Query 004228
Match_columns 767
No_of_seqs 284 out of 1704
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 19:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 4E-103 8E-108 910.2 45.8 589 21-683 3-656 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 6.6E-61 1.4E-65 515.4 26.1 287 174-460 1-289 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 3.9E-39 8.6E-44 335.3 18.1 178 23-202 2-239 (240)
4 KOG0447 Dynamin-like GTP bindi 100.0 8.9E-27 1.9E-31 254.8 27.1 355 21-396 280-724 (980)
5 smart00302 GED Dynamin GTPase 99.9 4.1E-26 8.9E-31 204.2 12.2 91 590-680 2-92 (92)
6 PF02212 GED: Dynamin GTPase e 99.9 1.6E-22 3.4E-27 181.3 11.7 92 589-680 1-92 (92)
7 COG0218 Predicted GTPase [Gene 99.5 2.2E-13 4.8E-18 136.8 13.1 123 45-172 22-152 (200)
8 COG0699 Predicted GTPases (dyn 99.5 3.3E-11 7.2E-16 139.5 30.3 442 132-675 97-542 (546)
9 PF00350 Dynamin_N: Dynamin fa 99.4 5.3E-13 1.1E-17 130.9 10.7 116 50-165 1-168 (168)
10 COG1160 Predicted GTPases [Gen 98.8 3.2E-09 7E-14 118.2 4.6 162 22-198 150-334 (444)
11 COG0486 ThdF Predicted GTPase 98.7 5.3E-07 1.1E-11 101.0 16.8 169 22-213 191-374 (454)
12 PRK00454 engB GTP-binding prot 98.5 8.2E-07 1.8E-11 89.0 11.3 136 29-171 4-151 (196)
13 TIGR00436 era GTP-binding prot 98.4 3.4E-06 7.3E-11 90.1 14.9 116 49-170 2-122 (270)
14 TIGR03598 GTPase_YsxC ribosome 98.4 1E-06 2.3E-11 87.8 9.8 119 45-170 16-144 (179)
15 TIGR03156 GTP_HflX GTP-binding 98.4 1.3E-06 2.8E-11 96.9 11.4 123 45-169 187-315 (351)
16 PF01926 MMR_HSR1: 50S ribosom 98.4 1.7E-06 3.7E-11 79.9 9.7 110 49-164 1-116 (116)
17 cd01878 HflX HflX subfamily. 98.4 2E-06 4.3E-11 87.3 11.1 124 45-170 39-168 (204)
18 PF02421 FeoB_N: Ferrous iron 98.4 2.6E-07 5.7E-12 90.8 4.5 112 49-170 2-120 (156)
19 cd01876 YihA_EngB The YihA (En 98.3 2.2E-06 4.7E-11 82.3 8.9 116 49-171 1-126 (170)
20 PRK11058 GTPase HflX; Provisio 98.3 2.7E-06 5.9E-11 96.7 11.0 122 45-169 195-323 (426)
21 TIGR00450 mnmE_trmE_thdF tRNA 98.3 7.4E-05 1.6E-09 85.5 22.3 143 22-170 178-325 (442)
22 PRK00089 era GTPase Era; Revie 98.3 1.2E-05 2.7E-10 86.5 15.0 116 49-169 7-127 (292)
23 COG1160 Predicted GTPases [Gen 98.2 4.2E-06 9.1E-11 93.7 10.2 114 48-169 4-126 (444)
24 PRK03003 GTP-binding protein D 98.2 1E-05 2.2E-10 93.3 12.6 120 46-169 210-336 (472)
25 cd01853 Toc34_like Toc34-like 98.2 1E-05 2.2E-10 85.7 11.4 126 44-172 28-166 (249)
26 TIGR03594 GTPase_EngA ribosome 98.2 1.6E-05 3.5E-10 90.2 13.8 142 23-168 146-296 (429)
27 cd04163 Era Era subfamily. Er 98.2 1E-05 2.2E-10 77.4 10.3 116 48-169 4-125 (168)
28 PRK09518 bifunctional cytidyla 98.2 2.4E-05 5.2E-10 94.7 15.6 119 46-169 449-575 (712)
29 COG1159 Era GTPase [General fu 98.2 3E-05 6.6E-10 82.8 14.2 162 49-224 8-178 (298)
30 PRK05291 trmE tRNA modificatio 98.2 0.00014 2.9E-09 83.6 20.5 139 24-170 191-336 (449)
31 PRK00093 GTP-binding protein D 98.1 2.6E-05 5.5E-10 88.8 14.2 120 46-169 172-298 (435)
32 cd01852 AIG1 AIG1 (avrRpt2-ind 98.1 1.3E-05 2.8E-10 81.3 10.5 119 49-171 2-132 (196)
33 cd01887 IF2_eIF5B IF2/eIF5B (i 98.1 5.9E-06 1.3E-10 80.2 7.3 113 48-169 1-116 (168)
34 KOG1191 Mitochondrial GTPase [ 98.1 5.7E-05 1.2E-09 85.0 15.8 116 46-173 267-407 (531)
35 COG1084 Predicted GTPase [Gene 98.1 2E-05 4.2E-10 85.0 10.5 136 27-172 149-297 (346)
36 PRK04213 GTP-binding protein; 98.0 2.5E-05 5.3E-10 79.0 10.4 117 45-169 7-144 (201)
37 PRK09866 hypothetical protein; 98.0 0.00076 1.7E-08 79.0 23.6 42 48-89 70-111 (741)
38 PRK03003 GTP-binding protein D 98.0 2.8E-05 6.1E-10 89.7 12.0 120 45-169 36-160 (472)
39 cd00880 Era_like Era (E. coli 98.0 3.2E-05 6.8E-10 72.7 9.9 115 52-171 1-120 (163)
40 TIGR03594 GTPase_EngA ribosome 98.0 3.1E-05 6.7E-10 87.9 10.7 119 49-172 1-124 (429)
41 cd01895 EngA2 EngA2 subfamily. 97.9 5.6E-05 1.2E-09 73.0 10.3 120 47-170 2-128 (174)
42 cd04104 p47_IIGP_like p47 (47- 97.9 8.8E-05 1.9E-09 75.5 12.0 115 48-170 2-122 (197)
43 TIGR00991 3a0901s02IAP34 GTP-b 97.9 0.00011 2.4E-09 79.7 12.3 135 30-170 22-168 (313)
44 cd01897 NOG NOG1 is a nucleola 97.9 6.1E-05 1.3E-09 73.3 9.2 25 48-72 1-25 (168)
45 cd04164 trmE TrmE (MnmE, ThdF, 97.9 8.8E-05 1.9E-09 70.6 10.1 116 49-171 3-123 (157)
46 cd01894 EngA1 EngA1 subfamily. 97.9 4.9E-05 1.1E-09 72.6 8.1 116 51-171 1-121 (157)
47 PRK09518 bifunctional cytidyla 97.8 5.5E-05 1.2E-09 91.6 9.9 119 46-169 274-397 (712)
48 PRK00093 GTP-binding protein D 97.8 9E-05 2E-09 84.4 11.0 118 47-169 1-123 (435)
49 PRK15494 era GTPase Era; Provi 97.8 0.00032 6.8E-09 77.7 14.9 118 48-170 53-175 (339)
50 cd01898 Obg Obg subfamily. Th 97.7 7.6E-05 1.6E-09 72.7 7.7 118 49-171 2-130 (170)
51 cd01868 Rab11_like Rab11-like. 97.7 8.7E-05 1.9E-09 72.1 8.1 111 48-169 4-122 (165)
52 cd00154 Rab Rab family. Rab G 97.7 9.8E-05 2.1E-09 69.9 8.2 28 48-75 1-28 (159)
53 cd01861 Rab6 Rab6 subfamily. 97.7 0.00012 2.6E-09 70.6 8.9 111 49-169 2-119 (161)
54 cd04171 SelB SelB subfamily. 97.7 0.0001 2.2E-09 71.0 8.2 109 49-170 2-119 (164)
55 PRK12298 obgE GTPase CgtA; Rev 97.7 0.00011 2.4E-09 82.7 9.2 59 46-108 158-218 (390)
56 KOG2486 Predicted GTPase [Gene 97.7 4.7E-05 1E-09 80.4 5.5 121 46-171 135-264 (320)
57 PF10662 PduV-EutP: Ethanolami 97.7 0.0001 2.2E-09 71.5 7.4 100 49-169 3-103 (143)
58 cd01866 Rab2 Rab2 subfamily. 97.7 0.00014 3E-09 71.3 8.4 33 47-79 4-36 (168)
59 cd01867 Rab8_Rab10_Rab13_like 97.6 0.00022 4.8E-09 69.8 9.3 28 47-74 3-30 (167)
60 TIGR02528 EutP ethanolamine ut 97.6 0.00019 4.1E-09 68.2 8.5 24 49-72 2-25 (142)
61 PRK15467 ethanolamine utilizat 97.6 0.00043 9.4E-09 68.0 10.9 100 49-169 3-105 (158)
62 cd04159 Arl10_like Arl10-like 97.6 0.00031 6.7E-09 66.6 9.2 25 49-73 1-25 (159)
63 PF04548 AIG1: AIG1 family; I 97.6 7.1E-05 1.5E-09 77.2 4.9 120 49-172 2-133 (212)
64 cd00881 GTP_translation_factor 97.6 0.00018 3.9E-09 70.9 7.6 25 49-73 1-25 (189)
65 cd04142 RRP22 RRP22 subfamily. 97.5 0.00026 5.7E-09 72.2 8.4 24 49-72 2-25 (198)
66 cd04112 Rab26 Rab26 subfamily. 97.5 0.00038 8.3E-09 70.0 8.9 25 49-73 2-26 (191)
67 cd01863 Rab18 Rab18 subfamily. 97.5 0.00051 1.1E-08 66.3 9.5 29 49-77 2-30 (161)
68 cd01879 FeoB Ferrous iron tran 97.5 0.00021 4.5E-09 68.5 6.7 109 52-169 1-115 (158)
69 PRK12299 obgE GTPase CgtA; Rev 97.5 0.00036 7.7E-09 77.2 9.4 117 46-169 157-285 (335)
70 TIGR02729 Obg_CgtA Obg family 97.5 0.00033 7.2E-09 77.2 8.8 118 46-170 156-288 (329)
71 cd04114 Rab30 Rab30 subfamily. 97.5 0.00043 9.4E-09 67.4 8.7 30 46-75 6-35 (169)
72 cd01865 Rab3 Rab3 subfamily. 97.5 0.00037 8.1E-09 68.0 8.2 28 48-75 2-29 (165)
73 TIGR00231 small_GTP small GTP- 97.5 0.00041 9E-09 65.1 8.2 117 48-170 2-123 (161)
74 cd01850 CDC_Septin CDC/Septin. 97.4 0.00049 1.1E-08 74.0 9.5 121 49-171 6-159 (276)
75 TIGR00993 3a0901s04IAP86 chlor 97.4 0.00062 1.3E-08 80.0 10.8 119 49-170 120-251 (763)
76 cd04123 Rab21 Rab21 subfamily. 97.4 0.0006 1.3E-08 65.3 9.2 26 49-74 2-27 (162)
77 PRK12297 obgE GTPase CgtA; Rev 97.4 0.00044 9.6E-09 78.6 9.4 116 46-168 157-287 (424)
78 TIGR00491 aIF-2 translation in 97.4 0.00035 7.6E-09 82.6 8.6 116 45-169 2-135 (590)
79 cd04119 RJL RJL (RabJ-Like) su 97.4 0.00067 1.4E-08 65.4 8.9 27 49-75 2-28 (168)
80 cd01862 Rab7 Rab7 subfamily. 97.4 0.00047 1E-08 67.1 7.9 33 49-81 2-34 (172)
81 smart00175 RAB Rab subfamily o 97.4 0.00061 1.3E-08 65.7 8.3 25 49-73 2-26 (164)
82 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.4 0.00079 1.7E-08 65.5 9.1 27 48-74 3-29 (166)
83 COG3596 Predicted GTPase [Gene 97.4 0.0016 3.4E-08 69.2 11.7 200 46-272 37-251 (296)
84 PF05049 IIGP: Interferon-indu 97.4 0.00022 4.8E-09 79.4 5.5 131 24-167 16-153 (376)
85 cd01864 Rab19 Rab19 subfamily. 97.3 0.00094 2E-08 65.0 9.3 28 47-74 3-30 (165)
86 cd01891 TypA_BipA TypA (tyrosi 97.3 0.00052 1.1E-08 69.2 7.7 109 49-170 4-132 (194)
87 cd01860 Rab5_related Rab5-rela 97.3 0.00075 1.6E-08 65.2 8.4 26 49-74 3-28 (163)
88 cd04106 Rab23_lke Rab23-like s 97.3 0.00061 1.3E-08 65.7 7.6 26 49-74 2-27 (162)
89 cd04113 Rab4 Rab4 subfamily. 97.3 0.00094 2E-08 64.6 8.8 31 49-79 2-32 (161)
90 cd04156 ARLTS1 ARLTS1 subfamil 97.3 0.0031 6.8E-08 60.7 12.3 24 49-72 1-24 (160)
91 cd04118 Rab24 Rab24 subfamily. 97.3 0.00064 1.4E-08 68.2 7.8 25 49-73 2-26 (193)
92 PRK09554 feoB ferrous iron tra 97.3 0.00078 1.7E-08 82.0 9.9 114 48-170 4-127 (772)
93 PRK12296 obgE GTPase CgtA; Rev 97.3 0.00062 1.3E-08 78.7 8.4 57 46-107 158-216 (500)
94 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.3 0.0012 2.5E-08 66.1 9.4 25 49-73 5-29 (183)
95 cd04157 Arl6 Arl6 subfamily. 97.3 0.0013 2.9E-08 63.3 9.3 24 49-72 1-24 (162)
96 cd04139 RalA_RalB RalA/RalB su 97.2 0.00052 1.1E-08 66.1 5.8 25 49-73 2-26 (164)
97 cd04165 GTPBP1_like GTPBP1-lik 97.2 0.0006 1.3E-08 71.1 6.6 39 132-171 116-154 (224)
98 cd04145 M_R_Ras_like M-Ras/R-R 97.2 0.0012 2.7E-08 63.6 8.4 25 49-73 4-28 (164)
99 cd01881 Obg_like The Obg-like 97.2 0.00056 1.2E-08 66.7 6.0 53 52-107 1-54 (176)
100 cd01858 NGP_1 NGP-1. Autoanti 97.2 0.0007 1.5E-08 66.2 6.6 74 24-106 82-156 (157)
101 cd00876 Ras Ras family. The R 97.2 0.00099 2.1E-08 63.7 7.5 24 49-72 1-24 (160)
102 cd04122 Rab14 Rab14 subfamily. 97.2 0.0018 3.9E-08 63.2 9.2 30 48-77 3-32 (166)
103 smart00173 RAS Ras subfamily o 97.2 0.0012 2.7E-08 63.8 7.9 25 49-73 2-26 (164)
104 cd04146 RERG_RasL11_like RERG/ 97.2 0.00068 1.5E-08 66.0 5.9 109 49-168 1-119 (165)
105 cd00882 Ras_like_GTPase Ras-li 97.1 0.0011 2.4E-08 61.1 7.0 111 52-172 1-119 (157)
106 cd04127 Rab27A Rab27a subfamil 97.1 0.0018 3.8E-08 63.9 8.7 29 47-75 4-32 (180)
107 cd04136 Rap_like Rap-like subf 97.1 0.0014 3E-08 63.2 7.7 26 48-73 2-27 (163)
108 cd00878 Arf_Arl Arf (ADP-ribos 97.1 0.0017 3.8E-08 62.5 8.1 24 49-72 1-24 (158)
109 cd04138 H_N_K_Ras_like H-Ras/N 97.1 0.0017 3.7E-08 62.2 7.9 27 48-74 2-28 (162)
110 cd01884 EF_Tu EF-Tu subfamily. 97.0 0.0022 4.7E-08 65.5 8.4 108 49-169 4-132 (195)
111 PF00009 GTP_EFTU: Elongation 97.0 0.00053 1.1E-08 69.0 3.8 112 48-168 4-135 (188)
112 cd01890 LepA LepA subfamily. 97.0 0.0013 2.9E-08 64.7 6.5 22 49-70 2-23 (179)
113 CHL00071 tufA elongation facto 97.0 0.0013 2.9E-08 74.6 7.3 110 48-170 13-143 (409)
114 cd04111 Rab39 Rab39 subfamily. 97.0 0.0027 5.8E-08 65.4 8.9 28 48-75 3-30 (211)
115 cd04154 Arl2 Arl2 subfamily. 97.0 0.004 8.8E-08 61.3 9.8 27 46-72 13-39 (173)
116 cd04169 RF3 RF3 subfamily. Pe 97.0 0.0019 4.2E-08 69.1 8.0 21 49-69 4-24 (267)
117 cd04162 Arl9_Arfrp2_like Arl9/ 97.0 0.0051 1.1E-07 60.4 10.4 24 49-72 1-24 (164)
118 CHL00189 infB translation init 97.0 0.0015 3.2E-08 78.9 7.8 115 46-169 243-361 (742)
119 cd01893 Miro1 Miro1 subfamily. 97.0 0.0016 3.5E-08 63.7 6.8 24 49-72 2-25 (166)
120 PRK05306 infB translation init 97.0 0.0016 3.6E-08 79.1 8.0 112 46-169 289-403 (787)
121 cd04160 Arfrp1 Arfrp1 subfamil 97.0 0.0089 1.9E-07 58.0 11.8 21 50-70 2-22 (167)
122 cd04124 RabL2 RabL2 subfamily. 97.0 0.0021 4.6E-08 62.6 7.4 27 49-75 2-28 (161)
123 cd00879 Sar1 Sar1 subfamily. 96.9 0.0042 9.1E-08 62.0 9.5 28 45-72 17-44 (190)
124 cd04115 Rab33B_Rab33A Rab33B/R 96.9 0.0026 5.7E-08 62.5 7.8 25 48-72 3-27 (170)
125 cd01849 YlqF_related_GTPase Yl 96.9 0.00098 2.1E-08 65.0 4.8 56 45-106 98-154 (155)
126 cd04101 RabL4 RabL4 (Rab-like4 96.9 0.0036 7.8E-08 60.6 8.6 21 49-69 2-22 (164)
127 cd04147 Ras_dva Ras-dva subfam 96.9 0.002 4.3E-08 65.3 6.8 26 49-74 1-26 (198)
128 cd04125 RabA_like RabA-like su 96.9 0.0041 9E-08 62.2 9.0 27 48-74 1-27 (188)
129 smart00178 SAR Sar1p-like memb 96.9 0.0021 4.5E-08 64.5 6.8 26 47-72 17-42 (184)
130 TIGR00487 IF-2 translation ini 96.9 0.0021 4.5E-08 76.2 7.8 112 46-169 86-201 (587)
131 cd04107 Rab32_Rab38 Rab38/Rab3 96.9 0.004 8.7E-08 63.2 8.9 26 49-74 2-27 (201)
132 cd01892 Miro2 Miro2 subfamily. 96.9 0.0039 8.4E-08 61.6 8.4 26 48-73 5-30 (169)
133 cd01889 SelB_euk SelB subfamil 96.9 0.0025 5.3E-08 64.2 7.1 22 49-70 2-23 (192)
134 cd04175 Rap1 Rap1 subgroup. T 96.8 0.0034 7.3E-08 61.0 7.8 27 49-75 3-29 (164)
135 cd04116 Rab9 Rab9 subfamily. 96.8 0.0042 9E-08 60.7 8.4 29 47-75 5-33 (170)
136 cd04170 EF-G_bact Elongation f 96.8 0.0022 4.8E-08 68.4 6.9 21 50-70 2-22 (268)
137 cd04166 CysN_ATPS CysN_ATPS su 96.8 0.0018 3.8E-08 66.5 5.9 23 49-71 1-23 (208)
138 cd04110 Rab35 Rab35 subfamily. 96.8 0.0049 1.1E-07 62.6 8.9 26 47-72 6-31 (199)
139 cd04168 TetM_like Tet(M)-like 96.8 0.0047 1E-07 65.0 8.9 110 50-169 2-130 (237)
140 TIGR00475 selB selenocysteine- 96.8 0.0032 6.8E-08 74.7 8.5 108 49-170 2-118 (581)
141 cd01855 YqeH YqeH. YqeH is an 96.8 0.0024 5.2E-08 64.4 6.5 71 22-106 110-189 (190)
142 COG2262 HflX GTPases [General 96.8 0.0062 1.3E-07 67.9 10.0 120 43-171 188-320 (411)
143 cd04151 Arl1 Arl1 subfamily. 96.8 0.003 6.5E-08 61.1 6.9 24 49-72 1-24 (158)
144 cd01888 eIF2_gamma eIF2-gamma 96.8 0.0059 1.3E-07 62.4 9.3 22 49-70 2-23 (203)
145 PRK04004 translation initiatio 96.8 0.0032 7E-08 74.6 8.4 116 44-168 3-136 (586)
146 cd04176 Rap2 Rap2 subgroup. T 96.8 0.003 6.4E-08 61.2 6.8 27 49-75 3-29 (163)
147 cd00157 Rho Rho (Ras homology) 96.8 0.0013 2.9E-08 63.9 4.3 24 49-72 2-25 (171)
148 cd04108 Rab36_Rab34 Rab34/Rab3 96.8 0.0059 1.3E-07 60.4 8.9 25 49-73 2-26 (170)
149 cd04155 Arl3 Arl3 subfamily. 96.8 0.0048 1E-07 60.4 8.2 27 46-72 13-39 (173)
150 cd04137 RheB Rheb (Ras Homolog 96.7 0.0034 7.4E-08 62.0 7.0 24 49-72 3-26 (180)
151 PLN03118 Rab family protein; P 96.7 0.0056 1.2E-07 62.7 8.3 25 48-72 15-39 (211)
152 cd04178 Nucleostemin_like Nucl 96.7 0.0019 4E-08 64.8 4.4 39 47-85 117-156 (172)
153 PLN03110 Rab GTPase; Provision 96.6 0.0071 1.5E-07 62.4 8.7 27 47-73 12-38 (216)
154 cd04140 ARHI_like ARHI subfami 96.6 0.0046 1E-07 60.3 7.0 24 49-72 3-26 (165)
155 cd04109 Rab28 Rab28 subfamily. 96.6 0.009 2E-07 61.4 9.0 24 49-72 2-25 (215)
156 cd04177 RSR1 RSR1 subgroup. R 96.5 0.0063 1.4E-07 59.5 7.1 27 49-75 3-29 (168)
157 cd01882 BMS1 Bms1. Bms1 is an 96.5 0.0062 1.3E-07 63.5 7.4 109 45-171 36-149 (225)
158 cd01886 EF-G Elongation factor 96.5 0.0062 1.4E-07 65.4 7.4 111 50-169 2-130 (270)
159 cd01857 HSR1_MMR1 HSR1/MMR1. 96.5 0.0034 7.4E-08 60.3 4.7 53 49-107 85-138 (141)
160 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.5 0.0071 1.5E-07 59.9 7.1 24 49-72 4-27 (172)
161 PLN03127 Elongation factor Tu; 96.4 0.0059 1.3E-07 70.2 7.3 111 46-169 60-191 (447)
162 cd04148 RGK RGK subfamily. Th 96.4 0.0079 1.7E-07 62.4 7.6 24 49-72 2-25 (221)
163 cd00877 Ran Ran (Ras-related n 96.4 0.0038 8.2E-08 61.4 4.9 24 49-72 2-25 (166)
164 cd04161 Arl2l1_Arl13_like Arl2 96.4 0.034 7.3E-07 54.7 11.6 22 49-70 1-22 (167)
165 TIGR00437 feoB ferrous iron tr 96.4 0.0063 1.4E-07 72.3 7.5 108 54-169 1-113 (591)
166 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.4 0.013 2.7E-07 58.0 8.6 27 47-73 15-41 (174)
167 cd01870 RhoA_like RhoA-like su 96.4 0.025 5.5E-07 55.3 10.5 25 48-72 2-26 (175)
168 cd04120 Rab12 Rab12 subfamily. 96.4 0.015 3.3E-07 59.6 9.1 25 49-73 2-26 (202)
169 cd04144 Ras2 Ras2 subfamily. 96.3 0.0086 1.9E-07 60.2 6.7 24 49-72 1-24 (190)
170 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 96.2 0.014 3E-07 60.9 7.9 24 49-72 3-26 (222)
171 cd04117 Rab15 Rab15 subfamily. 96.2 0.014 3.1E-07 56.8 7.6 27 49-75 2-28 (161)
172 PRK00007 elongation factor G; 96.2 0.0099 2.1E-07 72.0 7.6 113 46-171 9-143 (693)
173 PLN03108 Rab family protein; P 96.2 0.022 4.8E-07 58.4 9.1 30 47-76 6-35 (210)
174 cd04149 Arf6 Arf6 subfamily. 96.2 0.016 3.6E-07 57.1 7.8 27 47-73 9-35 (168)
175 COG4917 EutP Ethanolamine util 96.2 0.0053 1.2E-07 58.0 3.9 31 48-78 2-32 (148)
176 KOG1423 Ras-like GTPase ERA [C 96.1 0.015 3.3E-07 62.6 7.7 118 49-173 74-203 (379)
177 COG1100 GTPase SAR1 and relate 96.1 0.018 3.8E-07 58.8 8.1 115 48-174 6-130 (219)
178 smart00174 RHO Rho (Ras homolo 96.1 0.0084 1.8E-07 58.7 5.4 23 50-72 1-23 (174)
179 cd04132 Rho4_like Rho4-like su 96.1 0.02 4.4E-07 56.9 8.1 24 49-72 2-25 (187)
180 TIGR03596 GTPase_YlqF ribosome 96.1 0.0084 1.8E-07 64.5 5.7 83 23-111 89-177 (276)
181 cd04167 Snu114p Snu114p subfam 96.1 0.019 4.1E-07 59.0 8.1 24 49-72 2-25 (213)
182 PTZ00369 Ras-like protein; Pro 96.1 0.018 3.8E-07 57.9 7.6 26 48-73 6-31 (189)
183 cd04135 Tc10 TC10 subfamily. 96.0 0.017 3.7E-07 56.5 7.1 25 49-73 2-26 (174)
184 PRK10512 selenocysteinyl-tRNA- 96.0 0.014 3.1E-07 69.6 7.7 107 50-170 3-119 (614)
185 cd04143 Rhes_like Rhes_like su 95.9 0.024 5.3E-07 60.0 8.3 24 49-72 2-25 (247)
186 cd01851 GBP Guanylate-binding 95.9 0.0059 1.3E-07 63.7 3.6 37 46-83 6-46 (224)
187 TIGR02034 CysN sulfate adenyly 95.9 0.023 4.9E-07 64.6 8.6 22 49-70 2-23 (406)
188 PRK05506 bifunctional sulfate 95.9 0.024 5.3E-07 68.0 9.1 25 47-71 24-48 (632)
189 PF08477 Miro: Miro-like prote 95.9 0.0056 1.2E-07 56.2 2.8 24 49-72 1-24 (119)
190 PRK09563 rbgA GTPase YlqF; Rev 95.9 0.0088 1.9E-07 64.7 4.6 59 47-111 121-180 (287)
191 PTZ00258 GTP-binding protein; 95.8 0.01 2.2E-07 66.9 5.0 43 46-89 20-63 (390)
192 cd04102 RabL3 RabL3 (Rab-like3 95.8 0.082 1.8E-06 54.3 11.0 27 49-75 2-28 (202)
193 PRK12735 elongation factor Tu; 95.7 0.017 3.6E-07 65.4 6.4 108 49-169 14-142 (396)
194 PLN03126 Elongation factor Tu; 95.7 0.026 5.6E-07 65.5 8.0 38 132-170 174-212 (478)
195 PRK12317 elongation factor 1-a 95.7 0.02 4.3E-07 65.4 7.0 23 48-70 7-29 (425)
196 smart00177 ARF ARF-like small 95.6 0.035 7.6E-07 55.1 7.4 26 47-72 13-38 (175)
197 PRK12736 elongation factor Tu; 95.6 0.024 5.2E-07 64.1 7.0 108 49-169 14-142 (394)
198 TIGR00484 EF-G translation elo 95.5 0.029 6.3E-07 68.0 7.9 119 46-171 9-143 (689)
199 PRK05124 cysN sulfate adenylyl 95.5 0.04 8.7E-07 63.9 8.6 27 44-70 24-50 (474)
200 PRK00049 elongation factor Tu; 95.5 0.022 4.7E-07 64.6 6.2 108 49-169 14-142 (396)
201 cd01885 EF2 EF2 (for archaea a 95.4 0.05 1.1E-06 56.8 8.2 36 132-168 103-138 (222)
202 PRK12739 elongation factor G; 95.4 0.044 9.6E-07 66.5 8.9 116 46-170 7-140 (691)
203 cd01883 EF1_alpha Eukaryotic e 95.4 0.035 7.6E-07 57.5 6.9 19 50-68 2-20 (219)
204 PLN00223 ADP-ribosylation fact 95.4 0.089 1.9E-06 52.7 9.5 25 48-72 18-42 (181)
205 cd04128 Spg1 Spg1p. Spg1p (se 95.4 0.059 1.3E-06 54.1 8.2 25 49-73 2-26 (182)
206 PLN03071 GTP-binding nuclear p 95.3 0.054 1.2E-06 56.1 8.0 27 46-72 12-38 (219)
207 COG1161 Predicted GTPases [Gen 95.3 0.04 8.7E-07 60.7 7.3 60 49-113 134-193 (322)
208 TIGR00485 EF-Tu translation el 95.3 0.026 5.7E-07 63.8 6.0 110 48-170 13-143 (394)
209 cd04105 SR_beta Signal recogni 95.2 0.064 1.4E-06 54.9 8.2 25 48-72 1-25 (203)
210 PRK09602 translation-associate 95.1 0.02 4.4E-07 64.8 4.4 39 48-86 2-40 (396)
211 cd01900 YchF YchF subfamily. 95.0 0.018 3.8E-07 62.1 3.3 36 50-86 1-37 (274)
212 TIGR00157 ribosome small subun 95.0 0.022 4.8E-07 60.3 4.0 58 48-112 121-186 (245)
213 KOG2203 GTP-binding protein [G 95.0 0.028 6E-07 64.4 4.9 41 32-72 21-62 (772)
214 cd01856 YlqF YlqF. Proteins o 95.0 0.022 4.8E-07 56.5 3.8 43 47-89 115-158 (171)
215 cd04130 Wrch_1 Wrch-1 subfamil 95.0 0.083 1.8E-06 51.9 7.8 25 49-73 2-26 (173)
216 cd01896 DRG The developmentall 95.0 0.027 5.9E-07 59.1 4.5 36 49-85 2-38 (233)
217 PRK12289 GTPase RsgA; Reviewed 94.9 0.025 5.3E-07 63.1 4.4 55 49-109 174-236 (352)
218 TIGR03680 eif2g_arch translati 94.9 0.07 1.5E-06 60.6 8.0 22 49-70 6-27 (406)
219 TIGR01394 TypA_BipA GTP-bindin 94.9 0.046 1E-06 65.1 6.7 108 49-170 3-131 (594)
220 PRK10218 GTP-binding protein; 94.8 0.065 1.4E-06 63.9 7.8 113 46-170 4-135 (607)
221 KOG0448 Mitofusin 1 GTPase, in 94.8 0.062 1.3E-06 63.3 7.2 41 48-88 110-150 (749)
222 TIGR00490 aEF-2 translation el 94.8 0.11 2.4E-06 63.4 9.6 24 46-69 18-41 (720)
223 PRK00741 prfC peptide chain re 94.7 0.093 2E-06 61.7 8.7 116 46-171 9-147 (526)
224 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 94.7 0.13 2.8E-06 54.1 8.9 27 46-72 12-38 (232)
225 PRK12288 GTPase RsgA; Reviewed 94.7 0.023 5.1E-07 63.2 3.5 28 49-76 207-234 (347)
226 cd01899 Ygr210 Ygr210 subfamil 94.7 0.026 5.6E-07 62.1 3.7 36 50-86 1-37 (318)
227 TIGR01425 SRP54_euk signal rec 94.7 0.15 3.2E-06 58.3 9.7 56 132-192 219-274 (429)
228 KOG1424 Predicted GTP-binding 94.6 0.024 5.1E-07 64.8 3.2 63 47-114 314-376 (562)
229 TIGR03597 GTPase_YqeH ribosome 94.6 0.029 6.2E-07 62.8 3.8 56 48-109 155-216 (360)
230 PF03193 DUF258: Protein of un 94.5 0.034 7.3E-07 55.3 3.6 28 48-75 36-63 (161)
231 PRK09601 GTP-binding protein Y 94.4 0.042 9.1E-07 61.4 4.4 38 48-86 3-41 (364)
232 PRK04000 translation initiatio 94.4 0.12 2.5E-06 59.0 8.1 22 49-70 11-32 (411)
233 PRK00098 GTPase RsgA; Reviewed 94.3 0.081 1.8E-06 57.6 6.5 24 49-72 166-189 (298)
234 TIGR01393 lepA GTP-binding pro 94.1 0.13 2.8E-06 61.3 8.0 23 48-70 4-26 (595)
235 COG1136 SalX ABC-type antimicr 94.1 0.039 8.5E-07 57.7 3.2 29 49-79 33-61 (226)
236 PLN00116 translation elongatio 94.1 0.12 2.5E-06 64.3 7.8 36 132-168 128-163 (843)
237 PF00735 Septin: Septin; Inte 94.0 0.1 2.2E-06 56.4 6.3 121 49-171 6-158 (281)
238 PRK13351 elongation factor G; 93.9 0.13 2.7E-06 62.5 7.5 115 46-170 7-140 (687)
239 PRK13796 GTPase YqeH; Provisio 93.7 0.047 1E-06 61.2 3.2 53 49-107 162-220 (365)
240 COG1163 DRG Predicted GTPase [ 93.6 0.073 1.6E-06 58.0 4.2 24 48-71 64-87 (365)
241 PTZ00416 elongation factor 2; 93.6 0.24 5.2E-06 61.4 9.3 114 46-168 18-157 (836)
242 PRK14721 flhF flagellar biosyn 93.4 0.41 8.8E-06 54.7 10.1 65 132-201 306-370 (420)
243 cd01854 YjeQ_engC YjeQ/EngC. 93.4 0.078 1.7E-06 57.5 4.2 27 48-74 162-188 (287)
244 TIGR00503 prfC peptide chain r 93.4 0.14 3E-06 60.3 6.5 23 46-68 10-32 (527)
245 KOG0410 Predicted GTP binding 93.2 0.13 2.8E-06 56.0 5.3 41 44-84 175-215 (410)
246 KOG0446 Vacuolar sorting prote 93.2 1.1 2.3E-05 54.1 13.6 225 45-276 184-455 (657)
247 PRK07560 elongation factor EF- 93.1 0.21 4.5E-06 61.2 7.7 114 46-168 19-152 (731)
248 cd00071 GMPK Guanosine monopho 93.0 0.091 2E-06 50.5 3.5 34 50-85 2-39 (137)
249 cd04158 ARD1 ARD1 subfamily. 92.8 0.083 1.8E-06 51.9 3.1 24 49-72 1-24 (169)
250 cd04134 Rho3 Rho3 subfamily. 92.8 0.089 1.9E-06 52.8 3.4 24 49-72 2-25 (189)
251 PF00071 Ras: Ras family; Int 92.8 0.076 1.6E-06 51.1 2.7 24 49-72 1-24 (162)
252 COG0370 FeoB Fe2+ transport sy 92.7 0.24 5.2E-06 58.8 7.0 115 48-170 4-123 (653)
253 PF13555 AAA_29: P-loop contai 92.6 0.12 2.5E-06 43.3 3.1 21 49-69 25-45 (62)
254 TIGR03263 guanyl_kin guanylate 92.6 0.11 2.5E-06 51.5 3.7 35 49-85 3-40 (180)
255 cd01859 MJ1464 MJ1464. This f 92.5 0.31 6.8E-06 47.2 6.6 49 23-76 82-130 (156)
256 cd04103 Centaurin_gamma Centau 92.5 0.11 2.3E-06 50.9 3.4 26 49-74 2-27 (158)
257 PF05879 RHD3: Root hair defec 92.4 0.073 1.6E-06 65.0 2.4 24 53-77 1-24 (742)
258 PF00005 ABC_tran: ABC transpo 92.4 0.1 2.2E-06 49.2 2.9 23 49-71 13-35 (137)
259 TIGR00483 EF-1_alpha translati 92.2 0.33 7.2E-06 55.5 7.4 22 48-69 8-29 (426)
260 PF03205 MobB: Molybdopterin g 92.2 0.11 2.3E-06 50.4 2.9 23 48-70 1-23 (140)
261 COG4107 PhnK ABC-type phosphon 92.2 0.11 2.5E-06 52.0 3.0 31 49-81 34-64 (258)
262 cd01874 Cdc42 Cdc42 subfamily. 92.1 0.13 2.8E-06 51.1 3.4 24 49-72 3-26 (175)
263 cd04150 Arf1_5_like Arf1-Arf5- 92.0 0.13 2.9E-06 50.0 3.4 24 49-72 2-25 (159)
264 COG1101 PhnK ABC-type uncharac 92.0 0.12 2.6E-06 53.5 3.1 26 45-70 27-55 (263)
265 COG3840 ThiQ ABC-type thiamine 92.0 0.12 2.7E-06 52.2 3.1 28 49-77 27-54 (231)
266 PRK05433 GTP-binding protein L 92.0 0.41 8.8E-06 57.3 8.0 23 47-69 7-29 (600)
267 TIGR01166 cbiO cobalt transpor 92.0 0.12 2.7E-06 51.9 3.1 28 49-78 20-47 (190)
268 cd03225 ABC_cobalt_CbiO_domain 92.0 0.13 2.7E-06 52.6 3.3 28 49-78 29-56 (211)
269 cd04131 Rnd Rnd subfamily. Th 91.9 0.13 2.9E-06 51.4 3.3 24 49-72 3-26 (178)
270 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.8 0.13 2.7E-06 52.9 3.1 28 49-78 32-59 (218)
271 COG5192 BMS1 GTP-binding prote 91.8 0.24 5.2E-06 57.1 5.4 114 43-172 64-180 (1077)
272 cd03261 ABC_Org_Solvent_Resist 91.8 0.13 2.7E-06 53.6 3.1 28 49-78 28-55 (235)
273 PTZ00327 eukaryotic translatio 91.7 0.6 1.3E-05 54.1 8.7 23 49-71 36-58 (460)
274 cd04121 Rab40 Rab40 subfamily. 91.7 0.15 3.2E-06 51.7 3.4 26 47-72 6-31 (189)
275 PTZ00141 elongation factor 1- 91.7 0.44 9.4E-06 55.0 7.6 21 49-69 9-29 (446)
276 PRK11889 flhF flagellar biosyn 91.7 0.32 7E-06 55.0 6.2 65 132-201 357-421 (436)
277 cd03224 ABC_TM1139_LivF_branch 91.7 0.14 3E-06 52.7 3.2 28 49-78 28-55 (222)
278 cd03263 ABC_subfamily_A The AB 91.7 0.14 3E-06 52.7 3.2 28 49-78 30-57 (220)
279 PRK00300 gmk guanylate kinase; 91.7 0.15 3.2E-06 51.8 3.4 37 49-85 7-44 (205)
280 cd03264 ABC_drug_resistance_li 91.6 0.14 3E-06 52.4 3.2 28 49-78 27-54 (211)
281 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.6 0.14 3.1E-06 49.5 3.0 28 50-79 29-56 (144)
282 cd03218 ABC_YhbG The ABC trans 91.6 0.14 3.1E-06 53.0 3.2 28 49-78 28-55 (232)
283 COG2229 Predicted GTPase [Gene 91.6 0.97 2.1E-05 45.7 8.8 124 45-179 8-147 (187)
284 smart00176 RAN Ran (Ras-relate 91.6 0.46 1E-05 48.7 6.9 20 53-72 1-20 (200)
285 cd01130 VirB11-like_ATPase Typ 91.6 0.14 2.9E-06 51.7 2.9 30 49-80 27-56 (186)
286 cd03266 ABC_NatA_sodium_export 91.5 0.15 3.2E-06 52.4 3.2 28 49-78 33-60 (218)
287 KOG1707 Predicted Ras related/ 91.5 0.13 2.8E-06 59.8 2.9 27 48-74 10-36 (625)
288 cd00267 ABC_ATPase ABC (ATP-bi 91.4 0.16 3.4E-06 49.5 3.1 32 48-81 26-57 (157)
289 cd03269 ABC_putative_ATPase Th 91.4 0.15 3.3E-06 52.1 3.1 32 45-78 23-55 (210)
290 TIGR02673 FtsE cell division A 91.3 0.16 3.5E-06 52.0 3.2 23 49-71 30-52 (214)
291 PF13521 AAA_28: AAA domain; P 91.3 0.13 2.8E-06 50.4 2.4 22 49-70 1-22 (163)
292 cd03215 ABC_Carb_Monos_II This 91.3 0.16 3.6E-06 50.8 3.2 29 49-79 28-56 (182)
293 PRK14723 flhF flagellar biosyn 91.3 0.46 1E-05 57.9 7.5 66 132-201 300-367 (767)
294 PTZ00133 ADP-ribosylation fact 91.3 0.17 3.6E-06 50.7 3.3 26 48-73 18-43 (182)
295 cd03226 ABC_cobalt_CbiO_domain 91.3 0.16 3.4E-06 51.8 3.1 28 49-78 28-55 (205)
296 PRK11629 lolD lipoprotein tran 91.3 0.15 3.3E-06 53.1 3.0 28 49-78 37-64 (233)
297 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 91.2 0.18 4E-06 50.7 3.5 25 49-73 7-31 (182)
298 PRK13541 cytochrome c biogenes 91.2 0.17 3.6E-06 51.3 3.1 28 49-78 28-55 (195)
299 TIGR00960 3a0501s02 Type II (G 91.2 0.16 3.5E-06 52.1 3.1 23 49-71 31-53 (216)
300 COG0410 LivF ABC-type branched 91.2 0.17 3.7E-06 52.9 3.1 23 49-71 31-53 (237)
301 cd03293 ABC_NrtD_SsuB_transpor 91.1 0.16 3.5E-06 52.3 3.1 28 49-78 32-59 (220)
302 TIGR02315 ABC_phnC phosphonate 91.1 0.16 3.5E-06 53.0 3.1 28 49-78 30-57 (243)
303 cd04126 Rab20 Rab20 subfamily. 91.1 0.18 3.9E-06 52.5 3.4 24 49-72 2-25 (220)
304 cd03259 ABC_Carb_Solutes_like 91.1 0.17 3.6E-06 51.9 3.1 28 49-78 28-55 (213)
305 cd03265 ABC_DrrA DrrA is the A 91.0 0.17 3.7E-06 52.2 3.1 28 49-78 28-55 (220)
306 PRK06731 flhF flagellar biosyn 91.0 0.56 1.2E-05 50.5 7.1 64 132-200 191-254 (270)
307 cd03256 ABC_PhnC_transporter A 91.0 0.18 3.8E-06 52.6 3.2 28 49-78 29-56 (241)
308 cd03222 ABC_RNaseL_inhibitor T 91.0 0.17 3.8E-06 50.9 3.0 29 49-79 27-55 (177)
309 cd01871 Rac1_like Rac1-like su 90.9 0.2 4.4E-06 49.7 3.4 24 49-72 3-26 (174)
310 cd03278 ABC_SMC_barmotin Barmo 90.9 0.12 2.6E-06 52.8 1.9 23 48-70 23-45 (197)
311 cd04129 Rho2 Rho2 subfamily. 90.9 0.24 5.1E-06 49.6 3.9 24 49-72 3-26 (187)
312 PRK15112 antimicrobial peptide 90.9 0.18 3.9E-06 53.8 3.2 29 49-79 41-69 (267)
313 cd03292 ABC_FtsE_transporter F 90.9 0.17 3.8E-06 51.7 3.0 28 49-78 29-56 (214)
314 cd03369 ABCC_NFT1 Domain 2 of 90.9 0.18 4E-06 51.4 3.1 30 49-80 36-65 (207)
315 cd03230 ABC_DR_subfamily_A Thi 90.9 0.19 4.1E-06 49.9 3.2 28 49-78 28-55 (173)
316 PRK13540 cytochrome c biogenes 90.9 0.19 4E-06 51.1 3.2 28 49-78 29-56 (200)
317 PRK15177 Vi polysaccharide exp 90.8 0.2 4.4E-06 51.6 3.4 31 49-81 15-45 (213)
318 cd03262 ABC_HisP_GlnQ_permease 90.8 0.19 4.2E-06 51.3 3.3 28 49-78 28-55 (213)
319 cd03254 ABCC_Glucan_exporter_l 90.8 0.19 4.1E-06 52.0 3.2 29 49-79 31-59 (229)
320 cd03258 ABC_MetN_methionine_tr 90.8 0.2 4.2E-06 52.1 3.3 28 49-78 33-60 (233)
321 cd03229 ABC_Class3 This class 90.7 0.2 4.2E-06 50.1 3.1 29 49-79 28-56 (178)
322 cd03216 ABC_Carb_Monos_I This 90.7 0.2 4.4E-06 49.4 3.1 28 49-78 28-55 (163)
323 PRK06995 flhF flagellar biosyn 90.7 0.76 1.7E-05 53.4 8.2 65 132-201 371-435 (484)
324 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.7 0.19 4.1E-06 52.4 3.1 29 49-79 31-59 (238)
325 PRK10895 lipopolysaccharide AB 90.7 0.2 4.3E-06 52.4 3.2 28 49-78 31-58 (241)
326 cd03219 ABC_Mj1267_LivG_branch 90.7 0.19 4.2E-06 52.2 3.1 28 49-78 28-55 (236)
327 cd03231 ABC_CcmA_heme_exporter 90.6 0.21 4.5E-06 50.9 3.2 28 49-78 28-55 (201)
328 TIGR03608 L_ocin_972_ABC putat 90.5 0.2 4.4E-06 50.8 3.1 23 49-71 26-48 (206)
329 PRK11124 artP arginine transpo 90.5 0.2 4.3E-06 52.4 3.1 28 49-78 30-57 (242)
330 cd03246 ABCC_Protease_Secretio 90.5 0.21 4.5E-06 49.6 3.1 29 49-79 30-58 (173)
331 cd03257 ABC_NikE_OppD_transpor 90.5 0.21 4.6E-06 51.4 3.2 28 49-78 33-60 (228)
332 cd03298 ABC_ThiQ_thiamine_tran 90.5 0.21 4.7E-06 51.0 3.2 28 49-78 26-53 (211)
333 PRK13651 cobalt transporter AT 90.5 0.2 4.4E-06 54.7 3.2 29 49-79 35-63 (305)
334 cd03245 ABCC_bacteriocin_expor 90.4 0.22 4.7E-06 51.2 3.3 29 49-79 32-60 (220)
335 COG0536 Obg Predicted GTPase [ 90.4 1.4 3E-05 48.7 9.4 34 50-85 162-197 (369)
336 cd03236 ABC_RNaseL_inhibitor_d 90.4 0.22 4.7E-06 53.1 3.3 31 49-81 28-58 (255)
337 PRK14250 phosphate ABC transpo 90.4 0.22 4.7E-06 52.3 3.2 28 49-78 31-58 (241)
338 cd03268 ABC_BcrA_bacitracin_re 90.4 0.21 4.6E-06 50.9 3.1 28 49-78 28-55 (208)
339 cd03235 ABC_Metallic_Cations A 90.4 0.22 4.7E-06 51.0 3.2 23 49-71 27-49 (213)
340 cd03253 ABCC_ATM1_transporter 90.4 0.21 4.7E-06 51.9 3.1 28 49-78 29-56 (236)
341 TIGR02211 LolD_lipo_ex lipopro 90.4 0.22 4.8E-06 51.2 3.2 28 49-78 33-60 (221)
342 PRK13641 cbiO cobalt transport 90.3 0.21 4.5E-06 54.0 3.2 29 49-79 35-63 (287)
343 TIGR03864 PQQ_ABC_ATP ABC tran 90.3 0.21 4.5E-06 52.1 3.0 28 49-78 29-56 (236)
344 cd03260 ABC_PstB_phosphate_tra 90.3 0.19 4.1E-06 52.0 2.7 23 49-71 28-50 (227)
345 cd03217 ABC_FeS_Assembly ABC-t 90.3 0.23 5.1E-06 50.5 3.3 30 49-78 28-57 (200)
346 TIGR01978 sufC FeS assembly AT 90.3 0.24 5.1E-06 51.7 3.4 23 49-71 28-50 (243)
347 cd03301 ABC_MalK_N The N-termi 90.3 0.22 4.8E-06 50.9 3.1 28 49-78 28-55 (213)
348 cd03228 ABCC_MRP_Like The MRP 90.3 0.24 5.1E-06 49.1 3.2 29 49-79 30-58 (171)
349 cd03300 ABC_PotA_N PotA is an 90.2 0.22 4.7E-06 51.9 3.0 29 49-79 28-56 (232)
350 TIGR02324 CP_lyasePhnL phospho 90.2 0.24 5.1E-06 51.2 3.3 28 49-78 36-63 (224)
351 cd03223 ABCD_peroxisomal_ALDP 90.2 0.25 5.4E-06 48.9 3.3 29 49-79 29-57 (166)
352 TIGR02323 CP_lyasePhnK phospho 90.2 0.23 5E-06 52.3 3.2 28 49-78 31-58 (253)
353 TIGR03410 urea_trans_UrtE urea 90.1 0.24 5.2E-06 51.4 3.2 28 49-78 28-55 (230)
354 PRK13543 cytochrome c biogenes 90.1 0.23 5E-06 51.1 3.1 29 49-79 39-67 (214)
355 PRK11248 tauB taurine transpor 90.1 0.24 5.2E-06 52.6 3.2 28 49-78 29-56 (255)
356 PRK13635 cbiO cobalt transport 90.1 0.23 5E-06 53.5 3.2 28 49-78 35-62 (279)
357 PRK10584 putative ABC transpor 90.0 0.24 5.1E-06 51.3 3.1 28 49-78 38-65 (228)
358 TIGR00968 3a0106s01 sulfate AB 90.0 0.24 5.1E-06 51.9 3.1 29 49-79 28-56 (237)
359 CHL00131 ycf16 sulfate ABC tra 89.9 0.26 5.6E-06 51.8 3.3 30 49-78 35-64 (252)
360 PRK13539 cytochrome c biogenes 89.9 0.26 5.6E-06 50.4 3.2 28 49-78 30-57 (207)
361 cd03233 ABC_PDR_domain1 The pl 89.9 0.23 4.9E-06 50.7 2.8 23 49-71 35-57 (202)
362 TIGR01184 ntrCD nitrate transp 89.9 0.26 5.6E-06 51.3 3.3 28 49-78 13-40 (230)
363 PRK13632 cbiO cobalt transport 89.9 0.24 5.2E-06 52.9 3.1 28 49-78 37-64 (271)
364 cd03250 ABCC_MRP_domain1 Domai 89.8 0.26 5.7E-06 50.1 3.2 28 49-78 33-60 (204)
365 cd03295 ABC_OpuCA_Osmoprotecti 89.8 0.26 5.6E-06 51.6 3.3 28 49-78 29-56 (242)
366 cd03214 ABC_Iron-Siderophores_ 89.8 0.27 5.9E-06 49.1 3.2 29 49-79 27-55 (180)
367 PRK13645 cbiO cobalt transport 89.8 0.25 5.5E-06 53.3 3.2 29 49-79 39-67 (289)
368 cd01875 RhoG RhoG subfamily. 89.8 0.28 6.1E-06 49.4 3.4 25 48-72 4-28 (191)
369 PRK13643 cbiO cobalt transport 89.8 0.25 5.3E-06 53.5 3.1 28 49-78 34-61 (288)
370 cd03232 ABC_PDR_domain2 The pl 89.7 0.28 6E-06 49.7 3.3 31 49-79 35-65 (192)
371 TIGR03740 galliderm_ABC gallid 89.7 0.25 5.5E-06 51.0 3.1 28 49-78 28-55 (223)
372 PRK13538 cytochrome c biogenes 89.7 0.27 5.9E-06 50.1 3.2 28 49-78 29-56 (204)
373 cd03251 ABCC_MsbA MsbA is an e 89.7 0.26 5.6E-06 51.2 3.1 28 49-78 30-57 (234)
374 COG1116 TauB ABC-type nitrate/ 89.7 0.28 6E-06 51.9 3.3 27 49-76 31-57 (248)
375 PRK10908 cell division protein 89.7 0.25 5.5E-06 50.9 3.0 28 49-78 30-57 (222)
376 cd03252 ABCC_Hemolysin The ABC 89.7 0.26 5.7E-06 51.3 3.2 28 49-78 30-57 (237)
377 cd03297 ABC_ModC_molybdenum_tr 89.7 0.28 6E-06 50.4 3.3 29 48-78 24-52 (214)
378 PRK10253 iron-enterobactin tra 89.7 0.26 5.5E-06 52.5 3.1 28 49-78 35-62 (265)
379 TIGR01277 thiQ thiamine ABC tr 89.7 0.27 5.8E-06 50.4 3.2 28 49-78 26-53 (213)
380 PRK10247 putative ABC transpor 89.6 0.28 6E-06 50.9 3.2 28 49-78 35-62 (225)
381 cd03247 ABCC_cytochrome_bd The 89.5 0.29 6.3E-06 48.8 3.2 28 49-78 30-57 (178)
382 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 89.5 0.26 5.6E-06 51.2 3.0 28 49-78 50-77 (224)
383 cd03294 ABC_Pro_Gly_Bertaine T 89.5 0.27 5.8E-06 52.6 3.1 28 49-78 52-79 (269)
384 PRK13652 cbiO cobalt transport 89.5 0.26 5.7E-06 52.9 3.1 29 49-79 32-60 (277)
385 PRK13638 cbiO cobalt transport 89.5 0.27 5.8E-06 52.5 3.1 28 49-78 29-56 (271)
386 cd03291 ABCC_CFTR1 The CFTR su 89.4 0.28 6.1E-06 53.1 3.2 30 49-80 65-94 (282)
387 PRK11247 ssuB aliphatic sulfon 89.4 0.27 5.8E-06 52.4 3.1 29 49-79 40-68 (257)
388 cd03296 ABC_CysA_sulfate_impor 89.4 0.28 6E-06 51.3 3.1 28 49-78 30-57 (239)
389 COG3910 Predicted ATPase [Gene 89.4 0.37 8E-06 49.1 3.7 46 26-78 23-69 (233)
390 PRK13633 cobalt transporter AT 89.4 0.28 6.1E-06 52.7 3.2 29 49-79 38-66 (280)
391 TIGR01189 ccmA heme ABC export 89.3 0.33 7.2E-06 49.2 3.5 23 49-71 28-50 (198)
392 PRK13639 cbiO cobalt transport 89.3 0.28 6.1E-06 52.6 3.1 29 49-79 30-58 (275)
393 PRK13648 cbiO cobalt transport 89.3 0.28 6E-06 52.4 3.1 28 49-78 37-64 (269)
394 KOG0094 GTPase Rab6/YPT6/Ryh1, 89.3 0.28 6E-06 50.0 2.7 25 44-68 19-43 (221)
395 COG1120 FepC ABC-type cobalami 89.2 0.31 6.7E-06 52.0 3.3 32 45-78 23-57 (258)
396 PRK10416 signal recognition pa 89.2 1.2 2.7E-05 49.0 8.1 56 132-192 239-294 (318)
397 TIGR03771 anch_rpt_ABC anchore 89.2 0.3 6.6E-06 50.6 3.2 23 49-71 8-30 (223)
398 TIGR03411 urea_trans_UrtD urea 89.2 0.31 6.7E-06 50.9 3.3 28 49-78 30-57 (242)
399 TIGR02769 nickel_nikE nickel i 89.2 0.3 6.4E-06 52.0 3.2 28 49-78 39-66 (265)
400 cd03244 ABCC_MRP_domain2 Domai 89.2 0.31 6.7E-06 50.1 3.2 28 49-78 32-59 (221)
401 PRK14738 gmk guanylate kinase; 89.1 0.38 8.2E-06 49.5 3.8 22 49-70 15-36 (206)
402 PRK09580 sufC cysteine desulfu 89.1 0.3 6.5E-06 51.2 3.1 30 49-78 29-58 (248)
403 cd03237 ABC_RNaseL_inhibitor_d 89.1 0.33 7.1E-06 51.4 3.4 29 49-79 27-55 (246)
404 PRK10575 iron-hydroxamate tran 89.1 0.3 6.6E-06 52.0 3.2 23 49-71 39-61 (265)
405 PRK14737 gmk guanylate kinase; 89.1 0.41 8.9E-06 48.6 3.9 22 49-70 6-27 (186)
406 PRK11614 livF leucine/isoleuci 89.1 0.31 6.7E-06 50.8 3.2 28 49-78 33-60 (237)
407 PRK10619 histidine/lysine/argi 89.0 0.3 6.5E-06 51.7 3.1 28 49-78 33-60 (257)
408 PRK11264 putative amino-acid A 89.0 0.3 6.6E-06 51.2 3.1 28 49-78 31-58 (250)
409 COG1162 Predicted GTPases [Gen 89.0 0.24 5.2E-06 53.9 2.3 22 49-70 166-187 (301)
410 TIGR03873 F420-0_ABC_ATP propo 89.0 0.32 6.9E-06 51.4 3.2 28 49-78 29-56 (256)
411 PRK11300 livG leucine/isoleuci 89.0 0.31 6.8E-06 51.3 3.1 28 49-78 33-60 (255)
412 cd03248 ABCC_TAP TAP, the Tran 88.9 0.31 6.8E-06 50.3 3.1 28 49-78 42-69 (226)
413 PRK11701 phnK phosphonate C-P 88.9 0.33 7.1E-06 51.4 3.2 28 49-78 34-61 (258)
414 PRK13546 teichoic acids export 88.9 0.31 6.7E-06 52.1 3.1 29 49-79 52-80 (264)
415 TIGR03348 VI_IcmF type VI secr 88.9 1.4 3E-05 56.9 9.3 32 44-77 108-139 (1169)
416 PRK13647 cbiO cobalt transport 88.8 0.31 6.8E-06 52.3 3.1 28 49-78 33-60 (274)
417 cd03273 ABC_SMC2_euk Eukaryoti 88.8 0.33 7.1E-06 51.3 3.2 27 44-70 22-48 (251)
418 PRK13851 type IV secretion sys 88.8 0.31 6.7E-06 54.3 3.1 31 49-81 164-194 (344)
419 TIGR02982 heterocyst_DevA ABC 88.7 0.33 7.1E-06 50.1 3.0 28 49-78 33-60 (220)
420 PRK13636 cbiO cobalt transport 88.7 0.33 7E-06 52.4 3.1 29 49-79 34-62 (283)
421 TIGR03005 ectoine_ehuA ectoine 88.7 0.33 7.2E-06 51.1 3.1 28 49-78 28-55 (252)
422 PRK13631 cbiO cobalt transport 88.6 0.34 7.4E-06 53.3 3.3 29 49-79 54-82 (320)
423 cd03290 ABCC_SUR1_N The SUR do 88.6 0.4 8.6E-06 49.3 3.5 23 49-71 29-51 (218)
424 PF05621 TniB: Bacterial TniB 88.6 0.76 1.6E-05 50.1 5.7 59 25-87 42-100 (302)
425 PRK11831 putative ABC transpor 88.5 0.36 7.7E-06 51.6 3.2 23 49-71 35-57 (269)
426 PRK13637 cbiO cobalt transport 88.5 0.34 7.5E-06 52.3 3.1 28 49-78 35-62 (287)
427 PRK09493 glnQ glutamine ABC tr 88.4 0.35 7.6E-06 50.5 3.0 28 49-78 29-56 (240)
428 PRK13649 cbiO cobalt transport 88.4 0.34 7.5E-06 51.9 3.0 23 49-71 35-57 (280)
429 COG3638 ABC-type phosphate/pho 88.4 0.41 8.8E-06 50.3 3.4 28 49-78 32-59 (258)
430 PRK15056 manganese/iron transp 88.4 0.35 7.6E-06 51.7 3.1 23 49-71 35-57 (272)
431 COG0194 Gmk Guanylate kinase [ 88.3 0.34 7.3E-06 49.2 2.6 35 49-83 6-40 (191)
432 COG1126 GlnQ ABC-type polar am 88.1 0.46 1E-05 49.4 3.5 24 49-72 30-53 (240)
433 PRK13548 hmuV hemin importer A 88.1 0.4 8.6E-06 50.9 3.2 23 49-71 30-52 (258)
434 PRK10771 thiQ thiamine transpo 88.1 0.4 8.8E-06 49.8 3.2 28 49-78 27-54 (232)
435 PRK11231 fecE iron-dicitrate t 88.1 0.4 8.6E-06 50.7 3.2 28 49-78 30-57 (255)
436 PRK13547 hmuV hemin importer A 88.0 0.38 8.3E-06 51.7 3.1 23 49-71 29-51 (272)
437 PRK09544 znuC high-affinity zi 88.0 0.38 8.2E-06 51.0 3.0 28 49-78 32-59 (251)
438 TIGR01360 aden_kin_iso1 adenyl 87.9 0.38 8.2E-06 47.8 2.8 23 46-68 2-24 (188)
439 PRK13646 cbiO cobalt transport 87.9 0.4 8.7E-06 51.7 3.2 28 49-78 35-62 (286)
440 COG4559 ABC-type hemin transpo 87.9 0.43 9.3E-06 49.5 3.1 27 49-76 29-55 (259)
441 cd04133 Rop_like Rop subfamily 87.9 0.47 1E-05 47.5 3.4 24 49-72 3-26 (176)
442 PRK13644 cbiO cobalt transport 87.9 0.41 8.9E-06 51.3 3.2 28 49-78 30-57 (274)
443 PF13304 AAA_21: AAA domain; P 87.9 0.16 3.4E-06 51.2 0.0 20 51-70 3-22 (303)
444 PF00025 Arf: ADP-ribosylation 87.8 0.42 9.2E-06 47.6 3.0 26 46-71 13-38 (175)
445 PRK13642 cbiO cobalt transport 87.8 0.42 9E-06 51.3 3.2 28 49-78 35-62 (277)
446 cd03275 ABC_SMC1_euk Eukaryoti 87.8 0.34 7.3E-06 51.2 2.4 24 48-71 23-46 (247)
447 PRK10078 ribose 1,5-bisphospho 87.7 0.41 8.9E-06 48.2 2.9 23 49-71 4-26 (186)
448 TIGR02788 VirB11 P-type DNA tr 87.7 0.4 8.7E-06 52.5 3.0 31 48-80 145-175 (308)
449 TIGR01188 drrA daunorubicin re 87.6 0.41 9E-06 52.1 3.1 28 49-78 21-48 (302)
450 PRK10867 signal recognition pa 87.6 1.7 3.6E-05 50.0 8.0 56 132-192 220-275 (433)
451 cd03213 ABCG_EPDR ABCG transpo 87.6 0.44 9.5E-06 48.3 3.0 22 49-70 37-58 (194)
452 COG0532 InfB Translation initi 87.5 1.6 3.4E-05 50.7 7.7 111 45-169 3-121 (509)
453 cd03288 ABCC_SUR2 The SUR doma 87.5 0.45 9.7E-06 50.4 3.2 28 49-78 49-76 (257)
454 PRK10419 nikE nickel transport 87.4 0.45 9.7E-06 50.8 3.2 28 49-78 40-67 (268)
455 PRK13634 cbiO cobalt transport 87.4 0.44 9.6E-06 51.6 3.1 28 49-78 35-62 (290)
456 PRK14269 phosphate ABC transpo 87.4 0.47 1E-05 49.9 3.2 23 49-71 30-52 (246)
457 PRK13640 cbiO cobalt transport 87.4 0.44 9.5E-06 51.3 3.1 23 49-71 35-57 (282)
458 cd03240 ABC_Rad50 The catalyti 87.4 0.64 1.4E-05 47.7 4.2 32 45-78 20-55 (204)
459 COG1121 ZnuC ABC-type Mn/Zn tr 87.4 0.45 9.9E-06 50.6 3.1 33 49-83 32-64 (254)
460 COG3839 MalK ABC-type sugar tr 87.4 0.46 1E-05 52.7 3.2 24 49-72 31-54 (338)
461 TIGR01288 nodI ATP-binding ABC 87.3 0.44 9.5E-06 51.9 3.1 28 49-78 32-59 (303)
462 PRK12740 elongation factor G; 87.3 1.2 2.6E-05 53.9 7.1 38 132-170 90-127 (668)
463 cd03267 ABC_NatA_like Similar 87.3 0.46 1E-05 49.7 3.1 23 49-71 49-71 (236)
464 PTZ00132 GTP-binding nuclear p 87.3 0.54 1.2E-05 48.1 3.5 26 45-70 7-33 (215)
465 KOG1490 GTP-binding protein CR 87.3 2 4.4E-05 49.5 8.2 45 27-71 146-192 (620)
466 TIGR02770 nickel_nikD nickel i 87.2 0.47 1E-05 49.3 3.1 23 49-71 14-36 (230)
467 TIGR00972 3a0107s01c2 phosphat 87.2 0.45 9.8E-06 50.0 3.0 23 49-71 29-51 (247)
468 COG4988 CydD ABC-type transpor 87.2 0.52 1.1E-05 55.1 3.6 28 49-78 349-376 (559)
469 PRK10851 sulfate/thiosulfate t 87.0 0.48 1E-05 52.9 3.2 28 49-78 30-57 (353)
470 PRK10751 molybdopterin-guanine 87.0 0.44 9.5E-06 48.0 2.6 26 45-70 4-29 (173)
471 PRK14240 phosphate transporter 86.8 0.49 1.1E-05 49.7 3.0 23 49-71 31-53 (250)
472 TIGR02322 phosphon_PhnN phosph 86.8 0.45 9.7E-06 47.2 2.6 22 49-70 3-24 (179)
473 TIGR00064 ftsY signal recognit 86.8 3.3 7.1E-05 44.7 9.3 56 132-192 197-252 (272)
474 PRK03695 vitamin B12-transport 86.8 0.48 1E-05 50.0 2.9 23 49-71 24-46 (248)
475 PRK14722 flhF flagellar biosyn 86.8 0.57 1.2E-05 52.7 3.6 68 132-201 252-325 (374)
476 KOG2484 GTPase [General functi 86.8 0.54 1.2E-05 52.6 3.3 56 49-110 254-310 (435)
477 PRK13650 cbiO cobalt transport 86.7 0.52 1.1E-05 50.7 3.2 28 49-78 35-62 (279)
478 cd03299 ABC_ModC_like Archeal 86.7 0.52 1.1E-05 49.2 3.1 28 49-78 27-54 (235)
479 PRK10938 putative molybdenum t 86.6 0.51 1.1E-05 54.8 3.3 29 49-79 31-59 (490)
480 PF13191 AAA_16: AAA ATPase do 86.5 0.71 1.5E-05 45.4 3.8 40 28-70 8-47 (185)
481 PRK11153 metN DL-methionine tr 86.4 0.51 1.1E-05 52.5 3.0 23 49-71 33-55 (343)
482 PRK14239 phosphate transporter 86.4 0.52 1.1E-05 49.5 3.0 22 49-70 33-54 (252)
483 cd03234 ABCG_White The White s 86.4 0.53 1.1E-05 48.7 3.0 23 49-71 35-57 (226)
484 PRK14262 phosphate ABC transpo 86.4 0.52 1.1E-05 49.5 2.9 23 49-71 31-53 (250)
485 PRK14247 phosphate ABC transpo 86.4 0.52 1.1E-05 49.5 2.9 23 49-71 31-53 (250)
486 PRK14261 phosphate ABC transpo 86.3 0.54 1.2E-05 49.6 3.0 23 49-71 34-56 (253)
487 PRK14241 phosphate transporter 86.3 0.54 1.2E-05 49.8 3.0 23 49-71 32-54 (258)
488 PRK12723 flagellar biosynthesi 86.2 2.2 4.8E-05 48.4 7.9 65 132-201 292-356 (388)
489 PRK11650 ugpC glycerol-3-phosp 86.2 0.53 1.2E-05 52.7 3.0 23 49-71 32-54 (356)
490 PRK11144 modC molybdate transp 86.2 0.54 1.2E-05 52.4 3.1 28 49-78 26-53 (352)
491 PLN00023 GTP-binding protein; 86.1 0.6 1.3E-05 51.6 3.3 31 44-74 18-48 (334)
492 TIGR00235 udk uridine kinase. 86.1 0.48 1E-05 48.5 2.4 22 49-70 8-29 (207)
493 cd03289 ABCC_CFTR2 The CFTR su 86.1 0.54 1.2E-05 50.7 2.9 23 49-71 32-54 (275)
494 PRK10418 nikD nickel transport 86.0 0.61 1.3E-05 49.3 3.2 23 49-71 31-53 (254)
495 KOG0054 Multidrug resistance-a 85.9 0.53 1.2E-05 60.6 3.1 29 49-79 549-577 (1381)
496 PRK14273 phosphate ABC transpo 85.9 0.58 1.2E-05 49.4 3.0 23 49-71 35-57 (254)
497 PRK12727 flagellar biosynthesi 85.9 3.8 8.2E-05 48.3 9.7 65 132-201 464-528 (559)
498 PRK09984 phosphonate/organopho 85.9 0.58 1.3E-05 49.6 3.0 23 49-71 32-54 (262)
499 PRK13900 type IV secretion sys 85.8 0.52 1.1E-05 52.3 2.6 29 49-79 162-190 (332)
500 cd03239 ABC_SMC_head The struc 85.8 0.55 1.2E-05 47.3 2.6 20 49-68 24-43 (178)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=3.6e-103 Score=910.18 Aligned_cols=589 Identities=39% Similarity=0.571 Sum_probs=522.0
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCc-cccc
Q 004228 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTD-EEYG 99 (767)
Q Consensus 21 ~~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~-~~~~ 99 (767)
..+.++|++|++||.|..+|.+..++||+|||||+||+|||||||+|+|++|||||+|+|||||++++|.+.... ++|+
T Consensus 3 ~~~~li~~vn~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~ 82 (657)
T KOG0446|consen 3 LMRLLIPLSNPLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEA 82 (657)
T ss_pred hhhhccccchHHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccch
Confidence 567899999999999999998888999999999999999999999999999999999999999999999998653 6999
Q ss_pred ccc-cCCCCcccChhHHHHHHHHHHhhhhcCCc-----------------------------------------------
Q 004228 100 EFL-HLPGKRFYDFSEIRREIQAQTDKEAGGNK----------------------------------------------- 131 (767)
Q Consensus 100 ~f~-~~pg~~~~d~~~i~~~i~~~t~~~~g~n~----------------------------------------------- 131 (767)
+|. |.++..|+||++++++|+++|++++|.|+
T Consensus 83 ~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi 162 (657)
T KOG0446|consen 83 SFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMI 162 (657)
T ss_pred hccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHH
Confidence 999 99999999999999999999999998776
Q ss_pred -------------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChh
Q 004228 132 -------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQE 198 (767)
Q Consensus 132 -------------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~ 198 (767)
|+|||+|++|++|+++|+++||.|.|||||+||+|+||+||+++++|.|+.++|++||++|+||+|+
T Consensus 163 ~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~vvnR~q~ 242 (657)
T KOG0446|consen 163 EEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVGVVNRSQS 242 (657)
T ss_pred HHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceeeeeccchh
Confidence 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCHHHHHHHHHHhhccCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 004228 199 DIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITES 278 (767)
Q Consensus 199 di~~~~s~~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~Ls~iL~~hI~~~LP~l~~~I~~~L~~~~~eL~~lG~~~~~ 278 (767)
+|..++++.+|+..|..||.+||.|+.+..++|+++|+++|+.+|..||+++||.|+..|+.++.+.++||..||. ...
T Consensus 243 di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~g~-~~~ 321 (657)
T KOG0446|consen 243 IIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNRIGA-VDV 321 (657)
T ss_pred hhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc-cCC
Confidence 9999999999999999999999999999988999999999999999999999999999999999999999999997 333
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhccCCcccCCcccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCCCC
Q 004228 279 KAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSA 358 (767)
Q Consensus 279 ~~~~~~~Ll~~i~~F~~~~~~~i~G~~~~~~~~~l~ggaRi~~if~~~F~~~l~~~~p~~~l~~~dI~~~I~n~~G~~~p 358 (767)
.......++.++..|+..|...+.|+.+...+.+++||+||+|+|++.|...+..++|+..+...+|++++.|++|++++
T Consensus 322 ~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~~G~~~~ 401 (657)
T KOG0446|consen 322 DLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEASGIRPS 401 (657)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhccCCCcc
Confidence 34467889999999999999999999876557899999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhh-ccccchhHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 004228 359 LFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVN-ELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHII 437 (767)
Q Consensus 359 ~fvp~~~fe~Lvr~qI~~l~~Pa~~c~~~V~~el~~i~~~~~~~-~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li 437 (767)
+|+|+.+||.+|++||+.+++||++|++.|+++|.+++++|... +|.|||.|+.++.+++.+++++++.+++++|..+|
T Consensus 402 lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~i 481 (657)
T KOG0446|consen 402 LFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPVLYSELVEIASSLIAEGLDETKKAVKNLI 481 (657)
T ss_pred ccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876 79999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCCccchH-HHHHHHHhhhhcCCCCCcccCCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCCCcch
Q 004228 438 EMEMDYINTSHPNFIGGSK-AVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPTV 516 (767)
Q Consensus 438 ~~E~~yInT~hpdF~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 516 (767)
+||.+||||.||||+++.+ ++...... +.+ ...++. +.
T Consensus 482 ~~e~~yinT~h~df~~~~~~al~~~~~~--~~~--------------------------------~~~~~~-~~------ 520 (657)
T KOG0446|consen 482 DLEQSYLNTDHPDFRSLTDSALSSVTSP--SIA--------------------------------AMKLIS-AQ------ 520 (657)
T ss_pred HHHHHHhcCcChhhhhhHHHHHHHhhcc--ccc--------------------------------cccccc-cc------
Confidence 9999999999999999875 33222110 000 000000 00
Q ss_pred hhcccCCCCCCCCCCCccccccCCCCCCCCCCCCcCCCCCCCCCchhhhhHHhhhhcCCCCccCCCCCCCchhHHHHHHH
Q 004228 517 EVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENVEIAV 596 (767)
Q Consensus 517 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~e~~Ei~~ 596 (767)
.. .......++....+.+ ....+.+...+..+......++++..+++.
T Consensus 521 ----~~--~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (657)
T KOG0446|consen 521 ----LL--KEELGECNSALKAIKN--------------------------AVGSIRLDPSDIVLSRALVLKKRECKETEE 568 (657)
T ss_pred ----cc--ccccccccchhhhhcc--------------------------hhhhhhhcccchhhhhhhhcchhhhHHHHH
Confidence 00 0000000000000100 000022233344444455667788899999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004228 597 TKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYR-ENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFR 675 (767)
Q Consensus 597 ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~-~~~~~eLL~E~~~ia~kR~~l~~~l~~L~qA~~ 675 (767)
|+.++.|||+||+|+|+|+|||+|||||||.+++.||++|+++||+ .+.+++||+|+|.++.+|++|++|+++|++|..
T Consensus 569 i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~~~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~~ 648 (657)
T KOG0446|consen 569 ISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAGDEQLESLLKEDPRIKRRRELQQKRLLALQKALS 648 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHcccCcc
Q 004228 676 TLDELPLE 683 (767)
Q Consensus 676 iL~ev~~~ 683 (767)
+|..+...
T Consensus 649 ii~~~~~~ 656 (657)
T KOG0446|consen 649 ILATVAQA 656 (657)
T ss_pred HHHHHhcc
Confidence 99887653
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=6.6e-61 Score=515.41 Aligned_cols=287 Identities=46% Similarity=0.777 Sum_probs=254.4
Q ss_pred HHHHHcCCCCCcccceEEEEeCChhhhhcccCHHHHHHHHHHhhccCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHh
Q 004228 174 ARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPG 253 (767)
Q Consensus 174 ~~~iL~g~~~~LklGy~~V~nrsq~di~~~~s~~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~Ls~iL~~hI~~~LP~ 253 (767)
++++|+|+++||+||||+|+||||+||+.+.|+++|++.|++||++||+|+.++++|||++|+.+|+++|.+||+++||.
T Consensus 1 ~~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~ 80 (295)
T PF01031_consen 1 AMDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPS 80 (295)
T ss_dssp SHHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcH
Confidence 46899999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCC-ChhhHHHHHHHHHHHHHHHHhhhccCCcc-cCCcccccccchHHHHHHHHHHHhh
Q 004228 254 LKSRISSALVSVAKEHASYGEITE-SKAGQGALLLNILSKYSEAFSSMVEGKNE-EMSTSELSGGARIHYIFQSIFVKSL 331 (767)
Q Consensus 254 l~~~I~~~L~~~~~eL~~lG~~~~-~~~~~~~~Ll~~i~~F~~~~~~~i~G~~~-~~~~~~l~ggaRi~~if~~~F~~~l 331 (767)
|+.+|++.|.+++.+|+.||++++ +..+++.+|++++++|++.++++|+|.|. +..+.++.||+||+++|++.|...+
T Consensus 81 l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~ 160 (295)
T PF01031_consen 81 LKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFL 160 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhh
Confidence 999999999999999999999998 77789999999999999999999999998 4678899999999999999999999
Q ss_pred hhcCCCCCCchHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhhccccchhHH
Q 004228 332 EEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLR 411 (767)
Q Consensus 332 ~~~~p~~~l~~~dI~~~I~n~~G~~~p~fvp~~~fe~Lvr~qI~~l~~Pa~~c~~~V~~el~~i~~~~~~~~~~rfp~L~ 411 (767)
..++++..+++++|+++|++++|+++|||+|+.+|+.||++||++|++||++|++.|+++|.+++.+|+.++|.+||.|+
T Consensus 161 ~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~ 240 (295)
T PF01031_consen 161 EKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLK 240 (295)
T ss_dssp HHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHH
T ss_pred hhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhcccCCCCCCCccchHHHHH
Q 004228 412 KRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEI 460 (767)
Q Consensus 412 ~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~yInT~hpdF~~~~~a~~~ 460 (767)
+++.+++.++++++.++|+++|++||+||++||||+||+|+++..++..
T Consensus 241 ~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~~~~~~~ 289 (295)
T PF01031_consen 241 EAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGELQAIRQ 289 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TTS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998766543
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=3.9e-39 Score=335.29 Aligned_cols=178 Identities=65% Similarity=1.026 Sum_probs=166.1
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccc
Q 004228 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFL 102 (767)
Q Consensus 23 ~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~ 102 (767)
+.+++++|+|++++.++|+++.++||+|||||+||+|||||||+|+|..|+|+++|+|||||++++|++. .++|++|+
T Consensus 2 ~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~--~~~~~~~~ 79 (240)
T smart00053 2 EKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS--STEYAEFL 79 (240)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC--CCcceEEE
Confidence 6799999999998778999999999999999999999999999999999999999999999999999986 45899999
Q ss_pred cCCCCcccChhHHHHHHHHHHhhhhcCCc---------------------------------------------------
Q 004228 103 HLPGKRFYDFSEIRREIQAQTDKEAGGNK--------------------------------------------------- 131 (767)
Q Consensus 103 ~~pg~~~~d~~~i~~~i~~~t~~~~g~n~--------------------------------------------------- 131 (767)
+.+++.+.||+++++.|+.++++..|.++
T Consensus 80 ~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi 159 (240)
T smart00053 80 HCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFI 159 (240)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999998875543221
Q ss_pred ---------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhhc
Q 004228 132 ---------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMF 202 (767)
Q Consensus 132 ---------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~~ 202 (767)
|++|+.|+++++++++|+++||.|.|||||+||+|.+++|+++.++++|+.++|+||||+|+||+|+|++.
T Consensus 160 ~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~nr~~~d~~~ 239 (240)
T smart00053 160 SKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIEG 239 (240)
T ss_pred hCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEECCChHHhhc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999864
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.95 E-value=8.9e-27 Score=254.75 Aligned_cols=355 Identities=23% Similarity=0.361 Sum_probs=237.1
Q ss_pred CCCchHHHHHHHHHHHHHhCCC--CCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCC-CccCcceeehhcccCCccc
Q 004228 21 LGGSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEE 97 (767)
Q Consensus 21 ~~~~~i~lin~L~d~~~~~G~~--~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g-~~TR~Pl~l~l~~~~~~~~ 97 (767)
+..++|+++..+-|+|+..+.+ ..-.||++||||||||||+||||.|..-..+|||+| +.||.|+.++|...|. .
T Consensus 280 lKkSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPy--H 357 (980)
T KOG0447|consen 280 LKKSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPH--H 357 (980)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcc--h
Confidence 5568999999999999876544 334899999999999999999999999999999998 8999999999987753 3
Q ss_pred ccccccCC----CCcccChhHHHHHHHHHHhhhh----------------c-----------------------------
Q 004228 98 YGEFLHLP----GKRFYDFSEIRREIQAQTDKEA----------------G----------------------------- 128 (767)
Q Consensus 98 ~~~f~~~p----g~~~~d~~~i~~~i~~~t~~~~----------------g----------------------------- 128 (767)
.+.|-+.. -.+.+|+..+|.+++-.+..-. |
T Consensus 358 VAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~ 437 (980)
T KOG0447|consen 358 VALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKET 437 (980)
T ss_pred hhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHH
Confidence 33333221 1133456667776664432110 0
Q ss_pred ---------CCc------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcc---c-HHHHHcCCCCCcc-cc
Q 004228 129 ---------GNK------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT---D-ARNLLLGKVIPLR-LG 188 (767)
Q Consensus 129 ---------~n~------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gt---d-~~~iL~g~~~~Lk-lG 188 (767)
+|. +-+..+|.+.|..-+++..+||.|.|||.||||.|+.++.- + ..+||.|+.+|++ ||
T Consensus 438 I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALG 517 (980)
T KOG0447|consen 438 IFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALG 517 (980)
T ss_pred HHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcc
Confidence 011 33455677788888999999999999999999999998632 2 4689999999999 99
Q ss_pred eEEEEeCChhhhhcccCHHHHHHHHHHhhccCCCCCC--c-ccccChhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 004228 189 YVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNG--L-ADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSV 265 (767)
Q Consensus 189 y~~V~nrsq~di~~~~s~~ea~~~E~~FF~~~~~~~~--l-~~~~Gi~~L~~~Ls~iL~~hI~~~LP~l~~~I~~~L~~~ 265 (767)
||+|+.-.- +...||++.++.|++||.++..++. + ++.+.+.+|.-..+.-++..+++++-.-.+......-.+
T Consensus 518 YfaVVTGrG---nssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkAtrFNL 594 (980)
T KOG0447|consen 518 YFAVVTGKG---NSSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKATRFNL 594 (980)
T ss_pred eeEEEecCC---CcchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999875322 1345899999999999999876654 2 578999999999999999999999888888888777777
Q ss_pred HHHHHH-cCCCCCChh----h-HHHHHHHHHH--------HHHHHHhhhccCCcccCCcccccccchHH-HHHHHHHHHh
Q 004228 266 AKEHAS-YGEITESKA----G-QGALLLNILS--------KYSEAFSSMVEGKNEEMSTSELSGGARIH-YIFQSIFVKS 330 (767)
Q Consensus 266 ~~eL~~-lG~~~~~~~----~-~~~~Ll~~i~--------~F~~~~~~~i~G~~~~~~~~~l~ggaRi~-~if~~~F~~~ 330 (767)
+.|.+. ++.-+.... + .+..++.-+- ++.+.+++.+- + ||. ..|++.+...
T Consensus 595 EtEWKNnfpRlRel~RdELfdKAkgEILDEvi~lsqv~~k~w~e~l~~~~~---e-----------~vs~~~~~~~~lpa 660 (980)
T KOG0447|consen 595 ETEWKNNYPRLRELDRNELFEKAKNEILDEVISLSQVTPKHWEEILQQSLW---E-----------RVSTHVIENIYLPA 660 (980)
T ss_pred hhhhhhcChHhhhcChHHHHHHhhhhHHHHHHhhhhcChhhHHHHHHHHHH---H-----------Hhhhhhhhhccchh
Confidence 777664 333232211 1 1122222111 11111111110 0 000 1122222111
Q ss_pred hhhcCCCCCCchHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 004228 331 LEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKIS 396 (767)
Q Consensus 331 l~~~~p~~~l~~~dI~~~I~n~~G~~~p~fvp~~~fe~Lvr~qI~~l~~Pa~~c~~~V~~el~~i~ 396 (767)
-..++.-+..+.-||+ +.......+|.-.-+.+|+.|-..+.....+|+-+-.+.|++.|...+
T Consensus 661 A~~~~sg~FnttvdIk--lk~w~DKqL~~k~ve~~w~tl~e~f~r~~~~~~~k~hd~ifd~lkeav 724 (980)
T KOG0447|consen 661 AQTMNSGTFNTTVDIK--LKQWTDKQLPNKAVEVAWETLQEEFSRFMTEPKGKEHDDIFDKLKEAV 724 (980)
T ss_pred hhcccccccceeehhh--hhhhhhhhcchhhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 1122222233334443 122222334444447899999888888888888888888888877765
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.93 E-value=4.1e-26 Score=204.22 Aligned_cols=91 Identities=38% Similarity=0.666 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHHHHHH
Q 004228 590 ENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRV 669 (767)
Q Consensus 590 e~~Ei~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~ia~kR~~l~~~l~~ 669 (767)
|..+++.|+.|+.|||+||+|+++|+|||+|||||||.+++.||++|+++||+++.+++||+|||+|++||++|++++++
T Consensus 2 e~~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 2 EDSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEELLDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 35688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccc
Q 004228 670 LQQAFRTLDEL 680 (767)
Q Consensus 670 L~qA~~iL~ev 680 (767)
|++|.++|++|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 6
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.88 E-value=1.6e-22 Score=181.27 Aligned_cols=92 Identities=43% Similarity=0.706 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHHHHH
Q 004228 589 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLR 668 (767)
Q Consensus 589 ~e~~Ei~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~ia~kR~~l~~~l~ 668 (767)
+|..+++.|+.+++|||+||+|||.|+|||+|+||||+.+++.|+.+|+..||..+.+++||+|||+|+.+|++|+++++
T Consensus 1 ~e~~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~~~~Ll~Ed~~i~~kR~~l~~~~~ 80 (92)
T PF02212_consen 1 REQREVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEEDLEELLQEDPEIAEKREELKKKLE 80 (92)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGCCCCT--GHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccc
Q 004228 669 VLQQAFRTLDEL 680 (767)
Q Consensus 669 ~L~qA~~iL~ev 680 (767)
+|++|.++|++|
T Consensus 81 ~L~~A~~~L~~~ 92 (92)
T PF02212_consen 81 RLKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 999999999875
No 7
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=2.2e-13 Score=136.85 Aligned_cols=123 Identities=21% Similarity=0.298 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChh-HHHHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS-EIRREIQAQT 123 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~-~i~~~i~~~t 123 (767)
-++|+||++|++|+||||+||+|+|.+-|.|.+.+ |-.+|+.|....+....|+++||++|...+ +.+++|....
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSkt----PGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKT----PGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCC----CCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 38999999999999999999999999888999875 444677777643343558999999998765 5788899999
Q ss_pred hhhhcCCc-------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcc
Q 004228 124 DKEAGGNK-------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 172 (767)
Q Consensus 124 ~~~~g~n~-------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gt 172 (767)
..|+..+. ++++...+...| .+|...+...|..++.|+||+|++..+.
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 98887654 556666555545 3788888888999999999999998664
No 8
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.46 E-value=3.3e-11 Score=139.47 Aligned_cols=442 Identities=24% Similarity=0.267 Sum_probs=301.1
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhhcccCHHHHHH
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALV 211 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~~~~s~~ea~~ 211 (767)
.+.++.|.++..+...++..++ |.||.+.++.+++.... +..|++.++|..+.++...++...+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (546)
T COG0699 97 GIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDALETDIQLLKTALEALV 162 (546)
T ss_pred chhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCchhHHHHhcccchHHHH
Confidence 5577888899999999999887 88999988877654332 678889999999999998888888889
Q ss_pred HHHHhhccCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHH
Q 004228 212 AEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILS 291 (767)
Q Consensus 212 ~E~~FF~~~~~~~~l~~~~Gi~~L~~~Ls~iL~~hI~~~LP~l~~~I~~~L~~~~~eL~~lG~~~~~~~~~~~~Ll~~i~ 291 (767)
.|..+|..++.|.+....++.+++...+++++..|++...|............ .+++. .++....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---------~~~~~~~ 227 (546)
T COG0699 163 KELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN---------EVLAVIQ 227 (546)
T ss_pred HHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch---------HHHHHHH
Confidence 99999999999999888999999999999999999999999876665544432 22221 4455666
Q ss_pred HHHHHHhhhccCCcccCCcccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCCCCCCCCcHHHHHHHH
Q 004228 292 KYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIR 371 (767)
Q Consensus 292 ~F~~~~~~~i~G~~~~~~~~~l~ggaRi~~if~~~F~~~l~~~~p~~~l~~~dI~~~I~n~~G~~~p~fvp~~~fe~Lvr 371 (767)
.|...++.. .+|.|++.. ...+++...+.+..+.....+..|.+...|.....+..++.
T Consensus 228 ~~~~~~~~~-------------~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (546)
T COG0699 228 TLLKRLSEL-------------VRGARIRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGLTLLDTLVE 286 (546)
T ss_pred HHHHHHHHH-------------hccchhhhh--------hcccchHHHhhhhhhHHHHHcccCCCccccccccchhhhhH
Confidence 666666622 244455544 12233344445556666666777777768888899999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhhhh-hhccccchhHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhcccCCCCCC
Q 004228 372 RQIARLLDPSLQCARFIYDELMKISHHCL-VNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPN 450 (767)
Q Consensus 372 ~qI~~l~~Pa~~c~~~V~~el~~i~~~~~-~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~yInT~hpd 450 (767)
.++..+..+..+|...+..++.+++.... ......|+.+...+...+.++..+.....+..+...++.+..|++|.||.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (546)
T COG0699 287 TPIGQFDTQINQLLRKLISELVRILLKELESASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEERYINTKHPL 366 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999998898889999988855443 34468899999999999999999999999999999999999999999999
Q ss_pred CccchHHHHHHHHhhhhcC--C-CCCcccCCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCCCcchhhcccCCCCCC
Q 004228 451 FIGGSKAVEIALQQIKSSK--V-PLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPTVEVEKVAPAGNT 527 (767)
Q Consensus 451 F~~~~~a~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (767)
|+....+........-... . ........+- .. ............. ... ...+...
T Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~----~~~----~~~~~~~------------ 424 (546)
T COG0699 367 FLSLRQAAAILSKVLDNLEALLRSLDDSRLREL-SD-MGLNSLLSNNLEE----HLL----GSDFSLY------------ 424 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccch-hh-cccchhHHHHHHH----Hhh----cchhhHH------------
Confidence 9987666655433211100 0 0000000000 00 0000000000000 000 0000000
Q ss_pred CCCCCccccccCCCCCCCCCCCCcCCCCCCCCCchhhhhHHhhhhcCCCCccCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 004228 528 SGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENVEIAVTKLLLRSYYDI 607 (767)
Q Consensus 528 ~~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~e~~Ei~~ir~Lv~SYF~I 607 (767)
.+++ .+.+. . +.. ..-... .... ..+ ......+...+...++.++.+| .+
T Consensus 425 --~~~~---~~~~~----~--~~~----~~~~~~--~~~~---~~~---------~~~~~~~~~~~~~~i~~l~~~~-~~ 474 (546)
T COG0699 425 --KFLN---EFLEL----K--KLD----ALLATL--GEAL---RRL---------TGLLPERKTLEKQLIKSLLESL-LI 474 (546)
T ss_pred --HHHH---HHhhh----c--cch----hhhccc--hHHH---HHh---------hcccchhhhhhhHHHHHHHHHH-HH
Confidence 0000 00000 0 000 000000 0000 000 0111112233334458999999 99
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004228 608 VRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFR 675 (767)
Q Consensus 608 VrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~ia~kR~~l~~~l~~L~qA~~ 675 (767)
+.+.+.|.|+++++.++.+..+...+......+|.....+++..+.+.+.+.|..+.+.++.+.++..
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 475 LAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQLEDELLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888888999999999999999999999999999999998865
No 9
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.43 E-value=5.3e-13 Score=130.90 Aligned_cols=116 Identities=36% Similarity=0.471 Sum_probs=86.2
Q ss_pred EEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcc--cccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDE--EYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~--~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
|+|+|.+|||||||||||+|.+.+|.+.+.||++|++++....+... .+..........+.++.++++.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 79999999999999999999999999999999999999987765422 1110000113355677777776665443221
Q ss_pred c----------------------------------------------CCc----cccCCCcccccHHHHHHHHhCcCCCc
Q 004228 128 G----------------------------------------------GNK----VTPANSDLANSDALQIAGIADPDGYR 157 (767)
Q Consensus 128 g----------------------------------------------~n~----V~~a~~D~ans~aL~la~~vDP~G~R 157 (767)
+ ... |++++.++.+++...+.+.+++.+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR 160 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe
Confidence 1 000 78999999999999999999999999
Q ss_pred eEEEeecc
Q 004228 158 TIGIITKL 165 (767)
Q Consensus 158 TIGVlTK~ 165 (767)
+|+|+||.
T Consensus 161 ~i~V~nk~ 168 (168)
T PF00350_consen 161 TIFVLNKA 168 (168)
T ss_dssp EEEEEE-G
T ss_pred EEEEEcCC
Confidence 99999995
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.80 E-value=3.2e-09 Score=118.18 Aligned_cols=162 Identities=20% Similarity=0.357 Sum_probs=103.5
Q ss_pred CCchHHHHHHHHHHHHHhCCC-CC---CCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQ-ST---IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDE 96 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~-~~---i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~ 96 (767)
|..+-+|++.+-..+- .... .. .+.-+|++||..|+|||||+|+|+|....-++. .+.||.++...+.... .
T Consensus 150 g~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~ 226 (444)
T COG1160 150 GRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--R 226 (444)
T ss_pred ccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--e
Confidence 3445556666654431 1111 11 245799999999999999999999999888875 5789999887776442 2
Q ss_pred cccccccCCCCcccChhHHHHH--HHHHHhhh---------hcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEe
Q 004228 97 EYGEFLHLPGKRFYDFSEIRRE--IQAQTDKE---------AGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGII 162 (767)
Q Consensus 97 ~~~~f~~~pg~~~~d~~~i~~~--i~~~t~~~---------~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVl 162 (767)
.| .|++ ..++|+. |....+.+ --.|. |++|...+..|| +++|..+...|.-.|.|+
T Consensus 227 ~~-~liD--------TAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~~g~~~vIvv 296 (444)
T COG1160 227 KY-VLID--------TAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-LRIAGLIEEAGRGIVIVV 296 (444)
T ss_pred EE-EEEE--------CCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHHcCCCeEEEE
Confidence 33 2332 2223221 11111111 11232 778999999999 688999999999999999
Q ss_pred eccCCCCCcccHHHH----HcCCCCCcccceEEEEeCChh
Q 004228 163 TKLDIMDRGTDARNL----LLGKVIPLRLGYVGVVNRSQE 198 (767)
Q Consensus 163 TK~Dl~d~gtd~~~i----L~g~~~~LklGy~~V~nrsq~ 198 (767)
+|||+++..+..++. |.-+.. .++|-.+.+-|..
T Consensus 297 NKWDl~~~~~~~~~~~k~~i~~~l~--~l~~a~i~~iSA~ 334 (444)
T COG1160 297 NKWDLVEEDEATMEEFKKKLRRKLP--FLDFAPIVFISAL 334 (444)
T ss_pred EccccCCchhhHHHHHHHHHHHHhc--cccCCeEEEEEec
Confidence 999999874333322 222222 2677777776654
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.67 E-value=5.3e-07 Score=101.01 Aligned_cols=169 Identities=21% Similarity=0.258 Sum_probs=94.0
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCC-CCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCccccc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQSTI-ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYG 99 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~~~i-~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~ 99 (767)
..++-.+.+.|.++++.......+ +=-.||+||.+|+|||||||||+|.+.-.+.+ -++||.-++-.+.
T Consensus 191 ~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~--------- 261 (454)
T COG0486 191 REKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDIN--------- 261 (454)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEE---------
Confidence 344555666666666544333333 44589999999999999999999998755544 4678866654432
Q ss_pred ccccCCCC--cccChhHHHH-------H-HHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccC
Q 004228 100 EFLHLPGK--RFYDFSEIRR-------E-IQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 166 (767)
Q Consensus 100 ~f~~~pg~--~~~d~~~i~~-------~-i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~D 166 (767)
+.|. ...|..+||+ . |+..-...-..+- |++++..+...+- .+.. .-+.+.++|.|+||.|
T Consensus 262 ----i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~-~~~~~~~~i~v~NK~D 335 (454)
T COG0486 262 ----LNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE-LLPKKKPIIVVLNKAD 335 (454)
T ss_pred ----ECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH-hcccCCCEEEEEechh
Confidence 2222 1223333331 1 2222222112222 6677775444442 2222 4467899999999999
Q ss_pred CCCCcccHHHHHcCCCCCcccceEEEEeCChhhhhcccCHHHHHHHH
Q 004228 167 IMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAE 213 (767)
Q Consensus 167 l~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~~~~s~~ea~~~E 213 (767)
++.+...... ...-+.-++.+.....+.++. ++++....
T Consensus 336 L~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~---L~~~i~~~ 374 (454)
T COG0486 336 LVSKIELESE-----KLANGDAIISISAKTGEGLDA---LREAIKQL 374 (454)
T ss_pred cccccccchh-----hccCCCceEEEEecCccCHHH---HHHHHHHH
Confidence 9976542111 111122245565555555442 55555443
No 12
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.49 E-value=8.2e-07 Score=89.03 Aligned_cols=136 Identities=20% Similarity=0.273 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhCCC--CCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCC--CccCcceeehhcccCCcccccccccC
Q 004228 29 VNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHL 104 (767)
Q Consensus 29 in~L~d~~~~~G~~--~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g--~~TR~Pl~l~l~~~~~~~~~~~f~~~ 104 (767)
+.++++.-+...++ ..=.+|.|+|||.+++||||||++|+|.+|.+..++ .|||.+..... +.--.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~l~l~Dt 77 (196)
T PRK00454 4 IHNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV------NDKLRLVDL 77 (196)
T ss_pred hhHHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec------CCeEEEeCC
Confidence 34445443333333 223789999999999999999999999876666554 36664432221 112346788
Q ss_pred CCCcccCh-hHHHHHHHHHHhhhhcCCc-------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 105 PGKRFYDF-SEIRREIQAQTDKEAGGNK-------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 105 pg~~~~d~-~~i~~~i~~~t~~~~g~n~-------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
||...... ...++++......+..... |+++.......+ ..+.+.++..|...+.|+||+|+++.+
T Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 78 PGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred CCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH-HHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 88543222 1233344333333322111 334433332222 344455555688899999999998644
No 13
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.44 E-value=3.4e-06 Score=90.15 Aligned_cols=116 Identities=17% Similarity=0.105 Sum_probs=67.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
.|+|||..|||||||+++|+|.++-.+.. ..+||.++.-..... +.--.|++.||.... ...+.+.+...+...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~---~~qii~vDTPG~~~~-~~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG---ASQIIFIDTPGFHEK-KHSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC---CcEEEEEECcCCCCC-cchHHHHHHHHHHHHH
Confidence 58999999999999999999997543333 357887653222111 112457899985432 1222222222222222
Q ss_pred -cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 128 -GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 128 -g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+.+- |++++..... + ..+...+...+..+|.|+||.|+.++
T Consensus 78 ~~aDvvl~VvD~~~~~~~-~-~~i~~~l~~~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNGD-G-EFVLTKLQNLKRPVVLTRNKLDNKFK 122 (270)
T ss_pred hhCCEEEEEEECCCCCch-H-HHHHHHHHhcCCCEEEEEECeeCCCH
Confidence 2222 5555432222 1 23344444467899999999999853
No 14
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.42 E-value=1e-06 Score=87.75 Aligned_cols=119 Identities=22% Similarity=0.292 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCC--CccCcceeehhcccCCcccccccccCCCCcccChh-HHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS-EIRREIQA 121 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g--~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~-~i~~~i~~ 121 (767)
-..|.|+|||..++||||++++|+|..|++..++ .+|+-+..... . .. -.|++.||....... ..+..+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~--~~-~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N--DG-FRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C--Cc-EEEEeCCCCccccCChhHHHHHHH
Confidence 5789999999999999999999999876555443 35653322111 0 11 346788986443221 12233333
Q ss_pred HHhhhhc-C---Cc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 122 QTDKEAG-G---NK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 122 ~t~~~~g-~---n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
....+.. . +- |++++..+..++ .++.+.++..|.+.|+|+||+|+++.
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~-~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELD-LEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCCH
Confidence 3222221 1 11 666666665555 35566677789999999999999864
No 15
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.41 E-value=1.3e-06 Score=96.95 Aligned_cols=123 Identities=19% Similarity=0.201 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHh
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~ 124 (767)
-..|+|++||..|+||||||++|+|..+...+.-..|+-|+.-.+.-. .. .-..|.+.+|..-.....+.+.+....+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~-~~-~~i~l~DT~G~~~~l~~~lie~f~~tle 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DG-GEVLLTDTVGFIRDLPHELVAAFRATLE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC-CC-ceEEEEecCcccccCCHHHHHHHHHHHH
Confidence 367999999999999999999999998644444567888865444321 11 1234567777411112223333333323
Q ss_pred hhhcCCc---cccCCCcccccH---HHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 125 KEAGGNK---VTPANSDLANSD---ALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 125 ~~~g~n~---V~~a~~D~ans~---aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+...+- |+++........ ..++.+++.-.+...|.|+||+|+.+
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 3333332 555543221111 13556666555789999999999975
No 16
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.39 E-value=1.7e-06 Score=79.95 Aligned_cols=110 Identities=22% Similarity=0.274 Sum_probs=67.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHH-HHHHHHHhhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIR-REIQAQTDKE 126 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~-~~i~~~t~~~ 126 (767)
+|+|+|..++|||||+++|+|.+....+. ..|||.+..-.. .. ....-.|++.||-......... +.+....+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~-~~--~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQF-EY--NNKKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEE-EE--TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeee-ee--ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 68999999999999999999975445544 478998843111 11 1233368899985443322221 1222222222
Q ss_pred hcCCc----cccCCCcccccHHHHHHHHhCcCCCceEEEeec
Q 004228 127 AGGNK----VTPANSDLANSDALQIAGIADPDGYRTIGIITK 164 (767)
Q Consensus 127 ~g~n~----V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK 164 (767)
..-. |+.++. ..+.....+.+++. .+.++|.|+||
T Consensus 78 -~~~d~ii~vv~~~~-~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASN-PITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTS-HSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCC-CCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 2112 566555 33344456777776 89999999998
No 17
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.39 E-value=2e-06 Score=87.32 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHh
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~ 124 (767)
-..|.|+|||..+|||||||++|+|..+.+.+....|..|....+... . .....|.+.||........+...+.....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-D-GREVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-C-CceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 357999999999999999999999987655555555655543222211 1 11234567788532212222222222222
Q ss_pred hhhcCCc---cccCCCccccc---HHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 125 KEAGGNK---VTPANSDLANS---DALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 125 ~~~g~n~---V~~a~~D~ans---~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
.+...+. |+++....... ...++.+.+...+...|.|+||.|+.+.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 2222222 44444322211 2245666666667899999999999753
No 18
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.39 E-value=2.6e-07 Score=90.83 Aligned_cols=112 Identities=23% Similarity=0.261 Sum_probs=69.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCC-cccChhHHHHHHHHHHhhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK-RFYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~-~~~d~~~i~~~i~~~t~~~ 126 (767)
+|++||..|+|||||+|+|+|... .+++ .++|+.+.+-.+... ....+|+++||- .+...++ .+.+... ..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~---~~~~~lvDlPG~ysl~~~s~-ee~v~~~--~l 74 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLG---DQQVELVDLPGIYSLSSKSE-EERVARD--YL 74 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEET---TEEEEEEE----SSSSSSSH-HHHHHHH--HH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEec---CceEEEEECCCcccCCCCCc-HHHHHHH--HH
Confidence 699999999999999999999984 4543 467776655444432 244678999993 3332221 1111111 11
Q ss_pred hcCCc-----cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 127 AGGNK-----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 127 ~g~n~-----V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
..... |++|+. + ...|.|..++-..|.++|.|+||+|...+
T Consensus 75 ~~~~~D~ii~VvDa~~-l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATN-L--ERNLYLTLQLLELGIPVVVVLNKMDEAER 120 (156)
T ss_dssp HHTSSSEEEEEEEGGG-H--HHHHHHHHHHHHTTSSEEEEEETHHHHHH
T ss_pred hhcCCCEEEEECCCCC-H--HHHHHHHHHHHHcCCCEEEEEeCHHHHHH
Confidence 11111 555543 3 34467888888889999999999999863
No 19
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.31 E-value=2.2e-06 Score=82.32 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=70.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC--ccCcceeehhcccCCcccccccccCCCCcccChh-HHHHHHHHHHhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS-EIRREIQAQTDK 125 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~--~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~-~i~~~i~~~t~~ 125 (767)
+|++||+.+||||||+++|++..+.+..++. +|+.+..... +....|++.||..+...+ ..++.+......
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 74 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV------NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEE 74 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc------cCeEEEecCCCccccccCHHHHHHHHHHHHH
Confidence 5899999999999999999966667777664 4554322222 124456788885544221 233333333333
Q ss_pred hhc-C-Cc-----cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 126 EAG-G-NK-----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 126 ~~g-~-n~-----V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
+.. . +- |++...+. +..-.++++.++..+...+.|+||+|++..+
T Consensus 75 ~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 75 YLENRENLKGVVLLIDSRHGP-TEIDLEMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHhChhhhEEEEEEEcCcCC-CHhHHHHHHHHHHcCCCEEEEEEchhcCChH
Confidence 221 1 11 33333332 2333456666666678899999999998654
No 20
>PRK11058 GTPase HflX; Provisional
Probab=98.31 E-value=2.7e-06 Score=96.68 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccC-hhHHHHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD-FSEIRREIQAQT 123 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d-~~~i~~~i~~~t 123 (767)
-.+|.|++||.+|||||||+++|+|.++.....-.+|+-|+.-.+.-. . ..-..+.+.+|. +.+ ...+...+....
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~-~-~~~~~l~DTaG~-~r~lp~~lve~f~~tl 271 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA-D-VGETVLADTVGF-IRHLPHDLVAAFKATL 271 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC-C-CCeEEEEecCcc-cccCCHHHHHHHHHHH
Confidence 367999999999999999999999988643233367887765333211 1 111246678885 111 122223333332
Q ss_pred hhhhcCCc---cccCCCcccccH---HHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 124 DKEAGGNK---VTPANSDLANSD---ALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 124 ~~~~g~n~---V~~a~~D~ans~---aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
..+...+- |+++........ ..++..++...+.+.|.|+||+|+.+
T Consensus 272 ~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 272 QETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 33223332 555543211111 13456666666789999999999974
No 21
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.30 E-value=7.4e-05 Score=85.50 Aligned_cols=143 Identities=20% Similarity=0.181 Sum_probs=79.3
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGE 100 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~ 100 (767)
...+-.+.+.|.+++........-+-.+||+||..|+|||||+++|+|.++-.+. -.++||.+.+..+... ...+ .
T Consensus 178 ~~~l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v-~ 254 (442)
T TIGR00450 178 NQLLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILI-K 254 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEE-E
Confidence 3345556666666665552222235579999999999999999999998642232 2356776554433321 1122 4
Q ss_pred cccCCCCcccChhHHHHH-HHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 101 FLHLPGKRFYDFSEIRRE-IQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 101 f~~~pg~~~~d~~~i~~~-i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+.+.||....+ +.+.+. +......+...+- |++++....-.+ . +...+...+...|.|+||.|+.+.
T Consensus 255 l~DTaG~~~~~-~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~-~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 255 LLDTAGIREHA-DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDD-F-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred EeeCCCcccch-hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhH-H-HHHHHhhCCCCEEEEEECccCCCc
Confidence 67788853211 112111 1111111112222 555544332222 2 445555557899999999999754
No 22
>PRK00089 era GTPase Era; Reviewed
Probab=98.29 E-value=1.2e-05 Score=86.52 Aligned_cols=116 Identities=22% Similarity=0.236 Sum_probs=66.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC-CccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g-~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
-|+|||..||||||||++|+|.++...... .+||..+.-... . .+.--.|++.||..... ..+.+.+........
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~-~--~~~qi~~iDTPG~~~~~-~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT-E--DDAQIIFVDTPGIHKPK-RALNRAMNKAAWSSL 82 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE-c--CCceEEEEECCCCCCch-hHHHHHHHHHHHHHH
Confidence 489999999999999999999976444432 345554322111 1 11224577889853221 223332222222222
Q ss_pred -cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 128 -GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 128 -g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.+. |+++...+... ...+++.+-..+.+.|.|+||.|+..
T Consensus 83 ~~~D~il~vvd~~~~~~~~-~~~i~~~l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPG-DEFILEKLKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred hcCCEEEEEEeCCCCCChh-HHHHHHHHhhcCCCEEEEEECCcCCC
Confidence 2222 55665534332 23444444445789999999999984
No 23
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.24 E-value=4.2e-06 Score=93.69 Aligned_cols=114 Identities=24% Similarity=0.270 Sum_probs=77.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCccccc----ccccCCCCcccChhHHHHHHHHH
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYG----EFLHLPGKRFYDFSEIRREIQAQ 122 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~----~f~~~pg~~~~d~~~i~~~i~~~ 122 (767)
|.||+||+.|+|||||+|.|+|.+.--+.+ -++||.++.-. -+|. ..++..|-...+-+++.+++.+-
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~-------~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Q 76 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGD-------AEWLGREFILIDTGGLDDGDEDELQELIREQ 76 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccce-------eEEcCceEEEEECCCCCcCCchHHHHHHHHH
Confidence 899999999999999999999997544433 47899765322 2343 23466665444434566555554
Q ss_pred HhhhhcCCc----cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 123 TDKEAGGNK----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 123 t~~~~g~n~----V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+..-+.+-. |+++...+...| ..+|+.+-+.+..+|.|++|+|..+
T Consensus 77 a~~Ai~eADvilfvVD~~~Git~~D-~~ia~~Lr~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 77 ALIAIEEADVILFVVDGREGITPAD-EEIAKILRRSKKPVILVVNKIDNLK 126 (444)
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHhcCCCEEEEEEcccCch
Confidence 443332222 667776665554 4667777777899999999999873
No 24
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.20 E-value=1e-05 Score=93.30 Aligned_cols=120 Identities=19% Similarity=0.211 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcc-cChhHHHHHHHHH-
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF-YDFSEIRREIQAQ- 122 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~-~d~~~i~~~i~~~- 122 (767)
..++|+|||..++|||||+++|+|..+.... ..++||-+....+... ...+ .+.+.||..- .....-.......
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~--~~~~-~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG--GKTW-RFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC--CEEE-EEEECCCccccccccchHHHHHHHH
Confidence 5689999999999999999999998764333 3567887765444332 1223 4677787321 0000000111110
Q ss_pred Hhh-hhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 123 TDK-EAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 123 t~~-~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.. +-+.+. |+++...+..++ ++++..+...|...|.|+||+|+.+
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~-~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQD-QRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCC
Confidence 111 112222 556665554444 4666666667999999999999975
No 25
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.19 E-value=1e-05 Score=85.74 Aligned_cols=126 Identities=14% Similarity=0.071 Sum_probs=72.0
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhH-HHHHHHH
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE-IRREIQA 121 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~-i~~~i~~ 121 (767)
...-..|+|||..++||||++|+|.|.....++. ..+|+.+........ ... -.+++.||.....++. ..+.+..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--g~~-i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--GFK-LNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeE-EEEEECCCcCcchhhHHHHHHHHH
Confidence 4466799999999999999999999997655543 246665554322111 111 2578999965443322 2233333
Q ss_pred HHhhhhcC---Cc---cccCC---CcccccHHHHHHHHhCcCC--CceEEEeeccCCCCCcc
Q 004228 122 QTDKEAGG---NK---VTPAN---SDLANSDALQIAGIADPDG--YRTIGIITKLDIMDRGT 172 (767)
Q Consensus 122 ~t~~~~g~---n~---V~~a~---~D~ans~aL~la~~vDP~G--~RTIGVlTK~Dl~d~gt 172 (767)
...+++.. .. |...+ .|.....+++.+++.-... .++|.|+||+|...+..
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 33333321 11 21111 1222224555555432211 58999999999986543
No 26
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.18 E-value=1.6e-05 Score=90.16 Aligned_cols=142 Identities=18% Similarity=0.264 Sum_probs=82.1
Q ss_pred CchHHHHHHHHHHHHHhCCC--CCCCCCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCccccc
Q 004228 23 GSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYG 99 (767)
Q Consensus 23 ~~~i~lin~L~d~~~~~G~~--~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~ 99 (767)
..+-.+++.+...+..-+.. ..-....|+|||..++|||||+++|+|.++.... ..++||.+....+.... .. -
T Consensus 146 ~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~-~ 222 (429)
T TIGR03594 146 RGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KK-Y 222 (429)
T ss_pred CChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cE-E
Confidence 34555666665543221111 1123468999999999999999999998754433 34677777655543321 12 2
Q ss_pred ccccCCCCc-ccChhH-HHHHHHHHHhh-hhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 100 EFLHLPGKR-FYDFSE-IRREIQAQTDK-EAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 100 ~f~~~pg~~-~~d~~~-i~~~i~~~t~~-~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
.+++.||.. +....+ +.......+.. +...+. |+++...+..++ +++++.+...|.+.|.|+||+|++
T Consensus 223 ~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 223 LLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQD-LRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred EEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHH-HHHHHHHHHcCCcEEEEEECcccC
Confidence 456777732 111111 11100011111 112222 666666565555 467777777899999999999998
No 27
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.18 E-value=1e-05 Score=77.37 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=63.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCC-CccCcceeehhcccCCcccccccccCCCCcccChhHHHHH-HHHH-Hh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRRE-IQAQ-TD 124 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g-~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~-i~~~-t~ 124 (767)
..|+|+|..+|||||++++|.|.++.+.... .+|+......... ....-.+++.||..... ....+ +... ..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~ 78 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD---DDAQIIFVDTPGIHKPK--KKLGERMVKAAWS 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc---CCeEEEEEECCCCCcch--HHHHHHHHHHHHH
Confidence 5799999999999999999999975333322 3444333222111 11223467888854321 11111 1111 11
Q ss_pred hhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 125 KEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 125 ~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+.+.+. |+++.... ++....+++.+...+...+.|+||.|+.+
T Consensus 79 ~~~~~d~i~~v~d~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 79 ALKDVDLVLFVVDASEPI-GEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred HHHhCCEEEEEEECCCcc-CchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 1222222 44444332 22233445555545788999999999984
No 28
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.17 E-value=2.4e-05 Score=94.67 Aligned_cols=119 Identities=23% Similarity=0.287 Sum_probs=73.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcc-ccCCCccCcceeehhcccCCcccccccccCCCCc--ccChhHHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP-RGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR--FYDFSEIRREIQAQ 122 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flP-r~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~--~~d~~~i~~~i~~~ 122 (767)
+.|.|++||..++|||||+++|+|..+.. ....++||-+....+... ...+ .|++.||.. ....... +.....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~--~~~~-~liDTaG~~~~~~~~~~~-e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID--GEDW-LFIDTAGIKRRQHKLTGA-EYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC--CCEE-EEEECCCcccCcccchhH-HHHHHH
Confidence 56899999999999999999999997532 333567887765443322 1222 367888732 1111110 001100
Q ss_pred -Hhh-hhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 123 -TDK-EAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 123 -t~~-~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.. +-..+. |+++...+..++ +++++.+...|...|.|+||+|+++
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~-~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQD-LKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEEchhcCC
Confidence 111 111222 666666655554 4667777678999999999999985
No 29
>COG1159 Era GTPase [General function prediction only]
Probab=98.16 E-value=3e-05 Score=82.75 Aligned_cols=162 Identities=20% Similarity=0.233 Sum_probs=90.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
-+++||+.|+|||+|||+|+|-+...++. .-+||..+....... +.-.-|++.||-... -..+-+.+......-+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~---~~QiIfvDTPGih~p-k~~l~~~m~~~a~~sl 83 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD---NAQIIFVDTPGIHKP-KHALGELMNKAARSAL 83 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC---CceEEEEeCCCCCCc-chHHHHHHHHHHHHHh
Confidence 37999999999999999999998765554 256776654433322 233458899985433 1222222222221112
Q ss_pred cCCc----cccCCCcccccH--HHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHc--CCCCCcccceEEEEeCChhh
Q 004228 128 GGNK----VTPANSDLANSD--ALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLL--GKVIPLRLGYVGVVNRSQED 199 (767)
Q Consensus 128 g~n~----V~~a~~D~ans~--aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~--g~~~~LklGy~~V~nrsq~d 199 (767)
+.-. |++++..+..-| .+...+. ...+.|.++||.|++.+.+....+.. ....+ |--++--|+..
T Consensus 84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~----f~~ivpiSA~~ 156 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP----FKEIVPISALK 156 (298)
T ss_pred ccCcEEEEEEeccccCCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC----cceEEEeeccc
Confidence 2222 667776554433 2333443 46799999999999987664322221 12222 22333334332
Q ss_pred hhcccCHHHHHHHHHHhhccCCCCC
Q 004228 200 IMFNRSIKDALVAEEKFFRSRPVYN 224 (767)
Q Consensus 200 i~~~~s~~ea~~~E~~FF~~~~~~~ 224 (767)
+..+..-...=..++..+|+|-
T Consensus 157 ---g~n~~~L~~~i~~~Lpeg~~~y 178 (298)
T COG1159 157 ---GDNVDTLLEIIKEYLPEGPWYY 178 (298)
T ss_pred ---cCCHHHHHHHHHHhCCCCCCcC
Confidence 3334444344445666666653
No 30
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.15 E-value=0.00014 Score=83.59 Aligned_cols=139 Identities=19% Similarity=0.209 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHhCCCCC-CCCCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCccccccc
Q 004228 24 SVIPLVNKLQDIFAQLGSQST-IELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEF 101 (767)
Q Consensus 24 ~~i~lin~L~d~~~~~G~~~~-i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f 101 (767)
++-.+.++|.++.+....... -+-+.|++||..|+|||||+++|+|.++.++. ....||-+++..+... ... ..+
T Consensus 191 ~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~-i~l 267 (449)
T PRK05291 191 KLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--GIP-LRL 267 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--CeE-EEE
Confidence 344455555555443322111 23478999999999999999999998753333 3456776655443321 111 246
Q ss_pred ccCCCCcccChhH-HHHH-HHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 102 LHLPGKRFYDFSE-IRRE-IQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 102 ~~~pg~~~~d~~~-i~~~-i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
.+.||.. ++.. +... +......+...+- |+++..... .+-..+... ..+...|.|+||.|+.+.
T Consensus 268 ~DT~G~~--~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s-~~~~~~l~~--~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 268 IDTAGIR--ETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT-EEDDEILEE--LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred EeCCCCC--CCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC-hhHHHHHHh--cCCCCcEEEEEhhhcccc
Confidence 6788853 2222 2211 2211122222222 555543332 223444444 457899999999999753
No 31
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.14 E-value=2.6e-05 Score=88.84 Aligned_cols=120 Identities=23% Similarity=0.321 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcc-cChh-HHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF-YDFS-EIRREIQAQ 122 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~-~d~~-~i~~~i~~~ 122 (767)
+.+.|+|||..++||||++++|+|....+.+. .++||.++...+... ...-.+++.||..- .... .+.......
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~---~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD---GQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC---CeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 46799999999999999999999987555543 467887765554332 12235678887421 1111 111100011
Q ss_pred Hhhhh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 123 TDKEA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 123 t~~~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.+.+ ..+. |+++...+..++ .++++.+...|...|.|+||+|+.+
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~-~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQD-LRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCcEEEEEECccCCC
Confidence 11111 1122 667777766555 4677777778999999999999984
No 32
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.14 E-value=1.3e-05 Score=81.30 Aligned_cols=119 Identities=19% Similarity=0.212 Sum_probs=69.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC--CCccCcceeehhcccCCcccccccccCCCCcccC--hhHHHHHHHHHHh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD--FSEIRREIQAQTD 124 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~--g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d--~~~i~~~i~~~t~ 124 (767)
.|++||..++||||++|+|+|...+..+. ..+|+.+....... ...--.+++.||....+ -..+..++.....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~---~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW---DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE---CCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 69999999999999999999997655553 25666432211111 11223578999865432 2245544433222
Q ss_pred hhh-cCCc---cccCCCccccc--HHHHHHHHhC-cC-CCceEEEeeccCCCCCc
Q 004228 125 KEA-GGNK---VTPANSDLANS--DALQIAGIAD-PD-GYRTIGIITKLDIMDRG 171 (767)
Q Consensus 125 ~~~-g~n~---V~~a~~D~ans--~aL~la~~vD-P~-G~RTIGVlTK~Dl~d~g 171 (767)
... |... |+++.. +... .+++.++++- +. -.++|.|+||.|.+..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 111 1111 666665 5433 3355555542 11 26899999999998654
No 33
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.12 E-value=5.9e-06 Score=80.25 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=62.0
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
|.|+|||..++||||++++|++-.+.......+|+-.....+.........-.+++.||.. ++..++..- +.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~--~~~~~~~~~------~~ 72 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE--AFTNMRARG------AS 72 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH--HHHHHHHHH------Hh
Confidence 7899999999999999999999876544334455432111111100001123467788742 222222111 11
Q ss_pred cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 128 GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 128 g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
..+- |++++... .......++.+...+.+.+.|+||.|+.+
T Consensus 73 ~~d~il~v~d~~~~~-~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 73 LTDIAILVVAADDGV-MPQTIEAIKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred hcCEEEEEEECCCCc-cHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence 1121 44454332 22233333333346789999999999874
No 34
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=5.7e-05 Score=85.00 Aligned_cols=116 Identities=29% Similarity=0.327 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHH------
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRRE------ 118 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~------ 118 (767)
.=+|||++|..|+|||||||+|+..+.-.++. .++||..++....-. .... ...|..+||++
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~--G~~v---------~L~DTAGiRe~~~~~iE 335 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN--GVPV---------RLSDTAGIREESNDGIE 335 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC--CeEE---------EEEeccccccccCChhH
Confidence 44799999999999999999999998877775 478999988766422 1110 12455555542
Q ss_pred ---HHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCC------------CceEEEeeccCCCCCccc
Q 004228 119 ---IQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDG------------YRTIGIITKLDIMDRGTD 173 (767)
Q Consensus 119 ---i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G------------~RTIGVlTK~Dl~d~gtd 173 (767)
|+..-.+...... |++|+.-+..++ +++++.+--.| .|-|.|.+|.|+..+++.
T Consensus 336 ~~gI~rA~k~~~~advi~~vvda~~~~t~sd-~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~ 407 (531)
T KOG1191|consen 336 ALGIERARKRIERADVILLVVDAEESDTESD-LKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE 407 (531)
T ss_pred HHhHHHHHHHHhhcCEEEEEecccccccccc-hHHHHHHHHhccceEEEeccccccceEEEechhhccCcccc
Confidence 2222222222221 566654343333 34444433333 567777888888877543
No 35
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.06 E-value=2e-05 Score=85.02 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCC--CccCcceeehhcccCCcccccccccC
Q 004228 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHL 104 (767)
Q Consensus 27 ~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g--~~TR~Pl~l~l~~~~~~~~~~~f~~~ 104 (767)
..+++.++.++.+-. -+.++|.|||+|-.|+||||++.+|++-+ |--.. -+|+ .+.+-+......-.++++.
T Consensus 149 ~fL~~~r~~l~~LP~-Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK---~i~vGhfe~~~~R~QvIDT 222 (346)
T COG1084 149 EFLRKARDHLKKLPA-IDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTK---GIHVGHFERGYLRIQVIDT 222 (346)
T ss_pred HHHHHHHHHHhcCCC-CCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCcccc---ceeEeeeecCCceEEEecC
Confidence 445555555554432 34689999999999999999999999996 54432 3444 1333333221222356788
Q ss_pred CCCcccChhHHHHHHHH----HHhhhhcCCc--cc----cCCCcccccHHHHHHHHhCcCCC-ceEEEeeccCCCCCcc
Q 004228 105 PGKRFYDFSEIRREIQA----QTDKEAGGNK--VT----PANSDLANSDALQIAGIADPDGY-RTIGIITKLDIMDRGT 172 (767)
Q Consensus 105 pg~~~~d~~~i~~~i~~----~t~~~~g~n~--V~----~a~~D~ans~aL~la~~vDP~G~-RTIGVlTK~Dl~d~gt 172 (767)
||---..+++ |..|+. +... ++.-- ++ .|-=.++.|. .|..++-+... +++.|+||.|+++.+.
T Consensus 223 PGlLDRPl~E-rN~IE~qAi~AL~h-l~~~IlF~~D~Se~cgy~lE~Q~--~L~~eIk~~f~~p~v~V~nK~D~~~~e~ 297 (346)
T COG1084 223 PGLLDRPLEE-RNEIERQAILALRH-LAGVILFLFDPSETCGYSLEEQI--SLLEEIKELFKAPIVVVINKIDIADEEK 297 (346)
T ss_pred CcccCCChHH-hcHHHHHHHHHHHH-hcCeEEEEEcCccccCCCHHHHH--HHHHHHHHhcCCCeEEEEecccccchhH
Confidence 8853333333 222322 1111 11110 11 2333455555 55555555554 7999999999997553
No 36
>PRK04213 GTP-binding protein; Provisional
Probab=98.04 E-value=2.5e-05 Score=79.02 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcccC-hh-HHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD-FS-EIRREIQA 121 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d-~~-~i~~~i~~ 121 (767)
-..+.|++||..++||||++++|+|..+ +.+ ..++|+.+..+... . ..+.+.||..+.. .+ ...+.+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~------~-~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNHYDWG------D-FILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceEEeec------c-eEEEeCCccccccccCHHHHHHHHH
Confidence 3568999999999999999999999875 433 34667765543321 1 2356788854321 11 11222333
Q ss_pred HHhhhhc--CCc------cccCCCccc------c----cHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 122 QTDKEAG--GNK------VTPANSDLA------N----SDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 122 ~t~~~~g--~n~------V~~a~~D~a------n----s~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
....+.. .+. |+++..... + +....+.+.+...+...|.|+||.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIK 144 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccC
Confidence 2222221 111 444432111 0 1113334444445889999999999864
No 37
>PRK09866 hypothetical protein; Provisional
Probab=98.04 E-value=0.00076 Score=79.04 Aligned_cols=42 Identities=33% Similarity=0.566 Sum_probs=39.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQL 89 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l 89 (767)
|.++|||..++|||||+++|+|...+|.+..-+|.+|+.++.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~ 111 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRH 111 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEe
Confidence 999999999999999999999999999999999999997654
No 38
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.04 E-value=2.8e-05 Score=89.72 Aligned_cols=120 Identities=21% Similarity=0.192 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccc-cCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr-~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t 123 (767)
-.+|.|++||..++|||||+++|+|..+... ...++||-......... ... -.+.+.||... +...+...+...+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~--~~~-~~l~DT~G~~~-~~~~~~~~~~~~~ 111 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN--GRR-FTVVDTGGWEP-DAKGLQASVAEQA 111 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC--CcE-EEEEeCCCcCC-cchhHHHHHHHHH
Confidence 4679999999999999999999999864222 23356665433322111 011 23567888542 2333444444433
Q ss_pred hhhh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 124 DKEA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 124 ~~~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
..+. +.+. |+++...+...+ ..++..+...+...|.|+||+|+..
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATD-EAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCCc
Confidence 3322 2222 555554332222 3455555567899999999999864
No 39
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.01 E-value=3.2e-05 Score=72.73 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=62.6
Q ss_pred EEcCCCCchHHHHHHHhCCCCccc-cCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh-cC
Q 004228 52 VVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA-GG 129 (767)
Q Consensus 52 VvG~QSsGKSSvLEal~G~~flPr-~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~-g~ 129 (767)
|+|..+|||||++++|++..+... ....+|..+....+.... ..--.+++.||...... ...........+. ..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~g~~~~~~--~~~~~~~~~~~~~~~~ 76 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP--LGPVVLIDTPGIDEAGG--LGREREELARRVLERA 76 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC--CCcEEEEECCCCCcccc--chhhHHHHHHHHHHhC
Confidence 589999999999999999876522 334555555443332110 12235667787543221 1110011111111 11
Q ss_pred Cc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 130 NK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 130 n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
+. |+++......... .+.......+...|.|+||.|++...
T Consensus 77 d~il~v~~~~~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 77 DLILFVVDADLRADEEEE-KLLELLRERGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred CEEEEEEeCCCCCCHHHH-HHHHHHHhcCCeEEEEEEccccCChh
Confidence 21 4455544333332 23444445689999999999998644
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.98 E-value=3.1e-05 Score=87.91 Aligned_cols=119 Identities=20% Similarity=0.160 Sum_probs=74.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
.|++||+.++|||||++.|+|...-.+. ..++||........-. ..-..+++.||... +...+..++...+...+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~---~~~~~liDTpG~~~-~~~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG---GREFILIDTGGIEE-DDDGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC---CeEEEEEECCCCCC-cchhHHHHHHHHHHHHH
Confidence 4899999999999999999998643333 3467886654433211 11134568888532 22345555555544433
Q ss_pred cCCc----cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcc
Q 004228 128 GGNK----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 172 (767)
Q Consensus 128 g~n~----V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gt 172 (767)
.... |+++...+...+ ..+++.+...+...|.|+||+|+.+...
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~~~~piilVvNK~D~~~~~~ 124 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPED-EEIAKWLRKSGKPVILVANKIDGKKEDA 124 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHH-HHHHHHHHHhCCCEEEEEECccCCcccc
Confidence 3222 666665553333 4555555556899999999999986443
No 41
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.94 E-value=5.6e-05 Score=73.03 Aligned_cols=120 Identities=20% Similarity=0.338 Sum_probs=67.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccC-hh-HHHHH-HHHH
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD-FS-EIRRE-IQAQ 122 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d-~~-~i~~~-i~~~ 122 (767)
.++|+++|..++||||++++|+|..+.+.+. ..+|+......+... ...+ .+++.||..... .. .+... +...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKY-TLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeE-EEEECCCCccccchhccHHHHHHHHH
Confidence 5789999999999999999999987544332 345554433222221 1122 367788743110 00 01000 0000
Q ss_pred HhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 123 TDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 123 t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
...+.+.+- |++++.... ...+.+.+.+...+...|.|+||+|+++.
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 79 LKAIERADVVLLVIDATEGIT-EQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcc-hhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 011112222 455555443 33456666666668999999999999865
No 42
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.93 E-value=8.8e-05 Score=75.46 Aligned_cols=115 Identities=20% Similarity=0.177 Sum_probs=59.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC---C--CccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHH
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN---D--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~---g--~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~ 122 (767)
..|+|+|+.++|||||+++|+|..+...++ + -||+.....+. . ....-.+.+.||....... ....++ .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~l~l~DtpG~~~~~~~-~~~~l~-~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH---P-KFPNVTLWDLPGIGSTAFP-PDDYLE-E 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec---C-CCCCceEEeCCCCCcccCC-HHHHHH-H
Confidence 379999999999999999999976522222 1 12221111110 0 0012345567775432211 111111 1
Q ss_pred HhhhhcCCc-cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 123 TDKEAGGNK-VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 123 t~~~~g~n~-V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
. .+.+.+. ++-...++...+ ..+++.+...|.+.+.|+||+|+..+
T Consensus 76 ~-~~~~~d~~l~v~~~~~~~~d-~~~~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 76 M-KFSEYDFFIIISSTRFSSND-VKLAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred h-CccCcCEEEEEeCCCCCHHH-HHHHHHHHHhCCCEEEEEecccchhh
Confidence 1 1112222 111334554443 34455555568999999999999643
No 43
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.88 E-value=0.00011 Score=79.72 Aligned_cols=135 Identities=14% Similarity=0.174 Sum_probs=73.8
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCc
Q 004228 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (767)
Q Consensus 30 n~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~ 108 (767)
.+|.+++..+-. .+.....|+|||..++||||++|+|+|......+. ..+|..|....... ...--.+++.||-.
T Consensus 22 ~~l~~~l~~l~~-~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~---~G~~l~VIDTPGL~ 97 (313)
T TIGR00991 22 TKLLELLGKLKE-EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR---AGFTLNIIDTPGLI 97 (313)
T ss_pred HHHHHHHHhccc-ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE---CCeEEEEEECCCCC
Confidence 334444443332 35788999999999999999999999986422221 24555554332111 11224577889843
Q ss_pred ccChhHHHHHHHHHHhhhh-cCCc-----cccCC---CcccccHHHHHHHHhCc--CCCceEEEeeccCCCCC
Q 004228 109 FYDFSEIRREIQAQTDKEA-GGNK-----VTPAN---SDLANSDALQIAGIADP--DGYRTIGIITKLDIMDR 170 (767)
Q Consensus 109 ~~d~~~i~~~i~~~t~~~~-g~n~-----V~~a~---~D~ans~aL~la~~vDP--~G~RTIGVlTK~Dl~d~ 170 (767)
+...+.+++.+....+. +... |...+ .|-....+++.++++-. --.+||.|+|+.|..++
T Consensus 98 --d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 98 --EGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred --chHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 33333333222222221 1111 32211 22222445666666532 12689999999999864
No 44
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.86 E-value=6.1e-05 Score=73.34 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
|.|++||.+++||||++++|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999875
No 45
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.86 E-value=8.8e-05 Score=70.64 Aligned_cols=116 Identities=26% Similarity=0.301 Sum_probs=61.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHH-HHHHHhhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRRE-IQAQTDKE 126 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~-i~~~t~~~ 126 (767)
.|+++|+.++||||++++|+|..+...+. ..+|+.+....+... .....+.+.||.....- .+..+ +......+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~ 78 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG---GIPVRLIDTAGIRETED-EIEKIGIERAREAI 78 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC---CEEEEEEECCCcCCCcc-hHHHHHHHHHHHHH
Confidence 69999999999999999999997533332 344544332222111 12235677888532211 11111 11111111
Q ss_pred hcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 127 AGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 127 ~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
...+. |+++.......+ .++.+. ..+.+.|.|+||.|+++..
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~-~~~~~~--~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 79 EEADLVLFVIDASRGLDEED-LEILEL--PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred hhCCEEEEEEECCCCCCHHH-HHHHHh--hcCCCEEEEEEchhcCCcc
Confidence 11121 445553232222 344443 4579999999999998643
No 46
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.85 E-value=4.9e-05 Score=72.55 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=60.8
Q ss_pred EEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhh-hc
Q 004228 51 AVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE-AG 128 (767)
Q Consensus 51 vVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~-~g 128 (767)
|+||..++||||++++|+|........ ..+||.......... ..--.+++.||...... .+...+...+... .+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG---GREFILIDTGGIEPDDE-GISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC---CeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHh
Confidence 589999999999999999975322222 234543322111111 11134678888543221 2223232222221 12
Q ss_pred CCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 129 GNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 129 ~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
.+- |+++...+...+ ..+.+.+...+...|.|+||+|+.+..
T Consensus 77 ~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 77 ADVILFVVDGREGLTPAD-EEIAKYLRKSKKPVILVVNKVDNIKEE 121 (157)
T ss_pred CCEEEEEEeccccCCccH-HHHHHHHHhcCCCEEEEEECcccCChH
Confidence 222 444443332222 234444444579999999999997643
No 47
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.83 E-value=5.5e-05 Score=91.59 Aligned_cols=119 Identities=19% Similarity=0.203 Sum_probs=73.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~ 124 (767)
.+|.|++||++|+|||||+++|+|..+..+. ..++||..+....... ...-.+.+.||... +...+...+...+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~---~~~~~liDT~G~~~-~~~~~~~~~~~~~~ 349 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA---GTDFKLVDTGGWEA-DVEGIDSAIASQAQ 349 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC---CEEEEEEeCCCcCC-CCccHHHHHHHHHH
Confidence 5689999999999999999999998653333 2356776554332111 11124568888542 22223333433333
Q ss_pred hhh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 125 KEA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 125 ~~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+. +.+. |+++...+...+ ..+++.+...+...|.|+||.|+.+
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHhcCCCEEEEEECccccc
Confidence 322 2232 666665554333 2456666668999999999999864
No 48
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.82 E-value=9e-05 Score=84.37 Aligned_cols=118 Identities=22% Similarity=0.217 Sum_probs=68.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
+|.|++||..++|||||+++|+|...-.++ ...+||....-.+... ..--.+++.||....+ ..+...+...+..
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~---~~~~~liDT~G~~~~~-~~~~~~~~~~~~~ 76 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL---GREFILIDTGGIEPDD-DGFEKQIREQAEL 76 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC---CcEEEEEECCCCCCcc-hhHHHHHHHHHHH
Confidence 489999999999999999999998743233 3457776543332211 1113466888854311 1233333333332
Q ss_pred hh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.. +.+. |+++...+...+ ..+++.+...+...|.|+||+|+.+
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~-~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPAD-EEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCcEEEEEECccCcc
Confidence 22 2222 555554333222 2333333345899999999999764
No 49
>PRK15494 era GTPase Era; Provisional
Probab=97.82 E-value=0.00032 Score=77.71 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=65.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHH-hh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT-DK 125 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t-~~ 125 (767)
..|++||+.|+|||||+++|+|..+-.+.. ..+||....-.+. .. ..--.|.+.||... .+..+...+.... ..
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~-~~--~~qi~~~DTpG~~~-~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT-LK--DTQVILYDTPGIFE-PKGSLEKAMVRCAWSS 128 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE-eC--CeEEEEEECCCcCC-CcccHHHHHHHHHHHH
Confidence 389999999999999999999997643332 2456654321111 11 11235788998531 1222332222221 11
Q ss_pred hhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 126 EAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+.+.+. |+++...+.+.+ ..++..+...+...|.|+||.|+.+.
T Consensus 129 l~~aDvil~VvD~~~s~~~~~-~~il~~l~~~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDIT-HNILDKLRSLNIVPIFLLNKIDIESK 175 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHH-HHHHHHHHhcCCCEEEEEEhhcCccc
Confidence 222222 455444333322 23344444456788999999999754
No 50
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.75 E-value=7.6e-05 Score=72.69 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=60.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCc--ccChhHHHHHHHHHHhhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR--FYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~--~~d~~~i~~~i~~~t~~~ 126 (767)
.|++||..+|||||++++|+|....+......|+.|..-.+... ....-.|.+.||.. ......+....-.. +
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~---~ 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD--DGRSFVVADIPGLIEGASEGKGLGHRFLRH---I 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC--CCCeEEEEecCcccCcccccCCchHHHHHH---H
Confidence 48999999999999999999986422222344666543222111 11123467888842 11111122111111 1
Q ss_pred hcCCc---cccCCCc--c-cc-cHHHHHHHHhCc--CCCceEEEeeccCCCCCc
Q 004228 127 AGGNK---VTPANSD--L-AN-SDALQIAGIADP--DGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 127 ~g~n~---V~~a~~D--~-an-s~aL~la~~vDP--~G~RTIGVlTK~Dl~d~g 171 (767)
...+- |+++..- . .+ ....+..+...+ .+.+.|.|+||.|+.++.
T Consensus 77 ~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 130 (170)
T cd01898 77 ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE 130 (170)
T ss_pred HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch
Confidence 11121 3443321 1 00 011223334433 468899999999997644
No 51
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.75 E-value=8.7e-05 Score=72.10 Aligned_cols=111 Identities=12% Similarity=0.076 Sum_probs=59.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
.+|+|||+.+|||||++++|++..|.+....+++.......+... .....-.+.+.||... +..+. ..+.
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~--~~~~~-------~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQID-GKTIKAQIWDTAGQER--YRAIT-------SAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCChHH--HHHHH-------HHHH
Confidence 589999999999999999999998755544444432222222111 1111223445665321 11111 1111
Q ss_pred cCCc----cccCCCccccc----HHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 128 GGNK----VTPANSDLANS----DALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 128 g~n~----V~~a~~D~ans----~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.... |.++. |...- ..+..+++..+.+...+.|.||.|+.+
T Consensus 74 ~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 74 RGAVGALLVYDIT-KKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred CCCCEEEEEEECc-CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 1111 22332 11111 123445555566788999999999875
No 52
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.74 E-value=9.8e-05 Score=69.94 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
.+|+|||.++|||||+++.|.+..+.+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~ 28 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN 28 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc
Confidence 3699999999999999999999987444
No 53
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.74 E-value=0.00012 Score=70.56 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=59.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhhc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~g 128 (767)
.|++||+.+|||||+|++|.|.++.+....+.|+......+... ...-+-.+.+.||... +.. .+ ..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~D~~G~~~--~~~---~~----~~~~~ 71 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-DKTVRLQLWDTAGQER--FRS---LI----PSYIR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-CEEEEEEEEECCCcHH--HHH---HH----HHHhc
Confidence 58999999999999999999998866545555554433222111 1112234557777321 111 11 11121
Q ss_pred -CCc---cccCCCc--cccc-HHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 129 -GNK---VTPANSD--LANS-DALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 129 -~n~---V~~a~~D--~ans-~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+. |.+++.. +.+. ..+...+..-+.+...|.|+||.|+.+
T Consensus 72 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 72 DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 111 3332211 1111 112223322233689999999999964
No 54
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.73 E-value=0.0001 Score=70.97 Aligned_cols=109 Identities=23% Similarity=0.349 Sum_probs=55.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC--Ccccc-CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD--FLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~--flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
-|+|+|++++||||++++|+|.. .++.. ...+|.-+....+... . ..--.+.+.||.. +| .. .....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~-~~~~~~~DtpG~~--~~---~~---~~~~~ 71 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-S-GKRLGFIDVPGHE--KF---IK---NMLAG 71 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-C-CcEEEEEECCChH--HH---HH---HHHhh
Confidence 38999999999999999999853 22211 1223332211111100 0 1122456777741 11 11 11111
Q ss_pred hhcCCc---cccCCCccccc--HHHHHHHHhCcCCC-ceEEEeeccCCCCC
Q 004228 126 EAGGNK---VTPANSDLANS--DALQIAGIADPDGY-RTIGIITKLDIMDR 170 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~ans--~aL~la~~vDP~G~-RTIGVlTK~Dl~d~ 170 (767)
+.+.+. |+++..++..+ +.+.+++.. |. ..|.|+||.|+.+.
T Consensus 72 ~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 72 AGGIDLVLLVVAADEGIMPQTREHLEILELL---GIKRGLVVLTKADLVDE 119 (164)
T ss_pred hhcCCEEEEEEECCCCccHhHHHHHHHHHHh---CCCcEEEEEECccccCH
Confidence 223333 55665544222 223344333 44 89999999999753
No 55
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.70 E-value=0.00011 Score=82.74 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=43.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC--CCccCcceeehhcccCCcccccccccCCCCc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~--g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~ 108 (767)
-+..|++||.+||||||||++|++.+ |..+ -.+||.|..-.+.... ..--.|.++||..
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~--~~~i~~vDtPGi~ 218 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDD--ERSFVVADIPGLI 218 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCC--CcEEEEEeCCCcc
Confidence 45689999999999999999999986 4443 3689999876554321 1113577899864
No 56
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.69 E-value=4.7e-05 Score=80.36 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=72.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCC-cccccccccCCCCcccChh-HHHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT-DEEYGEFLHLPGKRFYDFS-EIRREIQAQT 123 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~-~~~~~~f~~~pg~~~~d~~-~i~~~i~~~t 123 (767)
..|++++.|..|+||||||+.++..+- -+.++-. -|-.+|..+... ...| ..+++||+++.... +..+.+.+.|
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~k~--K~g~Tq~in~f~v~~~~-~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKN-IADTSKS--KNGKTQAINHFHVGKSW-YEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhh-hhhhcCC--CCccceeeeeeeccceE-EEEecCCcccccCCccCcchHhHhH
Confidence 347999999999999999999998853 3333211 222333444333 2344 34689997664332 3445555555
Q ss_pred hhhhcC--Cc-----cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 124 DKEAGG--NK-----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 124 ~~~~g~--n~-----V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
..|.-+ |. .+.+...+.+.| +..|..+-..+-....|+||+|.+..+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D-~~~i~~~ge~~VP~t~vfTK~DK~k~~ 264 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTD-NPEIAWLGENNVPMTSVFTKCDKQKKV 264 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCC-hHHHHHHhhcCCCeEEeeehhhhhhhc
Confidence 444321 22 223333333333 255556666799999999999998543
No 57
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.69 E-value=0.0001 Score=71.47 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=53.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh-hh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK-EA 127 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~-~~ 127 (767)
+|.+||..+||||||+.+|.|...-.+.+ ....-+..+++.||+-+....--+.-|.-..+. ..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KT---------------q~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKT---------------QAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCcc---------------ceeEecccEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 69999999999999999999976422221 111223456777876443321112212221111 00
Q ss_pred cCCccccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 128 GGNKVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 128 g~n~V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
. -|.+|+... +.-.-.+++-+ ..+.|||+||.|+..
T Consensus 68 ~--ll~dat~~~-~~~pP~fa~~f---~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 68 L--LLQDATEPR-SVFPPGFASMF---NKPVIGVITKIDLPS 103 (143)
T ss_pred E--EEecCCCCC-ccCCchhhccc---CCCEEEEEECccCcc
Confidence 0 022333221 11111334444 478999999999983
No 58
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.67 E-value=0.00014 Score=71.35 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
+..|+|||++++||||+|+.+++..|-+....+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t 36 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT 36 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc
Confidence 358999999999999999999999875554433
No 59
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.64 E-value=0.00022 Score=69.77 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
+.+|+|||+.++||||+++++++.+|-+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~ 30 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP 30 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc
Confidence 4689999999999999999999998744
No 60
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.64 E-value=0.00019 Score=68.17 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|++||++++|||||+++|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 699999999999999999999865
No 61
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.62 E-value=0.00043 Score=67.95 Aligned_cols=100 Identities=22% Similarity=0.286 Sum_probs=53.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhhc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~g 128 (767)
+|++||..++|||||+++|.|..-+++..+ .+.+.. ...++.||..+.... ...++. ..+.+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~~~~~-------~v~~~~-------~~~iDtpG~~~~~~~-~~~~~~---~~~~~ 64 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLARKTQ-------AVEFND-------KGDIDTPGEYFSHPR-WYHALI---TTLQD 64 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccCccce-------EEEECC-------CCcccCCccccCCHH-HHHHHH---HHHhc
Confidence 799999999999999999999742221111 111100 124788996543322 222211 11222
Q ss_pred CCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 129 GNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 129 ~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+. |++++....... ..+.. +. .+...|+|+||+|+.+
T Consensus 65 ad~il~v~d~~~~~s~~~-~~~~~-~~-~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 65 VDMLIYVHGANDPESRLP-AGLLD-IG-VSKRQIAVISKTDMPD 105 (158)
T ss_pred CCEEEEEEeCCCcccccC-HHHHh-cc-CCCCeEEEEEccccCc
Confidence 232 445543321111 12222 22 3567999999999854
No 62
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.59 E-value=0.00031 Score=66.63 Aligned_cols=25 Identities=32% Similarity=0.702 Sum_probs=23.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
+|++||.++||||||+++|+|..|.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~ 25 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFS 25 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCC
Confidence 5899999999999999999999874
No 63
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.58 E-value=7.1e-05 Score=77.23 Aligned_cols=120 Identities=22% Similarity=0.260 Sum_probs=66.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC--CCccCcceeehhcccCCcccccccccCCCCcccCh--hHHHHHHHHHHh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDF--SEIRREIQAQTD 124 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~--g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~--~~i~~~i~~~t~ 124 (767)
+|+|||..+|||||++|+|.|.+.++.+. ..||+..-...-.. ....-.+++.||..-.+. +++.++|.....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~---~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV---DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE---TTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee---cceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 69999999999999999999998777763 35666443222111 112234678888532222 345555554322
Q ss_pred -hhhcCCc---cccCCCcccc--cHHHHHHHHhCcC--CCceEEEeeccCCCCCcc
Q 004228 125 -KEAGGNK---VTPANSDLAN--SDALQIAGIADPD--GYRTIGIITKLDIMDRGT 172 (767)
Q Consensus 125 -~~~g~n~---V~~a~~D~an--s~aL~la~~vDP~--G~RTIGVlTK~Dl~d~gt 172 (767)
...|-+. |++.. .+.+ ..+++..+++-+. -.+||.|+|..|-.....
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 1122222 66766 6653 3446555554322 368999999999886554
No 64
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.58 E-value=0.00018 Score=70.94 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|+|+|..+|||||+|++|++..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~ 25 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGD 25 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCC
Confidence 3899999999999999999999754
No 65
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.54 E-value=0.00026 Score=72.17 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=22.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|+|||++++||||+++.+++-.|
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f 25 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF 25 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Confidence 689999999999999999999887
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.50 E-value=0.00038 Score=70.04 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=23.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|+|||+++|||||++..+++..|.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~ 26 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFL 26 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999998873
No 67
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.50 E-value=0.00051 Score=66.30 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~ 77 (767)
.|+|||++++||||+|++|++..|.+...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~ 30 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLA 30 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccC
Confidence 58999999999999999999998754433
No 68
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.50 E-value=0.00021 Score=68.53 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=58.5
Q ss_pred EEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCc-ccChhHHHHHHHHHHhhhh--c
Q 004228 52 VVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDFSEIRREIQAQTDKEA--G 128 (767)
Q Consensus 52 VvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~d~~~i~~~i~~~t~~~~--g 128 (767)
+||..++||||++++|+|..+.+-....+|+-+-.-.+... ... ..+++.||.. +...+ ....+... .+. +
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~-~~liDtpG~~~~~~~~-~~~~~~~~--~~~~~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKE-IEIVDLPGTYSLSPYS-EDEKVARD--FLLGEK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeE-EEEEECCCccccCCCC-hhHHHHHH--HhcCCC
Confidence 58999999999999999997533223455654432222111 112 3567888853 22221 11111111 111 1
Q ss_pred CCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 129 GNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 129 ~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+- |+++.. ..+ ...+..++...+...|.|+||+|+.+
T Consensus 75 ~d~vi~v~d~~~-~~~--~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 75 PDLIVNVVDATN-LER--NLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred CcEEEEEeeCCc-chh--HHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 121 444432 211 12444444456889999999999975
No 69
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.50 E-value=0.00036 Score=77.15 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC--CCccCcceeehhcccCCcccccccccCCCCccc--ChhHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY--DFSEIRREIQA 121 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~--g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~--d~~~i~~~i~~ 121 (767)
-++.|++||.+||||||||++|++.+ |..+ ..+|+.|..-.+... . .....+.++||.... ....+....-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~-~-~~~~~i~D~PGli~ga~~~~gLg~~flr 232 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVD-D-YKSFVIADIPGLIEGASEGAGLGHRFLK 232 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeC-C-CcEEEEEeCCCccCCCCccccHHHHHHH
Confidence 57899999999999999999999875 4433 357898876544321 1 111245688875321 11123322211
Q ss_pred HHhhhhcCCc---cccCCC-c-ccccH-HHHHHHHhCc--CCCceEEEeeccCCCC
Q 004228 122 QTDKEAGGNK---VTPANS-D-LANSD-ALQIAGIADP--DGYRTIGIITKLDIMD 169 (767)
Q Consensus 122 ~t~~~~g~n~---V~~a~~-D-~ans~-aL~la~~vDP--~G~RTIGVlTK~Dl~d 169 (767)
..++ ... |+++.. | +.+-. .....+.+++ .....|.|+||+|+.+
T Consensus 233 hie~---a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 233 HIER---TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred Hhhh---cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 1111 111 555442 2 11111 1233445555 3678999999999875
No 70
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.48 E-value=0.00033 Score=77.24 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC--CCccCcceeehhcccCCcccccccccCCCCcc--cChhHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF--YDFSEIRREIQA 121 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~--g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~--~d~~~i~~~i~~ 121 (767)
-++.|++||.+||||||||++|++.. |+.+ ..+|+.|..-.+... ....-.+.++||... .....+....-.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~--~~~~~~i~D~PGli~~a~~~~gLg~~flr 231 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVD--DGRSFVIADIPGLIEGASEGAGLGHRFLK 231 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeC--CceEEEEEeCCCcccCCcccccHHHHHHH
Confidence 56899999999999999999999875 3332 357888876544321 112234668888532 111123322222
Q ss_pred HHhhhhcCCc---cccCCCc-cccc-HH----HHHHHHhCc--CCCceEEEeeccCCCCC
Q 004228 122 QTDKEAGGNK---VTPANSD-LANS-DA----LQIAGIADP--DGYRTIGIITKLDIMDR 170 (767)
Q Consensus 122 ~t~~~~g~n~---V~~a~~D-~ans-~a----L~la~~vDP--~G~RTIGVlTK~Dl~d~ 170 (767)
..++ ... |+++... ..++ +. .+....+++ .....|.|+||+|+.+.
T Consensus 232 hier---ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 232 HIER---TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHh---hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 1111 111 4444321 1111 11 122334443 46789999999999753
No 71
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.48 E-value=0.00043 Score=67.39 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
.++.|+|||.+++||||+++++++..+.+.
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~ 35 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG 35 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC
Confidence 458999999999999999999997766443
No 72
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.47 E-value=0.00037 Score=68.05 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
-.|+|||++++||||+++.+++..|.+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~ 29 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA 29 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3799999999999999999999987443
No 73
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.46 E-value=0.00041 Score=65.07 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=59.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCC-CccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g-~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~ 126 (767)
+.|+++|..+|||||++++|++.. .|.... +.|+-.....+... ....--.+.+.||. .++..+..........+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~--~~~~~~~~~~~~~~~~~ 77 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEED-GKTYKFNLLDTAGQ--EDYRAIRRLYYRAVESS 77 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEEC-CEEEEEEEEECCCc--ccchHHHHHHHhhhhEE
Confidence 579999999999999999999998 455543 44443332212111 10011245677873 23333322211111111
Q ss_pred hc-CC---ccccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 127 AG-GN---KVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 127 ~g-~n---~V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+- .+ .|.+++... +..-..+.+... .+...+.|+||.|+.+.
T Consensus 78 i~~~d~~~~v~~~~~~~-~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 78 LRVFDIVILVLDVEEIL-EKQTKEIIHHAE-SNVPIILVGNKIDLRDA 123 (161)
T ss_pred EEEEEEeeeehhhhhHh-HHHHHHHHHhcc-cCCcEEEEEEcccCCcc
Confidence 10 01 022222211 011112223332 27889999999999763
No 74
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.45 E-value=0.00049 Score=74.04 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=65.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCc-----cCcceeehhcccC---Ccc-cccccccCCCCccc-C----hhH
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC-----TRRPLVLQLLQTK---TDE-EYGEFLHLPGKRFY-D----FSE 114 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~-----TR~Pl~l~l~~~~---~~~-~~~~f~~~pg~~~~-d----~~~ 114 (767)
.|+|||..++||||++++|.+..+.+...... ....+.+...... ... ---.+++.||.... + +..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~ 85 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKP 85 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHH
Confidence 69999999999999999999998765532111 0111111111100 000 11245677874321 1 122
Q ss_pred HHHHHHHHHhhhh------------cCCc-------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 115 IRREIQAQTDKEA------------GGNK-------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 115 i~~~i~~~t~~~~------------g~n~-------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
|.+.|...-+.++ ..+. +.+....+.+.| +++++.+.. +...|.|+||+|++.+.
T Consensus 86 i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D-~~~lk~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 86 IVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD-IEFMKRLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH-HHHHHHHhc-cCCEEEEEECCCcCCHH
Confidence 3333332211111 1111 223334555554 677777764 78999999999998643
No 75
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.45 E-value=0.00062 Score=80.00 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=71.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhH-HHHHHHHHHhhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE-IRREIQAQTDKE 126 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~-i~~~i~~~t~~~ 126 (767)
.|+|||..++||||++|+|+|...+..+. ..+|....++..... ..-..+++.||...+..++ ..++|......+
T Consensus 120 rIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id---G~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ---GVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC---CceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 79999999999999999999997655543 244544433321111 1223578899865443222 222333333222
Q ss_pred hc---CCc---cccC---CCcccccHHHHHHHHhCcCC--CceEEEeeccCCCCC
Q 004228 127 AG---GNK---VTPA---NSDLANSDALQIAGIADPDG--YRTIGIITKLDIMDR 170 (767)
Q Consensus 127 ~g---~n~---V~~a---~~D~ans~aL~la~~vDP~G--~RTIGVlTK~Dl~d~ 170 (767)
+. ... |... ..|..+..+++.++++-..+ .+||.|+|..|.+++
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 22 221 3222 34444556777776665333 789999999999964
No 76
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.45 E-value=0.0006 Score=65.33 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
.|+|||.+++||||+++++.+..+.+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~ 27 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE 27 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 58999999999999999999988744
No 77
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.44 E-value=0.00044 Score=78.61 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=64.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC--CCccCcceeehhcccCCcccccccccCCCCccc--ChhHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY--DFSEIRREIQA 121 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~--g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~--d~~~i~~~i~~ 121 (767)
-++.|++||.+||||||||++|++.+ |+-+ ..+|+.|..-.+... . .....+.++||.... ....+....-.
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~-~-~~~~~laD~PGliega~~~~gLg~~fLr 232 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETD-D-GRSFVMADIPGLIEGASEGVGLGHQFLR 232 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEe-C-CceEEEEECCCCcccccccchHHHHHHH
Confidence 46699999999999999999999985 5533 357888864332211 0 122346788886431 11122222111
Q ss_pred HHhhhhcCCc---cccCCC----cccc--cHHHHHHHHhCc--CCCceEEEeeccCCC
Q 004228 122 QTDKEAGGNK---VTPANS----DLAN--SDALQIAGIADP--DGYRTIGIITKLDIM 168 (767)
Q Consensus 122 ~t~~~~g~n~---V~~a~~----D~an--s~aL~la~~vDP--~G~RTIGVlTK~Dl~ 168 (767)
..++ .+- |++++. |... ....+..+.+++ .+...|.|+||+|+.
T Consensus 233 hier---~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 233 HIER---TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHhh---CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 1111 111 444431 2111 112233445555 478999999999973
No 78
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.42 E-value=0.00035 Score=82.56 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCc------ceeehhcccCC---cccc------cccccCCCCcc
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRR------PLVLQLLQTKT---DEEY------GEFLHLPGKRF 109 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~------Pl~l~l~~~~~---~~~~------~~f~~~pg~~~ 109 (767)
+.-|-|+|+|+.++||||||++|+|..+.....|..|+- |+......... ...+ -.|++.||.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~-- 79 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH-- 79 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc--
Confidence 456999999999999999999999998765555767762 22111100000 0000 236677873
Q ss_pred cChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 110 YDFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 110 ~d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+|..++..- +.+.+- |++++..+..++ +..+..+...+...|.|+||+|+.+
T Consensus 80 e~f~~l~~~~------~~~aD~~IlVvD~~~g~~~qt-~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 80 EAFTNLRKRG------GALADLAILIVDINEGFKPQT-QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HhHHHHHHHH------HhhCCEEEEEEECCcCCCHhH-HHHHHHHHHcCCCEEEEEECCCccc
Confidence 3344433211 111222 566665443322 3333333445789999999999974
No 79
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.40 E-value=0.00067 Score=65.44 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
.|+|||+.++||||+++++++..|.+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~ 28 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSK 28 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC
Confidence 699999999999999999999987543
No 80
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.40 E-value=0.00047 Score=67.09 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=26.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
.|+|||..+|||||+|++|++..+.+....+++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~ 34 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 34 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccc
Confidence 699999999999999999999877544433333
No 81
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.37 E-value=0.00061 Score=65.67 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=23.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|+|+|+.+|||||+|+++.+..+-
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~ 26 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999999763
No 82
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.37 E-value=0.00079 Score=65.53 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
..|+|||++++||||+++.+++..|.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~ 29 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE 29 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 579999999999999999999987733
No 83
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.37 E-value=0.0016 Score=69.20 Aligned_cols=200 Identities=17% Similarity=0.147 Sum_probs=104.4
Q ss_pred CCCeEE-EEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcc---cChhHHHHHHH
Q 004228 46 ELPQVA-VVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF---YDFSEIRREIQ 120 (767)
Q Consensus 46 ~LPqIv-VvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~---~d~~~i~~~i~ 120 (767)
.-|-++ ++|..++||||++|||.+-.--|+. -|.||+-++....... .+.-.+.+.||..- .|- +.++.+.
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~---~~~l~lwDtPG~gdg~~~D~-~~r~~~~ 112 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD---GENLVLWDTPGLGDGKDKDA-EHRQLYR 112 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc---ccceEEecCCCcccchhhhH-HHHHHHH
Confidence 467666 9999999999999999964444665 4788886655444332 23444557887643 221 1222111
Q ss_pred HHHhhhhcCCc----cccCC-CcccccHHHHHHHHhCcC--CCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEE
Q 004228 121 AQTDKEAGGNK----VTPAN-SDLANSDALQIAGIADPD--GYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVV 193 (767)
Q Consensus 121 ~~t~~~~g~n~----V~~a~-~D~ans~aL~la~~vDP~--G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~ 193 (767)
. ++..-+ ++++. .|+.+.. ++++.+=-. +.|+|.|+|-.|...+|.+|. ...
T Consensus 113 d----~l~~~DLvL~l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~---------------~~~ 171 (296)
T COG3596 113 D----YLPKLDLVLWLIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWD---------------SAG 171 (296)
T ss_pred H----HhhhccEEEEeccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccc---------------ccc
Confidence 1 111111 12332 2333322 444333211 289999999999998874432 111
Q ss_pred eCChhhhhcccCHHHHHHHHHHhhc-cCCCCCCc-ccccChhHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHHH
Q 004228 194 NRSQEDIMFNRSIKDALVAEEKFFR-SRPVYNGL-ADRCGVPQLAKKLNQILVQHIKAI-LPGLKSRISSALVSVAKEHA 270 (767)
Q Consensus 194 nrsq~di~~~~s~~ea~~~E~~FF~-~~~~~~~l-~~~~Gi~~L~~~Ls~iL~~hI~~~-LP~l~~~I~~~L~~~~~eL~ 270 (767)
+.-...+... +++....=.+||. .||.|..= ..-+|...|...|-+.|-.+-+.- .+.+.+..+......+....
T Consensus 172 ~~p~~a~~qf--i~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~~d~~~~~~~~~q~~~~ 249 (296)
T COG3596 172 HQPSPAIKQF--IEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARLQDELRTQSARTQARTQ 249 (296)
T ss_pred CCCCHHHHHH--HHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 2111111111 2221122234554 36766543 224899988888877776554433 23444444444444444333
Q ss_pred Hc
Q 004228 271 SY 272 (767)
Q Consensus 271 ~l 272 (767)
-+
T Consensus 250 ~~ 251 (296)
T COG3596 250 FL 251 (296)
T ss_pred hh
Confidence 33
No 84
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.35 E-value=0.00022 Score=79.37 Aligned_cols=131 Identities=22% Similarity=0.274 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCC-----ccccCCCccCcceeehhcccCCcccc
Q 004228 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF-----LPRGNDICTRRPLVLQLLQTKTDEEY 98 (767)
Q Consensus 24 ~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~f-----lPr~~g~~TR~Pl~l~l~~~~~~~~~ 98 (767)
++-.+++++++.+..+.. ..| .|+|+|+.++||||+||||-|+.- -|+|.--+|..|..-.--+.+ -
T Consensus 16 ~~~~~~s~i~~~l~~~~~---~~l-~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p----n 87 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDN---APL-NIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP----N 87 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH-----E-EEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T----T
T ss_pred CHHHHHHHHHHHHHHhhc---Cce-EEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC----C
Confidence 345567788887776642 223 899999999999999999998741 122211133333322211111 1
Q ss_pred cccccCCCCcccChhHHHHHHHHHHhhhhcCCc--cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCC
Q 004228 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNK--VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 167 (767)
Q Consensus 99 ~~f~~~pg~~~~d~~~i~~~i~~~t~~~~g~n~--V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl 167 (767)
-.|-++||.+-.+|.. ..-++. .. ...-+. ++.+ .-+...+ ..+|+++-.-|++...|.||.|.
T Consensus 88 v~lWDlPG~gt~~f~~-~~Yl~~-~~-~~~yD~fiii~s-~rf~~nd-v~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 88 VTLWDLPGIGTPNFPP-EEYLKE-VK-FYRYDFFIIISS-ERFTEND-VQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp EEEEEE--GGGSS--H-HHHHHH-TT-GGG-SEEEEEES-SS--HHH-HHHHHHHHHTT-EEEEEE--HHH
T ss_pred CeEEeCCCCCCCCCCH-HHHHHH-cc-ccccCEEEEEeC-CCCchhh-HHHHHHHHHcCCcEEEEEecccc
Confidence 2233678766555531 111111 00 000011 2222 2232223 48889998899999999999985
No 85
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.34 E-value=0.00094 Score=65.02 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
+..|+|||+.++||||+++++.+-.|.+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~ 30 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE 30 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc
Confidence 4689999999999999999999877643
No 86
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.34 E-value=0.00052 Score=69.24 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=57.4
Q ss_pred eEEEEcCCCCchHHHHHHHhC--CCCccccC---------------CCccCcceeehhcccCCcccccccccCCCCcccC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG--RDFLPRGN---------------DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD 111 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G--~~flPr~~---------------g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d 111 (767)
.|++||+.++|||||+++|++ -.| .... ..+|.....+.+... ...-.+.+.||. .+
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~---~~~~~l~DtpG~--~~ 77 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTF-RENEEVEERVMDSNDLERERGITILAKNTAVTYK---DTKINIVDTPGH--AD 77 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCC-CccCcccccccccchhHHhcccccccceeEEEEC---CEEEEEEECCCc--HH
Confidence 699999999999999999996 223 2221 111111111111110 111235677773 23
Q ss_pred hhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 112 FSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 112 ~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
|....... +.+.+. |+++..+...+. ..+.+.+...+.+.|.|+||.|+.+.
T Consensus 78 ~~~~~~~~------~~~~d~~ilV~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 FGGEVERV------LSMVDGVLLLVDASEGPMPQT-RFVLKKALELGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHHHH------HHhcCEEEEEEECCCCccHHH-HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 33221111 112222 556654432222 23344444568899999999999753
No 87
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.33 E-value=0.00075 Score=65.18 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
+|+|||+.++||||++++|.+..|.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~ 28 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE 28 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 69999999999999999999998755
No 88
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.32 E-value=0.00061 Score=65.73 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
.|+|||+.++||||+++++++..|.+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~ 27 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK 27 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 58999999999999999999987643
No 89
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.31 E-value=0.00094 Score=64.56 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.|+|||+.++||||+++.|.+..|.+....+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~ 32 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHT 32 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc
Confidence 5899999999999999999998875554433
No 90
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.30 E-value=0.0031 Score=60.74 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|+++|..++||||++++|++..|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~ 24 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL 24 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc
Confidence 589999999999999999999976
No 91
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.30 E-value=0.00064 Score=68.16 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=23.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|+|||+.++||||||+++++..|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~ 26 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL 26 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC
Confidence 6999999999999999999998774
No 92
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.30 E-value=0.00078 Score=82.02 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=66.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCc-ccCh---hHHHHHHHHH
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDF---SEIRREIQAQ 122 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~d~---~~i~~~i~~~ 122 (767)
..|++||..|+||||++|+|+|... .+++ .++|+-+.+-.+... ..--.++|+||.. +... ..+.+.+...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~---~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTT---DHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcC---ceEEEEEECCCccccccccccccHHHHHHHH
Confidence 5799999999999999999999975 3443 345554433333221 1223578999842 2111 0122222211
Q ss_pred HhhhhcCCc-----cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 123 TDKEAGGNK-----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 123 t~~~~g~n~-----V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
.+..... |++++. +. ..+.+..++...|.++|.|+||.|+.++
T Consensus 80 --~l~~~~aD~vI~VvDat~-le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 80 --YILSGDADLLINVVDASN-LE--RNLYLTLQLLELGIPCIVALNMLDIAEK 127 (772)
T ss_pred --HHhccCCCEEEEEecCCc-ch--hhHHHHHHHHHcCCCEEEEEEchhhhhc
Confidence 1111111 555543 21 2244556666679999999999999753
No 93
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.30 E-value=0.00062 Score=78.69 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=40.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC--CCccCcceeehhcccCCcccccccccCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~--g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~ 107 (767)
.+..|++||..||||||||++|++.+ |.-+ -..|+.|..-.+... +.--.+.+.||.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~---~~~f~laDtPGl 216 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAG---DTRFTVADVPGL 216 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEEC---CeEEEEEECCCC
Confidence 67899999999999999999999985 4433 357888865443321 112346688885
No 94
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.28 E-value=0.0012 Score=66.13 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=23.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
+|++||+++|||||+++++++..|.
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~ 29 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFV 29 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC
Confidence 6999999999999999999998764
No 95
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.27 E-value=0.0013 Score=63.26 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=22.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|+|||+.+|||||++..|++..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~ 24 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA 24 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC
Confidence 689999999999999999999753
No 96
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.22 E-value=0.00052 Score=66.06 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=23.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|++||..+|||||+++++++..|.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~ 26 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc
Confidence 6899999999999999999998763
No 97
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.21 E-value=0.0006 Score=71.15 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=29.7
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
|+++..++..++ .+++..+...|...|.|+||+|++++.
T Consensus 116 Vvda~~g~~~~d-~~~l~~l~~~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 116 VVAANAGIIGMT-KEHLGLALALNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred EEECCCCCcHHH-HHHHHHHHHcCCCEEEEEECccccCHH
Confidence 677777775444 566677777889999999999998643
No 98
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.21 E-value=0.0012 Score=63.64 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|+|||+.++||||+++++++..|.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~~ 28 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYFV 28 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC
Confidence 6999999999999999999998763
No 99
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.21 E-value=0.00056 Score=66.73 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=32.9
Q ss_pred EEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCC
Q 004228 52 VVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (767)
Q Consensus 52 VvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~ 107 (767)
++|.++|||||+|++|+|..+ ..+. ..+|+.|..-.+... . ...-.+.+.||.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~-~-~~~~~i~DtpG~ 54 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVP-D-GARIQVADIPGL 54 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcC-C-CCeEEEEecccc
Confidence 589999999999999999975 3332 345666543222111 0 112256778874
No 100
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.20 E-value=0.0007 Score=66.17 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccc
Q 004228 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFL 102 (767)
Q Consensus 24 ~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~ 102 (767)
.+-.+++.|.+.++. . ..-.=..|+|||.+|+|||||||+|.|...++.+. ..+||....+.+. ....++
T Consensus 82 ~~~~L~~~l~~~~~~--~-~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~------~~~~li 152 (157)
T cd01858 82 GKGSLIQLLRQFSKL--H-SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLM------KRIYLI 152 (157)
T ss_pred cHHHHHHHHHHHHhh--h-ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcC------CCEEEE
Confidence 344556666554431 1 11111368899999999999999999987766654 3467765444331 123456
Q ss_pred cCCC
Q 004228 103 HLPG 106 (767)
Q Consensus 103 ~~pg 106 (767)
+.||
T Consensus 153 DtPG 156 (157)
T cd01858 153 DCPG 156 (157)
T ss_pred ECcC
Confidence 6776
No 101
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.20 E-value=0.00099 Score=63.70 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|+|+.+|||||++++|++..|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~ 24 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF 24 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC
Confidence 489999999999999999998874
No 102
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.18 E-value=0.0018 Score=63.19 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=25.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~ 77 (767)
-+|+|||+.++||||+|+.+.+..|.+...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~ 32 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP 32 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC
Confidence 369999999999999999999998755443
No 103
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.16 E-value=0.0012 Score=63.83 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=23.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
+|+|+|+.+|||||+++++++..|.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~ 26 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC
Confidence 6999999999999999999998764
No 104
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.15 E-value=0.00068 Score=66.04 Aligned_cols=109 Identities=15% Similarity=0.221 Sum_probs=55.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC-CccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g-~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
.|+|||+.++|||||++++.+..|...-.. +.+++...+.+.. ..-.-.+.+.||............+ .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~-------~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDG---EQVSLEILDTAGQQQADTEQLERSI-------R 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECC---EEEEEEEEECCCCcccccchHHHHH-------H
Confidence 489999999999999999988776432222 1122222221111 1112345677876532222222221 1
Q ss_pred cCCccccCCCcccccHHHH-------HHHHhC--cCCCceEEEeeccCCC
Q 004228 128 GGNKVTPANSDLANSDALQ-------IAGIAD--PDGYRTIGIITKLDIM 168 (767)
Q Consensus 128 g~n~V~~a~~D~ans~aL~-------la~~vD--P~G~RTIGVlTK~Dl~ 168 (767)
+.+.++ ---|+.+...++ .+.... ..+...|.|.||.|+.
T Consensus 71 ~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 71 WADGFV-LVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred hCCEEE-EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 122211 112344443332 233322 2367889999999975
No 105
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.14 E-value=0.0011 Score=61.13 Aligned_cols=111 Identities=18% Similarity=0.179 Sum_probs=55.3
Q ss_pred EEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccC-CcccccccccCCCCcccChhHHHHHHHHHHhhhhcCC
Q 004228 52 VVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK-TDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGN 130 (767)
Q Consensus 52 VvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~-~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~g~n 130 (767)
|||..++||||++++|++....+ .....|. +-........ ....-..+.+.||..... ... .......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~~~------~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR--SLR------RLYYRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccch-hheeeEEEEECCEEEEEEEEecCChHHHH--hHH------HHHhcCCC
Confidence 68999999999999999986422 2222333 1111111110 001112344556532211 100 11111111
Q ss_pred c---cccCCCcccccHHH----HHHHHhCcCCCceEEEeeccCCCCCcc
Q 004228 131 K---VTPANSDLANSDAL----QIAGIADPDGYRTIGIITKLDIMDRGT 172 (767)
Q Consensus 131 ~---V~~a~~D~ans~aL----~la~~vDP~G~RTIGVlTK~Dl~d~gt 172 (767)
. |++++.+....+.. .........+...|.|+||.|+.+...
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~ 119 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV 119 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc
Confidence 1 44454433323222 233445566899999999999986543
No 106
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.13 E-value=0.0018 Score=63.95 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
...|+|||+.++|||||+..+++-.|.+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~ 32 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPK 32 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcc
Confidence 35899999999999999999999887544
No 107
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.12 E-value=0.0014 Score=63.20 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.+|+|||+.+|||||+++.+++-.|.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~ 27 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV 27 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 47999999999999999999987763
No 108
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.10 E-value=0.0017 Score=62.47 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=22.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|+|+|..++||||++++++|..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~ 24 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV 24 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999974
No 109
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.08 E-value=0.0017 Score=62.19 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
..|+|||+.++||||+++++++..|..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~ 28 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD 28 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC
Confidence 479999999999999999999987743
No 110
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.02 E-value=0.0022 Score=65.50 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=58.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-----------------CCccCcceeehhcccCCcccccccccCCCCcccC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-----------------DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD 111 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-----------------g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d 111 (767)
.|++||..++|||||+++|++... ..|. ...|+.+..+.+.. ...--.|++.||.. +
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~-~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~---~~~~i~~iDtPG~~--~ 77 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLA-KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET---ANRHYAHVDCPGHA--D 77 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hcccccccccccccCChhhhhcCccEEeeeeEecC---CCeEEEEEECcCHH--H
Confidence 589999999999999999986521 1111 11222221111110 01112467777742 2
Q ss_pred hhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCc-eEEEeeccCCCC
Q 004228 112 FSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYR-TIGIITKLDIMD 169 (767)
Q Consensus 112 ~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~R-TIGVlTK~Dl~d 169 (767)
| +..........+. |+++...+..++ .++++.++..|.+ .|.|+||+|+++
T Consensus 78 ~------~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 78 Y------IKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred H------HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 2 1111111112222 677777665443 3455555556775 779999999985
No 111
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.02 E-value=0.00053 Score=69.02 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=58.0
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCC-------ccCcceeeh--------hcccC--CcccccccccCCCCccc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-------CTRRPLVLQ--------LLQTK--TDEEYGEFLHLPGKRFY 110 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~-------~TR~Pl~l~--------l~~~~--~~~~~~~f~~~pg~~~~ 110 (767)
.-|+|+|.-++|||||+++|++..-.....+. ....+.+.. ..... .....-.|++.||. .
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~--~ 81 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH--E 81 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS--H
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc--c
Confidence 46999999999999999999866321111000 000111000 00000 00112346677873 2
Q ss_pred ChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 111 DFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 111 d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
+|. . ++... ....+. |++|+..+..+. .+.++.+...+.+.|.|+||+|++
T Consensus 82 ~f~--~-~~~~~---~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFI--K-EMIRG---LRQADIAILVVDANDGIQPQT-EEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHH--H-HHHHH---HTTSSEEEEEEETTTBSTHHH-HHHHHHHHHTT-SEEEEEETCTSS
T ss_pred cee--e-cccce---ecccccceeeeeccccccccc-ccccccccccccceEEeeeeccch
Confidence 221 1 11111 111222 778887764433 444455555678899999999998
No 112
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.01 E-value=0.0013 Score=64.69 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|++||+.++|||||+++|++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~ 23 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLEL 23 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHH
Confidence 3899999999999999999874
No 113
>CHL00071 tufA elongation factor Tu
Probab=97.01 E-value=0.0013 Score=74.63 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=60.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-----------------CCccCcceeehhcccCCcccccccccCCCCccc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-----------------DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY 110 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-----------------g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~ 110 (767)
-.|+++|..++|||||+++|++..- ..+. .+.|+-.....+.. ...--.|++.||..
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~-~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~---~~~~~~~iDtPGh~-- 86 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLA-AKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET---ENRHYAHVDCPGHA-- 86 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC-ccccccccccccccCChhhhcCCEeEEccEEEEcc---CCeEEEEEECCChH--
Confidence 3599999999999999999997521 1000 11122211111110 01112477888832
Q ss_pred ChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCc-eEEEeeccCCCCC
Q 004228 111 DFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYR-TIGIITKLDIMDR 170 (767)
Q Consensus 111 d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~R-TIGVlTK~Dl~d~ 170 (767)
+| ++..+.. ..+.+. |++|...+..++ .++++.++..|.+ .|.|+||+|+++.
T Consensus 87 ~~--~~~~~~~----~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 87 DY--VKNMITG----AAQMDGAILVVSAADGPMPQT-KEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HH--HHHHHHH----HHhCCEEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 22 2211211 112222 777877775554 4555556666877 6689999999864
No 114
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.00 E-value=0.0027 Score=65.37 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
..|+|||++++||||+|+.+++..|.+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~ 30 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV 30 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 4799999999999999999999887443
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.00 E-value=0.004 Score=61.30 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.-+.|+|||..+||||||+++|+|..+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~ 39 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI 39 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC
Confidence 457899999999999999999999854
No 116
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.99 E-value=0.0019 Score=69.14 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|++||..++|||||+|+|+.
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~ 24 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLL 24 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 117
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.99 E-value=0.0051 Score=60.40 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
||++||++++||||++..+++-.|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~ 24 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS 24 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC
Confidence 799999999999999999998865
No 118
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.99 E-value=0.0015 Score=78.94 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccC-CcccccccccCCCCcccChhHHHHHHHHHHh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK-TDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~-~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~ 124 (767)
..|.|+|+|..++||||||++|.+..+.....++.|.-.-...+.... .....-.|++.||. .+|..++..--
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh--e~F~~mr~rg~---- 316 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH--EAFSSMRSRGA---- 316 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcH--HHHHHHHHHHH----
Confidence 668999999999999999999999876433334444422111111000 01122357788883 33433332111
Q ss_pred hhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 125 KEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 125 ~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+.+- |+++...+..+ ..+.++.+...+.+.|.|+||+|+.+
T Consensus 317 --~~aDiaILVVDA~dGv~~Q-T~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 317 --NVTDIAILIIAADDGVKPQ-TIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred --HHCCEEEEEEECcCCCChh-hHHHHHHHHhcCceEEEEEECCCccc
Confidence 11111 56665443222 23344444556889999999999975
No 119
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.98 E-value=0.0016 Score=63.71 Aligned_cols=24 Identities=33% Similarity=0.745 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.+||||||++.+.+-.|
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~ 25 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 689999999999999999999876
No 120
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.96 E-value=0.0016 Score=79.11 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
.-|-|+|+|..++||||||++|.+..+..-..++.|.-.....+.. ....-.|++.||. .+|..++..-..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~---~~~~ItfiDTPGh--e~F~~m~~rga~---- 359 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET---NGGKITFLDTPGH--EAFTAMRARGAQ---- 359 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE---CCEEEEEEECCCC--ccchhHHHhhhh----
Confidence 5599999999999999999999987653222334443221111110 0122457899984 345444421111
Q ss_pred hhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
..+. |+++...+..+ ....++.++..|...|.|+||+|+.+
T Consensus 360 --~aDiaILVVdAddGv~~q-T~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 360 --VTDIVVLVVAADDGVMPQ-TIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred --hCCEEEEEEECCCCCCHh-HHHHHHHHHhcCCcEEEEEECccccc
Confidence 1111 56665444222 23334445556889999999999964
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.96 E-value=0.0089 Score=57.97 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEcCCCCchHHHHHHHhCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~ 70 (767)
|+|||.+++|||||++.|++.
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 899999999999999999986
No 122
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.96 E-value=0.0021 Score=62.58 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
.|+|||+.++|||||++.+++-.|-|.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~ 28 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ 28 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC
Confidence 699999999999999999998877544
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.94 E-value=0.0042 Score=61.97 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
..-.+|+++|.++|||||++++|++..+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~ 44 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRL 44 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5678999999999999999999999765
No 124
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.93 E-value=0.0026 Score=62.46 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
..|+|||++++||||+++++++..|
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~ 27 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF 27 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 5799999999999999999998876
No 125
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.93 E-value=0.00098 Score=65.05 Aligned_cols=56 Identities=32% Similarity=0.328 Sum_probs=42.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCC-CccCcceeehhcccCCcccccccccCCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPG 106 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g-~~TR~Pl~l~l~~~~~~~~~~~f~~~pg 106 (767)
..-++|+|+|.+++||||++++|+|....+.+.+ .+||++..+.+. ....+++.||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~------~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD------NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec------CCEEEEECCC
Confidence 4668999999999999999999999865566553 788888766542 2234566676
No 126
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.92 E-value=0.0036 Score=60.56 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
.|+|||+.+||||||+.+|.+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999985
No 127
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.90 E-value=0.002 Score=65.35 Aligned_cols=26 Identities=19% Similarity=0.531 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
+|+|||+.++||||+|+.+++..|.+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~ 26 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP 26 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc
Confidence 48999999999999999999988744
No 128
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.89 E-value=0.0041 Score=62.17 Aligned_cols=27 Identities=30% Similarity=0.504 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
..|+|+|+.++||||+++.+++..|-+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~ 27 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE 27 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 369999999999999999999998743
No 129
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.89 E-value=0.0021 Score=64.45 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-+.|++||.++|||||+++.++|..|
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~ 42 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRL 42 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 38899999999999999999999865
No 130
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.88 E-value=0.0021 Score=76.18 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
.-|.|+++|..++||||||++|.+..+.....++.|+---...+... ...--.|++.||. .+|..++. +
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~--~~~~i~~iDTPGh--e~F~~~r~-------r 154 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE--DGKMITFLDTPGH--EAFTSMRA-------R 154 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC--CCcEEEEEECCCC--cchhhHHH-------h
Confidence 55899999999999999999999987644444444543221111110 0112357788984 34544432 1
Q ss_pred hhc-CCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EAG-GNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~g-~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+. .+- |++++.... ...+..++.....+...|.|+||+|+.+
T Consensus 155 ga~~aDiaILVVda~dgv~-~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVM-PQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred hhccCCEEEEEEECCCCCC-HhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 111 111 555554332 2223444444556889999999999864
No 131
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.88 E-value=0.004 Score=63.16 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
.|||||+.++||||+|+.+++-.|.+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~ 27 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ 27 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 69999999999999999999887643
No 132
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.86 E-value=0.0039 Score=61.57 Aligned_cols=26 Identities=42% Similarity=0.660 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
-.|+|||+.++||||+|..+++-.|.
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~ 30 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFS 30 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 47999999999999999999998874
No 133
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=96.86 E-value=0.0025 Score=64.24 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.|+++|+.++|||||+++|++.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~ 23 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEI 23 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999984
No 134
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=96.85 E-value=0.0034 Score=60.96 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
.|+|||+.+|||||+|+.+..-.|.+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~~~~ 29 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIFVEK 29 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcc
Confidence 699999999999999999986656443
No 135
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.84 E-value=0.0042 Score=60.67 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
+-+|+|||+.++||||+++.+.+..|.+.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~ 33 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQ 33 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcC
Confidence 45899999999999999999998877543
No 136
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.83 E-value=0.0022 Score=68.37 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=19.4
Q ss_pred EEEEcCCCCchHHHHHHHhCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~ 70 (767)
|++||..+||||||+|+|.+.
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999754
No 137
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.83 E-value=0.0018 Score=66.50 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
+|+|||..++|||||+|+|++..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~ 23 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDS 23 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHc
Confidence 58999999999999999998653
No 138
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.81 E-value=0.0049 Score=62.59 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
...|+|||+.++||||+|+.+.+..|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~ 31 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF 31 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999876
No 139
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.81 E-value=0.0047 Score=65.03 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=57.0
Q ss_pred EEEEcCCCCchHHHHHHHhCCCCccc--c--CCCccC---cceee--------hhcccCCcccccccccCCCCcccChhH
Q 004228 50 VAVVGSQSSGKSSVLEALVGRDFLPR--G--NDICTR---RPLVL--------QLLQTKTDEEYGEFLHLPGKRFYDFSE 114 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~flPr--~--~g~~TR---~Pl~l--------~l~~~~~~~~~~~f~~~pg~~~~d~~~ 114 (767)
|+++|..++|||||+|+|+...-... | .+..|. .|.+. .+.........-.|++.||. .+|..
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~--~~f~~ 79 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGH--MDFIA 79 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCc--cchHH
Confidence 79999999999999999976421111 1 111111 11110 00000000111235677874 33432
Q ss_pred -HHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 115 -IRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 115 -i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+...+. +.+. |+++...+.. ....+.+.++..|.+.|.|+||.|+..
T Consensus 80 ~~~~~l~-------~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 80 EVERSLS-------VLDGAILVISAVEGVQA-QTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHH-------HhCeEEEEEeCCCCCCH-HHHHHHHHHHHcCCCEEEEEECccccC
Confidence 221111 1111 6666666543 233445555556899999999999874
No 140
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.80 E-value=0.0032 Score=74.70 Aligned_cols=108 Identities=26% Similarity=0.354 Sum_probs=57.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC--Ccccc-CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD--FLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~--flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
-|+++|..++|||||+++|+|.. .+|-. ..+.|.- +..........-..|++.||.. +| +......
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid---~~~~~~~~~~~~v~~iDtPGhe--~f------~~~~~~g 70 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTID---LGFAYFPLPDYRLGFIDVPGHE--KF------ISNAIAG 70 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEE---eEEEEEEeCCEEEEEEECCCHH--HH------HHHHHhh
Confidence 38999999999999999999953 22311 1122211 1111110011123466777731 11 1111111
Q ss_pred hhcCCc---cccCCCccccc--HHHHHHHHhCcCCCc-eEEEeeccCCCCC
Q 004228 126 EAGGNK---VTPANSDLANS--DALQIAGIADPDGYR-TIGIITKLDIMDR 170 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~ans--~aL~la~~vDP~G~R-TIGVlTK~Dl~d~ 170 (767)
+.+.+. |++++.++..+ +.+.+++. .|.. .|.|+||+|+++.
T Consensus 71 ~~~aD~aILVVDa~~G~~~qT~ehl~il~~---lgi~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 71 GGGIDAALLVVDADEGVMTQTGEHLAVLDL---LGIPHTIVVITKADRVNE 118 (581)
T ss_pred hccCCEEEEEEECCCCCcHHHHHHHHHHHH---cCCCeEEEEEECCCCCCH
Confidence 222222 67777654333 33444443 4666 9999999999864
No 141
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.80 E-value=0.0024 Score=64.36 Aligned_cols=71 Identities=25% Similarity=0.296 Sum_probs=47.5
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCcc-------ccC--CCccCcceeehhccc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLP-------RGN--DICTRRPLVLQLLQT 92 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flP-------r~~--g~~TR~Pl~l~l~~~ 92 (767)
+..+-++++.|.+.+. .-..|++||.+|+|||||||+|.+..... ..+ ..+||-|..+.+..
T Consensus 110 ~~gi~eL~~~l~~~l~--------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~- 180 (190)
T cd01855 110 GWGVEELINAIKKLAK--------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN- 180 (190)
T ss_pred CCCHHHHHHHHHHHhh--------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-
Confidence 4456566666665432 22579999999999999999999864322 111 25888887776632
Q ss_pred CCcccccccccCCC
Q 004228 93 KTDEEYGEFLHLPG 106 (767)
Q Consensus 93 ~~~~~~~~f~~~pg 106 (767)
-..+++.||
T Consensus 181 -----~~~~~DtPG 189 (190)
T cd01855 181 -----GKKLYDTPG 189 (190)
T ss_pred -----CCEEEeCcC
Confidence 135667776
No 142
>COG2262 HflX GTPases [General function prediction only]
Probab=96.79 E-value=0.0062 Score=67.93 Aligned_cols=120 Identities=21% Similarity=0.365 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCC-CccCccee--ehhcccCC---cccccccc-cCCCCcccChhHH
Q 004228 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLV--LQLLQTKT---DEEYGEFL-HLPGKRFYDFSEI 115 (767)
Q Consensus 43 ~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g-~~TR~Pl~--l~l~~~~~---~~~~~~f~-~~pg~~~~d~~~i 115 (767)
..-..|+|+.||-.|||||||+|+|+|-.. +..+. -.|=.|+- +.+..... .+.. -|+ ++|- .+
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTV-GFI~~LP~-------~L 258 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTV-GFIRDLPH-------PL 258 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCc-cCcccCCh-------HH
Confidence 346999999999999999999999999875 44432 22222221 11111000 0111 122 2221 12
Q ss_pred HHHHHHHHhhhhcCCc---cccCCCc-ccc--cHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 116 RREIQAQTDKEAGGNK---VTPANSD-LAN--SDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 116 ~~~i~~~t~~~~g~n~---V~~a~~D-~an--s~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
-.....-.+......- |++|..+ +.. ....++.++++-...++|-|+||.|++...
T Consensus 259 V~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 259 VEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE 320 (411)
T ss_pred HHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch
Confidence 2211111111111121 5554443 211 233667888888889999999999998644
No 143
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=96.79 E-value=0.003 Score=61.08 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|+|||++++||||++++|+...+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~ 24 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV 24 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC
Confidence 489999999999999999987765
No 144
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.79 E-value=0.0059 Score=62.42 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..++|||||+++|+|.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999998
No 145
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.78 E-value=0.0032 Score=74.61 Aligned_cols=116 Identities=18% Similarity=0.276 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccC------cceeehhcccCC-cc----cc----cccccCCCCc
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTR------RPLVLQLLQTKT-DE----EY----GEFLHLPGKR 108 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR------~Pl~l~l~~~~~-~~----~~----~~f~~~pg~~ 108 (767)
.+.-|.|+++|..++||||||++|.|..+.-...|..|+ +|.......... .. .+ -.|++.||.
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~- 81 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH- 81 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh-
Confidence 356799999999999999999999988532222344443 222211100000 00 00 235677763
Q ss_pred ccChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 109 FYDFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 109 ~~d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
.+|..++.. .+...+- |+++...+..+. ...++.+...+...|.|+||+|+.
T Consensus 82 -e~f~~~~~~------~~~~aD~~IlVvDa~~g~~~qt-~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 82 -EAFTNLRKR------GGALADIAILVVDINEGFQPQT-IEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred -HHHHHHHHH------hHhhCCEEEEEEECCCCCCHhH-HHHHHHHHHcCCCEEEEEECcCCc
Confidence 234333321 1111221 566665443332 233333344688899999999986
No 146
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=96.78 E-value=0.003 Score=61.18 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
+|+++|+.++||||+++.+.+-.|.+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~ 29 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEK 29 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 699999999999999999998877443
No 147
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.78 E-value=0.0013 Score=63.85 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++||||++++|++..|
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999999987
No 148
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=96.78 E-value=0.0059 Score=60.40 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=23.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|+|||++++||||+++.+++..|.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~ 26 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD 26 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5999999999999999999998873
No 149
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.78 E-value=0.0048 Score=60.35 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.-..|+++|.++|||||++++|+|..+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~ 39 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC
Confidence 357899999999999999999999854
No 150
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.75 E-value=0.0034 Score=61.98 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|++||..++||||+|+.+++..|
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~ 26 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999999875
No 151
>PLN03118 Rab family protein; Provisional
Probab=96.69 E-value=0.0056 Score=62.68 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.+|+|||+.++||||++++|.+..|
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~ 39 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV 39 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3899999999999999999999865
No 152
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.66 E-value=0.0019 Score=64.78 Aligned_cols=39 Identities=28% Similarity=0.228 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcce
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPL 85 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl 85 (767)
.-+|+|||..|+||||||++|+|....+++. .++||.-.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~ 156 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ 156 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE
Confidence 4589999999999999999999987666665 35677543
No 153
>PLN03110 Rab GTPase; Provisional
Probab=96.63 E-value=0.0071 Score=62.43 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
+-.|+|||++++|||||++.|++..|.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~ 38 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFC 38 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 348999999999999999999998763
No 154
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.63 E-value=0.0046 Score=60.31 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|+|||++++||||+|+.+++-.|
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f 26 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTF 26 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999999876
No 155
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.57 E-value=0.009 Score=61.43 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|++||+.++||||+|+.+++-.|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~ 25 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF 25 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998876
No 156
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.53 E-value=0.0063 Score=59.54 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
.|++||..+|||||+++++++..|.+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~ 29 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIES 29 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcc
Confidence 599999999999999999998887544
No 157
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.52 E-value=0.0062 Score=63.51 Aligned_cols=109 Identities=19% Similarity=0.340 Sum_probs=57.1
Q ss_pred CCCCe-EEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHH
Q 004228 45 IELPQ-VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (767)
Q Consensus 45 i~LPq-IvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t 123 (767)
..-|. |+|||..++|||||+++|.+.. ....-.....++ .+... . ..--.|++.||.. ..+.+.+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~--~~~~~~~~~g~i--~i~~~-~-~~~i~~vDtPg~~----~~~l~~a---- 101 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNY--TKQNISDIKGPI--TVVTG-K-KRRLTFIECPNDI----NAMIDIA---- 101 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc--ccCccccccccE--EEEec-C-CceEEEEeCCchH----HHHHHHH----
Confidence 34454 8999999999999999998862 111100111111 11111 1 1112466777521 1121111
Q ss_pred hhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCc-eEEEeeccCCCCCc
Q 004228 124 DKEAGGNK---VTPANSDLANSDALQIAGIADPDGYR-TIGIITKLDIMDRG 171 (767)
Q Consensus 124 ~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~R-TIGVlTK~Dl~d~g 171 (767)
...+. |+++..++..++ ..+...+...|.. .|+|+||+|+++..
T Consensus 102 ---k~aDvVllviDa~~~~~~~~-~~i~~~l~~~g~p~vi~VvnK~D~~~~~ 149 (225)
T cd01882 102 ---KVADLVLLLIDASFGFEMET-FEFLNILQVHGFPRVMGVLTHLDLFKKN 149 (225)
T ss_pred ---HhcCEEEEEEecCcCCCHHH-HHHHHHHHHcCCCeEEEEEeccccCCcH
Confidence 11121 556666554444 3444444445655 57799999998543
No 158
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.49 E-value=0.0062 Score=65.38 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=57.8
Q ss_pred EEEEcCCCCchHHHHHHHh---CC-CCccccC---CCccCcceeehhcccCC----ccccc----ccccCCCCcccChhH
Q 004228 50 VAVVGSQSSGKSSVLEALV---GR-DFLPRGN---DICTRRPLVLQLLQTKT----DEEYG----EFLHLPGKRFYDFSE 114 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~---G~-~flPr~~---g~~TR~Pl~l~l~~~~~----~~~~~----~f~~~pg~~~~d~~~ 114 (767)
|++||..++|||||+|+|. |. ..+-+.+ ..+...|.|..-.-+-. .-+|. .|++.||. .+|..
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~--~df~~ 79 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGH--VDFTI 79 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCc--HHHHH
Confidence 7999999999999999995 43 1111111 11222221110000000 01222 35688873 23321
Q ss_pred HHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 115 IRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 115 i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
++.... ...+. |++|...+..++ .++++.+...|.+.|.|+||+|+.+
T Consensus 80 ---~~~~~l---~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 80 ---EVERSL---RVLDGAVAVFDAVAGVEPQT-ETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred ---HHHHHH---HHcCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCCCC
Confidence 111111 11111 667766654332 4555555567899999999999975
No 159
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.47 E-value=0.0034 Score=60.31 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=37.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~ 107 (767)
.++|+|.+|+|||||+++|.|..++..+. ..+||....+.+.. -..+++.||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP------TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC------CEEEEECCCc
Confidence 89999999999999999999998754433 34677654443311 1346677764
No 160
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.47 E-value=0.0071 Score=59.92 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++|||||+..+.+-.|
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f 27 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF 27 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 699999999999999999998877
No 161
>PLN03127 Elongation factor Tu; Provisional
Probab=96.44 E-value=0.0059 Score=70.16 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=62.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC-----------------CCccCcceeehhcccCCcccccccccCCCCc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-----------------DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-----------------g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~ 108 (767)
.-..|+++|..++|||||+++|+|... ..|. .+.|+-.....+.. ...--.|++.||..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~---~~~~i~~iDtPGh~ 135 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET---AKRHYAHVDCPGHA 135 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHH-HhhcccceeeccccCChhHhhcCceeeeeEEEEcC---CCeEEEEEECCCcc
Confidence 344699999999999999999986520 1111 12233222222111 11112477888842
Q ss_pred ccChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCce-EEEeeccCCCC
Q 004228 109 FYDFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRT-IGIITKLDIMD 169 (767)
Q Consensus 109 ~~d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RT-IGVlTK~Dl~d 169 (767)
+| +...+... ...+. |++|+..+..++ .+++..+...|.+. |.|+||+|+++
T Consensus 136 --~f--~~~~~~g~----~~aD~allVVda~~g~~~qt-~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 136 --DY--VKNMITGA----AQMDGGILVVSAPDGPMPQT-KEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred --ch--HHHHHHHH----hhCCEEEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 22 22222221 11222 778877665554 45555555568775 78999999985
No 162
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.44 E-value=0.0079 Score=62.38 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++|||||++.+++-.|
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~ 25 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEY 25 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCc
Confidence 699999999999999999976655
No 163
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.42 E-value=0.0038 Score=61.35 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+++|||||+++.+....|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~ 25 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999987655
No 164
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=96.42 E-value=0.034 Score=54.68 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.|+++|..+|||||+++.|+|.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999987
No 165
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=96.42 E-value=0.0063 Score=72.31 Aligned_cols=108 Identities=24% Similarity=0.214 Sum_probs=59.6
Q ss_pred cCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCc-ccChhHHHHHHHHHHhhhhcCCc
Q 004228 54 GSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDFSEIRREIQAQTDKEAGGNK 131 (767)
Q Consensus 54 G~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~d~~~i~~~i~~~t~~~~g~n~ 131 (767)
|.+|+||||++|+|+|..+ ..+. .++|+-..+-.+... ... -.+.|.||.. +..... .+.+....-...+.+-
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~--~~~-i~lvDtPG~~~~~~~s~-~e~v~~~~l~~~~aDv 75 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQ--GED-IEIVDLPGIYSLTTFSL-EEEVARDYLLNEKPDL 75 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEEC--CeE-EEEEECCCccccCccch-HHHHHHHHHhhcCCCE
Confidence 8999999999999999975 4443 345554433222221 112 3577899852 222211 1111111000001111
Q ss_pred ---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 132 ---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 132 ---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
|+++.. + ...+.+..++...|.+.|.|+||.|+.+
T Consensus 76 vI~VvDat~-l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 76 VVNVVDASN-L--ERNLYLTLQLLELGIPMILALNLVDEAE 113 (591)
T ss_pred EEEEecCCc-c--hhhHHHHHHHHhcCCCEEEEEehhHHHH
Confidence 445443 2 2235666666667999999999999864
No 166
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.42 E-value=0.013 Score=58.04 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
-.+|+++|.+++||||+++.|++-.|.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~ 41 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV 41 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC
Confidence 358999999999999999999877664
No 167
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.39 E-value=0.025 Score=55.32 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
..|+|||+.+|||||++..+.+-.|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999999876
No 168
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.37 E-value=0.015 Score=59.63 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=23.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
||||||+.++||||+|..+..-.|-
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~ 26 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC 26 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC
Confidence 8999999999999999999988773
No 169
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.30 E-value=0.0086 Score=60.19 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=22.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++||||+++.+++-.|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f 24 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF 24 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC
Confidence 489999999999999999998766
No 170
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.22 E-value=0.014 Score=60.90 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=22.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|||||+.++||||||..+++..|
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f 26 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY 26 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999999877
No 171
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.21 E-value=0.014 Score=56.79 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
+|+|||+.++||||++..+.+..|.+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~ 28 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSS 28 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC
Confidence 689999999999999999999887544
No 172
>PRK00007 elongation factor G; Reviewed
Probab=96.19 E-value=0.0099 Score=72.05 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHh---CCCCcc--c--cCCCccCcceee-----------hhcccCCcccccccccCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALV---GRDFLP--R--GNDICTRRPLVL-----------QLLQTKTDEEYGEFLHLPGK 107 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~---G~~flP--r--~~g~~TR~Pl~l-----------~l~~~~~~~~~~~f~~~pg~ 107 (767)
.+..|++||..++|||||+|+|. |..-.. + +.-.+.+.|.|- .+.. ....-.|++.||.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~---~~~~~~liDTPG~ 85 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW---KDHRINIIDTPGH 85 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE---CCeEEEEEeCCCc
Confidence 45689999999999999999995 532100 0 111222222211 1100 0112346788873
Q ss_pred cccChh-HHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 108 RFYDFS-EIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 108 ~~~d~~-~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
.||. ++...+. ..+. |++|...+..++ ..+++.+...|...|.|+||+|+.+..
T Consensus 86 --~~f~~ev~~al~-------~~D~~vlVvda~~g~~~qt-~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 86 --VDFTIEVERSLR-------VLDGAVAVFDAVGGVEPQS-ETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred --HHHHHHHHHHHH-------HcCEEEEEEECCCCcchhh-HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 3332 1111111 1112 677877776655 567777777899999999999998644
No 173
>PLN03108 Rab family protein; Provisional
Probab=96.18 E-value=0.022 Score=58.42 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcccc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~ 76 (767)
.-.|+|||+.++||||+|+.|++..|.+..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~ 35 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH 35 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC
Confidence 357999999999999999999998875543
No 174
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=96.16 E-value=0.016 Score=57.08 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
..+|++||.+++||||++..|++..|.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~ 35 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV 35 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc
Confidence 468999999999999999999877663
No 175
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.16 E-value=0.0053 Score=57.96 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=28.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-+|++||..++||++|.++|-|-..+++...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQ 32 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQ 32 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccc
Confidence 4799999999999999999999998888764
No 176
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.14 E-value=0.015 Score=62.59 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=70.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC-ccCcceeehhcccCCcccccccccCCCCcccChhHHHHHH--HH----
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREI--QA---- 121 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~-~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i--~~---- 121 (767)
+|+|||..|+|||+|.|.++|.+..|+.... +||+-+-= .... .+.--.|.+.||-.... ++|... .+
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilg-i~ts--~eTQlvf~DTPGlvs~~--~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILG-IITS--GETQLVFYDTPGLVSKK--MHRRHHLMMSVLQN 148 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeE-EEec--CceEEEEecCCcccccc--hhhhHHHHHHhhhC
Confidence 7999999999999999999999998888753 45543211 1111 22334577888753321 222211 11
Q ss_pred HHhhhhcCCc---cccCC--CcccccHHHHHHHHhCcCCCceEEEeeccCCCCCccc
Q 004228 122 QTDKEAGGNK---VTPAN--SDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD 173 (767)
Q Consensus 122 ~t~~~~g~n~---V~~a~--~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd 173 (767)
.-........ |+++. .-.-+...|.+.+++- ....|-|++|.|+..+-..
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~ 203 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS--KIPSILVMNKIDKLKQKRL 203 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh--cCCceeeccchhcchhhhH
Confidence 0000000111 33333 4444566788888874 5678889999999876544
No 177
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.12 E-value=0.018 Score=58.76 Aligned_cols=115 Identities=23% Similarity=0.325 Sum_probs=61.3
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCC--CccCcceeehhcccCCcccc-cccccCCCCcccChhHHHHHHHHHHh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEY-GEFLHLPGKRFYDFSEIRREIQAQTD 124 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g--~~TR~Pl~l~l~~~~~~~~~-~~f~~~pg~~~~d~~~i~~~i~~~t~ 124 (767)
-+|||+|+.+|||||+++++.+-.| +.+.. +.+-+|......... .. ....+.+| ..+++. -...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---~~~~~~~Dt~g-----q~~~~~---~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTIEPYRR---NIKLQLWDTAG-----QEEYRS---LRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEEEeCCC---EEEEEeecCCC-----HHHHHH---HHHH
Confidence 4899999999999999999999986 43322 222333222221110 00 00012222 222221 1122
Q ss_pred hhhcCCc---ccc----CCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccH
Q 004228 125 KEAGGNK---VTP----ANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDA 174 (767)
Q Consensus 125 ~~~g~n~---V~~----a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~ 174 (767)
.+.|.+. +.. ...+-........++..++++...|-|.+|.|+-+.....
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~ 130 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSS 130 (219)
T ss_pred HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHH
Confidence 3345554 111 1112222333445666666788999999999998765443
No 178
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=96.11 E-value=0.0084 Score=58.65 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.8
Q ss_pred EEEEcCCCCchHHHHHHHhCCCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~f 72 (767)
|+|||+.++||||++..+.+..|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~ 23 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF 23 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC
Confidence 68999999999999999999886
No 179
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.10 E-value=0.02 Score=56.91 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++||||+|+.+.+..|
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~ 25 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF 25 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999999876
No 180
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.09 E-value=0.0084 Score=64.48 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=52.0
Q ss_pred CchHHHHHHHHHHHHHhCC---CC--CCCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcc
Q 004228 23 GSVIPLVNKLQDIFAQLGS---QS--TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDE 96 (767)
Q Consensus 23 ~~~i~lin~L~d~~~~~G~---~~--~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~ 96 (767)
..+-.+++.|.+.+..... .. .-.-.+|+|||.+|+||||+||+|+|.....++. ..+||.+..+.+.
T Consensus 89 ~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~------ 162 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS------ 162 (276)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC------
Confidence 3455566666655432110 00 0133579999999999999999999987655554 3578876544442
Q ss_pred cccccccCCCCcccC
Q 004228 97 EYGEFLHLPGKRFYD 111 (767)
Q Consensus 97 ~~~~f~~~pg~~~~d 111 (767)
....+++.||-.+..
T Consensus 163 ~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 163 DGLELLDTPGILWPK 177 (276)
T ss_pred CCEEEEECCCcccCC
Confidence 123577888865443
No 181
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.08 E-value=0.019 Score=59.04 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||..++|||||+++|++..+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~ 25 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTH 25 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999998654
No 182
>PTZ00369 Ras-like protein; Provisional
Probab=96.06 E-value=0.018 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
..|+|||+.++||||+++.+.+-.|.
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~ 31 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI 31 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 68999999999999999999988763
No 183
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.01 E-value=0.017 Score=56.45 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=23.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|+|+|..++||||++..+.+-.|.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~ 26 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6899999999999999999988774
No 184
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.00 E-value=0.014 Score=69.55 Aligned_cols=107 Identities=23% Similarity=0.318 Sum_probs=57.4
Q ss_pred EEEEcCCCCchHHHHHHHhCCC--CccccC-CCccCcceeehhcccCC-cccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 50 VAVVGSQSSGKSSVLEALVGRD--FLPRGN-DICTRRPLVLQLLQTKT-DEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~--flPr~~-g~~TR~Pl~l~l~~~~~-~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
|+++|..++|||||+++|+|.. .+|-.. .+.|- .+....... ....-.|++.||. .+| +......
T Consensus 3 i~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI---~l~~~~~~~~~g~~i~~IDtPGh--e~f------i~~m~~g 71 (614)
T PRK10512 3 IATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTI---DLGYAYWPQPDGRVLGFIDVPGH--EKF------LSNMLAG 71 (614)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccchhcccCCceE---EeeeEEEecCCCcEEEEEECCCH--HHH------HHHHHHH
Confidence 7899999999999999999963 223211 11121 111111100 1122356777873 112 1111112
Q ss_pred hhcCCc---cccCCCcccccH--HHHHHHHhCcCCCc-eEEEeeccCCCCC
Q 004228 126 EAGGNK---VTPANSDLANSD--ALQIAGIADPDGYR-TIGIITKLDIMDR 170 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~ans~--aL~la~~vDP~G~R-TIGVlTK~Dl~d~ 170 (767)
+.+.+. |++++..+..++ -+.+++. .|.. .|.|+||+|++++
T Consensus 72 ~~~~D~~lLVVda~eg~~~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 72 VGGIDHALLVVACDDGVMAQTREHLAILQL---TGNPMLTVALTKADRVDE 119 (614)
T ss_pred hhcCCEEEEEEECCCCCcHHHHHHHHHHHH---cCCCeEEEEEECCccCCH
Confidence 222232 677776664443 3444444 3555 4799999999863
No 185
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=95.94 E-value=0.024 Score=59.99 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=22.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|+|||+.++||||+|+.+++-.|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f 25 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF 25 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999988776
No 186
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=95.94 E-value=0.0059 Score=63.69 Aligned_cols=37 Identities=38% Similarity=0.476 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC--CCccccCC--CccCc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR--DFLPRGND--ICTRR 83 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~--~flPr~~g--~~TR~ 83 (767)
..=-|+|+|.+++|||+|||.|+|. .| +.+.+ -|||-
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~~~~~T~g 46 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDTSQQTTKG 46 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCCCCCCccc
Confidence 3446899999999999999999999 65 77765 78883
No 187
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=95.94 E-value=0.023 Score=64.61 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.|||||.-++|||||+++|...
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~ 23 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHD 23 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHH
Confidence 5899999999999999999643
No 188
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.92 E-value=0.024 Score=67.98 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
...||+||..++|||||+++|+...
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~ 48 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDS 48 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHh
Confidence 3479999999999999999999753
No 189
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.89 E-value=0.0056 Score=56.16 Aligned_cols=24 Identities=33% Similarity=0.747 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|+|+|+.+|||||||++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 599999999999999999999986
No 190
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.86 E-value=0.0088 Score=64.71 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD 111 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d 111 (767)
-.+|+|||..|+||||+||+|+|.....++. .++||-+..+.+. .-..+++.||-.+.+
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~------~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG------KGLELLDTPGILWPK 180 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC------CcEEEEECCCcCCCC
Confidence 3579999999999999999999987655553 3678876444332 124477888865443
No 191
>PTZ00258 GTP-binding protein; Provisional
Probab=95.81 E-value=0.01 Score=66.87 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=34.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQL 89 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l 89 (767)
.-.+|++||..|+|||||+++|+|... ..+ -..||+-|..-.+
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v 63 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARV 63 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEE
Confidence 445899999999999999999999874 333 3679998876443
No 192
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=95.75 E-value=0.082 Score=54.34 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
+|+|||+.++||||++..+++-.|...
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~ 28 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGR 28 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 699999999999999999999887543
No 193
>PRK12735 elongation factor Tu; Reviewed
Probab=95.74 E-value=0.017 Score=65.42 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=58.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-----------------CCccCcceeehhcccCCcccccccccCCCCcccC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-----------------DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD 111 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-----------------g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d 111 (767)
.|+++|.-++|||||+++|++.. ...+. .+.|.-.....+. ....--.|++.||.. +
T Consensus 14 ~i~iiGhvd~GKSTL~~~L~~~~-~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~---~~~~~i~~iDtPGh~--~ 87 (396)
T PRK12735 14 NVGTIGHVDHGKTTLTAAITKVL-AKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE---TANRHYAHVDCPGHA--D 87 (396)
T ss_pred EEEEECcCCCCHHHHHHHHHHhh-hhcCCcccchhhhccCChhHHhcCceEEEeeeEEc---CCCcEEEEEECCCHH--H
Confidence 58999999999999999999731 11111 1222221111111 011112467777732 2
Q ss_pred hhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceE-EEeeccCCCC
Q 004228 112 FSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTI-GIITKLDIMD 169 (767)
Q Consensus 112 ~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTI-GVlTK~Dl~d 169 (767)
| +...+ ......+. |+++...+..++ .+++..+...|.+.| .|+||+|+++
T Consensus 88 f--~~~~~----~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 88 Y--VKNMI----TGAAQMDGAILVVSAADGPMPQT-REHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred H--HHHHH----hhhccCCEEEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 2 11111 11111222 677776665554 344555556688866 5799999985
No 194
>PLN03126 Elongation factor Tu; Provisional
Probab=95.73 E-value=0.026 Score=65.47 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=26.7
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCc-eEEEeeccCCCCC
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYR-TIGIITKLDIMDR 170 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~R-TIGVlTK~Dl~d~ 170 (767)
|++|...+..+. .+.++.++-.|.+ -|.|+||+|+++.
T Consensus 174 VVda~~G~~~qt-~e~~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 174 VVSGADGPMPQT-KEHILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred EEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEecccccCH
Confidence 778887765554 3445555556876 6789999999863
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=95.72 E-value=0.02 Score=65.36 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
-.|++||..++|||||+++|++.
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~ 29 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYE 29 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHH
Confidence 35899999999999999999844
No 196
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=95.59 E-value=0.035 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-.+|+|||.+++||||+++.+..-.|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~ 38 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES 38 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999964335
No 197
>PRK12736 elongation factor Tu; Reviewed
Probab=95.58 E-value=0.024 Score=64.11 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=58.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-----------------CCccCcceeehhcccCCcccccccccCCCCcccC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-----------------DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD 111 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-----------------g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d 111 (767)
.|+++|.-.+|||||+++|+|.. ...|. ...|+-.....+. ....--.|++.||.. +
T Consensus 14 ni~i~Ghvd~GKSTL~~~L~~~~-~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~---~~~~~i~~iDtPGh~--~ 87 (394)
T PRK12736 14 NIGTIGHVDHGKTTLTAAITKVL-AERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE---TEKRHYAHVDCPGHA--D 87 (394)
T ss_pred EEEEEccCCCcHHHHHHHHHhhh-hhhccccccchhhhcCCHHHHhcCccEEEEeeEec---CCCcEEEEEECCCHH--H
Confidence 49999999999999999999852 11111 1222221111111 011112467777732 2
Q ss_pred hhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCc-eEEEeeccCCCC
Q 004228 112 FSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYR-TIGIITKLDIMD 169 (767)
Q Consensus 112 ~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~R-TIGVlTK~Dl~d 169 (767)
| ++..+... ...+. |+++...+..++ .++++.+...|.. .|.|+||+|+++
T Consensus 88 f--~~~~~~~~----~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 88 Y--VKNMITGA----AQMDGAILVVAATDGPMPQT-REHILLARQVGVPYLVVFLNKVDLVD 142 (394)
T ss_pred H--HHHHHHHH----hhCCEEEEEEECCCCCchhH-HHHHHHHHHcCCCEEEEEEEecCCcc
Confidence 2 12111111 11122 677776665443 3444445555777 468899999985
No 198
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=95.54 E-value=0.029 Score=68.03 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCc-cc----cCC--CccCcceeeh------hc--ccCCcccccccccCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL-PR----GND--ICTRRPLVLQ------LL--QTKTDEEYGEFLHLPGKRFY 110 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~fl-Pr----~~g--~~TR~Pl~l~------l~--~~~~~~~~~~f~~~pg~~~~ 110 (767)
.+..|+|||..++|||||+|+|.+..-. .+ ..| .+.+.|.|.. .. .....+..-.|++.||..
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~-- 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV-- 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc--
Confidence 4568999999999999999999632110 01 111 1221121110 00 000001123466888753
Q ss_pred ChhH-HHHHHHHHHhhhhcCCccccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 111 DFSE-IRREIQAQTDKEAGGNKVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 111 d~~~-i~~~i~~~t~~~~g~n~V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
+|.. +...+... + +.=-|+++...+..++ ..+++.+...+...|.|+||+|+....
T Consensus 87 ~~~~~~~~~l~~~-D---~~ilVvda~~g~~~~~-~~~~~~~~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 87 DFTVEVERSLRVL-D---GAVAVLDAVGGVQPQS-ETVWRQANRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred chhHHHHHHHHHh-C---EEEEEEeCCCCCChhH-HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 3321 21111111 0 0001667766554443 455666666789999999999998543
No 199
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=95.52 E-value=0.04 Score=63.90 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-....|||||..++|||||+++|...
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~ 50 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHD 50 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHh
Confidence 356789999999999999999999755
No 200
>PRK00049 elongation factor Tu; Reviewed
Probab=95.50 E-value=0.022 Score=64.57 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=56.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-----------------CCccCcceeehhcccCCcccccccccCCCCcccC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-----------------DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD 111 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-----------------g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d 111 (767)
.|++||.-.+|||||+++|++.. ...+. .+.|+-...+.+.. ...--.|++.||.. +
T Consensus 14 ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~---~~~~i~~iDtPG~~--~ 87 (396)
T PRK00049 14 NVGTIGHVDHGKTTLTAAITKVL-AKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET---EKRHYAHVDCPGHA--D 87 (396)
T ss_pred EEEEEeECCCCHHHHHHHHHHhh-hhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC---CCeEEEEEECCCHH--H
Confidence 58999999999999999999842 11111 12222222111110 01112366777732 1
Q ss_pred hhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceE-EEeeccCCCC
Q 004228 112 FSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTI-GIITKLDIMD 169 (767)
Q Consensus 112 ~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTI-GVlTK~Dl~d 169 (767)
| +..........+. |+++...+..++ .+++..+...|.+.| .|+||+|+++
T Consensus 88 f------~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 88 Y------VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred H------HHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 1 1111111111222 677766554442 344444444577776 6899999985
No 201
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.43 E-value=0.05 Score=56.79 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=26.0
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
|+++...+..+. ..+++.+...|.+.|.|+||+|+.
T Consensus 103 VvD~~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 103 VVDAVEGVCVQT-ETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCcc
Confidence 666666554332 456666666789999999999986
No 202
>PRK12739 elongation factor G; Reviewed
Probab=95.43 E-value=0.044 Score=66.47 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhC---C-CCc---cccCCCccCcceeehhcccCC----cccc----cccccCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVG---R-DFL---PRGNDICTRRPLVLQLLQTKT----DEEY----GEFLHLPGKRFY 110 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G---~-~fl---Pr~~g~~TR~Pl~l~l~~~~~----~~~~----~~f~~~pg~~~~ 110 (767)
.+..|+|||..++|||||+|+|.. . ..+ .-++..+.+.|.|..-.-+-. .-+| -.|++.||. .
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~--~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH--V 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH--H
Confidence 456799999999999999999964 2 111 001112222222211000000 0122 235677773 2
Q ss_pred ChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 111 DFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 111 d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+|.. ++.... ...+. |++|...+..++ ..+++.+...|...|.|+||+|+...
T Consensus 85 ~f~~---e~~~al---~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DFTI---EVERSL---RVLDGAVAVFDAVSGVEPQS-ETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHH---HHHHHH---HHhCeEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2211 111111 11122 677777775554 46667777789999999999999853
No 203
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=95.40 E-value=0.035 Score=57.46 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=18.1
Q ss_pred EEEEcCCCCchHHHHHHHh
Q 004228 50 VAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~ 68 (767)
|++||...+|||||+++|.
T Consensus 2 v~i~Gh~~~GKttL~~~ll 20 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLL 20 (219)
T ss_pred EEEecCCCCChHHHHHHHH
Confidence 7999999999999999995
No 204
>PLN00223 ADP-ribosylation factor; Provisional
Probab=95.36 E-value=0.089 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.+|++||+++|||||++..++.-.|
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~ 42 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEI 42 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC
Confidence 5899999999999999999986555
No 205
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=95.36 E-value=0.059 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=22.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|+|||+.++||||++..+.+-.|.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~ 26 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD 26 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6899999999999999999888773
No 206
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=95.33 E-value=0.054 Score=56.08 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
..-.|+|||++++||||+++.++.-.|
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f 38 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF 38 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCC
Confidence 335899999999999999999877666
No 207
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.31 E-value=0.04 Score=60.74 Aligned_cols=60 Identities=27% Similarity=0.326 Sum_probs=38.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChh
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS 113 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~ 113 (767)
.+.|||-.|+||||+||+|.|.... .+.++|-.+.=.+.-..+.....++.||..+.++.
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~~-----~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~~ 193 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKVA-----KTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKFD 193 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccce-----eeCCCCceecceEEEEcCCCeEEecCCCcCCCCcc
Confidence 4899999999999999999999752 33344432211111011233456789987665543
No 208
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.30 E-value=0.026 Score=63.78 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=59.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-----------------CCccCcceeehhcccCCcccccccccCCCCccc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-----------------DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY 110 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-----------------g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~ 110 (767)
-.|+++|...+|||||+++|++.- ...|. ...|+....+.+.. ...--.|++.||..
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~---~~~~~~liDtpGh~-- 86 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVL-AKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET---ENRHYAHVDCPGHA-- 86 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhH-HHhhcccccccccccCCHHHHhcCcceeeEEEEEcC---CCEEEEEEECCchH--
Confidence 359999999999999999998641 11111 23344333222211 11112466777731
Q ss_pred ChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceE-EEeeccCCCCC
Q 004228 111 DFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTI-GIITKLDIMDR 170 (767)
Q Consensus 111 d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTI-GVlTK~Dl~d~ 170 (767)
+| ++..+... .+.+. |++|...+..++ .+++..+...|...| .|+||+|+++.
T Consensus 87 ~f--~~~~~~~~----~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 87 DY--VKNMITGA----AQMDGAILVVSATDGPMPQT-REHILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HH--HHHHHHHH----hhCCEEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEEEecccCCH
Confidence 22 11111111 11121 677776554443 355555555677766 68999999863
No 209
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=95.24 E-value=0.064 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
|.|+++|..+||||||+..|++..|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~ 25 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY 25 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999875
No 210
>PRK09602 translation-associated GTPase; Reviewed
Probab=95.12 E-value=0.02 Score=64.79 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCccee
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~ 86 (767)
.+|++||..|+|||||+++|++..+....-..||+.|..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 489999999999999999999997632233568888865
No 211
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.00 E-value=0.018 Score=62.06 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=29.7
Q ss_pred EEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCccee
Q 004228 50 VAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLV 86 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~ 86 (767)
|++||-.|||||||+++|+|.+. ..+ -..||+-|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhcee
Confidence 57999999999999999999975 443 3678988754
No 212
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.00 E-value=0.022 Score=60.27 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=38.3
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-----C---CccCcceeehhcccCCcccccccccCCCCcccCh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-----D---ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDF 112 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-----g---~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~ 112 (767)
..++++|.+++|||||||+|.|...+..+. + .+||....+.+ .. +.+++.||-...++
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~------~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG------GLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC------cEEEeCCCccccCC
Confidence 479999999999999999999975443331 1 25665544444 11 34678888654333
No 213
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=95.00 E-value=0.028 Score=64.40 Aligned_cols=41 Identities=41% Similarity=0.577 Sum_probs=33.3
Q ss_pred HHHHHHHhCCC-CCCCCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 32 LQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 32 L~d~~~~~G~~-~~i~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
|+-....+|+. ..++---|+|.|+||+|||+|||.|.|..|
T Consensus 21 l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 21 LDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred HHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccCh
Confidence 44444456754 567888999999999999999999999987
No 214
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=94.98 E-value=0.022 Score=56.50 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=32.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQL 89 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l 89 (767)
.+.|++||.+++||||++++|.+..+...+. -.+|+....+.+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~ 158 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI 158 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe
Confidence 3589999999999999999999988754443 246766554443
No 215
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=94.97 E-value=0.083 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
+|+++|+.++||||++..+.+-.|.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~ 26 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6899999999999999999877663
No 216
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=94.96 E-value=0.027 Score=59.08 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=27.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcce
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPL 85 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl 85 (767)
+|++||..|+|||||+++|+|... ..+. ..+|..|.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~ 38 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCV 38 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccce
Confidence 689999999999999999999863 3332 34555443
No 217
>PRK12289 GTPase RsgA; Reviewed
Probab=94.94 E-value=0.025 Score=63.12 Aligned_cols=55 Identities=27% Similarity=0.323 Sum_probs=36.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC--C------CccCcceeehhcccCCcccccccccCCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--D------ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~--g------~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~ 109 (767)
.+||||.+++|||||||+|.|...+..+. | .+||...-+.+ + .-+.+++.||-..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l---~---~g~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL---P---NGGLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC---C---CCcEEEeCCCccc
Confidence 48999999999999999999876555443 1 25665432222 1 1134678887543
No 218
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=94.91 E-value=0.07 Score=60.65 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.|+++|.-++|||||+++|+|.
T Consensus 6 ~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 6 NIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred EEEEEccCCCCHHHHHHHHhCe
Confidence 5899999999999999999987
No 219
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=94.90 E-value=0.046 Score=65.08 Aligned_cols=108 Identities=21% Similarity=0.312 Sum_probs=57.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC--CccccCCCccCc-----cee------ehhcccCCcccc----cccccCCCCcccC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD--FLPRGNDICTRR-----PLV------LQLLQTKTDEEY----GEFLHLPGKRFYD 111 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~--flPr~~g~~TR~-----Pl~------l~l~~~~~~~~~----~~f~~~pg~~~~d 111 (767)
-|++||...+|||||+++|.... | .+ .+.++.+ |.| +..... .-.| -.+++.|| +.|
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~-~~-~~~v~~~~~D~~~~ErerGiTI~~~~~--~v~~~~~kinlIDTPG--h~D 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTF-RA-NEAVAERVMDSNDLERERGITILAKNT--AIRYNGTKINIVDTPG--HAD 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC-cc-cccceeecccCchHHHhCCccEEeeeE--EEEECCEEEEEEECCC--HHH
Confidence 48999999999999999997421 2 22 1212211 100 000000 0123 23567787 345
Q ss_pred hhH-HHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 112 FSE-IRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 112 ~~~-i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
|.. +...+. ..+- |++|..+...+. ....+.+...|.+.|.|+||.|+.+.
T Consensus 77 F~~ev~~~l~-------~aD~alLVVDa~~G~~~qT-~~~l~~a~~~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 77 FGGEVERVLG-------MVDGVLLLVDASEGPMPQT-RFVLKKALELGLKPIVVINKIDRPSA 131 (594)
T ss_pred HHHHHHHHHH-------hCCEEEEEEeCCCCCcHHH-HHHHHHHHHCCCCEEEEEECCCCCCc
Confidence 542 221111 1111 667766654443 23333333467899999999998653
No 220
>PRK10218 GTP-binding protein; Provisional
Probab=94.84 E-value=0.065 Score=63.92 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC--CCccccC---CCccCcceee------hhcccCCcccc----cccccCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR--DFLPRGN---DICTRRPLVL------QLLQTKTDEEY----GEFLHLPGKRFY 110 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~--~flPr~~---g~~TR~Pl~l------~l~~~~~~~~~----~~f~~~pg~~~~ 110 (767)
.+-.|+|||..++|||||+++|++. .|-.... -.....|.|- ..... .-.| -.+++.||. .
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~--~i~~~~~~inliDTPG~--~ 79 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNT--AIKWNDYRINIVDTPGH--A 79 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEE--EEecCCEEEEEEECCCc--c
Confidence 3567999999999999999999853 1211110 0000111110 00000 0012 235677873 3
Q ss_pred ChhHHHHHHHHHHhhhh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 111 DFSEIRREIQAQTDKEA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 111 d~~~i~~~i~~~t~~~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+|.... ..++ ..+- |+++......+. ...++.+...|.+.|.|+||+|+.+.
T Consensus 80 df~~~v-------~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~gip~IVviNKiD~~~a 135 (607)
T PRK10218 80 DFGGEV-------ERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAYGLKPIVVINKVDRPGA 135 (607)
T ss_pred hhHHHH-------HHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHcCCCEEEEEECcCCCCC
Confidence 443221 1111 1111 667766554443 23333444468899999999998743
No 221
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.062 Score=63.28 Aligned_cols=41 Identities=34% Similarity=0.523 Sum_probs=37.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeeh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQ 88 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~ 88 (767)
=.||+-|+-|+|||+|+||+.--+.||-|.|.||-|=+++.
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve 150 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE 150 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec
Confidence 36899999999999999999999999999999999876653
No 222
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=94.76 E-value=0.11 Score=63.41 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G 69 (767)
.+-.|+|||..++|||||+++|+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~ 41 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLA 41 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHH
Confidence 567999999999999999999963
No 223
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=94.75 E-value=0.093 Score=61.66 Aligned_cols=116 Identities=20% Similarity=0.229 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHh---CC-CCcccc----CCCcc-C--cceeehhccc--CC--cccc----cccccCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALV---GR-DFLPRG----NDICT-R--RPLVLQLLQT--KT--DEEY----GEFLHLPG 106 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~---G~-~flPr~----~g~~T-R--~Pl~l~l~~~--~~--~~~~----~~f~~~pg 106 (767)
..-.|++||..++|||||.|+|. |. ...... .+..| . .|+|..-.-+ .. .-.| -.+++.||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 34579999999999999999995 32 111110 01111 0 1111000000 00 0012 23557777
Q ss_pred CcccChhH-HHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 107 KRFYDFSE-IRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 107 ~~~~d~~~-i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
. .||.. +...+. ..+. |+++..++..+ ..++.+.++..|...|.|+||+|+....
T Consensus 89 ~--~df~~~~~~~l~-------~aD~aIlVvDa~~gv~~~-t~~l~~~~~~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 89 H--EDFSEDTYRTLT-------AVDSALMVIDAAKGVEPQ-TRKLMEVCRLRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred c--hhhHHHHHHHHH-------HCCEEEEEEecCCCCCHH-HHHHHHHHHhcCCCEEEEEECCcccccC
Confidence 3 34432 222221 1121 66776666443 2455566666789999999999987533
No 224
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.73 E-value=0.13 Score=54.07 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-.-.|||||+.++||||+|..+++-.|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F 38 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY 38 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC
Confidence 345799999999999999999998877
No 225
>PRK12288 GTPase RsgA; Reviewed
Probab=94.72 E-value=0.023 Score=63.19 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~ 76 (767)
.+|+||.+++|||||||+|.|...+..+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~ 234 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVG 234 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeec
Confidence 3899999999999999999998655443
No 226
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=94.70 E-value=0.026 Score=62.11 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=29.1
Q ss_pred EEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCccee
Q 004228 50 VAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLV 86 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~ 86 (767)
|++||..|+||||++++|++..+ ..+ -..||+.|..
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCcccccee
Confidence 68999999999999999999975 332 2458888864
No 227
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.66 E-value=0.15 Score=58.33 Aligned_cols=56 Identities=23% Similarity=0.173 Sum_probs=37.8
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEE
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 192 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V 192 (767)
|++|.. -+++...|+.+.....-+-.|+||.|-..+|-.+..+..--..|++ |+++
T Consensus 219 Vlda~~---Gq~a~~~a~~F~~~~~~~g~IlTKlD~~argG~aLs~~~~t~~PI~--fig~ 274 (429)
T TIGR01425 219 VMDGSI---GQAAEAQAKAFKDSVDVGSVIITKLDGHAKGGGALSAVAATKSPII--FIGT 274 (429)
T ss_pred Eecccc---ChhHHHHHHHHHhccCCcEEEEECccCCCCccHHhhhHHHHCCCeE--EEcC
Confidence 666653 3567788888876566788999999998888766665543334433 5554
No 228
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.65 E-value=0.024 Score=64.81 Aligned_cols=63 Identities=32% Similarity=0.324 Sum_probs=40.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhH
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE 114 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~ 114 (767)
.-.|-+||=.|+||||+||+|+|.+.+-+. +.|-.+.--.+--.++--...++||-.|-+|.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-----~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-----STPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeee-----cCCCCcceeEEEEcCCCceecCCCCccccCCCc
Confidence 345778999999999999999999875443 334322111110012334456889988877653
No 229
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=94.61 E-value=0.029 Score=62.80 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=37.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCC----ccccC--CCccCcceeehhcccCCcccccccccCCCCcc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDF----LPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~f----lPr~~--g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~ 109 (767)
-.++|||.+|+|||||||+|.+... .+..+ ..+||-+.++.+.. -..+++.||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~------~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD------GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC------CCEEEECCCCCC
Confidence 4899999999999999999998632 22333 25666655544311 123678888543
No 230
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.50 E-value=0.034 Score=55.26 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
..+|++|.+++|||||||+|.+..-+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 6899999999999999999999854444
No 231
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=94.38 E-value=0.042 Score=61.39 Aligned_cols=38 Identities=32% Similarity=0.489 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCccee
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLV 86 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~ 86 (767)
.+|++||-.|+|||||+++|+|.+ ...+. ..||+-|..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~ 41 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNV 41 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceE
Confidence 589999999999999999999997 34443 578988853
No 232
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=94.35 E-value=0.12 Score=58.99 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.|+|+|.-.+|||||+++|+|+
T Consensus 11 ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 11 NIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEccCCCCHHHHHHHhhCe
Confidence 5899999999999999999997
No 233
>PRK00098 GTPase RsgA; Reviewed
Probab=94.34 E-value=0.081 Score=57.62 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=22.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.+++||.+++||||||++|.|...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC
Confidence 699999999999999999999854
No 234
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=94.08 E-value=0.13 Score=61.33 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
--|++||..++|||||+++|+..
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~ 26 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEY 26 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 235
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.08 E-value=0.039 Score=57.65 Aligned_cols=29 Identities=45% Similarity=0.573 Sum_probs=25.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
-++++|.++||||+||+.|.|.+. | .+|.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~-p-t~G~ 61 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK-P-TSGE 61 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC-C-CCce
Confidence 589999999999999999999986 8 5554
No 236
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=94.05 E-value=0.12 Score=64.26 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=29.6
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
|++|...+..+. ..+.+.+...+...|.|+||+|+.
T Consensus 128 Vvda~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 128 VVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred EEECCCCCcccH-HHHHHHHHHCCCCEEEEEECCccc
Confidence 778888876665 466777777899999999999998
No 237
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=93.97 E-value=0.1 Score=56.45 Aligned_cols=121 Identities=19% Similarity=0.270 Sum_probs=59.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCc---cCc--ceeehhcccCCc----ccccccccCCCCcc-cC----hhH
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC---TRR--PLVLQLLQTKTD----EEYGEFLHLPGKRF-YD----FSE 114 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~---TR~--Pl~l~l~~~~~~----~~~~~f~~~pg~~~-~d----~~~ 114 (767)
.|.|||..++||||+|++|.+....+...... ... .+.+.-....-. .---.+++.||.+- .| +..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~ 85 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEP 85 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHH
Confidence 48999999999999999999997766642211 111 122221111000 00123567787542 12 223
Q ss_pred HHHHHHHHHhhhhc-----------CCc------cc-cCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 115 IRREIQAQTDKEAG-----------GNK------VT-PANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 115 i~~~i~~~t~~~~g-----------~n~------V~-~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
|...|+..-+.++. .+. .+ |....+...| ++..+++-. -...|=||.|.|.+...
T Consensus 86 I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D-i~~mk~Ls~-~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 86 IVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD-IEFMKRLSK-RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH-HHHHHHHTT-TSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH-HHHHHHhcc-cccEEeEEecccccCHH
Confidence 44444443332221 011 33 3334455445 367777765 47789999999999744
No 238
>PRK13351 elongation factor G; Reviewed
Probab=93.85 E-value=0.13 Score=62.51 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC--cccc---CC--CccCcceeeh----hcccCCcccc----cccccCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF--LPRG---ND--ICTRRPLVLQ----LLQTKTDEEY----GEFLHLPGKRFY 110 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f--lPr~---~g--~~TR~Pl~l~----l~~~~~~~~~----~~f~~~pg~~~~ 110 (767)
....|+|||..++|||||+++|+...- ...+ .| .+...|.+.. +......-.| -.|++.||. .
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~--~ 84 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH--I 84 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc--H
Confidence 346799999999999999999974210 0111 11 1211121100 0000000112 245677874 2
Q ss_pred ChhHHHHHHHHHHhhhh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 111 DFSEIRREIQAQTDKEA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 111 d~~~i~~~i~~~t~~~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
||.... ...+ ..+. |+++......+ ...+.+.++..+.+.|.|+||.|+...
T Consensus 85 df~~~~-------~~~l~~aD~~ilVvd~~~~~~~~-~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEV-------ERSLRVLDGAVVVFDAVTGVQPQ-TETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHH-------HHHHHhCCEEEEEEeCCCCCCHH-HHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 333211 1111 1121 55665554322 345556666678999999999998753
No 239
>PRK13796 GTPase YqeH; Provisional
Probab=93.70 E-value=0.047 Score=61.19 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=34.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC----Cccc-cC-CCccCcceeehhcccCCcccccccccCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD----FLPR-GN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~----flPr-~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~ 107 (767)
.++|||.+|+|||||||+|.+.. -.+. +. .++||..+.+.+... ..+++.||-
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~------~~l~DTPGi 220 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG------SFLYDTPGI 220 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC------cEEEECCCc
Confidence 69999999999999999998542 1222 11 246776665554221 245677774
No 240
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=93.59 E-value=0.073 Score=57.99 Aligned_cols=24 Identities=42% Similarity=0.565 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-|+|+||-.|+||||||++|+|.+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~ 87 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTK 87 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCC
Confidence 489999999999999999999996
No 241
>PTZ00416 elongation factor 2; Provisional
Probab=93.57 E-value=0.24 Score=61.44 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC-c-cccCCC---ccCcceeehhcccCC----cccc--------------cccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF-L-PRGNDI---CTRRPLVLQLLQTKT----DEEY--------------GEFL 102 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f-l-Pr~~g~---~TR~Pl~l~l~~~~~----~~~~--------------~~f~ 102 (767)
.+--|+|||.-.+|||||+|+|.+..- . ....|. +++.+.|..-..+-. .-.| -.|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 344899999999999999999986321 0 112221 122222211000000 0011 2355
Q ss_pred cCCCCcccChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 103 HLPGKRFYDFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 103 ~~pg~~~~d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
+.||. .||. .+... .....+. |++|...+..++ ..+.+.+...+...|.|+||+|+.
T Consensus 98 DtPG~--~~f~---~~~~~---al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGH--VDFS---SEVTA---ALRVTDGALVVVDCVEGVCVQT-ETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCH--HhHH---HHHHH---HHhcCCeEEEEEECCCCcCccH-HHHHHHHHHcCCCEEEEEEChhhh
Confidence 66663 2222 11111 1111121 778888876665 467777777889999999999997
No 242
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.43 E-value=0.41 Score=54.68 Aligned_cols=65 Identities=22% Similarity=0.144 Sum_probs=41.3
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhh
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 201 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~ 201 (767)
|++|+..- .+..+.++.+...| =+=.|+||.|-...+-.+.+++.....| +-|++.=-+-++|+.
T Consensus 306 Vl~at~~~--~~~~~~~~~f~~~~-~~~~I~TKlDEt~~~G~~l~~~~~~~lP--i~yvt~Gq~VP~Dl~ 370 (420)
T PRK14721 306 LLNATSSG--DTLDEVISAYQGHG-IHGCIITKVDEAASLGIALDAVIRRKLV--LHYVTNGQKVPEDLH 370 (420)
T ss_pred EEcCCCCH--HHHHHHHHHhcCCC-CCEEEEEeeeCCCCccHHHHHHHHhCCC--EEEEECCCCchhhhh
Confidence 77777544 34456666665543 3457899999998877777776554444 557766444445553
No 243
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=93.41 E-value=0.078 Score=57.45 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
..++++|..++||||||++|+|.....
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~ 188 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLA 188 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcc
Confidence 479999999999999999999986533
No 244
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=93.39 E-value=0.14 Score=60.27 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~ 68 (767)
..-.|+|||..++|||||+|+|.
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll 32 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVL 32 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 56689999999999999999984
No 245
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=93.19 E-value=0.13 Score=56.04 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=35.0
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcc
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~P 84 (767)
..+-|-|+|||-.||||||||.+|++-...|+..=..|=.|
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDp 215 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDP 215 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccc
Confidence 57999999999999999999999999998888874444433
No 246
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=93.18 E-value=1.1 Score=54.14 Aligned_cols=225 Identities=21% Similarity=0.263 Sum_probs=126.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccC---cceeehhcccC------C------------ccccccccc
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTR---RPLVLQLLQTK------T------------DEEYGEFLH 103 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR---~Pl~l~l~~~~------~------------~~~~~~f~~ 103 (767)
...+.|.+++.+..+++.+|+.|++.++++.|+...++ .+..+++.... . .++...|..
T Consensus 184 ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~vvnR~q~di~~~k~~~~al~~e~~~f~~ 263 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVGVVNRSQSIIDFKKSILEALNDEVPSFES 263 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceeeeeccchhhhhhhhhHHHHHHhhhhhhhc
Confidence 37788999999999999999999999999999987666 22212111100 0 011112222
Q ss_pred CCCCc-cc------Ch----------------hHHHHHHHHHHhhhhc-CCccccCCCcccccHHHHHHHHhCcCCCceE
Q 004228 104 LPGKR-FY------DF----------------SEIRREIQAQTDKEAG-GNKVTPANSDLANSDALQIAGIADPDGYRTI 159 (767)
Q Consensus 104 ~pg~~-~~------d~----------------~~i~~~i~~~t~~~~g-~n~V~~a~~D~ans~aL~la~~vDP~G~RTI 159 (767)
.|-+. .. .+ +++...|+.....+.. -|..-.++.+.+++.++......++.+-++
T Consensus 264 ~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~g~~~~~~~~~~~ll~~i~~~~~~~~~- 342 (657)
T KOG0446|consen 264 VPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNRIGAVDVDLANSAALLAIIREDPRGLRT- 342 (657)
T ss_pred cccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcccCCccchhhHHHHHHHHHHHHHHH-
Confidence 22110 00 01 0111112211111110 000111678888998888887888888999
Q ss_pred EEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhhcccCHHHHHHHHHHhhccCCCCCCcccccChhHHHHHH
Q 004228 160 GIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKL 239 (767)
Q Consensus 160 GVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~~~~s~~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~L 239 (767)
+|.++.|.+. ..+ +.......+.+..+|..+.++-+.+ .+.+..+-+..... +.. +...-+....+-..|.+..
T Consensus 343 ~v~g~~~~~~-~~e-lsggari~~~F~~~f~~~i~~i~~~--~~~~~~~i~~~i~~-~~G-~~~~lf~p~~afe~lvk~~ 416 (657)
T KOG0446|consen 343 GVIGKLDLVP-TKA-LSGGARINYPFHGGFPGVIKKLPPD--RKLLGQNIEKLVSE-ASG-IRPSLFVPESSFESLVKGQ 416 (657)
T ss_pred hhcccccccc-hhc-ccchhhhhhhhhhccchhhhcCCcc--hhhhHHHHHHHHHh-ccC-CCccccCChHHHHHHHHHH
Confidence 9999999985 322 1111122456667777777666554 22333333222222 222 2222233445555666666
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHH--HHHHcCCCC
Q 004228 240 NQILVQHIKAILPGLKSRISSALVSVAK--EHASYGEIT 276 (767)
Q Consensus 240 s~iL~~hI~~~LP~l~~~I~~~L~~~~~--eL~~lG~~~ 276 (767)
-+.|.+.-.+++-.+.+++...+..+-. ++.+|+.-.
T Consensus 417 i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~l~ 455 (657)
T KOG0446|consen 417 IQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPVLY 455 (657)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHH
Confidence 6666677777777777777777777776 677777543
No 247
>PRK07560 elongation factor EF-2; Reviewed
Probab=93.14 E-value=0.21 Score=61.17 Aligned_cols=114 Identities=12% Similarity=0.184 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCC--CccccCCC---ccCcceee-----------hhccc-CCcccccccccCCCCc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRD--FLPRGNDI---CTRRPLVL-----------QLLQT-KTDEEYGEFLHLPGKR 108 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~--flPr~~g~---~TR~Pl~l-----------~l~~~-~~~~~~~~f~~~pg~~ 108 (767)
..--|+|||...+|||||+|+|.... .-.+..|. ....|.|. .+... ......-.|++.||.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~- 97 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH- 97 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc-
Confidence 56789999999999999999996321 00122221 11111110 00000 000111246788873
Q ss_pred ccChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 109 FYDFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 109 ~~d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
.||.. ++.... ...+. |+++...+..+. ..+++.+...|...|.|+||+|+.
T Consensus 98 -~df~~---~~~~~l---~~~D~avlVvda~~g~~~~t-~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 -VDFGG---DVTRAM---RAVDGAIVVVDAVEGVMPQT-ETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred -cChHH---HHHHHH---HhcCEEEEEEECCCCCCccH-HHHHHHHHHcCCCeEEEEECchhh
Confidence 44431 111111 11111 667776664443 345555555677889999999986
No 248
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.98 E-value=0.091 Score=50.50 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=26.3
Q ss_pred EEEEcCCCCchHHHHHHHhCCCCcccc----CCCccCcce
Q 004228 50 VAVVGSQSSGKSSVLEALVGRDFLPRG----NDICTRRPL 85 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~flPr~----~g~~TR~Pl 85 (767)
|+++|..+||||||++.|.+. +|.. -..+||.|.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~--~~~~~~~~v~~tTr~p~ 39 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE--FDPNFGFSVSHTTRKPR 39 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc--CCccceecccccccCCC
Confidence 789999999999999999986 2322 235678663
No 249
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=92.84 E-value=0.083 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|++||..+|||||++++|++..|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~ 24 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF 24 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999999865
No 250
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=92.84 E-value=0.089 Score=52.83 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++||||++..+.+-.|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~ 25 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF 25 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999876
No 251
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=92.79 E-value=0.076 Score=51.14 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++||||++..+.+-.|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~ 24 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF 24 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999999876
No 252
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=92.66 E-value=0.24 Score=58.79 Aligned_cols=115 Identities=22% Similarity=0.227 Sum_probs=63.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCC-cccChhHHHHHHHHHHhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGK-RFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~-~~~d~~~i~~~i~~~t~~ 125 (767)
.+|++||..|+||||++|+|+|.. .-+|+ -++|=-=-+-.+... ..--+++|+||- .++.++ ..+.+ +.+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~---~~~i~ivDLPG~YSL~~~S-~DE~V---ar~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYK---GHEIEIVDLPGTYSLTAYS-EDEKV---ARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEec---CceEEEEeCCCcCCCCCCC-chHHH---HHH
Confidence 459999999999999999999996 46665 233321111111111 111357899984 222221 11111 111
Q ss_pred hh-cCC-ccccCCCcccccH-HHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 126 EA-GGN-KVTPANSDLANSD-ALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 126 ~~-g~n-~V~~a~~D~ans~-aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+. ..+ .|+-.-.|-+|-+ .|.+.-++=.-|..+|.++|+.|...+
T Consensus 76 ~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~ 123 (653)
T COG0370 76 FLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKK 123 (653)
T ss_pred HHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHh
Confidence 11 111 1222223333432 355555555669999999999998864
No 253
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.58 E-value=0.12 Score=43.30 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-.++.|+.+|||||+|+||.=
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 254
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.58 E-value=0.11 Score=51.46 Aligned_cols=35 Identities=31% Similarity=0.583 Sum_probs=26.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc---cCCCccCcce
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR---GNDICTRRPL 85 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr---~~g~~TR~Pl 85 (767)
-|+|+|..+|||||+++.|.+.. |. ....+||.|.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~--~~~~~~~~~~tr~~~ 40 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED--PNLKFSISATTRKPR 40 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC--ccccccccceeeCCC
Confidence 38999999999999999999862 32 1245677653
No 255
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=92.51 E-value=0.31 Score=47.22 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCcccc
Q 004228 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (767)
Q Consensus 23 ~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~ 76 (767)
..+-.+.+.|.+.+... -...++++||.+++||||++++|.+....+.+
T Consensus 82 ~gi~~L~~~l~~~~~~~-----~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~ 130 (156)
T cd01859 82 LGTKILRRTIKELAKID-----GKEGKVGVVGYPNVGKSSIINALKGRHSASTS 130 (156)
T ss_pred ccHHHHHHHHHHHHhhc-----CCCcEEEEECCCCCCHHHHHHHHhCCCccccC
Confidence 34555666666654311 13467899999999999999999987544433
No 256
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=92.49 E-value=0.11 Score=50.88 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=22.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
+|+|||+.++||||+|..+.+..|.+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~ 27 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ 27 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC
Confidence 68999999999999999877666643
No 257
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=92.36 E-value=0.073 Score=64.99 Aligned_cols=24 Identities=50% Similarity=0.692 Sum_probs=21.6
Q ss_pred EcCCCCchHHHHHHHhCCCCccccC
Q 004228 53 VGSQSSGKSSVLEALVGRDFLPRGN 77 (767)
Q Consensus 53 vG~QSsGKSSvLEal~G~~flPr~~ 77 (767)
.|+||+|||+|||.|.|..| ++.+
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m~ 24 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVMD 24 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cccc
Confidence 49999999999999999997 7754
No 258
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.36 E-value=0.1 Score=49.22 Aligned_cols=23 Identities=52% Similarity=0.697 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++|+|..+||||+||.+|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999999994
No 259
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=92.23 E-value=0.33 Score=55.46 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
-.|++||..++|||||+++|+.
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~ 29 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLY 29 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHH
Confidence 3589999999999999999984
No 260
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.22 E-value=0.11 Score=50.37 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
|.|.|||..+||||+|++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999866
No 261
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.15 E-value=0.11 Score=52.00 Aligned_cols=31 Identities=32% Similarity=0.595 Sum_probs=26.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
-+.+||.++||||+||.+|+++ ++-.+|++|
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 5789999999999999999999 566667544
No 262
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=92.07 E-value=0.13 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++||||++..+.+-.|
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f 26 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 699999999999999999998876
No 263
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=92.05 E-value=0.13 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|++||.++|||||++..+..-.|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~ 25 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI 25 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999976556
No 264
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.02 E-value=0.12 Score=53.54 Aligned_cols=26 Identities=42% Similarity=0.827 Sum_probs=22.7
Q ss_pred CCCCe---EEEEcCCCCchHHHHHHHhCC
Q 004228 45 IELPQ---VAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 45 i~LPq---IvVvG~QSsGKSSvLEal~G~ 70 (767)
+++|+ ++|+|+.+||||++|++|+|-
T Consensus 27 L~I~~g~FvtViGsNGAGKSTlln~iaG~ 55 (263)
T COG1101 27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGD 55 (263)
T ss_pred eeecCCceEEEEcCCCccHHHHHHHhhCc
Confidence 44443 889999999999999999999
No 265
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.02 E-value=0.12 Score=52.23 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=25.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~ 77 (767)
+++|+|.++||||+|||-|.|... |...
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~-P~~G 54 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET-PASG 54 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC-CCCc
Confidence 689999999999999999999974 7765
No 266
>PRK05433 GTP-binding protein LepA; Provisional
Probab=91.97 E-value=0.41 Score=57.27 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHhC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G 69 (767)
+--|++||...+|||||+++|..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~ 29 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIE 29 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999975
No 267
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.96 E-value=0.12 Score=51.90 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- +..+|
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 47 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL--RPQSG 47 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 58899999999999999999984 44444
No 268
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.95 E-value=0.13 Score=52.61 Aligned_cols=28 Identities=36% Similarity=0.412 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+|||||||..|+|.. +..+|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 56 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSG 56 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 47899999999999999999983 44455
No 269
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.94 E-value=0.13 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=22.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|||||+.++||||++..+.+-.|
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f 26 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY 26 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999999877
No 270
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.82 E-value=0.13 Score=52.90 Aligned_cols=28 Identities=43% Similarity=0.558 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||.+|+|.- |-.+|
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G 59 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD--RPTSG 59 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc--CCCce
Confidence 58999999999999999999983 44445
No 271
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=91.81 E-value=0.24 Score=57.07 Aligned_cols=114 Identities=24% Similarity=0.342 Sum_probs=61.2
Q ss_pred CCCCCCeEE-EEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHH
Q 004228 43 STIELPQVA-VVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQA 121 (767)
Q Consensus 43 ~~i~LPqIv-VvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~ 121 (767)
.+...|-|| |||..+.|||+||.+|+.+ | -...----|-|+.+.-... ..-.|+.+| .|+..+.+ +..
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr-~-tk~ti~~i~GPiTvvsgK~----RRiTflEcp----~Dl~~miD-vaK 132 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRR-F-TKQTIDEIRGPITVVSGKT----RRITFLECP----SDLHQMID-VAK 132 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHH-H-HHhhhhccCCceEEeecce----eEEEEEeCh----HHHHHHHh-HHH
Confidence 345677777 9999999999999999876 3 1211111122333222221 223455555 23322211 111
Q ss_pred HHhhhhcCCccccCC--CcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcc
Q 004228 122 QTDKEAGGNKVTPAN--SDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 172 (767)
Q Consensus 122 ~t~~~~g~n~V~~a~--~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gt 172 (767)
-.+-++= .+.+| -.+++.+-|.++.-. .--|.+||+|.+|+-....
T Consensus 133 IaDLVlL---lIdgnfGfEMETmEFLnil~~H--GmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 133 IADLVLL---LIDGNFGFEMETMEFLNILISH--GMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred hhheeEE---EeccccCceehHHHHHHHHhhc--CCCceEEEEeecccccChH
Confidence 1111000 22333 345666767776553 2379999999999986443
No 272
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.77 E-value=0.13 Score=53.64 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||+.|+|.- +-.+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~p~~G 55 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL--RPDSG 55 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 58999999999999999999983 44445
No 273
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=91.74 E-value=0.6 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-|.++|.-..|||||+.||+|+.
T Consensus 36 ~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 36 NIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred EEEEEccCCCCHHHHHHHHhCCC
Confidence 48999999999999999999984
No 274
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=91.73 E-value=0.15 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+-.|+|||+.++||||+|..+++-.|
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~ 31 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST 31 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999998766
No 275
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=91.72 E-value=0.44 Score=54.98 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|++||.-.+|||||+++|.-
T Consensus 9 nv~i~Ghvd~GKSTL~~~Ll~ 29 (446)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIY 29 (446)
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 276
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.69 E-value=0.32 Score=55.02 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=43.6
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhh
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 201 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~ 201 (767)
|++|+. ..+++...++.+..-+ =+=.|+||.|-..++-.+.+++.--..| +.|++.=-+-++||.
T Consensus 357 VLsATt--k~~d~~~i~~~F~~~~-idglI~TKLDET~k~G~iLni~~~~~lP--Isyit~GQ~VPeDI~ 421 (436)
T PRK11889 357 TLSASM--KSKDMIEIITNFKDIH-IDGIVFTKFDETASSGELLKIPAVSSAP--IVLMTDGQDVKKNIH 421 (436)
T ss_pred EECCcc--ChHHHHHHHHHhcCCC-CCEEEEEcccCCCCccHHHHHHHHHCcC--EEEEeCCCCCCcchh
Confidence 555542 3356678888887643 4567999999998887777776554444 557776555556653
No 277
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.68 E-value=0.14 Score=52.70 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|.|.. |..+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 55 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL--PPRSG 55 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58899999999999999999994 43444
No 278
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.66 E-value=0.14 Score=52.67 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||+.|+|.. |-.+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 57 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL--RPTSG 57 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 48899999999999999999984 44445
No 279
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.65 E-value=0.15 Score=51.76 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=27.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC-CccccCCCccCcce
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRPL 85 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~-flPr~~g~~TR~Pl 85 (767)
-|+++|.++||||+|+..|.+.- .+...-..+||.|.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~ 44 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPR 44 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCC
Confidence 48999999999999999999872 11233346777763
No 280
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.65 E-value=0.14 Score=52.38 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|. ++..+|
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G 54 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL--TPPSSG 54 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC--CCCCcc
Confidence 7899999999999999999998 344455
No 281
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.60 E-value=0.14 Score=49.49 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=23.4
Q ss_pred EEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
++++|..++|||++++.|+|.. |-.+|.
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~--~~~~G~ 56 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGEL--EPDEGI 56 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCCC--CCCceE
Confidence 5799999999999999999984 445553
No 282
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.59 E-value=0.14 Score=53.02 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- |-.+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G 55 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV--KPDSG 55 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58899999999999999999984 44445
No 283
>COG2229 Predicted GTPase [General function prediction only]
Probab=91.59 E-value=0.97 Score=45.68 Aligned_cols=124 Identities=18% Similarity=0.264 Sum_probs=68.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCC------CccCcceeehhcccCCcccc--c-ccccCCCCcccChhHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND------ICTRRPLVLQLLQTKTDEEY--G-EFLHLPGKRFYDFSEI 115 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g------~~TR~Pl~l~l~~~~~~~~~--~-~f~~~pg~~~~d~~~i 115 (767)
+.-+.|||+|.+++||++++++|+-.. ++...+ .-+.+|+.+-+--.+-...| + .+...||..-.+|
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f--- 83 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF--- 83 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccc-cceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH---
Confidence 456799999999999999999999885 333322 11233444433322111111 1 1224555321111
Q ss_pred HHHHHHHHhhhh-cCCc---cccCCCcccccHHHHHHHHhCcCC-CceEEEeeccCCCCCcc--cHHHHHc
Q 004228 116 RREIQAQTDKEA-GGNK---VTPANSDLANSDALQIAGIADPDG-YRTIGIITKLDIMDRGT--DARNLLL 179 (767)
Q Consensus 116 ~~~i~~~t~~~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G-~RTIGVlTK~Dl~d~gt--d~~~iL~ 179 (767)
.| +.+. |... +++++.+. +..|..+...+.-.. .+.+..+||-|+-+.-. +.+++|.
T Consensus 84 --m~----~~l~~ga~gaivlVDss~~~-~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~ 147 (187)
T COG2229 84 --MW----EILSRGAVGAIVLVDSSRPI-TFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALK 147 (187)
T ss_pred --HH----HHHhCCcceEEEEEecCCCc-chHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHH
Confidence 11 1111 2121 44444443 336777776666555 88999999999987433 3455553
No 284
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=91.58 E-value=0.46 Score=48.69 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=18.0
Q ss_pred EcCCCCchHHHHHHHhCCCC
Q 004228 53 VGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 53 vG~QSsGKSSvLEal~G~~f 72 (767)
||+.++||||||+.+++-.|
T Consensus 1 vG~~~vGKTsLi~r~~~~~f 20 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF 20 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC
Confidence 69999999999999997665
No 285
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.57 E-value=0.14 Score=51.75 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=24.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~ 80 (767)
-|+|+|..+||||+++.+|+|. +|...+++
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~--i~~~~~~i 56 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF--IPPDERII 56 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh--cCCCCCEE
Confidence 4899999999999999999997 45555543
No 286
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.53 E-value=0.15 Score=52.44 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- |-.+|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 60 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL--EPDAG 60 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCCc
Confidence 37799999999999999999983 44444
No 287
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.47 E-value=0.13 Score=59.75 Aligned_cols=27 Identities=22% Similarity=0.610 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
=+||+||++++||||||-||++-.|.|
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~ 36 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVD 36 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccc
Confidence 489999999999999999999998743
No 288
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.43 E-value=0.16 Score=49.50 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=26.3
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
..++++|..++|||++|++|+|.- +...|.+|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~ 57 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEIL 57 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEEE
Confidence 368899999999999999999983 55666544
No 289
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.40 E-value=0.15 Score=52.09 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=24.7
Q ss_pred CCCCe-EEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 45 IELPQ-VAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 45 i~LPq-IvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
+.--+ ++++|..+||||+||..|+|.- |-.+|
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII--LPDSG 55 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 44444 6799999999999999999983 43444
No 290
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.34 E-value=0.16 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||..|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999984
No 291
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.32 E-value=0.13 Score=50.43 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
+|||+|..|+|||+|+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999855
No 292
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.32 E-value=0.16 Score=50.81 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||..|+|.. +-.+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 56 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR--PPASGE 56 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 68999999999999999999994 444553
No 293
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.30 E-value=0.46 Score=57.87 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=40.9
Q ss_pred cccCCCcccccHHHHHHHHhCcCC--CceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhh
Q 004228 132 VTPANSDLANSDALQIAGIADPDG--YRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 201 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G--~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~ 201 (767)
|++|+.. ..+..++++.+.... .=+=.|+||.|-..++-.+.+++.....| +-|++.=-+-++||.
T Consensus 300 VLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~lP--I~yit~GQ~VPdDL~ 367 (767)
T PRK14723 300 LLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLP--VHYVSTGQKVPEHLE 367 (767)
T ss_pred EECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHHCCC--eEEEecCCCChhhcc
Confidence 6676642 223334666654321 23557899999998887788877655455 557777555556654
No 294
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=91.30 E-value=0.17 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.+|++||++++||||++..+..-.|.
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~ 43 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV 43 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc
Confidence 48999999999999999999755563
No 295
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.27 E-value=0.16 Score=51.78 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+|||||||..|+|.. +-.+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 55 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI--KESSG 55 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCce
Confidence 58899999999999999999984 44445
No 296
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.26 E-value=0.15 Score=53.07 Aligned_cols=28 Identities=43% Similarity=0.578 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- +-.+|
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G 64 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD--TPTSG 64 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCce
Confidence 57899999999999999999983 44445
No 297
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=91.23 E-value=0.18 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=23.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|+|||+.++|||||+..+.+-.|.
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~f~ 31 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCFP 31 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 7999999999999999999998773
No 298
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.16 E-value=0.17 Score=51.28 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||+.|+|.. |-.+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 55 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM--QPSSG 55 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 67899999999999999999984 44444
No 299
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.15 E-value=0.16 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+|||||||..|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999983
No 300
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.15 E-value=0.17 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||+|.+|+|.-
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999994
No 301
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.14 E-value=0.16 Score=52.27 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+|||||||..|+|.. +..+|
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 59 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE--RPTSG 59 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 47899999999999999999984 33444
No 302
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.12 E-value=0.16 Score=53.01 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||.+|+|.. |-.+|
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G 57 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV--EPSSG 57 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCcc
Confidence 68899999999999999999984 43444
No 303
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=91.12 E-value=0.18 Score=52.51 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=22.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++||||+++.+.+-.|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f 25 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF 25 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 589999999999999999999987
No 304
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.09 E-value=0.17 Score=51.88 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. +-.+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~p~~G 55 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE--RPDSG 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCe
Confidence 47899999999999999999983 44445
No 305
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.04 E-value=0.17 Score=52.16 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=23.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- |-.+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 55 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL--KPTSG 55 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 36899999999999999999983 33444
No 306
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.00 E-value=0.56 Score=50.51 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=41.4
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhh
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 200 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di 200 (767)
|++|+.. .+++.+.++.+.+-+ =+=.|+||.|-..++-.+.+++..-..| .-|++.=-+=++|+
T Consensus 191 Vl~a~~~--~~d~~~~~~~f~~~~-~~~~I~TKlDet~~~G~~l~~~~~~~~P--i~~it~Gq~vp~di 254 (270)
T PRK06731 191 TLSASMK--SKDMIEIITNFKDIH-IDGIVFTKFDETASSGELLKIPAVSSAP--IVLMTDGQDVKKNI 254 (270)
T ss_pred EEcCccC--HHHHHHHHHHhCCCC-CCEEEEEeecCCCCccHHHHHHHHHCcC--EEEEeCCCCCCcch
Confidence 5666532 256678888887643 3556899999998887777766543344 45766644444554
No 307
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.00 E-value=0.18 Score=52.61 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+|||||||..|+|.- +-.+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 56 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV--EPTSG 56 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCCc
Confidence 58999999999999999999984 44444
No 308
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.97 E-value=0.17 Score=50.92 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||+.|+|.- +-.+|.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~ 55 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL--IPNGDN 55 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC--CCCCcE
Confidence 68899999999999999999984 444453
No 309
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=90.94 E-value=0.2 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=22.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++||||+|..+++-.|
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f 26 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAF 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999998766
No 310
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=90.92 E-value=0.12 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-++++|..+||||+||++|.|.
T Consensus 23 g~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999877
No 311
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=90.91 E-value=0.24 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++||||||..|.+-.|
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999986555
No 312
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=90.90 E-value=0.18 Score=53.79 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||+.|+|.- |-.+|.
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G~ 69 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI--EPTSGE 69 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCCE
Confidence 57899999999999999999993 445553
No 313
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.90 E-value=0.17 Score=51.66 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=23.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- |-.+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 56 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE--LPTSG 56 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCce
Confidence 47899999999999999999983 44444
No 314
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=90.89 E-value=0.18 Score=51.39 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~ 80 (767)
.++|+|..++|||+||.+|+|.. +..+|.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i 65 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEGKI 65 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCeE
Confidence 58899999999999999999983 5555643
No 315
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.87 E-value=0.19 Score=49.91 Aligned_cols=28 Identities=14% Similarity=0.391 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..++|||+||..|+|.. |-.+|
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~--~~~~G 55 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL--KPDSG 55 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCe
Confidence 58899999999999999999984 44445
No 316
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.86 E-value=0.19 Score=51.15 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..++|||++|+.|+|.. +..+|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G 56 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL--NPEKG 56 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCe
Confidence 68899999999999999999984 44444
No 317
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.82 E-value=0.2 Score=51.62 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
-++++|..+||||+||..|+|.. |-.+|-++
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i~ 45 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDFI 45 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCEE
Confidence 36799999999999999999994 44556443
No 318
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=90.81 E-value=0.19 Score=51.26 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. |..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 55 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE--EPDSG 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999983 44455
No 319
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.81 E-value=0.19 Score=52.00 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++|+|..++|||+||++|+|.- |-.+|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 59 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKGQ 59 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCCE
Confidence 47899999999999999999984 444553
No 320
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.77 E-value=0.2 Score=52.10 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- |-.+|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 60 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE--RPTSG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68899999999999999999994 44445
No 321
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.74 E-value=0.2 Score=50.07 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||.+|+|. +|..+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~ 56 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL--EEPDSGS 56 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCceE
Confidence 5779999999999999999998 3555553
No 322
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.70 E-value=0.2 Score=49.37 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..++|||+||..|.|.. |-.+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G 55 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY--KPDSG 55 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCe
Confidence 57799999999999999999994 44445
No 323
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.68 E-value=0.76 Score=53.40 Aligned_cols=65 Identities=25% Similarity=0.221 Sum_probs=42.6
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhh
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 201 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~ 201 (767)
|+++..+. .+..+.++.+...+ .+-.|+||+|-..++-.+.+++.....| +-|+++=-+-++||.
T Consensus 371 VLdAt~~~--~~l~~i~~~f~~~~-~~g~IlTKlDet~~~G~~l~i~~~~~lP--I~yvt~GQ~VPeDL~ 435 (484)
T PRK06995 371 LLNATSHG--DTLNEVVQAYRGPG-LAGCILTKLDEAASLGGALDVVIRYKLP--LHYVSNGQRVPEDLH 435 (484)
T ss_pred EEeCCCcH--HHHHHHHHHhccCC-CCEEEEeCCCCcccchHHHHHHHHHCCC--eEEEecCCCChhhhc
Confidence 55565444 33445677776654 5677899999888877777777654455 557777555555653
No 324
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.68 E-value=0.19 Score=52.38 Aligned_cols=29 Identities=34% Similarity=0.334 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||.+|+|.- |-.+|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~ 59 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY--DPTSGE 59 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC--CCCCCE
Confidence 57999999999999999999983 444553
No 325
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=90.66 E-value=0.2 Score=52.40 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|.|.. |..+|
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 58 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV--PRDAG 58 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 57899999999999999999983 44455
No 326
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=90.66 E-value=0.19 Score=52.21 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- |..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G 55 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL--RPTSG 55 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCCc
Confidence 57899999999999999999983 44455
No 327
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=90.61 E-value=0.21 Score=50.89 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..++|||+||+.|.|.- |-.+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS--PPLAG 55 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58899999999999999999983 54555
No 328
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.55 E-value=0.2 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999983
No 329
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=90.55 E-value=0.2 Score=52.45 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||+.|+|.. +..+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE--MPRSG 57 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 57899999999999999999984 44444
No 330
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.52 E-value=0.21 Score=49.61 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..++|||+||..|+|.. |..+|.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~--~~~~G~ 58 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL--RPTSGR 58 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc--CCCCCe
Confidence 57899999999999999999984 444553
No 331
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=90.47 E-value=0.21 Score=51.45 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- |-.+|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 60 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL--KPTSG 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 69999999999999999999983 44445
No 332
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.45 E-value=0.21 Score=50.98 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. |..+|
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~--~~~~G 53 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE--TPQSG 53 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999994 44455
No 333
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=90.45 E-value=0.2 Score=54.72 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+|++.|+|.- |-.+|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~--~p~~G~ 63 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL--LPDTGT 63 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC--CCCCcE
Confidence 59999999999999999999983 445553
No 334
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=90.45 E-value=0.22 Score=51.22 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
-++++|..+||||+||..|+|.. |..+|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~ 60 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY--KPTSGS 60 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCCe
Confidence 47899999999999999999984 444553
No 335
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=90.43 E-value=1.4 Score=48.67 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=27.4
Q ss_pred EEEEcCCCCchHHHHHHHhCCCCccccCC--CccCcce
Q 004228 50 VAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPL 85 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~flPr~~g--~~TR~Pl 85 (767)
|-.||=.||||||||.+++.-+ |+-.. -+|-.|-
T Consensus 162 VGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~Pn 197 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPN 197 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcC--CcccCCccccccCc
Confidence 3468999999999999999985 77664 6777773
No 336
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.42 E-value=0.22 Score=53.07 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
.++++|.++||||+||+.|+|.. +-.+|.++
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~--~p~~G~I~ 58 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKL--KPNLGKFD 58 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCCceEe
Confidence 69999999999999999999993 55566443
No 337
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.38 E-value=0.22 Score=52.26 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 58 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI--DPTEG 58 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 57899999999999999999983 44455
No 338
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=90.38 E-value=0.21 Score=50.92 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.. |-.+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 55 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI--KPDSG 55 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCce
Confidence 47899999999999999999983 44444
No 339
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=90.38 E-value=0.22 Score=51.01 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|.-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999983
No 340
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.36 E-value=0.21 Score=51.85 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++|+|..+||||+||..|+|.. |-.+|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G 56 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY--DVSSG 56 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCC
Confidence 57899999999999999999984 44555
No 341
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=90.35 E-value=0.22 Score=51.20 Aligned_cols=28 Identities=46% Similarity=0.577 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 60 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD--NPTSG 60 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 67899999999999999999984 43444
No 342
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.34 E-value=0.21 Score=53.95 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||+.|+|.- |-.+|.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~--~p~~G~ 63 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALL--KPSSGT 63 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCcE
Confidence 57899999999999999999983 555553
No 343
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=90.34 E-value=0.21 Score=52.11 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. |-.+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~--~p~~G 56 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY--VAQEG 56 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCce
Confidence 57799999999999999999994 43444
No 344
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=90.32 E-value=0.19 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999999983
No 345
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=90.29 E-value=0.23 Score=50.52 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..++|||+||+.|.|...++-.+|
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~p~~G 57 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEG 57 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCcc
Confidence 678999999999999999999842233444
No 346
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=90.28 E-value=0.24 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 347
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=90.28 E-value=0.22 Score=50.92 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- |-.+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 55 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE--EPTSG 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 47899999999999999999983 43444
No 348
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.26 E-value=0.24 Score=49.13 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=24.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..++|||+||..|+|.- |-.+|.
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~--~~~~G~ 58 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY--DPTSGE 58 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCCE
Confidence 68999999999999999999984 444553
No 349
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.23 E-value=0.22 Score=51.91 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..++|||+||+.|.|.- |...|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~--~~~~G~ 56 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFE--TPTSGE 56 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceE
Confidence 68899999999999999999994 444453
No 350
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=90.22 E-value=0.24 Score=51.18 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||+.|+|.- +-.+|
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G 63 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANY--LPDSG 63 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCC
Confidence 68899999999999999999983 43444
No 351
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=90.18 E-value=0.25 Score=48.90 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++|+|..+||||+||..|.|.- +-.+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 57 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW--PWGSGR 57 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCce
Confidence 57999999999999999999983 445553
No 352
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=90.17 E-value=0.23 Score=52.31 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. |-.+|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 58 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL--APDHG 58 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 57999999999999999999983 44455
No 353
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.10 E-value=0.24 Score=51.36 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- |-.+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 55 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL--PVKSG 55 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCC
Confidence 58999999999999999999984 43444
No 354
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.09 E-value=0.23 Score=51.06 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..++|||+||+.|+|.- |..+|.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~ 67 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESGQ 67 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCee
Confidence 57799999999999999999983 555553
No 355
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=90.07 E-value=0.24 Score=52.58 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. +-.+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 56 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV--PYQHG 56 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 48899999999999999999984 44444
No 356
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.07 E-value=0.23 Score=53.46 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++|+|..++|||+||..|+|.- +-.+|
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~--~p~~G 62 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLL--LPEAG 62 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCCc
Confidence 47899999999999999999994 44555
No 357
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=90.04 E-value=0.24 Score=51.30 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- +-.+|
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~--~p~~G 65 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD--DGSSG 65 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCe
Confidence 68999999999999999999983 43444
No 358
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=90.01 E-value=0.24 Score=51.85 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||+.|+|. +|..+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~ 56 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGL--EQPDSGR 56 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCceE
Confidence 5789999999999999999998 3555553
No 359
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=89.90 E-value=0.26 Score=51.83 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|...++..+|
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G 64 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGHPAYKILEG 64 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCcCCCc
Confidence 577999999999999999999732333344
No 360
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.89 E-value=0.26 Score=50.45 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..++|||+||+.|+|.. +-.+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL--PPAAG 57 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 57899999999999999999984 44445
No 361
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.89 E-value=0.23 Score=50.74 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||+.|+|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 68899999999999999999994
No 362
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=89.88 E-value=0.26 Score=51.35 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.. +-.+|
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 40 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA--QPTSG 40 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999994 44444
No 363
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.87 E-value=0.24 Score=52.95 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++|+|..+|||||||..|+|.- |-.+|
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G 64 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLL--KPQSG 64 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 57799999999999999999994 44444
No 364
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.84 E-value=0.26 Score=50.12 Aligned_cols=28 Identities=46% Similarity=0.584 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..++||||||+.|+|.. +-.+|
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~--~~~~G 60 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGEL--EKLSG 60 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC--CCCCC
Confidence 57899999999999999999984 44555
No 365
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.84 E-value=0.26 Score=51.63 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..++|||+||..|+|.. |..+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 56 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI--EPTSG 56 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 47799999999999999999983 44555
No 366
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=89.81 E-value=0.27 Score=49.15 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..++|||+||..|+|.. |-.+|.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~--~~~~G~ 55 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL--KPSSGE 55 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcE
Confidence 57899999999999999999984 445553
No 367
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.81 E-value=0.25 Score=53.30 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||..|+|.- |-.+|.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~ 67 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLI--ISETGQ 67 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCce
Confidence 58899999999999999999983 444553
No 368
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=89.79 E-value=0.28 Score=49.41 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-.|+|||+.++||||++..++.-.|
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f 28 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF 28 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC
Confidence 3799999999999999999998776
No 369
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.78 E-value=0.25 Score=53.48 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||+.|+|.- +..+|
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~--~p~~G 61 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLL--QPTEG 61 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCC--CCCCc
Confidence 58999999999999999999984 44555
No 370
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.75 E-value=0.28 Score=49.68 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=24.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
-++++|..+||||+||..|.|....+..+|.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~ 65 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGE 65 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Confidence 5789999999999999999998433344553
No 371
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=89.74 E-value=0.25 Score=50.95 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..++|||+||+.|+|.- |-.+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGIL--RPTSG 55 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 57899999999999999999983 44445
No 372
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.73 E-value=0.27 Score=50.12 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. |-.+|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~p~~G 56 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA--RPDAG 56 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68999999999999999999984 43444
No 373
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.72 E-value=0.26 Score=51.18 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- |-.+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 57 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY--DVDSG 57 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--cCCCC
Confidence 47899999999999999999994 44455
No 374
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.70 E-value=0.28 Score=51.89 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~ 76 (767)
-+++||.+++|||+||+.|.|... |-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 388999999999999999999964 443
No 375
>PRK10908 cell division protein FtsE; Provisional
Probab=89.70 E-value=0.25 Score=50.90 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. |-.+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE--RPSAG 57 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 47899999999999999999984 44455
No 376
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=89.68 E-value=0.26 Score=51.26 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||+.|+|.- |-.+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 57 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFY--VPENG 57 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCC
Confidence 58999999999999999999994 44444
No 377
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.67 E-value=0.28 Score=50.35 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-.++++|..+||||+||..|.|.- +-.+|
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 52 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE--KPDGG 52 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 567999999999999999999983 44444
No 378
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=89.66 E-value=0.26 Score=52.53 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. |-.+|
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 62 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLM--TPAHG 62 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCCc
Confidence 68999999999999999999983 44445
No 379
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=89.65 E-value=0.27 Score=50.45 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||++|.+|+|.- +..+|
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 53 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFI--EPASG 53 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 58899999999999999999983 55555
No 380
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=89.57 E-value=0.28 Score=50.92 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++|+|..+||||+||..|+|.. |-.+|
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 62 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI--SPTSG 62 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCC
Confidence 57899999999999999999983 44444
No 381
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.55 E-value=0.29 Score=48.80 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++|+|..++|||+||+.|.|.. |-.+|
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~--~~~~G 57 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL--KPQQG 57 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC--CCCCC
Confidence 47799999999999999999994 44455
No 382
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=89.54 E-value=0.26 Score=51.16 Aligned_cols=28 Identities=29% Similarity=0.601 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~--~p~~G 77 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIY--PPDSG 77 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 58899999999999999999983 43444
No 383
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.53 E-value=0.27 Score=52.61 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- |-.+|
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~--~p~~G 79 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLI--EPTSG 79 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCe
Confidence 58899999999999999999984 44444
No 384
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.48 E-value=0.26 Score=52.85 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||+.|+|.- +..+|.
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G~ 60 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGIL--KPTSGS 60 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceE
Confidence 46899999999999999999983 444553
No 385
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.46 E-value=0.27 Score=52.53 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 56 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL--RPQKG 56 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCcc
Confidence 58899999999999999999983 44455
No 386
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=89.45 E-value=0.28 Score=53.06 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=24.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~ 80 (767)
.++|+|..+||||+||..|.|.- |-.+|.+
T Consensus 65 ~~~liG~NGsGKSTLl~~I~Gl~--~p~~G~I 94 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGEL--EPSEGKI 94 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 47899999999999999999983 5555643
No 387
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=89.43 E-value=0.27 Score=52.37 Aligned_cols=29 Identities=38% Similarity=0.501 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+|||||||..|+|.- +-.+|.
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~--~p~~G~ 68 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE--TPSAGE 68 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCeE
Confidence 58899999999999999999984 444453
No 388
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.39 E-value=0.28 Score=51.30 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +..+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 57 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE--RPDSG 57 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 47899999999999999999984 43444
No 389
>COG3910 Predicted ATPase [General function prediction only]
Probab=89.38 E-value=0.37 Score=49.09 Aligned_cols=46 Identities=33% Similarity=0.615 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHh-CCCCccccCC
Q 004228 26 IPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALV-GRDFLPRGND 78 (767)
Q Consensus 26 i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~-G~~flPr~~g 78 (767)
+|++..|+. .| .+.-|--+++|..++|||+|||||. |..|.+-|.+
T Consensus 23 lPa~r~l~~---~L----eF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~ 69 (233)
T COG3910 23 LPAFRHLEE---RL----EFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGG 69 (233)
T ss_pred chHHHhhhh---hc----cccCceEEEEcCCCccHHHHHHHHHhhccccccCCC
Confidence 467777774 12 4788999999999999999999994 4455565543
No 390
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=89.36 E-value=0.28 Score=52.74 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
-++++|..+||||+||.+|+|.- |..+|.
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~ 66 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALL--IPSEGK 66 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 47899999999999999999994 445553
No 391
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=89.33 E-value=0.33 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 392
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.31 E-value=0.28 Score=52.57 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=24.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||..|+|. +|..+|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~ 58 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNGI--LKPTSGE 58 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCccE
Confidence 6899999999999999999998 4555553
No 393
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.30 E-value=0.28 Score=52.36 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +..+|
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~--~~~~G 64 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIE--KVKSG 64 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCce
Confidence 57899999999999999999993 44455
No 394
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.27 E-value=0.28 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=20.6
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHh
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~ 68 (767)
.+..-.+||+|+||+||+|+|.-..
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~ 43 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFM 43 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHH
Confidence 3455689999999999999997553
No 395
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.22 E-value=0.31 Score=52.04 Aligned_cols=32 Identities=31% Similarity=0.633 Sum_probs=25.4
Q ss_pred CCCCe---EEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 45 IELPQ---VAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 45 i~LPq---IvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
+++|. ++++|..+|||||||.+|+|. ++-.+|
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~--l~p~~G 57 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGL--LKPKSG 57 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCC
Confidence 45554 889999999999999999998 344444
No 396
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.21 E-value=1.2 Score=49.04 Aligned_cols=56 Identities=25% Similarity=0.167 Sum_probs=36.5
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEE
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 192 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V 192 (767)
|++|+. .++++.-++.+...-.-+-.|+||.|-..++-.+.+++.-- .+..-|+++
T Consensus 239 Vl~a~~---g~~~~~~a~~f~~~~~~~giIlTKlD~t~~~G~~l~~~~~~--~~Pi~~v~~ 294 (318)
T PRK10416 239 VLDATT---GQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADEL--GIPIKFIGV 294 (318)
T ss_pred EEECCC---ChHHHHHHHHHHhhCCCCEEEEECCCCCCCccHHHHHHHHH--CCCEEEEeC
Confidence 666663 45566667776544456678999999887777776666332 333556664
No 397
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=89.20 E-value=0.3 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|..
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999984
No 398
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.20 E-value=0.31 Score=50.92 Aligned_cols=28 Identities=14% Similarity=0.516 Sum_probs=23.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..++|||+||..|+|.- +-.+|
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~--~p~~G 57 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKT--RPDEG 57 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCC
Confidence 46899999999999999999984 33444
No 399
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=89.18 E-value=0.3 Score=52.03 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 66 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLE--KPAQG 66 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68899999999999999999984 44444
No 400
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.17 E-value=0.31 Score=50.15 Aligned_cols=28 Identities=39% Similarity=0.444 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.. +..+|
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 59 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLV--ELSSG 59 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCC
Confidence 57899999999999999999984 44445
No 401
>PRK14738 gmk guanylate kinase; Provisional
Probab=89.13 E-value=0.38 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|||+|.++||||||++.|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 3667899999999999999754
No 402
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=89.13 E-value=0.3 Score=51.17 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|...++..+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G 58 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGREDYEVTGG 58 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCccCCCCce
Confidence 579999999999999999999832233444
No 403
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.11 E-value=0.33 Score=51.40 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+|||||||..|+|.- +-.+|.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~--~p~~G~ 55 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL--KPDEGD 55 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--cCCCCe
Confidence 47899999999999999999984 444453
No 404
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=89.09 E-value=0.3 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||.+|+|.-
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999999983
No 405
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.08 E-value=0.41 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-||++|.++||||||++.|...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999765
No 406
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=89.07 E-value=0.31 Score=50.79 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||.+|+|.- |-.+|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~--~p~~G 60 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDP--RATSG 60 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCCc
Confidence 57799999999999999999984 44444
No 407
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=89.05 E-value=0.3 Score=51.66 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++|+|..++|||+||..|.|.- |-.+|
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G 60 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLE--KPSEG 60 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCe
Confidence 45799999999999999999984 44445
No 408
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=89.03 E-value=0.3 Score=51.25 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 58 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE--QPEAG 58 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCe
Confidence 47799999999999999999983 44444
No 409
>COG1162 Predicted GTPases [General function prediction only]
Probab=88.99 E-value=0.24 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|++|.+++|||||||+|.+-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5789999999999999999874
No 410
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=88.98 E-value=0.32 Score=51.43 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..++|||+||..|+|.- |-.+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 56 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGAL--RPDAG 56 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCCC
Confidence 46799999999999999999983 44445
No 411
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=88.97 E-value=0.31 Score=51.32 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- |-.+|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G 60 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFY--KPTGG 60 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCcc
Confidence 57899999999999999999984 44445
No 412
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=88.94 E-value=0.31 Score=50.32 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..++|||+||.+|+|.- |-.+|
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 69 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFY--QPQGG 69 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCc
Confidence 57999999999999999999983 44444
No 413
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=88.93 E-value=0.33 Score=51.42 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 61 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARL--APDAG 61 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCC
Confidence 68999999999999999999984 33444
No 414
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=88.90 E-value=0.31 Score=52.15 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++|+|..+||||+||..|+|.- |..+|.
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl~--~p~~G~ 80 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSL--SPTVGK 80 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCceE
Confidence 57899999999999999999983 555554
No 415
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=88.87 E-value=1.4 Score=56.87 Aligned_cols=32 Identities=34% Similarity=0.623 Sum_probs=28.4
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCCCCccccC
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~ 77 (767)
-..||=.+|||.++|||||+|..- |..| |-..
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~ 139 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAE 139 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC-CCCC-cCch
Confidence 459999999999999999999998 8886 7764
No 416
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.84 E-value=0.31 Score=52.25 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 60 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIY--LPQRG 60 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCce
Confidence 58999999999999999999983 44455
No 417
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=88.82 E-value=0.33 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.++..-.++||..+||||++|+||.+.
T Consensus 22 ~~~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 22 GFDPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999987
No 418
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.80 E-value=0.31 Score=54.29 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=26.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
-|+|+|..+||||+++++|++. +|....++|
T Consensus 164 nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 4999999999999999999987 477666555
No 419
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=88.74 E-value=0.33 Score=50.07 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..++|||+||..|+|. +|..+|
T Consensus 33 ~~~I~G~nGsGKStLl~~l~G~--~~~~~G 60 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGGL--RSVQEG 60 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCe
Confidence 6899999999999999999998 355555
No 420
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.74 E-value=0.33 Score=52.37 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=24.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||..|+|. +|..+|.
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl--~~p~~G~ 62 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGI--LKPSSGR 62 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCccE
Confidence 6899999999999999999998 3555563
No 421
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=88.65 E-value=0.33 Score=51.11 Aligned_cols=28 Identities=36% Similarity=0.637 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. +-.+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLE--PIDEG 55 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 57899999999999999999984 33444
No 422
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.64 E-value=0.34 Score=53.33 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+||||+||..|+|.- +..+|.
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~--~p~~G~ 82 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLI--KSKYGT 82 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCCe
Confidence 59999999999999999999984 445553
No 423
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=88.60 E-value=0.4 Score=49.33 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||..|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999994
No 424
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.58 E-value=0.76 Score=50.09 Aligned_cols=59 Identities=19% Similarity=0.446 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceee
Q 004228 25 VIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVL 87 (767)
Q Consensus 25 ~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l 87 (767)
.-.++++|.+++. .....-.|-+.+||+.+.|||++++..... +-|...+..+++|+..
T Consensus 42 A~~~L~~L~~Ll~---~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~-hp~~~d~~~~~~PVv~ 100 (302)
T PF05621_consen 42 AKEALDRLEELLE---YPKRHRMPNLLIVGDSNNGKTMIIERFRRL-HPPQSDEDAERIPVVY 100 (302)
T ss_pred HHHHHHHHHHHHh---CCcccCCCceEEecCCCCcHHHHHHHHHHH-CCCCCCCCCccccEEE
Confidence 4567888888765 235678899999999999999999999876 4344445567788654
No 425
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=88.49 E-value=0.36 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|.-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999994
No 426
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.48 E-value=0.34 Score=52.33 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~--~p~~G 62 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLL--KPTSG 62 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCcc
Confidence 59999999999999999999983 44445
No 427
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=88.42 E-value=0.35 Score=50.50 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- +-.+|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 56 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLE--EITSG 56 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 57799999999999999999983 44444
No 428
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.38 E-value=0.34 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+|||||||..|+|.-
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999984
No 429
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.37 E-value=0.41 Score=50.35 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.|++||.++||||+||.+|.|. .+..+|
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl--~d~t~G 59 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGL--VDPTSG 59 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcc--cCCCcc
Confidence 4899999999999999999995 355554
No 430
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=88.36 E-value=0.35 Score=51.71 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|.-
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999983
No 431
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=88.28 E-value=0.34 Score=49.21 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=25.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCccCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRR 83 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~ 83 (767)
-||+.|.+++|||||+.+|....-+-..-..+||-
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~ 40 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRK 40 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCC
Confidence 37999999999999999998775222222345663
No 432
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.14 E-value=0.46 Score=49.42 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=22.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.+|+||.++||||++|.+|-|..-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 588999999999999999999873
No 433
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=88.09 E-value=0.4 Score=50.91 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||..|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999983
No 434
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=88.06 E-value=0.4 Score=49.82 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.. +..+|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G 54 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFL--TPASG 54 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 57799999999999999999994 44444
No 435
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=88.06 E-value=0.4 Score=50.69 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|. ++..+|
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G 57 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARL--LTPQSG 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCCc
Confidence 3789999999999999999998 344455
No 436
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=88.03 E-value=0.38 Score=51.66 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||.+|.|.-
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999983
No 437
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=88.03 E-value=0.38 Score=51.01 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl~--~p~~G 59 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLV--APDEG 59 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 48999999999999999999983 44445
No 438
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=87.91 E-value=0.38 Score=47.77 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~ 68 (767)
+.|-|+|+|..+||||++.+.|+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999998
No 439
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.91 E-value=0.4 Score=51.73 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~--~p~~G 62 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALL--KPTTG 62 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 47999999999999999999984 44444
No 440
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.89 E-value=0.43 Score=49.53 Aligned_cols=27 Identities=37% Similarity=0.708 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~ 76 (767)
..+++|..+||||++|.+|+|. +.|-+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 6899999999999999999999 44544
No 441
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=87.89 E-value=0.47 Score=47.51 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||+.++||||++..++.-.|
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f 26 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF 26 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999998877
No 442
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.88 E-value=0.41 Score=51.34 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..++|||+||..|+|.- +-.+|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 57 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLL--RPQKG 57 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 68999999999999999999983 44455
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=87.87 E-value=0.16 Score=51.19 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=0.0
Q ss_pred EEEcCCCCchHHHHHHHhCC
Q 004228 51 AVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 51 vVvG~QSsGKSSvLEal~G~ 70 (767)
|+||..+||||++|+||...
T Consensus 3 viiG~N~sGKS~il~ai~~~ 22 (303)
T PF13304_consen 3 VIIGPNGSGKSNILEAIYFL 22 (303)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 78999999999999999765
No 444
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=87.79 E-value=0.42 Score=47.56 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.--+|+|+|-++|||||+|+.|..-.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~ 38 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGE 38 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhcc
Confidence 34589999999999999999998754
No 445
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.77 E-value=0.42 Score=51.34 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+|+..|+|.- |..+|
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~--~~~~G 62 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLF--EEFEG 62 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCCC
Confidence 58999999999999999999994 55555
No 446
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=87.75 E-value=0.34 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
+-++++|..+|||||+|+||.+.-
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l 46 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVL 46 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999873
No 447
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.75 E-value=0.41 Score=48.17 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-|+++|..+||||||+..|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 37899999999999999998874
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.70 E-value=0.4 Score=52.47 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=25.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~ 80 (767)
--|+|+|..+||||++|.+|+|. +|...+++
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~--~~~~~~iv 175 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDE--IPKDERII 175 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHcc--CCccccEE
Confidence 37999999999999999999987 57665543
No 449
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=87.62 E-value=0.41 Score=52.06 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- +-.+|
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~--~p~~G 48 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLL--RPTSG 48 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 46799999999999999999983 44445
No 450
>PRK10867 signal recognition particle protein; Provisional
Probab=87.57 E-value=1.7 Score=50.04 Aligned_cols=56 Identities=29% Similarity=0.239 Sum_probs=37.0
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEE
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 192 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V 192 (767)
|+++. ..+++.+.|+.+...-.-|=.|+||+|-..+|-.+..+..--..|++ |+++
T Consensus 220 Vlda~---~gq~av~~a~~F~~~~~i~giIlTKlD~~~rgG~alsi~~~~~~PI~--fig~ 275 (433)
T PRK10867 220 VVDAM---TGQDAVNTAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIK--FIGT 275 (433)
T ss_pred EEecc---cHHHHHHHHHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCEE--EEeC
Confidence 45543 35788899988876555678899999977766666655433234433 5555
No 451
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=87.56 E-value=0.44 Score=48.33 Aligned_cols=22 Identities=45% Similarity=0.791 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.++++|..++|||+||..|+|.
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5779999999999999999998
No 452
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=87.54 E-value=1.6 Score=50.70 Aligned_cols=111 Identities=21% Similarity=0.290 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHh
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~ 124 (767)
..-|-++|+|.-=-||||||-.|=+-..-+...|..|-----.+..........--|++.||- .-|..+|.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH--eAFt~mRa------- 73 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH--EAFTAMRA------- 73 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH--HHHHHHHh-------
Confidence 456899999999999999999998887766667766642211111111001245568888873 23444443
Q ss_pred hhhcCCc------cccCCCcc--cccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 125 KEAGGNK------VTPANSDL--ANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 125 ~~~g~n~------V~~a~~D~--ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
-|.+- |+.++.-+ .|-+|++.+|.. |..+|..+||+|+.+
T Consensus 74 --RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a---~vP~iVAiNKiDk~~ 121 (509)
T COG0532 74 --RGASVTDIAILVVAADDGVMPQTIEAINHAKAA---GVPIVVAINKIDKPE 121 (509)
T ss_pred --cCCccccEEEEEEEccCCcchhHHHHHHHHHHC---CCCEEEEEecccCCC
Confidence 23322 67777665 455788889985 899999999999984
No 453
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=87.47 E-value=0.45 Score=50.43 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++|+|..+||||+||..|.|.- |..+|
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 76 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMV--DIFDG 76 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHccc--CCCCC
Confidence 58899999999999999999983 55555
No 454
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=87.44 E-value=0.45 Score=50.84 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|.|.. +-.+|
T Consensus 40 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~sG 67 (268)
T PRK10419 40 TVALLGRSGCGKSTLARLLVGLE--SPSQG 67 (268)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68999999999999999999984 33445
No 455
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.41 E-value=0.44 Score=51.57 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- +..+|
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 62 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLL--QPTSG 62 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCCc
Confidence 68999999999999999999984 44455
No 456
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.41 E-value=0.47 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68899999999999999999983
No 457
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.39 E-value=0.44 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++|+|..+||||+||..|+|.-
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 48999999999999999999994
No 458
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=87.39 E-value=0.64 Score=47.71 Aligned_cols=32 Identities=31% Similarity=0.561 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHh----CCCCccccCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALV----GRDFLPRGND 78 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~----G~~flPr~~g 78 (767)
++-+-++++|..++||||||++|. |.. +++.+
T Consensus 20 ~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~--~~~~~ 55 (204)
T cd03240 20 FFSPLTLIVGQNGAGKTTIIEALKYALTGEL--PPNSK 55 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHcCCC--Ccccc
Confidence 444588999999999999999994 884 44443
No 459
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=87.39 E-value=0.45 Score=50.65 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=26.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCccCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRR 83 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~ 83 (767)
-+++||..+|||||||.+|.|. ++..+|.++-+
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~~~ 64 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL--LKPSSGEIKIF 64 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCcceEEEc
Confidence 3789999999999999999997 34555655533
No 460
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=87.35 E-value=0.46 Score=52.66 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=22.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-+|++|.++||||++|+.|.|..-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 389999999999999999999963
No 461
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=87.35 E-value=0.44 Score=51.89 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..+||||+||..|+|.- +-.+|
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~--~p~~G 59 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMI--SPDRG 59 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 58999999999999999999984 33444
No 462
>PRK12740 elongation factor G; Reviewed
Probab=87.31 E-value=1.2 Score=53.92 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=26.1
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
|+++..+...+ ...+.+.+...|.+.|.|+||+|+...
T Consensus 90 vvd~~~~~~~~-~~~~~~~~~~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 90 VVCAVGGVEPQ-TETVWRQAEKYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred EEeCCCCcCHH-HHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 55666655333 345555565678999999999999753
No 463
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=87.31 E-value=0.46 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|.-
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 46899999999999999999984
No 464
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=87.31 E-value=0.54 Score=48.14 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCchHHHHH-HHhCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLE-ALVGR 70 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLE-al~G~ 70 (767)
...-.|++||+.+|||||+++ .+.|.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~ 33 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGE 33 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCC
Confidence 444589999999999999996 55555
No 465
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=87.29 E-value=2 Score=49.51 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCC--CCCCCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 27 PLVNKLQDIFAQLGSQS--TIELPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 27 ~lin~L~d~~~~~G~~~--~i~LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
+-++-|..+-..+..-. +..-+.+.|||-.++||||+++-++.-+
T Consensus 146 ~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad 192 (620)
T KOG1490|consen 146 SSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD 192 (620)
T ss_pred chHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc
Confidence 33444444444443333 3466799999999999999888877554
No 466
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=87.22 E-value=0.47 Score=49.34 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||+.|+|.-
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999994
No 467
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=87.19 E-value=0.45 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||..|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999999994
No 468
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=0.52 Score=55.13 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.+|+||.+++||||+++.|.|. +|-.+|
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 6999999999999999999998 454554
No 469
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=87.04 E-value=0.48 Score=52.95 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|.|.. +-.+|
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~--~p~~G 57 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLE--HQTSG 57 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999983 44444
No 470
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=86.96 E-value=0.44 Score=47.97 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
...|-|.|||..+||||+|++.|.+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 35678999999999999999999877
No 471
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=86.84 E-value=0.49 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999974
No 472
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=86.84 E-value=0.45 Score=47.24 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+||||+|+++|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999886
No 473
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=86.83 E-value=3.3 Score=44.66 Aligned_cols=56 Identities=27% Similarity=0.285 Sum_probs=34.1
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEE
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 192 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V 192 (767)
|++++. .++++..+..+-..-.-+-.|+||.|-..++..+.++..--..| +-|++.
T Consensus 197 Vl~a~~---~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l~~~~~~~~P--i~~~~~ 252 (272)
T TIGR00064 197 VLDATT---GQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELKLP--IKFIGV 252 (272)
T ss_pred EEECCC---CHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHHHHHHHHCcC--EEEEeC
Confidence 666653 45555655555433345778999999988877666655422233 446663
No 474
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=86.80 E-value=0.48 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||+.|+|..
T Consensus 24 i~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999999984
No 475
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.76 E-value=0.57 Score=52.72 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=38.9
Q ss_pred cccCCCcccccH-HHHHHHHhC--cCC---CceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhh
Q 004228 132 VTPANSDLANSD-ALQIAGIAD--PDG---YRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 201 (767)
Q Consensus 132 V~~a~~D~ans~-aL~la~~vD--P~G---~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~ 201 (767)
|++|+.....-+ +++-.+... |.+ .-+=.|+||.|-..++-.+.+++.....| +-|++.=-+-++||.
T Consensus 252 VLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lP--i~yvt~Gq~VPedl~ 325 (374)
T PRK14722 252 LLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLP--VHYVSTGQKVPENLY 325 (374)
T ss_pred EecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHHHHHHHCcC--eEEEecCCCCCcccc
Confidence 777776553322 223333321 110 23568899999988877777776544334 557776555555553
No 476
>KOG2484 consensus GTPase [General function prediction only]
Probab=86.76 E-value=0.54 Score=52.61 Aligned_cols=56 Identities=30% Similarity=0.341 Sum_probs=39.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY 110 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~ 110 (767)
.+-|||=.|+||||||++|.....-++|. -++||.==++.| +..-.+++.||-.+.
T Consensus 254 rvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L------dk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 254 RVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL------DKKIRLLDSPGIVPP 310 (435)
T ss_pred EeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec------cCCceeccCCceeec
Confidence 56789999999999999999998888886 367773222222 233446677775544
No 477
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.72 E-value=0.52 Score=50.70 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|+|.- +-.+|
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 62 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLL--EAESG 62 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 58999999999999999999984 33444
No 478
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.71 E-value=0.52 Score=49.22 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.++++|..++|||+||..|+|.. +..+|
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~--~p~~G 54 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFI--KPDSG 54 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCce
Confidence 57899999999999999999984 44444
No 479
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=86.59 E-value=0.51 Score=54.78 Aligned_cols=29 Identities=38% Similarity=0.431 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+|||||||..|+|.- |..+|.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G~~--~p~~G~ 59 (490)
T PRK10938 31 SWAFVGANGSGKSALARALAGEL--PLLSGE 59 (490)
T ss_pred EEEEECCCCCCHHHHHHHHhccC--CCCCce
Confidence 48899999999999999999983 445553
No 480
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=86.53 E-value=0.71 Score=45.40 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 28 lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.+++|.+.+. ....-+-+-|+|+|..++|||+||+++...
T Consensus 8 e~~~l~~~l~---~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 8 EIERLRDLLD---AAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHHHTTG---GTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4555655443 222345588999999999999999988655
No 481
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=86.45 E-value=0.51 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||..|+|.-
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999994
No 482
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=86.44 E-value=0.52 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.++++|..+||||+||..|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4889999999999999999997
No 483
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=86.44 E-value=0.53 Score=48.75 Aligned_cols=23 Identities=43% Similarity=0.767 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|.-
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 46899999999999999999983
No 484
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.43 E-value=0.52 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..++|||+||.+|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999983
No 485
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.38 E-value=0.52 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999999984
No 486
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.28 E-value=0.54 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++|+|..+||||+||..|+|..
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999973
No 487
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=86.27 E-value=0.54 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||+.|+|.-
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48899999999999999999984
No 488
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.20 E-value=2.2 Score=48.37 Aligned_cols=65 Identities=20% Similarity=0.111 Sum_probs=41.6
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhh
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 201 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~ 201 (767)
|++|+..- .+..++++.+-+-| -+=.|+||.|-..++-.+.+++.....| +-|+++=-+-++||.
T Consensus 292 Vlsat~~~--~~~~~~~~~~~~~~-~~~~I~TKlDet~~~G~~l~~~~~~~~P--i~yit~Gq~vPeDl~ 356 (388)
T PRK12723 292 AVSSTTKT--SDVKEIFHQFSPFS-YKTVIFTKLDETTCVGNLISLIYEMRKE--VSYVTDGQIVPHNIS 356 (388)
T ss_pred EEcCCCCH--HHHHHHHHHhcCCC-CCEEEEEeccCCCcchHHHHHHHHHCCC--EEEEeCCCCChhhhh
Confidence 77887653 33345666654322 3557999999988887777777554455 457776444455553
No 489
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=86.17 E-value=0.53 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||..|.|..
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 36899999999999999999984
No 490
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=86.16 E-value=0.54 Score=52.43 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+||..|.|.. +-.+|
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~--~p~~G 53 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLT--RPQKG 53 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 58999999999999999999984 33444
No 491
>PLN00023 GTP-binding protein; Provisional
Probab=86.13 E-value=0.6 Score=51.61 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=26.6
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
....-+|+|||+.++||||+|..+++-.|..
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~ 48 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIA 48 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCccc
Confidence 3556689999999999999999999887743
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=86.09 E-value=0.48 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|.++||||+|+++|.|.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999987
No 493
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=86.08 E-value=0.54 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..++|||+||.+|.|.-
T Consensus 32 ~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhhhc
Confidence 69999999999999999999994
No 494
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=85.99 E-value=0.61 Score=49.28 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+||||+||..|+|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999994
No 495
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.93 E-value=0.53 Score=60.57 Aligned_cols=29 Identities=48% Similarity=0.704 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
-++|||.-+|||||||.||.|. +|.-+|-
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGE--m~~~sG~ 577 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGE--MPKLSGS 577 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--cccccce
Confidence 3899999999999999999999 6887773
No 496
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.90 E-value=0.58 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||.+|+|.-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68899999999999999999984
No 497
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.90 E-value=3.8 Score=48.25 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=38.7
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhh
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 201 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~ 201 (767)
|++++... .+..++++.+... .-+-.|+||+|...+...+.+++.... +.+-|++.=-+-++||.
T Consensus 464 VLpAtss~--~Dl~eii~~f~~~-~~~gvILTKlDEt~~lG~aLsv~~~~~--LPI~yvt~GQ~VPeDL~ 528 (559)
T PRK12727 464 VLPANAHF--SDLDEVVRRFAHA-KPQGVVLTKLDETGRFGSALSVVVDHQ--MPITWVTDGQRVPDDLH 528 (559)
T ss_pred EEECCCCh--hHHHHHHHHHHhh-CCeEEEEecCcCccchhHHHHHHHHhC--CCEEEEeCCCCchhhhh
Confidence 67777532 2333444444332 345689999999877777777765433 34557776444445543
No 498
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=85.89 E-value=0.58 Score=49.64 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||..|+|.-
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999984
No 499
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=85.84 E-value=0.52 Score=52.30 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
-|+|+|..+||||++|+||.+. +|...-+
T Consensus 162 nili~G~tgSGKTTll~aL~~~--ip~~~ri 190 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALRE--IPAIERL 190 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhh--CCCCCeE
Confidence 4999999999999999999865 5765443
No 500
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=85.76 E-value=0.55 Score=47.25 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHHh
Q 004228 49 QVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~ 68 (767)
--+++|..++|||++||||.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~ 43 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAIC 43 (178)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999995
Done!