111
Q ss_pred CCChhHHHHhhcCCCcE-EEecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 577 HCGAFDVTFMSCLPNMV-VMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 577 H~~~~Dla~lr~iPg~~-V~~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
+...-|..-++.--|+. -+...+..|+..+++.+++ .++|++|...
T Consensus 125 ~~~~~Df~~lA~a~G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV~ 171 (202)
T PRK06163 125 TSQTVDVVAIARGAGLENSHWAADEAHFEALVDQALS-GPGPSFIAVR 171 (202)
T ss_pred CCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 11112333333223665 5667899999999999986 5789887653
No 233
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=87.98 E-value=9.2 Score=45.91 Aligned_cols=116 Identities=19% Similarity=0.134 Sum_probs=77.0
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=+++.+ ..|++++.+|.|+|.. |.-.+|. +..+.+..+.--+ ..+...+.||+++.........+...+|..+...
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~ 147 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPI-ADANMDSVPVVAITGQVGRGLIGTDAFQEADIVG 147 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcCcccchhh
Confidence 366665 8999999999999986 6444443 4666665555544 4556789999998744332111122356555556
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+-.+ .+...++.++..++..|++. ..+|++|.+|..
T Consensus 148 l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 148 ITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred hhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 66655433 34567888888888888763 357999999875
No 234
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=87.97 E-value=8.6 Score=45.40 Aligned_cols=115 Identities=17% Similarity=0.070 Sum_probs=75.9
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ ..|++++.+|.|.|.. |.-.+|. ++.+.+..++--+ ..+...+.||+++.........+-..+|..+...+
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 117 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGL-ADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGL 117 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhcc
Confidence 56655 8999999999999997 5443433 4667665555554 34567899999987443321111123666666667
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
++.+-... +...++.++..+++.|++. ..+|++|.+|..
T Consensus 118 ~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 118 SLACTKHS-FLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred ccCceeeE-EEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 77665443 3335788888888888763 347999999874
No 235
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=87.89 E-value=9.9 Score=45.20 Aligned_cols=115 Identities=10% Similarity=-0.013 Sum_probs=70.5
Q ss_pred cEEeccccHHHHHHHHHHHHhcCCeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ -.|++++.+|.|.|...-+|-+++ ..+....+..-+ ..+...+.||+++.........+...||...+..+
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l 120 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQEL 120 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhhh
Confidence 55554 699999999999999744554443 556554544444 44567799999886332221111224676666677
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~ 625 (767)
++.+--. .....+++++...++.|++ ...+|++|-+|..
T Consensus 121 ~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~D 162 (574)
T PRK09124 121 FRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGD 162 (574)
T ss_pred cccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 7755333 2335566665555544443 2458999999865
No 236
>PRK08617 acetolactate synthase; Reviewed
Probab=87.86 E-value=3.5 Score=48.68 Aligned_cols=116 Identities=15% Similarity=0.060 Sum_probs=76.7
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCee-EEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKP-FCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP-~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ ..|++++.+|.|.|...-+| +|. ++.+.+..++--+ ..+...+.||+++..........-..||..+...
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl-~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~ 120 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGL-VTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVA 120 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccchhh
Confidence 456665 89999999999999974443 333 4666665555554 3456779999998643222111123477777777
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+--+ .+...++.++..++..|++. ..+|++|-+|..
T Consensus 121 l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 121 LFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 77776443 45556777777777777763 347999999865
No 237
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=87.17 E-value=4.5 Score=48.05 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=74.9
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++.+ ..|++++.+|.|+|.. |.-.+|. ++.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|..+..
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 120 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGL-ITAYWDSSPVIAITGQVPRSVMGKM--AFQEADAM 120 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHH-HHHHhhCCCEEEEecCCCccccCCC--Cccccchh
Confidence 45554 8899999999999986 5444444 4777766665554 4456789999998643332 2322 25555555
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHh----hCCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~----~~~~P~~irl~r~ 625 (767)
.+++.+--. .+...++.++..++..|++ ...+|++|-+|..
T Consensus 121 ~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 121 GVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred hhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 677765444 3444677788777777765 2458999999864
No 238
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=87.00 E-value=5.2 Score=47.61 Aligned_cols=116 Identities=11% Similarity=0.023 Sum_probs=74.7
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~--tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=+++.+ ..|++++.+|.|.|..--+|-++ +..+.+..++--| ..+...+.||+++.........+...+|..+...
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~ 127 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPL-AEALKASVPIVALVQDVNRDQTDRNAFQELDHIA 127 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhh
Confidence 466666 79999999999999863344433 3556655555444 4456789999988643332112223466666667
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+--+ .....+++++...+..|++. ..+|++|-+|..
T Consensus 128 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 128 LFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 77765443 34556667777777666652 357999999865
No 239
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.91 E-value=11 Score=44.93 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=76.0
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..+.--+ ..+...+.||+++.............+|..+...
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI-ATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIG 120 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhH
Confidence 367766 8999999999999986 6544444 4666665555444 3445679999988643332111112355555556
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+-.+ .....++.++...++.|++. ..+|++|.+|..
T Consensus 121 ~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 121 ISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred HhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 66665333 45556788888888877762 347999999875
No 240
>PLN02470 acetolactate synthase
Probab=86.74 E-value=11 Score=44.93 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=76.5
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~-~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++--+ ..+-..+.||+++.........+-..+|..+...
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 129 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGL-ADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 129 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCcEEEEecCCChhhcCCCcCcccchhh
Confidence 467776 8999999999999986 644444 34777776665554 3456679999998633222111112355555556
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+-.+ .+...+++++..+++.|++. ..+|++|-+|..
T Consensus 130 l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 130 VTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 66654332 34456888888888888763 358999999875
No 241
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=86.62 E-value=8.3 Score=38.77 Aligned_cols=142 Identities=19% Similarity=0.221 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEeccccCCcC-hhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEeec--hhHHHhH
Q 004227 469 QYFAESLIKEAETDDKIVAIHAAMGGGTG-LNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIY--SSFLQRG 545 (767)
Q Consensus 469 ~af~~aL~~~~~~d~~ivvi~aD~~gs~g-l~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~ty--s~Fl~ra 545 (767)
+.+.+.|.+.+. +.+++ .|.|.... +-.+ ...|.+++..|.-= ..+..|.|++++..++++++. ..|+...
T Consensus 2 ~~~~~~l~~~~~--~~~vv--~d~G~~~~~~~~~-~~~~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i~GDG~f~m~~ 75 (179)
T cd03372 2 RDAIKTLIADLK--DELVV--SNIGFPSKELYAA-GDRPLNFYMLGSMG-LASSIGLGLALAQPRKVIVIDGDGSLLMNL 75 (179)
T ss_pred HHHHHHHHHhCC--CCeEE--eCCCHhHHHHHHc-cCcccccccccchh-hHHHHHHHHHhcCCCcEEEEECCcHHHhCH
Confidence 345555666555 33333 35443321 1111 13466776432211 233467777766436777774 4454222
Q ss_pred HHHHHHhhhcCC-CCEEEE-eecCCccCCCCCCCCC---hhHHH-HhhcCCCcEEEecC-CHHHHHHHHHHHHhhCCCCE
Q 004227 546 YDQVVHDVDLQK-LPVRFA-MDRAGLVGADGPTHCG---AFDVT-FMSCLPNMVVMAPS-DEAELMHMVATAAVIDDRPS 618 (767)
Q Consensus 546 ~dQi~~~~a~~~-lpViiv-~~~~Gl~G~dG~TH~~---~~Dla-~lr~iPg~~V~~Ps-d~~E~~~~l~~A~~~~~~P~ 618 (767)
..+ ..++..+ .|++++ +...++ +..+..+.. .-|.. +.+.+ |+...... +.+|+..++++++ ++|.
T Consensus 76 -~el-~ta~~~~~~~l~vvV~NN~~~-~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~ 148 (179)
T cd03372 76 -GAL-ATIAAEKPKNLIIVVLDNGAY-GSTGNQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPS 148 (179)
T ss_pred -HHH-HHHHHcCCCCEEEEEEcCccc-cccCCCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCE
Confidence 222 3344455 455554 455553 211211111 11222 22332 55555666 9999999999996 6898
Q ss_pred EEEec
Q 004227 619 CFRFP 623 (767)
Q Consensus 619 ~irl~ 623 (767)
+|-..
T Consensus 149 lIev~ 153 (179)
T cd03372 149 FIHVK 153 (179)
T ss_pred EEEEE
Confidence 87553
No 242
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=86.61 E-value=9.8 Score=41.68 Aligned_cols=103 Identities=9% Similarity=0.074 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhc------CCeeEEeec--hhHHHhHHHHHHHhhhcCCCCEEEEeecCCc---cCC-------CC-----
Q 004227 518 HAVTFAAGLASE------GVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL---VGA-------DG----- 574 (767)
Q Consensus 518 ~~vg~AaGlA~~------G~rP~~~ty--s~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl---~G~-------dG----- 574 (767)
+..++|.|++.+ +-..++++. +.+..-.++.+ +.++..++||++++-.-.. +|. -|
T Consensus 73 ~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l-~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 73 ATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQAL-SGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHH-HHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 344555555554 334566553 44555556554 6678899999988733222 221 01
Q ss_pred ----C--CCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 575 ----P--THCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 575 ----~--TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
. ..-.+..+......|-+....|.|+.++...++.|++ .++|.+|..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~ 204 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHL 204 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 0112334444345666778999999999999999987 678988755
No 243
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=86.50 E-value=7.3 Score=46.22 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=74.4
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCee-EEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKP-FCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP-~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ .-|++++.+|.|.|.. |.-. ++.|+.+.+..++.-+ ..+...+.||+++.........+-..+|..+...+
T Consensus 49 ~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i-~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~ 126 (568)
T PRK07449 49 RLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAV-IEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGL 126 (568)
T ss_pred EEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHH-HHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhH
Confidence 66655 8999999999999986 5333 3445788776666655 45567899999986433221111223667777788
Q ss_pred hhcCCCcEEEecCCHH----H-HHHHHHH---HHhhCCCCEEEEecCC
Q 004227 586 MSCLPNMVVMAPSDEA----E-LMHMVAT---AAVIDDRPSCFRFPRG 625 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~----E-~~~~l~~---A~~~~~~P~~irl~r~ 625 (767)
++.+-...+-.|.+.. + +..+++. +.....+|++|-+|..
T Consensus 127 ~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 127 FGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred hhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 8876655555665521 1 2334444 3333568999999865
No 244
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=86.46 E-value=2.9 Score=42.93 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=65.4
Q ss_pred hhhhCCCcEEeccccHHHHHH----HHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCcc--
Q 004227 501 FQKRFPDRCFDVGIAEQHAVT----FAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV-- 570 (767)
Q Consensus 501 f~~~~P~R~~d~GIaE~~~vg----~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl~-- 570 (767)
+.-+.|.+|+..+ -...+| .|.|++++. -++++++ -..|+.-. |-+..+...++|+++++ +..|+.
T Consensus 33 ~~~~~~~~~~~~~--~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~ 108 (205)
T cd02003 33 WRARTPGGYHLEY--GYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCI 108 (205)
T ss_pred CCcCCCCcEEcCC--CcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHH
Confidence 3335688888642 234444 566666543 3556665 35565322 22344567799976655 555531
Q ss_pred -------CCC--CCCCC-------------ChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 571 -------GAD--GPTHC-------------GAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 571 -------G~d--G~TH~-------------~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
+.. +.... ...|..-++.--|+..+...++.|+..+++.+++ .++|++|-.
T Consensus 109 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 109 NNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 100 00000 0123333332236777777999999999999976 578988754
No 245
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=85.49 E-value=14 Score=43.79 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=73.7
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~D 582 (767)
=+++.+ ..|++++.+|.|.|.. |.-.+|. ++.+.+..+..-| ..+...+.||+++...... .+.+ .+|..+.
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 121 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGI-ATAYMDSVPIVALTGQVPRSMIGND--AFQEADI 121 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccch
Confidence 466666 8999999999999986 6433333 4667666665554 4556789999988643322 1222 2444444
Q ss_pred HHHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 583 la~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
..+++.+-.. .+.-.++.++..+++.|++. ..+|++|.+|..
T Consensus 122 ~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 122 TGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred hhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 4555554322 33456777888888777762 358999999874
No 246
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=85.46 E-value=3.6 Score=41.89 Aligned_cols=120 Identities=9% Similarity=0.031 Sum_probs=68.8
Q ss_pred hhhhCCCcEEeccc-cH-HHHHHHHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCc--cCC
Q 004227 501 FQKRFPDRCFDVGI-AE-QHAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VGA 572 (767)
Q Consensus 501 f~~~~P~R~~d~GI-aE-~~~vg~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl--~G~ 572 (767)
+.-..|.+|+..+- .= -..+..|.|++++. -++++++ -..|+.-.-| + ..+...++|+++++ +..|+ ...
T Consensus 38 ~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~~~e-L-~Ta~~~~lpvi~vV~NN~~yg~~~~ 115 (196)
T cd02013 38 LRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSMME-I-MTAVRHKLPVTAVVFRNRQWGAEKK 115 (196)
T ss_pred cCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH-H-HHHHHhCCCeEEEEEECchhHHHHH
Confidence 33355788886421 11 23555777777653 4556665 4556644333 3 34567789987776 55554 110
Q ss_pred -----CC-----CCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh--hCCCCEEEEec
Q 004227 573 -----DG-----PTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV--IDDRPSCFRFP 623 (767)
Q Consensus 573 -----dG-----~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~--~~~~P~~irl~ 623 (767)
.+ ..+.. -|..-++.-=|+.-..-.++.|+..+++.+++ +.++|++|-..
T Consensus 116 ~q~~~~~~~~~~~~~~~-~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev~ 177 (196)
T cd02013 116 NQVDFYNNRFVGTELES-ESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEIV 177 (196)
T ss_pred HHHHHcCCCcccccCCC-CCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 01 01111 23332332236777788899999999999975 14789887553
No 247
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=85.17 E-value=7.2 Score=46.87 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=75.5
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVT 584 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla 584 (767)
=|++.+ -.|+.++.+|.|.|.. |...+|. +..+.+..++.-+ .++...+.||+++.............+|..+...
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~ 138 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGI-ATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFG 138 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCcccccHHH
Confidence 367777 9999999999999986 5443433 3666665555444 4556789999988643332111122355555556
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
+++.+-.+ .....+++++..++..|++. ..+|++|.+|..
T Consensus 139 ~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 139 ITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred Hhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 66654322 34467778888888877763 348999999864
No 248
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=84.86 E-value=13 Score=44.44 Aligned_cols=146 Identities=13% Similarity=0.106 Sum_probs=85.7
Q ss_pred HHHHHHHHHhCC--CEEEEeccccCCcCh---hhhhhhCC-CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHH
Q 004227 472 AESLIKEAETDD--KIVAIHAAMGGGTGL---NYFQKRFP-DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQ 543 (767)
Q Consensus 472 ~~aL~~~~~~d~--~ivvi~aD~~gs~gl---~~f~~~~P-~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ 543 (767)
+++|.+.+++.. .++.+. |+..+ +.+.+..+ =+++.+ -.|++++.+|-|.|.. |...+|. ++.+.+.
T Consensus 6 a~~l~~~L~~~GV~~vFGvp----G~~~~~l~dal~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 80 (597)
T PRK08273 6 ADFILERLREWGVRRVFGYP----GDGINGLLGALGRADDKPEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAI 80 (597)
T ss_pred HHHHHHHHHHCCCCEEEEeC----CCchHHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 455556555532 344433 22222 33433222 456655 8999999999999986 5444443 4777776
Q ss_pred hHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHHHHhhcCC-CcEEEecCCHHHHHHHHHHHHh---hCCCC
Q 004227 544 RGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLP-NMVVMAPSDEAELMHMVATAAV---IDDRP 617 (767)
Q Consensus 544 ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dla~lr~iP-g~~V~~Psd~~E~~~~l~~A~~---~~~~P 617 (767)
.+..-+ .++...+.||+++...... .+.+ .+|..+...+++.+- -. .....++.++...+..|++ ...+|
T Consensus 81 n~~~gi-~~A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gP 156 (597)
T PRK08273 81 HLLNGL-YDAKLDHVPVVAIVGQQARAALGGH--YQQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTV 156 (597)
T ss_pred HHHHHH-HHHHhcCCCEEEEecCCchhhcCCC--CCCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCC
Confidence 665554 4556789999988643322 2322 455555556666543 21 3455566666666655554 24589
Q ss_pred EEEEecCCC
Q 004227 618 SCFRFPRGN 626 (767)
Q Consensus 618 ~~irl~r~~ 626 (767)
++|.+|..-
T Consensus 157 V~i~iP~Dv 165 (597)
T PRK08273 157 TAVILPNDV 165 (597)
T ss_pred EEEEeCcch
Confidence 999998653
No 249
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=84.57 E-value=16 Score=39.68 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhc-CCeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCC--------------C--
Q 004227 518 HAVTFAAGLASE-GVKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--------------C-- 578 (767)
Q Consensus 518 ~~vg~AaGlA~~-G~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH--------------~-- 578 (767)
.++.+|.|++++ --++++++ -.+|+.-. .+-...++..++||++++-.-+..|.-+.+. .
T Consensus 72 ~alPaAiGaklA~Pdr~VV~i~GDG~f~~~g-~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~ 150 (277)
T PRK09628 72 RAVAYATGIKLANPDKHVIVVSGDGDGLAIG-GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGN 150 (277)
T ss_pred cHHHHHHHHHHHCCCCeEEEEECchHHHHhh-HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCC
Confidence 667788888876 23455555 34454322 2323346788999888774432222111000 0
Q ss_pred --ChhHHHHhhcCCCcEE---EecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 579 --GAFDVTFMSCLPNMVV---MAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 579 --~~~Dla~lr~iPg~~V---~~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
...|+.-++.--|..- ....++.|+..+++.|++ .++|++|-..
T Consensus 151 ~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~-~~Gp~lIeV~ 199 (277)
T PRK09628 151 IDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS-HKGFSFFDVF 199 (277)
T ss_pred cCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh-CCCCEEEEEc
Confidence 1112222222224442 578999999999999987 5789888653
No 250
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=84.08 E-value=6.2 Score=37.76 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEE-cCCcccCcchHHHHHHHHHcCCCEEEEEECCC
Q 004227 258 SISAGLGMAVARDILGKNNNVISVI-GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~vi-GDGal~eG~~~EAln~A~~~~~nli~Iv~dN~ 314 (767)
+..+|.|+|.+ +. ..++++. |.|..+ ..+++..|...+.|+++|..+.+
T Consensus 47 a~~~A~G~a~~----~~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~ 96 (154)
T cd06586 47 AAGAAAGYARA----GG-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARG 96 (154)
T ss_pred HHHHHHHHHHh----hC-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCC
Confidence 35566666665 33 3333444 888764 77888888888899999997665
No 251
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=84.04 E-value=3.7 Score=41.99 Aligned_cols=120 Identities=14% Similarity=0.082 Sum_probs=69.0
Q ss_pred hhhhhCCCcEEeccc-cHH-HHHHHHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCccCC-
Q 004227 500 YFQKRFPDRCFDVGI-AEQ-HAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGA- 572 (767)
Q Consensus 500 ~f~~~~P~R~~d~GI-aE~-~~vg~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl~G~- 572 (767)
.+.-..|.+|++.+- .=. ..+..|.|++++. -++++++ -..|+...-| +..+...++|+++++ ...|+ |.
T Consensus 41 ~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m~~~e--L~Ta~~~~lpviivV~NN~~y-g~~ 117 (202)
T cd02006 41 MLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEE--LAVGAQHRIPYIHVLVNNAYL-GLI 117 (202)
T ss_pred hcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhccHHH--HHHHHHhCCCeEEEEEeCchH-HHH
Confidence 344456788887642 211 1445677777653 4566666 4556544422 244677799977776 44443 11
Q ss_pred --------CC----CCCCC---------hhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEe
Q 004227 573 --------DG----PTHCG---------AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 573 --------dG----~TH~~---------~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl 622 (767)
++ ..+.. .-|..-++.--|+.-+...++.|+..+++.+++ ..++|++|-.
T Consensus 118 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 118 RQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 00 01110 123332332236777888999999999999985 2578988755
No 252
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=83.64 E-value=8.5 Score=39.35 Aligned_cols=99 Identities=8% Similarity=0.113 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhc----C-CeeEEeechhHH-H--hHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcC
Q 004227 518 HAVTFAAGLASE----G-VKPFCAIYSSFL-Q--RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCL 589 (767)
Q Consensus 518 ~~vg~AaGlA~~----G-~rP~~~tys~Fl-~--ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~i 589 (767)
+.+++|.|+|++ | -++++++..+.- + ..++.+ +.++..+.|++++.+..++ +.++++. ...+ .++.
T Consensus 79 ~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~~~li~vvdnN~~-~~~~~~~-~~~~--~~~a- 152 (195)
T cd02007 79 TSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEAL-NNAGYLKSNMIVILNDNEM-SISPNVG-TPGN--LFEE- 152 (195)
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHH-HHHHHhCCCEEEEEECCCc-ccCCCCC-CHHH--HHHh-
Confidence 344566666654 3 244555544331 2 334554 4456669999999988774 3445543 2332 3343
Q ss_pred CCcEE---EecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 590 PNMVV---MAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 590 Pg~~V---~~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
-++.+ +...|..++...++.+.+ .++|++|...
T Consensus 153 ~G~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~~ 188 (195)
T cd02007 153 LGFRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHVV 188 (195)
T ss_pred cCCCccceECCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 24433 566788999999988855 6789988653
No 253
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=83.50 E-value=19 Score=39.15 Aligned_cols=146 Identities=13% Similarity=0.174 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEecc-c--cHHHHHHHHHHHHhcC-CeeEEeec--h
Q 004227 466 TYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVG-I--AEQHAVTFAAGLASEG-VKPFCAIY--S 539 (767)
Q Consensus 466 s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~G-I--aE~~~vg~AaGlA~~G-~rP~~~ty--s 539 (767)
....++.++|.++....++.+++ .|.|-+..+ | ++++++ + .=..++.+|.|++++. -++++++. .
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GDG 97 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVV-SGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGDG 97 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEE-eCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCcc
Confidence 34566666666554444455444 466543321 1 234331 1 1133455677777753 34555553 3
Q ss_pred hHHHhHHHHHHHhhhcCCCCEEEEe-ecCCc--cC-CCCC----------CCCCh----hHH-HHhhcCCC--cEEEecC
Q 004227 540 SFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGP----------THCGA----FDV-TFMSCLPN--MVVMAPS 598 (767)
Q Consensus 540 ~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl--~G-~dG~----------TH~~~----~Dl-a~lr~iPg--~~V~~Ps 598 (767)
++++-....+. .++..++|+++++ +..++ ++ ...+ +..+. .|. ++...... +......
T Consensus 98 ~~f~mg~~eL~-tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~ 176 (286)
T PRK11867 98 DALAIGGNHFI-HALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDS 176 (286)
T ss_pred HHHhCCHHHHH-HHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCC
Confidence 32334444443 4577899977776 33332 22 1111 00110 122 22223222 2233578
Q ss_pred CHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 599 DEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 599 d~~E~~~~l~~A~~~~~~P~~irl 622 (767)
++.|+..+++.|++ .++|++|-.
T Consensus 177 ~~~el~~al~~Al~-~~Gp~lIev 199 (286)
T PRK11867 177 DVKQLTELIKAAIN-HKGFSFVEI 199 (286)
T ss_pred CHHHHHHHHHHHHh-CCCCEEEEE
Confidence 99999999999987 578988755
No 254
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=83.17 E-value=23 Score=41.89 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=75.7
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCcc--CCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~--G~dG~TH~~~~Dl 583 (767)
|++.+ -.|++++.+|.|.|.. |.-.+|. +..+....+.--+ ..+...+.||+++....... +.....+|..+..
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~ 119 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQL 119 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHH-HHHHhcCCCEEEEEccCCccccccCCCCcchhhHH
Confidence 66665 8999999999999986 5444444 3566665555444 44567899999886332221 1122346666666
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHh----hCCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~----~~~~P~~irl~r~ 625 (767)
.+++.+-.. .+...++.++..++..|++ ...+|++|-+|..
T Consensus 120 ~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 120 AAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 777765443 5566677777777776665 2347899999864
No 255
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=83.15 E-value=31 Score=35.10 Aligned_cols=99 Identities=10% Similarity=0.102 Sum_probs=54.5
Q ss_pred HHHHHHHHhc-CCeeEEeec--hhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCccCCCCCCC-----------C---C--
Q 004227 520 VTFAAGLASE-GVKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTH-----------C---G-- 579 (767)
Q Consensus 520 vg~AaGlA~~-G~rP~~~ty--s~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl~G~dG~TH-----------~---~-- 579 (767)
+..|.|++++ .-++++++. ..|++.....+ ..+...++|++++. +..++ |.-+.++ . .
T Consensus 57 lpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL-~ta~~~~lpv~iiVlnN~~y-g~~~~~~~~~~~~~~~~~~~~~~~~ 134 (193)
T cd03375 57 LAVATGVKLANPDLTVIVVSGDGDLAAIGGNHF-IHAARRNIDITVIVHNNQIY-GLTKGQASPTTPEGFKTKTTPYGNI 134 (193)
T ss_pred HHHHHHHHHhCCCCeEEEEeccchHhhccHHHH-HHHHHhCCCeEEEEEcCccc-ccCCCccCCCCCCCCcccCCCCCCC
Confidence 3467776665 345666663 33333333333 34467789988666 44443 2111000 0 0
Q ss_pred --hhHHH-HhhcCCCcEE---EecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 580 --AFDVT-FMSCLPNMVV---MAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 580 --~~Dla-~lr~iPg~~V---~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
..|.. +.+.+ +..- ....++.|+...++.|++ .++|++|-.
T Consensus 135 ~~~~d~~~iA~a~-G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev 181 (193)
T cd03375 135 EEPFNPLALALAA-GATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEV 181 (193)
T ss_pred CCCCCHHHHHHHC-CCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 01222 22222 3332 468999999999999986 688988755
No 256
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=82.59 E-value=10 Score=45.20 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=72.3
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++.+ ..|++++.+|.|.|.. |.-.+|. +..+.+..+..-+ ..+-..+.||+++...... .+.+ .+|..+..
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~~ 128 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGI-ATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDIF 128 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--Cccccchh
Confidence 56664 8999999999999986 5444433 4667665555444 4556789999998643332 2222 24444444
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
.+++.+-.. .....++.++..+++.|++. ..+|++|.+|..
T Consensus 129 ~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 129 GITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred hhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 455543222 34556777888888777753 347999999865
No 257
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=82.50 E-value=16 Score=41.96 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=70.6
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
+++.+ ..|+++.-+|-|.|.. |.-.+|. |+.+....++--+ ..+...+.||+++...... .+. ..+|..+..
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~ 115 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV-IEASYSGVPLIVLTADRPPELRGC--GANQTIDQP 115 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH-HHhcccCCcEEEEeCCCCHHHhCC--CCCcccchh
Confidence 55554 8999999999999997 5433333 4677665555444 3456689999998633222 222 235666666
Q ss_pred HHhhcCCCc--EEEecCC-------HHHHHHHHHHHHhhCCCCEEEEecCCC
Q 004227 584 TFMSCLPNM--VVMAPSD-------EAELMHMVATAAVIDDRPSCFRFPRGN 626 (767)
Q Consensus 584 a~lr~iPg~--~V~~Psd-------~~E~~~~l~~A~~~~~~P~~irl~r~~ 626 (767)
.+++.+-.+ .|-.|.+ +..+..+++.|.....+|++|-+|...
T Consensus 116 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 116 GLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 777765443 2334554 123444444444334589999998643
No 258
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=82.16 E-value=15 Score=39.11 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhc------CCeeEEee-chhHHH-hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCC--ChhHH-HH
Q 004227 518 HAVTFAAGLASE------GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC--GAFDV-TF 585 (767)
Q Consensus 518 ~~vg~AaGlA~~------G~rP~~~t-ys~Fl~-ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~--~~~Dl-a~ 585 (767)
..++.|.|+|++ ..+.+|-+ -..|.. ..++.+ +.++..++| ++++.+..++ +.+++++. ...|+ ..
T Consensus 109 ~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal-~~a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~ 186 (255)
T cd02012 109 QGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAA-SFAGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKK 186 (255)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHH-HHHHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHH
Confidence 344566676665 34555444 344432 245554 456778886 7777777664 44455432 22333 33
Q ss_pred hhcCCCcEEEecC--CHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 586 MSCLPNMVVMAPS--DEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 586 lr~iPg~~V~~Ps--d~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
++.+ |+.++.-. |..++...++.+.+..++|++|...
T Consensus 187 ~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 187 FEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred HHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 4443 78777766 8999999999987643789888664
No 259
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=81.89 E-value=16 Score=39.29 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=41.7
Q ss_pred cccchhHHHHHHHHHHHH--H-cCC--C--CeEEEEEcCCc--ccCcchHHHHHHHHHcCCCEEEEEECCC
Q 004227 253 GHSSTSISAGLGMAVARD--I-LGK--N--NNVISVIGDGA--MTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (767)
Q Consensus 253 G~~G~~ls~A~G~AlA~k--l-~g~--~--~~Vv~viGDGa--l~eG~~~EAln~A~~~~~nli~Iv~dN~ 314 (767)
+.-|+.++.++-.|+..= . .+. . .+++.++.||+ .++|..-+++..|...+..+++|+-||.
T Consensus 135 ~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 135 QQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 334455666665555421 1 111 1 28999999999 8899887878888888877777776664
No 260
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=81.44 E-value=27 Score=41.57 Aligned_cols=116 Identities=12% Similarity=0.024 Sum_probs=76.8
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~D 582 (767)
=|++.+ -.|++++.+|.|.+.. |...+|. +..+.+..+..-+ ..+...+.||+++...... .+.+-.++|..+.
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 356655 8999999999999997 5444444 3667665665554 4556789999988633221 1111224666666
Q ss_pred HHHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 583 la~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
..+++.+-.. .+...++.++...+..|+.. ..+|++|-+|+.
T Consensus 126 ~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 126 LNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred hhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 6777765443 45556788888877777763 357899999865
No 261
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=81.18 E-value=38 Score=34.35 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=60.3
Q ss_pred CCCcEEeccccHHHHHHHHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCC-CEEE-EeecCCccCCCC--CCC
Q 004227 505 FPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKL-PVRF-AMDRAGLVGADG--PTH 577 (767)
Q Consensus 505 ~P~R~~d~GIaE~~~vg~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~l-pVii-v~~~~Gl~G~dG--~TH 577 (767)
.|.+|+..|-.= ..++.|.|++++. -++++++ -..|+.-. .. +..++..++ |+++ +.+..|+ |..+ .+.
T Consensus 40 ~~~~~~~~g~mG-~~lpaAiGaala~p~~~Vv~i~GDG~f~m~~-~e-L~ta~~~~l~~i~ivV~NN~~y-g~~~~~~~~ 115 (188)
T cd03371 40 HAQDFLTVGSMG-HASQIALGIALARPDRKVVCIDGDGAALMHM-GG-LATIGGLAPANLIHIVLNNGAH-DSVGGQPTV 115 (188)
T ss_pred ccCceeecCccc-cHHHHHHHHHHhCCCCcEEEEeCCcHHHhhc-cH-HHHHHHcCCCCcEEEEEeCchh-hccCCcCCC
Confidence 358888753221 1345677777653 3566665 34454322 22 234455665 5444 4455553 2111 111
Q ss_pred CChhHHH-HhhcCCCcEE-EecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 578 CGAFDVT-FMSCLPNMVV-MAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 578 ~~~~Dla-~lr~iPg~~V-~~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
....|.. +.+.+ |+.- ....+..|+..+++.+++ .++|++|...
T Consensus 116 ~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev~ 161 (188)
T cd03371 116 SFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEVK 161 (188)
T ss_pred CCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 1112322 33333 5543 456799999999999976 5789887653
No 262
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=80.52 E-value=31 Score=41.04 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=75.0
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCC----C--CCC
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGAD----G--PTH 577 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~d----G--~TH 577 (767)
|++.+ -.|++++.+|-|.|.. |...+|. +..+.+..+..-+ ..+...+.||+++...... .+.+ - ..+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGV-HNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHH-HHHhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 77766 7899999999999997 4333333 4777776666554 3446779999988643221 1111 0 123
Q ss_pred CC-hhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 578 CG-AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 578 ~~-~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
|. .+...+++.+-.. .+...++.++..++..|++. ..+|++|.+|..
T Consensus 130 qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 130 QEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred hhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 44 4555677754332 45677788888888777762 357999999854
No 263
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=79.98 E-value=46 Score=36.55 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhc----CC-eeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCc--cCCCC-C----------C
Q 004227 518 HAVTFAAGLASE----GV-KPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VGADG-P----------T 576 (767)
Q Consensus 518 ~~vg~AaGlA~~----G~-rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl--~G~dG-~----------T 576 (767)
+++++|.|++.+ +. ++++++ -+.|..-++..+. .+...+.++++++ |...+ +|..- + +
T Consensus 73 ~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~-~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~ts 151 (299)
T PRK11865 73 NAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLS-GAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTS 151 (299)
T ss_pred chHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHH-HHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccC
Confidence 566677776654 42 345555 3556666666664 4567788887776 33322 22110 0 0
Q ss_pred ------------CCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 577 ------------HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 577 ------------H~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
.-....++.....|-+....|.|+.|+...++.|.+ .++|++|..
T Consensus 152 p~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v 208 (299)
T PRK11865 152 PAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQV 208 (299)
T ss_pred CCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 112333333345666778899999999999999986 678988765
No 264
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=78.08 E-value=12 Score=37.16 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=62.4
Q ss_pred hCCCcEEeccccHH-HHHHHHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCc--cC-----
Q 004227 504 RFPDRCFDVGIAEQ-HAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG----- 571 (767)
Q Consensus 504 ~~P~R~~d~GIaE~-~~vg~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl--~G----- 571 (767)
+.|.+++..+-.=. ..+..|.|++++- -++++++ -..|+.-. ..+ ..+...++|+++++ +..++ ..
T Consensus 38 ~~~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~-~el-~ta~~~~~p~~~iV~nN~~~~~~~~~~~~ 115 (178)
T cd02002 38 TRPGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTI-QAL-WTAARYGLPVTVVILNNRGYGALRSFLKR 115 (178)
T ss_pred CCCCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhccH-HHH-HHHHHhCCCeEEEEEcCccHHHHHHHHHH
Confidence 45788886533111 1344667776653 3455555 35565322 222 34566789987776 44443 10
Q ss_pred --CC--------CC-CCCChhHHH-HhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 572 --AD--------GP-THCGAFDVT-FMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 572 --~d--------G~-TH~~~~Dla-~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
.+ +. ......|+. +...+ |+..+.-.++.|+...++.+.+ .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 116 VGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 00 001112332 22332 5666677889999999999976 578988753
No 265
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=77.74 E-value=10 Score=36.81 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCC------------CCCChhHH
Q 004227 519 AVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGP------------THCGAFDV 583 (767)
Q Consensus 519 ~vg~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~------------TH~~~~Dl 583 (767)
.++.|.|+++.. -++++++ -..|+. ..+.+ ..+...++|+++++...+..+..+. ......|+
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l-~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQEL-ATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHH-HHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 345677777664 2444444 355553 34443 4456779998877744332111000 11112233
Q ss_pred H-HhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 584 T-FMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 584 a-~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
. +.+. -|+......+..|+..+++.+.+ .++|++|..
T Consensus 129 ~~~a~~-~G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 129 AALAEA-YGAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred HHHHHH-CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2 3333 36777777889999999999975 678988754
No 266
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=76.87 E-value=6.5 Score=33.05 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=45.8
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc-cCCEEEEEcCCCCCCHHHH
Q 004227 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFGSH 721 (767)
Q Consensus 654 dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~-~~~~vVvvEe~~~GGlgs~ 721 (767)
+++|.+. +....|..|.+.|++.||..+.+|+..-.+ ..+.+.+... .+-..|++.+...||+-..
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~~~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNEKLVGGLTDL 68 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEeCHHHH
Confidence 4666665 566889999999999999999999874332 2334444433 3346677777778998753
No 267
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=76.34 E-value=6.8 Score=34.69 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHH---HHHHh-ccCCEEEEEcCCCCCCHHHHHH
Q 004227 652 GDRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL---IRQLA-NEHEILITVEEGSVGGFGSHVC 723 (767)
Q Consensus 652 G~dvtIva~G----s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~---i~~~~-~~~~~vVvvEe~~~GGlgs~I~ 723 (767)
..+|+|++.| +....|..|.+.|++.|+..+.+|+.. |.+. +.+.- ..+-..|++.....||+....+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~ 82 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKE 82 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHH
Confidence 4689999988 478999999999999999999999752 3332 22221 1233456777666899875443
No 268
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=76.14 E-value=24 Score=42.27 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=64.3
Q ss_pred EeccccHHHHHHHHHHHHhc----CC-eeEEeec--hhHHH-hHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCC----
Q 004227 510 FDVGIAEQHAVTFAAGLASE----GV-KPFCAIY--SSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH---- 577 (767)
Q Consensus 510 ~d~GIaE~~~vg~AaGlA~~----G~-rP~~~ty--s~Fl~-ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH---- 577 (767)
+..|+.= +.+++|.|+|++ |. ..+++.+ ..+.. .++|.+ +.++.+++|++++.+.-++. .++++-
T Consensus 110 ~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAl-n~A~~~k~~li~Ii~dN~~s-i~~~~~~~~~ 186 (581)
T PRK12315 110 FTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGL-NNAAELKSNLIIIVNDNQMS-IAENHGGLYK 186 (581)
T ss_pred cCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHH-HHHHhhCCCEEEEEECCCCc-CCCCCchhhh
Confidence 4666643 467788888775 32 2344443 33443 567775 67788889999999877752 222221
Q ss_pred C-C------hhH-HHHhhcCCCcEEE---ecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 578 C-G------AFD-VTFMSCLPNMVVM---APSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 578 ~-~------~~D-la~lr~iPg~~V~---~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
. . ..+ -..+..+ |+..+ ...|..++..+++.+- ..++|++|...
T Consensus 187 ~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~-~~~gP~~i~~~ 241 (581)
T PRK12315 187 NLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVK-DIDHPIVLHIH 241 (581)
T ss_pred hhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHH-hCCCCEEEEEE
Confidence 1 0 001 1234543 55544 5567777777777764 35789988653
No 269
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=74.63 E-value=36 Score=36.98 Aligned_cols=149 Identities=10% Similarity=0.109 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcC-CeeEEeec--hhHH
Q 004227 466 TYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIY--SSFL 542 (767)
Q Consensus 466 s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G-~rP~~~ty--s~Fl 542 (767)
....++.+++.++--..++.+++ .|.|.+..+..+.+ +.. +... =..++.+|.|+.++. -++++++. .+|+
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~~~~~~~~--~~~-~~~~--mG~alp~AiGaklA~pd~~VVai~GDG~~~ 91 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIV-SGIGQAAKMPHYIN--VNG-FHTL--HGRAIPAATAVKATNPELTVIAEGGDGDMY 91 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEE-eCchHhhhHHHHcc--CCC-CCcc--cccHHHHHHHHHHHCCCCcEEEEECchHHh
Confidence 44567777776653333454444 45553332222211 111 1111 123566777777765 46677764 4454
Q ss_pred HhHHHHHHHhhhcCCCCEEEEe-ecCCc--cC-CCCCC--------------CCChhHHHHhhcCCCcEEEe---cCCHH
Q 004227 543 QRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGPT--------------HCGAFDVTFMSCLPNMVVMA---PSDEA 601 (767)
Q Consensus 543 ~ra~dQi~~~~a~~~lpViiv~-~~~Gl--~G-~dG~T--------------H~~~~Dla~lr~iPg~~V~~---Psd~~ 601 (767)
.-+...+ ..++..++||++++ +..++ ++ ..-++ -....|+.-++.--|..-++ +.++.
T Consensus 92 ~iG~~eL-~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~ 170 (280)
T PRK11869 92 AEGGNHL-IHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIE 170 (280)
T ss_pred hCcHHHH-HHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHH
Confidence 3434554 34577899988777 44332 22 11000 00111332233223444444 99999
Q ss_pred HHHHHHHHHHhhCCCCEEEEe
Q 004227 602 ELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 602 E~~~~l~~A~~~~~~P~~irl 622 (767)
|+...++.|++ .++|++|-.
T Consensus 171 ~l~~~i~~Al~-~~Gp~lIeV 190 (280)
T PRK11869 171 ETKEILKEAIK-HKGLAIVDI 190 (280)
T ss_pred HHHHHHHHHHh-CCCCEEEEE
Confidence 99999999987 578988754
No 270
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=74.60 E-value=18 Score=40.61 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCCe--eEEeechhHH--H-hHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCC-CChhHH----HHh
Q 004227 518 HAVTFAAGLASEGVK--PFCAIYSSFL--Q-RGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTH-CGAFDV----TFM 586 (767)
Q Consensus 518 ~~vg~AaGlA~~G~r--P~~~tys~Fl--~-ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH-~~~~Dl----a~l 586 (767)
+++|+|.++-+.|.. ..+++|.+.. + --++. +|.++..++||+|++-..+. .+ =|.. |...++ +..
T Consensus 144 ~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEa-lN~A~v~klPvvf~ieNN~yAiS--vp~~~q~~~~~~~~ra~a 220 (358)
T COG1071 144 LAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEA-LNFAAVWKLPVVFVIENNQYAIS--VPRSRQTAAEIIAARAAA 220 (358)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHH-HHHHHHhcCCEEEEEecCCceee--cchhhcccchhHHhhhhc
Confidence 566666666666733 3444455542 1 12333 48889999999999977664 23 1222 333322 223
Q ss_pred hcCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEe
Q 004227 587 SCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRF 622 (767)
Q Consensus 587 r~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl 622 (767)
-.||+++| .=.|...+..+.+.|+++ .++|++|..
T Consensus 221 ygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 221 YGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred cCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 36899988 888888888888888763 557998744
No 271
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=74.00 E-value=46 Score=36.56 Aligned_cols=102 Identities=11% Similarity=0.160 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcC-CeeEEeec--hhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCc--cCCC-CCCC----------C---
Q 004227 519 AVTFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VGAD-GPTH----------C--- 578 (767)
Q Consensus 519 ~vg~AaGlA~~G-~rP~~~ty--s~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl--~G~d-G~TH----------~--- 578 (767)
++.+|.|++++. -++++++- .+|+......+. .++..++|+++++ +..++ ++.. -++. .
T Consensus 75 alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~-tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFI-HAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHH-HHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCc
Confidence 455777777763 45566653 444434444544 4578899977776 44433 2210 0010 0
Q ss_pred -ChhHHHHhhcCCCcEEE---ecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 579 -GAFDVTFMSCLPNMVVM---APSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 579 -~~~Dla~lr~iPg~~V~---~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
...|+.-++.--|...+ ...+..|+..+++.|+. .++|++|-.
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11233333332355443 68999999999999986 678988754
No 272
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=73.74 E-value=7.6 Score=37.59 Aligned_cols=115 Identities=22% Similarity=0.186 Sum_probs=64.1
Q ss_pred hCCCcEEec--cccHHHHHHHHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCc--cC----
Q 004227 504 RFPDRCFDV--GIAEQHAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGL--VG---- 571 (767)
Q Consensus 504 ~~P~R~~d~--GIaE~~~vg~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl--~G---- 571 (767)
..|.+|+.. .-+=..+++.|.|++++. -++++++ -.+|+.-. ..+ ..+...++|+++++ +..++ .+
T Consensus 16 ~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~-~el-~ta~~~~~~v~~vv~nN~~~~~~~~~~~ 93 (153)
T PF02775_consen 16 RRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSL-QEL-ATAVRYGLPVVIVVLNNGGYGMTGGQQT 93 (153)
T ss_dssp SSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHG-GGH-HHHHHTTSSEEEEEEESSBSHHHHHHHH
T ss_pred CCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeecc-chh-HHHhhccceEEEEEEeCCcceEeccccc
Confidence 447888872 223345667777777762 3455554 45565432 222 34566788977766 44443 11
Q ss_pred CCCC-C--C-----CChhHHHHhhcCCCcEEEe--cCCHHHHHHHHHHHHhhCCCCEEEE
Q 004227 572 ADGP-T--H-----CGAFDVTFMSCLPNMVVMA--PSDEAELMHMVATAAVIDDRPSCFR 621 (767)
Q Consensus 572 ~dG~-T--H-----~~~~Dla~lr~iPg~~V~~--Psd~~E~~~~l~~A~~~~~~P~~ir 621 (767)
..+. + . ...-|+.-++.--|+..+. +.|.+|+...++++++ .++|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 94 PFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp HTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred cCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 0111 1 0 1122333333223666655 4455999999999985 68898873
No 273
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=72.96 E-value=16 Score=42.20 Aligned_cols=151 Identities=23% Similarity=0.271 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCEEEEe-ccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHh----c-CCeeEEee-
Q 004227 465 LTYTQYFAESLIKEAETDDKIVAIH-AAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLAS----E-GVKPFCAI- 537 (767)
Q Consensus 465 ~s~~~af~~aL~~~~~~d~~ivvi~-aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~----~-G~rP~~~t- 537 (767)
.+|..++ ..+.+.+..+..|++-. ++.- ..|-.-+..+.|.|.+|.|-- +-+|+..|+|+ . =-+.+++.
T Consensus 380 LN~~~~~-~~vre~L~~~d~ilVsEGantm-digr~~l~~~~Pr~rLDaGtf--gTMGVG~Gfalaaa~~~P~~~V~~ve 455 (571)
T KOG1185|consen 380 LNYYQVL-QTVRELLPNDDTILVSEGANTM-DIGRTLLPPRGPRRRLDAGTF--GTMGVGLGFALAAALAAPDRKVVCVE 455 (571)
T ss_pred CcHHHHH-HHHHHhcCCCCcEEEecCCcch-hhhhhhccCCCcccccCCccc--cccccchhHHHHHHhhCCCCeEEEEe
Confidence 4565555 44555555433333322 2211 112235667789999997753 23333333333 2 13344444
Q ss_pred -chhHHHhHHHHHHHhhhcCCCCEEEEee-cCCccCCC--CCCCCC----hhHHHHhhcCC-----------CcEEEecC
Q 004227 538 -YSSFLQRGYDQVVHDVDLQKLPVRFAMD-RAGLVGAD--GPTHCG----AFDVTFMSCLP-----------NMVVMAPS 598 (767)
Q Consensus 538 -ys~Fl~ra~dQi~~~~a~~~lpViiv~~-~~Gl~G~d--G~TH~~----~~Dla~lr~iP-----------g~~V~~Ps 598 (767)
-+.|=.-++| +..++..++||+++.. ..|+.|.| |.+.-. ..|+.-..-.+ |..=+.-.
T Consensus 456 GDsaFGfSaME--~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~ 533 (571)
T KOG1185|consen 456 GDSAFGFSAME--LETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS 533 (571)
T ss_pred cCcccCcchhh--HHHHHHhcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC
Confidence 4555433433 2345667999887775 66664432 221110 01111111111 22223445
Q ss_pred CHHHHHHHHHHHHhhCCCCEEEE
Q 004227 599 DEAELMHMVATAAVIDDRPSCFR 621 (767)
Q Consensus 599 d~~E~~~~l~~A~~~~~~P~~ir 621 (767)
++.|+.+.++++++..++|++|-
T Consensus 534 t~~el~~~l~~a~q~~~~psvIN 556 (571)
T KOG1185|consen 534 TVEELLAALQQACQDTDKPSVIN 556 (571)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEE
Confidence 89999999999998777898874
No 274
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=72.91 E-value=36 Score=34.28 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=63.0
Q ss_pred hCCCcEEeccc-c-HHHHHHHHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCcc--C---C
Q 004227 504 RFPDRCFDVGI-A-EQHAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLV--G---A 572 (767)
Q Consensus 504 ~~P~R~~d~GI-a-E~~~vg~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl~--G---~ 572 (767)
..|.+++..+- . =-..++.|.|++++- -++++.+ -..|+.-..| +. .+...++|+++++ ...|+. . .
T Consensus 38 ~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~~~e-l~-ta~~~~~p~~ivV~nN~~~~~~~~~~~ 115 (183)
T cd02005 38 PKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQE-LS-TMIRYGLNPIIFLINNDGYTIERAIHG 115 (183)
T ss_pred CCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhccHHH-HH-HHHHhCCCCEEEEEECCCcEEEEEecc
Confidence 44678886421 1 112334566666552 3455555 3556543333 33 4556678866665 444431 0 0
Q ss_pred CCCCCCC--hhHHH-HhhcC---CCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 573 DGPTHCG--AFDVT-FMSCL---PNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 573 dG~TH~~--~~Dla-~lr~i---Pg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
.+..+.. ..|.. +...+ |+...+...+..|+...++.+++..++|++|-..
T Consensus 116 ~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev~ 172 (183)
T cd02005 116 PEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEVI 172 (183)
T ss_pred CCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1111111 12322 22222 1366778899999999999998634689887653
No 275
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=72.79 E-value=45 Score=33.25 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=51.8
Q ss_pred HHHHHHHhcC-CeeEEeec--hhHHHhHHHHHHHhhhcCCCCEEEEe-ecCCccCCCCCC-----------CCChhHHH-
Q 004227 521 TFAAGLASEG-VKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPT-----------HCGAFDVT- 584 (767)
Q Consensus 521 g~AaGlA~~G-~rP~~~ty--s~Fl~ra~dQi~~~~a~~~lpViiv~-~~~Gl~G~dG~T-----------H~~~~Dla- 584 (767)
+.|.|++++. -++++++. ..|+.-+...+ ..+...++|+++++ +..++ |..+.. .....|+.
T Consensus 58 ~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL-~ta~~~~l~i~vvV~nN~~~-g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVIGDSTFFHSGILGL-INAVYNKANITVVILDNRTT-AMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhCCCCCEEEEecChHHhhccHHHH-HHHHHcCCCEEEEEECCcce-eccCCCCCCCCcccccCCCCccCHHH
Confidence 3566666653 35566663 55653333333 34567899977666 44443 211110 01112222
Q ss_pred Hhhc--CCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEe
Q 004227 585 FMSC--LPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRF 622 (767)
Q Consensus 585 ~lr~--iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl 622 (767)
+.+. ++...|-.|.+-.++...++.+++ .++|.+|..
T Consensus 136 ~a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 136 LVRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2222 333445555566666688888875 578988765
No 276
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=72.35 E-value=10 Score=34.18 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHHHH
Q 004227 652 GDRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSHVC 723 (767)
Q Consensus 652 G~dvtIva~G----s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~-~~~~~vVvvEe~~~GGlgs~I~ 723 (767)
..+|+|.+.| +....|..|.+.|++.|++...+|+.. .|--.+.+.+.. ..+-..|+++....||+.....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-DPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHH
Confidence 4689999988 578999999999999999999999852 121122333332 2233456788767899886554
No 277
>PRK06154 hypothetical protein; Provisional
Probab=72.06 E-value=28 Score=41.46 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=69.7
Q ss_pred hhhhhCCCcEEeccc--cHHHHHHHHHHHHhcC-CeeEEee--chhHHHhHHHHHHHhhhcCCCCEEEEee-cCCccCCC
Q 004227 500 YFQKRFPDRCFDVGI--AEQHAVTFAAGLASEG-VKPFCAI--YSSFLQRGYDQVVHDVDLQKLPVRFAMD-RAGLVGAD 573 (767)
Q Consensus 500 ~f~~~~P~R~~d~GI--aE~~~vg~AaGlA~~G-~rP~~~t--ys~Fl~ra~dQi~~~~a~~~lpViiv~~-~~Gl~G~d 573 (767)
.+.-..|.+|+..+- +=-..+..|.|++++- -++++++ -..|+.-.-| +..+...++|+++++. ..++....
T Consensus 415 ~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~E--L~Ta~r~~lpi~~vV~NN~~yg~~~ 492 (565)
T PRK06154 415 FYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMD--FETAVRERIPILTILLNNFSMGGYD 492 (565)
T ss_pred hCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH--HHHHHHhCCCeEEEEEECCccceee
Confidence 344456889987542 1112445566666652 4566665 4556544323 3556778999877764 44431000
Q ss_pred ------CCCCCC---hhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh--hCCCCEEEEec
Q 004227 574 ------GPTHCG---AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV--IDDRPSCFRFP 623 (767)
Q Consensus 574 ------G~TH~~---~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~--~~~~P~~irl~ 623 (767)
+..+.. ..|..-++.--|+.-+.-.+.+|+..+++.|+. ..++|++|-..
T Consensus 493 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev~ 553 (565)
T PRK06154 493 KVMPVSTTKYRATDISGDYAAIARALGGYGERVEDPEMLVPALLRALRKVKEGTPALLEVI 553 (565)
T ss_pred hhhhhhcCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEEE
Confidence 111110 113333333236777788899999999999986 25779887653
No 278
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=70.75 E-value=41 Score=45.33 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=73.2
Q ss_pred cEEeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~rP~~~--tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++. ..-|++++-+|.|+|..--+|-++ |..+....++--+ ..+...+.|++++...... .+. ..+|.+++.
T Consensus 341 ~~i~-~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av-~eA~~d~vPlLvItgd~p~~~~~~--ga~Q~iDq~ 416 (1655)
T PLN02980 341 TCIA-CFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAV-VEASQDFVPLLLLTADRPPELQDA--GANQAINQV 416 (1655)
T ss_pred eEEe-ccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhcC--CCCcccchh
Confidence 5554 499999999999999975555444 4666665555554 3456789999998644332 232 237777777
Q ss_pred HHhhcCCCcEE--EecCCH-------HHHHHHHHHHHhhCCCCEEEEecC
Q 004227 584 TFMSCLPNMVV--MAPSDE-------AELMHMVATAAVIDDRPSCFRFPR 624 (767)
Q Consensus 584 a~lr~iPg~~V--~~Psd~-------~E~~~~l~~A~~~~~~P~~irl~r 624 (767)
.+++.+-.+.. -.|.+. ..+..+++.|..-..+|++|-+|.
T Consensus 417 ~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 417 NHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 88887665443 345552 344455555543345899999984
No 279
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=67.17 E-value=19 Score=30.89 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=46.6
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc-cCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 651 EGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 651 eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~-~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
+..+|+|.+ -+....|.+|.+.|++.|+..+.+|+.. .-+.+.+.+... .+=.+|+++....||+. .|..+|
T Consensus 6 ~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~--~~~~~~~~~~~g~~~vP~i~i~g~~igG~~-~l~~~l 78 (79)
T TIGR02190 6 KPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGN--DARGRSLRAVTGATTVPQVFIGGKLIGGSD-ELEAYL 78 (79)
T ss_pred CCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCC--ChHHHHHHHHHCCCCcCeEEECCEEEcCHH-HHHHHh
Confidence 445677666 4888999999999999999999999853 112233433322 22234566655689984 444444
No 280
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=66.03 E-value=78 Score=37.38 Aligned_cols=145 Identities=12% Similarity=0.073 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhCCCEEEEeccccCCc-ChhhhhhhCCCcEEeccccHHHHHHH----HHHHHhcC-CeeEEee--chhHH
Q 004227 471 FAESLIKEAETDDKIVAIHAAMGGGT-GLNYFQKRFPDRCFDVGIAEQHAVTF----AAGLASEG-VKPFCAI--YSSFL 542 (767)
Q Consensus 471 f~~aL~~~~~~d~~ivvi~aD~~gs~-gl~~f~~~~P~R~~d~GIaE~~~vg~----AaGlA~~G-~rP~~~t--ys~Fl 542 (767)
+.+.|.+.+.+ +.+++. |.|... ....+.-..|.+++..+ -.+.+|. |.|++++. -++++++ -..|+
T Consensus 361 ~~~~l~~~l~~-~~iiv~--d~G~~~~~~~~~~~~~~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~ 435 (539)
T TIGR03393 361 FWQTLQTFLRP-GDIILA--DQGTSAFGAADLRLPADVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQ 435 (539)
T ss_pred HHHHHHHhcCC-CCEEEE--ccCchhhhhhhccCCCCCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHH
Confidence 44555555543 344433 444322 11122222355777544 3455554 55555542 3455555 45565
Q ss_pred HhHHHHHHHhhhcCCCCEEEEe-ecCCcc--C-CCC--CCCCC--hhHHHHhhcCCCc----EEEecCCHHHHHHHHHHH
Q 004227 543 QRGYDQVVHDVDLQKLPVRFAM-DRAGLV--G-ADG--PTHCG--AFDVTFMSCLPNM----VVMAPSDEAELMHMVATA 610 (767)
Q Consensus 543 ~ra~dQi~~~~a~~~lpViiv~-~~~Gl~--G-~dG--~TH~~--~~Dla~lr~iPg~----~V~~Psd~~E~~~~l~~A 610 (767)
.-.-| +..+...++|++++. ...++. - ..+ ..+.. ..|..-++.--|. .-+.-.+..|+...++.+
T Consensus 436 m~~~E--L~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a 513 (539)
T TIGR03393 436 LTIQE--LGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKV 513 (539)
T ss_pred hHHHH--HHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHH
Confidence 44322 356677899977766 445531 0 001 11111 1122222221233 356778999999999999
Q ss_pred HhhCCCCEEEEec
Q 004227 611 AVIDDRPSCFRFP 623 (767)
Q Consensus 611 ~~~~~~P~~irl~ 623 (767)
++ .++|++|-..
T Consensus 514 ~~-~~~p~liev~ 525 (539)
T TIGR03393 514 AA-HERLSLIEVV 525 (539)
T ss_pred hc-cCCeEEEEEE
Confidence 86 5789988654
No 281
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=65.99 E-value=34 Score=40.89 Aligned_cols=101 Identities=12% Similarity=0.155 Sum_probs=60.4
Q ss_pred HHHHHHHHHhc-----C-CeeEEeechhHH-H--hHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCC-----CChhHH-
Q 004227 519 AVTFAAGLASE-----G-VKPFCAIYSSFL-Q--RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGAFDV- 583 (767)
Q Consensus 519 ~vg~AaGlA~~-----G-~rP~~~tys~Fl-~--ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH-----~~~~Dl- 583 (767)
.+++|.|+|++ + -++++++..+.- + ..++.+ +.++..+.|++++.++.++ +-++++. ....++
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal-~~A~~~~~nli~IvdnN~~-~i~~~~~~~~~~~~~~~~~ 199 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEAL-NNAGDLKSDLIVILNDNEM-SISPNVGALSNYLARLRSS 199 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHH-HHHHhhCCCEEEEEECCCC-cCCCcchhhhhhhccccHH
Confidence 45666776664 1 345666654432 2 445554 4566677999999888775 3344432 111221
Q ss_pred HHhhcCCCcEEEe---cCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 584 TFMSCLPNMVVMA---PSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 584 a~lr~iPg~~V~~---Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
..++.. |+.++. -.|..++...++.+.. .++|++|...
T Consensus 200 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~~ 240 (580)
T PRK05444 200 TLFEEL-GFNYIGPIDGHDLDALIETLKNAKD-LKGPVLLHVV 240 (580)
T ss_pred HHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 234443 666554 4788999999988865 4689988653
No 282
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=64.59 E-value=16 Score=30.36 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=42.9
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc-c-CCEEEEEcCCCCCCHHHHH
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-E-HEILITVEEGSVGGFGSHV 722 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~-~-~~~vVvvEe~~~GGlgs~I 722 (767)
++|.+. +....|.+|.+.|++.|+..+.+|+..- |-..+.+.+... . .-..|+++....||+....
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~ 69 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLY 69 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHH
Confidence 444443 6678999999999999999999998743 211122222222 1 2346678877789987543
No 283
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=64.38 E-value=54 Score=31.56 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCeEEEEE-cCCcccCcchHHHHHHHHHcCCCEEEEEECCC
Q 004227 257 TSISAGLGMAVARDILGKNNNVISVI-GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (767)
Q Consensus 257 ~~ls~A~G~AlA~kl~g~~~~Vv~vi-GDGal~eG~~~EAln~A~~~~~nli~Iv~dN~ 314 (767)
.+..+|.|.+.+. .+.-++++. |=|.++ ..+++..|...+.|+++|.-+..
T Consensus 45 ~A~~~A~g~~~~~----~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~ 96 (155)
T cd07035 45 GAVGMADGYARAT----GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRP 96 (155)
T ss_pred HHHHHHHHHHHHH----CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCc
Confidence 3456666666653 222233344 566554 66899999988999999986654
No 284
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=63.51 E-value=70 Score=31.94 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=23.5
Q ss_pred Hhhc-CCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEE
Q 004227 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHV 426 (767)
Q Consensus 387 fea~-G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v 426 (767)
++.+ |+.++-| -|..+...+++.+.+ .++|+++.-
T Consensus 130 lr~iPg~~V~~P---sd~~e~~~~l~~~~~--~~~P~~~~e 165 (167)
T cd07036 130 FAHIPGLKVVAP---STPYDAKGLLKAAIR--DDDPVIFLE 165 (167)
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--CCCcEEEEe
Confidence 3444 7776666 466677777777766 468998763
No 285
>PLN02790 transketolase
Probab=63.42 E-value=49 Score=40.30 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=51.7
Q ss_pred hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCC-hhHH-HHhhcCCCcEEEec----CCHHHHHHHHHHHHhhCCC
Q 004227 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAP----SDEAELMHMVATAAVIDDR 616 (767)
Q Consensus 544 ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~-~~Dl-a~lr~iPg~~V~~P----sd~~E~~~~l~~A~~~~~~ 616 (767)
.++|.+ +.++.+++| ++++.+.-++ .-+|++... .+++ ..++.+ |+.++.+ .|..++..+++.|.+..++
T Consensus 153 ~~~EAl-~~A~~~~L~nli~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~ 229 (654)
T PLN02790 153 ISNEAA-SLAGHWGLGKLIVLYDDNHI-SIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKEAKAVTDK 229 (654)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEecCCc-cccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 456664 677888987 7777777664 334454322 3333 345665 8999988 5777888888887543578
Q ss_pred CEEEEec
Q 004227 617 PSCFRFP 623 (767)
Q Consensus 617 P~~irl~ 623 (767)
|++|...
T Consensus 230 P~lI~~~ 236 (654)
T PLN02790 230 PTLIKVT 236 (654)
T ss_pred eEEEEEE
Confidence 9998664
No 286
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=62.83 E-value=37 Score=29.21 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=39.8
Q ss_pred cEEEEEech-hHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCC
Q 004227 654 RVAILGYGS-IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (767)
Q Consensus 654 dvtIva~Gs-~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (767)
++.|++.+. ....|++.++.|++.|+.+.+ |.+. +.+....-..-..+.+.+|++.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcc
Confidence 567777765 447899999999999999977 5443 444444333334556788888754
No 287
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=60.71 E-value=17 Score=33.93 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=38.8
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC
Q 004227 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (767)
Q Consensus 654 dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~ 704 (767)
|++|.+. ..+..|.+|.+.|+++|+..+++|+.. .|++.+.+++.++..
T Consensus 1 ~i~iy~~-p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 1 DIIFYEK-PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 3455444 456789999999999999999999984 788998888877654
No 288
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=60.49 E-value=66 Score=39.07 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHH-HHHHHcCCCEEEEEECCCC
Q 004227 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM-NNAGFLDANLIVVLNDNKQ 315 (767)
Q Consensus 259 ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nli~Iv~dN~~ 315 (767)
++.|.|||++ | -+++++.+. .+.. .+++.+ +.++..++|++++.+.-+.
T Consensus 374 vg~AaGlA~~----G-~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~ 423 (641)
T PRK12571 374 VTFAAGLAAA----G-LKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGL 423 (641)
T ss_pred HHHHHHHHHC----C-CEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCc
Confidence 6677777762 2 344555544 4554 788887 5588889999999977764
No 289
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=59.91 E-value=40 Score=30.53 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=47.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh----ccCCEEEEEcCCCCCCHHHH
Q 004227 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA----NEHEILITVEEGSVGGFGSH 721 (767)
Q Consensus 653 ~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~----~~~~~vVvvEe~~~GGlgs~ 721 (767)
.+|+|.+. +....|.+|.+.|++.|+..+++|+-. .|--.+....+. ..+=..|++.....||+...
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENV 78 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHH
Confidence 56888887 778999999999999999999999873 232223322332 12335677887778999763
No 290
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=59.90 E-value=40 Score=28.07 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=44.8
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc-cCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 654 dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~-~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
+|+|.+. +....|.+|.+.|++.|+..+.+|+..- + +.+.+.+... .+=..|+++....||+. .|.++|
T Consensus 2 ~v~lys~-~~Cp~C~~ak~~L~~~~i~~~~~~v~~~-~-~~~~~~~~~g~~~vP~ifi~g~~igg~~-~l~~~l 71 (72)
T cd03029 2 SVSLFTK-PGCPFCARAKAALQENGISYEEIPLGKD-I-TGRSLRAVTGAMTVPQVFIDGELIGGSD-DLEKYF 71 (72)
T ss_pred eEEEEEC-CCCHHHHHHHHHHHHcCCCcEEEECCCC-h-hHHHHHHHhCCCCcCeEEECCEEEeCHH-HHHHHh
Confidence 4555554 7789999999999999999999998632 2 3334433322 22345677766678864 444443
No 291
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=59.84 E-value=99 Score=30.19 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHH-HHHHcCCCEEEEEECCC
Q 004227 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMN-NAGFLDANLIVVLNDNK 314 (767)
Q Consensus 259 ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln-~A~~~~~nli~Iv~dN~ 314 (767)
++.|.|+|+ .| -+.+++.. ..+. ..++|.+. .++.++.|++++....+
T Consensus 52 vg~A~GlA~----~G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g 100 (156)
T cd07033 52 VGIAAGLAL----HG-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAG 100 (156)
T ss_pred HHHHHHHHH----CC-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCc
Confidence 556666665 34 34444444 3332 46788877 77888899999998665
No 292
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=59.12 E-value=38 Score=37.80 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcC-CeeEEeechh--HHHh-HHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCC--ChhHHHHhh---c
Q 004227 518 HAVTFAAGLASEG-VKPFCAIYSS--FLQR-GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDVTFMS---C 588 (767)
Q Consensus 518 ~~vg~AaGlA~~G-~rP~~~tys~--Fl~r-a~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~--~~~Dla~lr---~ 588 (767)
.++|+|.|..+.+ -+++++++.+ |.+- ..+. ++.++..++||++++...++ +...+++. ...|++-.. .
T Consensus 130 ~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~Ea-L~tA~~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~a~a~G 207 (341)
T TIGR03181 130 HAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEA-LNFAGVFKAPVVFFVQNNQW-AISVPRSKQTAAPTLAQKAIAYG 207 (341)
T ss_pred HHHhHHHHHHhhCCCCEEEEEecCCccccChHHHH-HHHHhccCCCEEEEEECCCC-ccccchhhhhCCcCHHHHHhhCC
Confidence 4444444444444 3556666544 5432 2343 46778999999999876664 21112211 122332222 2
Q ss_pred CCCcEEEecCCHHHHHH----HHHHHHhhCCCCEEEEe
Q 004227 589 LPNMVVMAPSDEAELMH----MVATAAVIDDRPSCFRF 622 (767)
Q Consensus 589 iPg~~V~~Psd~~E~~~----~l~~A~~~~~~P~~irl 622 (767)
+|++.| .-.|..++.. +++.+.. .++|++|-.
T Consensus 208 ~~~~~V-dg~d~~av~~a~~~A~~~a~~-~~gP~lIev 243 (341)
T TIGR03181 208 IPGVQV-DGNDVLAVYAVTKEAVERARS-GGGPTLIEA 243 (341)
T ss_pred CCEEEE-CCCCHHHHHHHHHHHHHHHHc-CCCCEEEEE
Confidence 454443 3344444344 4444433 568998855
No 293
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=58.92 E-value=67 Score=38.84 Aligned_cols=49 Identities=12% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHH-HHHHHcCCCEEEEEECCCC
Q 004227 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM-NNAGFLDANLIVVLNDNKQ 315 (767)
Q Consensus 259 ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nli~Iv~dN~~ 315 (767)
++.|.|||++ ..+.|+.+ -+.+.. -++|.+ +.++..++|++++.+..+.
T Consensus 365 vg~AaGlA~~------G~~Pvv~~-~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~ 414 (617)
T TIGR00204 365 VTFAAGMAIE------GYKPFVAI-YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGI 414 (617)
T ss_pred HHHHHHHHHC------CCEEEEEe-cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 6677777752 33444444 556654 677776 5577888999999988875
No 294
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=58.86 E-value=76 Score=30.71 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCC
Q 004227 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~ 314 (767)
+..+|.|.+.+ +.. .+++.-|-|..+ ...+|..|.....|+++|+-+-.
T Consensus 53 A~~~A~g~~r~----~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 53 AAEAAIGASAA----GAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred HHHHHHHHHhh----CCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCC
Confidence 34555555543 323 455566888876 66788888887899999996644
No 295
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=57.56 E-value=90 Score=32.57 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=61.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCC
Q 004227 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGIL 732 (767)
Q Consensus 653 ~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~ 732 (767)
.++.||--=|.++. |+.+| |....-+.+.++-+-+.+.++.++..+.+++++-+...+ -.+|+.+|.++|+.
T Consensus 95 ~~v~iIPgiSS~q~---a~ARl---g~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~~~--P~~IA~~L~~~G~~ 166 (210)
T COG2241 95 EEVEIIPGISSVQL---AAARL---GWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDDFG--PAEIAKLLTENGIG 166 (210)
T ss_pred cceEEecChhHHHH---HHHHh---CCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCCCC--HHHHHHHHHhCCCC
Confidence 46777764444443 23333 443333333334477788888887777777777765533 56899999999986
Q ss_pred CCCce-EEEEecCCcccccccccccCcc
Q 004227 733 DGPLK-VFIFSLIQKLETDCRLLSFPSP 759 (767)
Q Consensus 733 d~~~k-~~~~gl~D~f~~~~~~~~~~~~ 759 (767)
+.++- +.+++-+|+=+.....-.+..+
T Consensus 167 ~~~~~VlE~L~~~~Eri~~~~~~~~~~~ 194 (210)
T COG2241 167 DSRVTVLENLGYPDERITDGTAEDIAAE 194 (210)
T ss_pred CceEEEEcccCCCchhhhcCchhhhccc
Confidence 44433 3588999986666555554444
No 296
>PRK10638 glutaredoxin 3; Provisional
Probab=57.51 E-value=26 Score=30.24 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=40.8
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh-ccCCEEEEEcCCCCCCHHH
Q 004227 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGS 720 (767)
Q Consensus 654 dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~-~~~~~vVvvEe~~~GGlgs 720 (767)
+++|.+. .....|.+|.+.|++.|+..+++|+..-... .+.+.+.. ..+-..|+++....||+.+
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~g~~igG~~~ 68 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFIDAQHIGGCDD 68 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 3555553 4567999999999999999999998531111 12233322 2222456677656899954
No 297
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=56.56 E-value=1.2e+02 Score=29.92 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHH-HcCCCEEEEEECCC
Q 004227 256 STSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAG-FLDANLIVVLNDNK 314 (767)
Q Consensus 256 G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~-~~~~nli~Iv~dN~ 314 (767)
+.+.++|.|.+++ ..+.++|+.+=|- |-..-++..|. ....||++|+-.-+
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg 95 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRG 95 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4456666666643 4566788888883 35667777888 67799999995554
No 298
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=56.46 E-value=40 Score=36.86 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=58.9
Q ss_pred HHHHHHHHhc----CCeeEEe-echhHH---HhHHHHHHHhhhcCCCCEEEEeecCCc-cC---CCCCCCCChhHHHHhh
Q 004227 520 VTFAAGLASE----GVKPFCA-IYSSFL---QRGYDQVVHDVDLQKLPVRFAMDRAGL-VG---ADGPTHCGAFDVTFMS 587 (767)
Q Consensus 520 vg~AaGlA~~----G~rP~~~-tys~Fl---~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G---~dG~TH~~~~Dla~lr 587 (767)
+..|+|.|++ |.+.++. ++.+-. -..+|. +|.++..++||++++..-++ .+ ....+-..+.|.+-.-
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Ea-lN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~ 185 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEA-LNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGY 185 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHH-HHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGT
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHH-HHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhcc
Confidence 4555566553 5444443 343332 233444 48889999999999966554 11 1122222344544445
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEe
Q 004227 588 CLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 588 ~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl 622 (767)
.+|+++ +.=.|+.++...++.|++ ..++|++|-.
T Consensus 186 gip~~~-VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 186 GIPGIR-VDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp TSEEEE-EETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred CCcEEE-ECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 577664 477889999888888886 3467988754
No 299
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=55.86 E-value=45 Score=36.20 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=48.5
Q ss_pred eeEEeec--hhHHHh-HHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCC--ChhHHHHhh---cCCCcEEEecCCHHHH
Q 004227 532 KPFCAIY--SSFLQR-GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDVTFMS---CLPNMVVMAPSDEAEL 603 (767)
Q Consensus 532 rP~~~ty--s~Fl~r-a~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~--~~~Dla~lr---~iPg~~V~~Psd~~E~ 603 (767)
+++++++ ..|.+- .++. ++.++..++|+++++...++ +...++.. ...|++-.. .+|++. +.=.|..++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~-l~~A~~~~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~~-Vdg~d~~~v 203 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEA-LNFAALWKLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGIR-VDGNDVLAV 203 (293)
T ss_pred CEEEEEeCCCccccchHHHH-HHHHHhhCCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEEE-ECCCCHHHH
Confidence 4455554 335432 2343 46778899999999876664 32222211 122332222 244432 233467788
Q ss_pred HHHHHHHHh---hCCCCEEEEe
Q 004227 604 MHMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 604 ~~~l~~A~~---~~~~P~~irl 622 (767)
...++.|++ ..++|++|-.
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 887877764 3467988755
No 300
>PTZ00089 transketolase; Provisional
Probab=55.16 E-value=82 Score=38.41 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=51.6
Q ss_pred hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCC-hhHH-HHhhcCCCcEEEecC----CHHHHHHHHHHHHhhCCC
Q 004227 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAPS----DEAELMHMVATAAVIDDR 616 (767)
Q Consensus 544 ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~-~~Dl-a~lr~iPg~~V~~Ps----d~~E~~~~l~~A~~~~~~ 616 (767)
.++|.+ +.++..++| ++++.+.-++ .-+|+++-. .+++ ..++.+ ||.++.+. |..++..+++.+....++
T Consensus 164 ~~~EAl-~~A~~~~L~nLi~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~ 240 (661)
T PTZ00089 164 VSQEAL-SLAGHLGLEKLIVLYDDNKI-TIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIEEAKKSKGK 240 (661)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEECCCc-ccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 556665 667888986 6777777774 445666532 2332 356666 99999884 677777777777554468
Q ss_pred CEEEEec
Q 004227 617 PSCFRFP 623 (767)
Q Consensus 617 P~~irl~ 623 (767)
|++|...
T Consensus 241 P~~I~~~ 247 (661)
T PTZ00089 241 PKLIIVK 247 (661)
T ss_pred cEEEEEE
Confidence 9998764
No 301
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=54.66 E-value=22 Score=33.08 Aligned_cols=41 Identities=44% Similarity=0.682 Sum_probs=22.8
Q ss_pred HhhcCCeEee-ccCCCCH-HHHHHHHHHhHcCCCCCcEEEEEEe
Q 004227 387 FEELGLYYIG-PVDGHNV-EDLVTIFQRVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 387 fea~G~~~i~-~vDGhdi-~~l~~al~~a~~~~~~~P~lI~v~T 428 (767)
.+++|+.|+. ||++.++ ++-.++|.++.+. .++|+++||+|
T Consensus 53 a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~s 95 (110)
T PF04273_consen 53 AEALGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRS 95 (110)
T ss_dssp HHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SC
T ss_pred HHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 6788877643 6766555 3444555555543 47899999986
No 302
>PRK05899 transketolase; Reviewed
Probab=52.70 E-value=1.3e+02 Score=36.40 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=53.8
Q ss_pred eeEEeec--hhHHH-hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCC-ChhHH-HHhhcCCCcEEEecC--CHHHH
Q 004227 532 KPFCAIY--SSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFDV-TFMSCLPNMVVMAPS--DEAEL 603 (767)
Q Consensus 532 rP~~~ty--s~Fl~-ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~-~~~Dl-a~lr~iPg~~V~~Ps--d~~E~ 603 (767)
+.++++. ..|.. ..+|.+ +.++..++| ++++.+..++ +.++++.. ...|+ ..++.+ |+.++.-. |..++
T Consensus 151 ~~v~~v~GDG~~~~g~~~Eal-~~A~~~~L~~li~v~dnN~~-~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l 227 (624)
T PRK05899 151 HYTYVLCGDGDLMEGISHEAC-SLAGHLKLGNLIVIYDDNRI-SIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAI 227 (624)
T ss_pred CeEEEEECcchhhchHHHHHH-HHHHHhCCCCEEEEEECCCC-cccccccccccccHHHHhccC-CCeEEEECCCCHHHH
Confidence 3455553 33432 235544 556778987 6666777664 33333322 12343 344544 78877766 89999
Q ss_pred HHHHHHHHhhCCCCEEEEec
Q 004227 604 MHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 604 ~~~l~~A~~~~~~P~~irl~ 623 (767)
..+++.+.+ .++|++|...
T Consensus 228 ~~al~~a~~-~~~P~vI~v~ 246 (624)
T PRK05899 228 DAAIEEAKA-STKPTLIIAK 246 (624)
T ss_pred HHHHHHHHh-cCCCEEEEEE
Confidence 999999875 4689988664
No 303
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=50.70 E-value=41 Score=33.25 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=43.0
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcC
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE 712 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe 712 (767)
++|++-|..-....++++.|++.||.+=.|-+. ..|.+.++.++.+-..++++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 556777766677888999999999876666654 4688999999877788888875
No 304
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=49.86 E-value=1.2e+02 Score=37.11 Aligned_cols=50 Identities=8% Similarity=0.266 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHH-HHHHHHcCCCEEEEEECCCC
Q 004227 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA-MNNAGFLDANLIVVLNDNKQ 315 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EA-ln~A~~~~~nli~Iv~dN~~ 315 (767)
.++.|.|||+. | -+++++++. .+.. -+++- .+.++..++|++++++..+.
T Consensus 410 ~vg~AaGLA~~----G-~kPvv~~fs--~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~ 460 (677)
T PLN02582 410 AVTFAAGLACE----G-LKPFCAIYS--SFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGL 460 (677)
T ss_pred HHHHHHHHHHC----C-CeEEEEecH--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 35667777663 4 455555543 4543 56774 47778889999999988775
No 305
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=49.71 E-value=65 Score=29.99 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=39.7
Q ss_pred CcEEEEEec--h-hHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCC
Q 004227 653 DRVAILGYG--S-IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (767)
Q Consensus 653 ~dvtIva~G--s-~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (767)
.++.|++.+ . ....+++.++.|++.|+.+.+ |.+ +.+....-.....+.+.++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~-d~~--~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKY-DDS--GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEE-eCC--CCHHHHHHHhHhcCCCEEEEECcC
Confidence 478888888 4 457888889999999999877 443 555444333333456777777754
No 306
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=48.85 E-value=97 Score=26.69 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=45.4
Q ss_pred EEEEEechhHHHHHHHHHHHhc-----CCCcEEEEEcccCCCCcHHHHHHHhc---cCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 655 VAILGYGSIVQQCVLAANMLKS-----QDISVTVADARFCKPLDTDLIRQLAN---EHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~-----~GI~v~VIdl~slkPlD~e~i~~~~~---~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
++|.+. +....|.+|.+.|++ .|+..+.+|+.. .+...+.+.+... .+=..|+++....||+.. |.+++
T Consensus 3 v~iy~~-~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~-~~~~~ 79 (85)
T PRK11200 3 VVIFGR-PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKHIGGCTD-FEAYV 79 (85)
T ss_pred EEEEeC-CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHH-HHHHH
Confidence 444443 557888888888887 799999999874 2323444555443 233456677666899864 44444
Q ss_pred Hh
Q 004227 727 TL 728 (767)
Q Consensus 727 ~~ 728 (767)
.+
T Consensus 80 ~~ 81 (85)
T PRK11200 80 KE 81 (85)
T ss_pred HH
Confidence 44
No 307
>PRK12754 transketolase; Reviewed
Probab=48.84 E-value=1.2e+02 Score=37.22 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=48.0
Q ss_pred hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCCh-hHH-HHhhcCCCcEEEe---cCCHHHHHHHHHHHHhhCCCC
Q 004227 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCGA-FDV-TFMSCLPNMVVMA---PSDEAELMHMVATAAVIDDRP 617 (767)
Q Consensus 544 ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~~-~Dl-a~lr~iPg~~V~~---Psd~~E~~~~l~~A~~~~~~P 617 (767)
..+|.+ +.++..+|| ++++.+.-++ .-+|+|.... +|+ ..+++. ||.++. =.|..++..++..|....++|
T Consensus 162 ~~~EA~-~~A~~~kL~nLi~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~P 238 (663)
T PRK12754 162 ISHEVC-SLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDKP 238 (663)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCCC
Confidence 355654 667889998 5677777774 4566665322 333 234444 777654 345666666666664445789
Q ss_pred EEEEecC
Q 004227 618 SCFRFPR 624 (767)
Q Consensus 618 ~~irl~r 624 (767)
++|....
T Consensus 239 t~I~~~T 245 (663)
T PRK12754 239 SLLMCKT 245 (663)
T ss_pred EEEEEEe
Confidence 9987653
No 308
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=47.84 E-value=1.1e+02 Score=37.05 Aligned_cols=49 Identities=10% Similarity=0.285 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHH-HHHHHcCCCEEEEEECCCC
Q 004227 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM-NNAGFLDANLIVVLNDNKQ 315 (767)
Q Consensus 259 ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAl-n~A~~~~~nli~Iv~dN~~ 315 (767)
++.|.|||+. | -+++++++ +.+.. -+++-+ +.++..++|++++++..+.
T Consensus 412 Vg~AaGLA~~----G-~rPvv~~f--s~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~ 461 (641)
T PLN02234 412 VTFAAGLACE----G-LKPFCTIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAIDRAGL 461 (641)
T ss_pred HHHHHHHHHC----C-CeEEEEeh--HHHHH-HHHHHHHHHHhhcCCCEEEEEeCCcc
Confidence 5667777663 3 34444444 34433 566655 5667888999999988774
No 309
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=46.84 E-value=2.4e+02 Score=28.10 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=25.0
Q ss_pred Hhhc-CCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEE
Q 004227 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVV 427 (767)
Q Consensus 387 fea~-G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~ 427 (767)
+..+ |+.++.| -|..++..+++.+.+.+.++|++|...
T Consensus 133 ~~~iPg~~v~~P---sd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 133 LRSIPGMKVVVP---SDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHTSTTEEEEE----SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccccccccC---CCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 4554 7777767 466777777777665334789988764
No 310
>PRK12753 transketolase; Reviewed
Probab=46.53 E-value=1.5e+02 Score=36.24 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=48.2
Q ss_pred hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCCh-hHH-HHhhcCCCcEEEecCC---HHHHHHHHHHHHhhCCCC
Q 004227 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCGA-FDV-TFMSCLPNMVVMAPSD---EAELMHMVATAAVIDDRP 617 (767)
Q Consensus 544 ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~~-~Dl-a~lr~iPg~~V~~Psd---~~E~~~~l~~A~~~~~~P 617 (767)
..+|.+ +.++..++| ++++.+.-++ .-+|+++... +++ ..++.. ||.++.+.| ..++..++..|....++|
T Consensus 162 ~~~EA~-~~A~~~kL~nLi~ivd~N~~-~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P 238 (663)
T PRK12753 162 ISHEVC-SLAGTLGLGKLIGFYDHNGI-SIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEAQSVKDKP 238 (663)
T ss_pred HHHHHH-HHHHHHCCCCEEEEEECCCC-cCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHHHHCCCCe
Confidence 456654 677889997 6767777764 3455554321 333 345555 888876544 456666666665445789
Q ss_pred EEEEecC
Q 004227 618 SCFRFPR 624 (767)
Q Consensus 618 ~~irl~r 624 (767)
++|....
T Consensus 239 ~~I~~~T 245 (663)
T PRK12753 239 SLIICRT 245 (663)
T ss_pred EEEEEEE
Confidence 9987653
No 311
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=45.97 E-value=40 Score=28.50 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHHH
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSHV 722 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~-~~~~~vVvvEe~~~GGlgs~I 722 (767)
.....|.+|.+.|++.|+..+.+|+..- |-..+.+.+.. ..+-..|+++....||+.+..
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~ 67 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLY 67 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHH
Confidence 5678999999999999999999998632 21122333322 122356778877789988654
No 312
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=45.46 E-value=2.5e+02 Score=33.60 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEEC
Q 004227 274 KNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLND 312 (767)
Q Consensus 274 ~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~d 312 (767)
.|=.|.++-+|-+.+ -++.||+.+|..-+-|+++-+|-
T Consensus 225 tDIvVLVVAadDGVm-pQT~EaIkhAk~A~VpiVvAinK 262 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVM-PQTLEAIKHAKSANVPIVVAINK 262 (683)
T ss_pred ccEEEEEEEccCCcc-HhHHHHHHHHHhcCCCEEEEEec
Confidence 466677777766665 47999999999988888877744
No 313
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=44.61 E-value=85 Score=26.38 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=36.3
Q ss_pred cEEEEEechh-HHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh-ccCCEEEEEcC
Q 004227 654 RVAILGYGSI-VQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEE 712 (767)
Q Consensus 654 dvtIva~Gs~-v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~-~~~~~vVvvEe 712 (767)
++.|++.+.. ...|++.++.|++.|+.+.+.... +.++ +.+.... .....++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~-~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLK-KQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHH-HHHHHHHHcCCCEEEEEcH
Confidence 6778877764 468889999999999988764432 3333 3344333 33466677764
No 314
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=44.20 E-value=68 Score=28.01 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=39.8
Q ss_pred cEEEEEech----hHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcC
Q 004227 654 RVAILGYGS----IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE 712 (767)
Q Consensus 654 dvtIva~Gs----~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe 712 (767)
+++|+..|. ....|.+.++.|++.|+.+.+-+ . -..+....-.....+.+.++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~-~-~~~~~k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD-S-DKSLGKQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES-S-SSTHHHHHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-C-CCchhHHHHHHhhcCCeEEEEECc
Confidence 478888888 44788999999999999987776 3 334444333333456677777764
No 315
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=43.65 E-value=59 Score=32.53 Aligned_cols=53 Identities=25% Similarity=0.456 Sum_probs=37.3
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEc
Q 004227 651 EGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVE 711 (767)
Q Consensus 651 eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvE 711 (767)
+|++++||+.|.++... +++.|.++|.++.+++-+ .+.+.+.++..+.||+.-
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~------~~~l~~~l~~aDiVIsat 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSK------TKNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECC------chhHHHHHhhCCEEEEcC
Confidence 46789999999876542 456677789888888844 245566777777766544
No 316
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=43.19 E-value=98 Score=36.40 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=81.1
Q ss_pred CCEEEEeccccCCcChh--hhhhhCCC-cEEeccccHHHHHHHHHHHHhc-CCeeEEeechhHHHhHHHHHHHhhhcCCC
Q 004227 483 DKIVAIHAAMGGGTGLN--YFQKRFPD-RCFDVGIAEQHAVTFAAGLASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKL 558 (767)
Q Consensus 483 ~~ivvi~aD~~gs~gl~--~f~~~~P~-R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~tys~Fl~ra~dQi~~~~a~~~l 558 (767)
..++.+-.|. .|. +....+|+ |++.+ -.|-++.=.|=|.|.. |.-.++.||...-.-|++-|-.. ---++
T Consensus 20 ~~iFGVPGDy----NL~lLD~i~~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA~NGIAGS-YAE~v 93 (557)
T COG3961 20 KSIFGVPGDY----NLSLLDKIYSVPGLRWVGN-ANELNAAYAADGYARLNGISALVTTFGVGELSALNGIAGS-YAEHV 93 (557)
T ss_pred ceeeeCCCcc----cHHHHHHhhcCCCceeecc-cchhhhhhhhcchhhhcCceEEEEecccchhhhhcccchh-hhhcC
Confidence 3566666563 332 22233444 55544 5799999999999985 88899999998866675544211 12478
Q ss_pred CEEEEeecCCc--cCCCCCCCCChh--HHHHhhcC-CCc----EEEecCC--HHHHHHHHHHHHhhCCCCEEEEecCC
Q 004227 559 PVRFAMDRAGL--VGADGPTHCGAF--DVTFMSCL-PNM----VVMAPSD--EAELMHMVATAAVIDDRPSCFRFPRG 625 (767)
Q Consensus 559 pViiv~~~~Gl--~G~dG~TH~~~~--Dla~lr~i-Pg~----~V~~Psd--~~E~~~~l~~A~~~~~~P~~irl~r~ 625 (767)
||+.+....-- ...+-.-||..- |...+..| -++ ..+.+.+ +.|...++++++. ..+|+||.+|-.
T Consensus 94 pVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~-~~RPvYI~lP~d 170 (557)
T COG3961 94 PVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALK-QRRPVYIGLPAD 170 (557)
T ss_pred CEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHH-hcCCeEEEcchH
Confidence 98887632211 122233455322 21122211 122 1244554 7799999999976 689999999853
No 317
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=43.01 E-value=1.8e+02 Score=33.17 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=57.6
Q ss_pred eEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC---CEEEEEcCCCCCCH---HH
Q 004227 647 RILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH---EILITVEEGSVGGF---GS 720 (767)
Q Consensus 647 ~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~---~~vVvvEe~~~GGl---gs 720 (767)
.++.+|.++.++..|.--..--+- ++..|.++.+++..+=+|+|.+.|++.+++. +.|.++..-.+.|. =.
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~i---a~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEI---AERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHH---HHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 355678899999999887765444 4456999999999999999999999988743 33444432233333 34
Q ss_pred HHHHHHHhcCC
Q 004227 721 HVCHFLTLSGI 731 (767)
Q Consensus 721 ~I~~~l~~~~~ 731 (767)
+|+..+.+.|.
T Consensus 152 ~I~~~~k~~g~ 162 (383)
T COG0075 152 EIAKAAKEHGA 162 (383)
T ss_pred HHHHHHHHcCC
Confidence 56666666654
No 318
>PRK10853 putative reductase; Provisional
Probab=42.85 E-value=40 Score=31.72 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC
Q 004227 663 IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (767)
Q Consensus 663 ~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~ 704 (767)
.+..|.+|.+.|+++|+.++++|+.- .|++.+.+++.++..
T Consensus 9 ~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 9 NCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 45789999999999999999999875 788999888877643
No 319
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=41.51 E-value=2e+02 Score=33.60 Aligned_cols=211 Identities=16% Similarity=0.135 Sum_probs=107.4
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEeccc----c--CCcChhhhhhhCCCcE-EeccccHHHHHHHHHHHHhcC-C-eeE
Q 004227 464 TLTYTQYFAESLIKEAETDDKIVAIHAAM----G--GGTGLNYFQKRFPDRC-FDVGIAEQHAVTFAAGLASEG-V-KPF 534 (767)
Q Consensus 464 ~~s~~~af~~aL~~~~~~d~~ivvi~aD~----~--gs~gl~~f~~~~P~R~-~d~GIaE~~~vg~AaGlA~~G-~-rP~ 534 (767)
..+..+|+.+.|...+....+++.+-+.+ | ...|+..-.+..|++. .--|-+||+|+-.|.++|..- . |-+
T Consensus 6 RlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~ 85 (617)
T COG3962 6 RLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIY 85 (617)
T ss_pred hhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceee
Confidence 35666777777766655444333222111 1 1224544444556654 456889999999999999863 3 333
Q ss_pred Eee--chhHHHhHHHHHHHhhhc---CCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEec--------CCH
Q 004227 535 CAI--YSSFLQRGYDQVVHDVDL---QKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAP--------SDE 600 (767)
Q Consensus 535 ~~t--ys~Fl~ra~dQi~~~~a~---~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~P--------sd~ 600 (767)
.++ ..+....+ +..+++ +++||.++= ..-+ .-..-|--|++||..-. .|---..+.| .-|
T Consensus 86 A~tsSiGPGA~Nm----vTaAalA~~NrlPvLllP-gDvfA~R~PDPVLQQ~E~~~d~-~it~NDcfrPVSRYfDRItRP 159 (617)
T COG3962 86 AVTSSIGPGAANM----VTAAALAHVNRLPVLLLP-GDVFATRQPDPVLQQLEQFGDG-TITTNDCFRPVSRYFDRITRP 159 (617)
T ss_pred EEecccCCcHHHH----HHHHHHHHhhcCceEeec-cchhcccCCChHHHhhhccccC-ceecccccccHHHHhhhcCCH
Confidence 333 33333222 333333 689999873 1111 22234666666663211 1110012333 357
Q ss_pred HHHHHHHHHHHhh-----CCCCEEEEecCCCCccc--ccCCCC-----------CCCCcccCce-eEeec-CCcEEEEEe
Q 004227 601 AELMHMVATAAVI-----DDRPSCFRFPRGNGIGA--VLPPNN-----------KGTPLEIGKG-RILME-GDRVAILGY 660 (767)
Q Consensus 601 ~E~~~~l~~A~~~-----~~~P~~irl~r~~~~~~--~~p~~~-----------~~~~~~igk~-~vl~e-G~dvtIva~ 660 (767)
+++...+..|++- +-+|+.|-++.. .... ++|... ...+.++..+ ..++. -+-++|.+-
T Consensus 160 EQl~sal~rA~~VmTDPA~~GpvTl~l~QD-Vq~eA~Dyp~~FF~~rv~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGG 238 (617)
T COG3962 160 EQLMSALPRAMRVMTDPADCGPVTLALCQD-VQAEAYDYPESFFEKRVWRIRRPPPDERELADAAALIKSAKKPLIVAGG 238 (617)
T ss_pred HHHHHHHHHHHHHhCChhhcCceEEEechh-hhhhhcCCcHHhhhhhhhhccCCCCCHHHHHHHHHHHHhcCCCEEEecC
Confidence 8888888888872 346888887642 1111 122100 0000111111 11222 235666666
Q ss_pred chhHHHHHHHHHHHhc-CCCcE
Q 004227 661 GSIVQQCVLAANMLKS-QDISV 681 (767)
Q Consensus 661 Gs~v~~al~Aa~~L~~-~GI~v 681 (767)
|.....|.++...+.+ .||.+
T Consensus 239 Gv~YS~A~~~L~af~E~~~iPv 260 (617)
T COG3962 239 GVLYSGAREALRAFAETHGIPV 260 (617)
T ss_pred ceeechHHHHHHHHHHhcCCce
Confidence 6666777777666644 46654
No 320
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=41.37 E-value=1.5e+02 Score=29.35 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEEC
Q 004227 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLND 312 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~d 312 (767)
+.-+|-|.|.+. ++-..+++..|=|..+ ..-++..|-..+.||++|.-+
T Consensus 47 A~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~ 95 (162)
T cd07037 47 AAFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTAD 95 (162)
T ss_pred HHHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECC
Confidence 445666666653 3333333334666665 446777777788999999843
No 321
>PRK10026 arsenate reductase; Provisional
Probab=41.30 E-value=57 Score=31.81 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=38.6
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCC
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE 705 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~ 705 (767)
++|..+ ..+..|.+|.+.|+++|+.++++|+.. .|++.+.+++.++..+
T Consensus 4 i~iY~~-p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 4 ITIYHN-PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred EEEEeC-CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 344443 566889999999999999999999875 7888888888776543
No 322
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=40.16 E-value=1.1e+02 Score=34.09 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=47.3
Q ss_pred CeeEEeechh--HHH-hHHHHHHHhhhcCCCCEEEEeecCCc-cCC--CCCCC-CChhHHHHhhcCCCcEEEecCCHHHH
Q 004227 531 VKPFCAIYSS--FLQ-RGYDQVVHDVDLQKLPVRFAMDRAGL-VGA--DGPTH-CGAFDVTFMSCLPNMVVMAPSDEAEL 603 (767)
Q Consensus 531 ~rP~~~tys~--Fl~-ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~--dG~TH-~~~~Dla~lr~iPg~~V~~Psd~~E~ 603 (767)
-+++++++.+ |.+ ..++. ++.++..++||++++...++ .+. ...+. ....+.+-.-.+|++.| .=.|..++
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Ea-ln~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~av 234 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFEC-LNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVLAV 234 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHH-HHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE-eCCCHHHH
Confidence 3566666544 331 12333 36778899999999876663 221 11111 11223232234676655 34466555
Q ss_pred HHHHHHHHh---hCCCCEEEEe
Q 004227 604 MHMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 604 ~~~l~~A~~---~~~~P~~irl 622 (767)
...++.|++ ..++|++|-.
T Consensus 235 ~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 235 REVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHhCCCCEEEEE
Confidence 555555443 2467988754
No 323
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=39.84 E-value=2.2e+02 Score=34.73 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCC
Q 004227 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (767)
Q Consensus 259 ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~ 314 (767)
+++|.|||+. + ..++++ ..-..+.. ..++++..++..++|+++|....+
T Consensus 409 v~~AaGlA~~----g-G~~p~~-~tf~~F~~-r~~~~ir~~a~~~lpV~~v~th~g 457 (653)
T TIGR00232 409 GAIMNGIALH----G-GFKPYG-GTFLMFVD-YARPAIRLAALMKLPVIYVYTHDS 457 (653)
T ss_pred HHHHHHHHHc----C-CCeEEE-EEhHHHHH-HHHHHHHHHHhcCCCEEEEEeCCc
Confidence 5667777763 2 223333 22335554 778999999989999999997665
No 324
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=39.55 E-value=1.1e+02 Score=26.37 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=38.1
Q ss_pred cEEEEEech----hHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcC
Q 004227 654 RVAILGYGS----IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE 712 (767)
Q Consensus 654 dvtIva~Gs----~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe 712 (767)
++.|+..+. ....|++.++.|++.|+.+.+-+ .. +.+....-.....+...++++.+
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHHHHHHHhCCCCEEEEECC
Confidence 577777775 45888889999999999887643 22 45554433333344577888876
No 325
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=39.42 E-value=1.9e+02 Score=28.48 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECC
Q 004227 259 ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDN 313 (767)
Q Consensus 259 ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN 313 (767)
.-+|.|+|.+. ++-..+++..|=|.++ ..-++..|...+.||++|.-+.
T Consensus 51 ~~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~ 99 (164)
T cd07039 51 AFAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQV 99 (164)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCC
Confidence 34566666553 3333344445777766 4467777777789999998443
No 326
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=39.07 E-value=1.5e+02 Score=33.14 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=49.4
Q ss_pred EEeechhHH---HhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCC-ChhHHH-Hhh--cCCCcEEEecCCHHHHHHH
Q 004227 534 FCAIYSSFL---QRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC-GAFDVT-FMS--CLPNMVVMAPSDEAELMHM 606 (767)
Q Consensus 534 ~~~tys~Fl---~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~-~~~Dla-~lr--~iPg~~V~~Psd~~E~~~~ 606 (767)
.++.|.+.. -..||.+ |.+++.+|||+|++-..++ |. |.+|. ..-+.. |.| .|||+.| .=.|.--++.+
T Consensus 190 ~~alYGDGAaNQGQ~fEa~-NMA~LW~LP~IFvCENN~y-GM-GTs~~Rasa~teyykRG~yiPGl~V-dGmdvlaVr~a 265 (394)
T KOG0225|consen 190 CFALYGDGAANQGQVFEAF-NMAALWKLPVIFVCENNHY-GM-GTSAERASASTEYYKRGDYIPGLKV-DGMDVLAVREA 265 (394)
T ss_pred EEEEeccccccchhHHHHh-hHHHHhCCCEEEEEccCCC-cc-CcchhhhhcChHHHhccCCCCceEE-CCcchhhHHHH
Confidence 334477764 2456664 8889999999999966553 22 22222 122222 223 4898765 33455555555
Q ss_pred HHHHHh---hCCCCEEEEe
Q 004227 607 VATAAV---IDDRPSCFRF 622 (767)
Q Consensus 607 l~~A~~---~~~~P~~irl 622 (767)
.++|.+ ..++|.++-+
T Consensus 266 ~KfA~~~~~~g~GPilmE~ 284 (394)
T KOG0225|consen 266 TKFAKKYALEGKGPILMEM 284 (394)
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 665554 2478988744
No 327
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=38.54 E-value=1.4e+02 Score=25.93 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=38.4
Q ss_pred cEEEEEech----hHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCC
Q 004227 654 RVAILGYGS----IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (767)
Q Consensus 654 dvtIva~Gs----~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (767)
.++|+..+. ....|++.++.|++.|+++.+ |.+. +.+....-..-..+.+.++++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccchhHHHhcCCCEEEEECCc
Confidence 467777665 457888999999999999976 5442 344443333334566777777653
No 328
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=38.38 E-value=1.7e+02 Score=32.72 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=48.7
Q ss_pred hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCC-hhHH-HHhhcCCCcEEEec---CCHHHHHHHHHHHHhhCCCC
Q 004227 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAP---SDEAELMHMVATAAVIDDRP 617 (767)
Q Consensus 544 ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~-~~Dl-a~lr~iPg~~V~~P---sd~~E~~~~l~~A~~~~~~P 617 (767)
.++|.+ ..++..+|. ++++.|.-++ ..||++-.. .+|+ .-+++. |+.|+.- .|.+++..++..|-...++|
T Consensus 159 ~~~EA~-~~A~~~~L~nLi~i~D~N~~-q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP 235 (332)
T PF00456_consen 159 SVWEAA-SLAGHYKLDNLIVIYDSNGI-QIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKP 235 (332)
T ss_dssp HHHHHH-HHHHHTT-TTEEEEEEEESE-ETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-
T ss_pred hhHHHH-HHHHHhCCCCEEEEEecCCc-ccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCC
Confidence 345554 455677776 6666677664 456666432 2333 235554 8888776 68888888888886655899
Q ss_pred EEEEecCC
Q 004227 618 SCFRFPRG 625 (767)
Q Consensus 618 ~~irl~r~ 625 (767)
++|....-
T Consensus 236 ~~Ii~~Tv 243 (332)
T PF00456_consen 236 TVIIARTV 243 (332)
T ss_dssp EEEEEEE-
T ss_pred ceeecceE
Confidence 99987543
No 329
>PRK10329 glutaredoxin-like protein; Provisional
Probab=38.05 E-value=62 Score=28.15 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=39.9
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh--c-cCCEEEEEcCCCCCCHHHH
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA--N-EHEILITVEEGSVGGFGSH 721 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~--~-~~~~vVvvEe~~~GGlgs~ 721 (767)
++|.+. .....|..|.+.|++.||..+.+|+.. |.+...++. . ..=.+|++++....||...
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~~~ 67 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLSWSGFRPD 67 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEEEecCCHH
Confidence 555554 566899999999999999999999973 233322221 1 1224566666556777543
No 330
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=37.37 E-value=3.6e+02 Score=30.78 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=31.0
Q ss_pred hHHHHHHHhhhcCCC-CEEEEeecCCccCCCCCCCC---ChhHH-HHhhcCCCcEEEec
Q 004227 544 RGYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC---GAFDV-TFMSCLPNMVVMAP 597 (767)
Q Consensus 544 ra~dQi~~~~a~~~l-pViiv~~~~Gl~G~dG~TH~---~~~Dl-a~lr~iPg~~V~~P 597 (767)
..+|.+ +.++..++ +++++.+..++ ..||+|-. ..+++ .-|+++ ||.|+.-
T Consensus 163 ~vwEA~-~~Ag~~kL~NLivIvD~N~~-qidG~t~~v~~~~e~l~~kf~Af-GW~vi~V 218 (386)
T cd02017 163 ESLGAI-GLAAREKLDNLIFVVNCNLQ-RLDGPVRGNGKIIQELEGIFRGA-GWNVIKV 218 (386)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEECCCC-ccCCcccccccCchhHHHHHHhc-CCEEEEE
Confidence 456665 45666676 57777787774 44666644 34444 345664 8888764
No 331
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=37.07 E-value=49 Score=30.37 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCC
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE 705 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~ 705 (767)
+.+..|.+|.+.|++.|+..+++|+.. .|++.+.++++++..+
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 456789999999999999999999874 6889998888877544
No 332
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=36.37 E-value=71 Score=30.47 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccC-CCC-------------cHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFC-KPL-------------DTDLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~sl-kPl-------------D~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
.....+..+++.|++.|++++++|++-. .|+ +.+.+.+.++..+.+|++=--+.|++.+.+..++
T Consensus 15 ~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~l 93 (152)
T PF03358_consen 15 NTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFL 93 (152)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHH
Confidence 3446666777788888999999999976 221 2234455556667666665555677776665554
No 333
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=35.76 E-value=66 Score=29.76 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~ 704 (767)
..+..|.+|.+.|++.|+.++++|+.- .|++.+.+.++++..
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~ 48 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKL 48 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHc
Confidence 456789999999999999999999774 678888887776543
No 334
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=35.09 E-value=8.6e+02 Score=29.14 Aligned_cols=151 Identities=23% Similarity=0.295 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEee--chhHHH
Q 004227 466 TYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAI--YSSFLQ 543 (767)
Q Consensus 466 s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~t--ys~Fl~ 543 (767)
.|..+|.++|... .=+=+++.+.. .|+=|.-...++++=-..+-|.|.++.=+|.|+|..-.+|++.+ ..+=..
T Consensus 9 ~~a~v~~eeL~r~---GV~~vvicPGS-RSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~A 84 (566)
T COG1165 9 LWARVFLEELARL---GVRDVVICPGS-RSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVA 84 (566)
T ss_pred HHHHHHHHHHHHc---CCcEEEECCCC-CCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhh
Confidence 4555555555433 23446676643 34545555566675557888999999999999999999988775 333223
Q ss_pred hHHHHHHHhhhcCCCCEEEEe-ecC-CccCCCCCCCCChhHHHHhhcCCCcEE--EecCCHHHHHHHHHHHHh-------
Q 004227 544 RGYDQVVHDVDLQKLPVRFAM-DRA-GLVGADGPTHCGAFDVTFMSCLPNMVV--MAPSDEAELMHMVATAAV------- 612 (767)
Q Consensus 544 ra~dQi~~~~a~~~lpViiv~-~~~-Gl~G~dG~TH~~~~Dla~lr~iPg~~V--~~Psd~~E~~~~l~~A~~------- 612 (767)
..|..+ -.+.+.+.|.++.. ||. =+.+- | .-|.+++..+|.+.|+..+ -.|.+..++.+.+++...
T Consensus 85 Nl~PAV-iEA~~srvpLIVLTADRP~EL~~~-G-AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~ 161 (566)
T COG1165 85 NLYPAV-IEANLSRVPLIVLTADRPPELRGC-G-ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQAR 161 (566)
T ss_pred hccHHH-HhhhhcCCceEEEeCCCCHHHhcC-C-CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 334444 45688999977766 442 12111 1 2467888888998887554 478888887777665533
Q ss_pred -hCCCCEEEEec
Q 004227 613 -IDDRPSCFRFP 623 (767)
Q Consensus 613 -~~~~P~~irl~ 623 (767)
...+|+-|-.|
T Consensus 162 ~~~~GpVHiN~P 173 (566)
T COG1165 162 TPHAGPVHINVP 173 (566)
T ss_pred CCCCCceEecCC
Confidence 23467777555
No 335
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=34.71 E-value=75 Score=26.52 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCC-CCCCHHH
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGS 720 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~-~~GGlgs 720 (767)
.....|..|.+.|++.|+..+.+|+.. .|-..+.+.+.-..+-.+|++++. ..+||-.
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccCH
Confidence 445789999999999999999999974 222223333321122345677554 4677743
No 336
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=34.60 E-value=64 Score=29.56 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhcc
Q 004227 663 IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE 703 (767)
Q Consensus 663 ~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~ 703 (767)
.+..|.+|.+.|++.||.+.++|+. =.|++.+.+.++++.
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~-k~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYK-KEPLSREELRELLSK 44 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETT-TS---HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhh-hCCCCHHHHHHHHHH
Confidence 4578999999999999999999988 457788888776654
No 337
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=34.33 E-value=1.6e+02 Score=31.17 Aligned_cols=73 Identities=27% Similarity=0.324 Sum_probs=48.4
Q ss_pred cCceeEee-cCCcEEEEEechhHHHHHHHHHHHhcCC--CcEEEEE-cccCCC-CcHHHHHHHhccCCEEEEEcCCCCC
Q 004227 643 IGKGRILM-EGDRVAILGYGSIVQQCVLAANMLKSQD--ISVTVAD-ARFCKP-LDTDLIRQLANEHEILITVEEGSVG 716 (767)
Q Consensus 643 igk~~vl~-eG~dvtIva~Gs~v~~al~Aa~~L~~~G--I~v~VId-l~slkP-lD~e~i~~~~~~~~~vVvvEe~~~G 716 (767)
+|++.... .+..+.+|+-|..+...+..++.+.+.| -++.++- .++-+. +..+.+.+...+ ...+++|+++.|
T Consensus 97 ~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~~G 174 (252)
T COG0543 97 LGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGWKG 174 (252)
T ss_pred CCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCCCc
Confidence 44443332 2445999999999999999999998878 5565554 333222 445666666554 678888876643
No 338
>PRK10824 glutaredoxin-4; Provisional
Probab=34.01 E-value=99 Score=29.09 Aligned_cols=71 Identities=14% Similarity=0.029 Sum_probs=47.6
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHHHH
Q 004227 652 GDRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSHVC 723 (767)
Q Consensus 652 G~dvtIva~G----s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~-~~~~~vVvvEe~~~GGlgs~I~ 723 (767)
..+|+|++-| +.+..|..|.+.|.+.|++..++|+-. .|--.+.+.+.. ..+=.-|.|.....||.....+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~-d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~ 89 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIE 89 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC-CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 4578888888 478999999999999999999998852 121112333322 1233456677767899865544
No 339
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=33.69 E-value=2.6e+02 Score=30.75 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=45.1
Q ss_pred CCCCCCCCCCCCCCCcccchh-HHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHH-HcCCCEEEEEECCCC
Q 004227 238 GFPKREESVHDAFGAGHSSTS-ISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAG-FLDANLIVVLNDNKQ 315 (767)
Q Consensus 238 G~p~~~es~~~~~g~G~~G~~-ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~-~~~~nli~Iv~dN~~ 315 (767)
-||+|. |-.|.+=+. ++.|.|+|++- + .-.+.+=+.+..+-+||=+.++- +.++|+-+|.-+-+.
T Consensus 46 ~fPdR~------~NvGIaEQ~mvg~AAGLA~~G----k---~Pfv~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~ 112 (312)
T COG3958 46 EFPDRF------FNVGIAEQDMVGTAAGLALAG----K---KPFVSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGV 112 (312)
T ss_pred hCchhh------eecchHHHHHHHHHHHHHhcC----C---CceeechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCc
Confidence 466652 344544433 67788888752 2 23445678899889999987775 567999999998884
No 340
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=33.48 E-value=2.1e+02 Score=32.40 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=44.9
Q ss_pred HHHHHHhhhcCCCCEEEEeecCCccCCCCCC--CCChhHHH-HhhcCCCcEEEecCCHHHHHHHHHHHHh--hCCCCEEE
Q 004227 546 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPT--HCGAFDVT-FMSCLPNMVVMAPSDEAELMHMVATAAV--IDDRPSCF 620 (767)
Q Consensus 546 ~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~T--H~~~~Dla-~lr~iPg~~V~~Psd~~E~~~~l~~A~~--~~~~P~~i 620 (767)
+|. +|.++..++|+++++...++ +..-++ ++...++. ....+|++.| .=.|..++..++..|+. +.++|++|
T Consensus 178 ~Ea-ln~A~~~~lPvvfvveNN~~-aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lI 254 (362)
T PLN02269 178 FEA-LNIAALWDLPVIFVCENNHY-GMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVL 254 (362)
T ss_pred HHH-HHHhhccCcCEEEEEeCCCE-eccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 444 47788999999999987774 211121 11222221 1124666644 66677777777777664 23789998
Q ss_pred Eec
Q 004227 621 RFP 623 (767)
Q Consensus 621 rl~ 623 (767)
-..
T Consensus 255 e~~ 257 (362)
T PLN02269 255 EMD 257 (362)
T ss_pred EEe
Confidence 653
No 341
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=32.75 E-value=2.2e+02 Score=29.96 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 695 DLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 695 e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
+.+.+.+...+.+|++= .+.--..|++.|.+.|+.+...-+.+.+.||+.+-..
T Consensus 165 ~~l~~~l~~~~~~vv~k---~~~~~~~i~~~L~~~g~~~~~~~v~~~~~~~E~i~~~ 218 (241)
T PRK05990 165 EELRRRLADADAAVIMK---LGRNLDKVRRVLAALGLLDRALYVERATMANQRIVPL 218 (241)
T ss_pred HHHHHHHhCCCCEEEEE---eCCcHHHHHHHHHHcCCCCCEEEEEECCCCCeEEEEc
Confidence 34444444444333331 1222367888888888755445578999999887643
No 342
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=32.42 E-value=65 Score=29.91 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCC
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE 705 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~ 705 (767)
..+..|.+|.+.|++.|+.+..+|+.. .|+..+.++++++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 7 PRCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKLG 49 (114)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHcC
Confidence 456789999999999999999999874 7889988888876543
No 343
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=32.38 E-value=2.3e+02 Score=29.12 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=35.0
Q ss_pred HHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCC-CCCc-eEEEEecCCccccc
Q 004227 694 TDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGIL-DGPL-KVFIFSLIQKLETD 750 (767)
Q Consensus 694 ~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~-d~~~-k~~~~gl~D~f~~~ 750 (767)
.+.+..+++....+++.+.. ..+ ..+++.|.+.|+. +.++ -..+++.||+-+..
T Consensus 145 ~~~l~~~~~~~~~~vi~~~~--~~~-~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~ 200 (229)
T TIGR01465 145 GEKLADLAKHGATMAIFLSA--HIL-DKVVKELIEGGYSEDTPVAVVYRATWPDEKIVR 200 (229)
T ss_pred hHHHHHHhcCCCeEEEECcH--HHH-HHHHHHHHHcCcCCCCcEEEEEeCCCCCcEEEE
Confidence 45567777766777888754 233 6788888888763 2222 24588888876643
No 344
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=32.37 E-value=2.3e+02 Score=28.22 Aligned_cols=111 Identities=11% Similarity=0.079 Sum_probs=59.0
Q ss_pred cEEEEEech-hHHHHHHH-HHHHhcCC--CcEEEEEcccCC-C--CcHH--------HHHHHhccCCEEEEEcCCCCCCH
Q 004227 654 RVAILGYGS-IVQQCVLA-ANMLKSQD--ISVTVADARFCK-P--LDTD--------LIRQLANEHEILITVEEGSVGGF 718 (767)
Q Consensus 654 dvtIva~Gs-~v~~al~A-a~~L~~~G--I~v~VIdl~slk-P--lD~e--------~i~~~~~~~~~vVvvEe~~~GGl 718 (767)
++.|+|.|. +-....+. ++..+.-+ .+++++++.-.+ | .+.+ .|.+.+.+...+|++++.-.---
T Consensus 2 ki~iiaVGk~~~~~~~~g~~eY~KR~~~~~~leliei~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~vi~Ld~~Gk~~s 81 (155)
T COG1576 2 KINIIAVGKKKPKYVKDGIAEYLKRFPRYLKLELIEIPEEKRGKNASAELIKKKEGEAILAAIPKGSYVVLLDIRGKALS 81 (155)
T ss_pred eEEEEEeeccchHHHHHHHHHHHHHhccccCceEEecCCccCccccCHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcCC
Confidence 478999993 33333333 33343333 778888876442 2 1112 23344555568888887654333
Q ss_pred HHHHHHHHHhcCCCCCCceEE---EEecCCc------ccccccccccCcccceee
Q 004227 719 GSHVCHFLTLSGILDGPLKVF---IFSLIQK------LETDCRLLSFPSPFIYSI 764 (767)
Q Consensus 719 gs~I~~~l~~~~~~d~~~k~~---~~gl~D~------f~~~~~~~~~~~~~~~~~ 764 (767)
+++++.++..-.-....+-+. +.|+.+. +.-+.+.||||=|+.--+
T Consensus 82 Se~fA~~l~~~~~~G~~i~f~IGG~~Gl~~~~~~~a~~~~sls~lT~PHql~rlv 136 (155)
T COG1576 82 SEEFADFLERLRDDGRDISFLIGGADGLSEAVKARADQVLSLSKLTLPHQLVRLV 136 (155)
T ss_pred hHHHHHHHHHHHhcCCeEEEEEeCcccCCHHHHHHHhhheecccccchhHHHHHH
Confidence 566666665322110112221 2344433 334678899999886443
No 345
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=32.37 E-value=26 Score=36.12 Aligned_cols=27 Identities=48% Similarity=0.764 Sum_probs=20.7
Q ss_pred CCCCCCCCCCccceeecccEEEeeeeeee
Q 004227 11 PPVRGPHSPSRFSYYKNTSLVITQRRHYT 39 (767)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (767)
-|-|-||||.||+- ...||+.|+|.-|
T Consensus 87 LParVpHSPqRFan--tvGlVVEr~R~~t 113 (279)
T KOG3995|consen 87 LPARVPHSPQRFAN--TVGLVVERRRLET 113 (279)
T ss_pred eccCCCCChhhhcc--ceeEEEEeccCCC
Confidence 47899999999973 3468888888543
No 346
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=31.52 E-value=1.1e+02 Score=26.62 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=41.6
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcH-HHHHHHh-ccCCEEEEEcCCCCCC
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDT-DLIRQLA-NEHEILITVEEGSVGG 717 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~-e~i~~~~-~~~~~vVvvEe~~~GG 717 (767)
++|.+. +....|..|.+.|.+.|+....+++.--.+-.. +.+++.- ..+-..|++.+...||
T Consensus 3 v~iyt~-~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 3 VTIYTK-PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred EEEEEC-CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 455554 447899999999999999999999886554222 3444442 2344567788765554
No 347
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=30.64 E-value=3.6e+02 Score=28.63 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=35.2
Q ss_pred HHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCC-CCCc-eEEEEecCCccccc
Q 004227 694 TDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGIL-DGPL-KVFIFSLIQKLETD 750 (767)
Q Consensus 694 ~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~-d~~~-k~~~~gl~D~f~~~ 750 (767)
.+.+..+++....+|+++.... -..|++.|.+.|+. +.++ -..+++.||+-+..
T Consensus 154 ~~~l~~~~~~~~t~vi~~~~~~---~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~ 209 (257)
T PRK15473 154 REQLESFASHQTSMAIFLSVQR---IHRVAERLIAGGYPATTPVAVIYKATWPESQTVR 209 (257)
T ss_pred hhhHHHHhcCCCeEEEECCchh---HHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEE
Confidence 3457777777667888874322 56788888888863 3332 24688888876643
No 348
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=30.51 E-value=4.2e+02 Score=32.69 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHH-HHHcCCCEEEEEECCCC
Q 004227 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNN-AGFLDANLIVVLNDNKQ 315 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~-A~~~~~nli~Iv~dN~~ 315 (767)
.++.|.|||+. | -++++++.. .+.+ -+||-+.+ ++..++|+.++++.-+.
T Consensus 435 aVt~AAGLA~~----G-~kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aGl 485 (701)
T PLN02225 435 AVTFSAGLSSG----G-LKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAGL 485 (701)
T ss_pred HHHHHHHHHHC----C-CEEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCcc
Confidence 36667777753 3 466667774 5654 66676544 67788999999987653
No 349
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=30.36 E-value=1.3e+02 Score=33.47 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=52.1
Q ss_pred ecCCcEEEEEechhH-HHHHHHHHHHhcCCCc-EEEEEcccCCCCcHHHH-----HHHhccCCEEEEEcCCCCCCHH
Q 004227 650 MEGDRVAILGYGSIV-QQCVLAANMLKSQDIS-VTVADARFCKPLDTDLI-----RQLANEHEILITVEEGSVGGFG 719 (767)
Q Consensus 650 ~eG~dvtIva~Gs~v-~~al~Aa~~L~~~GI~-v~VIdl~slkPlD~e~i-----~~~~~~~~~vVvvEe~~~GGlg 719 (767)
+.++ =+|+++|... .+..+|.+.+++.|.. +.++.+.+-.|-|.+.+ .++....+..|-+-+|+.|-+.
T Consensus 145 ~~~k-PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~g~~a 220 (347)
T COG2089 145 KKGK-PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTLGILA 220 (347)
T ss_pred hcCC-CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCccchhH
Confidence 4555 4567777655 8888999999998765 88999999999887643 4445556888888999877433
No 350
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=30.29 E-value=1e+02 Score=28.52 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhcc
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE 703 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~ 703 (767)
..+..|.+|.+.|++.|+..+++|+. -.|++.+.+.+.++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~-~~~~~~~el~~~~~~ 48 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLF-KQPLTKEELKEILSL 48 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecC-CCcchHHHHHHHHHH
Confidence 56788999999999999999999985 367788888777664
No 351
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=29.83 E-value=1e+02 Score=31.04 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=33.3
Q ss_pred CcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhc-CCCCCCce-EEEEecCCcccc
Q 004227 692 LDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLS-GILDGPLK-VFIFSLIQKLET 749 (767)
Q Consensus 692 lD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~-~~~d~~~k-~~~~gl~D~f~~ 749 (767)
.+...+.++.+....+++.+.... -..+++.|.+. +..+.++- ..++|.||+-+.
T Consensus 146 ~~~~~l~~~~~~~~~~vil~~~~~---~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i~ 202 (210)
T PF00590_consen 146 EREKLLENLLANGDTLVILTDPRR---LAEIAELLLERLYPPDTPVAVGERLGYPDERIF 202 (210)
T ss_dssp HHHHHHHHHHTTTSEEEEEESGCC---HHHHHHHHHHHSHTTTSEEEEEESTTSTTEEEE
T ss_pred chHHHHHHHHhCCCEEEEEccCch---HHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEEE
Confidence 345566777777788999987652 56677777665 11122222 346677766543
No 352
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=29.54 E-value=1.2e+02 Score=28.65 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=37.1
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCC
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE 705 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~ 705 (767)
++|..+ ..+..|.+|.+.|+++||..+++|.. -.|++.+.+.+.++..+
T Consensus 3 itiy~~-p~C~t~rka~~~L~~~gi~~~~~~y~-~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGN-PNCSTCRKALAWLEEHGIEYTFIDYL-KTPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeC-CCChHHHHHHHHHHHcCCCcEEEEee-cCCCCHHHHHHHHHHcC
Confidence 455544 33468999999999999999999976 45778888877766543
No 353
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=29.37 E-value=5.3e+02 Score=25.29 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEE--cCCcccCcchHHHHHHHHHcCCCEEEEEECCC
Q 004227 258 SISAGLGMAVARDILGKNNNVISVI--GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~vi--GDGal~eG~~~EAln~A~~~~~nli~Iv~dN~ 314 (767)
+..+|.|+|.+. ++..+|+. |=|.++ ..-++..|...+.||++|.-+-.
T Consensus 51 A~~~A~g~ar~~-----g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~ 101 (172)
T PF02776_consen 51 AAFMADGYARAT-----GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRP 101 (172)
T ss_dssp HHHHHHHHHHHH-----SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESS
T ss_pred hHHHHHHHHHhh-----ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccc
Confidence 455676776653 45555554 334443 55667777777899999997665
No 354
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=29.01 E-value=84 Score=28.37 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhcc
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE 703 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~ 703 (767)
..+..|.+|.+.|++.|+..+.+|+.- .|++.+.+.++...
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~ 47 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAK 47 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHh
Confidence 456889999999999999999999873 67788877776654
No 355
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=28.91 E-value=99 Score=29.49 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhcc
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE 703 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~ 703 (767)
.....|.+|.+.|+++|+..+++|+.- .|++.+.|++.++.
T Consensus 9 p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 9 PGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGN 49 (126)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHH
Confidence 456889999999999999999999874 68888888777654
No 356
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=28.91 E-value=5.7e+02 Score=28.57 Aligned_cols=133 Identities=19% Similarity=0.223 Sum_probs=74.6
Q ss_pred CCCCCChhHHHHhhcCCCcEEEecCCHH---HHHHHHHHHHhhCCCCEEEEecCCCCcccccCCCCCCCCcccCceeEee
Q 004227 574 GPTHCGAFDVTFMSCLPNMVVMAPSDEA---ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILM 650 (767)
Q Consensus 574 G~TH~~~~Dla~lr~iPg~~V~~Psd~~---E~~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~ 650 (767)
||+-.+..-... .+.|++--+.|...+ |+..-+++.|+. .++.-+.++.... ...+..--..+.
T Consensus 24 GPsnl~~~V~~A-~~~~~lgh~sPe~~qIm~~v~egikyVFkT-~n~~tf~isgsGh-----------~g~E~al~N~le 90 (385)
T KOG2862|consen 24 GPSNLSGRVQEA-MSRPSLGHMSPEFVQIMDEVLEGIKYVFKT-ANAQTFVISGSGH-----------SGWEAALVNLLE 90 (385)
T ss_pred CCcCCCHHHHHh-hcCCccccCCHHHHHHHHHHHHHHHHHhcc-CCCceEEEecCCc-----------chHHHHHHhhcC
Confidence 566554433222 234677777887765 444444555542 2222222221110 111111124566
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC-CEEEEEcCC-CCCCHHHHH
Q 004227 651 EGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEG-SVGGFGSHV 722 (767)
Q Consensus 651 eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~-~~vVvvEe~-~~GGlgs~I 722 (767)
+|+.+.++..|.-.+. |+|.++..|..|.++-..+=.-.+.|.|.+.+..+ ..+|+|=.+ +..|.-+.+
T Consensus 91 Pgd~vLv~~~G~wg~r---a~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~ 161 (385)
T KOG2862|consen 91 PGDNVLVVSTGTWGQR---AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDL 161 (385)
T ss_pred CCCeEEEEEechHHHH---HHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchH
Confidence 8889999999987665 56666777999999977776778888887655444 344444433 445544443
No 357
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=28.73 E-value=1.8e+02 Score=28.07 Aligned_cols=54 Identities=28% Similarity=0.332 Sum_probs=31.8
Q ss_pred EEEechhH----HHHHHHHHHHhcCCC--cEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCC
Q 004227 657 ILGYGSIV----QQCVLAANMLKSQDI--SVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (767)
Q Consensus 657 Iva~Gs~v----~~al~Aa~~L~~~GI--~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (767)
|+++|+.. .-...+++.|+++.. .++++|..+. ..+.+..+.+..+++|+||.-
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEec
Confidence 56666655 245566777766543 3777877654 234443445556777777763
No 358
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=28.66 E-value=1.1e+02 Score=29.26 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~ 704 (767)
..+..|.+|.+.|+++||..+++|+.. .|++.+.+.+.++..
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKT 49 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHh
Confidence 566889999999999999999999874 677888888777653
No 359
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=28.53 E-value=4.6e+02 Score=27.73 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccc
Q 004227 695 DLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETD 750 (767)
Q Consensus 695 e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~ 750 (767)
+.+++.+.....+|..- .+..-..|.+.|.+.|..+.-.-+.+.+.|++.+..
T Consensus 162 ~~l~~~l~~~~~vVlmk---~~~~~~~i~~~L~~~g~~~~~~vv~~~~~~~E~i~~ 214 (238)
T PRK05948 162 EELEQALTWADVVVLMK---VSSVYPQVWQWLKARNLLEQASLVERATTPEQVIYR 214 (238)
T ss_pred HHHHHHHhCCCEEEEEE---CCccHHHHHHHHHhCCCCCCEEEEEECCCCCcEEEe
Confidence 45556666556666555 233456777888887764333446799999988753
No 360
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=27.98 E-value=3.5e+02 Score=28.01 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=49.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHH--hcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhc
Q 004227 652 GDRVAILGYGSIVQQCVLAANML--KSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLS 729 (767)
Q Consensus 652 G~dvtIva~Gs~v~~al~Aa~~L--~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~ 729 (767)
|-++-+|. |.....+..|.--+ ...+..+.+++.+ . +.+.+.+.++..+.+++..... .+. .+++.|.+.
T Consensus 118 ~~~veviP-GiSs~~~a~a~~g~~l~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~vvil~~~~--~~~-~i~~~L~~~ 189 (230)
T TIGR01467 118 GIEVEVVP-GITSFAACASAAGLPLVEGDESLAILPAT--A--GEAELEKALAEFDTVVLMKVGR--NLP-QIKEALAKL 189 (230)
T ss_pred CCcEEEeC-ChhHHHHHHHHhCCCcccCCceEEEEeCC--C--CHHHHHHHhccCCeEEEEecCC--CHH-HHHHHHHHc
Confidence 44666664 54443333222111 1123334455433 1 2244666777777788887654 233 588888777
Q ss_pred CCCCCCceEEEEecCCcccccc
Q 004227 730 GILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 730 ~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
|....-.-+.+++.||+-+...
T Consensus 190 g~~~~v~v~e~l~~~~E~i~~~ 211 (230)
T TIGR01467 190 GRLDAAVVVERATMPDEKIVDL 211 (230)
T ss_pred CCcccEEEEEECCCCCcEEEcc
Confidence 7522123356999999877654
No 361
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=27.81 E-value=1.7e+02 Score=27.24 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=43.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcc--------------cCCC--------CcHHHHHHHhccCCEEEEE
Q 004227 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR--------------FCKP--------LDTDLIRQLANEHEILITV 710 (767)
Q Consensus 653 ~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~--------------slkP--------lD~e~i~~~~~~~~~vVvv 710 (767)
+++.|+..|.. |.++++.+++.|+++-+++-. .+-| ++.|.|.+++++.+... +
T Consensus 3 kkvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~-i 78 (110)
T PF00289_consen 3 KKVLIANRGEI---AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADA-I 78 (110)
T ss_dssp SEEEESS-HHH---HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESE-E
T ss_pred CEEEEECCCHH---HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcc-c
Confidence 35778888877 555556666779988777633 2445 77777777776654333 2
Q ss_pred cCCC-CCCHHHHHHHHHHhcCC
Q 004227 711 EEGS-VGGFGSHVCHFLTLSGI 731 (767)
Q Consensus 711 Ee~~-~GGlgs~I~~~l~~~~~ 731 (767)
--++ .-.....+++.+.+.|+
T Consensus 79 ~pGyg~lse~~~fa~~~~~~gi 100 (110)
T PF00289_consen 79 HPGYGFLSENAEFAEACEDAGI 100 (110)
T ss_dssp ESTSSTTTTHHHHHHHHHHTT-
T ss_pred ccccchhHHHHHHHHHHHHCCC
Confidence 2233 12334556666666553
No 362
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=27.51 E-value=2e+02 Score=27.73 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=33.5
Q ss_pred EEEEEechhH----HHHHHHHHHHhcCCC--cEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCC
Q 004227 655 VAILGYGSIV----QQCVLAANMLKSQDI--SVTVADARFCKPLDTDLIRQLANEHEILITVEEG 713 (767)
Q Consensus 655 vtIva~Gs~v----~~al~Aa~~L~~~GI--~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~ 713 (767)
++|+++|+.. .-...+++.|++... .++++|..+.- .+.+.. +.+.+.+|+||.-
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~---~~l~~~-l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG---MEVMFR-ARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH---HHHHHH-hcCCCEEEEEEeC
Confidence 3577777766 245566777765432 47788887663 233333 3456777777763
No 363
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=27.37 E-value=1.8e+02 Score=22.92 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=39.1
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhcc-CCEEEEEcCCCCCCHHH
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE-HEILITVEEGSVGGFGS 720 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~-~~~vVvvEe~~~GGlgs 720 (767)
+++.+. .....|..|...|++.++....+|+..-.. -.+.+.+.... +-.++++.+...||+..
T Consensus 2 v~ly~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~~~~~igg~~~ 66 (72)
T cd02066 2 VVVFSK-STCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFINGEFIGGYDD 66 (72)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEecHHH
Confidence 344443 346789999999999999999999864322 12233333222 22355666555788854
No 364
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=27.13 E-value=2.1e+02 Score=33.67 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=77.3
Q ss_pred CEEEEeccccCCcChh--hhhhhCCC-cEEeccccHHHHHHHHHHHHhc-CCeeEEeechhHHHhHHHHHHHhhhcCCCC
Q 004227 484 KIVAIHAAMGGGTGLN--YFQKRFPD-RCFDVGIAEQHAVTFAAGLASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKLP 559 (767)
Q Consensus 484 ~ivvi~aD~~gs~gl~--~f~~~~P~-R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~tys~Fl~ra~dQi~~~~a~~~lp 559 (767)
.++.+..| +.|. ++.++.|+ |.+.+ -.|-++.=.|=|.|.. |+-.++.||...-.-|++-|- -+---++|
T Consensus 21 svfgVPGD----FNL~LLD~l~~~~~lrwvGn-~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLSAlNGIA-GsYAE~vp 94 (561)
T KOG1184|consen 21 TVFGVPGD----FNLSLLDKLYAVPGLRWVGN-CNELNAAYAADGYARSKGIGACVTTFGVGELSALNGIA-GAYAENVP 94 (561)
T ss_pred eeEECCCc----ccHHHHHHhhhcCCceeecc-cchhhhhhhhcchhhhcCceEEEEEeccchhhhhcccc-hhhhhcCC
Confidence 56665555 4443 33344455 44333 5788988899999985 888889999888666755441 11125899
Q ss_pred EEEEeecCCc--cCCCCCCCCCh--hHHH-HhhcCCCcE--EEecCCHHHHHHHHHHHHh---hCCCCEEEEecCC
Q 004227 560 VRFAMDRAGL--VGADGPTHCGA--FDVT-FMSCLPNMV--VMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (767)
Q Consensus 560 Viiv~~~~Gl--~G~dG~TH~~~--~Dla-~lr~iPg~~--V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~ 625 (767)
|+.+...... .+.+---||-+ -|.. ++|...++. +..=-|.+++...+..|++ ...+|+||-.|..
T Consensus 95 VihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~rPVYi~iP~n 170 (561)
T KOG1184|consen 95 VIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKESKPVYIGVPAN 170 (561)
T ss_pred EEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhcCCeEEEeecc
Confidence 9988633221 12333345532 2222 233323322 2233455555555555544 3678999998864
No 365
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.94 E-value=87 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcc
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADAR 687 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~ 687 (767)
...+.|++|-+.|++.|++++++-++
T Consensus 9 ~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 9 PSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 44678899999999999999998543
No 366
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=25.81 E-value=3.2e+02 Score=30.04 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=48.8
Q ss_pred eeEEeechh--HHHhH-HHHHHHhhhcCCCCEEEEeecCCccCCCCCCC-----CChhHHHHhhcCCCcEEEecCCHHHH
Q 004227 532 KPFCAIYSS--FLQRG-YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGAFDVTFMSCLPNMVVMAPSDEAEL 603 (767)
Q Consensus 532 rP~~~tys~--Fl~ra-~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH-----~~~~Dla~lr~iPg~~V~~Psd~~E~ 603 (767)
+++++++.+ |.+-. ++. ++.++..++|+++++...++ |...++. ....+++-.-.+|+++ +.=.|+.++
T Consensus 133 ~~vv~~~GDGa~~~g~~~ea-ln~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~~~~~-Vdg~d~~av 209 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYES-FNMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGIPGER-VDGMDVLAV 209 (315)
T ss_pred CEEEEEeCCCcccccHHHHH-HHHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCCCEEE-ECCCCHHHH
Confidence 455555433 44222 233 46678899999999866663 3211111 1223333223456554 344567777
Q ss_pred HHHHHHHHh---hCCCCEEEEe
Q 004227 604 MHMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 604 ~~~l~~A~~---~~~~P~~irl 622 (767)
...++.|++ ..++|++|-.
T Consensus 210 ~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 210 REAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 777777664 3467988855
No 367
>PRK12559 transcriptional regulator Spx; Provisional
Probab=25.59 E-value=1.4e+02 Score=28.46 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhcc
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE 703 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~ 703 (767)
..+..|.+|.+.|++.|+..+++|+. -.|++.+.+++.++.
T Consensus 8 ~~C~~crkA~~~L~~~gi~~~~~di~-~~~~s~~el~~~l~~ 48 (131)
T PRK12559 8 ASCASCRKAKAWLEENQIDYTEKNIV-SNSMTVDELKSILRL 48 (131)
T ss_pred CCChHHHHHHHHHHHcCCCeEEEEee-CCcCCHHHHHHHHHH
Confidence 45688999999999999999999986 467788888877665
No 368
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=25.46 E-value=2.9e+02 Score=25.76 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=44.5
Q ss_pred EEEecCCHHHHHHHHHHHHhhCCCCEEEEecCCCCcccccCCCCCCCCccc---CceeEeecCCcEEEEEechhHHHHHH
Q 004227 593 VVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEI---GKGRILMEGDRVAILGYGSIVQQCVL 669 (767)
Q Consensus 593 ~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~i---gk~~vl~eG~dvtIva~Gs~v~~al~ 669 (767)
.|+.|.+.+|+..++++|.+ .+.|+.++-...+........ ...-+.. .+-..+.+....+.+..|....+..+
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 48999999999999999965 567888876554432211100 0111112 12122233456777777877776555
Q ss_pred HH
Q 004227 670 AA 671 (767)
Q Consensus 670 Aa 671 (767)
..
T Consensus 80 ~l 81 (139)
T PF01565_consen 80 AL 81 (139)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 369
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=25.16 E-value=3.8e+02 Score=27.83 Aligned_cols=88 Identities=14% Similarity=0.011 Sum_probs=45.8
Q ss_pred CCcEEEEEechhHHHHHHHHHH--HhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhc
Q 004227 652 GDRVAILGYGSIVQQCVLAANM--LKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLS 729 (767)
Q Consensus 652 G~dvtIva~Gs~v~~al~Aa~~--L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~ 729 (767)
|-++.++. |.....+..|.-- +...+-.+.++++.- .+.+.+.++..+.+|+.... .--..+.+.+.+.
T Consensus 118 ~~~v~viP-GiSs~~~a~a~~g~~l~~~~~~~~iis~~~-----~~~l~~~l~~~~~~vl~~~~---~~~~~i~~~l~~~ 188 (229)
T PRK05576 118 DIEVETVP-GISSFTAIASRAGVPLAMGDESLAIIPATR-----EALIEQALTDFDSVVLMKVY---KNFALIEELLEEG 188 (229)
T ss_pred CCCEEEeC-ChhHHHHHHHHcCCCcccCCceEEEEECCC-----HHHHHHHhhcCCEEEEEecC---CCHHHHHHHHHhc
Confidence 45677664 5444333322211 111222466766542 34555666666777777532 2233466666654
Q ss_pred CCCCCCceEEEEecCCccccc
Q 004227 730 GILDGPLKVFIFSLIQKLETD 750 (767)
Q Consensus 730 ~~~d~~~k~~~~gl~D~f~~~ 750 (767)
+. .-.-..+++.||+-+-.
T Consensus 189 ~~--~v~v~e~l~~~~E~i~~ 207 (229)
T PRK05576 189 YL--DALYVRRAYMEGEQILR 207 (229)
T ss_pred CC--CEEEEEECCCCCeEEEc
Confidence 42 11335799999987654
No 370
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=24.99 E-value=3.1e+02 Score=27.84 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHHHhc-CCCcEEEEEcccCCCCcHHHH---------------HHHhccCCEEEEEcCCCCCCHHHHHHH
Q 004227 661 GSIVQQCVLAANMLKS-QDISVTVADARFCKPLDTDLI---------------RQLANEHEILITVEEGSVGGFGSHVCH 724 (767)
Q Consensus 661 Gs~v~~al~Aa~~L~~-~GI~v~VIdl~slkPlD~e~i---------------~~~~~~~~~vVvvEe~~~GGlgs~I~~ 724 (767)
|..-..|.++++.+++ .|+++++++++-..| .+.. .+.+...+.||+.=--+.|++...+..
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~g~~~~~lk~ 90 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVP--EEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRFGNMAGQMRN 90 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCC--HHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccCCCchHHHHH
Confidence 4455667777888887 899999999974333 2211 233445566555444456888888888
Q ss_pred HHHhc
Q 004227 725 FLTLS 729 (767)
Q Consensus 725 ~l~~~ 729 (767)
++..-
T Consensus 91 fld~~ 95 (200)
T PRK03767 91 FLDQT 95 (200)
T ss_pred HHHHh
Confidence 88764
No 371
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=24.98 E-value=1.7e+02 Score=29.20 Aligned_cols=56 Identities=30% Similarity=0.364 Sum_probs=32.6
Q ss_pred CcEEEEEechhHH----HHHHHHHHHhcCCC---cEEEEEcccCCCCcHHHHHHHhccCCEEEEEcC
Q 004227 653 DRVAILGYGSIVQ----QCVLAANMLKSQDI---SVTVADARFCKPLDTDLIRQLANEHEILITVEE 712 (767)
Q Consensus 653 ~dvtIva~Gs~v~----~al~Aa~~L~~~GI---~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe 712 (767)
..++|+++|+.+. --...+++|++... +++|+|.-+.-| +.+.. +...+.+|+||.
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~---~l~~~-l~~~d~vIIVDa 64 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGP---NLLGL-LAGYDPVIIVDA 64 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcH---HHHHH-hcCCCcEEEEEe
Confidence 3578888888652 23345666655432 678999887754 33322 333445666664
No 372
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=24.83 E-value=99 Score=28.50 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhcc
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE 703 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~ 703 (767)
..+..|.+|.+.|+++|+..+.+|+.. .|.+.+.+.+.++.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~ 47 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEK 47 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHH
Confidence 456889999999999999999999874 57777777766544
No 373
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=24.48 E-value=5.2e+02 Score=25.32 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHHHHcCCCCeEEEEE--cCCcccCcchHHHHHHHHHcCCCEEEEEECCC
Q 004227 256 STSISAGLGMAVARDILGKNNNVISVI--GDGAMTAGQAYEAMNNAGFLDANLIVVLNDNK 314 (767)
Q Consensus 256 G~~ls~A~G~AlA~kl~g~~~~Vv~vi--GDGal~eG~~~EAln~A~~~~~nli~Iv~dN~ 314 (767)
..+.-+|.|.|.+. +..+|++ |=|..+ ..-++..|.....||++|.-+..
T Consensus 45 ~~A~~mA~gyar~t------~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 45 LNAGYAADGYARVK------GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred HHHHHHHHHHHHhh------CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCC
Confidence 33455666666653 2444444 666555 55678888777899999985543
No 374
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=24.41 E-value=56 Score=30.14 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=25.4
Q ss_pred cCCcEEEEEechhHHH-HHHHHHHHhcCCCcEEEEEcc
Q 004227 651 EGDRVAILGYGSIVQQ-CVLAANMLKSQDISVTVADAR 687 (767)
Q Consensus 651 eG~dvtIva~Gs~v~~-al~Aa~~L~~~GI~v~VIdl~ 687 (767)
+..|++||++|..... -.+..+.|++.||.+++.|-+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 3669999999987532 335667788999999999854
No 375
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=24.36 E-value=3e+02 Score=27.05 Aligned_cols=55 Identities=22% Similarity=0.187 Sum_probs=32.8
Q ss_pred EEEEEechhH----HHHHHHHHHHhcCC-CcEEEEEcccCCCCcHHHHHHHhc-cCCEEEEEcC
Q 004227 655 VAILGYGSIV----QQCVLAANMLKSQD-ISVTVADARFCKPLDTDLIRQLAN-EHEILITVEE 712 (767)
Q Consensus 655 vtIva~Gs~v----~~al~Aa~~L~~~G-I~v~VIdl~slkPlD~e~i~~~~~-~~~~vVvvEe 712 (767)
+.|+++|+.. .-...+++.|++.. -.++++|..+ -|++ .+..+.. +.+.+|+||.
T Consensus 3 ~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~--~~~~i~~~~~d~vIiVDA 63 (156)
T PRK11544 3 DVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APEN--DIVAIRELRPERLLIVDA 63 (156)
T ss_pred EEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHH--HHHHHHhcCCCEEEEEEC
Confidence 5778888866 34556677776542 2477888887 3433 2222222 3467777775
No 376
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=23.99 E-value=1.6e+02 Score=28.64 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=36.3
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEc
Q 004227 651 EGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVE 711 (767)
Q Consensus 651 eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvE 711 (767)
+|++++|++-+..+..-+ +.+|.++|..+.+++-++- .+++.++..+.||+.=
T Consensus 27 ~gk~v~VvGrs~~vG~pl--a~lL~~~gatV~~~~~~t~------~l~~~v~~ADIVvsAt 79 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPL--QCLLQRDGATVYSCDWKTI------QLQSKVHDADVVVVGS 79 (140)
T ss_pred CCCEEEEECCCchHHHHH--HHHHHHCCCEEEEeCCCCc------CHHHHHhhCCEEEEec
Confidence 467888888777776554 5567778988888886542 2455666777666554
No 377
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=23.78 E-value=2e+02 Score=28.57 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=55.3
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHH--HHhccCC------------------EEEEEcCCC
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIR--QLANEHE------------------ILITVEEGS 714 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~--~~~~~~~------------------~vVvvEe~~ 714 (767)
+++++.|..-..++.++..|.++|++|.|+-+.-..+++.+... +.+++.. .-++||.=.
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlIIDal~ 108 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLIIDALF 108 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEEEEES-
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEEEEecc
Confidence 66777888888999999999889999888655544455554322 2233322 223344211
Q ss_pred ----CC---CHHHHHHHHHHhcCCCCCCceEEEEecCCccccccccc
Q 004227 715 ----VG---GFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCRLL 754 (767)
Q Consensus 715 ----~G---Glgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~~~ 754 (767)
.+ +.-..+.+++.+.. .++..+-+|.-.-...+..
T Consensus 109 G~G~~~~l~~~~~~~i~~iN~~~-----~~viAiDiPSGl~~dtG~~ 150 (169)
T PF03853_consen 109 GTGFSGPLRGPIAELIDWINASR-----APVIAIDIPSGLDADTGEV 150 (169)
T ss_dssp STTGGSCGSTCHHHHHHHHHHHC-----SEEEEESS-TTCBTTTB-B
T ss_pred cCCCCCCcCHHHHHHHHHHhccC-----CcEEEecCCCCccCCCCCc
Confidence 12 23445666776663 4577888887776555544
No 378
>PTZ00062 glutaredoxin; Provisional
Probab=23.44 E-value=2.3e+02 Score=29.39 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=47.5
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHH---HHHHHh-ccCCEEEEEcCCCCCCHHHHHHH
Q 004227 653 DRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTD---LIRQLA-NEHEILITVEEGSVGGFGSHVCH 724 (767)
Q Consensus 653 ~dvtIva~G----s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e---~i~~~~-~~~~~vVvvEe~~~GGlgs~I~~ 724 (767)
+.|+|++-| +.+..|..+.+.|++.|++.+.+|+.. |.+ .+.+.. ..+-..|.|.....||+....
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~-- 186 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----DPDLREELKVYSNWPTYPQLYVNGELIGGHDIIK-- 186 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHH--
Confidence 456666666 357889999999999999999999862 222 222221 112245667766689986543
Q ss_pred HHHhcCCC
Q 004227 725 FLTLSGIL 732 (767)
Q Consensus 725 ~l~~~~~~ 732 (767)
.+.++|-+
T Consensus 187 ~l~~~G~L 194 (204)
T PTZ00062 187 ELYESNSL 194 (204)
T ss_pred HHHHcCCh
Confidence 35556643
No 379
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=23.39 E-value=1.5e+02 Score=33.81 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=23.6
Q ss_pred EechhHHHHHHHHHHHhcCCCcEEEEEcccC
Q 004227 659 GYGSIVQQCVLAANMLKSQDISVTVADARFC 689 (767)
Q Consensus 659 a~Gs~v~~al~Aa~~L~~~GI~v~VIdl~sl 689 (767)
.||+.-..|...++-|.+.|++|.++++..-
T Consensus 256 myg~T~~ma~aiaegl~~~gv~v~~~~~~~~ 286 (388)
T COG0426 256 MYGNTEKMAQAIAEGLMKEGVDVEVINLEDA 286 (388)
T ss_pred ccCCHHHHHHHHHHHhhhcCCceEEEEcccC
Confidence 5677777777778888888888888877654
No 380
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=23.37 E-value=1.5e+02 Score=29.89 Aligned_cols=121 Identities=21% Similarity=0.160 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEecCCCCcccccCCCCCCCCcc--------cCceeEeecCCcEEEEEechhHHHHHHHH
Q 004227 600 EAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLE--------IGKGRILMEGDRVAILGYGSIVQQCVLAA 671 (767)
Q Consensus 600 ~~E~~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~--------igk~~vl~eG~dvtIva~Gs~v~~al~Aa 671 (767)
-++...++.+|+- .++-+||.--. .+..+.........+++ .++...+.+-.+|.|++-.+.-.++.+.+
T Consensus 24 iedaARlLAQA~v-geG~IYi~G~~-Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 24 IEDAARLLAQAIV-GEGTIYIYGFG-EMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HHHHHHHHHHHHH-TT--EEEEE-G-GGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEEEecC-hHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 3678889999865 67777775432 22221100000011111 11112344556899999999999999999
Q ss_pred HHHhcCCCcEEEEEcccCCCCcHHHHHHH------hccCCEEEEEcCCCCCCHHHHHHHH
Q 004227 672 NMLKSQDISVTVADARFCKPLDTDLIRQL------ANEHEILITVEEGSVGGFGSHVCHF 725 (767)
Q Consensus 672 ~~L~~~GI~v~VIdl~slkPlD~e~i~~~------~~~~~~vVvvEe~~~GGlgs~I~~~ 725 (767)
+.|.++|+.+-+|. -.++ +.+.+.+. .+..+.+|=-|++..-|+-+.++..
T Consensus 102 ~~L~~~gi~~v~Vs--~~~~-~~~~l~~~~~~~Idl~~~~~LvP~EdG~Rig~P~~~a~l 158 (172)
T PF10740_consen 102 KQLIEQGIPFVGVS--PNKP-DEEDLEDLADVHIDLKLPKPLVPTEDGDRIGFPHLMAAL 158 (172)
T ss_dssp HHHHHHT--EEEEE---SS----TTGGG-SSS-EE----S-SEE-TTS-EE---HHHHHH
T ss_pred HHHHHCCCCEEEEE--ecCC-CCCchhhhhhheeecccCCCcccCCCCCEecchHHHHHH
Confidence 99999999988888 2222 22222221 2233567777887777777666543
No 381
>PHA03050 glutaredoxin; Provisional
Probab=23.31 E-value=2.9e+02 Score=25.44 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=46.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhcCCC---cEEEEEcccCCCCc---HHHHHHHh-ccCCEEEEEcCCCCCCHHHHHH
Q 004227 652 GDRVAILGYGSIVQQCVLAANMLKSQDI---SVTVADARFCKPLD---TDLIRQLA-NEHEILITVEEGSVGGFGSHVC 723 (767)
Q Consensus 652 G~dvtIva~Gs~v~~al~Aa~~L~~~GI---~v~VIdl~slkPlD---~e~i~~~~-~~~~~vVvvEe~~~GGlgs~I~ 723 (767)
..+|+|.+. +....|..|.+.|++.|+ ..+++|+.-..+ + .+.+.+.. +.+=..|++.....||+....+
T Consensus 12 ~~~V~vys~-~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVK-FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEEC-CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 456887776 558889999999999998 788999874322 2 23344432 2233556777666899975543
No 382
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=23.03 E-value=4.4e+02 Score=30.61 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=45.4
Q ss_pred eeEEeechh--HHHh-HHHHHHHhhhcCCCCEEEEeecCCc-cCC--CCCCCC-ChhHHHHhhcCCCcEEEecCCHHHHH
Q 004227 532 KPFCAIYSS--FLQR-GYDQVVHDVDLQKLPVRFAMDRAGL-VGA--DGPTHC-GAFDVTFMSCLPNMVVMAPSDEAELM 604 (767)
Q Consensus 532 rP~~~tys~--Fl~r-a~dQi~~~~a~~~lpViiv~~~~Gl-~G~--dG~TH~-~~~Dla~lr~iPg~~V~~Psd~~E~~ 604 (767)
+++++++.+ +.+- .++. ++.++..++||++++...+. .|. .-.+.. .+...+-.-.+|++.| .=.|..++.
T Consensus 224 ~vvv~~~GDGa~~eG~f~Ea-Ln~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~ 301 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFEC-LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVR 301 (433)
T ss_pred CEEEEEECCCccccChHHHH-HHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHH
Confidence 455666544 3221 2444 37788999999999866553 121 001111 1222222223555543 445556555
Q ss_pred HHHHHHHh---hCCCCEEEEe
Q 004227 605 HMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 605 ~~l~~A~~---~~~~P~~irl 622 (767)
..+..|++ ..++|++|-.
T Consensus 302 ~a~~~A~~~Ar~g~gP~LIe~ 322 (433)
T PLN02374 302 EVAKEAIERARRGEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 44444443 2568988754
No 383
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=23.01 E-value=1.3e+02 Score=34.40 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=43.8
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcH-HHHHHHhc---------cCCEEEEEcCCCCCCHHHHHH
Q 004227 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDT-DLIRQLAN---------EHEILITVEEGSVGGFGSHVC 723 (767)
Q Consensus 654 dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~-e~i~~~~~---------~~~~vVvvEe~~~GGlgs~I~ 723 (767)
+|+|.+. +.+..|.+|.+.|++.||.-+++|+. +.-+. +.+.+.-+ .+=..|++.+...||+.....
T Consensus 3 ~V~vys~-~~Cp~C~~aK~~L~~~gi~~~~idi~--~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTK-TNCPFCDLAKSWFGANDIPFTQISLD--DDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeC-CCCHHHHHHHHHHHHCCCCeEEEECC--CChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 4555554 77899999999999999999999996 22121 22223211 122446777666899976543
No 384
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=22.02 E-value=2.8e+02 Score=27.05 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=36.2
Q ss_pred CcEEEEEechhH----HHHHHHHHHHhcCC----CcEEEEEcccCCCCcHHHHHH--HhccCCEEEEEcCC
Q 004227 653 DRVAILGYGSIV----QQCVLAANMLKSQD----ISVTVADARFCKPLDTDLIRQ--LANEHEILITVEEG 713 (767)
Q Consensus 653 ~dvtIva~Gs~v----~~al~Aa~~L~~~G----I~v~VIdl~slkPlD~e~i~~--~~~~~~~vVvvEe~ 713 (767)
++++|+++|+.. .-...+++.|++.+ -.++++|..+.-| +.+.. .....+.+|+||.-
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~---~~l~~~~~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAP---HFVFTLIPQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHH---HHHHHHhhhcCCCEEEEEEcc
Confidence 468889999877 24556777776421 2478888776543 22212 13566788888863
No 385
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=22.00 E-value=9.7e+02 Score=26.93 Aligned_cols=35 Identities=23% Similarity=0.476 Sum_probs=22.9
Q ss_pred Hhhc-CCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEE
Q 004227 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHV 426 (767)
Q Consensus 387 fea~-G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v 426 (767)
++.+ |+.++.|. |..|+..+++.+.+ .++|++|..
T Consensus 160 lr~iPnl~V~~Pa---d~~e~~~~l~~a~~--~~gPv~ir~ 195 (356)
T PLN02683 160 YSSVPGLKVLAPY---SSEDARGLLKAAIR--DPDPVVFLE 195 (356)
T ss_pred HhcCCCCEEEEeC---CHHHHHHHHHHHHh--CCCcEEEEE
Confidence 4443 67777775 55666666776665 468998864
No 386
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=21.85 E-value=2.9e+02 Score=28.43 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=36.7
Q ss_pred CcEEEEEechhH----HHHHHHHHHHhcC---CCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcC
Q 004227 653 DRVAILGYGSIV----QQCVLAANMLKSQ---DISVTVADARFCKPLDTDLIRQLANEHEILITVEE 712 (767)
Q Consensus 653 ~dvtIva~Gs~v----~~al~Aa~~L~~~---GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe 712 (767)
.+++|++.|+.+ .-...+++.|+++ .-.++++|.-+.-+ +.+ ..+...+.+|+||.
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~---~ll-~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL---NLL-GYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH---HHH-HHHcCCCEEEEEEC
Confidence 368889999877 3455677777653 23488899887632 443 33345677777775
No 387
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=21.64 E-value=1.3e+02 Score=33.74 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEEC
Q 004227 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLND 312 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~d 312 (767)
++++|+|.++| ..++++.+.|+.+. ..+|.+..|+-...|+++++-.
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~ 106 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIM 106 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEec
Confidence 47788888887 66789999999998 8999999999999998776644
No 388
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=21.60 E-value=3.1e+02 Score=26.48 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=33.3
Q ss_pred EEEEEechhH----HHHHHHHHHHhcC---CCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcC
Q 004227 655 VAILGYGSIV----QQCVLAANMLKSQ---DISVTVADARFCKPLDTDLIRQLANEHEILITVEE 712 (767)
Q Consensus 655 vtIva~Gs~v----~~al~Aa~~L~~~---GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe 712 (767)
++|+++|+.. .-...+++.|++. .-.++++|..+.- .+.+.. +.+++.+|+||.
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~---~~l~~~-l~~~d~viiVDA 61 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG---LELLPY-IEEADRLIIVDA 61 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHHHH-HhcCCEEEEEEc
Confidence 3577778766 3355667777654 2357788877653 243333 345677888886
No 389
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=21.60 E-value=1.8e+02 Score=27.30 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHHhcCCCcEEEEEcccCC
Q 004227 661 GSIVQQCVLAANMLKSQDISVTVADARFCK 690 (767)
Q Consensus 661 Gs~v~~al~Aa~~L~~~GI~v~VIdl~slk 690 (767)
|+.-..|.+.++.|+++|++++++++....
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~~~~~~~ 37 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVVDLDDFD 37 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEEEGGGSC
T ss_pred hhHHHHHHHHHHHHHHcCCceeeechhhhh
Confidence 444455666677777789999999987654
No 390
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.25 E-value=2.1e+02 Score=31.94 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=45.1
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHhcCCCc---EEEEEcccCCCCcHH-----HHHHHhccCCEEEEEcCCCCCCHHHHH
Q 004227 652 GDRVAILGYGS-IVQQCVLAANMLKSQDIS---VTVADARFCKPLDTD-----LIRQLANEHEILITVEEGSVGGFGSHV 722 (767)
Q Consensus 652 G~dvtIva~Gs-~v~~al~Aa~~L~~~GI~---v~VIdl~slkPlD~e-----~i~~~~~~~~~vVvvEe~~~GGlgs~I 722 (767)
|+. +|+++|. ...+..+|++.+++.|.. +.++.+.+-.|-+.+ .|..+-+..+..|-.-+|..| ....+
T Consensus 133 gkP-vilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt~G-~~~~~ 210 (329)
T TIGR03569 133 GKP-VILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHTLG-IEAPI 210 (329)
T ss_pred CCc-EEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCCcc-HHHHH
Confidence 443 4566665 448888999999888864 888888887785543 444444445555666777654 44333
Q ss_pred HH
Q 004227 723 CH 724 (767)
Q Consensus 723 ~~ 724 (767)
++
T Consensus 211 aA 212 (329)
T TIGR03569 211 AA 212 (329)
T ss_pred HH
Confidence 33
No 391
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=21.11 E-value=2.3e+02 Score=30.94 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=35.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccC----------CCCcHHHHHHHhccCCEEEE
Q 004227 652 GDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFC----------KPLDTDLIRQLANEHEILIT 709 (767)
Q Consensus 652 G~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~sl----------kPlD~e~i~~~~~~~~~vVv 709 (767)
|+++.|+++|.+.. .++..|+..|.++.++|-+.- ++.+.+.+.+.+++.+.||.
T Consensus 152 g~kvlViG~G~iG~---~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 152 GSNVLVLGFGRTGM---TLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCEEEEECCcHHHH---HHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEE
Confidence 56899999997554 455566677888988887631 22333445566666666554
No 392
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=20.96 E-value=2.3e+02 Score=30.80 Aligned_cols=55 Identities=22% Similarity=0.325 Sum_probs=34.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEccc----------CCCCcHHHHHHHhccCCEEEE
Q 004227 652 GDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARF----------CKPLDTDLIRQLANEHEILIT 709 (767)
Q Consensus 652 G~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~s----------lkPlD~e~i~~~~~~~~~vVv 709 (767)
|+.+.|+++|.+-. .+++.|+..|.++.|++-.. ..+++.+.+.+.+++.+.|+.
T Consensus 151 gk~v~IiG~G~iG~---avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 151 GSNVMVLGFGRTGM---TIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCEEEEEcChHHHH---HHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEE
Confidence 56789999988554 45566667788888877432 233444445556666665543
No 393
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=20.72 E-value=3.2e+02 Score=23.70 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhcC-----CCcEEEEEcccCCCCcHHHHHHHhc---cCCEEEEEcCCCCCCHHHHHHHHHHh
Q 004227 662 SIVQQCVLAANMLKSQ-----DISVTVADARFCKPLDTDLIRQLAN---EHEILITVEEGSVGGFGSHVCHFLTL 728 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~-----GI~v~VIdl~slkPlD~e~i~~~~~---~~~~vVvvEe~~~GGlgs~I~~~l~~ 728 (767)
+....|.+|.+.|++. ++..+.+|+.- .....+.+.+... .+=..|+++....||....+. ++.+
T Consensus 8 ~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~-~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~-~~~~ 80 (86)
T TIGR02183 8 PGCPYCVRAKQLAEKLAIERADFEFRYIDIHA-EGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ-LVKE 80 (86)
T ss_pred CCCccHHHHHHHHHHhCcccCCCcEEEEECCC-CHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH-HHHh
Confidence 4567788888888765 56788888762 2212333444433 233566777666899865444 4443
No 394
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=20.13 E-value=4e+02 Score=23.90 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=36.1
Q ss_pred EEEEEechhHHHHHHHHHHHhc----CCCcEEEEEccc---CCCCcHHHHHHHhccCCEEEEEcCC
Q 004227 655 VAILGYGSIVQQCVLAANMLKS----QDISVTVADARF---CKPLDTDLIRQLANEHEILITVEEG 713 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~----~GI~v~VIdl~s---lkPlD~e~i~~~~~~~~~vVvvEe~ 713 (767)
+.|+++|+.+..+.-|++.|++ .|+++.|---.. ..+++.+.+. ..+.+|++=+.
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~----~Ad~vi~~~~~ 63 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIA----EADAVILAADV 63 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHh----hCCEEEEecCC
Confidence 5688999988777777776654 688877653333 5677766554 34556555443
No 395
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=20.07 E-value=3.9e+02 Score=26.35 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=37.5
Q ss_pred cEEEEEechhHH----HHHHHHHHHhcC-C--CcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCC
Q 004227 654 RVAILGYGSIVQ----QCVLAANMLKSQ-D--ISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS 714 (767)
Q Consensus 654 dvtIva~Gs~v~----~al~Aa~~L~~~-G--I~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~ 714 (767)
+++|+++|+.+. -...+++.|++. . -.++++|..+.- .+.+.. +...+.+|+||.-.
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~---~~ll~~-l~~~d~vIiVDA~~ 65 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG---MELLGD-MANRDHLIIADAIV 65 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH---HHHHHH-HhCCCEEEEEEecC
Confidence 478899998772 456777888653 3 358889987663 233333 34567888888643
Done!