Query 004227
Match_columns 767
No_of_seqs 361 out of 2741
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 18:20:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 6E-109 2E-113 969.3 52.4 593 137-753 7-600 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 3E-108 9E-113 962.8 49.8 592 136-752 4-596 (621)
3 3mos_A Transketolase, TK; thia 100.0 1.2E-96 4E-101 861.3 49.6 530 150-751 3-594 (616)
4 3l84_A Transketolase; TKT, str 100.0 1E-94 3.4E-99 844.2 41.8 514 155-752 1-610 (632)
5 3rim_A Transketolase, TK; TPP, 100.0 8E-94 2.7E-98 842.5 41.7 520 157-752 19-675 (700)
6 3m49_A Transketolase; alpha-be 100.0 2.6E-93 8.8E-98 838.7 39.5 530 151-751 20-666 (690)
7 1itz_A Transketolase; calvin c 100.0 1.4E-91 4.9E-96 826.6 46.1 527 149-751 5-652 (675)
8 3kom_A Transketolase; rossmann 100.0 5E-92 1.7E-96 826.0 39.2 525 156-752 2-640 (663)
9 3uk1_A Transketolase; structur 100.0 1.2E-91 4.1E-96 826.1 36.2 517 160-752 45-687 (711)
10 2e6k_A Transketolase; structur 100.0 6.3E-90 2.1E-94 810.1 41.4 511 161-751 9-627 (651)
11 2r8o_A Transketolase 1, TK 1; 100.0 2.4E-89 8.2E-94 807.4 40.9 518 160-751 4-639 (669)
12 1gpu_A Transketolase; transfer 100.0 1E-88 3.6E-93 802.8 42.5 498 159-722 6-627 (680)
13 1r9j_A Transketolase; domains, 100.0 6.4E-88 2.2E-92 794.8 41.3 512 159-751 5-631 (673)
14 2qtc_A Pyruvate dehydrogenase 100.0 7.3E-87 2.5E-91 799.4 44.0 592 139-751 56-832 (886)
15 3ahc_A Phosphoketolase, xylulo 100.0 6.3E-65 2.2E-69 599.7 35.5 524 160-748 48-758 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 2E-59 6.9E-64 563.9 40.0 538 154-753 194-914 (933)
17 1ik6_A Pyruvate dehydrogenase; 100.0 1.8E-56 6.3E-61 493.0 23.5 317 427-752 10-347 (369)
18 2yic_A 2-oxoglutarate decarbox 100.0 3.3E-55 1.1E-59 524.7 30.5 540 153-755 113-853 (868)
19 2xt6_A 2-oxoglutarate decarbox 100.0 2.7E-54 9.1E-59 528.3 32.8 540 153-755 358-1098(1113)
20 1w85_B Pyruvate dehydrogenase 100.0 3.8E-51 1.3E-55 443.8 27.2 283 465-752 3-302 (324)
21 2ozl_B PDHE1-B, pyruvate dehyd 100.0 4.9E-51 1.7E-55 445.6 27.7 284 464-752 14-318 (341)
22 2bfd_B 2-oxoisovalerate dehydr 100.0 2.3E-51 7.9E-56 448.6 21.9 297 450-751 6-320 (342)
23 1umd_B E1-beta, 2-OXO acid deh 100.0 1E-50 3.6E-55 440.3 26.1 283 464-751 3-302 (324)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 2.5E-49 8.6E-54 431.9 24.5 280 464-751 4-316 (338)
25 1umd_A E1-alpha, 2-OXO acid de 100.0 1.2E-27 4.2E-32 263.5 26.0 230 152-438 30-277 (367)
26 1w85_A Pyruvate dehydrogenase 99.9 1E-22 3.6E-27 224.0 24.7 221 152-435 38-272 (368)
27 2ozl_A PDHE1-A type I, pyruvat 99.9 6E-23 2.1E-27 225.4 21.9 228 149-437 25-270 (365)
28 2bfd_A 2-oxoisovalerate dehydr 99.9 1.4E-22 4.8E-27 225.3 21.7 198 180-436 84-293 (400)
29 1qs0_A 2-oxoisovalerate dehydr 99.9 1.8E-21 6E-26 216.5 24.5 202 180-438 103-315 (407)
30 1yd7_A 2-keto acid:ferredoxin 99.9 4.7E-23 1.6E-27 229.0 11.3 256 465-728 23-366 (395)
31 2c42_A Pyruvate-ferredoxin oxi 99.7 2.6E-16 8.9E-21 195.6 23.9 220 507-728 54-349 (1231)
32 4feg_A Pyruvate oxidase; carba 99.5 1.7E-14 5.8E-19 168.5 10.7 214 184-472 369-587 (603)
33 3ju3_A Probable 2-oxoacid ferr 99.5 1.2E-13 4.2E-18 128.0 8.8 76 651-726 12-87 (118)
34 2uz1_A Benzaldehyde lyase; thi 99.4 2.9E-12 1E-16 148.3 15.2 178 185-431 369-547 (563)
35 1ozh_A ALS, acetolactate synth 99.3 3E-11 1E-15 140.1 16.7 175 186-433 371-546 (566)
36 1t9b_A Acetolactate synthase, 99.2 7.1E-12 2.4E-16 148.2 7.3 130 250-437 510-644 (677)
37 1ybh_A Acetolactate synthase, 99.2 9.4E-12 3.2E-16 144.9 7.9 142 250-436 423-564 (590)
38 2iht_A Carboxyethylarginine sy 99.2 1.8E-11 6E-16 142.1 8.7 127 250-430 433-561 (573)
39 1q6z_A BFD, BFDC, benzoylforma 99.2 1.8E-11 6.1E-16 140.6 7.2 127 251-431 400-526 (528)
40 2vk8_A Pyruvate decarboxylase 99.2 2E-11 6.8E-16 141.3 6.7 131 250-432 410-544 (563)
41 2pgn_A Cyclohexane-1,2-dione h 99.1 4E-11 1.4E-15 139.6 8.1 180 185-437 374-554 (589)
42 3eya_A Pyruvate dehydrogenase 99.1 6.3E-11 2.1E-15 136.8 9.1 178 184-433 355-532 (549)
43 1v5e_A Pyruvate oxidase; oxido 99.1 8E-11 2.7E-15 137.1 9.9 130 250-432 410-541 (590)
44 2pan_A Glyoxylate carboligase; 99.1 5.9E-11 2E-15 138.9 8.7 139 250-434 439-584 (616)
45 1ovm_A Indole-3-pyruvate decar 99.1 5.3E-11 1.8E-15 137.3 6.9 126 250-432 405-534 (552)
46 2vbi_A Pyruvate decarboxylase; 99.1 8.9E-11 3E-15 136.0 8.2 126 251-434 407-537 (566)
47 2vbf_A Branched-chain alpha-ke 99.1 1.3E-10 4.6E-15 134.6 7.5 126 250-432 422-553 (570)
48 2wvg_A PDC, pyruvate decarboxy 99.0 1.6E-10 5.4E-15 133.9 7.5 126 251-434 411-545 (568)
49 2c31_A Oxalyl-COA decarboxylas 99.0 2.9E-10 1E-14 131.7 9.3 126 251-433 424-550 (568)
50 2nxw_A Phenyl-3-pyruvate decar 99.0 1.8E-10 6.1E-15 133.5 7.2 124 251-432 420-544 (565)
51 3hww_A 2-succinyl-5-enolpyruvy 99.0 2.6E-10 9E-15 131.8 8.2 126 251-431 415-540 (556)
52 2q28_A Oxalyl-COA decarboxylas 99.0 5.3E-10 1.8E-14 129.4 10.7 125 251-432 419-546 (564)
53 2x7j_A 2-succinyl-5-enolpyruvy 99.0 3.3E-10 1.1E-14 132.3 7.2 130 251-432 453-582 (604)
54 3lq1_A 2-succinyl-5-enolpyruvy 98.9 8.2E-10 2.8E-14 128.3 7.3 129 256-437 439-567 (578)
55 2c42_A Pyruvate-ferredoxin oxi 97.9 1.4E-05 4.8E-10 99.9 8.0 115 275-429 953-1069(1231)
56 1v5e_A Pyruvate oxidase; oxido 92.2 0.87 3E-05 52.6 12.8 113 508-626 45-165 (590)
57 2pan_A Glyoxylate carboligase; 91.8 1.5 5.2E-05 50.7 14.4 113 508-625 67-188 (616)
58 2iht_A Carboxyethylarginine sy 91.5 1.7 5.7E-05 49.9 14.1 115 507-625 49-171 (573)
59 2uz1_A Benzaldehyde lyase; thi 91.2 1 3.6E-05 51.5 12.0 120 500-625 36-164 (563)
60 2wvg_A PDC, pyruvate decarboxy 91.2 2.3 7.9E-05 48.6 14.9 114 508-625 43-169 (568)
61 1ozh_A ALS, acetolactate synth 91.1 1.1 3.6E-05 51.5 12.0 115 508-625 50-170 (566)
62 1ybh_A Acetolactate synthase, 91.1 0.92 3.1E-05 52.3 11.4 113 508-625 52-172 (590)
63 3eya_A Pyruvate dehydrogenase 90.2 2.4 8.1E-05 48.4 13.7 113 508-625 43-162 (549)
64 2vbi_A Pyruvate decarboxylase; 90.2 2.1 7.2E-05 48.9 13.3 114 508-626 43-170 (566)
65 2nxw_A Phenyl-3-pyruvate decar 89.7 2 6.9E-05 49.2 12.6 151 465-625 21-186 (565)
66 2pgn_A Cyclohexane-1,2-dione h 89.3 1.5 5.3E-05 50.4 11.3 113 508-625 45-165 (589)
67 1t9b_A Acetolactate synthase, 89.2 2 7E-05 50.4 12.4 112 508-624 122-241 (677)
68 4feg_A Pyruvate oxidase; carba 88.0 2.9 9.8E-05 48.3 12.4 112 508-625 52-171 (603)
69 2vbf_A Branched-chain alpha-ke 87.6 3.4 0.00012 47.2 12.6 113 508-625 65-190 (570)
70 1q6z_A BFD, BFDC, benzoylforma 86.4 4.4 0.00015 45.8 12.6 114 508-625 40-161 (528)
71 3hww_A 2-succinyl-5-enolpyruvy 85.7 8.8 0.0003 43.7 14.7 148 470-625 9-171 (556)
72 3lq1_A 2-succinyl-5-enolpyruvy 85.1 6.8 0.00023 44.8 13.5 147 471-625 13-178 (578)
73 2x7j_A 2-succinyl-5-enolpyruvy 83.7 4.2 0.00014 46.9 10.9 114 508-625 71-198 (604)
74 2vk8_A Pyruvate decarboxylase 82.8 16 0.00054 41.5 15.2 114 508-626 44-171 (563)
75 2c31_A Oxalyl-COA decarboxylas 82.2 9.3 0.00032 43.6 12.9 115 507-625 48-171 (568)
76 2q28_A Oxalyl-COA decarboxylas 80.3 12 0.0004 42.6 12.9 116 507-625 46-169 (564)
77 1ovm_A Indole-3-pyruvate decar 76.3 20 0.00068 40.6 13.2 117 506-625 42-170 (552)
78 1w85_A Pyruvate dehydrogenase 72.0 9.1 0.00031 41.5 8.5 102 518-622 146-263 (368)
79 2bfd_A 2-oxoisovalerate dehydr 71.5 7.7 0.00026 42.6 7.8 101 520-622 168-283 (400)
80 3ipz_A Monothiol glutaredoxin- 70.2 6.5 0.00022 34.6 5.7 70 652-722 17-91 (109)
81 1gpu_A Transketolase; transfer 69.6 12 0.00042 43.8 9.5 89 532-623 149-247 (680)
82 2r8o_A Transketolase 1, TK 1; 68.2 14 0.00048 43.3 9.5 88 533-623 148-244 (669)
83 1r9j_A Transketolase; domains, 67.7 17 0.0006 42.5 10.2 89 532-623 149-247 (673)
84 1umd_A E1-alpha, 2-OXO acid de 66.2 18 0.00061 39.1 9.2 108 511-622 142-265 (367)
85 2wci_A Glutaredoxin-4; redox-a 65.1 8.1 0.00028 35.8 5.4 67 653-720 35-106 (135)
86 3m49_A Transketolase; alpha-be 63.5 21 0.00071 42.0 9.7 89 532-623 173-270 (690)
87 3zyw_A Glutaredoxin-3; metal b 62.8 11 0.00038 33.4 5.7 76 652-730 15-95 (111)
88 1qs0_A 2-oxoisovalerate dehydr 60.0 15 0.00052 40.4 7.3 100 520-622 187-303 (407)
89 1wik_A Thioredoxin-like protei 59.4 8.2 0.00028 33.8 4.2 68 652-720 14-86 (109)
90 3kom_A Transketolase; rossmann 58.1 26 0.00089 41.0 9.3 89 532-623 149-246 (663)
91 2e6k_A Transketolase; structur 58.0 32 0.0011 40.1 10.0 88 532-623 151-247 (651)
92 1qs0_B 2-oxoisovalerate dehydr 56.8 32 0.0011 36.4 9.1 38 387-429 138-176 (338)
93 1itz_A Transketolase; calvin c 55.9 36 0.0012 39.8 10.1 89 532-623 160-258 (675)
94 2o1x_A 1-deoxy-D-xylulose-5-ph 54.2 28 0.00097 40.3 8.7 27 596-623 260-286 (629)
95 1aba_A Glutaredoxin; electron 54.0 19 0.00064 29.8 5.3 59 663-721 13-82 (87)
96 2ozl_A PDHE1-A type I, pyruvat 51.8 19 0.00066 38.9 6.4 101 519-622 145-259 (365)
97 3uk1_A Transketolase; structur 50.7 30 0.001 40.8 8.2 88 532-623 188-284 (711)
98 2lqo_A Putative glutaredoxin R 50.3 18 0.0006 31.1 4.7 73 653-730 4-83 (92)
99 3l84_A Transketolase; TKT, str 48.9 32 0.0011 40.0 7.9 100 519-623 119-239 (632)
100 3qmx_A Glutaredoxin A, glutare 48.5 18 0.00063 31.1 4.5 68 653-722 16-85 (99)
101 2wem_A Glutaredoxin-related pr 47.6 26 0.00089 31.4 5.6 69 652-721 19-93 (118)
102 3rim_A Transketolase, TK; TPP, 45.9 51 0.0018 38.8 9.1 88 533-623 170-266 (700)
103 2o1s_A 1-deoxy-D-xylulose-5-ph 45.1 84 0.0029 36.2 10.8 50 258-315 373-423 (621)
104 3gx8_A Monothiol glutaredoxin- 43.5 24 0.00081 31.7 4.6 66 652-721 15-91 (121)
105 1t1v_A SH3BGRL3, SH3 domain-bi 41.3 17 0.00057 30.7 3.0 73 654-730 3-84 (93)
106 3kkj_A Amine oxidase, flavin-c 38.1 21 0.00072 33.7 3.6 31 653-686 3-33 (336)
107 2bfd_B 2-oxoisovalerate dehydr 37.2 78 0.0027 33.6 8.2 37 387-428 154-191 (342)
108 1w85_B Pyruvate dehydrogenase 36.4 1.2E+02 0.0042 31.7 9.5 45 258-311 62-117 (324)
109 2yan_A Glutaredoxin-3; oxidore 36.1 33 0.0011 29.4 4.2 68 653-721 17-89 (105)
110 1ik6_A Pyruvate dehydrogenase; 35.9 1.4E+02 0.0047 32.1 10.0 49 258-314 110-168 (369)
111 3mos_A Transketolase, TK; thia 35.7 1.1E+02 0.0039 35.2 9.8 99 519-623 126-239 (616)
112 3rhb_A ATGRXC5, glutaredoxin-C 35.1 69 0.0023 27.6 6.2 69 653-722 19-91 (113)
113 2ct6_A SH3 domain-binding glut 34.7 28 0.00094 30.6 3.5 65 654-720 9-88 (111)
114 3rpe_A MDAB, modulator of drug 34.1 1E+02 0.0035 30.6 8.0 60 665-726 47-106 (218)
115 2vzf_A NADH-dependent FMN redu 33.1 65 0.0022 30.9 6.3 66 663-728 18-94 (197)
116 2qtc_A Pyruvate dehydrogenase 32.4 2E+02 0.0068 34.8 11.5 51 544-596 237-291 (886)
117 3rdw_A Putative arsenate reduc 30.9 43 0.0015 30.1 4.2 49 655-705 7-55 (121)
118 3fz4_A Putative arsenate reduc 30.9 56 0.0019 29.3 5.0 48 655-704 5-52 (120)
119 1fov_A Glutaredoxin 3, GRX3; a 30.9 83 0.0029 24.8 5.7 70 655-728 3-74 (82)
120 2ozl_B PDHE1-B, pyruvate dehyd 30.4 1.7E+02 0.0059 30.9 9.5 49 258-315 74-132 (341)
121 2q62_A ARSH; alpha/beta, flavo 29.1 72 0.0025 32.3 6.0 64 665-728 52-123 (247)
122 3lyu_A Putative hydrogenase; t 28.8 69 0.0024 29.3 5.3 59 643-701 9-68 (142)
123 2khp_A Glutaredoxin; thioredox 27.4 92 0.0032 25.4 5.5 64 654-720 7-72 (92)
124 2jgd_A 2-oxoglutarate dehydrog 26.9 1.4E+02 0.0049 36.2 8.9 109 510-622 318-452 (933)
125 1sqs_A Conserved hypothetical 26.8 91 0.0031 30.9 6.2 67 662-728 16-104 (242)
126 1rw1_A Conserved hypothetical 26.6 48 0.0017 29.2 3.7 49 655-705 2-50 (114)
127 3l4e_A Uncharacterized peptida 26.2 1.2E+02 0.0041 29.8 6.8 55 652-709 27-85 (206)
128 3l78_A Regulatory protein SPX; 25.8 1E+02 0.0035 27.4 5.7 41 662-703 8-48 (120)
129 1umd_B E1-beta, 2-OXO acid deh 25.4 2.7E+02 0.0093 28.9 9.9 46 258-311 63-118 (324)
130 3llv_A Exopolyphosphatase-rela 25.3 1.4E+02 0.0046 26.5 6.6 32 652-686 6-37 (141)
131 2ab1_A Hypothetical protein; H 25.3 20 0.00067 32.7 0.8 39 649-687 58-98 (122)
132 3h8q_A Thioredoxin reductase 3 25.1 1.8E+02 0.0062 25.1 7.2 67 652-721 16-87 (114)
133 3fwz_A Inner membrane protein 24.8 1.4E+02 0.0047 26.7 6.6 32 653-687 8-39 (140)
134 2kok_A Arsenate reductase; bru 23.3 60 0.002 28.9 3.7 49 655-705 7-55 (120)
135 1u6t_A SH3 domain-binding glut 23.2 49 0.0017 30.1 3.0 55 666-721 18-81 (121)
136 3hly_A Flavodoxin-like domain; 22.8 1.4E+02 0.0046 27.7 6.3 52 657-711 4-59 (161)
137 2amj_A Modulator of drug activ 22.3 1.3E+02 0.0046 29.1 6.3 60 666-727 35-94 (204)
138 2hze_A Glutaredoxin-1; thiored 22.3 1.6E+02 0.0054 25.4 6.2 66 653-720 19-91 (114)
139 4dik_A Flavoprotein; TM0755, e 21.8 2E+02 0.0069 31.2 8.2 71 656-726 268-342 (410)
140 3ic4_A Glutaredoxin (GRX-1); s 21.8 1E+02 0.0035 25.1 4.7 67 654-721 13-84 (92)
141 1kte_A Thioltransferase; redox 21.7 1.3E+02 0.0045 25.0 5.5 64 654-719 13-83 (105)
142 5nul_A Flavodoxin; electron tr 21.5 1.2E+02 0.0041 26.9 5.4 29 661-689 10-38 (138)
143 3gkx_A Putative ARSC family re 21.2 1.1E+02 0.0037 27.3 4.9 48 655-704 6-53 (120)
144 3u7r_A NADPH-dependent FMN red 21.2 1.5E+02 0.0052 28.6 6.4 63 664-726 18-90 (190)
145 1z3e_A Regulatory protein SPX; 21.0 1.7E+02 0.0058 26.3 6.3 47 655-703 3-49 (132)
146 3f2v_A General stress protein 20.8 1.4E+02 0.0049 28.9 6.1 63 666-728 18-83 (192)
147 1v95_A Nuclear receptor coacti 20.6 2.5E+02 0.0086 25.7 7.3 58 654-712 10-69 (130)
148 2yic_A 2-oxoglutarate decarbox 20.6 2.9E+02 0.0099 33.3 9.8 81 539-622 287-380 (868)
149 1t0i_A YLR011WP; FMN binding p 20.5 1.5E+02 0.0051 27.8 6.2 68 661-728 14-109 (191)
150 3ibs_A Conserved hypothetical 20.4 91 0.0031 29.8 4.6 55 257-312 92-148 (218)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=6.3e-109 Score=969.26 Aligned_cols=593 Identities=41% Similarity=0.678 Sum_probs=507.3
Q ss_pred CCCCccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHH
Q 004227 137 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYV 216 (767)
Q Consensus 137 ~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~ 216 (767)
.+.||+|++|+.|.|+|+++.++|+++++++|+.+++++++++||+|+++|+++++.+||++|+.|+|+||||+||++|+
T Consensus 7 ~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~ 86 (629)
T 2o1x_A 7 TSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYA 86 (629)
T ss_dssp CCSCTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHHTTSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEESSSTTCHH
T ss_pred CCCCchhhhCCChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCcCCCchhHHHHHHHHHhhcCCCCCeEEecCchHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999987999999999999999
Q ss_pred HHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHH
Q 004227 217 HKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAM 296 (767)
Q Consensus 217 ~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAl 296 (767)
|++++|+.+.+.++||.+|++|||++.+++++.+++|++|+++|+|+|+|+|+|+++++++|||++|||++++|++||||
T Consensus 87 ~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 87 HKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp HHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh
Q 004227 297 NNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR 376 (767)
Q Consensus 297 n~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r 376 (767)
|+|+++++|+++|+|||++ ++ ..+++.++..+++++.++.|..+|...+.+.+.+|.+..+...+..+++|
T Consensus 167 ~~A~~~~~pli~IvnnN~~-~i--------~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 237 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEM-SI--------SENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTR 237 (629)
T ss_dssp HHHHHHCCSEEEEEEECSB-SS--------SBCCSSHHHHC---------------------------------------
T ss_pred HHHHhhCCCEEEEEECCCC-CC--------CCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999999999999985 22 22344556677777778888888887777665555444444444444555
Q ss_pred hccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccccccCcccc
Q 004227 377 GLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGK 456 (767)
Q Consensus 377 ~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd~~~g~ 456 (767)
+++.+.+..+|++|||.+++++||||+++|.++++++++ .++|++|+++|.||+|++++|+++.+||+.++|++.++.
T Consensus 238 ~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~ 315 (629)
T 2o1x_A 238 HFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGE 315 (629)
T ss_dssp ------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCC
T ss_pred hhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCc
Confidence 554442237899999999888999999999999999986 479999999999999999999998899999999998875
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEEe
Q 004227 457 QFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCA 536 (767)
Q Consensus 457 ~~~~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~ 536 (767)
..+. +..+|+++|+++|.+++++|++++++++|+++++++..|+++||+||||+||+|++|+++|+|+|++|+|||++
T Consensus 316 ~~~~--~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~ 393 (629)
T 2o1x_A 316 YVPS--SAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVA 393 (629)
T ss_dssp BCCC--CCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccc--chHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEE
Confidence 4222 26799999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred echhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCC
Q 004227 537 IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDR 616 (767)
Q Consensus 537 tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~ 616 (767)
+|++|++|++||+++++|++++||+++++++|++|+||+|||+.+|+++||++||++|++|+|++|+++++++|++. ++
T Consensus 394 ~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~-~~ 472 (629)
T 2o1x_A 394 IYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-DG 472 (629)
T ss_dssp EEHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS-SS
T ss_pred ecHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC-CC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999984 79
Q ss_pred CEEEEecCCCCcccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHH
Q 004227 617 PSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL 696 (767)
Q Consensus 617 P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~ 696 (767)
|++||++|++....+. ...+.+++|+++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||+++
T Consensus 473 Pv~i~~~r~~~~~~~~---~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~ 545 (629)
T 2o1x_A 473 PFAIRYPRGNTAQVPA---GTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEM 545 (629)
T ss_dssp CEEEECCSSBCCCCCT---TCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHH
T ss_pred CEEEEecCCCCCCCcc---cccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHH
Confidence 9999999987533211 1234578999999999999999999999999999999996 89999999999999999
Q ss_pred HHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccccc
Q 004227 697 IRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCRL 753 (767)
Q Consensus 697 i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~~ 753 (767)
+.+++++++++|||||+. .||||++|++++.++++ +.+++++|+||.|+++...
T Consensus 546 i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~ 600 (629)
T 2o1x_A 546 LREVGGRARALITVEDNTVVGGFGGAVLEALNSMNL---HPTVRVLGIPDEFQEHATA 600 (629)
T ss_dssp HHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTTC---CCEEEEEEECSSCCCSCCH
T ss_pred HHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhCC---CCCeEEEeeCCcCCCCCCH
Confidence 999999999999999997 69999999999999885 3689999999999987643
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.8e-108 Score=962.83 Aligned_cols=592 Identities=47% Similarity=0.787 Sum_probs=481.5
Q ss_pred CCCCCccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHH
Q 004227 136 EKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAY 215 (767)
Q Consensus 136 ~~~~~~~l~~i~~p~~~k~~~~~~L~~la~~iR~~i~~~v~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y 215 (767)
+.|.+|+|++|+.|.|+|+++.++|+++|+++|+.+++++++++||+|+++|++|++++||++|+.|+|+||||+|||+|
T Consensus 4 ~~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y 83 (621)
T 2o1s_A 4 DIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAY 83 (621)
T ss_dssp CTTTSTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHSCGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCH
T ss_pred CCCCCchhhhcCChHHhhhCCHHHHHHHHHHHHHHHHHHHhhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHH
Confidence 34788999999999999999999999999999999999999899999999999999999999998799999999999999
Q ss_pred HHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHH
Q 004227 216 VHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA 295 (767)
Q Consensus 216 ~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EA 295 (767)
+|++++|+.+++.++||.+|++|||++.+++++.|++|++|+++|+|+|+|+|+++++++++|||++|||++++|++|||
T Consensus 84 ~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~Ea 163 (621)
T 2o1s_A 84 PHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEA 163 (621)
T ss_dssp HHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHH
T ss_pred HHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHH
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 004227 296 MNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (767)
Q Consensus 296 ln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~ 375 (767)
||+|+++++|+++|+|||++ ++ ..+++.++.++++++.++.|..+|...+.+.+..+. ..++..+..+++
T Consensus 164 L~~A~~~~~pli~vvnnN~~-~i--------~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~-~~~~~~r~~~~~ 233 (621)
T 2o1s_A 164 MNHAGDIRPDMLVILNDNEM-SI--------SENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPP-IKELLKRTEEHI 233 (621)
T ss_dssp HHHHHHHCCSEEEEEEECC-------------------------------------------------------------
T ss_pred HHHHHhhCCCEEEEEeCCCc-cc--------CCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccch-HHHHHHHHHHHh
Confidence 99999999999999999985 22 123344455677777788887777665544322110 023444444555
Q ss_pred hhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccccccCccc
Q 004227 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTG 455 (767)
Q Consensus 376 r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd~~~g 455 (767)
+++..+ ..+|++|||++++++||||+++|.++++++++ .++|++|+++|.||+|++++|+++.+||+.++|++.++
T Consensus 234 ~~~~~p--~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~ 309 (621)
T 2o1s_A 234 KGMVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSG 309 (621)
T ss_dssp -----C--HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCCTTCCCCC------------------
T ss_pred hhccCh--hhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEecccCCChhhcCchhccCCCCCCCCcC
Confidence 554432 47899999999888999999999999999987 47999999999999999999988889999999999887
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCCeeEE
Q 004227 456 KQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGVKPFC 535 (767)
Q Consensus 456 ~~~~~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~ 535 (767)
++.+.+....+|+++|+++|.+++++|++|+++++|+.+++++..|+++||+||||+||+|++|+++|+|+|++|+|||+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~ 389 (621)
T 2o1s_A 310 CLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIV 389 (621)
T ss_dssp --------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEEE
Confidence 64223334569999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCC
Q 004227 536 AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDD 615 (767)
Q Consensus 536 ~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~ 615 (767)
++|++|++|++||+++++|++++||+++++++|++|+||+|||+.+|+++||++||++|++|+|++|+++++++|++..+
T Consensus 390 ~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~ 469 (621)
T 2o1s_A 390 AIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYND 469 (621)
T ss_dssp EEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCCS
T ss_pred EehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999998658
Q ss_pred CCEEEEecCCCCcccccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHH
Q 004227 616 RPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTD 695 (767)
Q Consensus 616 ~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e 695 (767)
+|++||++|++....+.|+ . +.+++|+++++++|+|++||++|++++.|++| ++||+++|||++|++|||++
T Consensus 470 ~Pv~i~~~r~~~~~~~~~~--~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~ 541 (621)
T 2o1s_A 470 GPSAVRYPRGNAVGVELTP--L-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEA 541 (621)
T ss_dssp SCEEEECCSSBCCCCCCCC--C-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHH
T ss_pred CCEEEEeCCCCCCCCCCCc--c-ccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHH
Confidence 9999999998754333332 2 56789999999999999999999999999999 45999999999999999999
Q ss_pred HHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 696 LIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 696 ~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
++.+++++++++|||||+. .||||++|++++.++++ +.+++++|+||.|+++..
T Consensus 542 ~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~ 596 (621)
T 2o1s_A 542 LILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRK---PVPVLNIGLPDFFIPQGT 596 (621)
T ss_dssp HHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTTC---CCCEEEEEECSSCCCCSC
T ss_pred HHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcCC---CCCeEEEecCCcCCCCCC
Confidence 9999999999999999997 69999999999999885 357899999999998764
No 3
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.2e-96 Score=861.26 Aligned_cols=530 Identities=25% Similarity=0.400 Sum_probs=457.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHh-h----cCCC----CcEEEeCCCChH---HH
Q 004227 150 IHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR-V----FNTP----DDKIIWDVGHQA---YV 216 (767)
Q Consensus 150 ~~~k~~~~~~L~~la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~-~----~~~p----~Dr~i~s~GH~~---y~ 216 (767)
+.+.+.++++|+++|++||.++++|+++ ++||+|++||++||+++||+ + +++| +||||||+||++ |+
T Consensus 3 ~~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly~ 82 (616)
T 3mos_A 3 HKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYA 82 (616)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHHH
Confidence 4567788999999999999999999976 56999999999999999984 2 3333 899999999999 89
Q ss_pred HHHHhCC--hHHhHHHHhcC-CCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC-CCeEEEEEcCCcccCcch
Q 004227 217 HKILTGR--RSRMNTMRKTS-GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK-NNNVISVIGDGAMTAGQA 292 (767)
Q Consensus 217 ~~~l~G~--~~~l~tlr~~g-gl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~-~~~Vv~viGDGal~eG~~ 292 (767)
+++++|+ +++|.+|||.| +++|||++.++.++ +++|++|+++|+|+|+|+|.++++. +++|||++|||++++|++
T Consensus 83 ~~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~d-~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~ 161 (616)
T 3mos_A 83 VWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTD-VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSV 161 (616)
T ss_dssp HHHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTCS-SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHH
T ss_pred HHHHcCCCCHHHHHHhccCCCCCCCCCCCCCCccc-ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcH
Confidence 9999996 68899999998 69999998876655 6999999999999999999987666 699999999999999999
Q ss_pred HHHHHHHHHcCC-CEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHH
Q 004227 293 YEAMNNAGFLDA-NLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (767)
Q Consensus 293 ~EAln~A~~~~~-nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k 370 (767)
|||+|+|+++++ |+++|+|||++ ++.++... . ...++.+
T Consensus 162 ~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~-------~-------------------------------~~~~~~~- 202 (616)
T 3mos_A 162 WEAMAFASIYKLDNLVAILDINRLGQSDPAPLQ-------H-------------------------------QMDIYQK- 202 (616)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTT-------T-------------------------------CHHHHHH-
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCCCcCCcccc-------c-------------------------------ChHHHHH-
Confidence 999999999995 68899999985 33222110 0 1123333
Q ss_pred HHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhcccccccccc-
Q 004227 371 VDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVK- 449 (767)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~- 449 (767)
+|++|||+++ +|||||+++|.++++++ .++|++|+++|.||+|++.+| ++.+|||.+.
T Consensus 203 ---------------~~~a~G~~~~-~VdG~d~~~l~~al~~~----~~~P~lI~v~T~kg~G~~~~e-~~~~~Hg~~~~ 261 (616)
T 3mos_A 203 ---------------RCEAFGWHAI-IVDGHSVEELCKAFGQA----KHQPTAIIAKTFKGRGITGVE-DKESWHGKPLP 261 (616)
T ss_dssp ---------------HHHHTTCEEE-EEETTCHHHHHHHHHSC----CSSCEEEEEECCTTTTSTTTT-TCSSCTTCCCC
T ss_pred ---------------HHHHcCCeEE-EEcCCCHHHHHHHHHhc----CCCCEEEEEEEeccccccccc-CchhhcCCCCC
Confidence 3999999998 89999999999999654 378999999999999998776 5579999752
Q ss_pred ----------ccC--ccccccC------------------------CCCcchhHHHHHHHHHHHHHHhCCCEEEEecccc
Q 004227 450 ----------FDP--KTGKQFK------------------------TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMG 493 (767)
Q Consensus 450 ----------fd~--~~g~~~~------------------------~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~ 493 (767)
++. ++++... ......+++++|+++|.+++++||+++++++|++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~ 341 (616)
T 3mos_A 262 KNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTK 341 (616)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCH
T ss_pred HHHHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcC
Confidence 110 1221110 0112346789999999999999999999999999
Q ss_pred CCcChhhhhhhCCCcEEeccccHHHHHHHHHHHHhcCC-eeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cC
Q 004227 494 GGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLASEGV-KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VG 571 (767)
Q Consensus 494 gs~gl~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~G~-rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G 571 (767)
+++++..|+++||+||||+||+|++|+++|+|+|++|. +|++++|++|++|++|||++. +++++||+++++++|+ +|
T Consensus 342 ~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi~~~-a~~~~~v~~v~~~~g~~~G 420 (616)
T 3mos_A 342 NSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMA-AISESNINLCGSHCGVSIG 420 (616)
T ss_dssp HHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHHHHH-HHTTCCEEEEEESBSGGGC
T ss_pred CCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHHHHH-HHhCCCeEEEEECCCcccc
Confidence 88889999999999999999999999999999999997 799999999999999999875 8999999999999998 89
Q ss_pred CCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEecCCCCcccccCCCCCCCCcccCceeEeec
Q 004227 572 ADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME 651 (767)
Q Consensus 572 ~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~e 651 (767)
+||+|||+.+|+++|+++||++|++|+|++|+..++++|++ .++|+++|++|++.+.. .. ....+++||++++++
T Consensus 421 ~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~--~~--~~~~~~~Gka~vl~e 495 (616)
T 3mos_A 421 EDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAII--YN--NNEDFQVGQAKVVLK 495 (616)
T ss_dssp TTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCC--SC--TTCCCCTTCCEEEEC
T ss_pred CCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCcc--CC--CcccccCCeEEEEEe
Confidence 99999999999999999999999999999999999999986 57999999999764321 11 234677999999999
Q ss_pred CCc--EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC-CEEEEEcCCC-CCCHHHHHHHHHH
Q 004227 652 GDR--VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGS-VGGFGSHVCHFLT 727 (767)
Q Consensus 652 G~d--vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~-~~vVvvEe~~-~GGlgs~I~~~l~ 727 (767)
|+| ++||++|++++.|++|+++|+++||+++|||++|++|||+++|.++++++ ++|||+||+. .||+|++|++++.
T Consensus 496 g~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~ 575 (616)
T 3mos_A 496 SKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVV 575 (616)
T ss_dssp CSSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHT
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHH
Confidence 976 99999999999999999999999999999999999999999999999888 9999999997 6999999999999
Q ss_pred hcCCCCCCceEEEEecCCcccccc
Q 004227 728 LSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 728 ~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
+++ +.+++++|+|| |.++.
T Consensus 576 ~~~----~~~v~~~g~~~-f~~~g 594 (616)
T 3mos_A 576 GEP----GITVTHLAVNR-VPRSG 594 (616)
T ss_dssp TCT----TCEEEEEEECS-CCCCS
T ss_pred hcC----CCCEEEEeCCC-CCCCC
Confidence 875 36899999995 76543
No 4
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=1e-94 Score=844.16 Aligned_cols=514 Identities=21% Similarity=0.320 Sum_probs=439.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHhhcC-C-------CCcEEEeCCCChH---HHHHHHhC
Q 004227 155 LSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHRVFN-T-------PDDKIIWDVGHQA---YVHKILTG 222 (767)
Q Consensus 155 ~~~~~L~~la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~~~~-~-------p~Dr~i~s~GH~~---y~~~~l~G 222 (767)
|++++|+++|++||+++++|+++ ++||+|++||++|++++||++|+ + ++||||||+||++ |+|++|+|
T Consensus 1 ~~~~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G 80 (632)
T 3l84_A 1 MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG 80 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhC
Confidence 56789999999999999999986 89999999999999999988775 2 4899999999999 99999999
Q ss_pred Ch---HHhHHHHhcCCC-CCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC-------CCeEEEEEcCCcccCcc
Q 004227 223 RR---SRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK-------NNNVISVIGDGAMTAGQ 291 (767)
Q Consensus 223 ~~---~~l~tlr~~ggl-~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~-------~~~Vv~viGDGal~eG~ 291 (767)
++ ++|.+|||.|++ +|||++ +++++.+++|++|+++|+|+|||+|.++++. +++|||++|||+++||+
T Consensus 81 ~~~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~ 159 (632)
T 3l84_A 81 YDLSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGI 159 (632)
T ss_dssp CSCCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHH
T ss_pred CCCCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhcc
Confidence 94 889999999985 799999 8999999999999999999999999998764 89999999999999999
Q ss_pred hHHHHHHHHHcCC-CEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHH
Q 004227 292 AYEAMNNAGFLDA-NLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAA 369 (767)
Q Consensus 292 ~~EAln~A~~~~~-nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~ 369 (767)
+|||+++|+++++ |+|+|+|||++ ++.++.... .+++.
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~---------------------------------------~~d~~- 199 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF---------------------------------------NENVK- 199 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC---------------------------------------CCCHH-
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc---------------------------------------ChhHH-
Confidence 9999999999995 69999999995 322211100 01222
Q ss_pred HHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc-
Q 004227 370 KVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV- 448 (767)
Q Consensus 370 k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~- 448 (767)
.+|++|||+++ +|||||+++|.++++++++ .++|++|+++|.||+|++++|+ ..+|||.+
T Consensus 200 ---------------~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~kG~G~~~~e~-~~~~Hg~~l 260 (632)
T 3l84_A 200 ---------------MRFEAQGFEVL-SINGHDYEEINKALEQAKK--STKPCLIIAKTTIAKGAGELEG-SHKSHGAPL 260 (632)
T ss_dssp ---------------HHHHHTTCEEE-EEETTCHHHHHHHHHHHHT--CSSCEEEEEECCTTTTCGGGTT-CGGGSSSCC
T ss_pred ---------------HHHHHcCCeEE-EEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEeeecCCCCCC-cccccCCCC
Confidence 34999999998 8999999999999999987 5899999999999999999775 47899986
Q ss_pred ------------------cccCcc------------ccc---------------------cCC----------CCcchhH
Q 004227 449 ------------------KFDPKT------------GKQ---------------------FKT----------KSPTLTY 467 (767)
Q Consensus 449 ------------------~fd~~~------------g~~---------------------~~~----------~~~~~s~ 467 (767)
+|+..+ ++. ++. .......
T Consensus 261 ~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~ 340 (632)
T 3l84_A 261 GEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLAT 340 (632)
T ss_dssp CHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCH
T ss_pred CHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHH
Confidence 454321 110 000 0124567
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeccccCCcChh-hhhhhC-CCcEEeccccHHHHHHHHHHHHhc-CCeeEEeechhHHHh
Q 004227 468 TQYFAESLIKEAETDDKIVAIHAAMGGGTGLN-YFQKRF-PDRCFDVGIAEQHAVTFAAGLASE-GVKPFCAIYSSFLQR 544 (767)
Q Consensus 468 ~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~-~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~tys~Fl~r 544 (767)
+++++++|.++++.+|+++++++|++++++.. .+.++| |+||||+||+||+|+++|+|||+. |+|||+++|++|++|
T Consensus 341 r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~ 420 (632)
T 3l84_A 341 RDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEY 420 (632)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHH
Confidence 88999999999999999999999998766443 123678 999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 545 GYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 545 a~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
+++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++||++|++|+|++|++.++++|++ +++|++||++
T Consensus 421 ~~~~i-r~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~ 498 (632)
T 3l84_A 421 LKPAA-RIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLS 498 (632)
T ss_dssp HHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECC
T ss_pred HHHHH-HHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEc
Confidence 99998 4689999999999977776 7999999999999999999999999999999999999999998 7899999999
Q ss_pred CCCCcccccCCCCCCCCcccCce-eEeec--CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHH--HH
Q 004227 624 RGNGIGAVLPPNNKGTPLEIGKG-RILME--GDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL--IR 698 (767)
Q Consensus 624 r~~~~~~~~p~~~~~~~~~igk~-~vl~e--G~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~--i~ 698 (767)
|++. ++.. .....+++++ +++++ |+|++||++|++++.|++|+++|+++||+++|||++|++|||++. +.
T Consensus 499 r~~~----~~~~-~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~ 573 (632)
T 3l84_A 499 RQKL----KALN-EPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQ 573 (632)
T ss_dssp SSCB----CCCC-CCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHH
T ss_pred CCCC----CCCc-cccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHH
Confidence 9875 2221 1233567776 89999 899999999999999999999999999999999999999999874 44
Q ss_pred HHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 699 QLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 699 ~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
+.+.+ +.|||||++...||++.+ . +++|+ |+|+++..
T Consensus 574 ~sv~~-~~vv~vE~~~~~g~~~~~--------------~-~~iGi-d~Fg~sg~ 610 (632)
T 3l84_A 574 ERLLK-GEVIGVEAAHSNELYKFC--------------H-KVYGI-ESFGESGK 610 (632)
T ss_dssp HHHCC-SEEEEECSSCCGGGGGTC--------------S-EEECC-CSCCCSSC
T ss_pred HHhcC-CCEEEEeCChhhhHHHHh--------------C-eEEEc-CCCcccCC
Confidence 55544 679999999988875321 1 67999 99998653
No 5
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8e-94 Score=842.49 Aligned_cols=520 Identities=19% Similarity=0.277 Sum_probs=444.3
Q ss_pred HHHHHHHH-HHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHh-hcC-C-------CCcEEEeCCCChH---HHHHHHhC
Q 004227 157 TEDLEQLA-AELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN-T-------PDDKIIWDVGHQA---YVHKILTG 222 (767)
Q Consensus 157 ~~~L~~la-~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~-~~~-~-------p~Dr~i~s~GH~~---y~~~~l~G 222 (767)
.++|+++| ++||.++++|+++ ++||+|++||++|++++||+ +|+ + ++||||||+||++ |++++|+|
T Consensus 19 ~~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 98 (700)
T 3rim_A 19 WTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGG 98 (700)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhC
Confidence 46799999 8999999999986 68999999999999999986 775 3 3899999999999 99999999
Q ss_pred C---hHHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHc-------------CCCCeEEEEEcCC
Q 004227 223 R---RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDIL-------------GKNNNVISVIGDG 285 (767)
Q Consensus 223 ~---~~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~-------------g~~~~Vv~viGDG 285 (767)
+ .++|.+|||.|+ ++|||++.+++++.+++|++|+++|+|+|||+|.|++ +.+++|||++|||
T Consensus 99 ~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 99 FGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp SSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred CCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 9 789999999998 6999998889999999999999999999999999985 5689999999999
Q ss_pred cccCcchHHHHHHHHHcCC-CEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCc
Q 004227 286 AMTAGQAYEAMNNAGFLDA-NLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQ 363 (767)
Q Consensus 286 al~eG~~~EAln~A~~~~~-nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~ 363 (767)
+++||++|||+|+|+++++ |||+|+|||++ ++.++... .
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~---------------------------------------~ 219 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIA---------------------------------------L 219 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT---------------------------------------C
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhc---------------------------------------c
Confidence 9999999999999999997 69999999995 33322210 0
Q ss_pred hHHHHHHHHHHHhhccCCChhhhHhhcCCeEeecc-CCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccc
Q 004227 364 THEVAAKVDEYARGLISASGSTFFEELGLYYIGPV-DGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAAD 442 (767)
Q Consensus 364 ~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~v-DGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~ 442 (767)
.+++.++ |++|||+++ .| ||||+++|.++++++++. .++|++|+++|.||+|++++|+. .
T Consensus 220 ~~~~~~~----------------~~a~G~~~~-~V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~kG~G~~~~e~~-~ 280 (700)
T 3rim_A 220 CEDTAAR----------------YRAYGWHVQ-EVEGGENVVGIEEAIANAQAV-TDRPSFIALRTVIGYPAPNLMDT-G 280 (700)
T ss_dssp CCCHHHH----------------HHHHTCEEE-EEECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTS-H
T ss_pred chhHHHH----------------HHHcCCeEE-EECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEeeecCCccCCC-c
Confidence 1233443 999999998 57 999999999999999863 57999999999999999999865 6
Q ss_pred ccccccc-------------------ccCcc------------cc------------------------------ccCC-
Q 004227 443 RMHGVVK-------------------FDPKT------------GK------------------------------QFKT- 460 (767)
Q Consensus 443 ~~Hg~~~-------------------fd~~~------------g~------------------------------~~~~- 460 (767)
+|||.+. |+..+ |+ .++.
T Consensus 281 ~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~ 360 (700)
T 3rim_A 281 KAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDG 360 (700)
T ss_dssp HHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTT
T ss_pred cccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcc
Confidence 7998653 43211 10 0110
Q ss_pred ----------CCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcC-----hhhhhhhC------C----CcEEecccc
Q 004227 461 ----------KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTG-----LNYFQKRF------P----DRCFDVGIA 515 (767)
Q Consensus 461 ----------~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~g-----l~~f~~~~------P----~R~~d~GIa 515 (767)
..+..+++++++++|.+++++||+++++++|++++++ +..|+++| | +||||+||+
T Consensus 361 ~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIa 440 (700)
T 3rim_A 361 WDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVR 440 (700)
T ss_dssp TTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSC
T ss_pred hhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCcc
Confidence 0134578999999999999999999999999987765 46898888 8 599999999
Q ss_pred HHHHHHHHHHHHhc-CCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcE
Q 004227 516 EQHAVTFAAGLASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMV 593 (767)
Q Consensus 516 E~~~vg~AaGlA~~-G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~ 593 (767)
||+|+++|+|||+. |++||+++|+.|+.++++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+
T Consensus 441 E~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~i-r~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~ 519 (700)
T 3rim_A 441 EHAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAV-RLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLS 519 (700)
T ss_dssp HHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCE
Confidence 99999999999999 99999999999999999996 5689999999999987776 799999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHhhCC--CCEEEEecCCCCcccccCCCCCCCCcccCceeEeecCC--------cEEEEEechh
Q 004227 594 VMAPSDEAELMHMVATAAVIDD--RPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD--------RVAILGYGSI 663 (767)
Q Consensus 594 V~~Psd~~E~~~~l~~A~~~~~--~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~--------dvtIva~Gs~ 663 (767)
|++|+|++|++.++++|++..+ +|++||++|++.+. ++.. ..+.+++|+ +++++|+ |++||++|++
T Consensus 520 V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~-~~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~ 595 (700)
T 3rim_A 520 VVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV--LDGT-DAEGVARGG-YVLSDAGGLQPGEEPDVILIATGSE 595 (700)
T ss_dssp EECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTC-CHHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGG
T ss_pred EEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC--cCcc-cccccCCCc-EEEecCCccccCCCCCEEEEEechH
Confidence 9999999999999999998666 79999999987432 2221 124567787 8999987 9999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccCCCCcH---HHHHHHhcc-CCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEE
Q 004227 664 VQQCVLAANMLKSQDISVTVADARFCKPLDT---DLIRQLANE-HEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVF 739 (767)
Q Consensus 664 v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~---e~i~~~~~~-~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~ 739 (767)
+++|++|++.|+++||+++|||++|++|||. +++.+++++ ++.+|+||++...||. +++.+++ +
T Consensus 596 v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~----~~~~~~~--------~ 663 (700)
T 3rim_A 596 VQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWH----QLVGDTG--------E 663 (700)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGH----HHHCTTC--------E
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHH----HHHhcCC--------c
Confidence 9999999999999999999999999999998 456666664 7889999999876664 4554443 5
Q ss_pred EEecCCccccccc
Q 004227 740 IFSLIQKLETDCR 752 (767)
Q Consensus 740 ~~gl~D~f~~~~~ 752 (767)
.+|+ |+|+++..
T Consensus 664 ~igi-d~Fg~sg~ 675 (700)
T 3rim_A 664 IVSI-EHYGESAD 675 (700)
T ss_dssp EECC-CSCCCSSC
T ss_pred EEcc-CcCcCcCC
Confidence 7899 99987653
No 6
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=2.6e-93 Score=838.72 Aligned_cols=530 Identities=20% Similarity=0.312 Sum_probs=436.2
Q ss_pred cCCCCCHHHHHHHH-HHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHh-hcC-C-------CCcEEEeCCCChH---HH
Q 004227 151 HMKNLSTEDLEQLA-AELRADIVNSVSK-TGGHLSANLGVVELTLALHR-VFN-T-------PDDKIIWDVGHQA---YV 216 (767)
Q Consensus 151 ~~k~~~~~~L~~la-~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~-~~~-~-------p~Dr~i~s~GH~~---y~ 216 (767)
-++|++.++|+++| ++||.++++|+++ ++||+|++||++|++++||+ +|+ + ++||||||+||++ |+
T Consensus 20 ~~~~~~~~~l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa 99 (690)
T 3m49_A 20 FQSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYS 99 (690)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHH
Confidence 46788888899999 8999999999975 89999999999999999984 654 1 4899999999999 99
Q ss_pred HHHHhCC---hHHhHHHHhcCCC-CCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC----------CCeEEEEE
Q 004227 217 HKILTGR---RSRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVI 282 (767)
Q Consensus 217 ~~~l~G~---~~~l~tlr~~ggl-~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~----------~~~Vv~vi 282 (767)
|++|+|+ .++|.+|||.|++ +|||++.+++++.+++|++|+++|+|+|||+|.++++. +++|||++
T Consensus 100 ~l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~ 179 (690)
T 3m49_A 100 LLHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAIC 179 (690)
T ss_dssp HHHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEE
T ss_pred HHHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEE
Confidence 9999999 7999999999985 69999989999999999999999999999999998763 89999999
Q ss_pred cCCcccCcchHHHHHHHHHcCC-CEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcC
Q 004227 283 GDGAMTAGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIG 361 (767)
Q Consensus 283 GDGal~eG~~~EAln~A~~~~~-nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g 361 (767)
|||+++||++|||+++|+++++ |+|+|+|||++ ++ ++.....
T Consensus 180 GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~-~i-----~~~~~~~------------------------------- 222 (690)
T 3m49_A 180 GDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDI-SL-----DGDLNRS------------------------------- 222 (690)
T ss_dssp CHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSB-CS-----SSBGGGT-------------------------------
T ss_pred CchhhhhccHHHHHHHHHHhCCCeEEEEEECCCe-ec-----ccchhhc-------------------------------
Confidence 9999999999999999999995 69999999995 32 2211100
Q ss_pred CchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhcc
Q 004227 362 GQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAA 441 (767)
Q Consensus 362 ~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~ 441 (767)
..+++. .+|++|||+++.++||||+++|.++++++++. .++|++|+++|.||+|++++| ++
T Consensus 223 -~~~d~~----------------~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~-~~~P~lI~v~T~kG~G~~~~~-~~ 283 (690)
T 3m49_A 223 -FSESVE----------------DRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD-EKRPTLIEVRTTIGFGSPNKS-GK 283 (690)
T ss_dssp -CCCCHH----------------HHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT-TS
T ss_pred -cchhHH----------------HHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc-CCCCEEEEEEeecccccCccc-Cc
Confidence 001222 34999999999766999999999999999862 479999999999999998765 45
Q ss_pred ccccccc-------------------cccCcccc-------------------------------------------ccC
Q 004227 442 DRMHGVV-------------------KFDPKTGK-------------------------------------------QFK 459 (767)
Q Consensus 442 ~~~Hg~~-------------------~fd~~~g~-------------------------------------------~~~ 459 (767)
.+|||.+ +|+..++. .++
T Consensus 284 ~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp 363 (690)
T 3m49_A 284 SASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLP 363 (690)
T ss_dssp GGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCc
Confidence 7899986 35543220 000
Q ss_pred -------C---CCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-----hhhhhh-CCCcEEeccccHHHHHHHH
Q 004227 460 -------T---KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKR-FPDRCFDVGIAEQHAVTFA 523 (767)
Q Consensus 460 -------~---~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-----~~f~~~-~P~R~~d~GIaE~~~vg~A 523 (767)
+ ..+...++++++++|.++++++|+++++++|++++++. ..|+++ +|+||||+||+||+|+++|
T Consensus 364 ~~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A 443 (690)
T 3m49_A 364 EGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAM 443 (690)
T ss_dssp TTGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHH
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHH
Confidence 0 11234788999999999999999999999999876654 467755 5899999999999999999
Q ss_pred HHHHhc-CCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHH
Q 004227 524 AGLASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEA 601 (767)
Q Consensus 524 aGlA~~-G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~ 601 (767)
+|||+. |+|||++||..|..++..|| +++|++++||+++++++|+ +|+||+|||+++|+++||++||++|++|+|++
T Consensus 444 ~GlA~~gG~~P~~~tf~~Fs~f~~~ai-r~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~ 522 (690)
T 3m49_A 444 NGIALHGGLKTYGGTFFVFSDYLRPAI-RLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGN 522 (690)
T ss_dssp HHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHH
T ss_pred HHHHHcCCCEEEEEecHHHHHHHHHHH-HHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHH
Confidence 999999 89999999866665555565 5689999999999999998 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCCcccccCCCCCCCCcccCceeEeecCC----cEEEEEechhHHHHHHHHHHHhcC
Q 004227 602 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD----RVAILGYGSIVQQCVLAANMLKSQ 677 (767)
Q Consensus 602 E~~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~----dvtIva~Gs~v~~al~Aa~~L~~~ 677 (767)
|++.++++|++..++|++||++|++.+..........+.++.|+ +++++|+ |++||++|++++.|++|+++|+++
T Consensus 523 E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~L~~~ 601 (690)
T 3m49_A 523 ESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLAVEAQKALAVD 601 (690)
T ss_dssp HHHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHHHHhc
Confidence 99999999998657999999999874321100000012455666 7899985 999999999999999999999999
Q ss_pred CCcEEEEEcccCCCCcH---HHHHHHh-ccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 678 DISVTVADARFCKPLDT---DLIRQLA-NEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 678 GI~v~VIdl~slkPlD~---e~i~~~~-~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
||+++|||++|++|||. +.+.+++ ++++++|+||++...||. +++.+.+ ..+|+ |+|+++.
T Consensus 602 GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~----~~~~~~~--------~~igi-d~Fg~sg 666 (690)
T 3m49_A 602 GVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWH----RYVGLEG--------DVLGI-DTFGASA 666 (690)
T ss_dssp TCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTH----HHHTTTC--------EEECC-CSCCCSS
T ss_pred CCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHH----HHhccCC--------CEEcc-CcCcCcC
Confidence 99999999999999985 4556666 467889999999977764 4554433 35788 9998765
No 7
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.4e-91 Score=826.58 Aligned_cols=527 Identities=23% Similarity=0.332 Sum_probs=449.1
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHh---hcC------CCCcEEEeCCCChH---H
Q 004227 149 PIHMKNLSTEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFN------TPDDKIIWDVGHQA---Y 215 (767)
Q Consensus 149 p~~~k~~~~~~L~~la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~---~~~------~p~Dr~i~s~GH~~---y 215 (767)
|.+.|+|+.++|+++|++||+++++|+++ ++||+|++||++|++++||. .|+ .++||||||+||++ |
T Consensus 5 ~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lY 84 (675)
T 1itz_A 5 TLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 84 (675)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHH
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHHH
Confidence 56789999999999999999999999986 89999999999999999983 454 25899999999999 9
Q ss_pred HHHHHhCCh----HHhHHHHhcCCC-CCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcC----------CCCeEEE
Q 004227 216 VHKILTGRR----SRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVIS 280 (767)
Q Consensus 216 ~~~~l~G~~----~~l~tlr~~ggl-~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g----------~~~~Vv~ 280 (767)
+|++++|++ ++|.+|||.|++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ ++++|||
T Consensus 85 a~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~ 164 (675)
T 1itz_A 85 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYV 164 (675)
T ss_dssp HHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEE
T ss_pred HHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEE
Confidence 999999995 889999999985 8999998899999999999999999999999999876 7899999
Q ss_pred EEcCCcccCcchHHHHHHHHHcC-CCEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhh
Q 004227 281 VIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITK 358 (767)
Q Consensus 281 viGDGal~eG~~~EAln~A~~~~-~nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~ 358 (767)
++|||+++||++|||+++|++++ .|+|+|+|||++ ++.++... +
T Consensus 165 i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~---------~------------------------- 210 (675)
T 1itz_A 165 ILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIA---------F------------------------- 210 (675)
T ss_dssp EECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT---------C-------------------------
T ss_pred EECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhh---------c-------------------------
Confidence 99999999999999999999999 589999999985 32222110 0
Q ss_pred hcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCC-CHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChh
Q 004227 359 QIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGH-NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (767)
Q Consensus 359 ~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh-di~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~a 437 (767)
.+++ ..+|++|||++++++||| |+++|.++++++++. .++|++|+++|.||+|++++
T Consensus 211 -----~~d~----------------~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~ 268 (675)
T 1itz_A 211 -----TEDV----------------STRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNK 268 (675)
T ss_dssp -----CSCH----------------HHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTT
T ss_pred -----ChhH----------------HHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCcccc
Confidence 0122 234999999998889999 999999999999863 47999999999999999988
Q ss_pred hhccccccccc------------------cccCcccc------------------------------c------------
Q 004227 438 EAAADRMHGVV------------------KFDPKTGK------------------------------Q------------ 457 (767)
Q Consensus 438 e~~~~~~Hg~~------------------~fd~~~g~------------------------------~------------ 457 (767)
++ +.+|||.+ +|+..++. .
T Consensus 269 ~~-~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 347 (675)
T 1itz_A 269 AN-SYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGE 347 (675)
T ss_dssp TT-SGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC
T ss_pred cC-cccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhccc
Confidence 64 47899973 45542210 0
Q ss_pred cC-----------CCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-----hhhhh-hCCCcEEeccccHHHHH
Q 004227 458 FK-----------TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQK-RFPDRCFDVGIAEQHAV 520 (767)
Q Consensus 458 ~~-----------~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-----~~f~~-~~P~R~~d~GIaE~~~v 520 (767)
.+ .+.+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+||+|+
T Consensus 348 ~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v 427 (675)
T 1itz_A 348 LPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMG 427 (675)
T ss_dssp CCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHH
T ss_pred CCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecccHHHHH
Confidence 00 122456789999999999999999999999999876654 34887 99999999999999999
Q ss_pred HHHHHHHhcC--CeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEec
Q 004227 521 TFAAGLASEG--VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAP 597 (767)
Q Consensus 521 g~AaGlA~~G--~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~P 597 (767)
++|+|+|++| +|||+++|++|+.++++|| +++|++++||++++++.|. +|+||+|||+++|+++||++||++|++|
T Consensus 428 ~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~P 506 (675)
T 1itz_A 428 AICNGIALHSPGFVPYCATFFVFTDYMRGAM-RISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRP 506 (675)
T ss_dssp HHHHHHHTTCTTCEEEEEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECC
T ss_pred HHHHHHHhcCCCCEEEEEEHHHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEEC
Confidence 9999999999 9999999999999999997 4589999999999977665 6899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCEEEEecCCCCcccccCCCCCCC-CcccCceeEeec---C--CcEEEEEechhHHHHHHHH
Q 004227 598 SDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGT-PLEIGKGRILME---G--DRVAILGYGSIVQQCVLAA 671 (767)
Q Consensus 598 sd~~E~~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~-~~~igk~~vl~e---G--~dvtIva~Gs~v~~al~Aa 671 (767)
+|++|++.++++|++..++|++||++|++.+. ++. ..+ .+++| ++++++ | .|++||++|+++++|++|+
T Consensus 507 ad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~--~~~--~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa 581 (675)
T 1itz_A 507 ADGNETAGAYKVAVLNRKRPSILALSRQKLPH--LPG--TSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAA 581 (675)
T ss_dssp CSHHHHHHHHHHHHHCTTSCEEEEECSSCBCC--CTT--CCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CCC--ccccccccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHH
Confidence 99999999999999855899999999987532 222 112 36677 688988 7 8999999999999999999
Q ss_pred HHHhcCCCcEEEEEcccCCCCcHHH---HHHHhccC-CEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcc
Q 004227 672 NMLKSQDISVTVADARFCKPLDTDL---IRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKL 747 (767)
Q Consensus 672 ~~L~~~GI~v~VIdl~slkPlD~e~---i~~~~~~~-~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f 747 (767)
++|+++||+++|||++|++|||++. +.++++++ +++||+|++..+||++.+ . .+.+++|+ |.|
T Consensus 582 ~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~~----~--------~~~~~ig~-d~f 648 (675)
T 1itz_A 582 DELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYV----G--------AQGKAIGI-DKF 648 (675)
T ss_dssp HHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHH----C--------SSCEEECC-CSC
T ss_pred HHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHhc----C--------CCceEEEe-CCC
Confidence 9999999999999999999999874 77777775 789999999989998643 1 12467999 899
Q ss_pred cccc
Q 004227 748 ETDC 751 (767)
Q Consensus 748 ~~~~ 751 (767)
+++.
T Consensus 649 g~sg 652 (675)
T 1itz_A 649 GASA 652 (675)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8764
No 8
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=5e-92 Score=826.03 Aligned_cols=525 Identities=20% Similarity=0.297 Sum_probs=435.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHh---hcCC------CCcEEEeCCCChH---HHHHHHhC
Q 004227 156 STEDLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFNT------PDDKIIWDVGHQA---YVHKILTG 222 (767)
Q Consensus 156 ~~~~L~~la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~---~~~~------p~Dr~i~s~GH~~---y~~~~l~G 222 (767)
++..++++|++||+++++|+++ ++||+|++||++|++++||. .|+. ++||||||+||++ |++++|+|
T Consensus 2 ~~~~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 81 (663)
T 3kom_A 2 SLSIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTG 81 (663)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhC
Confidence 3444688999999999999986 89999999999999999963 4442 5899999999999 99999999
Q ss_pred Ch---HHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCccc
Q 004227 223 RR---SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMT 288 (767)
Q Consensus 223 ~~---~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~----------~~~Vv~viGDGal~ 288 (767)
++ ++|.+|||.|+ ++|||++...++..+++|++|+++|+|+|||+|.++++. +++|||++|||+++
T Consensus 82 ~~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~ 161 (663)
T 3kom_A 82 YDLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLM 161 (663)
T ss_dssp CSCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHH
T ss_pred CCCCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhh
Confidence 94 88999999998 579999888889999999999999999999999998764 79999999999999
Q ss_pred CcchHHHHHHHHHcCC-CEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHH
Q 004227 289 AGQAYEAMNNAGFLDA-NLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEV 367 (767)
Q Consensus 289 eG~~~EAln~A~~~~~-nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~ 367 (767)
||++|||+++|+++++ |+|+|+|||++ ++ +++.. .. ..+++
T Consensus 162 eG~~~Eal~~A~~~~L~~livi~dnN~~-~i-----~~~~~---~~-----------------------------~~~d~ 203 (663)
T 3kom_A 162 EGVSHEACSLAGTLGLNKLVAFWDDNNI-SI-----DGDTK---GW-----------------------------FSDNT 203 (663)
T ss_dssp SHHHHHHHHHHHHHTCTTEEEEEEECC-----------CGG---GT-----------------------------CCCCH
T ss_pred hchHHHHHHHHHHhCCCeEEEEEECCCc-cc-----ccchh---hh-----------------------------cchhH
Confidence 9999999999999995 59999999995 32 11111 00 00122
Q ss_pred HHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhcccccccc
Q 004227 368 AAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGV 447 (767)
Q Consensus 368 ~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~ 447 (767)
. .+|++|||++++++||||+++|.++++++++. .++|++|+++|.||+|++++|+. .+|||.
T Consensus 204 ~----------------~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~e~~-~~~Hg~ 265 (663)
T 3kom_A 204 P----------------ERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFGSPEKAGT-ASVHGS 265 (663)
T ss_dssp H----------------HHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTTCTTTTTC-SSTTSS
T ss_pred H----------------HHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccccCCCCCC-ccccCC
Confidence 2 34999999998889999999999999999863 37999999999999999998754 689987
Q ss_pred c------------------cccCccc-----------cc----------------------------cCC----------
Q 004227 448 V------------------KFDPKTG-----------KQ----------------------------FKT---------- 460 (767)
Q Consensus 448 ~------------------~fd~~~g-----------~~----------------------------~~~---------- 460 (767)
+ +|+..++ +. .+.
T Consensus 266 ~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~ 345 (663)
T 3kom_A 266 PLSDQERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDYI 345 (663)
T ss_dssp CCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhhh
Confidence 4 3543221 00 000
Q ss_pred -----CCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-----hhhh-hhCCCcEEeccccHHHHHHHHHHHHhc
Q 004227 461 -----KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQ-KRFPDRCFDVGIAEQHAVTFAAGLASE 529 (767)
Q Consensus 461 -----~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-----~~f~-~~~P~R~~d~GIaE~~~vg~AaGlA~~ 529 (767)
+.+..+++++++++|.++++++|+++++++|++++++. ..|+ ++||+||||+||+||+|+++|+|||+.
T Consensus 346 ~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~~ 425 (663)
T 3kom_A 346 ASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSLY 425 (663)
T ss_dssp HHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHHc
Confidence 12335688999999999999999999999999877654 2574 899999999999999999999999999
Q ss_pred -CCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHH
Q 004227 530 -GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMV 607 (767)
Q Consensus 530 -G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l 607 (767)
|+|||+++|++|++++++|| +++|++++||++++++.|. +|+||+|||+++|+++||++||++|++|+|++|++.++
T Consensus 426 gG~~P~~~tf~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l 504 (663)
T 3kom_A 426 GGIKPYGGTFLVFSDYSRNAI-RMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIAW 504 (663)
T ss_dssp SSCEEEEEEEGGGHHHHHHHH-HHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHHH
T ss_pred CCCEEEEEehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHH
Confidence 99999999999999999998 5689999999999877665 79999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCEEEEecCCCCcccccCCCCC-CCCcccCceeEeec--CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEE
Q 004227 608 ATAAVIDDRPSCFRFPRGNGIGAVLPPNNK-GTPLEIGKGRILME--GDRVAILGYGSIVQQCVLAANMLKSQDISVTVA 684 (767)
Q Consensus 608 ~~A~~~~~~P~~irl~r~~~~~~~~p~~~~-~~~~~igk~~vl~e--G~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VI 684 (767)
++|++.+++|++||++|++.+. ++.... ...++.| ++++++ |.|++||++|+++++|++|+++|+++||+++||
T Consensus 505 ~~A~~~~~~Pv~ir~~r~~~p~--~~~~~~~~~~~~~G-~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi 581 (663)
T 3kom_A 505 KEAVKSKDTPSVMVLTRQNLMP--VVQTQHQVANIARG-GYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNVA 581 (663)
T ss_dssp HHHHHCSSCCEEEECCSSEECC--CCCCHHHHHHHTTT-CEEEECCTTCSCEEEECTTHHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHhCCCCEEEEccCccCCC--cCccccchhcccCc-eEEEEecCCCCEEEEEecHHHHHHHHHHHHHHhcCCCeEEE
Confidence 9999867899999999986432 111000 0123444 478888 789999999999999999999999999999999
Q ss_pred EcccCCCCcHHH---HHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 685 DARFCKPLDTDL---IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 685 dl~slkPlD~e~---i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
|++|++|||.+. +++++++...+|++|++.+.||.+.+. |. .-+.+|+ |.|..+..
T Consensus 582 ~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~~g~~~~~g------G~-----~~~~igi-d~Fg~sg~ 640 (663)
T 3kom_A 582 SIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQPDMWYKYMP------KA-----GGEVKGI-YSFGESAP 640 (663)
T ss_dssp ECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCGGGGGGCC------TT-----CEEEECC-CSCCCSSC
T ss_pred EcCcCCcccccHHHHHHHhcCCCCeEEEEecCCcccHHHHhc------cc-----CCcEEEe-cCCcCCCC
Confidence 999999999976 445666666899999998888876441 22 2367999 99988653
No 9
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=1.2e-91 Score=826.07 Aligned_cols=517 Identities=22% Similarity=0.320 Sum_probs=418.0
Q ss_pred HHHHHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHh---hcCC------CCcEEEeCCCChH---HHHHHHhCCh--
Q 004227 160 LEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFNT------PDDKIIWDVGHQA---YVHKILTGRR-- 224 (767)
Q Consensus 160 L~~la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~---~~~~------p~Dr~i~s~GH~~---y~~~~l~G~~-- 224 (767)
.+++|++||+++++|+++ ++||+|++||++||+++||. .|+. ++||||||+||++ |++++|+|++
T Consensus 45 ~~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~ 124 (711)
T 3uk1_A 45 TTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCC
Confidence 467999999999999986 89999999999999999964 4442 4899999999999 9999999994
Q ss_pred -HHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCC----------CCeEEEEEcCCcccCcch
Q 004227 225 -SRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGK----------NNNVISVIGDGAMTAGQA 292 (767)
Q Consensus 225 -~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~----------~~~Vv~viGDGal~eG~~ 292 (767)
++|.+|||.|+ ++|||+....++..+.+|++|+++|+|+|+|+|.++++. +++|||++|||+++||++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 88999999998 589998877788889999999999999999999998764 789999999999999999
Q ss_pred HHHHHHHHHcCCC-EEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHH
Q 004227 293 YEAMNNAGFLDAN-LIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (767)
Q Consensus 293 ~EAln~A~~~~~n-li~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k 370 (767)
|||+++|+++++| +|+|+|||++ ++.++..+. .+++.
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~---------------------------------------~~d~~-- 243 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF---------------------------------------HDDTP-- 243 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC---------------------------------------CCCHH--
T ss_pred HHHHHHHHHhCCCcEEEEEECCCcccccchhhhc---------------------------------------CCCHH--
Confidence 9999999999965 9999999995 222221100 01222
Q ss_pred HHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc--
Q 004227 371 VDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV-- 448 (767)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~-- 448 (767)
.+|++|||+++.++||||+++|.++++++++ .++|++|+++|.||+|++++| +..+|||.+
T Consensus 244 --------------~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG~G~~~~e-~~~~~Hg~~l~ 306 (711)
T 3uk1_A 244 --------------KRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIGNGAATKA-GGHDVHGAPLG 306 (711)
T ss_dssp --------------HHHHHTTCEEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC---------------------C
T ss_pred --------------HHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccccCCCCCC-CcccccCCCCC
Confidence 3499999999976999999999999999987 589999999999999998766 457899974
Q ss_pred ----------------cccCcc-----------ccc------------------------------cCC-----------
Q 004227 449 ----------------KFDPKT-----------GKQ------------------------------FKT----------- 460 (767)
Q Consensus 449 ----------------~fd~~~-----------g~~------------------------------~~~----------- 460 (767)
+|+..+ |+. .+.
T Consensus 307 ~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~ 386 (711)
T 3uk1_A 307 ADEIAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVA 386 (711)
T ss_dssp HHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhh
Confidence 354322 110 010
Q ss_pred ----CCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-----hhhhhh---CC---CcEEeccccHHHHHHHHHH
Q 004227 461 ----KSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKR---FP---DRCFDVGIAEQHAVTFAAG 525 (767)
Q Consensus 461 ----~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-----~~f~~~---~P---~R~~d~GIaE~~~vg~AaG 525 (767)
+.+..+++++++++|.++++++|+++++++|++++++. ..|+++ || +||||+||+||+|+++|+|
T Consensus 387 ~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaG 466 (711)
T 3uk1_A 387 GANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAING 466 (711)
T ss_dssp HHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHH
T ss_pred hhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHH
Confidence 01234678889999999999999999999999876543 478888 99 9999999999999999999
Q ss_pred HHhc-CCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHH
Q 004227 526 LASE-GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAEL 603 (767)
Q Consensus 526 lA~~-G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~ 603 (767)
||+. |++||+++|++|++|+++||+ ++|++++||++++++.|+ +|+||+|||+++|+++||++||++|++|+|++|+
T Consensus 467 lA~~~G~~Pv~~~f~~F~~~~~~~ir-~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~ 545 (711)
T 3uk1_A 467 LVLHGGYKPFGGTFLTFSDYSRNALR-VAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVET 545 (711)
T ss_dssp HHHHSSCEEEEEEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred HHHcCCCEEEEEEhHHHHHHHHHHHH-HhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHH
Confidence 9995 999999999999999999985 579999999999987776 7999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCEEEEecCCCCcccccCCCCC-CCCcccCceeEeec--C----CcEEEEEechhHHHHHHHHHHHhc
Q 004227 604 MHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNK-GTPLEIGKGRILME--G----DRVAILGYGSIVQQCVLAANMLKS 676 (767)
Q Consensus 604 ~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~-~~~~~igk~~vl~e--G----~dvtIva~Gs~v~~al~Aa~~L~~ 676 (767)
+.++++|++ .++|++||++|++.+. ++.... .+.++.|+ +++++ | .|++||++|+++++|++|+++|++
T Consensus 546 ~~~l~~Ai~-~~~Pv~ir~~r~~~p~--~~~~~~~~~~i~~G~-~vl~~~~G~~~~~dvtiia~G~~v~~al~Aa~~L~~ 621 (711)
T 3uk1_A 546 AVAWTYAVA-HQHPSCLIFSRQNLAF--NARTDAQLANVEKGG-YVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQ 621 (711)
T ss_dssp HHHHHHHHH-SSSCEEEECCSSEECC--CCCCHHHHHHGGGSS-EEEECCCSSCCSEEEEEEECTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCEEEEeeCCCCCC--CCCccccccccCCCe-EEEEecCCCCCCCCEEEEEecHHHHHHHHHHHHHHH
Confidence 999999998 7899999999986432 111000 02455665 57775 7 799999999999999999999999
Q ss_pred CCCcEEEEEcccCCCCcHHH---HHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 677 QDISVTVADARFCKPLDTDL---IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 677 ~GI~v~VIdl~slkPlD~e~---i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
+||+++|||++|++|||++. +++++++...+|++|++..+||++++ .. +.+++|+ |+|..+..
T Consensus 622 ~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~~g~~~~~----g~--------~~~~iGi-d~Fg~sg~ 687 (711)
T 3uk1_A 622 QGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYV----GL--------EGGVVGI-DTFGESAP 687 (711)
T ss_dssp TTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCSGGGHHHH----TT--------TSEEECC-CSCCCSSC
T ss_pred cCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCccccHHHHh----CC--------CceEEEe-CCCcCcCC
Confidence 99999999999999999875 34455555569999999988998655 21 1357999 89987653
No 10
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=6.3e-90 Score=810.09 Aligned_cols=511 Identities=21% Similarity=0.296 Sum_probs=437.7
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHh---hcC------CCCcEEEeCCCChH---HHHHHHhCC---h
Q 004227 161 EQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFN------TPDDKIIWDVGHQA---YVHKILTGR---R 224 (767)
Q Consensus 161 ~~la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~---~~~------~p~Dr~i~s~GH~~---y~~~~l~G~---~ 224 (767)
+++|++||+++++|+++ ++||+|++||++|++++||. .|+ .++||||||+||++ |+|++++|+ +
T Consensus 9 ~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~ 88 (651)
T 2e6k_A 9 TLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPL 88 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCH
Confidence 35899999999999986 99999999999999999984 454 25799999999999 999999999 7
Q ss_pred HHhHHHHhcCCC-CCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCcccCcchH
Q 004227 225 SRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQAY 293 (767)
Q Consensus 225 ~~l~tlr~~ggl-~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g----------~~~~Vv~viGDGal~eG~~~ 293 (767)
++|.+|||.+++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||+++||++|
T Consensus 89 ~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~ 168 (651)
T 2e6k_A 89 EELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSG 168 (651)
T ss_dssp HHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHH
T ss_pred HHHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHH
Confidence 899999999985 8999988899999999999999999999999999876 68999999999999999999
Q ss_pred HHHHHHHHcCC-CEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHH
Q 004227 294 EAMNNAGFLDA-NLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKV 371 (767)
Q Consensus 294 EAln~A~~~~~-nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~ 371 (767)
||+|+|+++++ |+++|+|||++ ++.++.... .+++
T Consensus 169 Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~---------------------------------------~~d~---- 205 (651)
T 2e6k_A 169 EAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF---------------------------------------TEDV---- 205 (651)
T ss_dssp HHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC---------------------------------------CSCH----
T ss_pred HHHHHHHHcCCCeEEEEEECCCccccccccccc---------------------------------------CccH----
Confidence 99999999995 59999999995 322221100 0122
Q ss_pred HHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc---
Q 004227 372 DEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV--- 448 (767)
Q Consensus 372 ~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~--- 448 (767)
..+|++|||++++.+||||+++|.++++++++ .++|++|+++|.||+|++ . +++.+||+.+
T Consensus 206 ------------~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~kg~G~~-~-~~~~~~H~~~~~~ 269 (651)
T 2e6k_A 206 ------------LARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHIGFGSP-K-QDSAKAHGEPLGP 269 (651)
T ss_dssp ------------HHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCTTTTST-T-TTSGGGTSSCCHH
T ss_pred ------------HHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEeccccc-c-cccccccccCCCH
Confidence 23499999999878999999999999999987 579999999999999999 4 4557899875
Q ss_pred ---------------cccCcccc-----------------------------------------ccCC-------CCcch
Q 004227 449 ---------------KFDPKTGK-----------------------------------------QFKT-------KSPTL 465 (767)
Q Consensus 449 ---------------~fd~~~g~-----------------------------------------~~~~-------~~~~~ 465 (767)
+|+..++. ..+. ..+..
T Consensus 270 ~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 349 (651)
T 2e6k_A 270 EAVEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPI 349 (651)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCB
T ss_pred HHHHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccH
Confidence 45443210 0000 01246
Q ss_pred hHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-----hhhhh-hCCCcEEeccccHHHHHHHHHHHHhcC-CeeEEeec
Q 004227 466 TYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQK-RFPDRCFDVGIAEQHAVTFAAGLASEG-VKPFCAIY 538 (767)
Q Consensus 466 s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-----~~f~~-~~P~R~~d~GIaE~~~vg~AaGlA~~G-~rP~~~ty 538 (767)
+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+||+|+++|+|+|++| +|||++||
T Consensus 350 ~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~ 429 (651)
T 2e6k_A 350 ATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTF 429 (651)
T ss_dssp CHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeH
Confidence 789999999999999999999999999877654 45887 999999999999999999999999998 99999999
Q ss_pred hhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCC
Q 004227 539 SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP 617 (767)
Q Consensus 539 s~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P 617 (767)
+.|+.++++|| ++++++++||++++++.|. +|+||+|||+++|++++|++||++|++|+|++|++.++++|++..++|
T Consensus 430 ~~F~~~~~~ai-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~P 508 (651)
T 2e6k_A 430 LVFSDYMRPAI-RLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGP 508 (651)
T ss_dssp GGGGGGSHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCC
Confidence 99999999996 5689999999999877766 789999999999999999999999999999999999999999865799
Q ss_pred EEEEecCCCCcccccCCCCCCCCcccCceeEeecC--CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHH
Q 004227 618 SCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG--DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTD 695 (767)
Q Consensus 618 ~~irl~r~~~~~~~~p~~~~~~~~~igk~~vl~eG--~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e 695 (767)
++||++|++.+. ++.. ....++.| ++++++| .|++||++|+++++|++|+++|+++||+++|||++|++|||.+
T Consensus 509 v~i~~~r~~~~~--~~~~-~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~ 584 (651)
T 2e6k_A 509 TALVLTRQAVPL--LSPE-KARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQ 584 (651)
T ss_dssp EEEECCSSCBCC--CCHH-HHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTS
T ss_pred EEEEEeCCCCCC--CCcc-hhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCcCCccccc
Confidence 999999987432 2210 01134556 5889988 8999999999999999999999999999999999999999998
Q ss_pred ---HHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 696 ---LIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 696 ---~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
.+++++++++++||+|++..+||++++ + +++|+ |.|+++.
T Consensus 585 ~~~~~~~v~~~~~~vv~vE~~~~~G~~~~v--------------~-~~ig~-d~f~~sg 627 (651)
T 2e6k_A 585 PEAYRKEVLPPGLPVVAVEAGASLGWERYA--------------H-KVVAL-DRFGASA 627 (651)
T ss_dssp CHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------S-EEECC-CSCCCSC
T ss_pred cHHHHHHHhCcCCeEEEEeCCccCchHHhC--------------C-CEEEe-CCCCCCC
Confidence 477788877789999999989988644 2 77999 9998654
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=2.4e-89 Score=807.36 Aligned_cols=518 Identities=20% Similarity=0.312 Sum_probs=439.0
Q ss_pred HHHHHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHH-h--hcCC------CCcEEEeCCCChH---HHHHHHhCC---
Q 004227 160 LEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALH-R--VFNT------PDDKIIWDVGHQA---YVHKILTGR--- 223 (767)
Q Consensus 160 L~~la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~-~--~~~~------p~Dr~i~s~GH~~---y~~~~l~G~--- 223 (767)
|+++|++||+++++|+++ ++||+|++||++|++++|| + .|+. ++||||||+||++ |+|++|+|+
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 788999999999999986 8999999999999999998 4 3442 4899999999999 999999999
Q ss_pred hHHhHHHHhcCCC-CCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCcccCcch
Q 004227 224 RSRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQA 292 (767)
Q Consensus 224 ~~~l~tlr~~ggl-~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g----------~~~~Vv~viGDGal~eG~~ 292 (767)
.++|.+|||.|++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||+++||++
T Consensus 84 ~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~ 163 (669)
T 2r8o_A 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (669)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHH
Confidence 7999999999995 8999988889999999999999999999999998765 4889999999999999999
Q ss_pred HHHHHHHHHcCC-CEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHH
Q 004227 293 YEAMNNAGFLDA-NLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAK 370 (767)
Q Consensus 293 ~EAln~A~~~~~-nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k 370 (767)
|||+++|+.+++ |+|+|+|||++ ++.++... . .+++.
T Consensus 164 ~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~---------~------------------------------~~d~~-- 202 (669)
T 2r8o_A 164 HEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGW---------F------------------------------TDDTA-- 202 (669)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT---------C------------------------------CCCHH--
T ss_pred HHHHHHHHHcCCCcEEEEEECCCcEeccccccc---------c------------------------------CccHH--
Confidence 999999999995 59999999995 32222110 0 01222
Q ss_pred HHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhcccccccc---
Q 004227 371 VDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGV--- 447 (767)
Q Consensus 371 ~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~--- 447 (767)
.+|++|||++++++||||+++|.++++++++. .++|++|+++|.||+|++++++ ..+||+.
T Consensus 203 --------------~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~-~~~~H~~~~~ 266 (669)
T 2r8o_A 203 --------------MRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAG-THDSHGAPLG 266 (669)
T ss_dssp --------------HHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT-SGGGTSSCCC
T ss_pred --------------HHHHHCCCeEEeEECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEeccCcCCcCC-CCcccCCCCC
Confidence 34999999998789999999999999999863 4799999999999999998654 4688986
Q ss_pred ---------------ccccCccc-----------c------------------------------ccC------------
Q 004227 448 ---------------VKFDPKTG-----------K------------------------------QFK------------ 459 (767)
Q Consensus 448 ---------------~~fd~~~g-----------~------------------------------~~~------------ 459 (767)
.+|+..++ + .++
T Consensus 267 ~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~ 346 (669)
T 2r8o_A 267 DAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIA 346 (669)
T ss_dssp HHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhh
Confidence 23443221 0 011
Q ss_pred ---CCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-----hhhhhhCCCcEEeccccHHHHHHHHHHHHhc-C
Q 004227 460 ---TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-G 530 (767)
Q Consensus 460 ---~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-----~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~-G 530 (767)
...+..+++++++++|.++++++|+++++++|+++++++ ..|+++||+||||+||+||+|+++|+|+|+. |
T Consensus 347 ~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG 426 (669)
T 2r8o_A 347 KLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGG 426 (669)
T ss_dssp HHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSS
T ss_pred hhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCC
Confidence 112345788999999999999999999999999876654 3799999999999999999999999999999 8
Q ss_pred CeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHH
Q 004227 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (767)
Q Consensus 531 ~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~ 609 (767)
++||+++|++|+.++++||++ +|++++||++++++.|+ +|+||+|||+++|+++||++||++|++|+|++|++.++++
T Consensus 427 ~~P~~~tf~~F~~~~~~~ir~-~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~ 505 (669)
T 2r8o_A 427 FLPYTSTFLMFVEYARNAVRM-AALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKY 505 (669)
T ss_dssp CEEEEEEEGGGGGTTHHHHHH-HHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHH
T ss_pred CeEEEeehHHHHHHHHHHHHH-HHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHH
Confidence 999999999999999999865 79999999999987766 6899999999999999999999999999999999999999
Q ss_pred HHhhCCCCEEEEecCCCCcccccCCCCCC-CCcccCceeEeec--C-CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEE
Q 004227 610 AAVIDDRPSCFRFPRGNGIGAVLPPNNKG-TPLEIGKGRILME--G-DRVAILGYGSIVQQCVLAANMLKSQDISVTVAD 685 (767)
Q Consensus 610 A~~~~~~P~~irl~r~~~~~~~~p~~~~~-~~~~igk~~vl~e--G-~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VId 685 (767)
|++..++|++||++|++.+. ++..... ..+++| ++++++ | .|++||++|+++++|++|+++|+++||+++|||
T Consensus 506 a~~~~~~Pv~i~~~r~~~~~--~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~ 582 (669)
T 2r8o_A 506 GVERQDGPTALILSRQNLAQ--QERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVS 582 (669)
T ss_dssp HHHCSSSCEEEECCSSEECC--CCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHhCCCcEEEEeCCCCCCC--CCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99865899999999986432 2221000 125666 588888 8 899999999999999999999999999999999
Q ss_pred cccCCCCcHH---HHHHHhccC-CEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 686 ARFCKPLDTD---LIRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 686 l~slkPlD~e---~i~~~~~~~-~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
++|++|||++ .+.++++++ +++|++|++..+||++ ++.+++ +.+|+ |.|+.+.
T Consensus 583 ~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~----~~~~~~--------~~ig~-d~fg~sg 639 (669)
T 2r8o_A 583 MPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYK----YVGLNG--------AIVGM-TTFGESA 639 (669)
T ss_dssp CSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHH----HHTTSS--------EEEEE-CSCCCSS
T ss_pred eccCCccccchHHHHHHhccccCceEEEEeCCchhhHHH----HhcCCC--------eEEEc-CCCCCcC
Confidence 9999999988 477777774 7899999998889985 444442 45888 6888764
No 12
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=1e-88 Score=802.81 Aligned_cols=498 Identities=24% Similarity=0.317 Sum_probs=427.9
Q ss_pred HHHH-HHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHh--hcCC------CCcEEEeCCCChH---HHHHHHhCC--
Q 004227 159 DLEQ-LAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR--VFNT------PDDKIIWDVGHQA---YVHKILTGR-- 223 (767)
Q Consensus 159 ~L~~-la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~--~~~~------p~Dr~i~s~GH~~---y~~~~l~G~-- 223 (767)
+|++ +|++||.++++|+++ ++||+|++||++|++++||+ .||. ++||||||+||++ |+|++|+|+
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~ 85 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 6888 999999999999987 89999999999999999997 6653 4899999999999 999999999
Q ss_pred -hHHhHHHHhcCCC-CCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCcccCcc
Q 004227 224 -RSRMNTMRKTSGL-AGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQ 291 (767)
Q Consensus 224 -~~~l~tlr~~ggl-~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g----------~~~~Vv~viGDGal~eG~ 291 (767)
.++|.+|||.|++ +|||++ +++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||+++||+
T Consensus 86 ~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~ 164 (680)
T 1gpu_A 86 SIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGI 164 (680)
T ss_dssp CHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhh
Confidence 7899999999995 999998 889999999999999999999999999875 488999999999999999
Q ss_pred hHHHHHHHHHcCC-CEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHH
Q 004227 292 AYEAMNNAGFLDA-NLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAA 369 (767)
Q Consensus 292 ~~EAln~A~~~~~-nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~ 369 (767)
+|||+|+|+.+++ |+++|+|||++ ++.++... . .+++.
T Consensus 165 ~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~--~-------------------------------------~~d~~- 204 (680)
T 1gpu_A 165 SSEASSLAGHLKLGNLIAIYDDNKITIDGATSIS--F-------------------------------------DEDVA- 204 (680)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT--C-------------------------------------CCCHH-
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCceEecccccc--c-------------------------------------CccHH-
Confidence 9999999999995 59999999985 32222110 0 01222
Q ss_pred HHHHHHhhccCCChhhhHhhcCCeEeeccCCC-CHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc
Q 004227 370 KVDEYARGLISASGSTFFEELGLYYIGPVDGH-NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (767)
Q Consensus 370 k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGh-di~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (767)
.+|++|||++++.+||| |+++|.++++++++. .++|++|+++|.||+|++ .+ +..+||+..
T Consensus 205 ---------------~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~-~~-~~~~~H~~~ 266 (680)
T 1gpu_A 205 ---------------KRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGSL-HA-GSHSVHGAP 266 (680)
T ss_dssp ---------------HHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTST-TT-TSGGGSSSC
T ss_pred ---------------HHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecccccc-cC-CCCccCCCC
Confidence 34999999998789999 999999999999863 479999999999999999 44 446889875
Q ss_pred -------------------cccCcccc-------------------------------------------ccC-------
Q 004227 449 -------------------KFDPKTGK-------------------------------------------QFK------- 459 (767)
Q Consensus 449 -------------------~fd~~~g~-------------------------------------------~~~------- 459 (767)
+|+..++. .++
T Consensus 267 ~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~ 346 (680)
T 1gpu_A 267 LKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKL 346 (680)
T ss_dssp CCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGS
T ss_pred CCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhc
Confidence 45442210 000
Q ss_pred ----CCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-----hhhhh------hCCCcEEeccccHHHHHHHHH
Q 004227 460 ----TKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-----NYFQK------RFPDRCFDVGIAEQHAVTFAA 524 (767)
Q Consensus 460 ----~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-----~~f~~------~~P~R~~d~GIaE~~~vg~Aa 524 (767)
.+.+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+||+|+++|+
T Consensus 347 ~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~ 426 (680)
T 1gpu_A 347 PTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426 (680)
T ss_dssp CCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHH
T ss_pred hhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHH
Confidence 123456789999999999999999999999999876643 46888 999999999999999999999
Q ss_pred HHHhcC-Ce-eEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHH
Q 004227 525 GLASEG-VK-PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEA 601 (767)
Q Consensus 525 GlA~~G-~r-P~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~ 601 (767)
|||+.| ++ ||+++|++|+.++++||+ ++|++++||++++++.|. +|+||+|||+.+|+++||++||++|++|+|++
T Consensus 427 GlA~~Gg~~~P~~~~f~~F~~~~~~air-~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~ 505 (680)
T 1gpu_A 427 GISAFGANYKPYGGTFLNFVSYAAGAVR-LSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGN 505 (680)
T ss_dssp HHHHHCTTCEEEEEEEHHHHGGGHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHH
T ss_pred HHHhcCCCceEEEeehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHH
Confidence 999998 99 999999999999999985 589999999999977766 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCCcccccCCCCCCCC-cccCceeEeecC--CcEEEEEechhHHHHHHHHHHHhcCC
Q 004227 602 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTP-LEIGKGRILMEG--DRVAILGYGSIVQQCVLAANMLKSQD 678 (767)
Q Consensus 602 E~~~~l~~A~~~~~~P~~irl~r~~~~~~~~p~~~~~~~-~~igk~~vl~eG--~dvtIva~Gs~v~~al~Aa~~L~~~G 678 (767)
|++.++++|++..++|++||++|++.+. ++. ..+. +++| ++++++| .|++||++|+++++|++|+++|+++|
T Consensus 506 e~~~~l~~A~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-~~vl~~g~~~dvtiva~G~~v~~al~Aa~~L~~~G 580 (680)
T 1gpu_A 506 EVSAAYKNSLESKHTPSIIALSRQNLPQ--LEG--SSIESASKG-GYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKN 580 (680)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCSSCBCC--CTT--CCHHHHTTS-CEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCC--CCC--cchhhccCC-CEEEecCCCCCEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 9999999999855899999999987533 222 1122 5666 5899998 89999999999999999999999999
Q ss_pred CcEEEEEcccCCCCcHH---HHHHHhccC-CEEEEEcCCCCCCHHHHH
Q 004227 679 ISVTVADARFCKPLDTD---LIRQLANEH-EILITVEEGSVGGFGSHV 722 (767)
Q Consensus 679 I~v~VIdl~slkPlD~e---~i~~~~~~~-~~vVvvEe~~~GGlgs~I 722 (767)
|+++|||++|++|||.+ .++++++++ +. |+||++..+||+++|
T Consensus 581 i~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v 627 (680)
T 1gpu_A 581 IKARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYA 627 (680)
T ss_dssp CCEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTC
T ss_pred CCEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhc
Confidence 99999999999999998 466677765 66 999999989998644
No 13
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=6.4e-88 Score=794.79 Aligned_cols=512 Identities=20% Similarity=0.286 Sum_probs=436.2
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHh---hcC--C----CCcEEEeCCCChH---HHHHHHhCC--
Q 004227 159 DLEQLAAELRADIVNSVSK-TGGHLSANLGVVELTLALHR---VFN--T----PDDKIIWDVGHQA---YVHKILTGR-- 223 (767)
Q Consensus 159 ~L~~la~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~---~~~--~----p~Dr~i~s~GH~~---y~~~~l~G~-- 223 (767)
+|+++|++||+++++|+++ ++||+|++||++|++++||+ .++ + ++||||||+||++ |++++|+|+
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~ 84 (673)
T 1r9j_A 5 SIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNL 84 (673)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCC
Confidence 3788999999999999976 89999999999999999986 343 2 3799999999999 999999999
Q ss_pred -hHHhHHHHhcCC-CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcC----------CCCeEEEEEcCCcccCcc
Q 004227 224 -RSRMNTMRKTSG-LAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILG----------KNNNVISVIGDGAMTAGQ 291 (767)
Q Consensus 224 -~~~l~tlr~~gg-l~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g----------~~~~Vv~viGDGal~eG~ 291 (767)
.++|.+|||.|+ ++|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||+++||+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 588999999998 57999988889999999999999999999999999876 689999999999999999
Q ss_pred hHHHHHHHHHcCC-CEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHH
Q 004227 292 AYEAMNNAGFLDA-NLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAA 369 (767)
Q Consensus 292 ~~EAln~A~~~~~-nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~ 369 (767)
+|||+++|+++++ |+|+|+|||++ ++.++.... .+++.+
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~---------------------------------------~~d~~~ 205 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF---------------------------------------TEQCHQ 205 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC---------------------------------------CCCHHH
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc---------------------------------------CHhHHH
Confidence 9999999999995 59999999985 332222110 022333
Q ss_pred HHHHHHhhccCCChhhhHhhcCCeEeeccCC-CCHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc
Q 004227 370 KVDEYARGLISASGSTFFEELGLYYIGPVDG-HNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV 448 (767)
Q Consensus 370 k~~~~~r~~~~~~~~~lfea~G~~~i~~vDG-hdi~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~ 448 (767)
+|++|||+++..+|| ||+++|.++++++++. .++|++|+++|.||+|++ +| +..+||+.+
T Consensus 206 ----------------~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~-~~-~~~~~H~~~ 266 (673)
T 1r9j_A 206 ----------------KYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS-KQ-GTEKVHGAP 266 (673)
T ss_dssp ----------------HHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST-TT-TSGGGTSSC
T ss_pred ----------------HHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccc-cC-CCcccccCC
Confidence 399999999878999 9999999999998863 579999999999999999 44 457889863
Q ss_pred -------------------cccCcc------------cc------------------------------ccCCC------
Q 004227 449 -------------------KFDPKT------------GK------------------------------QFKTK------ 461 (767)
Q Consensus 449 -------------------~fd~~~------------g~------------------------------~~~~~------ 461 (767)
+|+..+ ++ ..+..
T Consensus 267 ~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p 346 (673)
T 1r9j_A 267 LGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLP 346 (673)
T ss_dssp CCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSC
T ss_pred CCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhcc
Confidence 222111 00 00000
Q ss_pred --CcchhHHHHHHHHHHHHHHhCCCEEEEeccccCCcChh-------hhhh-hCCCcEEeccccHHHHHHHHHHHHhc-C
Q 004227 462 --SPTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGLN-------YFQK-RFPDRCFDVGIAEQHAVTFAAGLASE-G 530 (767)
Q Consensus 462 --~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl~-------~f~~-~~P~R~~d~GIaE~~~vg~AaGlA~~-G 530 (767)
.+..+++++++++|.++++++|+++++++|+++++++. .|++ +||+||||+||+|++|+++|+|+|+. |
T Consensus 347 ~~~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG 426 (673)
T 1r9j_A 347 TNSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDG 426 (673)
T ss_dssp CCCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSS
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCC
Confidence 12457899999999999999999999999998766553 2887 99999999999999999999999999 5
Q ss_pred CeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHH
Q 004227 531 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (767)
Q Consensus 531 ~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~ 609 (767)
++||+++|++|+.++++||+ ++|++++||++++++.|. +|+||+|||+.+|++++|++||++|++|+|++|++.++++
T Consensus 427 ~~P~~~~~~~F~~~~~~~ir-~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~ 505 (673)
T 1r9j_A 427 IIPFGGTFLNFIGYALGAVR-LAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAV 505 (673)
T ss_dssp CEEEEEEEGGGGGGGHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHH
T ss_pred CEEEEEehHHHHHHHHHHHH-HHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHH
Confidence 99999999999999999975 489999999999977766 7999999999999999999999999999999999999999
Q ss_pred HHhhCCCCEEEEecCCCCcccccCCCCCCC-CcccCceeEeecC--CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEc
Q 004227 610 AAVIDDRPSCFRFPRGNGIGAVLPPNNKGT-PLEIGKGRILMEG--DRVAILGYGSIVQQCVLAANMLKSQDISVTVADA 686 (767)
Q Consensus 610 A~~~~~~P~~irl~r~~~~~~~~p~~~~~~-~~~igk~~vl~eG--~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl 686 (767)
|++..++|++||++|++.+. ++. ..+ .+++| ++++++| .|++||++|+++++|++|+++|+++ |+++|||+
T Consensus 506 a~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~-i~~~Vv~~ 579 (673)
T 1r9j_A 506 ALSSIHTPTVLCLSRQNTEP--QSG--SSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSM 579 (673)
T ss_dssp HHHCTTCCEEEECCSSEECC--CTT--CCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEEC
T ss_pred HHHhCCCeEEEEEcCCCCCC--CCC--cccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc-CCEEEEeC
Confidence 99865899999999986432 222 112 35677 6899998 8999999999999999999999999 99999999
Q ss_pred ccCCCCcHHH---HHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 687 RFCKPLDTDL---IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 687 ~slkPlD~e~---i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
+|++|||++. +.++++++.++|++|++..+||+++| .++ +|+ |.|.++.
T Consensus 580 ~sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~~g~~~~v--------------~~~-~g~-d~f~~sg 631 (673)
T 1r9j_A 580 PCQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWEKYS--------------HAH-VGM-SGFGASA 631 (673)
T ss_dssp SCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------SEE-ESC-SSCCCSS
T ss_pred CCCchhhcccHHHHHHHhccCCeEEEEeCCCccchHHhc--------------Cce-EEe-ccCCCCC
Confidence 9999999984 88899888889999999989988644 133 899 8888654
No 14
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=7.3e-87 Score=799.41 Aligned_cols=592 Identities=18% Similarity=0.227 Sum_probs=458.4
Q ss_pred CCccccCCCCcccCCCCCHHHHH-HHHHHHHHHHHHHhhc-c------CCCCCCcccHHHHHHHHHhh-cCC-----CCc
Q 004227 139 PTPLLDTINYPIHMKNLSTEDLE-QLAAELRADIVNSVSK-T------GGHLSANLGVVELTLALHRV-FNT-----PDD 204 (767)
Q Consensus 139 ~~~~l~~i~~p~~~k~~~~~~L~-~la~~iR~~i~~~v~~-~------gGH~gsslg~vel~~aL~~~-~~~-----p~D 204 (767)
.||||+||+.|.+.+.....+|+ ++|++||+++++||++ + |||+|+++|++||+++||++ |+. |+|
T Consensus 56 ~~~~l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D 135 (886)
T 2qtc_A 56 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 135 (886)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCchhhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 68999999888888888777999 8999999999999986 6 79999999999999999865 665 689
Q ss_pred EEEeCCCChH---HHHHHHhCCh--HHhHHHHh---cCCCCCCCCCCCCCC-CCCCCcccchhHHHHHHHHHHHHH----
Q 004227 205 KIIWDVGHQA---YVHKILTGRR--SRMNTMRK---TSGLAGFPKREESVH-DAFGAGHSSTSISAGLGMAVARDI---- 271 (767)
Q Consensus 205 r~i~s~GH~~---y~~~~l~G~~--~~l~tlr~---~ggl~G~p~~~es~~-~~~g~G~~G~~ls~A~G~AlA~kl---- 271 (767)
||||+||++ |+|++|+||. ++|.+||| .+|++|||++.++++ +.|++||+|+|+++|+|+|+|+|+
T Consensus 136 -~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~ 214 (886)
T 2qtc_A 136 -LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214 (886)
T ss_dssp -EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred -EEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhccc
Confidence 999999999 9999999995 88999999 568999999988887 999999999999999999999998
Q ss_pred ---cCCCCeEEEEEcCCcccCcchHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHH
Q 004227 272 ---LGKNNNVISVIGDGAMTAGQAYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFR 347 (767)
Q Consensus 272 ---~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~ 347 (767)
++.+++||||+|||+++||++|||+|+|+.++ .|||||+|||++ ++ ++++.....+...|.++..+..|+
T Consensus 215 ~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~-si-----~~~v~~~~~~~~~l~~~~~~~G~~ 288 (886)
T 2qtc_A 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQ-RL-----DGPVTGNGKIINELEGIFEGAGWN 288 (886)
T ss_dssp TSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSB-CS-----SSBSCTTSCHHHHHHHHHHHTTCE
T ss_pred ccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCc-cc-----CCCccccccccHHHHHHHHhCCCC
Confidence 78899999999999999999999999999998 589999999996 33 444443333556666655444443
Q ss_pred HHHHH----HHHHhhhc-CCchHHHHHHHHH------------HHhhcc-CCCh--hhhHh---hcCCeEeeccCCCCHH
Q 004227 348 KLREA----AKSITKQI-GGQTHEVAAKVDE------------YARGLI-SASG--STFFE---ELGLYYIGPVDGHNVE 404 (767)
Q Consensus 348 ~ir~~----~k~~~~~~-g~~~~~~~~k~~~------------~~r~~~-~~~~--~~lfe---a~G~~~i~~vDGhdi~ 404 (767)
.++.. .+.+.++. |..+.....++.+ ++|+.+ ..+. ..+.+ ..|++|+ ++||||++
T Consensus 289 ~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l-~~dGhD~~ 367 (886)
T 2qtc_A 289 VIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL-NRGGHDPK 367 (886)
T ss_dssp EEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTC-CBGGGCHH
T ss_pred EEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhc-ccCCCCHH
Confidence 33221 12222221 2222222222211 333322 1111 01122 2377888 89999999
Q ss_pred HHHHHHHHhHcCCCCCcEEEEEEecCCCCCChhhhccccccccc--------------------------cccCccc---
Q 004227 405 DLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVV--------------------------KFDPKTG--- 455 (767)
Q Consensus 405 ~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~--------------------------~fd~~~g--- 455 (767)
+|.++++++++. .++|++||++|+||+|++++++++.++|++. +|+..+.
T Consensus 368 ~l~~a~~~A~~~-~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~ 446 (886)
T 2qtc_A 368 KIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSE 446 (886)
T ss_dssp HHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSH
T ss_pred HHHHHHHHHHHc-CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchH
Confidence 999999999875 3699999999999999997777778999874 4543321
Q ss_pred -------------cccC------------C-----------CCcchhHHHHHHHHHHHHHHhC---CCEEEEecccc---
Q 004227 456 -------------KQFK------------T-----------KSPTLTYTQYFAESLIKEAETD---DKIVAIHAAMG--- 493 (767)
Q Consensus 456 -------------~~~~------------~-----------~~~~~s~~~af~~aL~~~~~~d---~~ivvi~aD~~--- 493 (767)
...+ + ..+..+++++|+++|.++++++ ++||++++|+.
T Consensus 447 ~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~ 526 (886)
T 2qtc_A 447 EHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTF 526 (886)
T ss_dssp HHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGG
T ss_pred HHHHHHHHHHHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCcccccc
Confidence 0011 0 1134578999999999999988 99999999943
Q ss_pred CC------cC-----hhhhh-----------hhCCCcEEeccccHHHH-H---HHHHHHHhcC--CeeEEeechhH-HHh
Q 004227 494 GG------TG-----LNYFQ-----------KRFPDRCFDVGIAEQHA-V---TFAAGLASEG--VKPFCAIYSSF-LQR 544 (767)
Q Consensus 494 gs------~g-----l~~f~-----------~~~P~R~~d~GIaE~~~-v---g~AaGlA~~G--~rP~~~tys~F-l~r 544 (767)
|+ ++ ...|. +.||+||||+||+|++| + ++|+|+|++| ++||+.+|++| +||
T Consensus 527 G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qR 606 (886)
T 2qtc_A 527 GMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQR 606 (886)
T ss_dssp TCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHH
T ss_pred CcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHH
Confidence 32 22 24453 78899999999999995 5 6999999999 89999999999 899
Q ss_pred HHHHHHHhhhcCCCCEEEEeecCCc-cCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCC----EE
Q 004227 545 GYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRP----SC 619 (767)
Q Consensus 545 a~dQi~~~~a~~~lpViiv~~~~Gl-~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P----~~ 619 (767)
++||+++++++++.++++.++.++. +|+||+|||+.+|+++++++||++|++|+|++|++.++++|++..++| ++
T Consensus 607 a~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~ 686 (886)
T 2qtc_A 607 IGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVY 686 (886)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCE
T ss_pred HHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEE
Confidence 9999999999999999998764433 689999999999999999999999999999999999999999865679 99
Q ss_pred EEecCCC--CcccccCCCCCCCCcccCceeEeecC----CcEEEEEechhHHHHHHHHHHHhcC-CCcEEEEEcccCCCC
Q 004227 620 FRFPRGN--GIGAVLPPNNKGTPLEIGKGRILMEG----DRVAILGYGSIVQQCVLAANMLKSQ-DISVTVADARFCKPL 692 (767)
Q Consensus 620 irl~r~~--~~~~~~p~~~~~~~~~igk~~vl~eG----~dvtIva~Gs~v~~al~Aa~~L~~~-GI~v~VIdl~slkPl 692 (767)
||++|++ .....+|.. ....+ +++++++++| .|++||++|+++++|++|+++|+++ ||+++|||++|++||
T Consensus 687 i~~~r~~~~~~~p~~~~~-~~~~~-~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pL 764 (886)
T 2qtc_A 687 YYITTLNENYHMPAMPEG-AEEGI-RKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTEL 764 (886)
T ss_dssp EEEECCSCCBCCCCCCTT-CHHHH-HHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHH
T ss_pred EEEeCCccccCCCCCCcc-hhhhc-cCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCccc
Confidence 9999865 211123321 01223 7889999987 7999999999999999999999998 999999999999999
Q ss_pred cHHH-------------------HHHHhccCCEEEEEcCCCCCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 693 DTDL-------------------IRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 693 D~e~-------------------i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
|.++ +++.+.. ..+|++|++.. |+++.+..++.. .+++.+|+ |.|+.+.
T Consensus 765 D~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~vVa~ed~~~-g~~~~~~~~~~~-------~~~~~lG~-D~Fg~sg 832 (886)
T 2qtc_A 765 ARDGQDCERWNMLHPLETPRVPYIAQVMND-APAVASTDYMK-LFAEQVRTYVPA-------DDYRVLGT-DGFGRSD 832 (886)
T ss_dssp HHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SCEEEECSSCT-HHHHTTGGGCCS-------SCEEEECC-CSCCCCC
T ss_pred chHHHHHhhhcccCccccccHHHHHHhcCC-CCEEEEEeccc-chHHHHHHHcCC-------CCeEEEEe-CCCCCCC
Confidence 9985 5555655 66888998877 677655444421 35788999 8898754
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=6.3e-65 Score=599.75 Aligned_cols=524 Identities=14% Similarity=0.158 Sum_probs=402.5
Q ss_pred HHHHHHHHHHHHHHHh--------------h-ccCCCCCCcccHHHHHHHHHhhc-CCCCcE-EEeCCCChH---HHHHH
Q 004227 160 LEQLAAELRADIVNSV--------------S-KTGGHLSANLGVVELTLALHRVF-NTPDDK-IIWDVGHQA---YVHKI 219 (767)
Q Consensus 160 L~~la~~iR~~i~~~v--------------~-~~gGH~gsslg~vel~~aL~~~~-~~p~Dr-~i~s~GH~~---y~~~~ 219 (767)
+.+.|+.|+.--++.- . +.+||+|+++|++++++.+..+. ...+|| ||+|+||.+ |+.++
T Consensus 48 ~~raanyl~~~~iyl~~n~ll~r~L~~d~vk~a~sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~GHg~p~lYa~l~ 127 (845)
T 3ahc_A 48 YWRVTNYMSIGQIYLRSNPLMKEPFTRDDVKHRLVGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTSQSY 127 (845)
T ss_dssp HHHHHHHHHHHHHHBSSCTTCCSSCCGGGBCSSCCSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccCcCCHHHhhhcCCCCCCCCHHHHHHHHHHHHhcccCCCceEEEECcCcHHHHHHHHHH
Confidence 3445566665555433 3 26899999999999955543332 245899 799999999 88889
Q ss_pred HhCC-----------hHHhHH-HHhcC---CCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcC
Q 004227 220 LTGR-----------RSRMNT-MRKTS---GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGD 284 (767)
Q Consensus 220 l~G~-----------~~~l~t-lr~~g---gl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGD 284 (767)
|.|. .++|.+ |||+. |++|||.+ +.++....+|.+|+||+.|+|||+ .+++.+|+|++||
T Consensus 128 l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~pgHp~~-~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GD 202 (845)
T 3ahc_A 128 VDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAP-ETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGD 202 (845)
T ss_dssp HHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSBCSSCCT-TSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEET
T ss_pred HcCCCccccccccccHHHHHHHHHhccCCCCCCCCCCC-CCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECC
Confidence 9997 356766 67764 58999976 678888899999999999999995 4679999999999
Q ss_pred CcccCcc---hHHHHHHHHHcC-CCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhc
Q 004227 285 GAMTAGQ---AYEAMNNAGFLD-ANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQI 360 (767)
Q Consensus 285 Gal~eG~---~~EAln~A~~~~-~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~ 360 (767)
||.++|+ .||+.++|...+ +||++|+|+|+. + ++|++. ...+
T Consensus 203 Ge~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~-~-----i~g~t~-l~~~--------------------------- 248 (845)
T 3ahc_A 203 GEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGY-K-----IANPTI-LARI--------------------------- 248 (845)
T ss_dssp TGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSB-S-----SSSBCH-HHHS---------------------------
T ss_pred CchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCC-c-----CCCCcc-cccc---------------------------
Confidence 9999999 999999998775 999999999994 2 144431 0000
Q ss_pred CCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCC-C--CHHHHHHHHHH---------------hHcCCCCCc-
Q 004227 361 GGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDG-H--NVEDLVTIFQR---------------VKEMPAPGP- 421 (767)
Q Consensus 361 g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDG-h--di~~l~~al~~---------------a~~~~~~~P- 421 (767)
+.+++.+| |++|||+++..||| | |+++|.+++.+ +++...++|
T Consensus 249 --~~e~l~~r----------------f~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~ 310 (845)
T 3ahc_A 249 --SDEELHDF----------------FRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPF 310 (845)
T ss_dssp --CHHHHHHH----------------HHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCC
T ss_pred --CcHHHHHH----------------HHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 13566666 99999998757899 9 99998877542 222123689
Q ss_pred -EEEEEEecCCC-------CCChhhhcccccccccc-------------------------ccC------------cccc
Q 004227 422 -VLIHVVTEKGK-------GYPPAEAAADRMHGVVK-------------------------FDP------------KTGK 456 (767)
Q Consensus 422 -~lI~v~T~KG~-------G~~~ae~~~~~~Hg~~~-------------------------fd~------------~~g~ 456 (767)
++|+++|.||+ |.+ +|+ ..+|||++. |+. ..+.
T Consensus 311 w~~Ii~rT~kG~tgp~~~~G~~-~eg-~~~~H~~pl~~~~~~~~~~~~l~~wl~~~~p~elF~~~~~~~~~~~~~~~~g~ 388 (845)
T 3ahc_A 311 YPMLIFRTPKGWTCPKFIDGKK-TEG-SWRAHQVPLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGE 388 (845)
T ss_dssp EEEEEEECCTTTTSCSEETTEE-CTT-SGGGSSCSCTTTTTCHHHHHHHHHHHHHTCGGGTBCTTSCBCHHHHTTSCCGG
T ss_pred CeEEEEECcccCCCCCCCCCcc-cCC-CccccCCCCCCcccCHHHHHHHhhhccCCCchhccCCchHHHHHHHHhCcchH
Confidence 99999999999 984 654 468998752 210 0000
Q ss_pred c------------cCC-----C--------------C-cchhHHHHHHHHHHHHHHhCCC-EEEEeccccCCcChhhhhh
Q 004227 457 Q------------FKT-----K--------------S-PTLTYTQYFAESLIKEAETDDK-IVAIHAAMGGGTGLNYFQK 503 (767)
Q Consensus 457 ~------------~~~-----~--------------~-~~~s~~~af~~aL~~~~~~d~~-ivvi~aD~~gs~gl~~f~~ 503 (767)
. ++. . . ....-+.+++++|.++++++|+ ++++++|+.+|+.+..|.+
T Consensus 389 ~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~~~~~g~~~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~ 468 (845)
T 3ahc_A 389 LRIGANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYE 468 (845)
T ss_dssp GSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHHHHCTTEEEECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGG
T ss_pred hHhhhCHHhcCCcCccccCCCChHhhhccccccccCCccchhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHh
Confidence 0 000 0 0 0113467889999999999999 9999999999999988777
Q ss_pred h---------C--C--------CcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHH---HhHHHH----HHHhhhcC-
Q 004227 504 R---------F--P--------DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFL---QRGYDQ----VVHDVDLQ- 556 (767)
Q Consensus 504 ~---------~--P--------~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl---~ra~dQ----i~~~~a~~- 556 (767)
. + | +|||+ ||+||+|+++|+|+|+.|.+||+.+|++|+ .|+++| |++.++++
T Consensus 469 ~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~ 547 (845)
T 3ahc_A 469 VTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIP 547 (845)
T ss_dssp TCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCT
T ss_pred hcccccccccccCCcccccCCCCcEee-eecHHHHHHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhh
Confidence 7 6 7 89999 999999999999999999999999998887 799999 87763443
Q ss_pred ---CC-CEEEEeecCCc-cCCCCCCCCC--hhHHHHhh---cCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEecCCC
Q 004227 557 ---KL-PVRFAMDRAGL-VGADGPTHCG--AFDVTFMS---CLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN 626 (767)
Q Consensus 557 ---~l-pViiv~~~~Gl-~G~dG~TH~~--~~Dla~lr---~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~r~~ 626 (767)
.+ +|++++++.|+ +|+||||||+ .+|+..++ .+||++|+.|+|++|+..+++.|++..+.|.+++++|++
T Consensus 548 wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~ 627 (845)
T 3ahc_A 548 WRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQP 627 (845)
T ss_dssp TSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSC
T ss_pred hcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Confidence 45 69999999998 7999999999 45555555 679999999999999999999999866666666669998
Q ss_pred CcccccCCCCCCCCcccCceeEe---ec--C--CcEEEEEechhH-HHHHHHHHHHhcCCCcEEEEEcccC---CCCcHH
Q 004227 627 GIGAVLPPNNKGTPLEIGKGRIL---ME--G--DRVAILGYGSIV-QQCVLAANMLKSQDISVTVADARFC---KPLDTD 695 (767)
Q Consensus 627 ~~~~~~p~~~~~~~~~igk~~vl---~e--G--~dvtIva~Gs~v-~~al~Aa~~L~~~GI~v~VIdl~sl---kPlD~e 695 (767)
.+... +.......+..|++.+. ++ | .||+||++|+++ .+|++|+++|+++||+++|||+.++ +|.|++
T Consensus 628 ~p~~~-~~~~a~~~~~~G~~v~~~as~d~~g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~ 706 (845)
T 3ahc_A 628 APTWV-TLDEARAELEAGAAEWKWASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENN 706 (845)
T ss_dssp EEECS-CHHHHHHHHHHSEEECTTTCCCSSTTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTC
T ss_pred CCccC-CchhhhhhhcCCeEEEEeecccccCCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCcccc
Confidence 54431 11000012455665555 35 5 799999999765 6699999999999999999999999 666655
Q ss_pred HHHHHhccCCEEEEEcCCC---CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccc
Q 004227 696 LIRQLANEHEILITVEEGS---VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLE 748 (767)
Q Consensus 696 ~i~~~~~~~~~vVvvEe~~---~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~ 748 (767)
.+....+..+.|+++|++. .||+++.|++.+.++. .+.++.++|++| |.
T Consensus 707 ~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV~ell~~r~---~~~~l~v~G~~d-~G 758 (845)
T 3ahc_A 707 DEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDRP---NHDNFHVVGYKE-QG 758 (845)
T ss_dssp TTSCCHHHHHHHHCSSSCEEEEESSCHHHHHHHTTTST---TGGGEEEECCCS-CC
T ss_pred ccccCHHHhCcEeecCCcceeeecCcHHHHHHHHHhCC---CCceEEEEeccC-CC
Confidence 4333344557788999986 4999999999998872 135799999999 65
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=2e-59 Score=563.91 Aligned_cols=538 Identities=14% Similarity=0.123 Sum_probs=385.2
Q ss_pred CCCHHHHHHHHH---HHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHhhcC-----CCCcEEEeCCCChHHHHHHH--hC
Q 004227 154 NLSTEDLEQLAA---ELRADIVNSVSK-TGGHLSANLGVVELTLALHRVFN-----TPDDKIIWDVGHQAYVHKIL--TG 222 (767)
Q Consensus 154 ~~~~~~L~~la~---~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~~~~-----~p~Dr~i~s~GH~~y~~~~l--~G 222 (767)
+++.+++.++-+ .+|..=-++..+ .+|-.-+..|+.-+.+++.+.++ .++|.++ ...|+.+.+.+. .|
T Consensus 194 ~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~-g~~hRg~~~~Lan~~G 272 (933)
T 2jgd_A 194 TFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVL-GMAHRGRLNVLVNVLG 272 (933)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEE-ECCSTTHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEe-cCCCcCHHHHHHHHhC
Confidence 466666554432 233332223332 23332235666555555544332 3567555 348999999888 77
Q ss_pred C--hHHhHHHHhc-CCCCC--CCC-C--CCC----CC------CCCCCcccchhHHHHHHHHHHHHHcC-----CCCeEE
Q 004227 223 R--RSRMNTMRKT-SGLAG--FPK-R--EES----VH------DAFGAGHSSTSISAGLGMAVARDILG-----KNNNVI 279 (767)
Q Consensus 223 ~--~~~l~tlr~~-ggl~G--~p~-~--~es----~~------~~~g~G~~G~~ls~A~G~AlA~kl~g-----~~~~Vv 279 (767)
. ++.|..|.-. .+.+| -.+ . ... .+ ..+..+|+|+++|+|+|+|+|+++++ .++++|
T Consensus 273 ~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv 352 (933)
T 2jgd_A 273 KKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPI 352 (933)
T ss_dssp CCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEE
T ss_pred CCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeEEE
Confidence 5 4556666322 11111 000 0 000 01 13667999999999999999999884 688999
Q ss_pred EEEcCCcc-cCcchHHHHHHHHHcCCC---EEEEEECCCCCcccc-ccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHH
Q 004227 280 SVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQVSLPT-ATLDGPATPVGALSSALSKLQASTNFRKLREAAK 354 (767)
Q Consensus 280 ~viGDGal-~eG~~~EAln~A~~~~~n---li~Iv~dN~~~S~pt-~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k 354 (767)
|++|||++ ++|++|||||+|+.+++| +|+||+||++ ++.| ...+...
T Consensus 353 ~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~-~ist~~~~~~~~--------------------------- 404 (933)
T 2jgd_A 353 TIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV-GFTTSNPLDARS--------------------------- 404 (933)
T ss_dssp EEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-----------------------------------------
T ss_pred EEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCc-cccCCCHHhccc---------------------------
Confidence 99999998 999999999999999999 9999999984 3222 1110000
Q ss_pred HHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcC--CCCCcEEEEEEecCCC
Q 004227 355 SITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPVLIHVVTEKGK 432 (767)
Q Consensus 355 ~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~--~~~~P~lI~v~T~KG~ 432 (767)
+.+...+++++||.++ .|||+|++++.++++++++. ...+|++|++.|.+++
T Consensus 405 -------------------------~~~~~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~ 458 (933)
T 2jgd_A 405 -------------------------TPYCTDIGKMVQAPIF-HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458 (933)
T ss_dssp ---------------------------CGGGGGGTTTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_pred -------------------------chhHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeec
Confidence 0111234899999987 78999999999998877631 2478999999999998
Q ss_pred CCChhhh---------------------------------------------------------------cccccccccc
Q 004227 433 GYPPAEA---------------------------------------------------------------AADRMHGVVK 449 (767)
Q Consensus 433 G~~~ae~---------------------------------------------------------------~~~~~Hg~~~ 449 (767)
|...... ....||++.+
T Consensus 459 GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~ 538 (933)
T 2jgd_A 459 GHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLN 538 (933)
T ss_dssp -----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSS
T ss_pred CcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccc
Confidence 8643211 0012344332
Q ss_pred c----cCccccc-------------cCC--------------------CCcchhHHHHHHHHHHHHHHhCCCEEEEeccc
Q 004227 450 F----DPKTGKQ-------------FKT--------------------KSPTLTYTQYFAESLIKEAETDDKIVAIHAAM 492 (767)
Q Consensus 450 f----d~~~g~~-------------~~~--------------------~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~ 492 (767)
+ +..|+.. .+. .....+|..+++.+|.+++++|++|+++++|+
T Consensus 539 ~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv 618 (933)
T 2jgd_A 539 HEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDS 618 (933)
T ss_dssp CCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred cccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCcc
Confidence 2 2223211 000 01134788899999999999999999999999
Q ss_pred cCC------------------cChhhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCe--eEEe-echhHHH---hHHH
Q 004227 493 GGG------------------TGLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVK--PFCA-IYSSFLQ---RGYD 547 (767)
Q Consensus 493 ~gs------------------~gl~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~r--P~~~-tys~Fl~---ra~d 547 (767)
+.+ +++..|.++| |+||+|+||+|++++|+|+|+|+.|.+ |+++ +|++|++ |++|
T Consensus 619 ~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~D 698 (933)
T 2jgd_A 619 GRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVID 698 (933)
T ss_dssp TTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHH
T ss_pred CCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHH
Confidence 876 4578899999 999999999999999999999999988 9887 6999996 9999
Q ss_pred HHHHhh-h--cCCCCEEEEeecCCccCCCCCCCCC--hhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhh-CCCCEEEE
Q 004227 548 QVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCG--AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVI-DDRPSCFR 621 (767)
Q Consensus 548 Qi~~~~-a--~~~lpViiv~~~~Gl~G~dG~TH~~--~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~-~~~P~~ir 621 (767)
|+++++ + .+++||++++++ |+.| .|++||+ .+++..++++|||+|+.|+|+.|+++|+++++.. .++|++||
T Consensus 699 Qii~~~~ak~~~~~~vv~~l~~-G~~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~ 776 (933)
T 2jgd_A 699 QFISSGEQKWGRMCGLVMLLPH-GYEG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVM 776 (933)
T ss_dssp HTTTTHHHHHCCCCCCEEEEEC-CCSS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEE
T ss_pred HHHHHHHHHHccCCCEEEEEeC-CCCC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999888 6 479999999998 5455 4999999 5555555677999999999999999999999533 37999999
Q ss_pred ecCCCCcc-cccCC----CCCCCCcccCceeEeecCCcE--EEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcH
Q 004227 622 FPRGNGIG-AVLPP----NNKGTPLEIGKGRILMEGDRV--AILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDT 694 (767)
Q Consensus 622 l~r~~~~~-~~~p~----~~~~~~~~igk~~vl~eG~dv--tIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~ 694 (767)
+||..... ..++. ....+.+++|++.+++ |+|| +|+++|.+...+++|++.|+++ +++|||+++++|||.
T Consensus 777 ~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld~ 853 (933)
T 2jgd_A 777 SPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFPH 853 (933)
T ss_dssp ECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEECEEESCCH
T ss_pred ecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEeeccCCCCH
Confidence 99865321 11110 0123556789988777 8899 6777777767777777888765 899999999999999
Q ss_pred HHHHHHhccCC---EEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccccc
Q 004227 695 DLIRQLANEHE---ILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCRL 753 (767)
Q Consensus 695 e~i~~~~~~~~---~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~~ 753 (767)
++|.+++++++ .||++||+. .||+|++|++.+.+.++. ..+++++|.||.|.+..+.
T Consensus 854 e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~~~v~~vg~~d~~~pa~g~ 914 (933)
T 2jgd_A 854 KAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--GASLRYAGRPASASPAVGH 914 (933)
T ss_dssp HHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--TCEEEEEEECCCSSSSCSC
T ss_pred HHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--CCceEEEecCCcCCCCcCC
Confidence 99999999887 899999987 699999999999987642 2579999999999987664
No 17
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=1.8e-56 Score=492.99 Aligned_cols=317 Identities=24% Similarity=0.326 Sum_probs=230.3
Q ss_pred EecCCCCCCh-hhhccccccccccccCccccccCCCC---cchhHHHHHHHHHHHHHHhCCCEEEEeccccCCc----Ch
Q 004227 427 VTEKGKGYPP-AEAAADRMHGVVKFDPKTGKQFKTKS---PTLTYTQYFAESLIKEAETDDKIVAIHAAMGGGT----GL 498 (767)
Q Consensus 427 ~T~KG~G~~~-ae~~~~~~Hg~~~fd~~~g~~~~~~~---~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~----gl 498 (767)
.|+|||||.+ +|+++++||+..+| +++|+..+... ...+|+++|+++|.+++++|++|+++++|++.+. .+
T Consensus 10 ~t~kg~g~~~~a~~~~~~~h~~~pf-~~~g~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~ 88 (369)
T 1ik6_A 10 LVPRGSGMKETAAAKFERNHMDSPD-LGTDDDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVT 88 (369)
T ss_dssp -----------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTT
T ss_pred CCCCCCCCCcchhhchhhhcccCCc-CCCCCcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhH
Confidence 6999999999 99999999999999 99997533212 4568999999999999999999999999997322 36
Q ss_pred hhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCeeEEe-echhHHHhHHHHHHHhhhcC--------CCCEEEEeecCC
Q 004227 499 NYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-IYSSFLQRGYDQVVHDVDLQ--------KLPVRFAMDRAG 568 (767)
Q Consensus 499 ~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~-tys~Fl~ra~dQi~~~~a~~--------~lpViiv~~~~G 568 (767)
..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +|++|++|++|||++++|++ ++||+++++++|
T Consensus 89 ~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 89 EGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp TTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 7899999 9999999999999999999999999999998 69999999999999999977 999999999988
Q ss_pred ccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHhhCCCCEEEEecCCCCcc--cccCCCCCCCCcccCce
Q 004227 569 LVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIG--AVLPPNNKGTPLEIGKG 646 (767)
Q Consensus 569 l~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~~~~~P~~irl~r~~~~~--~~~p~~~~~~~~~igk~ 646 (767)
.+| ||+|||+.+ .++|+++|||+|++|+|++|+++++++|++ .++|++||+|+..... ..+|. ..+.+++|++
T Consensus 169 ~~g-~g~~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~--~~~~~~~G~~ 243 (369)
T 1ik6_A 169 GTR-GGLYHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE--GDYVVEIGKA 243 (369)
T ss_dssp ------------H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC--SSCCCCTTCC
T ss_pred CCC-CCccccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC--CcccccCCce
Confidence 666 899999886 599999999999999999999999999997 7899999998754321 12332 2345788999
Q ss_pred eEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHH
Q 004227 647 RILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHF 725 (767)
Q Consensus 647 ~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~ 725 (767)
+++++|.|++|||+|+++..|++|+++|+ | +++|||++|++|||++.+++++++++++|++||+. .||||++|+++
T Consensus 244 ~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~ 320 (369)
T 1ik6_A 244 RVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRAL 320 (369)
T ss_dssp EEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHH
T ss_pred EEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHH
Confidence 99999999999999999999999999997 8 99999999999999999999998888899999997 69999999999
Q ss_pred HHhcCCCCCCceEEEEecCCccccccc
Q 004227 726 LTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 726 l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
+.++++..-..+++++|++|.|+++..
T Consensus 321 l~~~~~~~l~~pv~~vg~~d~~~~~~~ 347 (369)
T 1ik6_A 321 VAEKALDRLTAPVIRLAGPDVPQSPIA 347 (369)
T ss_dssp HHHHSGGGCSSCCEEEEECCCC-----
T ss_pred HHhhCccccCCCeEEEcCCCcCCCCHH
Confidence 999875211246799999999998765
No 18
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=3.3e-55 Score=524.74 Aligned_cols=540 Identities=14% Similarity=0.095 Sum_probs=373.9
Q ss_pred CCCCHHHHHHHH---HHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHhhcC-----CCCcEEEeCCCChHHHHHHH--h
Q 004227 153 KNLSTEDLEQLA---AELRADIVNSVSK-TGGHLSANLGVVELTLALHRVFN-----TPDDKIIWDVGHQAYVHKIL--T 221 (767)
Q Consensus 153 k~~~~~~L~~la---~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~~~~-----~p~Dr~i~s~GH~~y~~~~l--~ 221 (767)
.+++.+++.++- ..+|..=-++..+ .+|-..+..|+.-+.+++-..++ .++|. |+...|+...+.+. .
T Consensus 113 ~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~-v~gm~hRg~~~~Lan~~ 191 (868)
T 2yic_A 113 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEV-VIAMPHRGRLNVLANIV 191 (868)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEE-EEECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCE-EEeccccchHHHHHHHh
Confidence 356666655443 2333332223332 22333344555445444443332 46674 44457999988888 6
Q ss_pred CC--hHHhHHHHhc-CCC----CCCCC-C-CCCC-------------CCCCCCcccchhHHHHHHHHHHHHHcC------
Q 004227 222 GR--RSRMNTMRKT-SGL----AGFPK-R-EESV-------------HDAFGAGHSSTSISAGLGMAVARDILG------ 273 (767)
Q Consensus 222 G~--~~~l~tlr~~-ggl----~G~p~-~-~es~-------------~~~~g~G~~G~~ls~A~G~AlA~kl~g------ 273 (767)
|. ++.|..|.-. .+. +|-.+ . ..+. ......||+|+++|.|+|+|+|.++++
T Consensus 192 G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~ 271 (868)
T 2yic_A 192 GKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEG 271 (868)
T ss_dssp CCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTS
T ss_pred CCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCccc
Confidence 74 3444444111 011 01000 0 0000 001235899999999999999999864
Q ss_pred ----CCCeEEEEEcCCcc-cCcchHHHHHHHHHcCCC---EEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhch
Q 004227 274 ----KNNNVISVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQAST 344 (767)
Q Consensus 274 ----~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~n---li~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~ 344 (767)
.+..+||++|||++ +||.+|||||+|+.+++| +|+||+||++ +++++...
T Consensus 272 ~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~--------------------- 330 (868)
T 2yic_A 272 SDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDS--------------------- 330 (868)
T ss_dssp SSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHH---------------------
T ss_pred ccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCcccc---------------------
Confidence 56799999999996 899999999999999987 9999999974 33221100
Q ss_pred hHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcC--CCCCcE
Q 004227 345 NFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEM--PAPGPV 422 (767)
Q Consensus 345 ~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~--~~~~P~ 422 (767)
+ -..+...++++|||.++ .|||||++++..++++|.+. ..++|+
T Consensus 331 -------------------------------~--s~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~ar~~~~Pv 376 (868)
T 2yic_A 331 -------------------------------R--SSEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDV 376 (868)
T ss_dssp -------------------------------C--SSSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCE
T ss_pred -------------------------------c--cccCHHHHHHhCCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 0 00112235899999988 79999999999999877631 247999
Q ss_pred EEEEEecCCCCCChhhhcc-------ccccccc-c---------------------------------------ccC-c-
Q 004227 423 LIHVVTEKGKGYPPAEAAA-------DRMHGVV-K---------------------------------------FDP-K- 453 (767)
Q Consensus 423 lI~v~T~KG~G~~~ae~~~-------~~~Hg~~-~---------------------------------------fd~-~- 453 (767)
+|+++|.+++|.+..+... ..|+... + +.+ .
T Consensus 377 lIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~ 456 (868)
T 2yic_A 377 VIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEI 456 (868)
T ss_dssp EEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999987543210 1222110 0 000 0
Q ss_pred -----------------cc----------c---ccCCCC---cc-h---hHHH----------HHHHHH--HHHHHhCCC
Q 004227 454 -----------------TG----------K---QFKTKS---PT-L---TYTQ----------YFAESL--IKEAETDDK 484 (767)
Q Consensus 454 -----------------~g----------~---~~~~~~---~~-~---s~~~----------af~~aL--~~~~~~d~~ 484 (767)
++ + ..+... +. . .-+. +++++| ..+++++++
T Consensus 457 ~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~~ 536 (868)
T 2yic_A 457 EPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKL 536 (868)
T ss_dssp ---------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCE
T ss_pred ccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCC
Confidence 00 0 000000 00 0 1111 333332 255899999
Q ss_pred EEEEeccccCCc------------------Chhhh------hh-hCCCcEEeccccHHHHHHHHHHHHhcCC--eeEEe-
Q 004227 485 IVAIHAAMGGGT------------------GLNYF------QK-RFPDRCFDVGIAEQHAVTFAAGLASEGV--KPFCA- 536 (767)
Q Consensus 485 ivvi~aD~~gs~------------------gl~~f------~~-~~P~R~~d~GIaE~~~vg~AaGlA~~G~--rP~~~- 536 (767)
|+++++|++.+| .++.| ++ .+|+||+|+||+|++++|+|+|+|+.|. +|+++
T Consensus 537 V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~ea 616 (868)
T 2yic_A 537 VRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEA 616 (868)
T ss_dssp EEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred EEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEE
Confidence 999999998752 25678 55 7899999999999999999999999995 45555
Q ss_pred echhHHHhH---HHHHHHhh---hcCCCCEEEEeecCCccCCCCCCCCC--hhHHHHhhcCCCcEEEecCCHHHHHHHHH
Q 004227 537 IYSSFLQRG---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (767)
Q Consensus 537 tys~Fl~ra---~dQi~~~~---a~~~lpViiv~~~~Gl~G~dG~TH~~--~~Dla~lr~iPg~~V~~Psd~~E~~~~l~ 608 (767)
+|++|++++ +||+++++ ..+++||+++++++| .| +||+|++ .+++..|+++|||+|+.|+|+.|++++++
T Consensus 617 qf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr 694 (868)
T 2yic_A 617 QFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLR 694 (868)
T ss_dssp SSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHH
T ss_pred ehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHH
Confidence 599999887 99998876 357999999999877 67 9999998 77777779999999999999999999999
Q ss_pred HHHhhC-CCCEEEEecCCCCcc-cccCCC----CCCCCcccCceeE---eecCCcE--EEEEechhHHHHHHHHHHHhcC
Q 004227 609 TAAVID-DRPSCFRFPRGNGIG-AVLPPN----NKGTPLEIGKGRI---LMEGDRV--AILGYGSIVQQCVLAANMLKSQ 677 (767)
Q Consensus 609 ~A~~~~-~~P~~irl~r~~~~~-~~~p~~----~~~~~~~igk~~v---l~eG~dv--tIva~Gs~v~~al~Aa~~L~~~ 677 (767)
+++..+ ++|++|++||..+.. ...++. ...+..++|++.+ +++|+|| +|||+|.+ ..++.+++ +++
T Consensus 695 ~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~~~l~aa~--~~~ 771 (868)
T 2yic_A 695 RHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKE 771 (868)
T ss_dssp HHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-HHHHHHHH--HHH
T ss_pred HHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-HHHHHHHH--HhC
Confidence 987742 489999999863211 111110 0123337899887 7899999 99999998 77777766 567
Q ss_pred C-CcEEEEEcccCCCCcHHHHHHHhccCCE---EEEEcCCC-CCCHHHHHHHHHHhcCC-CCCCceEEEEecCCcccccc
Q 004227 678 D-ISVTVADARFCKPLDTDLIRQLANEHEI---LITVEEGS-VGGFGSHVCHFLTLSGI-LDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 678 G-I~v~VIdl~slkPlD~e~i~~~~~~~~~---vVvvEe~~-~GGlgs~I~~~l~~~~~-~d~~~k~~~~gl~D~f~~~~ 751 (767)
| ++++|||+++|+|||.++|.+++++++. +|++||+. .||+|++|++.+.+... ++ .+++++|.||.|.|..
T Consensus 772 g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~~~~l~--~~v~~vg~~d~~~p~~ 849 (868)
T 2yic_A 772 NREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHF--TGLKRISRRAMSAPSS 849 (868)
T ss_dssp TCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHCHHHH--TTCEEEEECCCSSSSC
T ss_pred CCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHHhhhcC--CCeEEeccCCcCCCCC
Confidence 8 9999999999999999999999988876 88888876 79999999999988421 12 3589999999999977
Q ss_pred cccc
Q 004227 752 RLLS 755 (767)
Q Consensus 752 ~~~~ 755 (767)
+.+.
T Consensus 850 g~~~ 853 (868)
T 2yic_A 850 GSSK 853 (868)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 7554
No 19
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.7e-54 Score=528.30 Aligned_cols=540 Identities=13% Similarity=0.082 Sum_probs=374.5
Q ss_pred CCCCHHHHHHHH---HHHHHHHHHHhhc-cCCCCCCcccHHHHHHHHHhhcC-----CCCcEEEeCCCChHHHHHHH--h
Q 004227 153 KNLSTEDLEQLA---AELRADIVNSVSK-TGGHLSANLGVVELTLALHRVFN-----TPDDKIIWDVGHQAYVHKIL--T 221 (767)
Q Consensus 153 k~~~~~~L~~la---~~iR~~i~~~v~~-~gGH~gsslg~vel~~aL~~~~~-----~p~Dr~i~s~GH~~y~~~~l--~ 221 (767)
.+++.+++.++- ..+|..=-++..+ .+|-..+..|+.-+.+++...++ .++| +++...|+...+.+. .
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D-~v~gm~hRg~~~~La~~~ 436 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDE-VVIAMPHRGRLNVLANIV 436 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSE-EEEECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCC-EEEeccccchHHHHHHHh
Confidence 356666655443 2233332222322 22333334666555555544332 4667 444457999998888 6
Q ss_pred CC--hHHhHHHHhc-CCC----CCCCC-C-CCCC-------------CCCCCCcccchhHHHHHHHHHHHHHcC------
Q 004227 222 GR--RSRMNTMRKT-SGL----AGFPK-R-EESV-------------HDAFGAGHSSTSISAGLGMAVARDILG------ 273 (767)
Q Consensus 222 G~--~~~l~tlr~~-ggl----~G~p~-~-~es~-------------~~~~g~G~~G~~ls~A~G~AlA~kl~g------ 273 (767)
|. ++.|..|.-. .+. +|-.+ . ..+. ......||+|+++|.|+|+|+|.++++
T Consensus 437 G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~ 516 (1113)
T 2xt6_A 437 GKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEG 516 (1113)
T ss_dssp CCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTS
T ss_pred CCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccCcc
Confidence 74 3444444211 011 01000 0 0000 011236899999999999999999876
Q ss_pred ----CCCeEEEEEcCCcc-cCcchHHHHHHHHHcCCC---EEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhch
Q 004227 274 ----KNNNVISVIGDGAM-TAGQAYEAMNNAGFLDAN---LIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQAST 344 (767)
Q Consensus 274 ----~~~~Vv~viGDGal-~eG~~~EAln~A~~~~~n---li~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~ 344 (767)
.+..+||++|||++ +||.+|||||+|+.+++| +|+||+||++ +++++.... .
T Consensus 517 ~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~--s----------------- 577 (1113)
T 2xt6_A 517 SDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSR--S----------------- 577 (1113)
T ss_dssp SBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHC--S-----------------
T ss_pred ccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccc--c-----------------
Confidence 57889999999995 899999999999999987 9999999974 332211000 0
Q ss_pred hHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHc--CCCCCcE
Q 004227 345 NFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPV 422 (767)
Q Consensus 345 ~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~--~~~~~P~ 422 (767)
..+...++++|||..+ .|||||++++..++++|.+ ...++|+
T Consensus 578 -----------------------------------~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~~r~~~~Pv 621 (1113)
T 2xt6_A 578 -----------------------------------SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDV 621 (1113)
T ss_dssp -----------------------------------SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCE
T ss_pred -----------------------------------ccCHHHHHHhcCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 0111234899999987 7999999999999887754 1247999
Q ss_pred EEEEEecCCCCCChhhhcc-------ccc--cccc--------------------------------------cccC-c-
Q 004227 423 LIHVVTEKGKGYPPAEAAA-------DRM--HGVV--------------------------------------KFDP-K- 453 (767)
Q Consensus 423 lI~v~T~KG~G~~~ae~~~-------~~~--Hg~~--------------------------------------~fd~-~- 453 (767)
+|+++|++++|.+...... ..| |.-+ .+.+ .
T Consensus 622 lIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~ 701 (1113)
T 2xt6_A 622 VIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEI 701 (1113)
T ss_dssp EEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999987543210 011 1100 0000 0
Q ss_pred -----------------ccc-------------ccCCCC----c-ch--hHHH------HHHHHHH------HHHHhCCC
Q 004227 454 -----------------TGK-------------QFKTKS----P-TL--TYTQ------YFAESLI------KEAETDDK 484 (767)
Q Consensus 454 -----------------~g~-------------~~~~~~----~-~~--s~~~------af~~aL~------~~~~~d~~ 484 (767)
++. ..+... . .. .-+. ++..++. .+++++++
T Consensus 702 ~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~ 781 (1113)
T 2xt6_A 702 EPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKL 781 (1113)
T ss_dssp ---------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCE
T ss_pred ccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCC
Confidence 000 000000 0 00 0011 1122333 34899999
Q ss_pred EEEEeccccCCc------------------Chhhh------hh-hCCCcEEeccccHHHHHHHHHHHHhcCC--eeEEe-
Q 004227 485 IVAIHAAMGGGT------------------GLNYF------QK-RFPDRCFDVGIAEQHAVTFAAGLASEGV--KPFCA- 536 (767)
Q Consensus 485 ivvi~aD~~gs~------------------gl~~f------~~-~~P~R~~d~GIaE~~~vg~AaGlA~~G~--rP~~~- 536 (767)
|+++++|++.++ .+++| .+ .+|+|++|+||+|++++|+|+|+|+.|. +|+++
T Consensus 782 V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Ea 861 (1113)
T 2xt6_A 782 VRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEA 861 (1113)
T ss_dssp EEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred EEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 999999998754 36788 65 7899999999999999999999999995 55555
Q ss_pred echhHHHhH---HHHHHHhh---hcCCCCEEEEeecCCccCCCCCCCCC--hhHHHHhhcCCCcEEEecCCHHHHHHHHH
Q 004227 537 IYSSFLQRG---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (767)
Q Consensus 537 tys~Fl~ra---~dQi~~~~---a~~~lpViiv~~~~Gl~G~dG~TH~~--~~Dla~lr~iPg~~V~~Psd~~E~~~~l~ 608 (767)
+|++|++++ +||+++++ ..+++||+++++++| .| +||+||+ .+++..|+++|||+|+.|+|+.|++++++
T Consensus 862 qf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr 939 (1113)
T 2xt6_A 862 QFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLR 939 (1113)
T ss_dssp SSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHH
T ss_pred EEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHH
Confidence 599999887 99998886 367999999999877 67 9999999 55555559999999999999999999999
Q ss_pred HHHhhC-CCCEEEEecCCCCcc-cccCCC----CCCCCcccCceeE---eecCCcE--EEEEechhHHHHHHHHHHHhcC
Q 004227 609 TAAVID-DRPSCFRFPRGNGIG-AVLPPN----NKGTPLEIGKGRI---LMEGDRV--AILGYGSIVQQCVLAANMLKSQ 677 (767)
Q Consensus 609 ~A~~~~-~~P~~irl~r~~~~~-~~~p~~----~~~~~~~igk~~v---l~eG~dv--tIva~Gs~v~~al~Aa~~L~~~ 677 (767)
+++..+ ++|++|++||..+.. ...+.. ...+..++|++.+ +++|+|| +|||+|.+ ..+++|++ +++
T Consensus 940 ~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~aa~--~~~ 1016 (1113)
T 2xt6_A 940 RHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKE 1016 (1113)
T ss_dssp HHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHHHH--HHH
T ss_pred HHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-HHHHHHHH--HhC
Confidence 988743 489999999863211 111110 0123337899887 7899999 99999998 77887776 567
Q ss_pred C-CcEEEEEcccCCCCcHHHHHHHhccCCE---EEEEcCCC-CCCHHHHHHHHHHhcCC-CCCCceEEEEecCCcccccc
Q 004227 678 D-ISVTVADARFCKPLDTDLIRQLANEHEI---LITVEEGS-VGGFGSHVCHFLTLSGI-LDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 678 G-I~v~VIdl~slkPlD~e~i~~~~~~~~~---vVvvEe~~-~GGlgs~I~~~l~~~~~-~d~~~k~~~~gl~D~f~~~~ 751 (767)
| ++++|||+++|+|||.++|.++++++++ +|++||+. .||+|++|++.+.+... ++ .+++++|.||.|.|..
T Consensus 1017 g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~~~~l~--~~~~~vg~~d~~~p~~ 1094 (1113)
T 2xt6_A 1017 NREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHF--TGLKRISRRAMSAPSS 1094 (1113)
T ss_dssp TCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHSHHHH--TTCEEEEECCCSSSSC
T ss_pred CCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHHhhhcC--CCeEEEccCCcCCCCC
Confidence 8 9999999999999999999999998876 88998886 79999999999988421 12 3589999999999977
Q ss_pred cccc
Q 004227 752 RLLS 755 (767)
Q Consensus 752 ~~~~ 755 (767)
+.+.
T Consensus 1095 g~~~ 1098 (1113)
T 2xt6_A 1095 GSSK 1098 (1113)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 6554
No 20
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=3.8e-51 Score=443.75 Aligned_cols=283 Identities=23% Similarity=0.289 Sum_probs=251.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCEEEEeccccCCc----ChhhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCeeEEe-ec
Q 004227 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGT----GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-IY 538 (767)
Q Consensus 465 ~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~----gl~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~-ty 538 (767)
.+|+++|+++|.+++++|++++++++|++.+. .+..|+++| |+||+|+||+|++|+++|+|+|++|+|||++ +|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~ 82 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQF 82 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSS
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999997532 347899999 9999999999999999999999999999998 69
Q ss_pred hhHHHhHHHHHHHhhhc--------CCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHHH
Q 004227 539 SSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATA 610 (767)
Q Consensus 539 s~Fl~ra~dQi~~~~a~--------~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A 610 (767)
++|++|++|||++++|+ +++||+++.++ |..+.+|++|++ +|.++++++||++|++|+|++|+++++++|
T Consensus 83 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 83 FGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp GGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999997 89999999885 556778888888 667999999999999999999999999999
Q ss_pred HhhCCCCEEEEecCCCCcc--cccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEccc
Q 004227 611 AVIDDRPSCFRFPRGNGIG--AVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARF 688 (767)
Q Consensus 611 ~~~~~~P~~irl~r~~~~~--~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~s 688 (767)
++ .++|++||+|+..... ..+|. ..+.+++||++++++|+|++|||+|+++..|++|++.|+++|++++|||+++
T Consensus 161 ~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 237 (324)
T 1w85_B 161 IR-DNDPVIFLEHLKLYRSFRQEVPE--GEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 237 (324)
T ss_dssp HH-SSSCEEEEEETTTSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred HH-cCCCEEEEechHhcCCCCCCCCC--ccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence 87 7899999998765321 22332 2345789999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccccc
Q 004227 689 CKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 689 lkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
++|||++.+++++++++++||+||+. .||||++|++++.++++..-..+++++|+||.|+++..
T Consensus 238 l~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~ 302 (324)
T 1w85_B 238 VQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ 302 (324)
T ss_dssp EESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG
T ss_pred ecCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH
Confidence 99999999999998888899999996 79999999999999865211246899999999998765
No 21
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=4.9e-51 Score=445.65 Aligned_cols=284 Identities=20% Similarity=0.291 Sum_probs=252.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEeccccC--C-c-ChhhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCeeEEe-e
Q 004227 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGG--G-T-GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-I 537 (767)
Q Consensus 464 ~~s~~~af~~aL~~~~~~d~~ivvi~aD~~g--s-~-gl~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~-t 537 (767)
+.+|+++|+++|.+++++|++|+++++|++. + . .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 14 ~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~~ 93 (341)
T 2ozl_B 14 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFM 93 (341)
T ss_dssp EEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 4789999999999999999999999999983 3 2 367899999 9999999999999999999999999999998 6
Q ss_pred chhHHHhHHHHHHHhhhc--------CCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHH
Q 004227 538 YSSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (767)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~--------~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~ 609 (767)
|++|++|++|||++++++ +++||++++++ |..|.||+||++..| ++++++|||+|++|+|++|+++++++
T Consensus 94 f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~~ 171 (341)
T 2ozl_B 94 TFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIKS 171 (341)
T ss_dssp SGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999883 99999999997 678889999977777 89999999999999999999999999
Q ss_pred HHhhCCCCEEEEecCCCCc-cccc----CCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEE
Q 004227 610 AAVIDDRPSCFRFPRGNGI-GAVL----PPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVA 684 (767)
Q Consensus 610 A~~~~~~P~~irl~r~~~~-~~~~----p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VI 684 (767)
|++ .++|++||++|+... ...+ ++ ..+.+++||++++++|.|++|||+|+++..|++|++.|+++|++++||
T Consensus 172 a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~--~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv 248 (341)
T 2ozl_B 172 AIR-DNNPVVVLENELMYGVPFEFPPEAQS--KDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVI 248 (341)
T ss_dssp HHH-SSSCEEEEECHHHHTCEEECCHHHHS--TTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHh-cCCCEEEEEChhhhcCCCCcCCccCC--ccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEE
Confidence 987 579999999975311 1112 22 245678999999999999999999999999999999999999999999
Q ss_pred EcccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHh-cCCCCCCceEEEEecCCccccccc
Q 004227 685 DARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTL-SGILDGPLKVFIFSLIQKLETDCR 752 (767)
Q Consensus 685 dl~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~-~~~~d~~~k~~~~gl~D~f~~~~~ 752 (767)
|+++++|||++.+++++++++.+|++||+. .||||++|++++.+ +++..-+.+++++|+||.|+++..
T Consensus 249 ~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~ 318 (341)
T 2ozl_B 249 NMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK 318 (341)
T ss_dssp ECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH
T ss_pred eeeeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcH
Confidence 999999999999999998888899999998 69999999999999 875211356899999999998753
No 22
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=2.3e-51 Score=448.55 Aligned_cols=297 Identities=18% Similarity=0.261 Sum_probs=252.0
Q ss_pred ccCccccccCCCCcchhHHHHHHHHHHHHHHhCCCEEEEeccccC-Cc--ChhhhhhhC-CCcEEeccccHHHHHHHHHH
Q 004227 450 FDPKTGKQFKTKSPTLTYTQYFAESLIKEAETDDKIVAIHAAMGG-GT--GLNYFQKRF-PDRCFDVGIAEQHAVTFAAG 525 (767)
Q Consensus 450 fd~~~g~~~~~~~~~~s~~~af~~aL~~~~~~d~~ivvi~aD~~g-s~--gl~~f~~~~-P~R~~d~GIaE~~~vg~AaG 525 (767)
||+.++.+.....+..+|+++++++|.+++++|++++++++|++. ++ .+..|+++| |+||+|+||+|++|+++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G 85 (342)
T 2bfd_B 6 FQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIG 85 (342)
T ss_dssp --------CCSCEEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHH
T ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHH
Confidence 566655543333455789999999999999999999999999973 22 457899999 99999999999999999999
Q ss_pred HHhcCCeeEEe-echhHHHhHHHHHHHhhhcCCC---------CEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEE
Q 004227 526 LASEGVKPFCA-IYSSFLQRGYDQVVHDVDLQKL---------PVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVM 595 (767)
Q Consensus 526 lA~~G~rP~~~-tys~Fl~ra~dQi~~~~a~~~l---------pViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~ 595 (767)
+|++|+|||++ +|++|++|++|||++++|+++. ||+++++++| +.||+|||+.+|++++|++||++|+
T Consensus 86 ~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g--~~~G~th~~~~d~~~l~~iP~l~V~ 163 (342)
T 2bfd_B 86 IAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC--VGHGALYHSQSPEAFFAHCPGIKVV 163 (342)
T ss_dssp HHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC--CSSCGGGSSCCCHHHHHTSTTCEEE
T ss_pred HHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC--CCCCcchhhHhHHHHHhcCCCcEEE
Confidence 99999999997 6999999999999999986554 9999999877 3699999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHhhCCCCEEEEecCCCCcc--cccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHH
Q 004227 596 APSDEAELMHMVATAAVIDDRPSCFRFPRGNGIG--AVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANM 673 (767)
Q Consensus 596 ~Psd~~E~~~~l~~A~~~~~~P~~irl~r~~~~~--~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~ 673 (767)
+|+|++|+++++++|++ .++|++||+|+..... ..+|. ..+.+++|+++++++|.|++|||+|++++.|++|+++
T Consensus 164 ~Psd~~e~~~~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~ 240 (342)
T 2bfd_B 164 IPRSPFQAKGLLLSCIE-DKNPCIFFEPKILYRAAAEEVPI--EPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASM 240 (342)
T ss_dssp CCSSHHHHHHHHHHHHH-SSSCEEEEEEGGGTTSCCEEEES--SCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHHh-cCCcEEEEecchhcCCCCCCCCC--cccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHH
Confidence 99999999999999987 4899999887432111 12332 2345788999999999999999999999999999999
Q ss_pred HhcC-CCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 674 LKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 674 L~~~-GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
|+++ ||+++|||+++++|||++.+++++++++++|++||+. .||||++|++++.++++..-..+++++|++|.|.++.
T Consensus 241 L~~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~ 320 (342)
T 2bfd_B 241 AKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI 320 (342)
T ss_dssp HHHHHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST
T ss_pred HHhhcCCCEEEEeeeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH
Confidence 9999 9999999999999999999999998888899999996 7999999999999887421124678999999998754
No 23
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=1e-50 Score=440.32 Aligned_cols=283 Identities=20% Similarity=0.280 Sum_probs=251.3
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEeccccCCc----ChhhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCeeEEe-e
Q 004227 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGT----GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-I 537 (767)
Q Consensus 464 ~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~----gl~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~-t 537 (767)
+.+|+++|+++|.+++++|++|+++++|++.+. .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 358999999999999999999999999997533 347899999 9999999999999999999999999999998 6
Q ss_pred chhHHHhHHHHHHHhhhc--------CCCCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHH
Q 004227 538 YSSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (767)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~--------~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~ 609 (767)
|++|++|++|||++++|+ +++|++++.++ |..+.+|++|++ +|.++++++||++|++|+|++|+++++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999997 89999999885 556778888888 78899999999999999999999999999
Q ss_pred HHhhCCCCEEEEecCCCCcc--cccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcc
Q 004227 610 AAVIDDRPSCFRFPRGNGIG--AVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (767)
Q Consensus 610 A~~~~~~P~~irl~r~~~~~--~~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~ 687 (767)
|++ .++|++||+|+..... .++|. ..+.+++||++++++|.|++||++|++++.|++|++.|+++||+++|||++
T Consensus 161 a~~-~~~Pv~i~~p~~l~~~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 237 (324)
T 1umd_B 161 AIR-DEDPVVFLEPKRLYRSVKEEVPE--EDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLR 237 (324)
T ss_dssp HHH-CSSCEEEEEEGGGSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHh-cCCCEEEEechHhcCCCCCCcCC--CCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 997 7899999888754221 22332 234578999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCcccccc
Q 004227 688 FCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETDC 751 (767)
Q Consensus 688 slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~~ 751 (767)
+++|||++.+++++++++++|++||+. .||||++|++.+.++++..-+.+++++|+||.|+++.
T Consensus 238 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~ 302 (324)
T 1umd_B 238 TLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA 302 (324)
T ss_dssp EEETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST
T ss_pred eecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH
Confidence 999999999999998888999999997 7999999999999886421124689999999998876
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=2.5e-49 Score=431.88 Aligned_cols=280 Identities=21% Similarity=0.281 Sum_probs=247.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCEEEEeccccCCc----ChhhhhhhC-CCcEEeccccHHHHHHHHHHHHhcCCeeEEe-e
Q 004227 464 TLTYTQYFAESLIKEAETDDKIVAIHAAMGGGT----GLNYFQKRF-PDRCFDVGIAEQHAVTFAAGLASEGVKPFCA-I 537 (767)
Q Consensus 464 ~~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~----gl~~f~~~~-P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~-t 537 (767)
+.+|+++|+++|.+++++|++++++++|++++. .++.|+++| |+||+|+||+|++|+++|+|+|++|+|||++ +
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t 83 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ 83 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEec
Confidence 358999999999999999999999999997433 367899999 9999999999999999999999999999997 6
Q ss_pred chhHHHhHHHHHHHhhhcCC--------CCEEEEeecCCccCCCCCCCCChhHHHHhhcCCCcEEEecCCHHHHHHHHHH
Q 004227 538 YSSFLQRGYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVAT 609 (767)
Q Consensus 538 ys~Fl~ra~dQi~~~~a~~~--------lpViiv~~~~Gl~G~dG~TH~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~ 609 (767)
|++|++|++|||++++|+++ +||+++++++| +.||+|||+.+|+++++++|||+|++|+|++|+++++++
T Consensus 84 ~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 84 FADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp CGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99999999999999988655 99999998887 689999999999999999999999999999999999999
Q ss_pred HHhhCCCCEEEEec----CCCCc---cc-----------ccCCCCCCCCcccCceeEeecCCcEEEEEechhHHHHHHHH
Q 004227 610 AAVIDDRPSCFRFP----RGNGI---GA-----------VLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAA 671 (767)
Q Consensus 610 A~~~~~~P~~irl~----r~~~~---~~-----------~~p~~~~~~~~~igk~~vl~eG~dvtIva~Gs~v~~al~Aa 671 (767)
|++ .++|++||+| |+... .. .+|. ..+.+++||++++++|.|++|||+|++++.|++|+
T Consensus 162 A~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa 238 (338)
T 1qs0_B 162 SIE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD--GYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAA 238 (338)
T ss_dssp HHH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES--SCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHH
T ss_pred HHh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCC--CCcccccCceeEecCCCCEEEEEeCHHHHHHHHHH
Confidence 987 4899999777 44321 00 1222 23457789999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHhcCCCCCCceEEEEecCCccccc
Q 004227 672 NMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKVFIFSLIQKLETD 750 (767)
Q Consensus 672 ~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~-~GGlgs~I~~~l~~~~~~d~~~k~~~~gl~D~f~~~ 750 (767)
+. +|++++|||+++++|||++.+++++++++++||+||+. .||||++|++++.++++..-..+++++|+||.|.++
T Consensus 239 ~~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~ 315 (338)
T 1qs0_B 239 EE---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPH 315 (338)
T ss_dssp HH---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCS
T ss_pred HH---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcH
Confidence 98 59999999999999999999999998888999999997 799999999999998753222468999999999776
Q ss_pred c
Q 004227 751 C 751 (767)
Q Consensus 751 ~ 751 (767)
.
T Consensus 316 ~ 316 (338)
T 1qs0_B 316 A 316 (338)
T ss_dssp T
T ss_pred H
Confidence 4
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.96 E-value=1.2e-27 Score=263.45 Aligned_cols=230 Identities=17% Similarity=0.140 Sum_probs=182.0
Q ss_pred CCCCCHHHHHH---HHHHHHHHHHHHhh-ccCCCCCCc---ccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCC-
Q 004227 152 MKNLSTEDLEQ---LAAELRADIVNSVS-KTGGHLSAN---LGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR- 223 (767)
Q Consensus 152 ~k~~~~~~L~~---la~~iR~~i~~~v~-~~gGH~gss---lg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~- 223 (767)
.++++.++|.+ .+.++|....+++. ..+||+|++ .|+..++++++..++..+|+|++ +|+.|+|++++|+
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~--s~r~~~~~~~~G~~ 107 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFP--YYRDHGLALALGIP 107 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEEC--CTTTHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEe--CcHHHHHHHHcCCC
Confidence 45677777665 68999999999997 478998766 55566777777888665699998 8899999999998
Q ss_pred -hHHhHHHHhc------C-CCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHH
Q 004227 224 -RSRMNTMRKT------S-GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA 295 (767)
Q Consensus 224 -~~~l~tlr~~------g-gl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EA 295 (767)
.+.|.+||+. | ++++||...+ ......+|++|+++|.|+|+|+|.++.+++++|||++|||++++|.+|||
T Consensus 108 ~~~~l~~~~g~~~g~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea 186 (367)
T 1umd_A 108 LKELLGQMLATKADPNKGRQMPEHPGSKA-LNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG 186 (367)
T ss_dssp HHHHHHHHHTBTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccc-cCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH
Confidence 4789999884 3 3666774322 23345789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 004227 296 MNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA 375 (767)
Q Consensus 296 ln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~ 375 (767)
||+|+.+++|+++||+||++ ++.+. .. .
T Consensus 187 l~~A~~~~lpvi~vv~NN~~-gi~~~--------~~----------------------------------~--------- 214 (367)
T 1umd_A 187 INFAAVQGAPAVFIAENNFY-AISVD--------YR----------------------------------H--------- 214 (367)
T ss_dssp HHHHHHTTCSEEEEEEECSE-ETTEE--------HH----------------------------------H---------
T ss_pred HHHHHHhCcCEEEEEecCCe-eeccC--------hh----------------------------------h---------
Confidence 99999999999999999994 32110 00 0
Q ss_pred hhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHc--CCCCCcEEEEEEecCCCCCChhh
Q 004227 376 RGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPAE 438 (767)
Q Consensus 376 r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~--~~~~~P~lI~v~T~KG~G~~~ae 438 (767)
..-..+...++++|||.++ .|||+|..++.++++++.+ ...++|++|+++|.+++|++.+.
T Consensus 215 -~~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D 277 (367)
T 1umd_A 215 -QTHSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSAD 277 (367)
T ss_dssp -HCSSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTC
T ss_pred -ccCCCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCC
Confidence 0001234456999999998 7999999999887776543 13579999999999999998763
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.90 E-value=1e-22 Score=223.95 Aligned_cols=221 Identities=22% Similarity=0.239 Sum_probs=166.7
Q ss_pred CCCCCHHHHHHHHHHH---HHH---HHHHhh-ccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCCh
Q 004227 152 MKNLSTEDLEQLAAEL---RAD---IVNSVS-KTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRR 224 (767)
Q Consensus 152 ~k~~~~~~L~~la~~i---R~~---i~~~v~-~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~~ 224 (767)
+.+++.++|.++-+.+ |.. +..... +.-|+.+++.|+..+.+++...++ |+|.++. .|+.+++.+..|..
T Consensus 38 ~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~-~~D~v~~--~~R~~~~~~~~G~~ 114 (368)
T 1w85_A 38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALE-KEDFILP--GYRDVPQIIWHGLP 114 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCC-TTCEEEC--CSSCHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcC-CcCEEEe--cchhHHHHHhcCCC
Confidence 4567878777665433 433 212221 122788899999999999988884 7897666 49999999999973
Q ss_pred --HHhHHHHhc--CCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHH
Q 004227 225 --SRMNTMRKT--SGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAG 300 (767)
Q Consensus 225 --~~l~tlr~~--ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~ 300 (767)
..|..|+.. |+ +-|+ ......+.|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+||+|+
T Consensus 115 ~~~~~~el~G~~~G~-~~h~----~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~ 189 (368)
T 1w85_A 115 LYQAFLFSRGHFHGN-QIPE----GVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAG 189 (368)
T ss_dssp HHHHHHHHHTCGGGG-CCCT----TCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCC-CCCc----ccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHH
Confidence 445565322 32 1122 12334578999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhcc
Q 004227 301 FLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI 379 (767)
Q Consensus 301 ~~~~nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~ 379 (767)
.+++|+++||+||++ ++.++..+. -
T Consensus 190 ~~~lpvi~vv~NN~~gi~~~~~~~~------------------------------------------------------~ 215 (368)
T 1w85_A 190 AFKAPAIFVVQNNRFAISTPVEKQT------------------------------------------------------V 215 (368)
T ss_dssp HTTCCEEEEEEECSEETTEEGGGTC------------------------------------------------------S
T ss_pred HHCcCEEEEEEcCCccceecccccc------------------------------------------------------C
Confidence 999999999999984 332221100 0
Q ss_pred CCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHc--CCCCCcEEEEEEecCCCCCC
Q 004227 380 SASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYP 435 (767)
Q Consensus 380 ~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~--~~~~~P~lI~v~T~KG~G~~ 435 (767)
.++...++++|||.++ .|||||++++.++++++.+ ...++|++|++.|.+.+|+.
T Consensus 216 ~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs 272 (368)
T 1w85_A 216 AKTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHT 272 (368)
T ss_dssp CSCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSC
T ss_pred CCCHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCC
Confidence 1223455899999988 7899999999999988764 13579999999999999987
No 27
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.90 E-value=6e-23 Score=225.44 Aligned_cols=228 Identities=20% Similarity=0.199 Sum_probs=165.4
Q ss_pred cccCCCCCHHHHHHHHHH---HHHHHHHHh-----hccCCCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHH
Q 004227 149 PIHMKNLSTEDLEQLAAE---LRADIVNSV-----SKTGGHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKIL 220 (767)
Q Consensus 149 p~~~k~~~~~~L~~la~~---iR~~i~~~v-----~~~gGH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l 220 (767)
|.+..+++.++|.++-+. +|+.=..+. .+..|+.+++.|+..+.+++...+ .|.|.++. +|+.++|.+.
T Consensus 25 ~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al-~~~D~i~~--~yR~~~~~~~ 101 (365)
T 2ozl_A 25 PPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGI-NPTDHLIT--AYRAHGFTFT 101 (365)
T ss_dssp SCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTS-CTTSEEEC--CSCCHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhh-CCCCEEeh--HHHHHHHHHh
Confidence 455556777777665433 333222222 234588889999999989888888 47898887 7999999999
Q ss_pred hCC--hHHhHHHHhc--C---CCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchH
Q 004227 221 TGR--RSRMNTMRKT--S---GLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAY 293 (767)
Q Consensus 221 ~G~--~~~l~tlr~~--g---gl~G~p~~~es~~~~~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~ 293 (767)
.|. .+.|..|... | |.+|..+.. +.....+.|++|+++|+|+|+|+|.+++++++.|||++|||++++|.+|
T Consensus 102 ~G~~~~~i~~e~~g~~~g~~~g~gg~~H~~-~~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~ 180 (365)
T 2ozl_A 102 RGLSVREILAELTGRKGGCAKGKGGSMHMY-AKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIF 180 (365)
T ss_dssp TTCCHHHHHHHHTTCTTSTTTTSSCTTCCC-BTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHH
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCCCcC-ccccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHH
Confidence 997 3556666322 1 122222211 1222234599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 004227 294 EAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVD 372 (767)
Q Consensus 294 EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~ 372 (767)
|+||+|+.+++|+|+||+||++ ++.++..+
T Consensus 181 Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~------------------------------------------------- 211 (365)
T 2ozl_A 181 EAYNMAALWKLPCIFICENNRYGMGTSVERA------------------------------------------------- 211 (365)
T ss_dssp HHHHHHHHTTCCEEEEEEECSEETTEEHHHH-------------------------------------------------
T ss_pred HHHHHHHHHCcCEEEEEECCCcccCCCcccc-------------------------------------------------
Confidence 9999999999999999999974 22211000
Q ss_pred HHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHc--CCCCCcEEEEEEecCCCCCChh
Q 004227 373 EYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE--MPAPGPVLIHVVTEKGKGYPPA 437 (767)
Q Consensus 373 ~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~--~~~~~P~lI~v~T~KG~G~~~a 437 (767)
.-+++... +++|+..+ .|||||++++.+++++|.+ ...++|++|++.|.+..|....
T Consensus 212 -----~~~~~~~~--ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~ 270 (365)
T 2ozl_A 212 -----AASTDYYK--RGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMS 270 (365)
T ss_dssp -----CSCCCGGG--TTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTT
T ss_pred -----cCCCCHHH--HhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCC
Confidence 00111111 57899887 6899999999999887753 1368999999999999998743
No 28
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.89 E-value=1.4e-22 Score=225.25 Aligned_cols=198 Identities=18% Similarity=0.140 Sum_probs=152.1
Q ss_pred CCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCC--hHHhHHHHhc------C-CCCCCCCCCCCCCCCC
Q 004227 180 GHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTMRKT------S-GLAGFPKREESVHDAF 250 (767)
Q Consensus 180 GH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~--~~~l~tlr~~------g-gl~G~p~~~es~~~~~ 250 (767)
++..++.|+.-+.+++-..+ .++|.++. .|+.+++.+..|. ++.|.+|+.. | ++++|+...+.. ...
T Consensus 84 ~~~~~~~GqEa~~vg~~~al-~~~D~v~~--~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~-~~~ 159 (400)
T 2bfd_A 84 SFYMTNYGEEGTHVGSAAAL-DNTDLVFG--QAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERH-FVT 159 (400)
T ss_dssp SCCCCCTTCHHHHHHHHHTS-CTTSEEEC--CSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTT-BCC
T ss_pred ceeecCCChHHHHHHHHHhc-CCCCEEEe--cCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccC-ccc
Confidence 35568888887777776666 57897775 7999999999997 4667888764 2 355565432222 335
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCCc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~~ 329 (767)
++|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+||+|+.+++|+|+||+||++ ++.++..+.
T Consensus 160 ~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~----- 234 (400)
T 2bfd_A 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQY----- 234 (400)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTC-----
T ss_pred cCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccC-----
Confidence 67999999999999999999999999999999999999999999999999999999999999974 333222110
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
-..+...++++|||.++ .|||||+++|.++
T Consensus 235 -------------------------------------------------~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a 264 (400)
T 2bfd_A 235 -------------------------------------------------RGDGIAARGPGYGIMSI-RVDGNDVFAVYNA 264 (400)
T ss_dssp -------------------------------------------------SSSTTGGGTGGGTCEEE-EEETTCHHHHHHH
T ss_pred -------------------------------------------------CCCCHHHHHHHcCCcEE-EEeCCCHHHHHHH
Confidence 01122345899999988 7999999999999
Q ss_pred HHHhHcC--CCCCcEEEEEEecCCCCCCh
Q 004227 410 FQRVKEM--PAPGPVLIHVVTEKGKGYPP 436 (767)
Q Consensus 410 l~~a~~~--~~~~P~lI~v~T~KG~G~~~ 436 (767)
++++.+. ..++|++|+++|.+-.|.+.
T Consensus 265 ~~~A~~~ar~~~~P~lIe~~tyR~~gHs~ 293 (400)
T 2bfd_A 265 TKEARRRAVAENQPFLIEAMTYRIGHAST 293 (400)
T ss_dssp HHHHHHHHHHHTCCEEEEEECCCCC--CC
T ss_pred HHHHHHHHHhCCCCEEEEEEeeeeCCCCC
Confidence 8877641 14789999999977655554
No 29
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.88 E-value=1.8e-21 Score=216.54 Aligned_cols=202 Identities=19% Similarity=0.146 Sum_probs=151.0
Q ss_pred CCCCCcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCC--hHHhHHHHhc--CCCCCC--C-CCCCCCCCC-CC
Q 004227 180 GHLSANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGR--RSRMNTMRKT--SGLAGF--P-KREESVHDA-FG 251 (767)
Q Consensus 180 GH~gsslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~--~~~l~tlr~~--ggl~G~--p-~~~es~~~~-~g 251 (767)
++..++.|+.-+.+++-..+ .++|.++. .|+.+++.+..|. .+.|..|.-. +...|+ + +-...+.+. .+
T Consensus 103 ~~~~~~~GqEA~~vg~~~al-~~~D~v~~--~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~ 179 (407)
T 1qs0_A 103 SFYMQSLGEEAIGSGQALAL-NRTDMCFP--TYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTI 179 (407)
T ss_dssp SCCCCCTTTHHHHHHHHHHS-CTTSEEEC--CSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCC
T ss_pred ccCcCCCChHHHHHHHHHhc-CCCCEEEe--cccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCcccc
Confidence 45568899888887776666 57898874 8999988888886 3556666321 111121 1 111112222 35
Q ss_pred CcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCCcc
Q 004227 252 AGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATPV 330 (767)
Q Consensus 252 ~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~~v 330 (767)
.|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+||+|+.+++|+|+||+||++ ++.++....+
T Consensus 180 ~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~----- 254 (407)
T 1qs0_A 180 SGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGG----- 254 (407)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTT-----
T ss_pred ccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccC-----
Confidence 7999999999999999999999999999999999999999999999999999999999999984 3322211000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
-..+...++++|||.++ .|||||++++.+++
T Consensus 255 ------------------------------------------------~~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~ 285 (407)
T 1qs0_A 255 ------------------------------------------------ESTTFAGRGVGCGIASL-RVDGNDFVAVYAAS 285 (407)
T ss_dssp ------------------------------------------------TTCCSTHHHHHTTCEEE-EEETTCHHHHHHHH
T ss_pred ------------------------------------------------CCCCHHHHHHHcCCeEE-EEcCCCHHHHHHHH
Confidence 01122334899999988 79999999999988
Q ss_pred HHhHcC--CCCCcEEEEEEecCCCCCChhh
Q 004227 411 QRVKEM--PAPGPVLIHVVTEKGKGYPPAE 438 (767)
Q Consensus 411 ~~a~~~--~~~~P~lI~v~T~KG~G~~~ae 438 (767)
+++.+. ..++|++|+++|.|++|++.++
T Consensus 286 ~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~D 315 (407)
T 1qs0_A 286 RWAAERARRGLGPSLIEWVTYRAGPHSTSD 315 (407)
T ss_dssp HHHHHHHHTTSCCEEEEEECCCCSCSSTTC
T ss_pred HHHHHHHHhcCCCEEEEEEeeccCCcCCCC
Confidence 877642 3579999999999999998775
No 30
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.88 E-value=4.7e-23 Score=229.02 Aligned_cols=256 Identities=14% Similarity=0.113 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh-hhhhh---hCCCcEEeccccHHHHHHHHHHHHhcCCeeEEeechh
Q 004227 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL-NYFQK---RFPDRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSS 540 (767)
Q Consensus 465 ~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl-~~f~~---~~P~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~ 540 (767)
.+=.+|+++.+.+ .+.+++..-+-.. ++.+ +.|.+ ++..+|+.+. +|++++++|.|+|+.|.||++++.++
T Consensus 23 ~~GneAva~~~~~---ag~~~v~~yPgtP-~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~ 97 (395)
T 1yd7_A 23 IQGDEAIARAAIL---AGCRFYAGYPITP-ASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGP 97 (395)
T ss_dssp EEHHHHHHHHHHH---HTCCEEEECCBTT-TBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred eEHHHHHHHHHHH---cCCCEEEEEECcc-hHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCch
Confidence 3445666666554 3445555443322 3332 34433 4557899987 99999999999999999999999999
Q ss_pred HHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCC---CCChhHHHHhhcCC--CcEEEecCCHHHHHHHHHHHHh---
Q 004227 541 FLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT---HCGAFDVTFMSCLP--NMVVMAPSDEAELMHMVATAAV--- 612 (767)
Q Consensus 541 Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~T---H~~~~Dla~lr~iP--g~~V~~Psd~~E~~~~l~~A~~--- 612 (767)
++.+++|||.+ ++..++|++++....+..+..-++ |++..+. .+...| ++.++.|++++|+.+++..|++
T Consensus 98 G~~~~~d~l~~-aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~ 175 (395)
T 1yd7_A 98 GFSLMQENIGY-AVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSE 175 (395)
T ss_dssp HHHHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999865 468899988887554433221133 3333333 334445 8999999999999999999985
Q ss_pred hCCCCEEEEecCCC---CcccccCCC-----------------CCCCCc--cc--------Cc-----------------
Q 004227 613 IDDRPSCFRFPRGN---GIGAVLPPN-----------------NKGTPL--EI--------GK----------------- 645 (767)
Q Consensus 613 ~~~~P~~irl~r~~---~~~~~~p~~-----------------~~~~~~--~i--------gk----------------- 645 (767)
+.+.|++++++... ...+++|+. +..+.. +. +.
T Consensus 176 ~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~ 255 (395)
T 1yd7_A 176 KYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRP 255 (395)
T ss_dssp HHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC---------------------------------------------
T ss_pred HHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEecccccccccCc
Confidence 45689999987310 000011100 000111 00 00
Q ss_pred -----------------------------eeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHH
Q 004227 646 -----------------------------GRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL 696 (767)
Q Consensus 646 -----------------------------~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~ 696 (767)
.++.++|+|++||++|+++..|++|++.|+++|++++|+++++++|||.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~ 335 (395)
T 1yd7_A 256 RTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFEL 335 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHH
Confidence 012246789999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCEEEEEcCCCCCCHHHHHHHHHHh
Q 004227 697 IRQLANEHEILITVEEGSVGGFGSHVCHFLTL 728 (767)
Q Consensus 697 i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~ 728 (767)
|.++++++++|+|+||+. |||++.|.+.+..
T Consensus 336 i~~~~~~~~~vvvvEe~~-G~l~~~v~~~~~~ 366 (395)
T 1yd7_A 336 IERIAERVDKLYVPEMNL-GQLYHLIKEGANG 366 (395)
T ss_dssp --------------------------------
T ss_pred HHHHHhcCCEEEEEeCCc-hHHHHHHHHHhcC
Confidence 999999999999999998 9999999988865
No 31
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.71 E-value=2.6e-16 Score=195.59 Aligned_cols=220 Identities=14% Similarity=0.080 Sum_probs=164.9
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHHh
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFM 586 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~l 586 (767)
.+.++...+|.++++++.|++++|.|++++|.+..+..+.|.+. .++..++|++++...++..+..-.++.+..|.. .
T Consensus 54 ~~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~-~~ag~~~P~Vi~va~R~g~~~glsi~~~hsd~~-~ 131 (1231)
T 2c42_A 54 TLTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMY-KISGELLPGVFHVTARAIAAHALSIFGDHQDIY-A 131 (1231)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHH-HHHHTTCCCEEEEEECCCCSSSBCCSCCSHHHH-T
T ss_pred ceEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHH-HHhCCCCCEEEEECCCCccCCCCcCCCchhhHH-H
Confidence 37999999999999999999999999999999888888889874 445578998888754443332224455555653 4
Q ss_pred hcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCCC----CcccccCCC--------------------CCCC
Q 004227 587 SCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRGN----GIGAVLPPN--------------------NKGT 639 (767)
Q Consensus 587 r~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~~----~~~~~~p~~--------------------~~~~ 639 (767)
...+|+.|++|++++|+++++..|++ +.+.|++++++.-. ...+++|+. +...
T Consensus 132 ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p~~ 211 (1231)
T 2c42_A 132 ARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPEH 211 (1231)
T ss_dssp TTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCTTS
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCCCC
Confidence 55699999999999999999999865 45779999987521 112222210 0001
Q ss_pred CcccCc------------------------------------------e-eEeecCCcEEEEEechhHHHHHHHHHHHhc
Q 004227 640 PLEIGK------------------------------------------G-RILMEGDRVAILGYGSIVQQCVLAANMLKS 676 (767)
Q Consensus 640 ~~~igk------------------------------------------~-~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~ 676 (767)
++..|. . +.-.+++|++||++|+++..+++|++.|++
T Consensus 212 p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~~ 291 (1231)
T 2c42_A 212 PHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHLAA 291 (1231)
T ss_dssp CCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHHHT
T ss_pred ceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHHHh
Confidence 111121 1 122467899999999999999999999999
Q ss_pred CCCcEEEEEcccCCCCcHHHHHHHh-ccCCEEEEEcCCCCCC-----HHHHHHHHHHh
Q 004227 677 QDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGG-----FGSHVCHFLTL 728 (767)
Q Consensus 677 ~GI~v~VIdl~slkPlD~e~i~~~~-~~~~~vVvvEe~~~GG-----lgs~I~~~l~~ 728 (767)
+|++|+||++++++|||.+.|.+++ ++.++|+|+|++..+| +...|...+..
T Consensus 292 ~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~ 349 (1231)
T 2c42_A 292 KGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVE 349 (1231)
T ss_dssp TTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHH
T ss_pred cCCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhh
Confidence 9999999999999999999999987 6779999999985332 44556555544
No 32
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.52 E-value=1.7e-14 Score=168.51 Aligned_cols=214 Identities=17% Similarity=0.190 Sum_probs=136.8
Q ss_pred CcccHHHHHHHHHhhcCCCCcEEEeCCC-ChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q 004227 184 ANLGVVELTLALHRVFNTPDDKIIWDVG-HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAG 262 (767)
Q Consensus 184 sslg~vel~~aL~~~~~~p~Dr~i~s~G-H~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A 262 (767)
..+....++-.|...+ .++|.+++|.| |+.+++.++..++. . ......+.|++|.++|+|
T Consensus 369 ~~l~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~~--------~----------~~~~~~~~g~~G~~l~~A 429 (603)
T 4feg_A 369 GPLQAYQVLRAVNKIA-EPDAIYSIDVGDINLNANRHLKLTPS--------N----------RHITSNLFATMGVGIPGA 429 (603)
T ss_dssp SBCCHHHHHHHHHHHC-CTTCEEEECSSHHHHHHHHHCCCCTT--------C----------EEECCCSSCCTTCHHHHH
T ss_pred CCcCHHHHHHHHHHhC-CCCCEEEECCchHHHHHHHhceeCCC--------C----------ceecCcccccccchhHHH
Confidence 3466666666665555 46789999999 66677655432210 0 111223568899999999
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhh
Q 004227 263 LGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQA 342 (767)
Q Consensus 263 ~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~ 342 (767)
+|+++|. ++++|||++|||++++| +++|++|+++++|+++||.||+...+
T Consensus 430 ~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~------------------------ 479 (603)
T 4feg_A 430 IAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGF------------------------ 479 (603)
T ss_dssp HHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHH------------------------
T ss_pred hhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHH------------------------
Confidence 9999985 58899999999999855 78899999999999988888863211
Q ss_pred chhHHHHHHHHHHHh-h-hcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhH--cCCC
Q 004227 343 STNFRKLREAAKSIT-K-QIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVK--EMPA 418 (767)
Q Consensus 343 ~~~~~~ir~~~k~~~-~-~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~--~~~~ 418 (767)
++...+... . ..+. .+-..+...++++||+.++ .++ +.+++.+++++++ + .
T Consensus 480 ------~~~~~~~~~~~~~~~~--------------~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~~~--~ 534 (603)
T 4feg_A 480 ------IKDEQEDTNQNDFIGV--------------EFNDIDFSKIADGVHMQAF-RVN--KIEQLPDVFEQAKAIA--Q 534 (603)
T ss_dssp ------HHHHHHHHCSSCCCSS--------------BCCCCCHHHHHHHTTCEEE-EEC--BGGGHHHHHHHHHHHT--T
T ss_pred ------HHHHHHHhcCCCcccC--------------cCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHHhc--C
Confidence 010000000 0 0000 0011344566999999998 454 6788999999988 5 5
Q ss_pred CCcEEEEEEecCCCCCChhhhccccccccccccCccccccCCCCcchhHHHHHH
Q 004227 419 PGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYTQYFA 472 (767)
Q Consensus 419 ~~P~lI~v~T~KG~G~~~ae~~~~~~Hg~~~fd~~~g~~~~~~~~~~s~~~af~ 472 (767)
++|++|++.|.+++.+++ +...+..|+..+++.+..++...+.+...+++.+.
T Consensus 535 ~gP~lIev~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~ 587 (603)
T 4feg_A 535 HEPVLIDAVITGDRPLPA-EKLRLDSAMSSAADIEAFKQRYEAQDLQPLSTYLK 587 (603)
T ss_dssp TSCEEEEEECCCCCCCCT-TSCCCCTTTSCHHHHHHHHHHHTCTTCCCHHHHHH
T ss_pred CCcEEEEEEeCCCCCCCc-ccchhhhhhhhHHHHHHHHhhCCcccCCchHHHHH
Confidence 899999999987776664 43445667665555433222222223345555543
No 33
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.45 E-value=1.2e-13 Score=128.03 Aligned_cols=76 Identities=14% Similarity=0.269 Sum_probs=72.2
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 651 EGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 651 eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
+|+|++||+||+++..|++|++.|+++|++++|+++++++|||.+.+.+++++++.++|+|++..||+++.|...+
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~ 87 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYT 87 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHH
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHc
Confidence 6789999999999999999999999999999999999999999999999999999999999998899999987654
No 34
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.37 E-value=2.9e-12 Score=148.31 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=120.0
Q ss_pred cccHHHHHHHHHhhcCCCCcEEEeCCCChH-HHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHH
Q 004227 185 NLGVVELTLALHRVFNTPDDKIIWDVGHQA-YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (767)
Q Consensus 185 slg~vel~~aL~~~~~~p~Dr~i~s~GH~~-y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~ 263 (767)
.+....++..|...+ .+++.++.|.|+.. +++.++..+. |. ......|.|++|+++|+|+
T Consensus 369 ~~~~~~~~~~l~~~l-~~~~iv~~d~G~~~~~~~~~~~~~~---------------~~---~~~~~~g~g~~G~~l~~Ai 429 (563)
T 2uz1_A 369 ALHPFHASQVIAKHV-DAGVTVVADGALTYLWLSEVMSRVK---------------PG---GFLCHGYLGSMGVGFGTAL 429 (563)
T ss_dssp SCCHHHHHHHHHTTC-STTEEEEECSSHHHHHHHHHHTTSC---------------CS---EEECCCTTCCTTTHHHHHH
T ss_pred CcCHHHHHHHHHHhC-CCCcEEEEcCchHHHHHHHhccccC---------------CC---eEECCCCCccccChHHHHH
Confidence 466666666676655 35678889999744 5665544321 11 1233457799999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhc
Q 004227 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAS 343 (767)
Q Consensus 264 G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~ 343 (767)
|+|+|.| +++++|||++|||+++.+ +++|++|+++++|+++||.||+...+
T Consensus 430 Gaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~------------------------- 480 (563)
T 2uz1_A 430 GAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGA------------------------- 480 (563)
T ss_dssp HHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHH-------------------------
T ss_pred HHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchH-------------------------
Confidence 9999986 568999999999999854 68999999999998777766653211
Q ss_pred hhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEE
Q 004227 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVL 423 (767)
Q Consensus 344 ~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~l 423 (767)
++..-+.. .+.. + ....++-..+...++++||+.++. + ++.+++.++++++.+ .++|++
T Consensus 481 -----~~~~~~~~---~~~~------~--~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~~l~~al~~a~~--~~gp~l 539 (563)
T 2uz1_A 481 -----TLHFQQLA---VGPN------R--VTGTRLENGSYHGVAAAFGADGYH-V--DSVESFSAALAQALA--HNRPAC 539 (563)
T ss_dssp -----HHHHHHHH---TCTT------C--CCSCBCCCCCHHHHHHHTTCEEEE-E--CSHHHHHHHHHHHHH--SSSCEE
T ss_pred -----HHHHHHHh---cCCC------c--ccCCcCCCCCHHHHHHHcCCeEEE-e--CCHHHHHHHHHHHHH--CCCCEE
Confidence 00000000 0000 0 000001123556679999999884 4 579999999999887 579999
Q ss_pred EEEEecCC
Q 004227 424 IHVVTEKG 431 (767)
Q Consensus 424 I~v~T~KG 431 (767)
|++.|.+.
T Consensus 540 iev~~~~~ 547 (563)
T 2uz1_A 540 INVAVALD 547 (563)
T ss_dssp EEEECCSC
T ss_pred EEEEeccc
Confidence 99999843
No 35
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.28 E-value=3e-11 Score=140.06 Aligned_cols=175 Identities=15% Similarity=0.232 Sum_probs=117.1
Q ss_pred ccHHHHHHHHHhhcCCCCcEEEeCCC-ChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q 004227 186 LGVVELTLALHRVFNTPDDKIIWDVG-HQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLG 264 (767)
Q Consensus 186 lg~vel~~aL~~~~~~p~Dr~i~s~G-H~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~G 264 (767)
+....++..|...+ .+++.++.|.| |+.+...++.. + .|. ......|.|++|.++|+|+|
T Consensus 371 l~~~~v~~~l~~~l-~~~~iv~~d~G~~~~~~~~~~~~--------~-------~~~---~~~~~~g~g~mG~~l~~AiG 431 (566)
T 1ozh_A 371 LHPLRIVRAMQDIV-NSDVTLTVDMGSFHIWIARYLYT--------F-------RAR---QVMISNGQQTMGVALPWAIG 431 (566)
T ss_dssp BCHHHHHHHHHHHC-CTTEEEEECSSHHHHHHHHTGGG--------C-------CCS---EEECCCTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEEcCcHHHHHHHHhccc--------C-------CCC---eEEeCCCcccccchHHHHHH
Confidence 66677777776666 34567788888 33333322211 0 111 12223477999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhch
Q 004227 265 MAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAST 344 (767)
Q Consensus 265 ~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~ 344 (767)
+|+|. ++++|||++|||+++. .+++|++|+++++|+++||.||+...+ .+.+.+..
T Consensus 432 aala~----~~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~---------------~~~~~~~~--- 487 (566)
T 1ozh_A 432 AWLVN----PERKVVSVSGDGGFLQ--SSMELETAVRLKANVLHLIWVDNGYNM---------------VAIQEEKK--- 487 (566)
T ss_dssp HHHHS----TTSEEEEEEEHHHHHH--HTTHHHHHHHHTCCEEEEEEECSBCHH---------------HHHHHHHH---
T ss_pred HHHhC----CCCCEEEEEcChHHhc--cHHHHHHHHHhCCCcEEEEEECCchhH---------------HHHHHHHh---
Confidence 99996 4789999999999985 578899999999998888877763211 00000000
Q ss_pred hHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEE
Q 004227 345 NFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLI 424 (767)
Q Consensus 345 ~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI 424 (767)
| + ..+..++-..+...++++||+.++ .++ +.+++.++++++.+ .++|++|
T Consensus 488 -~--------------~----------~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~--~~gp~li 537 (566)
T 1ozh_A 488 -Y--------------Q----------RLSGVEFGPMDFKAYAESFGAKGF-AVE--SAEALEPTLRAAMD--VDGPAVV 537 (566)
T ss_dssp -H--------------S----------SCCSCBCCCCCHHHHHHTTTSEEE-ECC--SGGGHHHHHHHHHH--SSSCEEE
T ss_pred -c--------------C----------CCccCcCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHh--CCCCEEE
Confidence 0 0 000011122455677999999987 454 68899999999886 5799999
Q ss_pred EEEecCCCC
Q 004227 425 HVVTEKGKG 433 (767)
Q Consensus 425 ~v~T~KG~G 433 (767)
++.|.+...
T Consensus 538 ev~~~~~~~ 546 (566)
T 1ozh_A 538 AIPVDYRDN 546 (566)
T ss_dssp EEEBCCTTH
T ss_pred EEEeCCCcC
Confidence 999998764
No 36
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.22 E-value=7.1e-12 Score=148.17 Aligned_cols=130 Identities=20% Similarity=0.307 Sum_probs=96.6
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|.+|.++|+|+|+|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+...+
T Consensus 510 g~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~--~~~~eL~ta~~~~l~v~ivV~NN~~~g~----------- 572 (677)
T 1t9b_A 510 GGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFN--MTLTELSSAVQAGTPVKILILNNEEQGM----------- 572 (677)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHHTCCCEEEEEECSSCHH-----------
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHh--ccHHHHHHHHHhCCCeEEEEEeCCCchh-----------
Confidence 35689999999999999995 689999999999998 5678899999999998777766653211
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh-----hccCCChhhhHhhcCCeEeeccCCCCHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYAR-----GLISASGSTFFEELGLYYIGPVDGHNVE 404 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r-----~~~~~~~~~lfea~G~~~i~~vDGhdi~ 404 (767)
++.. ++. .+.. +.-..+...++++||+.++. + ++.+
T Consensus 573 -------------------~~~~------------~~~-----~~~~~~~~~~~~~~d~~~la~a~G~~~~~-v--~~~~ 613 (677)
T 1t9b_A 573 -------------------VTQW------------QSL-----FYEHRYSHTHQLNPDFIKLAEAMGLKGLR-V--KKQE 613 (677)
T ss_dssp -------------------HHHH------------HHH-----HSTTCCCSCCCCCCCHHHHHHHTTCEEEE-E--CSHH
T ss_pred -------------------hhhh------------hhh-----hcCCCcccCcCCCCCHHHHHHHcCCeEEE-E--CCHH
Confidence 0000 000 0000 01123556779999999884 4 5799
Q ss_pred HHHHHHHHhHcCCCCCcEEEEEEecCCCCCChh
Q 004227 405 DLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPA 437 (767)
Q Consensus 405 ~l~~al~~a~~~~~~~P~lI~v~T~KG~G~~~a 437 (767)
+|.++++++.+ .++|++|++.|.++....++
T Consensus 614 el~~al~~a~~--~~gp~lIev~~~~~~~~~p~ 644 (677)
T 1t9b_A 614 ELDAKLKEFVS--TKGPVLLEVEVDKKVPVLPM 644 (677)
T ss_dssp HHHHHHHHHHH--CSSCEEEEEEBCSSCCCSSB
T ss_pred HHHHHHHHHHH--CCCcEEEEEEecCCcccCCc
Confidence 99999999887 57899999999998865443
No 37
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.22 E-value=9.4e-12 Score=144.90 Aligned_cols=142 Identities=20% Similarity=0.273 Sum_probs=95.4
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|++|+++|+|+|+|+|. ++++|||++|||+++. .+++|++|+++++|+++||.||+...+
T Consensus 423 g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~----------- 485 (590)
T 1ybh_A 423 GGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIM--NVQELATIRVENLPVKVLLLNNQHLGM----------- 485 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHH--TTTHHHHHHHTTCCEEEEEEECSBCHH-----------
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEccchhhc--cHHHHHHHHHhCCCcEEEEEECCcchH-----------
Confidence 35699999999999999996 4789999999999985 578999999999998777766653211
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
.+.+.+......+ ....++.+. ....-..+...++++||+.++ .+ ++.+++.++
T Consensus 486 ----~~~~~~~~~~~~~---------~~~~~~~p~----------~~~~~~~d~~~~a~a~G~~~~-~v--~~~~el~~a 539 (590)
T 1ybh_A 486 ----VMQWEDRFYKANR---------AHTFLGDPA----------QEDEIFPNMLLFAAACGIPAA-RV--TKKADLREA 539 (590)
T ss_dssp ----HHHHHHHHSTTCC---------CSCBCSCGG----------GTTSCSSCHHHHHHHTTCCEE-EE--CBHHHHHHH
T ss_pred ----HHHHHHHhcCCcc---------ccccccccc----------cccCCCCCHHHHHHHcCCeEE-Ee--CCHHHHHHH
Confidence 0000000000000 000000000 000001345567999999988 45 479999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCCCCCh
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGKGYPP 436 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~G~~~ 436 (767)
++++.+ .++|++|++.|.++....+
T Consensus 540 l~~a~~--~~gp~liev~~~~~~~~~p 564 (590)
T 1ybh_A 540 IQTMLD--TPGPYLLDVICPHQEHVLP 564 (590)
T ss_dssp HHHHHH--SSSCEEEEEECCTTCCCCS
T ss_pred HHHHHh--CCCCEEEEEEecCCcccCC
Confidence 999987 4799999999999887544
No 38
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.19 E-value=1.8e-11 Score=142.11 Aligned_cols=127 Identities=18% Similarity=0.234 Sum_probs=92.3
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
-|.|++|+++|+|+|+|+|. ++++|||++|||+++. .+++|++|+++++|+++||.||+...+
T Consensus 433 ~g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~--~~~~L~~a~~~~l~~~ivv~NN~~~~~----------- 495 (573)
T 2iht_A 433 AGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHS--NSSDLETIARLNLPIVTVVVNNDTNGL----------- 495 (573)
T ss_dssp SSSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHH--TGGGHHHHHHHTCCCEEEEEECSBCHH-----------
T ss_pred CCCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHh--HHHHHHHHHHhCCCeEEEEEECCcchh-----------
Confidence 36799999999999999996 4789999999999985 578999999999898777766653211
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH--hhccCCChhhhHhhcCCeEeeccCCCCHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYA--RGLISASGSTFFEELGLYYIGPVDGHNVEDLV 407 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~--r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~ 407 (767)
.+.+.... | +. ... ..+-..+...++++||+.++. + ++.+++.
T Consensus 496 ----~~~~~~~~----~--------------~~----------~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~~l~ 540 (573)
T 2iht_A 496 ----IELYQNIG----H--------------HR----------SHDPAVKFGGVDFVALAEANGVDATR-A--TNREELL 540 (573)
T ss_dssp ----HHHHHHHH----H--------------SS----------CCGGGTBCCCCCHHHHHHHTTCEEEE-C--CSHHHHH
T ss_pred ----hHHHHHHh----c--------------CC----------CcCccccCCCCCHHHHHHHcCCeEEE-e--CCHHHHH
Confidence 00000000 0 00 000 111124556789999999884 5 5789999
Q ss_pred HHHHHhHcCCCCCcEEEEEEecC
Q 004227 408 TIFQRVKEMPAPGPVLIHVVTEK 430 (767)
Q Consensus 408 ~al~~a~~~~~~~P~lI~v~T~K 430 (767)
++++++.+ .++|++|++.|.+
T Consensus 541 ~al~~a~~--~~gp~liev~~~~ 561 (573)
T 2iht_A 541 AALRKGAE--LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHHT--SSSCEEEEEEBCC
T ss_pred HHHHHHHh--CCCCEEEEEECCC
Confidence 99999986 5799999999988
No 39
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.17 E-value=1.8e-11 Score=140.58 Aligned_cols=127 Identities=24% Similarity=0.310 Sum_probs=90.7
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
| |++|+++|+|+|+|+|. ++++|||++|||+++.+ +|+|++|+++++|+++||.||+...+
T Consensus 400 g-g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~------------ 460 (528)
T 1q6z_A 400 A-GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGA------------ 460 (528)
T ss_dssp T-CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHH------------
T ss_pred C-ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchH------------
Confidence 6 99999999999999996 47889999999999965 89999999999998888877763111
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
.+.+.+....+ +..+ .++-..+...++++||+.++ .++ +.+++.+++
T Consensus 461 ---~~~~~~~~~~~-------------~~~~--------------~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al 507 (528)
T 1q6z_A 461 ---LRWFAGVLEAE-------------NVPG--------------LDVPGIDFRALAKGYGVQAL-KAD--NLEQLKGSL 507 (528)
T ss_dssp ---HHHHHHHHTCC-------------SCCS--------------CBCCCCCHHHHHHHHTCEEE-EES--SHHHHHHHH
T ss_pred ---hHHHHHHhcCC-------------Cccc--------------CCCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHH
Confidence 00000000000 0000 00112345567999999988 565 568999999
Q ss_pred HHhHcCCCCCcEEEEEEecCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG 431 (767)
+++++ .++|++|++.|.+.
T Consensus 508 ~~a~~--~~gp~liev~~~~~ 526 (528)
T 1q6z_A 508 QEALS--AKGPVLIEVSTVSP 526 (528)
T ss_dssp HHHHT--CSSCEEEEEEBCC-
T ss_pred HHHHH--CCCcEEEEEEecCC
Confidence 99886 57999999999753
No 40
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.16 E-value=2e-11 Score=141.28 Aligned_cols=131 Identities=16% Similarity=0.179 Sum_probs=95.4
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|.+|+++|+|+|+|+|.+.++++++|||++|||+++ +.+++|++|+++++|+++||.||+...+-+.. .+...
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~-~~~~~- 485 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQ--LTVQEISTMIRWGLKPYLFVLNNDGYTIQKLI-HGPKA- 485 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSCHHHHHH-SCTTC-
T ss_pred cchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhh--ccHHHHHHHHHcCCCcEEEEEECCcchhhhhh-hCCCC-
Confidence 467999999999999999999888899999999999998 56899999999998877777666532110000 00000
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCe---EeeccCCCCHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY---YIGPVDGHNVEDL 406 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~---~i~~vDGhdi~~l 406 (767)
.+ .++-..+...++++||+. ++ .++ +.+++
T Consensus 486 -------------------------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~-~v~--~~~el 518 (563)
T 2vk8_A 486 -------------------------------------------QY-NEIQGWDHLSLLPTFGAKDYETH-RVA--TTGEW 518 (563)
T ss_dssp -------------------------------------------GG-GCCCCCCGGGHHHHTTCSSEEEE-EEC--BHHHH
T ss_pred -------------------------------------------Cc-ccCCCCCHHHHHHHhCCCCCcEE-Eec--CHHHH
Confidence 00 011124566789999998 65 454 68999
Q ss_pred HHHHH-HhHcCCCCCcEEEEEEecCCC
Q 004227 407 VTIFQ-RVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 407 ~~al~-~a~~~~~~~P~lI~v~T~KG~ 432 (767)
.++++ ++.+. .++|++|+++|.+..
T Consensus 519 ~~al~~~a~~~-~~~p~liev~~~~~~ 544 (563)
T 2vk8_A 519 DKLTQDKSFND-NSKIRMIEVMLPVFD 544 (563)
T ss_dssp HHHHTCTTTTS-CSSEEEEEEECCTTC
T ss_pred HHHHHHHHHhC-CCCcEEEEEEeCccc
Confidence 99998 77652 347999999998654
No 41
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.14 E-value=4e-11 Score=139.63 Aligned_cols=180 Identities=17% Similarity=0.236 Sum_probs=116.6
Q ss_pred cccHHHHHHHHHhhcCCCCcEEEeCCCChH-HHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHH
Q 004227 185 NLGVVELTLALHRVFNTPDDKIIWDVGHQA-YVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (767)
Q Consensus 185 slg~vel~~aL~~~~~~p~Dr~i~s~GH~~-y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~ 263 (767)
.+....++..|...+ .+++.++.+.|-.. +...++. ++ .|. ......|.|++|.++|+|+
T Consensus 374 ~l~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~--------~~-------~~~---~~~~~~g~g~mG~~l~~Ai 434 (589)
T 2pgn_A 374 PASMFRAMAEVRKVQ-RPEDIIVTDIGNHTLPMFGGAI--------LQ-------RPR---RLVTSMAEGILGCGFPMAL 434 (589)
T ss_dssp SCCHHHHHHHHHHTC-CTTCEEEECSSTTHHHHHHHCC--------CS-------STT---CEESCTTTCCTTCHHHHHH
T ss_pred CcCHHHHHHHHHHhC-CCCCEEEEcCchHHHHHHHhcc--------cC-------CCC---cEECCCCcchhhhHHHHHH
Confidence 356666666665555 34567778877433 2221110 00 011 1122346799999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhc
Q 004227 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAS 343 (767)
Q Consensus 264 G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~ 343 (767)
|+|+|. ++++|||++|||+++. .+|+|++|+++++|+++||.||+...+
T Consensus 435 Gaala~----~~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~------------------------- 483 (589)
T 2pgn_A 435 GAQLAE----PNSRVFLGTGDGALYY--HFNEFRVAVEHKLPVITMVFTNESYGA------------------------- 483 (589)
T ss_dssp HHHHHC----TTSCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSBCHH-------------------------
T ss_pred HHHHhC----CCCcEEEEEeeHHHHh--hHHHHHHHHHhCCCeEEEEEECCCccc-------------------------
Confidence 999996 4789999999999985 479999999999998888777763211
Q ss_pred hhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEE
Q 004227 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVL 423 (767)
Q Consensus 344 ~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~l 423 (767)
++.. +..... ..+...+-..+...++++||+.++ .++ +.+++.++++++.+ .++|++
T Consensus 484 -----~~~~------------~~~~~~-~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~--~~gp~l 540 (589)
T 2pgn_A 484 -----NWTL------------MNHQFG-QNNWTEFMNPDWVGIAKAFGAYGE-SVR--ETGDIAGALQRAID--SGKPAL 540 (589)
T ss_dssp -----HHHH------------HHHHHS-SCCSCBCCCCCHHHHHHHHTCEEE-ECT--TTCCHHHHHHHHHH--HCSCEE
T ss_pred -----chHH------------HHhhcC-CCccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHh--CCCCEE
Confidence 0000 000000 000011113456678999999987 454 56788888988876 478999
Q ss_pred EEEEecCCCCCChh
Q 004227 424 IHVVTEKGKGYPPA 437 (767)
Q Consensus 424 I~v~T~KG~G~~~a 437 (767)
|++.|.++.++.+.
T Consensus 541 iev~~~~~~~~~~~ 554 (589)
T 2pgn_A 541 IEIPVSKTQGLASD 554 (589)
T ss_dssp EEEECCSSSSTTTC
T ss_pred EEEEecCCCCcCcc
Confidence 99999998877653
No 42
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.13 E-value=6.3e-11 Score=136.80 Aligned_cols=178 Identities=17% Similarity=0.221 Sum_probs=113.0
Q ss_pred CcccHHHHHHHHHhhcCCCCcEEEeCCCChHHHHHHHhCChHHhHHHHhcCCCCCCCCCCCCCCCCCCCcccchhHHHHH
Q 004227 184 ANLGVVELTLALHRVFNTPDDKIIWDVGHQAYVHKILTGRRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGL 263 (767)
Q Consensus 184 sslg~vel~~aL~~~~~~p~Dr~i~s~GH~~y~~~~l~G~~~~l~tlr~~ggl~G~p~~~es~~~~~g~G~~G~~ls~A~ 263 (767)
..+....++..|...+ .+++.++.|.|-.. .. ..+... .. .|. ......+.|++|.++|+|+
T Consensus 355 ~~~~~~~~~~~l~~~l-~~~~ivv~d~G~~~--~~----------~~~~~~-~~-~~~---~~~~~~~~g~mG~~l~~Ai 416 (549)
T 3eya_A 355 KAIHPQYLAQQISHFA-ADDAIFTCDVGTPT--VW----------AARYLK-MN-GKR---RLLGSFNHGSMANAMPQAL 416 (549)
T ss_dssp SCBCHHHHHHHHHHHS-CTTCEEEECTTHHH--HH----------HHHHCC-CC-SSC---EEECCTTTCCTTCHHHHHH
T ss_pred CCcCHHHHHHHHHhhC-CCCCEEEEcCcHHH--HH----------HHHhCc-cC-CCC---cEEeCCCCchhhhHHHHHH
Confidence 3466666666665555 45678889888222 11 001110 00 011 1122236689999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhc
Q 004227 264 GMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQAS 343 (767)
Q Consensus 264 G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~ 343 (767)
|+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+....-+..+. .
T Consensus 417 Gaala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~------------------~ 472 (549)
T 3eya_A 417 GAQATE----PERQVVAMCGDGGFS--MLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMK------------------A 472 (549)
T ss_dssp HHHHHS----TTSCEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCCCC------------------------
T ss_pred HHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHH------------------h
Confidence 999986 578999999999997 5578999999999887777766652111000000 0
Q ss_pred hhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEE
Q 004227 344 TNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVL 423 (767)
Q Consensus 344 ~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~l 423 (767)
.........+-..+...++++||+.++. + ++.+++.++++++++ .++|++
T Consensus 473 -------------------------~~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~~l~~al~~a~~--~~gp~l 522 (549)
T 3eya_A 473 -------------------------GGYLTDGTELHDTNFARIAEACGITGIR-V--EKASEVDEALQRAFS--IDGPVL 522 (549)
T ss_dssp -------------------------------CCBCCCCCHHHHHHHTTSEEEE-E--CSGGGHHHHHHHHHH--SSSCEE
T ss_pred -------------------------cCCCCcCCcCCCCCHHHHHHHcCCcEEE-e--CCHHHHHHHHHHHHh--CCCCEE
Confidence 0000011112224556779999999874 4 578899999999887 579999
Q ss_pred EEEEecCCCC
Q 004227 424 IHVVTEKGKG 433 (767)
Q Consensus 424 I~v~T~KG~G 433 (767)
|++.|.+..-
T Consensus 523 iev~~~~~~~ 532 (549)
T 3eya_A 523 VDVVVAKEEL 532 (549)
T ss_dssp EEEEBCCCCS
T ss_pred EEEEeccccc
Confidence 9999987654
No 43
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.13 E-value=8e-11 Score=137.12 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=92.3
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCC-CC
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGP-AT 328 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~-~~ 328 (767)
.|.|.+|+++|+|+|+|+|. ++++|||++|||+++.+ +++|++|+++++|+++||.||+...+-...+... -.
T Consensus 410 ~~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~ 483 (590)
T 1v5e_A 410 PLFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKN 483 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCS
T ss_pred CCCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCC
Confidence 46799999999999999995 57899999999999854 7999999999989887776665322211111000 00
Q ss_pred cchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHH
Q 004227 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVT 408 (767)
Q Consensus 329 ~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~ 408 (767)
.. + .++-..+...++++||+.++ .++ +.+++.+
T Consensus 484 ~~------------------------------~--------------~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 516 (590)
T 1v5e_A 484 LF------------------------------G--------------VDFTDVDYAKIAEAQGAKGF-TVS--RIEDMDR 516 (590)
T ss_dssp CC------------------------------C--------------CCCCCCCHHHHHHHTTSEEE-EEC--BHHHHHH
T ss_pred Cc------------------------------c--------------ccCCCCCHHHHHHHcCCEEE-EEC--CHHHHHH
Confidence 00 0 00011334556999999987 454 7899999
Q ss_pred HHHHhHcC-CCCCcEEEEEEecCCC
Q 004227 409 IFQRVKEM-PAPGPVLIHVVTEKGK 432 (767)
Q Consensus 409 al~~a~~~-~~~~P~lI~v~T~KG~ 432 (767)
+++++.+. ..++|++|++.|.++.
T Consensus 517 al~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 517 VMAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred HHHHHHHhcCCCCCEEEEEEecccc
Confidence 99988752 0178999999999876
No 44
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.12 E-value=5.9e-11 Score=138.85 Aligned_cols=139 Identities=23% Similarity=0.258 Sum_probs=91.8
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|++|+++|+|+|+|+|. ++++|||++|||+++. .+++|++|+++++|+++||.||+...+-+
T Consensus 439 g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~~~--------- 503 (616)
T 2pan_A 439 GQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQF--LIEELAVGAQFNIPYIHVLVNNAYLGLIR--------- 503 (616)
T ss_dssp TTTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHH--TGGGHHHHHHTTCCCEEEEEECSBCHHHH---------
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhC--CHHHHHHHHHhCCCeEEEEEECCcchHHH---------
Confidence 35699999999999999996 5789999999999985 57899999999999877776665322100
Q ss_pred chhhhHHHHHhhhch-----hHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHH
Q 004227 330 VGALSSALSKLQAST-----NFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVE 404 (767)
Q Consensus 330 vg~ls~~L~~l~~~~-----~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~ 404 (767)
.+.+..... .|. +..... ......+...++++||+.++. + ++.+
T Consensus 504 ------~~~~~~~~~~~~~~~~~-------------~~~~~~---------~~~~~~d~~~~a~a~G~~~~~-v--~~~~ 552 (616)
T 2pan_A 504 ------QSQRAFDMDYCVQLAFE-------------NINSSE---------VNGYGVDHVKVAEGLGCKAIR-V--FKPE 552 (616)
T ss_dssp ------HHGGGGTCCCSCBCCCC-------------CTTCGG---------GTTCCCCHHHHHHHTTCEEEE-E--CSGG
T ss_pred ------HHHHHhcCCcccccccc-------------cccccc---------CCCCCCCHHHHHHHcCCeEEE-E--CCHH
Confidence 000000000 000 000000 000012445679999999884 5 4678
Q ss_pred HHHHHHHHhHcC--CCCCcEEEEEEecCCCCC
Q 004227 405 DLVTIFQRVKEM--PAPGPVLIHVVTEKGKGY 434 (767)
Q Consensus 405 ~l~~al~~a~~~--~~~~P~lI~v~T~KG~G~ 434 (767)
+|.++++++.+. ..++|++|++.|.++.-.
T Consensus 553 el~~al~~a~~~~~~~~gp~lIev~~~~~~~~ 584 (616)
T 2pan_A 553 DIAPAFEQAKALMAQYRVPVVVEVILERVTNI 584 (616)
T ss_dssp GHHHHHHHHHHHHHHHCSCEEEEEEBCSCCCC
T ss_pred HHHHHHHHHHhhcccCCCcEEEEEEecccccC
Confidence 888888877640 136899999999998743
No 45
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.10 E-value=5.3e-11 Score=137.30 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=91.9
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
.+.|++|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+...+.... .|...
T Consensus 405 ~~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~-~~~~~- 476 (552)
T 1ovm_A 405 PLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAI-HGAEQ- 476 (552)
T ss_dssp TTTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCHHHHHH-SCTTC-
T ss_pred hhhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCeEEEee-ccCCC-
Confidence 46799999999999999995 478999999999998 66899999999998877777666532210000 00000
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCC----eEeeccCCCCHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL----YYIGPVDGHNVED 405 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~----~~i~~vDGhdi~~ 405 (767)
.+ .++-..+...++++||+ .+. .+ ++.++
T Consensus 477 -------------------------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~~-~v--~~~~~ 509 (552)
T 1ovm_A 477 -------------------------------------------RY-NDIALWNWTHIPQALSLDPQSECW-RV--SEAEQ 509 (552)
T ss_dssp -------------------------------------------GG-GCCCCCCGGGSTTTSCSSCCEEEE-EE--CBHHH
T ss_pred -------------------------------------------Cc-ccCCCCCHHHHHHHhCCCcCCCEE-Ee--CCHHH
Confidence 00 11112455677999999 765 34 47899
Q ss_pred HHHHHHHhHcCCCCCcEEEEEEecCCC
Q 004227 406 LVTIFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 406 l~~al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+.++++++++ .++|++|++.|.+..
T Consensus 510 l~~al~~a~~--~~gp~liev~~~~~~ 534 (552)
T 1ovm_A 510 LADVLEKVAH--HERLSLIEVMLPKAD 534 (552)
T ss_dssp HHHHHHHHTT--CSSEEEEEEECCTTC
T ss_pred HHHHHHHHHh--CCCCEEEEEEcCccc
Confidence 9999998876 578999999998654
No 46
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.09 E-value=8.9e-11 Score=135.97 Aligned_cols=126 Identities=17% Similarity=0.283 Sum_probs=92.1
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+...+-...+++
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~----- 475 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQ--LTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDG----- 475 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCC-----
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCcceEEEeeccC-----
Confidence 5688999999999999985 578999999999998 46788999999998877666666432210000000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCC-----eEeeccCCCCHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL-----YYIGPVDGHNVED 405 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~-----~~i~~vDGhdi~~ 405 (767)
.| .+.-..+...++++||+ .++. + ++.++
T Consensus 476 --------------~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~-v--~~~~e 509 (566)
T 2vbi_A 476 --------------PY-----------------------------NYIKNWDYAGLMEVFNAGEGHGLGLK-A--TTPKE 509 (566)
T ss_dssp --------------GG-----------------------------GCCCCCCTTTHHHHHHTTTCCCEEEE-E--CSHHH
T ss_pred --------------Cc-----------------------------cCCCCCCHHHHHHHcCCCCCCccEEE-e--CCHHH
Confidence 00 01112355677999999 8874 5 47899
Q ss_pred HHHHHHHhHcCCCCCcEEEEEEecCCCCC
Q 004227 406 LVTIFQRVKEMPAPGPVLIHVVTEKGKGY 434 (767)
Q Consensus 406 l~~al~~a~~~~~~~P~lI~v~T~KG~G~ 434 (767)
+.++++++.+. .++|++|++.|.+..-.
T Consensus 510 l~~al~~a~~~-~~gp~liev~~~~~~~~ 537 (566)
T 2vbi_A 510 LTEAIARAKAN-TRGPTLIECQIDRTDCT 537 (566)
T ss_dssp HHHHHHHHHHC-CSSCEEEEEECCTTCCC
T ss_pred HHHHHHHHHhc-CCCcEEEEEEeCcccCc
Confidence 99999998862 17899999999887643
No 47
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.05 E-value=1.3e-10 Score=134.58 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=90.6
Q ss_pred CCCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCc
Q 004227 250 FGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATP 329 (767)
Q Consensus 250 ~g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~ 329 (767)
-+.|.+|+++|+|+|+|+|. ++++|||++|||+++. .+++|++|.++++|+++||.||+...+-... .+...
T Consensus 422 ~~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~-~~~~~- 493 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQL--TVQELGLSIREKLNPICFIINNDGYTVEREI-HGPTQ- 493 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHH-SCTTC-
T ss_pred ccchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhc--CHHHHHHHHHcCCCCEEEEEECCchHHHHHH-hccCC-
Confidence 36789999999999999995 5789999999999985 6788999999998877777666532110000 00000
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCe-----EeeccCCCCHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLY-----YIGPVDGHNVE 404 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~-----~i~~vDGhdi~ 404 (767)
.+ .++-..+...++++||+. +. .+ ++.+
T Consensus 494 -------------------------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~~~-~v--~~~~ 526 (570)
T 2vbf_A 494 -------------------------------------------SY-NDIPMWNYSKLPETFGATEDRVVSK-IV--RTEN 526 (570)
T ss_dssp -------------------------------------------GG-GCCCCCCGGGHHHHTTCCTTTEEEE-EE--CBHH
T ss_pred -------------------------------------------Cc-cCCCCCCHHHHHHHcCCCcCCcceE-Ee--cCHH
Confidence 00 111224566789999997 55 34 5799
Q ss_pred HHHHHHHHh-HcCCCCCcEEEEEEecCCC
Q 004227 405 DLVTIFQRV-KEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 405 ~l~~al~~a-~~~~~~~P~lI~v~T~KG~ 432 (767)
++.++++++ .+ .++|++|++.|.+..
T Consensus 527 el~~al~~a~~~--~~~p~liev~~~~~~ 553 (570)
T 2vbf_A 527 EFVSVMKEAQAD--VNRMYWIELVLEKED 553 (570)
T ss_dssp HHHHHHHHHHHC--TTSEEEEEEECCTTC
T ss_pred HHHHHHHHHHhc--CCCcEEEEEEcCccc
Confidence 999999984 54 578999999998654
No 48
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.04 E-value=1.6e-10 Score=133.94 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=91.0
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+...+-...+++
T Consensus 411 ~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~----- 479 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQ--LTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDG----- 479 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCC-----
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHh--ccHHHHHHHHHcCCCcEEEEEECCcceEeeeeccC-----
Confidence 5688999999999999996 588999999999998 56888999999998887666555422210000000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCC---------eEeeccCCC
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGL---------YYIGPVDGH 401 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~---------~~i~~vDGh 401 (767)
.| .++-..+...++++||+ .+. .+ +
T Consensus 480 --------------~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~~~~-~v--~ 513 (568)
T 2wvg_A 480 --------------PY-----------------------------NNIKNWDYAGLMEVFNGNGGYDSGAGKGL-KA--K 513 (568)
T ss_dssp --------------GG-----------------------------GCCCCCCHHHHHHHHHCTTSSSCCCCEEE-EE--S
T ss_pred --------------CC-----------------------------cCCCCCCHHHHHHHhCCCcccccCCcceE-Ee--C
Confidence 00 00111234456899999 766 45 5
Q ss_pred CHHHHHHHHHHhHcCCCCCcEEEEEEecCCCCC
Q 004227 402 NVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGY 434 (767)
Q Consensus 402 di~~l~~al~~a~~~~~~~P~lI~v~T~KG~G~ 434 (767)
+.+++.++++++.+. .++|++|++.|.++.-.
T Consensus 514 ~~~el~~al~~a~~~-~~gp~liev~~~~~~~~ 545 (568)
T 2wvg_A 514 TGGELAEAIKVALAN-TDGPTLIECFIGREDCT 545 (568)
T ss_dssp BHHHHHHHHHHHHHC-CSSCEEEEEECCTTCCC
T ss_pred CHHHHHHHHHHHHhc-CCCcEEEEEEcCccccC
Confidence 789999999998863 27899999999887643
No 49
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.03 E-value=2.9e-10 Score=131.70 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=91.9
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCC-CccccccCCCCCCc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQ-VSLPTATLDGPATP 329 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~-~S~pt~~~dg~~~~ 329 (767)
+.|++|+++|+|+|+|+| ++++|||++|||+++ +.+++|++|.++++|+++||.||+. .... ..+.....
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~-~~~~~~~~- 494 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGN-EADPQPGV- 494 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSC-CCCSBTTB-
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHH-HHHhhcCC-
Confidence 468899999999999998 478999999999998 6789999999999998888877763 1211 11100000
Q ss_pred chhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHH
Q 004227 330 VGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTI 409 (767)
Q Consensus 330 vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~a 409 (767)
... -..-..+...++++||+.++. + ++.+++.++
T Consensus 495 ~~~-------------------------------------------~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~a 528 (568)
T 2c31_A 495 ISC-------------------------------------------TRLTRGRYDMMMEAFGGKGYV-A--NTPAELKAA 528 (568)
T ss_dssp CCT-------------------------------------------TBCCCCCHHHHHHTTTCEEEE-E--SSHHHHHHH
T ss_pred ccc-------------------------------------------CcCCCCCHHHHHHHcCCeEEE-e--CCHHHHHHH
Confidence 000 000013445569999999874 4 579999999
Q ss_pred HHHhHcCCCCCcEEEEEEecCCCC
Q 004227 410 FQRVKEMPAPGPVLIHVVTEKGKG 433 (767)
Q Consensus 410 l~~a~~~~~~~P~lI~v~T~KG~G 433 (767)
++++.+ .++|++|++.|.+...
T Consensus 529 l~~a~~--~~~p~liev~~~~~~~ 550 (568)
T 2c31_A 529 LEEAVA--SGKPCLINAMIDPDAG 550 (568)
T ss_dssp HHHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHHh--CCCCEEEEEEeccccC
Confidence 999876 4789999999987653
No 50
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.03 E-value=1.8e-10 Score=133.49 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=90.7
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|.+|.++|+|+|+|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+..++-...
T Consensus 420 ~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~-------- 485 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTF-------- 485 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHH--------
T ss_pred ccccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeee--------
Confidence 4688999999999999996 578999999999999 88999999999998877777666521110000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+....| .++-..+...++++||+.++ .++ +.+++.+++
T Consensus 486 ----------~~~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al 523 (565)
T 2nxw_A 486 ----------QPESAF-----------------------------NDLDDWRFADMAAGMGGDGV-RVR--TRAELKAAL 523 (565)
T ss_dssp ----------CTTCGG-----------------------------GBCCCCCHHHHTGGGTSEEE-EEC--BHHHHHHHH
T ss_pred ----------cccCCC-----------------------------CcCCCCCHHHHHHHcCCCEE-EeC--CHHHHHHHH
Confidence 000000 01112345567999999988 454 789999999
Q ss_pred HHhHcCCCCCcE-EEEEEecCCC
Q 004227 411 QRVKEMPAPGPV-LIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~~~~~P~-lI~v~T~KG~ 432 (767)
+++.+ .++|+ +|++.|.+..
T Consensus 524 ~~a~~--~~gp~~liev~~~~~~ 544 (565)
T 2nxw_A 524 DKAFA--TRGRFQLIEAMIPRGV 544 (565)
T ss_dssp HHHHH--CCSSCEEEEEECCTTC
T ss_pred HHHHh--cCCCeEEEEEEccccc
Confidence 99886 46887 9999998654
No 51
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.02 E-value=2.6e-10 Score=131.83 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=88.9
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
+.|++|. +|+|+|+|+|. +++|||++|||+++ +..++|++|.++++|+++||.||+...+ ..
T Consensus 415 ~~g~~G~-l~~A~Gaa~a~-----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~--------~~-- 476 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRAS-----GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQI--------FS-- 476 (556)
T ss_dssp SCCSSSH-HHHHHHHHHHH-----CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC---------------
T ss_pred ccccccH-HHHHHHHHhcC-----CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCc--------cc--
Confidence 3567777 99999999982 78899999999997 6678899999999999999888874211 00
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
.+ . ......+.+....-..+...++++||+.++ .+ ++.+++.+++
T Consensus 477 -~~----------------~---------------~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~~l~~al 521 (556)
T 3hww_A 477 -LL----------------P---------------TPQSERERFYLMPQNVHFEHAAAMFELKYH-RP--QNWQELETAF 521 (556)
T ss_dssp --------------------------------------------CCCCCCCCSHHHHHHTTCEEE-CC--SSHHHHHHHH
T ss_pred -CC----------------C---------------CcchhHHHhccCCCCCCHHHHHHHcCCcEE-ec--CCHHHHHHHH
Confidence 00 0 000000001111123566788999999987 34 5789999999
Q ss_pred HHhHcCCCCCcEEEEEEecCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKG 431 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG 431 (767)
+++.+ .++|++|++.|.+.
T Consensus 522 ~~a~~--~~gp~liev~~~~~ 540 (556)
T 3hww_A 522 ADAWR--TPTTTVIEMVVNDT 540 (556)
T ss_dssp HHHTT--SSSEEEEEEECCSS
T ss_pred HHHHh--CCCCEEEEEECCcc
Confidence 99876 57999999998754
No 52
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.02 E-value=5.3e-10 Score=129.38 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=91.6
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCC-cc-ccccCCCCCC
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQV-SL-PTATLDGPAT 328 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~-S~-pt~~~dg~~~ 328 (767)
+.|++|+++|+|+|+|+| ++++|||++|||+++ +.+++|++|.++++|+++||.||+.+ +. +.....+. .
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~-~ 490 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAG-A 490 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSC-C
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccC-C
Confidence 568999999999999998 478999999999997 56788999999999988888777631 22 11000000 0
Q ss_pred cchhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhcc-CCChhhhHhhcCCeEeeccCCCCHHHHH
Q 004227 329 PVGALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLI-SASGSTFFEELGLYYIGPVDGHNVEDLV 407 (767)
Q Consensus 329 ~vg~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~-~~~~~~lfea~G~~~i~~vDGhdi~~l~ 407 (767)
... .... ..+...++++||+.++. + ++.+++.
T Consensus 491 -~~~-------------------------------------------~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~ 523 (564)
T 2q28_A 491 -PSP-------------------------------------------TDLLHHARYDKLMDAFRGVGYN-V--TTTDELR 523 (564)
T ss_dssp -CCT-------------------------------------------TBCCTTCCGGGGGGGGTCEEEE-E--CSHHHHH
T ss_pred -ccc-------------------------------------------cccCCCCCHHHHHHHcCCeEEE-e--CCHHHHH
Confidence 000 0000 13556779999999874 4 5799999
Q ss_pred HHHHHhHcCCCCCcEEEEEEecCCC
Q 004227 408 TIFQRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 408 ~al~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
++++++.+ .++|++|++.|.+..
T Consensus 524 ~al~~a~~--~~~p~liev~~~~~~ 546 (564)
T 2q28_A 524 HALTTGIQ--SRKPTIINVVIDPAA 546 (564)
T ss_dssp HHHHHHHH--HTSCEEEEEEBCTTS
T ss_pred HHHHHHHh--CCCCEEEEEEecccc
Confidence 99999876 478999999998765
No 53
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=98.99 E-value=3.3e-10 Score=132.29 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=90.6
Q ss_pred CCcccchhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcc
Q 004227 251 GAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPV 330 (767)
Q Consensus 251 g~G~~G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~v 330 (767)
|.|.+|+++|+|+|+|+|. +++|||++|||+++. .+++|++|+++++|+++||.||+...+-..
T Consensus 453 G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~--~~~eL~ta~~~~lp~~ivv~NN~~~~i~~~--------- 516 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYH--DLNGLLAAKKLGIPLTVILVNNDGGGIFSF--------- 516 (604)
T ss_dssp TTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHH--TGGGGHHHHHHCCCEEEEEEECSSCGGGGG---------
T ss_pred CcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHh--HHHHHHHhhhcCCCeEEEEEeCCCCccccc---------
Confidence 5567888999999999994 688999999999985 467899999999998888766653221000
Q ss_pred hhhhHHHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHH
Q 004227 331 GALSSALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIF 410 (767)
Q Consensus 331 g~ls~~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al 410 (767)
+...|. . ...+.+.......+...++++||+.++ .++ +.+++.+++
T Consensus 517 ------~~~~q~-----------------------~--~~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al 562 (604)
T 2x7j_A 517 ------LPQASE-----------------------K--THFEDLFGTPTGLDFKHAAALYGGTYS-CPA--SWDEFKTAY 562 (604)
T ss_dssp ------SGGGSC-----------------------H--HHHHHHTTCCCCCCTHHHHHHTTCEEE-CCS--SHHHHHHHC
T ss_pred ------CCCCcc-----------------------c--hhhHhhccCCCCCCHHHHHHHcCCeEE-ecC--CHHHHHHHH
Confidence 000000 0 000111111223466778999999987 454 789999999
Q ss_pred HHhHcCCCCCcEEEEEEecCCC
Q 004227 411 QRVKEMPAPGPVLIHVVTEKGK 432 (767)
Q Consensus 411 ~~a~~~~~~~P~lI~v~T~KG~ 432 (767)
+++.+ .++|++|++.|.+..
T Consensus 563 ~~a~~--~~gp~liev~~~~~~ 582 (604)
T 2x7j_A 563 APQAD--KPGLHLIEIKTDRQS 582 (604)
T ss_dssp CCCCS--SCCEEEEEEECCHHH
T ss_pred HHHHh--CCCCEEEEEECCccc
Confidence 88765 579999999997543
No 54
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=98.92 E-value=8.2e-10 Score=128.27 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=80.9
Q ss_pred chhHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhH
Q 004227 256 STSISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSS 335 (767)
Q Consensus 256 G~~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~ 335 (767)
|+++|+|+|+|+ ++++|||++|||+++ +.+++|++|.++++|+++||.||+...+ ..
T Consensus 439 ~g~l~~AiGaa~------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~--------~~------- 495 (578)
T 3lq1_A 439 DGVVSSALGASV------VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGI--------FS------- 495 (578)
T ss_dssp SSHHHHHHHHTT------TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC---------------------
T ss_pred ccHHHHHHHHhc------CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCcc--------cc-------
Confidence 346999999974 378999999999998 6778999999999999999988873211 00
Q ss_pred HHHHhhhchhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCCCCHHHHHHHHHHhHc
Q 004227 336 ALSKLQASTNFRKLREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKE 415 (767)
Q Consensus 336 ~L~~l~~~~~~~~ir~~~k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDGhdi~~l~~al~~a~~ 415 (767)
.+...+....|+ .........+...++++||+.++. + ++.+++.++++++.+
T Consensus 496 ~~~~~~~~~~~~-------------------------~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~ 547 (578)
T 3lq1_A 496 FLPQANEPKYFE-------------------------SLFGTSTELDFRFAAAFYDADYHE-A--KSVDELEEAIDKASY 547 (578)
T ss_dssp --------------------------------------------CCCTHHHHHHTTCEEEE-C--CSHHHHHHHHHHHTT
T ss_pred ccccccccchhh-------------------------hhccCCCCCCHHHHHHHcCCceEe-c--CCHHHHHHHHHHHHh
Confidence 000000000000 000001135667889999999873 4 588999999999876
Q ss_pred CCCCCcEEEEEEecCCCCCChh
Q 004227 416 MPAPGPVLIHVVTEKGKGYPPA 437 (767)
Q Consensus 416 ~~~~~P~lI~v~T~KG~G~~~a 437 (767)
.++|++|++.|.+..-+.+.
T Consensus 548 --~~gp~liev~~~~~~~~~~~ 567 (578)
T 3lq1_A 548 --HKGLDIIEVKTNRHENKANH 567 (578)
T ss_dssp --SSSEEEEEEC----------
T ss_pred --CCCCEEEEEECCccccHHHH
Confidence 57999999999876654443
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.88 E-value=1.4e-05 Score=99.91 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=76.7
Q ss_pred CCeEEEEEcCC-cccCcchHHHHHHHHHcCCCEEEEEECCCCCccccccCCCCCCcchhhhHHHHHhhhchhHHHHHHHH
Q 004227 275 NNNVISVIGDG-AMTAGQAYEAMNNAGFLDANLIVVLNDNKQVSLPTATLDGPATPVGALSSALSKLQASTNFRKLREAA 353 (767)
Q Consensus 275 ~~~Vv~viGDG-al~eG~~~EAln~A~~~~~nli~Iv~dN~~~S~pt~~~dg~~~~vg~ls~~L~~l~~~~~~~~ir~~~ 353 (767)
++.|||+.||| +++.| ...|.+|.+.+.|+++||.||+.... |..|.....+.+...
T Consensus 953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~-tg~Q~s~~t~~~~~t------------------- 1010 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSN-TGGQSSKATPTGAVA------------------- 1010 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTT-TTCBCCTTSCTTCCB-------------------
T ss_pred CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHh-HHhhhccCCCCCcee-------------------
Confidence 37899999999 88855 57899999999999999999984222 111221111111000
Q ss_pred HHHhhhcCCchHHHHHHHHHHHhhccCCChhhhHhhcCCeEeeccCC-CCHHHHHHHHHHhHcCCCCCcEEEEEEec
Q 004227 354 KSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDG-HNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 354 k~~~~~~g~~~~~~~~k~~~~~r~~~~~~~~~lfea~G~~~i~~vDG-hdi~~l~~al~~a~~~~~~~P~lI~v~T~ 429 (767)
+ .. ...+..-.++...+++++|+.|+..+.- .+.+++.++++++.+ .+||++|++.+.
T Consensus 1011 ----~-----~~-------~~g~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~--~~GP~lI~v~~~ 1069 (1231)
T 2c42_A 1011 ----K-----FA-------AAGKRTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES--FPGPSLVIAYAT 1069 (1231)
T ss_dssp ----B-----TB-------TTCCSSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH--SSSCEEEEEECC
T ss_pred ----e-----ec-------ccCCCCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh--cCCCEEEEEeec
Confidence 0 00 0000011235566799999998865544 599999999999987 589999999875
No 56
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=92.19 E-value=0.87 Score=52.56 Aligned_cols=113 Identities=10% Similarity=-0.028 Sum_probs=78.0
Q ss_pred cEEeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASEGVKPFCA--IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~G~rP~~~--tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++. ...|++++.+|.|+|...-||.++ |..+.+..++.-+ ..+...++|++++...... .|. ..+|..+..
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl-~~A~~~~vPll~Itg~~p~~~~g~--~~~Q~~d~~ 120 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGL-YDAAMDNIPVVAILGSRPQRELNM--DAFQELNQN 120 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCCH
T ss_pred eEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHH-HHHHhcCCCEEEEcCCCCcccCCC--CcccccCHH
Confidence 4444 599999999999999985444333 4667766666555 3456679998888744332 232 236666666
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRGN 626 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~~ 626 (767)
.+++.+-.. .+.+.+++++..+++.|++. ..+|++| +|...
T Consensus 121 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 121 PMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 788887665 67778888888888877762 3489999 98753
No 57
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=91.84 E-value=1.5 Score=50.71 Aligned_cols=113 Identities=10% Similarity=0.031 Sum_probs=77.5
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEE--eechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFC--AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~--~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~D 582 (767)
|++ ....|++++.+|.|+|.. |-+|-+ .|+.+....++.-+ ..+...+.|++++...... .+. | .+|..+.
T Consensus 67 ~~i-~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l-~~A~~~~vPlvvItg~~p~~~~~~-~-~~Q~~d~ 142 (616)
T 2pan_A 67 RHI-LARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITAL-YSASADSIPILCITGQAPRARLHK-E-DFQAVDI 142 (616)
T ss_dssp EEE-ECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHH-HHHHHTTCCEEEEEEECCGGGTTT-T-CTTCCCH
T ss_pred cEE-eeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCc-c-cccccCH
Confidence 444 459999999999999997 455543 35777766666665 4557789998887643322 232 2 3455555
Q ss_pred HHHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 583 la~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
..+++.+-.+. +...++.++..+++.|++. ..+|++|-+|..
T Consensus 143 ~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 143 EAIAKPVSKMA-VTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp HHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 67788776553 4556778888888888763 357999988753
No 58
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=91.52 E-value=1.7 Score=49.93 Aligned_cols=115 Identities=17% Similarity=0.063 Sum_probs=78.3
Q ss_pred CcEEeccccHHHHHHHHHHHHhcCCeeE--EeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASEGVKPF--CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~G~rP~--~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~D 582 (767)
=|++. ...|++++-+|.|+|...-||. +.|+.+....++.-+ ..+...++|++++...... .|.. ..||..+.
T Consensus 49 i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v-~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~ 125 (573)
T 2iht_A 49 IDFVL-TRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGI-ATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDS 125 (573)
T ss_dssp CEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHH-HHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCH
T ss_pred CeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHH-HHHHhhCCCEEEEcccCcccccCCc-CccccCCH
Confidence 45554 4899999999999999744443 335777766666655 4456779998888644332 2321 35788877
Q ss_pred HHHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 583 la~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
..+++.+... .+...+++++...++.|++. ..+|++|.+|..
T Consensus 126 ~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 126 VAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHhHhhE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 8888887655 45556677777777777652 347999988864
No 59
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=91.20 E-value=1 Score=51.48 Aligned_cols=120 Identities=14% Similarity=0.075 Sum_probs=80.7
Q ss_pred hhhhhCCCcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCC
Q 004227 500 YFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGP 575 (767)
Q Consensus 500 ~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~ 575 (767)
.+.+. +=|++.+ ..|++++.+|.|+|.. |...+|. |+.+....++.-+ ..+...++|++++...... .|. .
T Consensus 36 al~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~--~ 110 (563)
T 2uz1_A 36 ACLDH-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPI-ANAWLDRTPVLFLTGSGALRDDET--N 110 (563)
T ss_dssp HHHHH-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTS--C
T ss_pred HHHhc-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCc--h
Confidence 34433 4566664 9999999999999997 6443333 4777666666555 3456679998888744432 232 2
Q ss_pred CCCC-hhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh----hCCCCEEEEecCC
Q 004227 576 THCG-AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (767)
Q Consensus 576 TH~~-~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~----~~~~P~~irl~r~ 625 (767)
.||. .+...+++.+-.. .+...+++++...+..|++ ...+|++|-+|..
T Consensus 111 ~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 111 TLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 3777 7777888887654 4556677777777777665 2458999988865
No 60
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=91.19 E-value=2.3 Score=48.62 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=72.0
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeE-EeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCC----
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPF-CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---- 579 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~-~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~---- 579 (767)
|++.+ ..|++++.+|.|+|.. | ..+ +.|+.+....++.-+ ..+...++|++++...... .+.+...||.
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAI-GGAYAENLPVILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCChhHhccCcceeeecccc
Confidence 56654 9999999999999975 8 333 334766665555555 3456789998888744332 2333333442
Q ss_pred --hhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCC
Q 004227 580 --AFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (767)
Q Consensus 580 --~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~ 625 (767)
.+...+++.+-.. .+.+.+++++...+..|++ ...+|++|.+|..
T Consensus 120 ~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 120 DYHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp CCCHHHHHHTTSCSC-EEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred chHHHHHHHHhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 1346778877655 3444555555555554443 1349999999865
No 61
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=91.14 E-value=1.1 Score=51.52 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=74.0
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHHhHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCCChhHHHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTF 585 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~-~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~~~~Dla~ 585 (767)
|++.+ ..|++++.+|.|+|.. |.-.+| .|+.+....++.-+ ..+...++|++++.........+-..||..+...+
T Consensus 50 ~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~ 127 (566)
T 1ozh_A 50 RIIPV-RHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGM-ATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAM 127 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC------CCCHHHH
T ss_pred cEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHH-HHHHhcCCCEEEEeCCCccccCCCCcccccCHHHH
Confidence 55554 9999999999999996 543333 35777666655554 34466799988886443321111134677777788
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
++.+... .+...+++++...++.|++. ..+|++|-+|..
T Consensus 128 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 128 FSPVTKY-AIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HGGGCSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHhhe-EEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 8887655 45556777777777666642 358999988864
No 62
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=91.10 E-value=0.92 Score=52.29 Aligned_cols=113 Identities=17% Similarity=0.151 Sum_probs=78.8
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~-~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++. ...|++++.+|.|+|.. |...+| .|+.+....++--+ ..+...++|++++...... .|. ..+|..+..
T Consensus 52 ~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~ 127 (590)
T 1ybh_A 52 RNVL-PRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPIV 127 (590)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHH
T ss_pred cEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHH-HHHHhhCCCEEEEeCcCCccccCC--CcccccCHH
Confidence 4544 48999999999999997 544343 34777666665554 4456779998888643322 232 246666677
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
.+++.+-.+ .+...+++++..+++.|++. ..+|++|-+|..
T Consensus 128 ~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 128 EVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 888887665 56667788888888888863 347999988764
No 63
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=90.19 E-value=2.4 Score=48.37 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=74.6
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~-~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++. ...|++++-+|-|+|.. |.-.+| .|+.+....++.-| ..+...+.||+++...... .|. ..+|..+..
T Consensus 43 ~~i~-~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi-~~A~~~~vPvl~itg~~~~~~~~~--~~~Q~~d~~ 118 (549)
T 3eya_A 43 EWMS-TRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQ 118 (549)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEESCGGGTTS--CCTTCCCHH
T ss_pred eEEE-eCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHH-HHHHhhCCCEEEEeCCCchhhcCC--CCCCccCHH
Confidence 5555 48999999999999996 643333 35777766666554 4556789999888643322 232 235666667
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~ 625 (767)
.+++.+-.. .....+++++...+..|++ ...+|++|-+|..
T Consensus 119 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 119 ELFRECSHY-CELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp HHTSTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred HHHhhhhhe-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 788877654 3445566666666665554 2568999998753
No 64
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=90.19 E-value=2.1 Score=48.94 Aligned_cols=114 Identities=13% Similarity=0.103 Sum_probs=70.3
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCC----
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---- 579 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~---- 579 (767)
|++. ...|++++.+|.|+|.. | ..+|. |+.+....++.-+. .+...++|++++...... .+.+-..||.
T Consensus 43 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia-~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 43 KQIY-CCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISAMNALG-GAYAENLPVILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHH-HHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHHH-HHHhhCCCEEEEECCCChHHhccCceeeeeccCc
Confidence 5555 59999999999999985 8 44443 46666655555553 456789998888744332 2333223442
Q ss_pred --hhHHHHhhcCCCcEEEecCCHHHHHH----HHHHHHhhCCCCEEEEecCCC
Q 004227 580 --AFDVTFMSCLPNMVVMAPSDEAELMH----MVATAAVIDDRPSCFRFPRGN 626 (767)
Q Consensus 580 --~~Dla~lr~iPg~~V~~Psd~~E~~~----~l~~A~~~~~~P~~irl~r~~ 626 (767)
.+...+++.+-... +.+.+++++.. +++.|... .+|++|.+|...
T Consensus 120 ~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d~ 170 (566)
T 2vbi_A 120 DYSYQLEMARQVTCAA-ESITDAHSAPAKIDHVIRTALRE-RKPAYLDIACNI 170 (566)
T ss_dssp CCTHHHHHHHTTCSEE-EEECSSSSHHHHHHHHHHHHHHH-TCCEEEEEETTT
T ss_pred chHHHHHHHhhhEeEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 23467788775542 33334444444 44444433 499999998753
No 65
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=89.68 E-value=2 Score=49.16 Aligned_cols=151 Identities=14% Similarity=0.058 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCEEEEeccccCCcCh---hhhhhhCCCcEEeccccHHHHHHHHHHHHhc-CCeeEE-eech
Q 004227 465 LTYTQYFAESLIKEAETDDKIVAIHAAMGGGTGL---NYFQKRFPDRCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYS 539 (767)
Q Consensus 465 ~s~~~af~~aL~~~~~~d~~ivvi~aD~~gs~gl---~~f~~~~P~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~-~tys 539 (767)
.+..+++.+.|.+.. =+.++..+ |+..+ +.+.+ .+.+.+-....|++++-+|.|+|.. |...+| .|+.
T Consensus 21 ~~~a~~lv~~L~~~G---V~~vfg~P---G~~~~~l~~al~~-~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsG 93 (565)
T 2nxw_A 21 MKLAEALLRALKDRG---AQAMFGIP---GDFALPFFKVAEE-TQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYG 93 (565)
T ss_dssp CBHHHHHHHHHHHTT---CCCEEECC---CGGGHHHHHHHHH-HCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTT
T ss_pred cCHHHHHHHHHHHcC---CCEEEECC---CcchHHHHHHHHh-CCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 466666666555432 23233322 22222 33433 2444445569999999999999996 543333 3477
Q ss_pred hHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCC---hh-HHHHhhcCCCcEEEecCCHHHH----HHHHHH
Q 004227 540 SFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---AF-DVTFMSCLPNMVVMAPSDEAEL----MHMVAT 609 (767)
Q Consensus 540 ~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~---~~-Dla~lr~iPg~~V~~Psd~~E~----~~~l~~ 609 (767)
+....++.-+ ..+...++|++++...... .|.+...|++ .+ ...+++.+-... +...+++++ ..+++.
T Consensus 94 pG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~ 171 (565)
T 2nxw_A 94 AGAFNMVNAV-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQ-ARLDDPAKAPAEIARVLGA 171 (565)
T ss_dssp HHHHTTHHHH-HHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCE-EECCCTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEE-EEeCCHHHHHHHHHHHHHH
Confidence 7666655554 3456789998888744332 3433333332 33 456778765543 333344444 444444
Q ss_pred HHhhCCCCEEEEecCC
Q 004227 610 AAVIDDRPSCFRFPRG 625 (767)
Q Consensus 610 A~~~~~~P~~irl~r~ 625 (767)
|.. ..+|++|-+|..
T Consensus 172 A~~-~~GPV~l~iP~D 186 (565)
T 2nxw_A 172 ARA-QSRPVYLEIPRN 186 (565)
T ss_dssp HHH-HTCCEEEEEEGG
T ss_pred HHh-CCCCEEEECChh
Confidence 443 368999999864
No 66
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=89.31 E-value=1.5 Score=50.42 Aligned_cols=113 Identities=8% Similarity=-0.032 Sum_probs=75.8
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCe-eEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVK-PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~r-P~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++.+ ..|++++-+|.|+|.. |.- .++.|+.+....++--+ ..+...++|++++...... .|. |..||..+..
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~-~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAM-QEARTGRIPAVHIGLNSDGRLAGR-SEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHH-HHHHHTTCCEEEEEEESCGGGTTC-TTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCC-CCcccccChh
Confidence 55554 8999999999999996 543 33445777665555554 4556789998888644332 232 2167777776
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r~ 625 (767)
. ++.+... .+...+++++...+..|++. ..+|++|.+|..
T Consensus 122 ~-~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 122 S-FTPIARS-TQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp G-GTTTSSE-EEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred h-ccccEEE-EeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 7 7776654 45556677777777777652 347999999875
No 67
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=89.17 E-value=2 Score=50.42 Aligned_cols=112 Identities=16% Similarity=0.067 Sum_probs=77.0
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeE-EeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPF-CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~-~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++- ...|++++.+|.|+|.. |.-.+ +.|+.+....++--| ..+...++||+++...... .|. ..+|..+..
T Consensus 122 ~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gi-a~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~ 197 (677)
T 1t9b_A 122 NFVL-PKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVV 197 (677)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHH
T ss_pred eEEE-eCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHH-HHHHHcCCCEEEEeCCCChhhcCC--CCccccCHH
Confidence 5554 49999999999999996 64333 335777766665554 3456679998888643332 232 246666667
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHhh----CCCCEEEEecC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAVI----DDRPSCFRFPR 624 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~~----~~~P~~irl~r 624 (767)
.+++.+-.+. +...+++++...++.|++. ..+|++|-+|.
T Consensus 198 ~i~~~~tk~~-~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 198 GISRSCTKWN-VMVKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HHTGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHhhhheeEE-EEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 7888766553 4456778888888888762 35799998884
No 68
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=88.00 E-value=2.9 Score=48.33 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=70.7
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~-~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++. ...|+++.-+|.|+|.. |.-.+| .|+.+....++.-+ ..+...++||+++...... .|. ..+|..+..
T Consensus 52 ~~i~-~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gi-a~A~~~~vPvl~itG~~~~~~~~~--~~~Q~~d~~ 127 (603)
T 4feg_A 52 HYIQ-VRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNM--DTFQEMNEN 127 (603)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCG
T ss_pred eEEE-ecChHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHH-HHHHHcCCCEEEEecCCcccccCC--CccccccHH
Confidence 6665 48999999999999986 644333 35777766666554 4556789998888633322 232 234555556
Q ss_pred HHhhcCCCcEEEecCCHHHHHH----HHHHHHhhCCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMH----MVATAAVIDDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~----~l~~A~~~~~~P~~irl~r~ 625 (767)
.+++.+-.... ...+++++.. +++.|.. ..+|++|-+|..
T Consensus 128 ~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~d 171 (603)
T 4feg_A 128 PIYADVADYNV-TAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVD 171 (603)
T ss_dssp GGGTTTCSEEE-ECCCSTTHHHHHHHHHHHHHH-HTSEEEEEEETT
T ss_pred HHhhhhceEEE-EcCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 67777655432 3333334444 4444444 468999999875
No 69
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=87.59 E-value=3.4 Score=47.25 Aligned_cols=113 Identities=10% Similarity=0.047 Sum_probs=69.8
Q ss_pred cEEeccccHHHHHHHHHHHHh-cCCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCCh---
Q 004227 508 RCFDVGIAEQHAVTFAAGLAS-EGVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA--- 580 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~-~G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~--- 580 (767)
|++ ....|++++.+|.|+|. .| ..+|. |+.+....++--+ ..+...++|++++...... .+.+...||..
T Consensus 65 ~~i-~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~~~gi-~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~ 141 (570)
T 2vbf_A 65 KWI-GNANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGL-AGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADG 141 (570)
T ss_dssp EEE-ECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred eEE-CcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCCHHHhhccccceeecccc
Confidence 444 45999999999999996 48 44333 4777665666555 3556789998888644332 23233445421
Q ss_pred ---hHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEecCC
Q 004227 581 ---FDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRFPRG 625 (767)
Q Consensus 581 ---~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl~r~ 625 (767)
+...+++.+...... ..+ +++...++.|++ ...+|++|-+|..
T Consensus 142 ~~~~~~~~~~~~tk~~~~-v~~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 142 DFKHFMKMHEPVTAARTL-LTA-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp CCCHHHHHTGGGCSEEEE-CCT-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred chHHHHHHhhhhEEEEEE-ECc-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 234677777655443 334 555555555544 1348999988754
No 70
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=86.44 E-value=4.4 Score=45.78 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=73.5
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++. ...|++++.+|.|+|.. |...+|. |..+.+..++.-+ ..+...++|++++...... .|.+..+| ..+..
T Consensus 40 ~~i~-~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~ 116 (528)
T 1q6z_A 40 RYIL-ALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGAL-SNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAA 116 (528)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGG
T ss_pred cEEE-ECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHH-HHHhhcCCCEEEEeCCCcccccCCCcccc-cccHH
Confidence 4554 58999999999999997 6555553 4656666666665 3456789998888643332 34333332 13455
Q ss_pred HHhhcCCCcEEEecCCHHHHHHHHHHHHh----hCCCCEEEEecCC
Q 004227 584 TFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V~~Psd~~E~~~~l~~A~~----~~~~P~~irl~r~ 625 (767)
.+++.+..+ ...+.+++++...+..|+. ...+|++|-+|..
T Consensus 117 ~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 117 NLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp GSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred HHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 677776655 4455566666666665554 3457999999865
No 71
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=85.69 E-value=8.8 Score=43.71 Aligned_cols=148 Identities=10% Similarity=0.070 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhCC-CEEEEeccccCCcCh---hhhhhhCCC-cEEeccccHHHHHHHHHHHHhc-CCeeEE-eechhHH
Q 004227 470 YFAESLIKEAETDD-KIVAIHAAMGGGTGL---NYFQKRFPD-RCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFL 542 (767)
Q Consensus 470 af~~aL~~~~~~d~-~ivvi~aD~~gs~gl---~~f~~~~P~-R~~d~GIaE~~~vg~AaGlA~~-G~rP~~-~tys~Fl 542 (767)
..++.|.+.+++.. +.++..+ |+..+ +.+.+ .++ |++- ...|+++.-+|-|+|.. |...+| .|+.+..
T Consensus 9 ~~a~~lv~~L~~~GV~~vFg~P---G~~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~ 83 (556)
T 3hww_A 9 RWAAVILEALTRHGVRHICIAP---GSRSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAV 83 (556)
T ss_dssp HHHHHHHHHHHTTTCCEEEECC---CTTSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcC---CCCcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHH
Confidence 34566666665542 3333322 33322 23333 344 5554 57899999999999986 644333 3577776
Q ss_pred HhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHHHHhhcCCCcEEE--ecCC---HHHHHHHHHHHHhh-C
Q 004227 543 QRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMVVM--APSD---EAELMHMVATAAVI-D 614 (767)
Q Consensus 543 ~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dla~lr~iPg~~V~--~Psd---~~E~~~~l~~A~~~-~ 614 (767)
..++--| ..+...+.|++++...... .|.+ .||..+...+++.+-....- .|.+ ++++..+++.|+.. .
T Consensus 84 ~N~~~gi-a~A~~d~vPll~itG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r 160 (556)
T 3hww_A 84 ANLYPAL-IEAGLTGEKLILLTADRPPELIDCG--ANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLH 160 (556)
T ss_dssp HTTHHHH-HHHHHHCCCEEEEEEECCGGGSSSS--CTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCC
T ss_pred HhhhHHH-HHHHHhCCCeEEEeCCCCHHHhccC--CCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCC
Confidence 6665554 4556779998888643322 2332 47777667777776655433 3432 45688899999863 3
Q ss_pred CCCEEEEecCC
Q 004227 615 DRPSCFRFPRG 625 (767)
Q Consensus 615 ~~P~~irl~r~ 625 (767)
.+|++|-+|..
T Consensus 161 ~GPV~i~iP~d 171 (556)
T 3hww_A 161 AGGVHINCPFA 171 (556)
T ss_dssp SSCEEEEEECC
T ss_pred CCCEEEeCCcC
Confidence 47999999864
No 72
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=85.11 E-value=6.8 Score=44.85 Aligned_cols=147 Identities=15% Similarity=0.152 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhC-CCEEEEeccccCCcCh---hhhhhhCCC-cEEeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHH
Q 004227 471 FAESLIKEAETD-DKIVAIHAAMGGGTGL---NYFQKRFPD-RCFDVGIAEQHAVTFAAGLASE-GVKPFC-AIYSSFLQ 543 (767)
Q Consensus 471 f~~aL~~~~~~d-~~ivvi~aD~~gs~gl---~~f~~~~P~-R~~d~GIaE~~~vg~AaGlA~~-G~rP~~-~tys~Fl~ 543 (767)
.++.|.+.+++. =+.++..+ |+..+ +.+.+ .++ |++-+ ..|++++-+|.|+|.. |.-.+| .|..+...
T Consensus 13 ~a~~lv~~L~~~GV~~vFg~P---G~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~ 87 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAIISP---GSRSTPLALMMAE-HPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAA 87 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEECC---CTTTHHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECC---CCccHHHHHHHHh-CCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhh
Confidence 445555555543 23333322 33322 33333 333 66655 7999999999999986 644333 35777766
Q ss_pred hHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHHHHhhcCCCcE--EEecCCHHH----HHHHHHHHHh---
Q 004227 544 RGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDVTFMSCLPNMV--VMAPSDEAE----LMHMVATAAV--- 612 (767)
Q Consensus 544 ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dla~lr~iPg~~--V~~Psd~~E----~~~~l~~A~~--- 612 (767)
.++--| ..+...++|++++...... .|. ..+|..+...+++.+-... |-.|.+..+ +..+++.|+.
T Consensus 88 N~~~gi-a~A~~d~vPll~itG~~p~~~~g~--~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~ 164 (578)
T 3lq1_A 88 NYFPAV-AEANLSQIPLIVLTADRPHELRNV--GAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAM 164 (578)
T ss_dssp TTHHHH-HHHHHTTCCEEEEEEECCGGGTTS--SCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHhcCCCeEEEeCCCCHHhhcC--CCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 665554 4556789998888643322 232 2356665566777665443 345666443 2334444444
Q ss_pred -hCCCCEEEEecCC
Q 004227 613 -IDDRPSCFRFPRG 625 (767)
Q Consensus 613 -~~~~P~~irl~r~ 625 (767)
-..+|++|-+|..
T Consensus 165 ~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 165 KTPRGPVHLNFPLR 178 (578)
T ss_dssp SSSCCCEEEEEECC
T ss_pred CCCCCcEEEECccC
Confidence 2478999999864
No 73
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=83.75 E-value=4.2 Score=46.92 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=70.9
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeE-EeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhHH
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPF-CAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFDV 583 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~-~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~Dl 583 (767)
|++.+ ..|++++-+|.|+|.. |.-.+ +.|+.+....++--+ ..+...++|++++...... .|.+ .+|..+..
T Consensus 71 ~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gi-a~A~~~~vPlv~ItG~~~~~~~g~~--~~Q~~d~~ 146 (604)
T 2x7j_A 71 SVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAV-VEAHYSRVPIIVLTADRPHELREVG--APQAINQH 146 (604)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGSSSC--CTTCCCCT
T ss_pred eEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhCCC--CCCcCcHH
Confidence 66655 9999999999999996 54323 335777665555554 4456679998888643322 2332 35666666
Q ss_pred HHhhcCCCcEE--EecCCH----HHHHHHHHHHHh----hCCCCEEEEecCC
Q 004227 584 TFMSCLPNMVV--MAPSDE----AELMHMVATAAV----IDDRPSCFRFPRG 625 (767)
Q Consensus 584 a~lr~iPg~~V--~~Psd~----~E~~~~l~~A~~----~~~~P~~irl~r~ 625 (767)
.+++.+-.... -.|.+. .++...++.|+. -..+|++|-+|..
T Consensus 147 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 147 FLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp TTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred HHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 67776655433 334441 114445555443 2468999999865
No 74
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=82.79 E-value=16 Score=41.55 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=69.4
Q ss_pred cEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCCh---
Q 004227 508 RCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA--- 580 (767)
Q Consensus 508 R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~--- 580 (767)
|++. ...|++++-+|.|+|.. | .++|. |+.+....++.-+ ..+...++|++++...... .+.+-..||..
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGI-AGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEc-cCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 4554 59999999999999985 7 44444 5677665555554 3445679998888644332 12222223211
Q ss_pred ---hHHHHhhcCCCcEEEecCCH----HHHHHHHHHHHhhCCCCEEEEecCCC
Q 004227 581 ---FDVTFMSCLPNMVVMAPSDE----AELMHMVATAAVIDDRPSCFRFPRGN 626 (767)
Q Consensus 581 ---~Dla~lr~iPg~~V~~Psd~----~E~~~~l~~A~~~~~~P~~irl~r~~ 626 (767)
+...+++.+-... +...++ ..+..+++.|... .+|++|-+|...
T Consensus 121 ~~q~~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 121 DFTVFHRMSANISETT-AMITDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp CSSHHHHHHHTTCSEE-EECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred chHHHHHHhhhhEEEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 2356777766543 333443 4455555555544 489999998753
No 75
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=82.15 E-value=9.3 Score=43.56 Aligned_cols=115 Identities=12% Similarity=0.023 Sum_probs=76.0
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCe-eEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCC-CCCCCCChh
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVK-PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGA-DGPTHCGAF 581 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~r-P~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~-dG~TH~~~~ 581 (767)
=|++.+ ..|++++-+|.|+|.. |.- .++.|+.+....++.-+ ..+...++|++++...... .|. .| .+|..+
T Consensus 48 i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~~~~i-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 124 (568)
T 2c31_A 48 QRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSL-AHATTNCFPMILLSGSSEREIVDLQQG-DYEEMD 124 (568)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCC-CTTCCC
T ss_pred CcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEccCCCccccCCCCC-cccccC
Confidence 466654 9999999999999997 543 33345777766666554 4556789998888644332 231 12 356666
Q ss_pred HHHHhhcCCCcEEEecCCHHHHHHHHHHHHh----hCCCCEEEEecCC
Q 004227 582 DVTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (767)
Q Consensus 582 Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~----~~~~P~~irl~r~ 625 (767)
...+++.+-.. .+...+++++...+..|++ ...+|++|-+|..
T Consensus 125 q~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 125 QMNVARPHCKA-SFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp HHHHSGGGSSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred HHHHHHhhhhe-eeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 66788877655 3444566666666666665 2458999998875
No 76
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=80.28 E-value=12 Score=42.61 Aligned_cols=116 Identities=11% Similarity=-0.002 Sum_probs=75.2
Q ss_pred CcEEeccccHHHHHHHHHHHHhc-CCe-eEEeechhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCChhH
Q 004227 507 DRCFDVGIAEQHAVTFAAGLASE-GVK-PFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGAFD 582 (767)
Q Consensus 507 ~R~~d~GIaE~~~vg~AaGlA~~-G~r-P~~~tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~~D 582 (767)
=|++.+ ..|++++-+|.|+|.. |.- .++.|+.+....++--+ ..+...++|++++...... .+..-..+|..+.
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi-~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq 123 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTAL-ANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQ 123 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCH
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccccH
Confidence 456655 9999999999999997 543 33345777766665554 4556789999888644332 2210123566666
Q ss_pred HHHhhcCCCcEEEecCCHHHHHHHHHHHHh----hCCCCEEEEecCC
Q 004227 583 VTFMSCLPNMVVMAPSDEAELMHMVATAAV----IDDRPSCFRFPRG 625 (767)
Q Consensus 583 la~lr~iPg~~V~~Psd~~E~~~~l~~A~~----~~~~P~~irl~r~ 625 (767)
..+++.+-... +...+++++...+..|++ ...+|++|-+|..
T Consensus 124 ~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 124 MNAAKPYAKAA-FRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhhhee-eecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 77888776553 344455556666666654 2458999988864
No 77
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=76.33 E-value=20 Score=40.56 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=68.2
Q ss_pred CCcEEeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHhHHHHHHHhhhcCCCCEEEEeecCCc--cCCCCCCCCCh-
Q 004227 506 PDRCFDVGIAEQHAVTFAAGLASE-GVKPFCA-IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGA- 580 (767)
Q Consensus 506 P~R~~d~GIaE~~~vg~AaGlA~~-G~rP~~~-tys~Fl~ra~dQi~~~~a~~~lpViiv~~~~Gl--~G~dG~TH~~~- 580 (767)
++=-+-....|++++.+|.|+|.. | .++|. |+.+....++--+ ..+...++|++++...... .+.+...||..
T Consensus 42 ~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~~~gv-~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g 119 (552)
T 1ovm_A 42 PDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLG 119 (552)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCS
T ss_pred CCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHHHHHH-HHHhhhcCCEEEEECCCCHHHHhcccccccccC
Confidence 432334469999999999999986 6 54433 4666665555554 4556789998888643321 12222222211
Q ss_pred -----hHHHHhhcCCCcEEEecC-C-HHHHHHHHHHHHhhCCCCEEEEecCC
Q 004227 581 -----FDVTFMSCLPNMVVMAPS-D-EAELMHMVATAAVIDDRPSCFRFPRG 625 (767)
Q Consensus 581 -----~Dla~lr~iPg~~V~~Ps-d-~~E~~~~l~~A~~~~~~P~~irl~r~ 625 (767)
+...+++.+-......+. + +..+..+++.|... .+|++|-+|..
T Consensus 120 ~~~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 170 (552)
T 1ovm_A 120 DGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLMLPAD 170 (552)
T ss_dssp SSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEEEHH
T ss_pred CCcHHHHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEeehh
Confidence 234567766655444433 1 23344444444433 48999988764
No 78
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=72.04 E-value=9.1 Score=41.51 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhc----C-CeeEEeec--hhHHH-hHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCC-----CChhHHH
Q 004227 518 HAVTFAAGLASE----G-VKPFCAIY--SSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGAFDVT 584 (767)
Q Consensus 518 ~~vg~AaGlA~~----G-~rP~~~ty--s~Fl~-ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH-----~~~~Dla 584 (767)
..+..|.|+|++ | -+++++++ ..|.+ ..++. ++.++..++||++++...++ |..++++ ....+++
T Consensus 146 ~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a 223 (368)
T 1w85_A 146 AQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG-INFAGAFKAPAIFVVQNNRF-AISTPVEKQTVAKTLAQKA 223 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSCSCSGGGG
T ss_pred ccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHH-HHHHHHHCcCEEEEEEcCCc-cceeccccccCCCCHHHHH
Confidence 334556666654 2 23444443 44543 23444 46778899999999876664 2222221 1222322
Q ss_pred HhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEe
Q 004227 585 FMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 585 ~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl 622 (767)
-.-.+|++.| .=.|+.++..+++.|++ ..++|++|-.
T Consensus 224 ~a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 224 VAAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp GGTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HHCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2234565544 44589999999999986 2578998855
No 79
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=71.47 E-value=7.7 Score=42.61 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=57.2
Q ss_pred HHHHHHHHhc------CCeeEEee-chhHHH-hHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCC--ChhHHHHhhcC
Q 004227 520 VTFAAGLASE------GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDVTFMSCL 589 (767)
Q Consensus 520 vg~AaGlA~~------G~rP~~~t-ys~Fl~-ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~--~~~Dla~lr~i 589 (767)
+..|.|+|++ +.+++|.+ -..|.+ ..++. ++.++..++|+++++...++ +..+++.. ...|++-...-
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a 245 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG-FNFAATLECPIIFFCRNNGY-AISTPTSEQYRGDGIAARGPG 245 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSSSTTGGGTGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHH-HHHHHHHCcCEEEEEECCce-eeeecccccCCCCCHHHHHHH
Confidence 3556666654 34444444 344532 22344 46778889999999977664 32233221 22333222221
Q ss_pred CCcEEE--ecCCHHHHHHHHHHHHh---hCCCCEEEEe
Q 004227 590 PNMVVM--APSDEAELMHMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 590 Pg~~V~--~Psd~~E~~~~l~~A~~---~~~~P~~irl 622 (767)
-|+.++ .=.|..++..+++.|++ ..++|++|..
T Consensus 246 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 246 YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 244443 34588899999988875 3578998865
No 80
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=70.15 E-value=6.5 Score=34.62 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=48.5
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHHH
Q 004227 652 GDRVAILGYGS----IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSHV 722 (767)
Q Consensus 652 G~dvtIva~Gs----~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~-~~~~~vVvvEe~~~GGlgs~I 722 (767)
..+|+|.+.++ ....|..|.+.|++.|+..+.+|+..- |--.+.+.+.. ..+-..|+|.....||+....
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l~ 91 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITL 91 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTEEEECHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeCHHHHH
Confidence 45789998883 789999999999999999999998631 11122333332 223346778776789987543
No 81
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=69.60 E-value=12 Score=43.83 Aligned_cols=89 Identities=19% Similarity=0.147 Sum_probs=54.5
Q ss_pred eeEEeechhH-HH--hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCC-CChhHH-HHhhcCCCcEEEec-C---CHH
Q 004227 532 KPFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGAFDV-TFMSCLPNMVVMAP-S---DEA 601 (767)
Q Consensus 532 rP~~~tys~F-l~--ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH-~~~~Dl-a~lr~iPg~~V~~P-s---d~~ 601 (767)
+.++++..+. ++ ..++.+ +.++..++| ++++++..++ +.++++. +..+|+ ..++.. |+.++.+ - |..
T Consensus 149 ~~vv~i~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~ 225 (680)
T 1gpu_A 149 NYTYVFLGDGCLQEGISSEAS-SLAGHLKLGNLIAIYDDNKI-TIDGATSISFDEDVAKRYEAY-GWEVLYVENGNEDLA 225 (680)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHH-TCEEEEESCTTTCHH
T ss_pred CeEEEEECCCccchhhHHHHH-HHHHHhCCCcEEEEEECCCc-eEecccccccCccHHHHHHhc-CCeEEEEecCCCCHH
Confidence 3455554443 23 345554 667888988 8888777664 3334433 112333 234443 7887733 3 788
Q ss_pred HHHHHHHHHHhhCCCCEEEEec
Q 004227 602 ELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 602 E~~~~l~~A~~~~~~P~~irl~ 623 (767)
++..+++.|.+..++|++|...
T Consensus 226 ~l~~al~~A~~~~~~P~lI~~~ 247 (680)
T 1gpu_A 226 GIAKAIAQAKLSKDKPTLIKMT 247 (680)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEEEE
Confidence 9999999887645789988654
No 82
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=68.16 E-value=14 Score=43.25 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=54.3
Q ss_pred eEEeechhH-HH--hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCC-CChhHHH-HhhcCCCcEEEe---cCCHHHH
Q 004227 533 PFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGAFDVT-FMSCLPNMVVMA---PSDEAEL 603 (767)
Q Consensus 533 P~~~tys~F-l~--ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH-~~~~Dla-~lr~iPg~~V~~---Psd~~E~ 603 (767)
.++++..+. ++ ..++.+ +.++..++| ++++++..++ +.++++. +..+|+. .++.. |+.++. =.|..++
T Consensus 148 ~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l 224 (669)
T 2r8o_A 148 YTYAFMGDGCMMEGISHEVC-SLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRDIDGHDAASI 224 (669)
T ss_dssp CEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHH
T ss_pred eEEEEECHhHhcchHHHHHH-HHHHHcCCCcEEEEEECCCc-EeccccccccCccHHHHHHHC-CCeEEeEECCCCHHHH
Confidence 455554443 23 345654 667888988 7777777664 3334433 1223432 44443 777762 3379999
Q ss_pred HHHHHHHHhhCCCCEEEEec
Q 004227 604 MHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 604 ~~~l~~A~~~~~~P~~irl~ 623 (767)
..+++.|.+..++|++|...
T Consensus 225 ~~al~~a~~~~~~P~lI~~~ 244 (669)
T 2r8o_A 225 KRAVEEARAVTDKPSLLMCK 244 (669)
T ss_dssp HHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEE
Confidence 99999987645789988653
No 83
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=67.68 E-value=17 Score=42.50 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=56.3
Q ss_pred eeEEeechhH-HH--hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCC-hhHHH-HhhcCCCcEEE-ec---CCHH
Q 004227 532 KPFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDVT-FMSCLPNMVVM-AP---SDEA 601 (767)
Q Consensus 532 rP~~~tys~F-l~--ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~-~~Dla-~lr~iPg~~V~-~P---sd~~ 601 (767)
+.++++..+. ++ ..++.+ +.++..++| ++++.+..++ +-+|++... .+|+. .++. -|+.++ .- .|..
T Consensus 149 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~d~N~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (673)
T 1r9j_A 149 HYTYVYCGDGCLMEGVCQEAL-SLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQCHQKYVA-MGFHVIEVKNGDTDYE 225 (673)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHHTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHH-TTCEEEEESCTTTCHH
T ss_pred CEEEEEECcchhcccHHHHHH-HHHHHhCCCcEEEEEECCCC-ccccchhhccCHhHHHHHHH-CCCeEEEEeCCCCCHH
Confidence 3455554443 23 335654 566788987 7777777764 334444322 23332 4455 488888 43 6889
Q ss_pred HHHHHHHHHHhhCCCCEEEEec
Q 004227 602 ELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 602 E~~~~l~~A~~~~~~P~~irl~ 623 (767)
++..+++.|.+..++|++|...
T Consensus 226 ~l~~Al~~A~~~~~~P~lI~~~ 247 (673)
T 1r9j_A 226 GLRKALAEAKATKGKPKMIVQT 247 (673)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 9999999887656789988664
No 84
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=66.23 E-value=18 Score=39.10 Aligned_cols=108 Identities=15% Similarity=0.069 Sum_probs=59.5
Q ss_pred eccccHHHHHHHHHHHHhc----C-CeeEEeec--hhHHHh-HHHHHHHhhhcCCCCEEEEeecCCccCCCCCCC-----
Q 004227 511 DVGIAEQHAVTFAAGLASE----G-VKPFCAIY--SSFLQR-GYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH----- 577 (767)
Q Consensus 511 d~GIaE~~~vg~AaGlA~~----G-~rP~~~ty--s~Fl~r-a~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH----- 577 (767)
..|.-+ +.+++|.|+|++ + -++++++. ..|.+- ..|.+ +.++..++|+++++...++ |..+++.
T Consensus 142 ~~g~lG-~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal-~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~ 218 (367)
T 1umd_A 142 VASPIA-SHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGI-NFAAVQGAPAVFIAENNFY-AISVDYRHQTHS 218 (367)
T ss_dssp CCSSTT-TTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHH-HHHHHTTCSEEEEEEECSE-ETTEEHHHHCSS
T ss_pred CCchhh-hhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHH-HHHHHhCcCEEEEEecCCe-eeccChhhccCC
Confidence 444444 334555555543 3 23444443 444322 34443 5677899999998877663 4333321
Q ss_pred CChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEe
Q 004227 578 CGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 578 ~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl 622 (767)
....+++-.-.+|.+. +.-.|..++..+++.|++ ..++|++|-.
T Consensus 219 ~d~~~~a~a~G~~~~~-Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 219 PTIADKAHAFGIPGYL-VDGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp SCSGGGGGGTTSCEEE-EETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHcCCcEEE-eCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1222322222356554 356788888887777765 3578998865
No 85
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=65.07 E-value=8.1 Score=35.78 Aligned_cols=67 Identities=16% Similarity=0.078 Sum_probs=46.5
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc-cCCEEEEEcCCCCCCHHH
Q 004227 653 DRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFGS 720 (767)
Q Consensus 653 ~dvtIva~G----s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~-~~~~vVvvEe~~~GGlgs 720 (767)
.+|+|.+.| ..+..|.+|.+.|++.|+..+.+|+.. .|--.+.+++... .+-..|+++....||+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~tvP~VfI~G~~iGG~d~ 106 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDI 106 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCCcCEEEECCEEEEChHH
Confidence 368888887 678899999999999999999999874 2211223333322 222467787666899854
No 86
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=63.46 E-value=21 Score=42.02 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=56.4
Q ss_pred eeEEeechh--HHH-hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCC-hhHH-HHhhcCCCcEEEec---CCHHH
Q 004227 532 KPFCAIYSS--FLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAP---SDEAE 602 (767)
Q Consensus 532 rP~~~tys~--Fl~-ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~-~~Dl-a~lr~iPg~~V~~P---sd~~E 602 (767)
+.++++..+ +.. ..++.+ +.++..++| ++++.+..++ +.+|+++.. .+|+ ..+++. |+.++.+ .|..+
T Consensus 173 ~~v~~i~GDG~l~eG~~~Eal-~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~ 249 (690)
T 3m49_A 173 HYTYAICGDGDLMEGVSAEAS-SLAAHLQLGRLVVLYDSNDI-SLDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEA 249 (690)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHH
T ss_pred CeEEEEECchhhhhccHHHHH-HHHHHhCCCeEEEEEECCCe-ecccchhhccchhHHHHHHHc-CCcEEEEecCCCHHH
Confidence 345555444 331 345554 667888987 6667776664 445554322 2232 344544 8898888 78999
Q ss_pred HHHHHHHHHhhCCCCEEEEec
Q 004227 603 LMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 603 ~~~~l~~A~~~~~~P~~irl~ 623 (767)
+..+++.|.+..++|++|...
T Consensus 250 l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 250 IAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEE
Confidence 999999886546789988654
No 87
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=62.78 E-value=11 Score=33.38 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=50.0
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 652 GDRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 652 G~dvtIva~G----s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~-~~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
...|+|.+-| +.+..|.+|.+.|++.|+..+.+|+.. .|--.+.+.+.. ..+-..|.|+....||+... ..+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l--~~l 91 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPTYPQLYVSGELIGGLDII--KEL 91 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEECHHHH--HHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCCCCEEEECCEEEecHHHH--HHH
Confidence 4568888776 567899999999999999999999874 121112333332 22335677877678998642 234
Q ss_pred HhcC
Q 004227 727 TLSG 730 (767)
Q Consensus 727 ~~~~ 730 (767)
.++|
T Consensus 92 ~~~G 95 (111)
T 3zyw_A 92 EASE 95 (111)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 4454
No 88
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=60.05 E-value=15 Score=40.37 Aligned_cols=100 Identities=11% Similarity=-0.026 Sum_probs=55.4
Q ss_pred HHHHHHHHhc------CCeeEEee-chhHHH-hHHHHHHHhhhcCCCCEEEEeecCCccCCCCCCCC---ChhHH---HH
Q 004227 520 VTFAAGLASE------GVKPFCAI-YSSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC---GAFDV---TF 585 (767)
Q Consensus 520 vg~AaGlA~~------G~rP~~~t-ys~Fl~-ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~TH~---~~~Dl---a~ 585 (767)
+..|.|+|++ +.++++.+ -..|.+ ..++. ++.++..++||++++...++ |..+++.. ...|+ +-
T Consensus 187 lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~Vv~NN~~-gi~~~~~~~~~~~~d~a~~a~ 264 (407)
T 1qs0_A 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA-LTFAHVYRAPVILNVVNNQW-AISTFQAIAGGESTTFAGRGV 264 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH-HHHHHHHTCCEEEEEEECSE-ETTEEGGGGTTTTCCSTHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHH-HHHHHHHCcCEEEEEECCCc-ceeeccccccCCCCCHHHHHH
Confidence 3555666654 33444443 233432 22444 46777889999999877664 22222221 12232 22
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhh---CCCCEEEEe
Q 004227 586 MSCLPNMVVMAPSDEAELMHMVATAAVI---DDRPSCFRF 622 (767)
Q Consensus 586 lr~iPg~~V~~Psd~~E~~~~l~~A~~~---~~~P~~irl 622 (767)
.-.+|.+. +.=.|..++..+++.|++. .++|++|-.
T Consensus 265 a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 265 GCGIASLR-VDGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp HTTCEEEE-EETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HcCCeEEE-EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22344443 3445788999999888752 578998855
No 89
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=59.41 E-value=8.2 Score=33.77 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=46.4
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc-cCCEEEEEcCCCCCCHHH
Q 004227 652 GDRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFGS 720 (767)
Q Consensus 652 G~dvtIva~G----s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~-~~~~vVvvEe~~~GGlgs 720 (767)
..+|+|.+.| .....|..|.+.|++.|+..+.+|+.. .|--.+.+.+... .+-.+|+++....||+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~ifi~g~~igG~d~ 86 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDI 86 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS-CHHHHHHHHHHHSCCSSCEEECSSSEEECHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEcCHHH
Confidence 3469999988 677899999999999999999999864 1211123333332 222356677666899853
No 90
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=58.06 E-value=26 Score=40.97 Aligned_cols=89 Identities=11% Similarity=0.045 Sum_probs=52.5
Q ss_pred eeEEeechhH-HH--hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCC-hhHH-HHhhcCCCcEEEec---CCHHH
Q 004227 532 KPFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAP---SDEAE 602 (767)
Q Consensus 532 rP~~~tys~F-l~--ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~-~~Dl-a~lr~iPg~~V~~P---sd~~E 602 (767)
+.++++..+. ++ ..++.+ +.++..++| ++++.+..++ +-+|++... .+|+ ..+++. |+.++.+ .|..+
T Consensus 149 ~~v~~i~GDG~l~eG~~~Eal-~~A~~~~L~~livi~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 225 (663)
T 3kom_A 149 HHTYVFLGDGCLMEGVSHEAC-SLAGTLGLNKLVAFWDDNNI-SIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVA 225 (663)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHHTCTTEEEEEEECC------CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECchhhhhchHHHHH-HHHHHhCCCeEEEEEECCCc-ccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHH
Confidence 4455554443 22 345554 667888998 6677776664 334443321 1232 344554 8887744 37899
Q ss_pred HHHHHHHHHhhCCCCEEEEec
Q 004227 603 LMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 603 ~~~~l~~A~~~~~~P~~irl~ 623 (767)
+..+++.|.+..++|++|...
T Consensus 226 l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 226 IEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp HHHHHHHHHHCSSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEe
Confidence 999999886545789988664
No 91
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=57.98 E-value=32 Score=40.08 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=54.1
Q ss_pred eeEEeechhH-HH--hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCC-hhHH-HHhhcCCCcEEEecC---CHHH
Q 004227 532 KPFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAPS---DEAE 602 (767)
Q Consensus 532 rP~~~tys~F-l~--ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~-~~Dl-a~lr~iPg~~V~~Ps---d~~E 602 (767)
+.++++..+. ++ ..++.+ +.++..++| ++++++..++ +-++++... ..|+ ..++.. |+.++.+. |..+
T Consensus 151 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 227 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGEAA-SLAGHWGLSKLIVFWDDNRI-SIDGPTDLAFTEDVLARYRAY-GWQTLRVEDVNDLEA 227 (651)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECCE-ETTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTCHHH
T ss_pred CEEEEEEChhhhchhHHHHHH-HHHHHcCCCeEEEEEECCCc-ccccccccccCccHHHHHHhC-CCeEEEEeCCCCHHH
Confidence 3455554443 23 345554 667888988 7787777664 223332211 2333 344553 88887343 7999
Q ss_pred HHHHHHHHHhhCCCCEEEEec
Q 004227 603 LMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 603 ~~~~l~~A~~~~~~P~~irl~ 623 (767)
+..+++.|.+ .++|++|...
T Consensus 228 l~~al~~a~~-~~~P~lI~~~ 247 (651)
T 2e6k_A 228 LRKAIKLAKL-DERPTLIAVR 247 (651)
T ss_dssp HHHHHHHHHH-SSSCEEEEEE
T ss_pred HHHHHHHHHH-CCCCEEEEEE
Confidence 9999999876 6889988653
No 92
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=56.84 E-value=32 Score=36.45 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=26.9
Q ss_pred Hhhc-CCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEec
Q 004227 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTE 429 (767)
Q Consensus 387 fea~-G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T~ 429 (767)
+... ||.++.| .|.++....++.+.+ .++|++|...+.
T Consensus 138 l~~iP~l~V~~P---sd~~e~~~~l~~A~~--~~~Pv~i~~p~~ 176 (338)
T 1qs0_B 138 FTQVCGLRTVMP---SNPYDAKGLLIASIE--CDDPVIFLEPKR 176 (338)
T ss_dssp HTTSTTCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEEGG
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--cCCcEEEEEchH
Confidence 4554 8887666 677788878877776 368999976543
No 93
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=55.86 E-value=36 Score=39.78 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=54.2
Q ss_pred eeEEeechhH-HH--hHHHHHHHhhhcCCC-CEEEEeecCCccCCCCCCCC-ChhHH-HHhhcCCCcEEEecC----CHH
Q 004227 532 KPFCAIYSSF-LQ--RGYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC-GAFDV-TFMSCLPNMVVMAPS----DEA 601 (767)
Q Consensus 532 rP~~~tys~F-l~--ra~dQi~~~~a~~~l-pViiv~~~~Gl~G~dG~TH~-~~~Dl-a~lr~iPg~~V~~Ps----d~~ 601 (767)
+.++++..+. ++ ..++.+ +.++..++ |++++.+..++ +-+|++.. ...|+ ..++.. |+.++.+. |..
T Consensus 160 ~~v~~i~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~ 236 (675)
T 1itz_A 160 HYTYVILGDGCQMEGIANEAC-SLAGHWGLGKLIAFYDDNHI-SIDGDTEIAFTEDVSTRFEAL-GWHTIWVKNGNTGYD 236 (675)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTTCHH
T ss_pred CEEEEEECHhHhchhHHHHHH-HHHHHhCCCcEEEEEECCCc-cCCCChhhhcChhHHHHHHhC-CCEEEEEecCCCCHH
Confidence 3455554443 23 345654 66778887 58888877764 22333221 12333 345554 88887443 788
Q ss_pred HHHHHHHHHHhhCCCCEEEEec
Q 004227 602 ELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 602 E~~~~l~~A~~~~~~P~~irl~ 623 (767)
++..+++.|.+..++|++|...
T Consensus 237 ~l~~al~~a~~~~~~P~lI~~~ 258 (675)
T 1itz_A 237 DIRAAIKEAKAVTDKPTLIKVT 258 (675)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEEe
Confidence 9999999887645789988664
No 94
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=54.19 E-value=28 Score=40.28 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=21.3
Q ss_pred ecCCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 596 APSDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 596 ~Psd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
...|..++...++.|.+ .++|++|...
T Consensus 260 dG~d~~~l~~al~~A~~-~~~P~lI~v~ 286 (629)
T 2o1x_A 260 DGHNVQELVWLLERLVD-LDGPTILHIV 286 (629)
T ss_dssp ESSCHHHHHHHHHHHTT-SSSEEEEEEE
T ss_pred CCcCHHHHHHHHHHHHh-cCCCEEEEEE
Confidence 45689999999999865 5789987553
No 95
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=53.96 E-value=19 Score=29.84 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcccCCC-CcHH---HHHHHhc-c-----CCEEEEEcCC-CCCCHHHH
Q 004227 663 IVQQCVLAANMLKSQDISVTVADARFCKP-LDTD---LIRQLAN-E-----HEILITVEEG-SVGGFGSH 721 (767)
Q Consensus 663 ~v~~al~Aa~~L~~~GI~v~VIdl~slkP-lD~e---~i~~~~~-~-----~~~vVvvEe~-~~GGlgs~ 721 (767)
....|.+|.+.|++.|++.+.+|+..... .+.+ .+.+... . +=..|+++++ ..||+...
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~l 82 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQL 82 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHHH
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHHH
Confidence 56889999999999999999999975321 2333 3333332 2 2246667444 47998754
No 96
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=51.80 E-value=19 Score=38.89 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=56.1
Q ss_pred HHHHHHHHHhc----C-CeeEEeec--hhHHH-hHHHHHHHhhhcCCCCEEEEeecCCccCCCCCC--CCChhHHHH-hh
Q 004227 519 AVTFAAGLASE----G-VKPFCAIY--SSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT--HCGAFDVTF-MS 587 (767)
Q Consensus 519 ~vg~AaGlA~~----G-~rP~~~ty--s~Fl~-ra~dQi~~~~a~~~lpViiv~~~~Gl~G~dG~T--H~~~~Dla~-lr 587 (767)
.+..|.|+|++ | -+++++++ ..+.+ ..++. ++.++..++||++++...++ |...++ .....|+.- ..
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ea-ln~A~~~~lpvi~vv~NN~~-g~~t~~~~~~~~~~~~~ra~ 222 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA-YNMAALWKLPCIFICENNRY-GMGTSVERAAASTDYYKRGD 222 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEHHHHCSCCCGGGTTT
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHH-HHHHHHHCcCEEEEEECCCc-ccCCCcccccCCCCHHHHhC
Confidence 34556666654 2 34444443 33332 23444 37778899999999876664 211110 111112211 11
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEe
Q 004227 588 CLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 588 ~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl 622 (767)
.+|++.| .=.|+.++..+++.|++ ..++|++|-.
T Consensus 223 g~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 223 FIPGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp TSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3565544 44589999999988875 3578998754
No 97
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=50.66 E-value=30 Score=40.77 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=55.3
Q ss_pred eeEEeechh--HHH-hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCC-hhHH-HHhhcCCCcEEEec---CCHHH
Q 004227 532 KPFCAIYSS--FLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-AFDV-TFMSCLPNMVVMAP---SDEAE 602 (767)
Q Consensus 532 rP~~~tys~--Fl~-ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~-~~Dl-a~lr~iPg~~V~~P---sd~~E 602 (767)
+.++++..+ |.. ..++.+ +.++..++| ++++.+..++ +-+|+++.. ..|+ ..+++. |+.++.| .|..+
T Consensus 188 ~~vv~i~GDG~l~eG~~~Eal-~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 264 (711)
T 3uk1_A 188 HHTYVFLGDGCLMEGISHEAC-SLAGTLKLNKLIALYDDNGI-SIDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDA 264 (711)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECCcchhhccHHHHH-HHHHHhCCCcEEEEEECCCc-ccccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHH
Confidence 345555444 331 355554 667889998 7777777664 333444321 2232 344554 7777765 58899
Q ss_pred HHHHHHHHHhhCCCCEEEEec
Q 004227 603 LMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 603 ~~~~l~~A~~~~~~P~~irl~ 623 (767)
+..+++.|.+ .++|++|...
T Consensus 265 l~~Al~~A~~-~~~P~lI~v~ 284 (711)
T 3uk1_A 265 IDAAIAKAKR-SDKPSLICCK 284 (711)
T ss_dssp HHHHHHHHTT-CSSCEEEEEE
T ss_pred HHHHHHHHHh-CCCCEEEEEc
Confidence 9999998865 6889988654
No 98
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=50.34 E-value=18 Score=31.13 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=49.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc-----cCCEEEEEcCCC-CCCH-HHHHHHH
Q 004227 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-----EHEILITVEEGS-VGGF-GSHVCHF 725 (767)
Q Consensus 653 ~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~-----~~~~vVvvEe~~-~GGl-gs~I~~~ 725 (767)
+.|+|.+. +....|..|.+.|++.||..+.+|+.. |.+...++.+ .+=.+|++.++. ..|+ ..+|.+.
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~ 78 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAK 78 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHH
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHH
Confidence 35777775 677889999999999999999999863 4444333321 222566776665 4565 3567777
Q ss_pred HHhcC
Q 004227 726 LTLSG 730 (767)
Q Consensus 726 l~~~~ 730 (767)
|.+.+
T Consensus 79 L~el~ 83 (92)
T 2lqo_A 79 LVKIA 83 (92)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77643
No 99
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=48.89 E-value=32 Score=40.02 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcC------------CeeEEeechhH-HH--hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCC-Chh
Q 004227 519 AVTFAAGLASEG------------VKPFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAF 581 (767)
Q Consensus 519 ~vg~AaGlA~~G------------~rP~~~tys~F-l~--ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~-~~~ 581 (767)
.++.|.|+|++- -+.++++..+. ++ ..++.+ +.++..++| ++++.+..++ +-+|++.. ..+
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal-~~A~~~~L~~livi~nnN~~-~i~~~~~~~~~~ 196 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEAC-SLAGLHKLDNFILIYDSNNI-SIEGDVGLAFNE 196 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCC
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHH-HHHHHcCCCcEEEEEECCCc-ccccchhhhcCh
Confidence 355666666642 24455554443 22 455554 667888987 7777777664 22333322 122
Q ss_pred HH-HHhhcCCCcEEEecC---CHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 582 DV-TFMSCLPNMVVMAPS---DEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 582 Dl-a~lr~iPg~~V~~Ps---d~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
|+ ..++++ |+.++ +. |..++..+++.|.+ .++|++|...
T Consensus 197 d~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~-~~~P~lI~v~ 239 (632)
T 3l84_A 197 NVKMRFEAQ-GFEVL-SINGHDYEEINKALEQAKK-STKPCLIIAK 239 (632)
T ss_dssp CHHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHHT-CSSCEEEEEE
T ss_pred hHHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 32 345554 88877 44 78999999999865 6889988654
No 100
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=48.49 E-value=18 Score=31.12 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=44.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh--ccCCEEEEEcCCCCCCHHHHH
Q 004227 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA--NEHEILITVEEGSVGGFGSHV 722 (767)
Q Consensus 653 ~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~--~~~~~vVvvEe~~~GGlgs~I 722 (767)
.+|+|.+. +....|..|.+.|++.|+..+.+|+..-.+ -.+.+.+.. ..+-..|+++....||+...+
T Consensus 16 ~~v~vy~~-~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~-~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l~ 85 (99)
T 3qmx_A 16 AKIEIYTW-STCPFCMRALALLKRKGVEFQEYCIDGDNE-AREAMAARANGKRSLPQIFIDDQHIGGCDDIY 85 (99)
T ss_dssp CCEEEEEC-TTCHHHHHHHHHHHHHTCCCEEEECTTCHH-HHHHHHHHTTTCCCSCEEEETTEEEESHHHHH
T ss_pred CCEEEEEc-CCChhHHHHHHHHHHCCCCCEEEEcCCCHH-HHHHHHHHhCCCCCCCEEEECCEEEeChHHHH
Confidence 46777765 667899999999999999999999864211 112233332 122245667665689987533
No 101
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=47.57 E-value=26 Score=31.42 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=47.7
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhcCCCc-EEEEEcccCCCCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHH
Q 004227 652 GDRVAILGYG----SIVQQCVLAANMLKSQDIS-VTVADARFCKPLDTDLIRQLA-NEHEILITVEEGSVGGFGSH 721 (767)
Q Consensus 652 G~dvtIva~G----s~v~~al~Aa~~L~~~GI~-v~VIdl~slkPlD~e~i~~~~-~~~~~vVvvEe~~~GGlgs~ 721 (767)
..+|+|.+.+ ..+..|.+|.+.|++.|+. .+.+|+.. .|--.+.+.+.. ..+-..|+|+....||+...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~-d~~~~~~l~~~tg~~tvP~vfI~g~~IGG~d~l 93 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD-DPELRQGIKDYSNWPTIPQVYLNGEFVGGCDIL 93 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC-CHHHHHHHHHHhCCCCcCeEEECCEEEeChHHH
Confidence 4579999998 3789999999999999995 99999862 111112333332 23345677887678998643
No 102
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=45.87 E-value=51 Score=38.77 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=55.1
Q ss_pred eEEeechhH-HH--hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCC-ChhHH-HHhhcCCCcEEEec---CCHHHH
Q 004227 533 PFCAIYSSF-LQ--RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GAFDV-TFMSCLPNMVVMAP---SDEAEL 603 (767)
Q Consensus 533 P~~~tys~F-l~--ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~-~~~Dl-a~lr~iPg~~V~~P---sd~~E~ 603 (767)
.++++..+. ++ ..+|.+ +.++..++| ++++.+..++ +-+|++.. ..+|+ ..+++. |+.++.. .|..++
T Consensus 170 ~v~~~~GDG~l~eG~~~EAl-~~A~~~~L~nli~i~d~N~~-si~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~al 246 (700)
T 3rim_A 170 YIYVIASDGDIEEGVTSEAS-SLAAVQQLGNLIVFYDRNQI-SIEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVGI 246 (700)
T ss_dssp CEEEEEEHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHHH
T ss_pred eEEEEECCcccccChHHHHH-HHHHHcCCCcEEEEEECCCc-ccccchhhccchhHHHHHHHc-CCeEEEECCCCCHHHH
Confidence 445554443 22 345554 677889997 8888877764 22333321 12232 234443 7777765 588999
Q ss_pred HHHHHHHHhhCCCCEEEEec
Q 004227 604 MHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 604 ~~~l~~A~~~~~~P~~irl~ 623 (767)
..+++.|.+..++|++|...
T Consensus 247 ~~Al~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 247 EEAIANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEE
Confidence 99999986546889998764
No 103
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=45.13 E-value=84 Score=36.19 Aligned_cols=50 Identities=10% Similarity=0.341 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEcCCcccCcchHHH-HHHHHHcCCCEEEEEECCCC
Q 004227 258 SISAGLGMAVARDILGKNNNVISVIGDGAMTAGQAYEA-MNNAGFLDANLIVVLNDNKQ 315 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~viGDGal~eG~~~EA-ln~A~~~~~nli~Iv~dN~~ 315 (767)
.+++|.|+|++ | -+.+++.+++... ..+|- ++.++..++|+++++..-+.
T Consensus 373 ~~~~a~G~A~~----G-~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pvv~~~~~~g~ 423 (621)
T 2o1s_A 373 AVTFAAGLAIG----G-YKPIVAIYSTFLQ---RAYDQVLHDVAIQKLPVLFAIDRAGI 423 (621)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEETTGGG---GGHHHHHHTTTTTTCCCEEEEESCBC
T ss_pred HHHHHHHHHHC----C-CEEEEEehHhHHH---HHHHHHHHHHHhcCCCEEEEEECCcc
Confidence 35667777764 4 4667777888752 57765 67788889999999966553
No 104
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=43.45 E-value=24 Score=31.71 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=46.7
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHhcCCCc---EEEEEcccCCCCcHHH---HHHHh-ccCCEEEEEcCCCCCCHHH
Q 004227 652 GDRVAILGYGS----IVQQCVLAANMLKSQDIS---VTVADARFCKPLDTDL---IRQLA-NEHEILITVEEGSVGGFGS 720 (767)
Q Consensus 652 G~dvtIva~Gs----~v~~al~Aa~~L~~~GI~---v~VIdl~slkPlD~e~---i~~~~-~~~~~vVvvEe~~~GGlgs 720 (767)
..+|+|.+.|+ ....|..|.+.|++.|+. .+.+|+.. |.+. +.+.. ..+-..|+|.....||+..
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~ 90 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DPELREGIKEFSEWPTIPQLYVNKEFIGGCDV 90 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CHHHHHHHHHHhCCCCCCeEEECCEEEecHHH
Confidence 45789999884 788999999999999998 88999752 3332 33222 2233567788767899864
Q ss_pred H
Q 004227 721 H 721 (767)
Q Consensus 721 ~ 721 (767)
.
T Consensus 91 l 91 (121)
T 3gx8_A 91 I 91 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 105
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=41.27 E-value=17 Score=30.68 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=45.4
Q ss_pred cEEEEEechhHHHH------HHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc---cCCEEEEEcCCCCCCHHHHHHH
Q 004227 654 RVAILGYGSIVQQC------VLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN---EHEILITVEEGSVGGFGSHVCH 724 (767)
Q Consensus 654 dvtIva~Gs~v~~a------l~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~---~~~~vVvvEe~~~GGlgs~I~~ 724 (767)
+|+|.++ +....| ..|.+.|++.|+..+.+|+..- |-..+.+.+... .+=..|++++...||+.... +
T Consensus 3 ~v~ly~~-~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~-~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l~-~ 79 (93)
T 1t1v_A 3 GLRVYST-SVTGSREIKSQQSEVTRILDGKRIQYQLVDISQD-NALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFV-E 79 (93)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSC-HHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHHH-H
T ss_pred CEEEEEc-CCCCCchhhHHHHHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHHHH-H
Confidence 4555554 344555 8899999999999999999732 222233444432 12356778877789986533 2
Q ss_pred HHHhcC
Q 004227 725 FLTLSG 730 (767)
Q Consensus 725 ~l~~~~ 730 (767)
+.++|
T Consensus 80 -l~~~g 84 (93)
T 1t1v_A 80 -AVEQD 84 (93)
T ss_dssp -HHHTT
T ss_pred -HHhcC
Confidence 34444
No 106
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=38.07 E-value=21 Score=33.75 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=25.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEc
Q 004227 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADA 686 (767)
Q Consensus 653 ~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl 686 (767)
.||+||+.|..- +.||-.|++.|++|.|++-
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH---HHHHHHHHHCCCCEEEEEC
Confidence 389999999754 4567788889999999984
No 107
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=37.19 E-value=78 Score=33.60 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=25.3
Q ss_pred Hhhc-CCeEeeccCCCCHHHHHHHHHHhHcCCCCCcEEEEEEe
Q 004227 387 FEEL-GLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVT 428 (767)
Q Consensus 387 fea~-G~~~i~~vDGhdi~~l~~al~~a~~~~~~~P~lI~v~T 428 (767)
+... ||.++.| .|..+....++.+.+ .++|++|....
T Consensus 154 l~~iP~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~p~ 191 (342)
T 2bfd_B 154 FAHCPGIKVVIP---RSPFQAKGLLLSCIE--DKNPCIFFEPK 191 (342)
T ss_dssp HHTSTTCEEECC---SSHHHHHHHHHHHHH--SSSCEEEEEEG
T ss_pred HhcCCCcEEEee---CCHHHHHHHHHHHHh--cCCcEEEEecc
Confidence 3444 7776656 567777777777766 36899987653
No 108
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=36.36 E-value=1.2e+02 Score=31.67 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEE-E-EcCCcccCcchHHHHHH-HHH--------cCCCEEEEEE
Q 004227 258 SISAGLGMAVARDILGKNNNVIS-V-IGDGAMTAGQAYEAMNN-AGF--------LDANLIVVLN 311 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~-v-iGDGal~eG~~~EAln~-A~~--------~~~nli~Iv~ 311 (767)
.+++|.|+|++ | .+.++ + .+++. + ..+|.+.+ ++. .+.|++++++
T Consensus 62 ~v~~a~G~A~~----G--~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 117 (324)
T 1w85_B 62 IGGLAIGLALQ----G--FRPVPEIQFFGFV-Y--EVMDSICGQMARIRYRTGGRYHMPITIRSP 117 (324)
T ss_dssp HHHHHHHHHHT----T--CEEEEBCSSGGGG-G--GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE
T ss_pred HHHHHHHHHhC----C--CEEEEEecchhHH-H--HHHHHHHHHHHHHhhhccCCCcCCEEEEEe
Confidence 46677777764 3 34554 4 88886 3 68898864 444 5799999886
No 109
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=36.06 E-value=33 Score=29.41 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=43.6
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhc-cCCEEEEEcCCCCCCHHHH
Q 004227 653 DRVAILGYG----SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLAN-EHEILITVEEGSVGGFGSH 721 (767)
Q Consensus 653 ~dvtIva~G----s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~-~~~~vVvvEe~~~GGlgs~ 721 (767)
..|+|.+.| +....|..|.+.|++.|+....+|+..- |--.+.+.+... .+=..|+++....||+...
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~v~i~g~~igg~d~~ 89 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED-EEVRQGLKAYSNWPTYPQLYVKGELVGGLDIV 89 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTEEEECHHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeChHHH
Confidence 357777765 5678899999999999999999998642 211122333332 2223456665557998743
No 110
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=35.88 E-value=1.4e+02 Score=32.13 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEE-EcCCcccCcchHHHHHH-HHHc--------CCCEEEEEECCC
Q 004227 258 SISAGLGMAVARDILGKNNNVISV-IGDGAMTAGQAYEAMNN-AGFL--------DANLIVVLNDNK 314 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~v-iGDGal~eG~~~EAln~-A~~~--------~~nli~Iv~dN~ 314 (767)
.+++|.|+|++ | -+.++++ ++|... .+++.+.+ ++.. ++|+++++..-+
T Consensus 110 ~v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 110 ILGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp HHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 46677777764 3 3444445 899773 68898755 5544 899999987554
No 111
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=35.72 E-value=1.1e+02 Score=35.19 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=55.4
Q ss_pred HHHHHHHHHhc----C--CeeEEeec--hhHH-HhHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCCC--hhHH-HH
Q 004227 519 AVTFAAGLASE----G--VKPFCAIY--SSFL-QRGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG--AFDV-TF 585 (767)
Q Consensus 519 ~vg~AaGlA~~----G--~rP~~~ty--s~Fl-~ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~~--~~Dl-a~ 585 (767)
.++.|.|+|++ + -+.++++. ..|. -..++.+ +.++..++| ++++.+..++ +.++++... ..|+ ..
T Consensus 126 gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal-~~A~~~~l~~livi~nnN~~-~i~~~~~~~~~~~~~~~~ 203 (616)
T 3mos_A 126 GLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAM-AFASIYKLDNLVAILDINRL-GQSDPAPLQHQMDIYQKR 203 (616)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHH-HHHHHTTCTTEEEEEEECSB-CSSSBCTTTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHH-HHHHHcCCCcEEEEEECCCC-CCcCCcccccChHHHHHH
Confidence 35666666664 1 13444443 3343 1445554 667788997 5556666664 334444332 3343 34
Q ss_pred hhcCCCcEEEec--CCHHHHHHHHHHHHhhCCCCEEEEec
Q 004227 586 MSCLPNMVVMAP--SDEAELMHMVATAAVIDDRPSCFRFP 623 (767)
Q Consensus 586 lr~iPg~~V~~P--sd~~E~~~~l~~A~~~~~~P~~irl~ 623 (767)
++.+ |+.++.- .|..++..+++.+ .++|++|...
T Consensus 204 ~~a~-G~~~~~VdG~d~~~l~~al~~~---~~~P~lI~v~ 239 (616)
T 3mos_A 204 CEAF-GWHAIIVDGHSVEELCKAFGQA---KHQPTAIIAK 239 (616)
T ss_dssp HHHT-TCEEEEEETTCHHHHHHHHHSC---CSSCEEEEEE
T ss_pred HHHc-CCeEEEEcCCCHHHHHHHHHhc---CCCCEEEEEE
Confidence 4554 7876622 3677777777544 5789988653
No 112
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=35.08 E-value=69 Score=27.57 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=46.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHH---HHHHhc-cCCEEEEEcCCCCCCHHHHH
Q 004227 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDL---IRQLAN-EHEILITVEEGSVGGFGSHV 722 (767)
Q Consensus 653 ~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~---i~~~~~-~~~~vVvvEe~~~GGlgs~I 722 (767)
.+|+|.+. +....|..|.+.|++.|+..+.+|+....|-+.+. +.+... .+-..|++.....||+...+
T Consensus 19 ~~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igG~~~~~ 91 (113)
T 3rhb_A 19 NTVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTV 91 (113)
T ss_dssp SSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHH
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEEEcCcHHHH
Confidence 35777665 67799999999999999999999998654422222 333211 22234567665689987543
No 113
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.74 E-value=28 Score=30.60 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=41.6
Q ss_pred cEEEEEechhHHHHH------HHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh--------c-cCCEEEEEcCCCCCCH
Q 004227 654 RVAILGYGSIVQQCV------LAANMLKSQDISVTVADARFCKPLDTDLIRQLA--------N-EHEILITVEEGSVGGF 718 (767)
Q Consensus 654 dvtIva~Gs~v~~al------~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~--------~-~~~~vVvvEe~~~GGl 718 (767)
.|+|.+. +....|. +|.+.|++.||..+.+|+.. .|-..+.+.+.. . .+-..|++++...||+
T Consensus 9 ~V~vy~~-~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~-~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~iGG~ 86 (111)
T 2ct6_A 9 VIRVFIA-SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITM-SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDY 86 (111)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT-CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEEEEH
T ss_pred EEEEEEc-CCCCCcccchhHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhcccccccCCCCCCCEEEECCEEEeCH
Confidence 4666654 4455666 78899999999999999974 221122233332 0 1124677887778998
Q ss_pred HH
Q 004227 719 GS 720 (767)
Q Consensus 719 gs 720 (767)
..
T Consensus 87 d~ 88 (111)
T 2ct6_A 87 DS 88 (111)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 114
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=34.12 E-value=1e+02 Score=30.64 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 665 QQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 665 ~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
..+.++++.|++.|.+++++|+.. .+|.+...+.++..+.||+.=--+-+++...+..++
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~i 106 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAWWMGEPWILKKYI 106 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChHhccCCHHHHHHH
Confidence 344456777888899999999984 678777777777778777765445566666555544
No 115
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=33.09 E-value=65 Score=30.89 Aligned_cols=66 Identities=12% Similarity=0.012 Sum_probs=42.2
Q ss_pred hHHHHHHHHHH-HhcCCCcEEEEEcccCCC--------C--cHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHh
Q 004227 663 IVQQCVLAANM-LKSQDISVTVADARFCKP--------L--DTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTL 728 (767)
Q Consensus 663 ~v~~al~Aa~~-L~~~GI~v~VIdl~slkP--------l--D~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~ 728 (767)
.-..+..+++. |+++|.+++++|+.-+.. . +.+.+.+.+...+.+|+.=--+.+++...+..++..
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~ 94 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLDI 94 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHHh
Confidence 44555566777 888899999999875421 1 233444455566666665444567777777777643
No 116
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=32.45 E-value=2e+02 Score=34.75 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=29.9
Q ss_pred hHHHHHHHhhhcCCCC-EEEEeecCCccCCCCCCCC---ChhHHHHhhcCCCcEEEe
Q 004227 544 RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC---GAFDVTFMSCLPNMVVMA 596 (767)
Q Consensus 544 ra~dQi~~~~a~~~lp-Viiv~~~~Gl~G~dG~TH~---~~~Dla~lr~iPg~~V~~ 596 (767)
.+++.+ +.++..+++ ++++.+..+. .-+|++.- ...++.-+..-.|+.++.
T Consensus 237 ~~~EAl-~~A~~~~L~nli~Vvn~N~~-si~~~v~~~~~~~~~l~~~~~~~G~~~~~ 291 (886)
T 2qtc_A 237 ESKGAI-TIATREKLDNLVFVINCNLQ-RLDGPVTGNGKIINELEGIFEGAGWNVIK 291 (886)
T ss_dssp HHHTTH-HHHHHTTCTTEEEEEEECSB-CSSSBSCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred chHHHH-HHHHHcCCCcEEEEEECCCc-ccCCCccccccccHHHHHHHHhCCCCEEE
Confidence 356664 677888875 8888776664 33555543 244543333335777654
No 117
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=30.94 E-value=43 Score=30.09 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=38.9
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCC
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE 705 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~ 705 (767)
++|.+. ..+..|.+|.+.|+++|+..+++|+.. .|.+.+.+++.++..+
T Consensus 7 i~iY~~-p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 55 (121)
T 3rdw_A 7 VTIYHN-PRCSKSRETLALVEQQGITPQVVLYLE-TPPSVDKLKELLQQLG 55 (121)
T ss_dssp CEEECC-TTCHHHHHHHHHHHTTTCCCEEECTTT-SCCCHHHHHHHHHHTT
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCcHHHHHHHHHhcC
Confidence 454443 567899999999999999999999875 6778888888776554
No 118
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=30.93 E-value=56 Score=29.27 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=38.0
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~ 704 (767)
++|.+. ..+..|.+|.+.|+++|+..+++|+.. .|.+.+.+++.++..
T Consensus 5 i~iY~~-~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~ 52 (120)
T 3fz4_A 5 LTFYEY-PKCSTCRRAKAELDDLAWDYDAIDIKK-NPPAASLIRNWLENS 52 (120)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHHTCCEEEEETTT-SCCCHHHHHHHHHHS
T ss_pred EEEEeC-CCChHHHHHHHHHHHcCCceEEEEecc-CchhHHHHHHHHHHc
Confidence 344333 567899999999999999999999874 677888888887654
No 119
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=30.90 E-value=83 Score=24.79 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=41.2
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh--ccCCEEEEEcCCCCCCHHHHHHHHHHh
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA--NEHEILITVEEGSVGGFGSHVCHFLTL 728 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~--~~~~~vVvvEe~~~GGlgs~I~~~l~~ 728 (767)
+++.+. .....|..+...|++.|+....+|+.. .|-..+.+.+.. .... +++++....||+. .|.+++.+
T Consensus 3 i~~y~~-~~C~~C~~~~~~l~~~~i~~~~~~i~~-~~~~~~~~~~~~~~~~vP-~l~~~g~~i~g~~-~i~~~~~~ 74 (82)
T 1fov_A 3 VEIYTK-ETCPYCHRAKALLSSKGVSFQELPIDG-NAAKREEMIKRSGRTTVP-QIFIDAQHIGGYD-DLYALDAR 74 (82)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHHTCCCEEEECTT-CSHHHHHHHHHHSSCCSC-EEEETTEEEESHH-HHHHHHHT
T ss_pred EEEEEC-CCChhHHHHHHHHHHCCCCcEEEECCC-CHHHHHHHHHHhCCCCcC-EEEECCEEEeCHH-HHHHHHHC
Confidence 455442 456889999999988899999999863 121112233322 2334 4455544578874 45555443
No 120
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=30.38 E-value=1.7e+02 Score=30.91 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEE-EcCCcccCcchHHHHHHHHH---------cCCCEEEEEECCCC
Q 004227 258 SISAGLGMAVARDILGKNNNVISV-IGDGAMTAGQAYEAMNNAGF---------LDANLIVVLNDNKQ 315 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~v-iGDGal~eG~~~EAln~A~~---------~~~nli~Iv~dN~~ 315 (767)
.+++|.|+|++ | -+.++++ .+|... ..++.+.+.+. .++|+++++.. +.
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~ 132 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GA 132 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SC
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cC
Confidence 46677777764 3 3444443 888873 68898876542 67999999984 63
No 121
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=29.07 E-value=72 Score=32.30 Aligned_cols=64 Identities=17% Similarity=0.027 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcccCCCCc--------HHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHh
Q 004227 665 QQCVLAANMLKSQDISVTVADARFCKPLD--------TDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTL 728 (767)
Q Consensus 665 ~~al~Aa~~L~~~GI~v~VIdl~slkPlD--------~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~ 728 (767)
..+..+++.+++.|++++++|+.-+..++ .+.+.+.+...+.||++=--+.+++...+..+|-.
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHH
Confidence 44555677788789999999998753111 34455556666766666544667777777777653
No 122
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=28.76 E-value=69 Score=29.28 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=39.6
Q ss_pred cCceeEeecCCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCC-cHHHHHHHh
Q 004227 643 IGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPL-DTDLIRQLA 701 (767)
Q Consensus 643 igk~~vl~eG~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPl-D~e~i~~~~ 701 (767)
+|++..+.+..++++||-|+.+.-.+..++.|.+.|.++.++-.|+-.-+ -.+.++++.
T Consensus 9 ~G~~~~~~~~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~~~~~~~~~el~~l~ 68 (142)
T 3lyu_A 9 LGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEKAV 68 (142)
T ss_dssp CSCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEGGGCCSHHHHHTTS
T ss_pred CCCCccCCCCCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHHHH
Confidence 34443333356899999999999999999988888888888844443322 234555443
No 123
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=27.40 E-value=92 Score=25.38 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=39.8
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh--ccCCEEEEEcCCCCCCHHH
Q 004227 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA--NEHEILITVEEGSVGGFGS 720 (767)
Q Consensus 654 dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~--~~~~~vVvvEe~~~GGlgs 720 (767)
.+++.+. .....|..+...|++.|+..+.+|+..- |-..+.+.+.. .... +++++....+|+..
T Consensus 7 ~v~ly~~-~~C~~C~~~~~~L~~~~i~~~~~di~~~-~~~~~~l~~~~~~~~vP-~l~~~g~~i~g~~~ 72 (92)
T 2khp_A 7 DVIIYTR-PGCPYCARAKALLARKGAEFNEIDASAT-PELRAEMQERSGRNTFP-QIFIGSVHVGGCDD 72 (92)
T ss_dssp CEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEESTTS-HHHHHHHHHHHTSSCCC-EEEETTEEEESHHH
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHhCCCCcC-EEEECCEEEcCHHH
Confidence 3555543 5678999999999999999999998631 11122333332 2334 45555445788764
No 124
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=26.87 E-value=1.4e+02 Score=36.19 Aligned_cols=109 Identities=11% Similarity=-0.026 Sum_probs=61.5
Q ss_pred EeccccHHHHHHHHHHHHhc----C-----C--eeEEee-chhH-H-HhHHHHHHHhhhcCCCC---EEEEeecCCccCC
Q 004227 510 FDVGIAEQHAVTFAAGLASE----G-----V--KPFCAI-YSSF-L-QRGYDQVVHDVDLQKLP---VRFAMDRAGLVGA 572 (767)
Q Consensus 510 ~d~GIaE~~~vg~AaGlA~~----G-----~--rP~~~t-ys~F-l-~ra~dQi~~~~a~~~lp---Viiv~~~~Gl~G~ 572 (767)
++.+..++. +.+|.|+|++ | . .+++.+ -..| . -.++|.+ |.++..++| +++++..-++ |-
T Consensus 318 ~~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Eal-n~A~~~~lp~gg~I~vv~nN~~-~i 394 (933)
T 2jgd_A 318 FNPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETL-NMSKARGYEVGGTVRIVINNQV-GF 394 (933)
T ss_dssp CCCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHH-HHTTSTTTCCSCCEEEEEECC----
T ss_pred ccCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHH-HHhhccCCCCCceEEEEEeCCc-cc
Confidence 455555553 6777777775 2 1 334433 3444 2 2456654 788899999 7777765553 32
Q ss_pred CC-CCC-----CChhHHHHhhcCCCcEEEecCCHHHHHHHHHHHHh---hCCCCEEEEe
Q 004227 573 DG-PTH-----CGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAV---IDDRPSCFRF 622 (767)
Q Consensus 573 dG-~TH-----~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~~A~~---~~~~P~~irl 622 (767)
.+ ++. ....+++-.-.+|.+.| .--|+.++..+++.|.+ ..++|++|-.
T Consensus 395 st~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe~ 452 (933)
T 2jgd_A 395 TTSNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFIDL 452 (933)
T ss_dssp ------------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCCCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 23 222 22334433334565544 67788889999888874 3467988754
No 125
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=26.79 E-value=91 Score=30.90 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHhcC-CCcEEEEEcccCCC---------------------CcHHHHHHHhccCCEEEEEcCCCCCCHH
Q 004227 662 SIVQQCVLAANMLKSQ-DISVTVADARFCKP---------------------LDTDLIRQLANEHEILITVEEGSVGGFG 719 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~-GI~v~VIdl~slkP---------------------lD~e~i~~~~~~~~~vVvvEe~~~GGlg 719 (767)
.....+..+++.|++. |.+++++|+.-+.+ -|.+.+.+.+...+.||+.=--+.+++.
T Consensus 16 ~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p 95 (242)
T 1sqs_A 16 KTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVS 95 (242)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCC
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCC
Confidence 3345555667778777 99999999875421 2334454555666777766544568888
Q ss_pred HHHHHHHHh
Q 004227 720 SHVCHFLTL 728 (767)
Q Consensus 720 s~I~~~l~~ 728 (767)
+.+..++-.
T Consensus 96 ~~lK~~iDr 104 (242)
T 1sqs_A 96 VDTKNFIER 104 (242)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777754
No 126
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=26.64 E-value=48 Score=29.20 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=37.3
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCC
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE 705 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~ 705 (767)
++|.+. +.+..|.+|.+.|++.||..+++|+.. .|++.+.+++.++..+
T Consensus 2 i~iY~~-~~C~~C~kak~~L~~~gi~~~~~di~~-~~~~~~~l~~~~~~~g 50 (114)
T 1rw1_A 2 YVLYGI-KACDTMKKARTWLDEHKVAYDFHDYKA-VGIDREHLRRWCAEHG 50 (114)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHTTCCEEEEEHHH-HCCCHHHHHHHHHHHC
T ss_pred EEEEEC-CCChHHHHHHHHHHHCCCceEEEeecC-CCCCHHHHHHHHHhCC
Confidence 444443 567899999999999999999999863 4667788777765433
No 127
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=26.24 E-value=1.2e+02 Score=29.78 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=37.3
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEE
Q 004227 652 GDRVAILGYGSIV----QQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILIT 709 (767)
Q Consensus 652 G~dvtIva~Gs~v----~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVv 709 (767)
|++|++|.|++.. .....+.+.|++.|+++.++++.. -+.+.+.+.+++.+.|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~---~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT---ESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT---SCHHHHHHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC---CChHHHHHHHHhCCEEEE
Confidence 6789999988763 244556666777899998888765 244444455556666654
No 128
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=25.78 E-value=1e+02 Score=27.42 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhcc
Q 004227 662 SIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE 703 (767)
Q Consensus 662 s~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~ 703 (767)
+.+..|.+|.+.|++.|+..+++|+.. .|.+.+.+.++++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~el~~~l~~ 48 (120)
T 3l78_A 8 PSCTSCRKARAWLNRHDVVFQEHNIMT-SPLSRDELLKILSY 48 (120)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCcHHHHHHHHhh
Confidence 567899999999999999999999864 57788888877653
No 129
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=25.40 E-value=2.7e+02 Score=28.90 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEE-EcCCcccCcchHHHHHH-HHH--------cCCCEEEEEE
Q 004227 258 SISAGLGMAVARDILGKNNNVISV-IGDGAMTAGQAYEAMNN-AGF--------LDANLIVVLN 311 (767)
Q Consensus 258 ~ls~A~G~AlA~kl~g~~~~Vv~v-iGDGal~eG~~~EAln~-A~~--------~~~nli~Iv~ 311 (767)
.++.|.|+|++ | -+.++++ .++.. + ..+|.+.+ ++. .+.|+++++.
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 118 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP 118 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc
Confidence 36677777775 3 2444444 88886 3 68898854 443 5799999887
No 130
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=25.32 E-value=1.4e+02 Score=26.48 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=24.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEc
Q 004227 652 GDRVAILGYGSIVQQCVLAANMLKSQDISVTVADA 686 (767)
Q Consensus 652 G~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl 686 (767)
+..++|+++|..- ...++.|.++|.++.++|.
T Consensus 6 ~~~v~I~G~G~iG---~~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 6 RYEYIVIGSEAAG---VGLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp CCSEEEECCSHHH---HHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEECCCHHH---HHHHHHHHHCCCeEEEEEC
Confidence 3578999998743 3456778888999999985
No 131
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=25.29 E-value=20 Score=32.74 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=30.4
Q ss_pred eecCCcEEEEEechhHH--HHHHHHHHHhcCCCcEEEEEcc
Q 004227 649 LMEGDRVAILGYGSIVQ--QCVLAANMLKSQDISVTVADAR 687 (767)
Q Consensus 649 l~eG~dvtIva~Gs~v~--~al~Aa~~L~~~GI~v~VIdl~ 687 (767)
+.++.|++||++|.... .--+..+.|++.||.+++.|-+
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 45567999999998774 3455667889999999999843
No 132
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=25.14 E-value=1.8e+02 Score=25.09 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=44.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHH----HHHHHh-ccCCEEEEEcCCCCCCHHHH
Q 004227 652 GDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTD----LIRQLA-NEHEILITVEEGSVGGFGSH 721 (767)
Q Consensus 652 G~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e----~i~~~~-~~~~~vVvvEe~~~GGlgs~ 721 (767)
..+|+|.+. +....|..|.+.|++.|+..+++|+.... |.+ .+.+.. ..+=..|.+.....||+...
T Consensus 16 ~~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l 87 (114)
T 3h8q_A 16 RSRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQT 87 (114)
T ss_dssp HCSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHH
Confidence 346777665 67899999999999999999999986431 222 233332 22223566765568998643
No 133
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=24.84 E-value=1.4e+02 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=25.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcc
Q 004227 653 DRVAILGYGSIVQQCVLAANMLKSQDISVTVADAR 687 (767)
Q Consensus 653 ~dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~ 687 (767)
..++|+++|.+... .++.|++.|.++.++|..
T Consensus 8 ~~viIiG~G~~G~~---la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSL---LGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHTTCCEEEEESC
T ss_pred CCEEEECcCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 36999999987654 556777889999999853
No 134
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=23.33 E-value=60 Score=28.87 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=38.4
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCC
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHE 705 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~ 705 (767)
++|.+. +.+..|.+|.+.|++.|+..+++|+.. .|.+.+.+++.++..+
T Consensus 7 i~iY~~-~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~~l~~~~~~~g 55 (120)
T 2kok_A 7 VTIYGI-KNCDTMKKARIWLEDHGIDYTFHDYKK-EGLDAETLDRFLKTVP 55 (120)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHHTCCEEEEEHHH-HCCCHHHHHHHHHHSC
T ss_pred EEEEEC-CCChHHHHHHHHHHHcCCcEEEEeeeC-CCCCHHHHHHHHHHcC
Confidence 555554 566899999999999999999999863 4777888887776554
No 135
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=23.19 E-value=49 Score=30.09 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHh---------ccCCEEEEEcCCCCCCHHHH
Q 004227 666 QCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLA---------NEHEILITVEEGSVGGFGSH 721 (767)
Q Consensus 666 ~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~---------~~~~~vVvvEe~~~GGlgs~ 721 (767)
.|..|...|+..||..+.+|+.. .|--.+.+.+.. ..+-..|++++...||+-.-
T Consensus 18 ~c~~aK~lL~~kgV~feEidI~~-d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~ 81 (121)
T 1u6t_A 18 KQQDVLGFLEANKIGFEEKDIAA-NEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAF 81 (121)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHH
T ss_pred HHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHH
Confidence 46788889999999999999973 222222333332 12345788898889998753
No 136
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=22.81 E-value=1.4e+02 Score=27.69 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=30.9
Q ss_pred EEEechhH----HHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEc
Q 004227 657 ILGYGSIV----QQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVE 711 (767)
Q Consensus 657 Iva~Gs~v----~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvE 711 (767)
+|.|+|+. ..|...++.|++.|++++++|+... |.+.+...+...+.||+.=
T Consensus 4 ~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~d~ii~Gs 59 (161)
T 3hly_A 4 LIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV---DPQELIEAVSSARGIVLGT 59 (161)
T ss_dssp EEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC---CHHHHHHHHHHCSEEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC---CHHHHHHHHHhCCEEEEEc
Confidence 34455544 4555556667778999999998743 3343433334456666553
No 137
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=22.35 E-value=1.3e+02 Score=29.08 Aligned_cols=60 Identities=17% Similarity=0.039 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHH
Q 004227 666 QCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLT 727 (767)
Q Consensus 666 ~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~ 727 (767)
.+..+++.+++.|.+++++|+.. +.|.+.+.+.+...+.||+.=--+-+++-..+..++-
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHH
Confidence 44455667777799999999974 5677777777777777766654456777777666654
No 138
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=22.29 E-value=1.6e+02 Score=25.35 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=41.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCc---EEEEEcccCCC--CcHHHHHHHh--ccCCEEEEEcCCCCCCHHH
Q 004227 653 DRVAILGYGSIVQQCVLAANMLKSQDIS---VTVADARFCKP--LDTDLIRQLA--NEHEILITVEEGSVGGFGS 720 (767)
Q Consensus 653 ~dvtIva~Gs~v~~al~Aa~~L~~~GI~---v~VIdl~slkP--lD~e~i~~~~--~~~~~vVvvEe~~~GGlgs 720 (767)
..+++.+. +....|..+...|++.|+. ...+|+..-.. -..+.+.+.. .... .++++....||+..
T Consensus 19 ~~vv~f~~-~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP-~v~i~g~~igg~~~ 91 (114)
T 2hze_A 19 NKVTIFVK-YTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVP-RIFFGKTSIGGYSD 91 (114)
T ss_dssp TCEEEEEC-TTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSC-EEEETTEEEESHHH
T ss_pred CCEEEEEe-CCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcC-EEEECCEEEeCcHH
Confidence 35666654 6778999999999999999 99999864310 0112343333 2334 45565445788854
No 139
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=21.76 E-value=2e+02 Score=31.24 Aligned_cols=71 Identities=15% Similarity=-0.002 Sum_probs=45.1
Q ss_pred EEEEechhH----HHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 656 AILGYGSIV----QQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 656 tIva~Gs~v----~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
++|.|++|. ..|...++.|+++|+.+.++++.-+..-|...+.+.+.+.+.+|+-=-.+.|++-..+..+|
T Consensus 268 v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l 342 (410)
T 4dik_A 268 VTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTL 342 (410)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHH
T ss_pred eeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHH
Confidence 345566654 45566677788899999988888777667666655555566666544333466555554444
No 140
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=21.76 E-value=1e+02 Score=25.09 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=42.4
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcH----HHHHHHh-ccCCEEEEEcCCCCCCHHHH
Q 004227 654 RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDT----DLIRQLA-NEHEILITVEEGSVGGFGSH 721 (767)
Q Consensus 654 dvtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~----e~i~~~~-~~~~~vVvvEe~~~GGlgs~ 721 (767)
+++|.+. .....|..|...|++.|+..+.+|+....+-+. +.+.+.. ...-.++++++...+|+...
T Consensus 13 ~v~ly~~-~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~~~ 84 (92)
T 3ic4_A 13 EVLMYGL-STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYNEE 84 (92)
T ss_dssp SSEEEEC-TTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCCHH
T ss_pred eEEEEEC-CCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCCHH
Confidence 4666553 567899999999999999999999986654222 2232222 12334555555456887443
No 141
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=21.72 E-value=1.3e+02 Score=25.05 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=40.6
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCc---EEEEEcccCC--CCcHHHHHHHhc--cCCEEEEEcCCCCCCHH
Q 004227 654 RVAILGYGSIVQQCVLAANMLKSQDIS---VTVADARFCK--PLDTDLIRQLAN--EHEILITVEEGSVGGFG 719 (767)
Q Consensus 654 dvtIva~Gs~v~~al~Aa~~L~~~GI~---v~VIdl~slk--PlD~e~i~~~~~--~~~~vVvvEe~~~GGlg 719 (767)
.+++.+. +....|..+...|++.+++ +.++|+..-. |--.+.+.+... ... .++++....||+.
T Consensus 13 ~v~~f~~-~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP-~i~~~g~~i~g~~ 83 (105)
T 1kte_A 13 KVVVFIK-PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVP-RVFIGKECIGGCT 83 (105)
T ss_dssp CEEEEEC-SSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSC-EEEETTEEEESHH
T ss_pred CEEEEEc-CCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcC-eEEECCEEEeccH
Confidence 4666653 6778999999999999999 9999986431 100123433332 334 4566654578875
No 142
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.52 E-value=1.2e+02 Score=26.85 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHhcCCCcEEEEEcccC
Q 004227 661 GSIVQQCVLAANMLKSQDISVTVADARFC 689 (767)
Q Consensus 661 Gs~v~~al~Aa~~L~~~GI~v~VIdl~sl 689 (767)
|+.-..|...++.|++.|++++++|+...
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 38 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDV 38 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGC
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhC
Confidence 44445555666677778999999998744
No 143
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=21.22 E-value=1.1e+02 Score=27.35 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=37.9
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhccC
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH 704 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~~ 704 (767)
++|.+ -..+..|.+|.+.|+++|+..+++|+.. .|.+.+.+.+.++..
T Consensus 6 i~iY~-~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~ 53 (120)
T 3gkx_A 6 TLFLQ-YPACSTCQKAKKWLIENNIEYTNRLIVD-DNPTVEELKAWIPLS 53 (120)
T ss_dssp CEEEE-CTTCHHHHHHHHHHHHTTCCCEEEETTT-TCCCHHHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHcCCceEEEeccc-CcCCHHHHHHHHHHc
Confidence 44444 3567899999999999999999999874 577888888776643
No 144
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=21.16 E-value=1.5e+02 Score=28.59 Aligned_cols=63 Identities=2% Similarity=0.017 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccCCCCcH----------HHHHHHhccCCEEEEEcCCCCCCHHHHHHHHH
Q 004227 664 VQQCVLAANMLKSQDISVTVADARFCKPLDT----------DLIRQLANEHEILITVEEGSVGGFGSHVCHFL 726 (767)
Q Consensus 664 v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~----------e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l 726 (767)
.....+++..+.++|++++++|+.-+-.++. +.+++.++..+.+|++=--+.|++...+..+|
T Consensus 18 ~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s~pg~LKn~i 90 (190)
T 3u7r_A 18 NHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNRSYPGMIKNAI 90 (190)
T ss_dssp HHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTTBCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcccCCHHHHHHH
Confidence 3444445555556789999999876522322 23455666677666655444555555444433
No 145
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=21.00 E-value=1.7e+02 Score=26.28 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=36.9
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHHHhcc
Q 004227 655 VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANE 703 (767)
Q Consensus 655 vtIva~Gs~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~~~~~ 703 (767)
++|.+ -+.+..|.+|.+.|++.|+..+++|+.. .|.+.+.+.+.++.
T Consensus 3 i~lY~-~~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~el~~~l~~ 49 (132)
T 1z3e_A 3 VTLYT-SPSCTSCRKARAWLEEHEIPFVERNIFS-EPLSIDEIKQILRM 49 (132)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHT
T ss_pred EEEEe-CCCChHHHHHHHHHHHcCCceEEEEccC-CCccHHHHHHHHHH
Confidence 44444 3667899999999999999999999874 56777888877654
No 146
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=20.80 E-value=1.4e+02 Score=28.88 Aligned_cols=63 Identities=13% Similarity=0.028 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCcEEEEEcccCCC---CcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHh
Q 004227 666 QCVLAANMLKSQDISVTVADARFCKP---LDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTL 728 (767)
Q Consensus 666 ~al~Aa~~L~~~GI~v~VIdl~slkP---lD~e~i~~~~~~~~~vVvvEe~~~GGlgs~I~~~l~~ 728 (767)
.+...++.+++.|.+++++|+.-..| -|.+...+.++..+.||+.=--+-+++.+.+..++-.
T Consensus 18 l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 18 VHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHH
Confidence 34445566777799999999987655 4555566666677777766544567777777777654
No 147
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=20.61 E-value=2.5e+02 Score=25.71 Aligned_cols=58 Identities=5% Similarity=0.038 Sum_probs=39.6
Q ss_pred cEEEEEech-hHHHHHHHHHHHhcCCCcEEEEEcccCCCCcHHHHHH-HhccCCEEEEEcC
Q 004227 654 RVAILGYGS-IVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQ-LANEHEILITVEE 712 (767)
Q Consensus 654 dvtIva~Gs-~v~~al~Aa~~L~~~GI~v~VIdl~slkPlD~e~i~~-~~~~~~~vVvvEe 712 (767)
++.||..+. ....|.+..+.|++.|+.+++.+.++=.+|-.. |++ ..++...+++|-+
T Consensus 10 Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~k-IR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 10 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQA-LEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp TEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHH-HHHHHHHTCSEEEEECH
T ss_pred eEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHH-HHHHHHcCCCEEEEEec
Confidence 566666554 458999999999999999998665432444333 443 3567777877753
No 148
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=20.57 E-value=2.9e+02 Score=33.26 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=50.9
Q ss_pred hhHH--HhHHHHHHHhhhcCCCC---EEEEeecCCccCCCCCC-----CCChhHHHHhhcCCCcEEEecCCHHHHHHHHH
Q 004227 539 SSFL--QRGYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPT-----HCGAFDVTFMSCLPNMVVMAPSDEAELMHMVA 608 (767)
Q Consensus 539 s~Fl--~ra~dQi~~~~a~~~lp---Viiv~~~~Gl~G~dG~T-----H~~~~Dla~lr~iPg~~V~~Psd~~E~~~~l~ 608 (767)
+.|. ...+|. ++.++..++| +++++..-++ |..+++ .....|.+-.-.+|.+.| .=.|+.++..+++
T Consensus 287 Ga~~~eG~v~Ea-ln~A~~~~lp~g~vi~iv~NN~~-g~st~~~~~~s~~~~~~~a~a~G~p~~~V-dG~D~~av~~a~~ 363 (868)
T 2yic_A 287 AAFAGQGVVAET-LNLALLRGYRTGGTIHIVVNNQI-GFTTAPTDSRSSEYCTDVAKMIGAPIFHV-NGDDPEACAWVAR 363 (868)
T ss_dssp HHHHHCHHHHHH-HTTTTCTTTCCSCCEEEEEECSC-BTTBCHHHHCSSSSTTGGGGGGTCCEEEE-ETTCHHHHHHHHH
T ss_pred cccccccHHHHH-HHHHHhcCCCCCCeEEEEEcCCc-ccccCccccccccCHHHHHHhCCCcEEEE-eCCCHHHHHHHHH
Confidence 4453 244555 3777889998 8888876654 322322 122345444444665544 5568999999999
Q ss_pred HHHh---hCCCCEEEEe
Q 004227 609 TAAV---IDDRPSCFRF 622 (767)
Q Consensus 609 ~A~~---~~~~P~~irl 622 (767)
.|++ ..++|++|-+
T Consensus 364 ~A~~~ar~~~~PvlIe~ 380 (868)
T 2yic_A 364 LAVDFRQAFKKDVVIDM 380 (868)
T ss_dssp HHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHhCCCCEEEEE
Confidence 8875 3478998855
No 149
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=20.50 E-value=1.5e+02 Score=27.83 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=40.7
Q ss_pred chhHHHHHHHHHHHhcC------CCcEEEEEccc--CCCCc--------------------HHHHHHHhccCCEEEEEcC
Q 004227 661 GSIVQQCVLAANMLKSQ------DISVTVADARF--CKPLD--------------------TDLIRQLANEHEILITVEE 712 (767)
Q Consensus 661 Gs~v~~al~Aa~~L~~~------GI~v~VIdl~s--lkPlD--------------------~e~i~~~~~~~~~vVvvEe 712 (767)
|..-..+...++.|++. |.+++++|+.- +.|++ .+.+.+.+...+.||+.=-
T Consensus 14 ~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP 93 (191)
T 1t0i_A 14 RVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTP 93 (191)
T ss_dssp CSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEec
Confidence 33345555566777765 78999999874 32221 1234444555666666554
Q ss_pred CCCCCHHHHHHHHHHh
Q 004227 713 GSVGGFGSHVCHFLTL 728 (767)
Q Consensus 713 ~~~GGlgs~I~~~l~~ 728 (767)
-+.+++.+.+..++-.
T Consensus 94 ~y~~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 94 QYNWGYPAALKNAIDR 109 (191)
T ss_dssp CBTTBCCHHHHHHHHT
T ss_pred eECCCCCHHHHHHHHH
Confidence 4567777777777754
No 150
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=20.40 E-value=91 Score=29.77 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHcC--CCCeEEEEEcCCcccCcchHHHHHHHHHcCCCEEEEEEC
Q 004227 257 TSISAGLGMAVARDILG--KNNNVISVIGDGAMTAGQAYEAMNNAGFLDANLIVVLND 312 (767)
Q Consensus 257 ~~ls~A~G~AlA~kl~g--~~~~Vv~viGDGal~eG~~~EAln~A~~~~~nli~Iv~d 312 (767)
+.+..|+-.|+.. +.. ...++++++.||.-+.+...+++..+...+.++.+|---
T Consensus 92 T~l~~al~~a~~~-l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig 148 (218)
T 3ibs_A 92 TAIGEAINLATRS-FTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVG 148 (218)
T ss_dssp CCHHHHHHHHHTT-SCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEES
T ss_pred CcHHHHHHHHHHH-HhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEec
Confidence 3455565555422 222 246799999999999886666666666555555555443
Done!