Query 004228
Match_columns 767
No_of_seqs 284 out of 1704
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 18:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 7E-107 3E-111 957.1 46.7 644 22-685 26-770 (772)
2 3szr_A Interferon-induced GTP- 100.0 6.7E-89 2.3E-93 796.6 45.6 518 20-681 19-607 (608)
3 3t34_A Dynamin-related protein 100.0 1.4E-43 4.8E-48 388.8 18.5 258 23-280 2-328 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 3.1E-41 1.1E-45 369.5 28.0 277 22-300 6-345 (353)
5 3ljb_A Interferon-induced GTP- 100.0 7.5E-41 2.6E-45 351.3 21.3 264 279-656 3-271 (271)
6 1jwy_B Dynamin A GTPase domain 100.0 2.2E-32 7.6E-37 292.5 22.2 249 23-272 1-315 (315)
7 2aka_B Dynamin-1; fusion prote 100.0 1.2E-29 4E-34 268.9 25.0 239 22-262 1-299 (299)
8 2j69_A Bacterial dynamin-like 99.2 9E-11 3.1E-15 139.1 16.9 144 24-171 50-246 (695)
9 4dhe_A Probable GTP-binding pr 98.3 7.1E-07 2.4E-11 89.2 8.3 122 45-169 27-158 (223)
10 3pqc_A Probable GTP-binding pr 98.3 6.2E-06 2.1E-10 79.9 13.2 118 45-169 21-147 (195)
11 3iev_A GTP-binding protein ERA 98.3 4.7E-06 1.6E-10 89.1 12.8 120 47-169 10-136 (308)
12 3lxx_A GTPase IMAP family memb 98.2 1.9E-06 6.5E-11 87.9 7.9 122 45-170 27-160 (239)
13 1svi_A GTP-binding protein YSX 98.2 3.3E-06 1.1E-10 82.2 8.6 119 45-170 21-149 (195)
14 1wf3_A GTP-binding protein; GT 98.1 7.8E-06 2.7E-10 87.2 10.8 121 46-171 6-133 (301)
15 2cxx_A Probable GTP-binding pr 98.1 8.4E-06 2.9E-10 78.7 9.5 54 47-107 1-54 (190)
16 3iby_A Ferrous iron transport 98.0 6.2E-06 2.1E-10 85.9 7.6 116 47-169 1-124 (256)
17 1h65_A Chloroplast outer envel 98.0 9.6E-06 3.3E-10 84.6 8.9 120 45-171 37-170 (270)
18 2lkc_A Translation initiation 98.0 2.3E-05 7.9E-10 74.8 10.2 114 44-170 5-122 (178)
19 1mky_A Probable GTP-binding pr 98.0 5.7E-06 1.9E-10 92.7 6.6 118 47-168 1-123 (439)
20 2hjg_A GTP-binding protein ENG 98.0 9.9E-06 3.4E-10 90.7 7.9 119 47-170 3-126 (436)
21 2dyk_A GTP-binding protein; GT 98.0 6.6E-06 2.3E-10 77.1 5.4 116 47-170 1-123 (161)
22 4dcu_A GTP-binding protein ENG 97.9 7.1E-06 2.4E-10 92.4 6.5 122 44-170 20-146 (456)
23 2qu8_A Putative nucleolar GTP- 97.9 1.3E-05 4.6E-10 80.8 7.9 118 46-169 28-156 (228)
24 2ged_A SR-beta, signal recogni 97.9 1.6E-05 5.5E-10 77.3 7.9 55 19-73 20-74 (193)
25 4dcu_A GTP-binding protein ENG 97.9 3.2E-05 1.1E-09 87.0 11.5 140 22-170 169-321 (456)
26 2qtf_A Protein HFLX, GTP-bindi 97.9 2.6E-05 8.8E-10 85.5 9.8 123 46-171 178-308 (364)
27 2qpt_A EH domain-containing pr 97.9 1.5E-05 5.2E-10 91.9 8.3 118 46-170 64-233 (550)
28 3gee_A MNME, tRNA modification 97.9 3.1E-05 1.1E-09 87.8 10.6 117 48-171 234-359 (476)
29 1ky3_A GTP-binding protein YPT 97.9 4E-05 1.4E-09 73.1 9.8 30 46-75 7-36 (182)
30 1ega_A Protein (GTP-binding pr 97.9 1.1E-05 3.8E-10 85.9 6.3 120 45-169 6-130 (301)
31 1mky_A Probable GTP-binding pr 97.9 3.9E-05 1.3E-09 85.9 10.6 143 22-170 150-307 (439)
32 2hjg_A GTP-binding protein ENG 97.9 2.4E-05 8.3E-10 87.5 8.8 140 22-170 149-301 (436)
33 2il1_A RAB12; G-protein, GDP, 97.8 3.8E-05 1.3E-09 75.1 8.4 114 47-169 26-145 (192)
34 3def_A T7I23.11 protein; chlor 97.8 3E-05 1E-09 80.5 7.6 120 46-170 35-166 (262)
35 3t5d_A Septin-7; GTP-binding p 97.8 6E-05 2.1E-09 78.7 9.6 120 48-170 9-159 (274)
36 3geh_A MNME, tRNA modification 97.8 5.4E-05 1.8E-09 85.5 9.6 116 48-171 225-346 (462)
37 1xzp_A Probable tRNA modificat 97.8 5E-05 1.7E-09 86.2 9.3 113 48-170 244-365 (482)
38 2g6b_A RAS-related protein RAB 97.8 3.9E-05 1.3E-09 73.3 7.2 114 47-169 10-130 (180)
39 3tw8_B RAS-related protein RAB 97.7 0.0001 3.5E-09 70.2 9.8 29 46-74 8-36 (181)
40 2xtp_A GTPase IMAP family memb 97.7 6.9E-05 2.3E-09 77.2 9.1 121 45-169 20-153 (260)
41 3i8s_A Ferrous iron transport 97.7 2.1E-05 7.3E-10 82.4 5.3 116 47-169 3-126 (274)
42 2yc2_C IFT27, small RAB-relate 97.7 9.4E-05 3.2E-09 72.3 9.3 25 48-72 21-47 (208)
43 3a1s_A Iron(II) transport prot 97.7 5E-05 1.7E-09 79.0 7.5 115 47-169 5-124 (258)
44 2fn4_A P23, RAS-related protei 97.7 2.6E-05 8.8E-10 74.4 4.9 114 46-169 8-128 (181)
45 1z0f_A RAB14, member RAS oncog 97.7 4.8E-05 1.6E-09 72.3 6.4 115 46-169 14-134 (179)
46 2gj8_A MNME, tRNA modification 97.7 0.00013 4.4E-09 70.3 9.4 118 48-169 5-129 (172)
47 3lxw_A GTPase IMAP family memb 97.7 6.8E-05 2.3E-09 77.3 7.9 119 47-169 21-153 (247)
48 1kao_A RAP2A; GTP-binding prot 97.7 6.9E-05 2.4E-09 70.1 7.1 111 48-169 4-122 (167)
49 2wji_A Ferrous iron transport 97.6 7.7E-05 2.6E-09 71.1 7.4 114 48-169 4-122 (165)
50 3bc1_A RAS-related protein RAB 97.6 5.3E-05 1.8E-09 73.0 6.1 27 47-73 11-37 (195)
51 3b1v_A Ferrous iron uptake tra 97.6 8.1E-05 2.8E-09 78.2 7.7 113 47-169 3-121 (272)
52 1g16_A RAS-related protein SEC 97.6 0.0001 3.6E-09 69.3 7.6 111 48-168 4-121 (170)
53 4djt_A GTP-binding nuclear pro 97.6 6.2E-05 2.1E-09 74.8 6.1 113 48-170 12-132 (218)
54 1wms_A RAB-9, RAB9, RAS-relate 97.6 7.8E-05 2.7E-09 71.0 6.5 29 46-74 6-34 (177)
55 2ce2_X GTPase HRAS; signaling 97.6 6.6E-05 2.3E-09 70.0 5.7 112 48-169 4-122 (166)
56 3k53_A Ferrous iron transport 97.6 7.1E-05 2.4E-09 78.0 6.3 114 46-169 2-123 (271)
57 1u8z_A RAS-related protein RAL 97.5 8.6E-05 2.9E-09 69.5 6.1 113 47-169 4-123 (168)
58 1ek0_A Protein (GTP-binding pr 97.5 4.7E-05 1.6E-09 71.6 4.2 111 48-170 4-123 (170)
59 2nzj_A GTP-binding protein REM 97.5 5.2E-05 1.8E-09 72.0 4.5 28 47-74 4-31 (175)
60 1z0j_A RAB-22, RAS-related pro 97.5 7.9E-05 2.7E-09 70.2 5.8 110 48-169 7-125 (170)
61 4bas_A ADP-ribosylation factor 97.5 8.4E-05 2.9E-09 72.3 6.1 30 45-74 15-44 (199)
62 3cph_A RAS-related protein SEC 97.5 6.4E-05 2.2E-09 74.1 5.3 113 46-168 19-138 (213)
63 4dsu_A GTPase KRAS, isoform 2B 97.5 0.00014 4.6E-09 69.9 7.5 112 48-169 5-123 (189)
64 3con_A GTPase NRAS; structural 97.5 0.00015 5E-09 70.3 7.7 29 46-74 20-48 (190)
65 2a9k_A RAS-related protein RAL 97.5 0.00011 3.7E-09 70.4 6.7 115 45-169 16-137 (187)
66 1zbd_A Rabphilin-3A; G protein 97.5 0.00011 3.9E-09 71.9 7.0 112 46-169 7-127 (203)
67 2wjg_A FEOB, ferrous iron tran 97.5 9.5E-05 3.2E-09 71.3 6.3 118 45-169 5-126 (188)
68 2efe_B Small GTP-binding prote 97.5 5.8E-05 2E-09 72.1 4.7 113 46-170 11-132 (181)
69 2f7s_A C25KG, RAS-related prot 97.5 0.00011 3.6E-09 73.1 6.6 28 46-73 24-51 (217)
70 3q72_A GTP-binding protein RAD 97.5 0.00011 3.7E-09 69.2 6.3 29 47-75 2-30 (166)
71 3tkl_A RAS-related protein RAB 97.5 5.5E-05 1.9E-09 73.4 4.3 116 46-170 15-136 (196)
72 1c1y_A RAS-related protein RAP 97.5 0.00014 4.7E-09 68.3 6.9 26 48-73 4-29 (167)
73 2erx_A GTP-binding protein DI- 97.5 0.00011 3.8E-09 69.1 6.1 26 48-73 4-29 (172)
74 1z08_A RAS-related protein RAB 97.5 6.8E-05 2.3E-09 70.7 4.6 28 48-75 7-34 (170)
75 2bme_A RAB4A, RAS-related prot 97.5 0.00011 3.7E-09 70.7 5.6 113 47-169 10-129 (186)
76 2bov_A RAla, RAS-related prote 97.5 0.00019 6.6E-09 70.1 7.5 116 44-169 11-133 (206)
77 2e87_A Hypothetical protein PH 97.4 0.00029 9.9E-09 76.6 9.5 118 45-169 165-294 (357)
78 3clv_A RAB5 protein, putative; 97.4 8.6E-05 2.9E-09 71.8 4.8 29 46-74 6-34 (208)
79 2fg5_A RAB-22B, RAS-related pr 97.4 6.8E-05 2.3E-09 73.2 4.0 113 46-169 22-142 (192)
80 2y8e_A RAB-protein 6, GH09086P 97.4 4E-05 1.4E-09 72.9 2.2 114 47-169 14-133 (179)
81 1z2a_A RAS-related protein RAB 97.4 5.1E-05 1.7E-09 71.4 2.7 27 47-73 5-31 (168)
82 1vg8_A RAS-related protein RAB 97.4 0.00016 5.3E-09 70.9 5.8 34 46-79 7-40 (207)
83 2p5s_A RAS and EF-hand domain 97.4 0.00017 5.9E-09 70.7 6.1 113 46-169 27-147 (199)
84 1z06_A RAS-related protein RAB 97.4 0.00023 7.8E-09 69.0 6.9 30 46-75 19-48 (189)
85 3oes_A GTPase rhebl1; small GT 97.4 0.00015 5E-09 71.4 5.6 29 45-73 22-50 (201)
86 2o52_A RAS-related protein RAB 97.4 0.00015 5E-09 71.5 5.5 31 46-76 24-54 (200)
87 2oil_A CATX-8, RAS-related pro 97.4 0.0001 3.5E-09 71.6 4.3 30 46-75 24-53 (193)
88 3qq5_A Small GTP-binding prote 97.4 5E-05 1.7E-09 84.9 2.2 120 46-172 33-157 (423)
89 1nrj_B SR-beta, signal recogni 97.4 0.00069 2.4E-08 67.1 10.4 115 45-171 10-136 (218)
90 1r8s_A ADP-ribosylation factor 97.4 0.00033 1.1E-08 65.6 7.6 24 49-72 2-25 (164)
91 1zd9_A ADP-ribosylation factor 97.4 0.00031 1.1E-08 68.2 7.6 26 48-73 23-48 (188)
92 3dz8_A RAS-related protein RAB 97.4 0.00015 5.2E-09 70.6 5.3 29 46-74 22-50 (191)
93 1x3s_A RAS-related protein RAB 97.3 0.00013 4.6E-09 70.5 4.8 31 46-76 14-44 (195)
94 2h57_A ADP-ribosylation factor 97.3 0.0001 3.6E-09 71.5 3.9 26 46-71 20-45 (190)
95 2bcg_Y Protein YP2, GTP-bindin 97.3 0.00016 5.6E-09 71.1 5.4 27 47-73 8-34 (206)
96 3kkq_A RAS-related protein M-R 97.3 0.00027 9.2E-09 67.8 6.4 29 45-73 16-44 (183)
97 2gf9_A RAS-related protein RAB 97.3 0.00031 1.1E-08 68.1 6.8 29 47-75 22-50 (189)
98 1zj6_A ADP-ribosylation factor 97.3 0.00045 1.5E-08 66.8 7.7 28 46-73 15-42 (187)
99 2ew1_A RAS-related protein RAB 97.3 0.00026 8.8E-09 70.3 6.1 114 46-169 25-145 (201)
100 1ksh_A ARF-like protein 2; sma 97.3 0.0007 2.4E-08 65.2 9.0 26 46-71 17-42 (186)
101 3t5g_A GTP-binding protein RHE 97.2 0.00022 7.7E-09 68.2 5.0 28 47-74 6-33 (181)
102 2gf0_A GTP-binding protein DI- 97.2 0.00025 8.6E-09 68.8 5.2 27 46-72 7-33 (199)
103 2a5j_A RAS-related protein RAB 97.2 0.00019 6.6E-09 69.8 4.3 30 47-76 21-50 (191)
104 1lnz_A SPO0B-associated GTP-bi 97.2 8.5E-05 2.9E-09 80.7 1.9 39 47-85 158-196 (342)
105 2gco_A H9, RHO-related GTP-bin 97.2 0.00016 5.6E-09 71.1 3.7 26 48-73 26-51 (201)
106 1pui_A ENGB, probable GTP-bind 97.2 0.00028 9.7E-09 69.4 5.4 117 48-171 27-153 (210)
107 1upt_A ARL1, ADP-ribosylation 97.2 0.00043 1.5E-08 65.2 6.3 26 47-72 7-32 (171)
108 2h17_A ADP-ribosylation factor 97.2 0.0004 1.4E-08 66.9 6.2 26 47-72 21-46 (181)
109 3q85_A GTP-binding protein REM 97.2 0.0002 6.7E-09 67.6 3.7 27 47-73 2-28 (169)
110 3cpj_B GTP-binding protein YPT 97.2 0.00043 1.5E-08 69.3 6.3 30 46-75 12-41 (223)
111 2hxs_A RAB-26, RAS-related pro 97.2 0.00012 4E-09 69.8 2.0 27 47-73 6-32 (178)
112 2fh5_B SR-beta, signal recogni 97.2 0.00099 3.4E-08 65.8 8.8 31 46-76 6-36 (214)
113 2atv_A RERG, RAS-like estrogen 97.1 0.00032 1.1E-08 68.5 5.0 30 46-75 27-56 (196)
114 1r2q_A RAS-related protein RAB 97.1 0.00019 6.5E-09 67.4 3.2 27 48-74 7-33 (170)
115 2qag_B Septin-6, protein NEDD5 97.1 0.0008 2.7E-08 75.1 8.7 123 46-171 41-192 (427)
116 3l0i_B RAS-related protein RAB 97.1 0.0001 3.5E-09 72.3 1.4 28 47-74 33-60 (199)
117 2hup_A RAS-related protein RAB 97.1 0.00061 2.1E-08 67.1 6.8 114 46-169 28-148 (201)
118 3izy_P Translation initiation 97.1 0.00018 6.3E-09 82.6 3.5 112 47-170 4-119 (537)
119 2fu5_C RAS-related protein RAB 97.1 0.00011 3.8E-09 70.5 1.3 26 47-72 8-33 (183)
120 1m2o_B GTP-binding protein SAR 97.1 0.0012 4E-08 64.5 8.6 28 45-72 21-48 (190)
121 2atx_A Small GTP binding prote 97.1 0.00057 1.9E-08 66.4 6.3 25 48-72 19-43 (194)
122 2qag_C Septin-7; cell cycle, c 97.1 0.0018 6.1E-08 72.2 11.0 28 49-76 33-60 (418)
123 2fv8_A H6, RHO-related GTP-bin 97.1 0.00026 8.8E-09 70.0 3.8 26 48-73 26-51 (207)
124 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00019 6.4E-09 68.8 2.6 26 48-73 6-31 (186)
125 3llu_A RAS-related GTP-binding 97.1 0.00048 1.6E-08 67.4 5.5 29 46-75 19-47 (196)
126 3dpu_A RAB family protein; roc 97.0 0.0014 4.8E-08 75.1 9.8 30 44-73 38-67 (535)
127 1moz_A ARL1, ADP-ribosylation 97.0 0.00054 1.8E-08 65.5 5.0 27 46-72 17-43 (183)
128 1f6b_A SAR1; gtpases, N-termin 97.0 0.0011 3.7E-08 65.3 7.3 28 45-72 23-50 (198)
129 3cbq_A GTP-binding protein REM 97.0 0.00073 2.5E-08 66.4 6.0 27 46-72 22-48 (195)
130 2q3h_A RAS homolog gene family 97.0 0.00062 2.1E-08 66.5 5.3 28 45-72 18-45 (201)
131 2iwr_A Centaurin gamma 1; ANK 97.0 0.00086 2.9E-08 63.9 6.1 28 47-74 7-34 (178)
132 3bwd_D RAC-like GTP-binding pr 96.9 0.00038 1.3E-08 66.4 3.4 27 46-72 7-33 (182)
133 4gzl_A RAS-related C3 botulinu 96.9 0.00019 6.7E-09 70.9 1.3 29 45-73 28-56 (204)
134 2b6h_A ADP-ribosylation factor 96.9 0.00071 2.4E-08 66.2 5.1 28 46-73 28-55 (192)
135 3sjy_A Translation initiation 96.9 0.00097 3.3E-08 73.7 6.8 27 46-72 7-33 (403)
136 2j1l_A RHO-related GTP-binding 96.9 0.00051 1.7E-08 68.4 4.0 26 47-72 34-59 (214)
137 3reg_A RHO-like small GTPase; 96.9 0.00035 1.2E-08 68.0 2.4 27 46-72 22-48 (194)
138 2qag_A Septin-2, protein NEDD5 96.8 0.001 3.4E-08 72.6 6.1 28 48-75 38-65 (361)
139 1fzq_A ADP-ribosylation factor 96.8 0.0017 6E-08 62.6 6.9 28 45-72 14-41 (181)
140 3c5c_A RAS-like protein 12; GD 96.8 0.00064 2.2E-08 66.1 3.7 27 47-73 21-47 (187)
141 2x77_A ADP-ribosylation factor 96.8 0.0014 4.8E-08 63.3 6.0 28 46-73 21-48 (189)
142 3t1o_A Gliding protein MGLA; G 96.8 0.0028 9.5E-08 60.9 7.9 24 47-70 14-37 (198)
143 3ihw_A Centg3; RAS, centaurin, 96.7 0.0011 3.8E-08 64.4 4.9 29 45-73 18-46 (184)
144 1wb1_A Translation elongation 96.7 0.0018 6E-08 73.5 7.2 109 46-169 18-139 (482)
145 3th5_A RAS-related C3 botulinu 95.8 0.00024 8.3E-09 69.8 0.0 28 46-73 29-56 (204)
146 3lvq_E ARF-GAP with SH3 domain 96.6 0.015 5E-07 65.7 13.9 109 47-170 322-438 (497)
147 1zo1_I IF2, translation initia 96.6 0.00085 2.9E-08 76.5 3.6 109 46-169 3-117 (501)
148 4a9a_A Ribosome-interacting GT 96.6 0.00083 2.9E-08 73.8 3.4 59 46-107 71-129 (376)
149 2j0v_A RAC-like GTP-binding pr 96.6 0.00093 3.2E-08 65.9 3.5 27 46-72 8-34 (212)
150 3r7w_A Gtpase1, GTP-binding pr 96.6 0.0021 7.3E-08 68.2 6.5 114 48-169 4-129 (307)
151 2g3y_A GTP-binding protein GEM 96.6 0.0032 1.1E-07 63.3 6.9 26 46-71 36-61 (211)
152 3o47_A ADP-ribosylation factor 96.5 0.0013 4.4E-08 70.8 4.0 24 49-72 167-190 (329)
153 3gj0_A GTP-binding nuclear pro 96.5 0.00059 2E-08 68.0 1.1 114 45-170 13-134 (221)
154 1g7s_A Translation initiation 96.5 0.00075 2.6E-08 78.5 2.1 112 46-169 4-136 (594)
155 3izq_1 HBS1P, elongation facto 96.4 0.0061 2.1E-07 71.1 8.7 27 45-71 165-191 (611)
156 3tr5_A RF-3, peptide chain rel 96.3 0.0028 9.7E-08 72.7 5.5 112 46-170 12-149 (528)
157 1gwn_A RHO-related GTP-binding 96.3 0.0029 1E-07 62.7 5.0 26 47-72 28-53 (205)
158 3sop_A Neuronal-specific septi 96.2 0.007 2.4E-07 63.3 7.5 24 49-72 4-27 (270)
159 2wkq_A NPH1-1, RAS-related C3 96.1 0.0036 1.2E-07 65.9 4.8 28 46-73 154-181 (332)
160 1s0u_A EIF-2-gamma, translatio 96.1 0.014 4.7E-07 64.5 9.2 25 46-70 7-31 (408)
161 2j37_W Signal recognition part 96.0 0.0096 3.3E-07 67.8 7.9 123 48-178 102-263 (504)
162 3p26_A Elongation factor 1 alp 96.0 0.014 4.9E-07 65.9 9.0 26 45-70 31-56 (483)
163 1kk1_A EIF2gamma; initiation o 95.9 0.01 3.6E-07 65.5 7.5 25 46-70 9-33 (410)
164 2c78_A Elongation factor TU-A; 95.9 0.0092 3.1E-07 65.8 6.7 25 46-70 10-34 (405)
165 2xex_A Elongation factor G; GT 95.9 0.0076 2.6E-07 71.3 6.3 111 46-170 9-142 (693)
166 2h5e_A Peptide chain release f 95.8 0.012 4.1E-07 67.5 7.5 113 46-171 12-150 (529)
167 1puj_A YLQF, conserved hypothe 95.8 0.0056 1.9E-07 64.5 4.3 59 47-111 120-179 (282)
168 3j2k_7 ERF3, eukaryotic polype 95.7 0.0099 3.4E-07 66.5 6.3 25 46-70 16-40 (439)
169 2qnr_A Septin-2, protein NEDD5 95.7 0.012 4E-07 62.5 6.2 27 49-75 20-46 (301)
170 3dm5_A SRP54, signal recogniti 95.6 0.041 1.4E-06 61.6 10.5 56 132-192 219-274 (443)
171 4dkx_A RAS-related protein RAB 95.5 0.016 5.5E-07 58.4 6.4 25 49-73 15-39 (216)
172 1zun_B Sulfate adenylate trans 95.5 0.014 4.7E-07 65.0 6.3 26 46-71 23-48 (434)
173 1dar_A EF-G, elongation factor 95.2 0.024 8.3E-07 67.0 7.2 23 46-68 11-33 (691)
174 1f5n_A Interferon-induced guan 95.0 0.017 5.9E-07 66.9 5.0 28 45-72 36-63 (592)
175 2ywe_A GTP-binding protein LEP 94.9 0.035 1.2E-06 64.5 7.5 114 47-170 6-140 (600)
176 3ec1_A YQEH GTPase; atnos1, at 94.9 0.023 7.7E-07 62.1 5.4 72 22-108 146-223 (369)
177 1wxq_A GTP-binding protein; st 94.8 0.012 4.2E-07 65.0 3.3 38 49-87 2-40 (397)
178 1d2e_A Elongation factor TU (E 94.8 0.016 5.5E-07 63.8 4.2 22 49-70 5-26 (397)
179 1jny_A EF-1-alpha, elongation 94.7 0.033 1.1E-06 62.1 6.4 25 46-70 5-29 (435)
180 1jal_A YCHF protein; nucleotid 94.7 0.016 5.4E-07 63.4 3.5 38 48-85 3-40 (363)
181 2zej_A Dardarin, leucine-rich 94.6 0.016 5.6E-07 55.7 3.3 23 48-70 3-25 (184)
182 2elf_A Protein translation elo 94.6 0.039 1.3E-06 60.3 6.6 99 46-167 20-125 (370)
183 2v3c_C SRP54, signal recogniti 94.6 0.044 1.5E-06 61.2 7.0 124 49-179 101-262 (432)
184 2f9l_A RAB11B, member RAS onco 94.6 0.019 6.4E-07 56.0 3.6 27 47-73 5-31 (199)
185 3h2y_A GTPase family protein; 94.6 0.027 9.4E-07 61.4 5.2 72 22-108 144-222 (368)
186 1oix_A RAS-related protein RAB 94.5 0.02 6.8E-07 55.7 3.6 26 47-72 29-54 (191)
187 3cb4_D GTP-binding protein LEP 94.5 0.025 8.5E-07 65.8 4.8 114 47-170 4-138 (599)
188 1f60_A Elongation factor EEF1A 94.5 0.032 1.1E-06 62.7 5.6 25 46-70 6-30 (458)
189 2rdo_7 EF-G, elongation factor 94.5 0.066 2.3E-06 63.4 8.5 24 46-69 9-32 (704)
190 2cjw_A GTP-binding protein GEM 94.4 0.016 5.5E-07 56.5 2.6 24 47-70 6-29 (192)
191 1ni3_A YCHF GTPase, YCHF GTP-b 94.4 0.022 7.6E-07 62.8 3.9 39 48-86 21-60 (392)
192 1m7b_A RND3/RHOE small GTP-bin 94.2 0.02 6.8E-07 54.9 2.7 26 47-72 7-32 (184)
193 3mca_A HBS1, elongation factor 94.0 0.019 6.4E-07 66.7 2.5 23 48-70 178-200 (592)
194 3q3j_B RHO-related GTP-binding 94.0 0.03 1E-06 55.6 3.6 29 45-73 25-53 (214)
195 2ohf_A Protein OLA1, GTP-bindi 93.9 0.026 8.8E-07 62.4 3.2 37 48-85 23-60 (396)
196 2dy1_A Elongation factor G; tr 93.9 0.06 2E-06 63.4 6.5 26 46-71 8-33 (665)
197 3kl4_A SRP54, signal recogniti 93.7 0.054 1.8E-06 60.5 5.4 45 132-179 218-262 (433)
198 3cnl_A YLQF, putative uncharac 93.6 0.039 1.3E-06 57.3 3.8 36 48-83 100-136 (262)
199 2dby_A GTP-binding protein; GD 93.3 0.027 9.3E-07 61.6 2.2 39 48-86 2-40 (368)
200 1tq4_A IIGP1, interferon-induc 93.2 0.066 2.3E-06 59.4 5.0 112 47-168 69-188 (413)
201 2www_A Methylmalonic aciduria 93.2 0.049 1.7E-06 58.9 3.9 26 45-70 72-97 (349)
202 1r5b_A Eukaryotic peptide chai 93.0 0.084 2.9E-06 59.4 5.6 24 46-69 42-65 (467)
203 1n0u_A EF-2, elongation factor 92.9 0.044 1.5E-06 66.3 3.2 25 46-70 18-42 (842)
204 3avx_A Elongation factor TS, e 92.5 0.077 2.6E-06 65.8 4.6 26 45-70 294-319 (1289)
205 3c5h_A Glucocorticoid receptor 91.9 0.091 3.1E-06 53.9 3.7 25 45-69 17-50 (255)
206 1mv5_A LMRA, multidrug resista 91.7 0.092 3.2E-06 53.7 3.5 23 49-71 30-52 (243)
207 3tif_A Uncharacterized ABC tra 91.5 0.076 2.6E-06 54.1 2.5 23 49-71 33-55 (235)
208 4g1u_C Hemin import ATP-bindin 91.5 0.094 3.2E-06 54.6 3.3 28 49-78 39-66 (266)
209 2pcj_A ABC transporter, lipopr 91.4 0.073 2.5E-06 53.8 2.3 23 49-71 32-54 (224)
210 2hf9_A Probable hydrogenase ni 91.3 0.093 3.2E-06 51.9 3.0 27 46-72 37-63 (226)
211 2wsm_A Hydrogenase expression/ 91.2 0.081 2.8E-06 52.2 2.4 25 46-70 29-53 (221)
212 1g6h_A High-affinity branched- 91.1 0.089 3E-06 54.4 2.5 23 49-71 35-57 (257)
213 2pze_A Cystic fibrosis transme 90.9 0.094 3.2E-06 53.2 2.5 23 49-71 36-58 (229)
214 1sgw_A Putative ABC transporte 90.9 0.096 3.3E-06 52.8 2.5 23 49-71 37-59 (214)
215 1udx_A The GTP-binding protein 90.8 0.12 4.3E-06 57.3 3.7 39 47-85 157-195 (416)
216 3ney_A 55 kDa erythrocyte memb 90.8 0.091 3.1E-06 52.4 2.3 24 47-70 19-42 (197)
217 3gfo_A Cobalt import ATP-bindi 90.8 0.096 3.3E-06 54.9 2.5 23 49-71 36-58 (275)
218 1b0u_A Histidine permease; ABC 90.8 0.097 3.3E-06 54.3 2.5 23 49-71 34-56 (262)
219 2cbz_A Multidrug resistance-as 90.7 0.093 3.2E-06 53.6 2.2 23 49-71 33-55 (237)
220 2ff7_A Alpha-hemolysin translo 90.6 0.1 3.6E-06 53.6 2.5 23 49-71 37-59 (247)
221 2gza_A Type IV secretion syste 90.5 0.12 4.1E-06 56.1 3.1 31 49-81 177-207 (361)
222 1ji0_A ABC transporter; ATP bi 90.5 0.11 3.7E-06 53.2 2.5 23 49-71 34-56 (240)
223 2onk_A Molybdate/tungstate ABC 90.5 0.11 3.7E-06 53.3 2.6 23 49-71 26-48 (240)
224 1lvg_A Guanylate kinase, GMP k 90.5 0.1 3.5E-06 51.4 2.4 22 49-70 6-27 (198)
225 1kgd_A CASK, peripheral plasma 90.5 0.11 3.6E-06 50.3 2.4 22 49-70 7-28 (180)
226 1znw_A Guanylate kinase, GMP k 90.4 0.11 3.6E-06 51.4 2.4 22 49-70 22-43 (207)
227 1ex7_A Guanylate kinase; subst 90.4 0.1 3.5E-06 51.5 2.2 35 50-84 4-40 (186)
228 1u0l_A Probable GTPase ENGC; p 90.3 0.15 5.2E-06 53.8 3.5 24 49-72 171-194 (301)
229 2ixe_A Antigen peptide transpo 90.2 0.12 4E-06 54.0 2.5 23 49-71 47-69 (271)
230 2pt7_A CAG-ALFA; ATPase, prote 90.2 0.11 3.9E-06 55.7 2.5 31 49-81 173-203 (330)
231 1vpl_A ABC transporter, ATP-bi 90.2 0.12 4E-06 53.6 2.5 23 49-71 43-65 (256)
232 2nq2_C Hypothetical ABC transp 90.2 0.12 4E-06 53.4 2.5 31 49-81 33-63 (253)
233 2olj_A Amino acid ABC transpor 90.1 0.12 4.1E-06 53.8 2.5 23 49-71 52-74 (263)
234 2d2e_A SUFC protein; ABC-ATPas 90.1 0.12 4.1E-06 53.1 2.5 22 49-70 31-52 (250)
235 2yz2_A Putative ABC transporte 90.0 0.12 4.2E-06 53.6 2.5 23 49-71 35-57 (266)
236 1s96_A Guanylate kinase, GMP k 90.0 0.12 4.1E-06 52.1 2.4 23 49-71 18-40 (219)
237 1vma_A Cell division protein F 89.9 0.22 7.6E-06 52.9 4.5 57 141-200 235-291 (306)
238 2ihy_A ABC transporter, ATP-bi 89.9 0.13 4.3E-06 54.0 2.5 23 49-71 49-71 (279)
239 3kta_A Chromosome segregation 89.9 0.12 4.1E-06 49.5 2.1 22 49-70 28-49 (182)
240 3tau_A Guanylate kinase, GMP k 89.8 0.16 5.5E-06 50.3 3.1 22 49-70 10-31 (208)
241 2rcn_A Probable GTPase ENGC; Y 89.8 0.19 6.4E-06 54.8 3.8 23 49-71 217-239 (358)
242 3q5d_A Atlastin-1; G protein, 89.8 0.2 6.8E-06 56.2 4.1 24 47-70 67-90 (447)
243 3j25_A Tetracycline resistance 89.7 0.13 4.3E-06 60.3 2.5 113 49-170 4-134 (638)
244 3c8u_A Fructokinase; YP_612366 89.6 0.13 4.5E-06 50.8 2.2 22 49-70 24-45 (208)
245 3vqt_A RF-3, peptide chain rel 89.6 0.26 8.9E-06 56.6 5.0 114 48-170 32-167 (548)
246 3tr0_A Guanylate kinase, GMP k 89.6 0.14 4.7E-06 49.9 2.4 22 49-70 9-30 (205)
247 2qi9_C Vitamin B12 import ATP- 89.4 0.15 5.2E-06 52.5 2.7 26 49-75 28-53 (249)
248 1np6_A Molybdopterin-guanine d 89.4 0.17 5.8E-06 49.3 2.8 25 46-70 5-29 (174)
249 1zp6_A Hypothetical protein AT 89.4 0.18 6.1E-06 48.5 3.0 22 49-70 11-32 (191)
250 2zu0_C Probable ATP-dependent 89.3 0.15 5E-06 53.1 2.5 23 49-71 48-70 (267)
251 3a00_A Guanylate kinase, GMP k 89.3 0.15 5E-06 49.5 2.3 21 50-70 4-24 (186)
252 1z6g_A Guanylate kinase; struc 88.9 0.16 5.6E-06 50.8 2.4 22 49-70 25-46 (218)
253 1t9h_A YLOQ, probable GTPase E 88.9 0.089 3E-06 56.1 0.4 24 49-72 175-198 (307)
254 2oap_1 GSPE-2, type II secreti 88.7 0.17 5.7E-06 57.7 2.6 30 50-81 263-292 (511)
255 2qor_A Guanylate kinase; phosp 88.6 0.14 4.9E-06 50.3 1.7 24 47-70 12-35 (204)
256 1j8m_F SRP54, signal recogniti 88.4 0.61 2.1E-05 49.2 6.5 50 141-192 225-274 (297)
257 1ye8_A Protein THEP1, hypothet 88.1 0.2 6.8E-06 48.8 2.4 22 49-70 2-23 (178)
258 2bbs_A Cystic fibrosis transme 88.0 0.18 6.1E-06 53.2 2.1 23 49-71 66-88 (290)
259 3nh6_A ATP-binding cassette SU 88.0 0.16 5.4E-06 54.1 1.7 23 49-71 82-104 (306)
260 2ghi_A Transport protein; mult 87.9 0.26 8.8E-06 51.0 3.1 23 49-71 48-70 (260)
261 3asz_A Uridine kinase; cytidin 87.7 0.21 7E-06 49.1 2.1 22 49-70 8-29 (211)
262 2xxa_A Signal recognition part 87.4 1.2 4.1E-05 49.5 8.4 30 49-78 102-138 (433)
263 1f2t_A RAD50 ABC-ATPase; DNA d 87.4 0.29 1E-05 46.1 2.9 21 48-68 24-44 (149)
264 2f1r_A Molybdopterin-guanine d 87.2 0.15 5.3E-06 49.4 0.9 23 48-70 3-25 (171)
265 2j41_A Guanylate kinase; GMP, 87.0 0.27 9.2E-06 47.7 2.5 22 49-70 8-29 (207)
266 1kag_A SKI, shikimate kinase I 86.7 0.27 9.3E-06 46.4 2.4 22 49-70 6-27 (173)
267 2pjz_A Hypothetical protein ST 86.6 0.34 1.1E-05 50.3 3.1 25 49-75 32-56 (263)
268 1htw_A HI0065; nucleotide-bind 86.6 0.28 9.7E-06 46.9 2.4 25 49-75 35-59 (158)
269 2qm8_A GTPase/ATPase; G protei 86.3 0.28 9.5E-06 52.7 2.4 25 46-70 54-78 (337)
270 2it1_A 362AA long hypothetical 86.0 0.31 1.1E-05 53.1 2.6 23 49-71 31-53 (362)
271 1z47_A CYSA, putative ABC-tran 86.0 0.35 1.2E-05 52.5 3.0 23 49-71 43-65 (355)
272 3b85_A Phosphate starvation-in 85.9 0.28 9.5E-06 49.1 2.0 29 49-80 24-52 (208)
273 3tui_C Methionine import ATP-b 85.9 0.31 1.1E-05 53.1 2.6 23 49-71 56-78 (366)
274 2eyu_A Twitching motility prot 85.7 0.31 1.1E-05 50.4 2.4 22 49-70 27-48 (261)
275 2bbw_A Adenylate kinase 4, AK4 85.5 0.46 1.6E-05 48.0 3.5 25 48-72 28-55 (246)
276 2yyz_A Sugar ABC transporter, 85.5 0.38 1.3E-05 52.3 3.0 23 49-71 31-53 (359)
277 1g29_1 MALK, maltose transport 85.4 0.38 1.3E-05 52.5 3.0 23 49-71 31-53 (372)
278 2yv5_A YJEQ protein; hydrolase 85.4 0.49 1.7E-05 49.9 3.7 22 49-71 167-188 (302)
279 2v9p_A Replication protein E1; 85.3 0.33 1.1E-05 51.6 2.3 22 49-70 128-149 (305)
280 4a74_A DNA repair and recombin 85.3 0.43 1.5E-05 47.0 3.0 30 49-78 27-56 (231)
281 4eun_A Thermoresistant glucoki 85.3 0.35 1.2E-05 47.3 2.4 22 49-70 31-52 (200)
282 3lnc_A Guanylate kinase, GMP k 85.3 0.29 9.8E-06 49.0 1.8 22 49-70 29-51 (231)
283 3fvq_A Fe(3+) IONS import ATP- 85.3 0.37 1.3E-05 52.4 2.8 23 49-71 32-54 (359)
284 4gp7_A Metallophosphoesterase; 85.2 0.43 1.5E-05 45.6 3.0 20 49-68 11-30 (171)
285 4fn5_A EF-G 1, elongation fact 85.1 0.89 3E-05 53.8 6.2 115 48-169 14-151 (709)
286 3aez_A Pantothenate kinase; tr 85.1 0.34 1.2E-05 51.5 2.4 26 45-70 87-113 (312)
287 2yhs_A FTSY, cell division pro 84.9 0.76 2.6E-05 52.1 5.2 50 141-192 424-473 (503)
288 2bdt_A BH3686; alpha-beta prot 84.9 0.38 1.3E-05 46.3 2.4 20 50-69 5-24 (189)
289 1v43_A Sugar-binding transport 84.9 0.42 1.4E-05 52.2 3.0 23 49-71 39-61 (372)
290 3rlf_A Maltose/maltodextrin im 84.8 0.43 1.5E-05 52.4 3.0 23 49-71 31-53 (381)
291 1knq_A Gluconate kinase; ALFA/ 84.5 0.41 1.4E-05 45.4 2.4 22 49-70 10-31 (175)
292 3d31_A Sulfate/molybdate ABC t 84.4 0.36 1.2E-05 52.3 2.1 23 49-71 28-50 (348)
293 1xjc_A MOBB protein homolog; s 84.0 0.62 2.1E-05 45.2 3.4 24 47-70 4-27 (169)
294 3uie_A Adenylyl-sulfate kinase 83.6 0.46 1.6E-05 46.4 2.4 22 49-70 27-48 (200)
295 3kb2_A SPBC2 prophage-derived 83.5 0.57 1.9E-05 43.8 2.9 23 48-70 2-24 (173)
296 2i3b_A HCR-ntpase, human cance 83.5 0.47 1.6E-05 46.7 2.4 27 49-78 3-29 (189)
297 1oxx_K GLCV, glucose, ABC tran 83.4 0.3 1E-05 53.0 1.0 23 49-71 33-55 (353)
298 1lw7_A Transcriptional regulat 83.3 0.44 1.5E-05 51.4 2.3 23 49-71 172-194 (365)
299 3qf7_A RAD50; ABC-ATPase, ATPa 83.2 0.54 1.8E-05 51.0 2.9 24 45-68 21-44 (365)
300 2jeo_A Uridine-cytidine kinase 83.0 0.49 1.7E-05 47.9 2.4 26 45-70 22-48 (245)
301 4e22_A Cytidylate kinase; P-lo 82.9 0.53 1.8E-05 48.1 2.6 25 48-72 28-55 (252)
302 3qks_A DNA double-strand break 82.9 0.61 2.1E-05 46.1 2.9 21 48-68 24-44 (203)
303 1yqt_A RNAse L inhibitor; ATP- 82.6 0.75 2.6E-05 52.6 4.0 31 49-81 314-344 (538)
304 3jvv_A Twitching mobility prot 82.2 0.53 1.8E-05 51.0 2.4 22 49-70 125-146 (356)
305 3ozx_A RNAse L inhibitor; ATP 82.1 0.7 2.4E-05 52.9 3.5 30 49-80 296-325 (538)
306 2vp4_A Deoxynucleoside kinase; 81.9 0.57 1.9E-05 47.0 2.3 22 49-70 22-43 (230)
307 1sq5_A Pantothenate kinase; P- 81.6 0.54 1.8E-05 49.6 2.1 22 49-70 82-103 (308)
308 3gd7_A Fusion complex of cysti 81.6 0.69 2.3E-05 50.9 3.0 23 49-71 49-71 (390)
309 3euj_A Chromosome partition pr 81.5 0.55 1.9E-05 53.1 2.3 23 49-71 31-53 (483)
310 3r7w_B Gtpase2, GTP-binding pr 81.5 0.73 2.5E-05 49.5 3.1 26 49-75 1-26 (331)
311 2p67_A LAO/AO transport system 81.4 0.58 2E-05 50.1 2.3 25 46-70 55-79 (341)
312 1cke_A CK, MSSA, protein (cyti 81.4 0.68 2.3E-05 45.6 2.7 23 48-70 6-28 (227)
313 2qt1_A Nicotinamide riboside k 81.4 0.76 2.6E-05 44.9 3.0 31 40-70 13-44 (207)
314 3lw7_A Adenylate kinase relate 81.3 0.86 2.9E-05 42.3 3.2 20 48-67 2-21 (179)
315 3b9q_A Chloroplast SRP recepto 81.2 1.1 3.6E-05 47.5 4.2 40 140-179 231-270 (302)
316 3bk7_A ABC transporter ATP-bin 81.1 0.92 3.1E-05 52.7 4.0 31 49-81 384-414 (607)
317 1rj9_A FTSY, signal recognitio 81.0 0.63 2.1E-05 49.3 2.4 49 142-192 234-282 (304)
318 1yqt_A RNAse L inhibitor; ATP- 81.0 0.87 3E-05 52.1 3.7 23 49-71 49-71 (538)
319 1rz3_A Hypothetical protein rb 81.0 0.61 2.1E-05 45.7 2.1 22 49-70 24-45 (201)
320 1jjv_A Dephospho-COA kinase; P 80.7 0.86 2.9E-05 44.4 3.1 22 49-70 4-25 (206)
321 3b5x_A Lipid A export ATP-bind 80.6 0.79 2.7E-05 52.8 3.2 23 49-71 371-393 (582)
322 3p32_A Probable GTPase RV1496/ 80.6 0.76 2.6E-05 49.5 2.9 25 46-70 78-102 (355)
323 2if2_A Dephospho-COA kinase; a 80.6 0.64 2.2E-05 45.2 2.1 21 49-69 3-23 (204)
324 2npi_A Protein CLP1; CLP1-PCF1 80.6 0.63 2.2E-05 52.2 2.3 25 47-71 138-162 (460)
325 3t61_A Gluconokinase; PSI-biol 79.9 0.76 2.6E-05 44.7 2.4 23 48-70 19-41 (202)
326 3b60_A Lipid A export ATP-bind 79.7 0.69 2.3E-05 53.3 2.3 23 49-71 371-393 (582)
327 2yl4_A ATP-binding cassette SU 79.7 0.65 2.2E-05 53.7 2.1 23 49-71 372-394 (595)
328 2ewv_A Twitching motility prot 79.4 0.74 2.5E-05 50.1 2.3 22 49-70 138-159 (372)
329 3qkt_A DNA double-strand break 79.4 0.83 2.8E-05 48.8 2.7 21 48-68 24-44 (339)
330 2jaq_A Deoxyguanosine kinase; 79.4 0.96 3.3E-05 43.5 2.9 22 49-70 2-23 (205)
331 3ec2_A DNA replication protein 79.2 1.1 3.8E-05 42.6 3.3 44 24-70 18-61 (180)
332 1p9r_A General secretion pathw 79.1 0.59 2E-05 51.8 1.5 22 49-70 169-190 (418)
333 3tqc_A Pantothenate kinase; bi 78.8 0.81 2.8E-05 48.9 2.4 22 49-70 94-115 (321)
334 3qf4_B Uncharacterized ABC tra 78.7 0.74 2.5E-05 53.3 2.2 23 49-71 383-405 (598)
335 3ozx_A RNAse L inhibitor; ATP 78.7 1.3 4.6E-05 50.6 4.3 30 49-80 27-56 (538)
336 2x8a_A Nuclear valosin-contain 78.7 1.3 4.3E-05 46.0 3.8 32 35-70 35-67 (274)
337 3bk7_A ABC transporter ATP-bin 78.6 1.1 3.9E-05 51.9 3.7 23 49-71 119-141 (607)
338 2kjq_A DNAA-related protein; s 78.5 0.76 2.6E-05 43.2 1.8 25 46-70 35-59 (149)
339 3qf4_A ABC transporter, ATP-bi 78.5 0.72 2.5E-05 53.3 2.0 23 49-71 371-393 (587)
340 3j16_B RLI1P; ribosome recycli 78.4 1.4 4.7E-05 51.3 4.3 29 49-79 105-133 (608)
341 1kht_A Adenylate kinase; phosp 78.3 1.1 3.8E-05 42.6 2.9 21 49-69 5-25 (192)
342 4a82_A Cystic fibrosis transme 78.1 0.66 2.2E-05 53.5 1.5 23 49-71 369-391 (578)
343 2og2_A Putative signal recogni 78.1 1.5 5.1E-05 47.6 4.2 40 140-179 288-327 (359)
344 1ly1_A Polynucleotide kinase; 78.0 1.1 3.9E-05 42.0 2.9 21 49-69 4-24 (181)
345 2ehv_A Hypothetical protein PH 77.9 0.92 3.1E-05 45.1 2.4 21 49-69 32-52 (251)
346 1qhx_A CPT, protein (chloramph 77.9 1.2 3.9E-05 42.2 2.9 22 49-70 5-26 (178)
347 3vaa_A Shikimate kinase, SK; s 77.9 0.94 3.2E-05 44.1 2.4 23 48-70 26-48 (199)
348 3e70_C DPA, signal recognition 77.8 0.9 3.1E-05 48.7 2.4 39 141-179 254-292 (328)
349 2o5v_A DNA replication and rep 77.8 0.89 3E-05 49.4 2.4 23 48-70 27-49 (359)
350 1e69_A Chromosome segregation 77.8 0.93 3.2E-05 48.0 2.5 23 48-70 25-47 (322)
351 3auy_A DNA double-strand break 77.7 1 3.4E-05 48.8 2.7 21 48-68 26-46 (371)
352 1odf_A YGR205W, hypothetical 3 77.6 1.9 6.4E-05 45.3 4.7 23 48-70 32-54 (290)
353 1w1w_A Structural maintenance 77.5 0.91 3.1E-05 50.1 2.4 23 49-71 28-50 (430)
354 1nij_A Hypothetical protein YJ 77.3 0.75 2.6E-05 48.8 1.6 26 46-71 3-28 (318)
355 1nks_A Adenylate kinase; therm 77.3 1.1 3.9E-05 42.5 2.7 22 49-70 3-24 (194)
356 1ixz_A ATP-dependent metallopr 76.6 1.6 5.5E-05 44.0 3.7 22 49-70 51-72 (254)
357 3iij_A Coilin-interacting nucl 76.5 1.2 4.2E-05 42.3 2.7 27 46-72 10-39 (180)
358 1gtv_A TMK, thymidylate kinase 76.2 0.71 2.4E-05 45.0 0.9 22 49-70 2-23 (214)
359 2v54_A DTMP kinase, thymidylat 75.8 1.4 4.8E-05 42.5 2.9 22 49-70 6-27 (204)
360 4aby_A DNA repair protein RECN 75.8 0.46 1.6E-05 51.8 -0.7 23 48-70 61-83 (415)
361 2pez_A Bifunctional 3'-phospho 75.5 1.2 4.2E-05 42.3 2.4 22 49-70 7-28 (179)
362 2rhm_A Putative kinase; P-loop 75.5 1.4 4.7E-05 42.1 2.7 21 49-69 7-27 (193)
363 3j16_B RLI1P; ribosome recycli 75.4 1.6 5.4E-05 50.8 3.7 22 50-71 381-402 (608)
364 2plr_A DTMP kinase, probable t 75.1 1.5 5.1E-05 42.4 2.9 22 49-70 6-27 (213)
365 2z0h_A DTMP kinase, thymidylat 74.4 1.6 5.6E-05 41.7 3.0 21 50-70 3-23 (197)
366 3cm0_A Adenylate kinase; ATP-b 73.8 1.7 5.9E-05 41.3 2.9 20 49-68 6-25 (186)
367 3trf_A Shikimate kinase, SK; a 73.7 1.9 6.6E-05 40.9 3.3 22 47-68 5-26 (185)
368 1qhl_A Protein (cell division 73.6 0.34 1.2E-05 49.3 -2.2 22 50-71 30-51 (227)
369 1iy2_A ATP-dependent metallopr 73.4 2.2 7.4E-05 43.8 3.8 22 49-70 75-96 (278)
370 1y63_A LMAJ004144AAA protein; 73.3 2 6.8E-05 41.2 3.3 23 48-70 11-33 (184)
371 1via_A Shikimate kinase; struc 73.1 1.8 6.3E-05 40.9 3.0 23 48-70 5-27 (175)
372 1nn5_A Similar to deoxythymidy 73.0 1.7 5.8E-05 42.2 2.7 21 49-69 11-31 (215)
373 2w0m_A SSO2452; RECA, SSPF, un 73.0 1.5 5.2E-05 42.8 2.4 22 49-70 25-46 (235)
374 2yvu_A Probable adenylyl-sulfa 72.6 1.9 6.5E-05 41.2 2.9 22 49-70 15-36 (186)
375 2wwf_A Thymidilate kinase, put 72.0 1.8 6.3E-05 41.9 2.7 21 49-69 12-32 (212)
376 2pbr_A DTMP kinase, thymidylat 71.6 2.1 7.1E-05 40.7 3.0 21 49-69 2-22 (195)
377 3fb4_A Adenylate kinase; psych 71.4 2.2 7.6E-05 41.7 3.2 21 49-69 2-22 (216)
378 1vht_A Dephospho-COA kinase; s 71.1 2.1 7.2E-05 42.0 2.9 21 49-69 6-26 (218)
379 2iyv_A Shikimate kinase, SK; t 71.0 2.1 7.3E-05 40.6 2.9 21 48-68 3-23 (184)
380 1e6c_A Shikimate kinase; phosp 70.9 2.2 7.6E-05 39.9 2.9 22 48-69 3-24 (173)
381 2iw3_A Elongation factor 3A; a 70.7 1.2 4.2E-05 54.4 1.3 29 49-79 701-729 (986)
382 2c95_A Adenylate kinase 1; tra 70.6 2.3 7.9E-05 40.5 3.0 22 48-69 10-31 (196)
383 2pt5_A Shikimate kinase, SK; a 70.4 2.3 8E-05 39.6 2.9 21 49-69 2-22 (168)
384 1cr0_A DNA primase/helicase; R 70.1 1.7 5.9E-05 44.9 2.1 22 49-70 37-58 (296)
385 3dl0_A Adenylate kinase; phosp 70.1 2.5 8.4E-05 41.4 3.2 21 49-69 2-22 (216)
386 1tev_A UMP-CMP kinase; ploop, 69.5 2.5 8.4E-05 40.1 2.9 21 49-69 5-25 (196)
387 3ake_A Cytidylate kinase; CMP 69.4 2.3 7.8E-05 41.0 2.7 22 48-69 3-24 (208)
388 4ido_A Atlastin-1; GTPase, GTP 69.3 3.2 0.00011 46.5 4.2 21 48-68 68-88 (457)
389 2chg_A Replication factor C sm 69.1 4.9 0.00017 38.2 5.1 38 27-70 24-61 (226)
390 1uf9_A TT1252 protein; P-loop, 68.9 2.4 8.1E-05 40.7 2.7 23 48-70 9-31 (203)
391 3nwj_A ATSK2; P loop, shikimat 68.8 2.1 7.1E-05 44.0 2.4 23 47-69 48-70 (250)
392 1qf9_A UMP/CMP kinase, protein 68.6 2.5 8.4E-05 40.0 2.7 21 49-69 8-28 (194)
393 1yrb_A ATP(GTP)binding protein 68.4 3.3 0.00011 41.5 3.8 32 45-76 12-48 (262)
394 2bwj_A Adenylate kinase 5; pho 68.4 2.5 8.4E-05 40.4 2.7 22 48-69 13-34 (199)
395 2vli_A Antibiotic resistance p 68.1 2.1 7.2E-05 40.4 2.1 20 49-68 7-26 (183)
396 1m7g_A Adenylylsulfate kinase; 67.9 2.3 7.7E-05 41.7 2.4 22 49-70 27-48 (211)
397 1ukz_A Uridylate kinase; trans 67.6 2.8 9.6E-05 40.5 3.0 22 48-69 16-37 (203)
398 1zd8_A GTP:AMP phosphotransfer 67.0 2.7 9.2E-05 41.7 2.7 22 48-69 8-29 (227)
399 1gvn_B Zeta; postsegregational 67.0 2.7 9.2E-05 43.8 2.8 45 24-70 11-56 (287)
400 2cdn_A Adenylate kinase; phosp 66.6 3 0.0001 40.3 2.9 21 49-69 22-42 (201)
401 1zak_A Adenylate kinase; ATP:A 66.6 2.8 9.5E-05 41.3 2.7 22 48-69 6-27 (222)
402 1svm_A Large T antigen; AAA+ f 66.3 2.4 8.3E-05 46.3 2.4 22 49-70 171-192 (377)
403 1jbk_A CLPB protein; beta barr 66.2 3.2 0.00011 38.6 2.9 23 48-70 44-66 (195)
404 1fnn_A CDC6P, cell division co 65.7 4.4 0.00015 42.9 4.3 24 47-70 44-67 (389)
405 3g5u_A MCG1178, multidrug resi 65.7 2.3 7.7E-05 53.8 2.3 28 49-78 418-445 (1284)
406 1n0w_A DNA repair protein RAD5 65.6 2.6 9E-05 41.6 2.4 22 49-70 26-47 (243)
407 4f4c_A Multidrug resistance pr 65.6 2.3 7.7E-05 53.9 2.2 28 49-78 446-473 (1321)
408 3a4m_A L-seryl-tRNA(SEC) kinas 65.2 3.2 0.00011 42.3 2.9 22 48-69 5-26 (260)
409 4f4c_A Multidrug resistance pr 65.2 2.8 9.5E-05 53.1 2.9 22 49-70 1107-1128(1321)
410 2cvh_A DNA repair and recombin 65.2 2.8 9.5E-05 40.7 2.4 21 49-69 22-42 (220)
411 3r20_A Cytidylate kinase; stru 64.9 3 0.0001 42.5 2.6 20 49-68 11-30 (233)
412 3tmk_A Thymidylate kinase; pho 64.9 1.7 5.9E-05 43.7 0.8 33 49-84 7-39 (216)
413 1e4v_A Adenylate kinase; trans 64.8 3.4 0.00012 40.5 2.9 21 49-69 2-22 (214)
414 1zu4_A FTSY; GTPase, signal re 63.7 6 0.00021 42.0 4.8 49 142-192 241-289 (320)
415 4tmk_A Protein (thymidylate ki 63.6 1.5 5.3E-05 43.8 0.1 22 49-70 5-26 (213)
416 1sxj_E Activator 1 40 kDa subu 63.5 3 0.0001 43.9 2.4 25 46-70 35-59 (354)
417 2xb4_A Adenylate kinase; ATP-b 63.1 3.8 0.00013 40.6 2.9 21 49-69 2-22 (223)
418 4eaq_A DTMP kinase, thymidylat 62.6 3.9 0.00013 41.1 2.9 22 49-70 28-49 (229)
419 1q3t_A Cytidylate kinase; nucl 62.6 3.3 0.00011 41.4 2.4 22 48-69 17-38 (236)
420 1in4_A RUVB, holliday junction 62.4 3.5 0.00012 43.7 2.7 25 46-70 50-74 (334)
421 2dpy_A FLII, flagellum-specifi 62.3 3.1 0.00011 46.3 2.3 23 49-71 159-181 (438)
422 1aky_A Adenylate kinase; ATP:A 62.3 4 0.00014 40.1 2.9 22 48-69 5-26 (220)
423 2ze6_A Isopentenyl transferase 62.3 3.3 0.00011 42.2 2.4 22 49-70 3-24 (253)
424 1a5t_A Delta prime, HOLB; zinc 62.2 26 0.00088 36.9 9.5 40 46-85 22-64 (334)
425 2px0_A Flagellar biosynthesis 61.8 3.1 0.00011 43.7 2.1 22 49-70 107-128 (296)
426 2qen_A Walker-type ATPase; unk 61.7 11 0.00038 38.9 6.4 35 28-70 20-54 (350)
427 2p5t_B PEZT; postsegregational 61.6 3.1 0.00011 42.2 2.0 27 44-70 28-55 (253)
428 2obl_A ESCN; ATPase, hydrolase 61.5 3.3 0.00011 44.5 2.3 23 49-71 73-95 (347)
429 1tue_A Replication protein E1; 61.2 7.9 0.00027 38.9 4.8 40 23-70 39-81 (212)
430 1zuh_A Shikimate kinase; alpha 60.6 4.7 0.00016 37.6 2.9 24 46-69 6-29 (168)
431 1uj2_A Uridine-cytidine kinase 60.5 4.4 0.00015 40.9 3.0 22 48-69 23-44 (252)
432 3cr8_A Sulfate adenylyltranfer 60.5 2.6 8.7E-05 48.4 1.3 22 49-70 371-392 (552)
433 1njg_A DNA polymerase III subu 59.8 12 0.00041 35.8 5.9 37 28-70 31-68 (250)
434 2f6r_A COA synthase, bifunctio 59.5 4.3 0.00015 42.0 2.7 20 49-68 77-96 (281)
435 1ltq_A Polynucleotide kinase; 59.1 4.7 0.00016 41.5 2.9 21 49-69 4-24 (301)
436 3syl_A Protein CBBX; photosynt 58.9 9.7 0.00033 39.1 5.3 33 38-70 58-90 (309)
437 1nlf_A Regulatory protein REPA 58.8 3.8 0.00013 42.0 2.1 22 49-70 32-53 (279)
438 3tlx_A Adenylate kinase 2; str 58.7 4.9 0.00017 40.5 2.9 21 49-69 31-51 (243)
439 3g5u_A MCG1178, multidrug resi 58.6 3.8 0.00013 51.7 2.5 23 49-71 1061-1083(1284)
440 1ak2_A Adenylate kinase isoenz 58.5 5.1 0.00017 39.9 2.9 23 48-70 17-39 (233)
441 3be4_A Adenylate kinase; malar 58.4 4.8 0.00016 39.6 2.7 22 48-69 6-27 (217)
442 2grj_A Dephospho-COA kinase; T 58.0 5.4 0.00018 39.1 3.0 24 46-69 11-34 (192)
443 1sxj_C Activator 1 40 kDa subu 57.3 4.8 0.00016 42.5 2.7 38 27-70 32-69 (340)
444 1lv7_A FTSH; alpha/beta domain 56.6 4.7 0.00016 40.5 2.4 22 49-70 47-68 (257)
445 2p65_A Hypothetical protein PF 56.6 4.6 0.00016 37.5 2.1 24 47-70 43-66 (187)
446 2iw3_A Elongation factor 3A; a 55.8 4.5 0.00015 49.5 2.4 21 49-69 463-483 (986)
447 3bos_A Putative DNA replicatio 55.4 6.9 0.00024 38.0 3.3 39 26-70 37-75 (242)
448 3ux8_A Excinuclease ABC, A sub 55.1 4.2 0.00014 47.5 1.9 20 49-68 350-369 (670)
449 4ad8_A DNA repair protein RECN 54.5 2.6 8.7E-05 47.7 -0.1 22 49-70 62-83 (517)
450 3exa_A TRNA delta(2)-isopenten 54.4 7.4 0.00025 41.5 3.5 23 48-70 4-26 (322)
451 2ga8_A Hypothetical 39.9 kDa p 54.2 13 0.00045 40.2 5.5 25 46-70 23-47 (359)
452 3h4m_A Proteasome-activating n 54.2 9.6 0.00033 38.7 4.3 32 36-70 43-74 (285)
453 1a7j_A Phosphoribulokinase; tr 54.1 4.5 0.00015 42.2 1.8 23 48-70 6-28 (290)
454 1p5z_B DCK, deoxycytidine kina 52.8 5.3 0.00018 40.6 2.0 23 48-70 25-47 (263)
455 3m6a_A ATP-dependent protease 52.7 9.4 0.00032 43.5 4.3 28 43-70 104-131 (543)
456 2ocp_A DGK, deoxyguanosine kin 52.5 6.7 0.00023 39.1 2.7 22 49-70 4-25 (241)
457 4hlc_A DTMP kinase, thymidylat 51.9 4.9 0.00017 39.8 1.5 21 50-70 5-25 (205)
458 2fna_A Conserved hypothetical 51.9 12 0.00042 38.6 4.8 23 48-70 31-53 (357)
459 2w58_A DNAI, primosome compone 51.7 7.8 0.00027 37.2 3.0 44 25-70 34-77 (202)
460 3a8t_A Adenylate isopentenyltr 51.1 11 0.00039 40.4 4.3 40 48-87 41-90 (339)
461 3zvl_A Bifunctional polynucleo 50.8 7.4 0.00025 42.7 2.9 21 49-69 260-280 (416)
462 2qz4_A Paraplegin; AAA+, SPG7, 50.8 18 0.00063 35.8 5.7 23 48-70 40-62 (262)
463 1ls1_A Signal recognition part 50.2 6.7 0.00023 41.0 2.3 22 49-70 100-121 (295)
464 1bif_A 6-phosphofructo-2-kinas 50.0 7.7 0.00026 43.2 2.9 22 49-70 41-62 (469)
465 2ius_A DNA translocase FTSK; n 50.0 7.6 0.00026 44.1 2.8 24 46-69 166-189 (512)
466 2h92_A Cytidylate kinase; ross 49.8 8.6 0.00029 37.4 2.9 21 49-69 5-25 (219)
467 4edh_A DTMP kinase, thymidylat 49.2 8.9 0.00031 38.1 3.0 22 49-70 8-29 (213)
468 2qmh_A HPR kinase/phosphorylas 48.4 9.9 0.00034 38.0 3.1 23 48-70 35-57 (205)
469 3d3q_A TRNA delta(2)-isopenten 48.3 8.9 0.00031 41.2 3.0 22 49-70 9-30 (340)
470 2qby_A CDC6 homolog 1, cell di 47.1 7.5 0.00026 40.8 2.1 24 47-70 45-68 (386)
471 3lv8_A DTMP kinase, thymidylat 46.5 9.6 0.00033 38.7 2.7 35 49-84 29-65 (236)
472 3ld9_A DTMP kinase, thymidylat 46.5 10 0.00035 38.1 3.0 22 49-70 23-44 (223)
473 1c9k_A COBU, adenosylcobinamid 46.4 10 0.00034 37.1 2.7 20 50-69 2-21 (180)
474 3n70_A Transport activator; si 46.3 28 0.00097 31.6 5.8 21 50-70 27-47 (145)
475 2dr3_A UPF0273 protein PH0284; 46.2 9.8 0.00033 37.4 2.7 21 49-69 25-45 (247)
476 3v9p_A DTMP kinase, thymidylat 46.1 8.7 0.0003 38.7 2.3 22 49-70 27-48 (227)
477 2dhr_A FTSH; AAA+ protein, hex 45.7 19 0.00064 40.7 5.2 25 46-70 62-87 (499)
478 3ux8_A Excinuclease ABC, A sub 44.7 9 0.00031 44.7 2.5 16 49-64 46-61 (670)
479 3t15_A Ribulose bisphosphate c 44.7 18 0.00063 37.3 4.7 27 44-70 32-59 (293)
480 2ce7_A Cell division protein F 44.5 20 0.0007 40.2 5.2 22 49-70 51-72 (476)
481 4ag6_A VIRB4 ATPase, type IV s 44.2 11 0.00038 40.6 3.0 26 45-70 33-58 (392)
482 2r62_A Cell division protease 43.8 18 0.00061 36.3 4.3 21 50-70 47-67 (268)
483 1ewq_A DNA mismatch repair pro 43.4 9.2 0.00031 45.6 2.3 27 48-74 577-603 (765)
484 3b9p_A CG5977-PA, isoform A; A 43.2 10 0.00035 38.8 2.3 23 48-70 55-77 (297)
485 1pzn_A RAD51, DNA repair and r 42.9 9.5 0.00033 40.8 2.1 23 49-71 133-155 (349)
486 1iqp_A RFCS; clamp loader, ext 42.9 28 0.00095 35.6 5.7 37 28-70 33-69 (327)
487 1sxj_B Activator 1 37 kDa subu 42.5 26 0.00091 35.6 5.4 37 28-70 29-65 (323)
488 1wb9_A DNA mismatch repair pro 42.4 9.9 0.00034 45.6 2.4 23 49-71 609-631 (800)
489 3thx_A DNA mismatch repair pro 42.1 13 0.00046 45.2 3.5 27 49-76 664-698 (934)
490 1tf7_A KAIC; homohexamer, hexa 42.1 9.7 0.00033 43.0 2.1 28 49-78 41-70 (525)
491 1l8q_A Chromosomal replication 41.8 11 0.00037 39.3 2.3 45 22-70 16-60 (324)
492 3szr_A Interferon-induced GTP- 41.5 2.4E+02 0.0081 32.3 13.8 61 618-679 532-598 (608)
493 3pxg_A Negative regulator of g 41.3 26 0.00089 38.9 5.5 37 28-70 188-224 (468)
494 1sxj_D Activator 1 41 kDa subu 41.1 13 0.00043 38.8 2.7 25 46-70 57-81 (353)
495 1tf7_A KAIC; homohexamer, hexa 40.6 10 0.00036 42.7 2.1 23 49-71 283-305 (525)
496 1ko7_A HPR kinase/phosphatase; 40.4 12 0.0004 39.9 2.3 22 49-70 146-167 (314)
497 3crm_A TRNA delta(2)-isopenten 39.9 14 0.00049 39.3 2.9 22 49-70 7-28 (323)
498 2iut_A DNA translocase FTSK; n 39.6 14 0.00049 42.5 3.0 23 47-69 214-236 (574)
499 3upu_A ATP-dependent DNA helic 39.4 30 0.001 38.2 5.5 45 19-70 24-68 (459)
500 2ffh_A Protein (FFH); SRP54, s 39.0 13 0.00043 41.3 2.4 22 49-70 100-121 (425)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=7.3e-107 Score=957.10 Aligned_cols=644 Identities=39% Similarity=0.601 Sum_probs=515.7
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCccccccc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f 101 (767)
.+++|+++|+|||.|+.+|.+..++||+|||||+||+|||||||+|+|.+|||+++|+|||||+++++.+.+ .+|++|
T Consensus 26 ~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~--~~~~~~ 103 (772)
T 3zvr_A 26 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAEF 103 (772)
T ss_dssp GGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS--SCEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC--cchhhe
Confidence 489999999999999999999899999999999999999999999999999999999999999999999885 489999
Q ss_pred ccCCCCcccChhHHHHHHHHHHhhhhcCCc--------------------------------------------------
Q 004228 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNK-------------------------------------------------- 131 (767)
Q Consensus 102 ~~~pg~~~~d~~~i~~~i~~~t~~~~g~n~-------------------------------------------------- 131 (767)
++.+|+.++++++++.+|+.+++...|.|+
T Consensus 104 l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~y 183 (772)
T 3zvr_A 104 LHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQF 183 (772)
T ss_dssp STTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHH
T ss_pred eccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999988776543211
Q ss_pred ----------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhh
Q 004228 132 ----------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 201 (767)
Q Consensus 132 ----------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~ 201 (767)
|++|+.++++++.+.+++++++.|.++|+|+||+|++++++...+++.++.+++++||+.|+++|+.+..
T Consensus 184 i~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~ 263 (772)
T 3zvr_A 184 VTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 263 (772)
T ss_dssp HTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESS
T ss_pred HhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccc
Confidence 7788999999999999999999999999999999999998888888888889999999999999998876
Q ss_pred cccCHHHHHHHHHHhhccCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHcCCCCCChh-
Q 004228 202 FNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKA- 280 (767)
Q Consensus 202 ~~~s~~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~Ls~iL~~hI~~~LP~l~~~I~~~L~~~~~eL~~lG~~~~~~~- 280 (767)
.-..+.++...|++||..+|+|..+.+++|+..|++.|++.|..||+++||.|+.+|+.+|..++.+|++||++++++.
T Consensus 264 GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~~~~~~~~ 343 (772)
T 3zvr_A 264 GKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPA 343 (772)
T ss_dssp SSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSS
T ss_pred cchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCCCCCCChH
Confidence 6668999999999999999999888999999999999999999999999999999999999999999999998776553
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCcccCCcccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCCCCCC
Q 004228 281 GQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALF 360 (767)
Q Consensus 281 ~~~~~Ll~~i~~F~~~~~~~i~G~~~~~~~~~l~ggaRi~~if~~~F~~~l~~~~p~~~l~~~dI~~~I~n~~G~~~p~f 360 (767)
++..+|++++++|++.|.++|+|.+++.++.+|+||+||+++|++.|+..+..+++.+.+++++|+++|+|++|+++++|
T Consensus 344 ~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~lf 423 (772)
T 3zvr_A 344 RKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLF 423 (772)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCCCCCC
Confidence 57789999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 004228 361 VPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEME 440 (767)
Q Consensus 361 vp~~~fe~Lvr~qI~~l~~Pa~~c~~~V~~el~~i~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E 440 (767)
+|+.+||.||++||++|++||++|++.|+++|.+++++|. .+|.|||+|++++.+++.++|++++.+|+++|..||+||
T Consensus 424 ~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~-~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~E 502 (772)
T 3zvr_A 424 TPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS-EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIE 502 (772)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG-GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999995 789999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCccchHHHHHHHHhhhhcCCCCCcccCCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCC---------
Q 004228 441 MDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQG--------- 511 (767)
Q Consensus 441 ~~yInT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--------- 511 (767)
++||||+||||+|+++|+..+.++.+++..+.. ....+..++|+..++.+++.+++
T Consensus 503 ~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 567 (772)
T 3zvr_A 503 LAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQ---------------DEILVIRKGWLTINNIGIMKGGSKEYWFVLTA 567 (772)
T ss_dssp HTCCCTTCTTCCCC------------------------------------CCEEEEEEEEESSSCCC---CCEEEEEEES
T ss_pred cCCCCCCChhhhchHHHHHHHHHHhhcccccCC---------------ccccceeeeeeeecccccccCCCccceeeccc
Confidence 999999999999999888665443322110000 00113455665555555543321
Q ss_pred -----CCcchhhccc--CCC-----CCCCCCCC---ccccccCCCCCCCCCCCCcCCCCCCCCCchhhhhHHhh-hhcCC
Q 004228 512 -----VRPTVEVEKV--APA-----GNTSGSSW---GISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAM-IHLRE 575 (767)
Q Consensus 512 -----~~~~~~~~~~--~~~-----~~~~~~~~---g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~l~~ 575 (767)
++...+.+++ .+. ++...+|+ ++..+|+.. .++.+ |+.......++..++++.+.+. .++++
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 645 (772)
T 3zvr_A 568 ENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTE-QRNVY-KDYRQLELACETQEEVDSWKASFLRAGV 645 (772)
T ss_dssp SEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETT-SSCSB-TTBSEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred cccccccchhhhcccccccccccccchhhhccccccccccccCCc-ccccc-chhhhhhhhccccccchhhHHhhhhccc
Confidence 1122222221 111 11122333 333455543 34444 6666666666665555443322 34444
Q ss_pred CCc---------------cCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004228 576 PPT---------------ILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKL 640 (767)
Q Consensus 576 ~p~---------------~l~~~~~~s~~e~~Ei~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~L 640 (767)
+|+ .+......++++.+||++||+||+|||+||+|+|+|+|||+|||||||++|++||++|+++|
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~l 725 (772)
T 3zvr_A 646 YPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANL 725 (772)
T ss_dssp CBC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHH
T ss_pred CCccccccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 33333446778999999999999999999999999999999999999999999999999999
Q ss_pred hchhhHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcccCcccc
Q 004228 641 YRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDELPLEAD 685 (767)
Q Consensus 641 Y~~~~~~eLL~E~~~ia~kR~~l~~~l~~L~qA~~iL~ev~~~~~ 685 (767)
|.++++++||+|++++++||++|++|+++|++|+++|.+|+..+-
T Consensus 726 y~~~~~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~~~~ 770 (772)
T 3zvr_A 726 YSCGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTV 770 (772)
T ss_dssp HHTCCTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hcccCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999986543
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=6.7e-89 Score=796.59 Aligned_cols=518 Identities=28% Similarity=0.419 Sum_probs=425.8
Q ss_pred CCCCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCccccc
Q 004228 20 PLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYG 99 (767)
Q Consensus 20 ~~~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~ 99 (767)
.++..+.++++ +.|.++.+|++..++||+|+|||+|||||||||++|+|. +.|+++|.||++|..+++.+.+....|.
T Consensus 19 ~~~~~~r~ll~-~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~ 96 (608)
T 3szr_A 19 QYEEKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWR 96 (608)
T ss_dssp -CHHHHHHHHH-HHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCE
T ss_pred HHHHHHHHHHH-HHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccce
Confidence 35566677776 556788999999999999999999999999999999999 5699999999999998766543211221
Q ss_pred c-----------------------------------------------------cccCCCCcccCh---h-HHHHHHHHH
Q 004228 100 E-----------------------------------------------------FLHLPGKRFYDF---S-EIRREIQAQ 122 (767)
Q Consensus 100 ~-----------------------------------------------------f~~~pg~~~~d~---~-~i~~~i~~~ 122 (767)
. +++.||.....+ + ..+..+...
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~l 176 (608)
T 3szr_A 97 GKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTL 176 (608)
T ss_dssp EEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHH
T ss_pred eEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHH
Confidence 1 234455432211 1 234445555
Q ss_pred HhhhhcCC-c----cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCccc--HHHHHcCCCCCcccceEEEEeC
Q 004228 123 TDKEAGGN-K----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD--ARNLLLGKVIPLRLGYVGVVNR 195 (767)
Q Consensus 123 t~~~~g~n-~----V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd--~~~iL~g~~~~LklGy~~V~nr 195 (767)
...++... . |++++.|+++++++++++++||.|.|||||+||+|++++|+. +.+++.|+.++|++|||+|+||
T Consensus 177 i~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr 256 (608)
T 3szr_A 177 IKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCR 256 (608)
T ss_dssp HHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCS
T ss_pred HHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecC
Confidence 55544322 1 778999999999999999999999999999999999999985 5789999999999999999999
Q ss_pred ChhhhhcccCHHHHHHHHHHhhccCCCCCCccc--ccChhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHcC
Q 004228 196 SQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG 273 (767)
Q Consensus 196 sq~di~~~~s~~ea~~~E~~FF~~~~~~~~l~~--~~Gi~~L~~~Ls~iL~~hI~~~LP~l~~~I~~~L~~~~~eL~~lG 273 (767)
+|+|++.+.|+++|++.|++||.+||||+.+.+ ++||++|+++|+++|.+||+++||.|+.+|+..|.+++.||++||
T Consensus 257 ~~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg 336 (608)
T 3szr_A 257 GQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYG 336 (608)
T ss_dssp CTTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred chhhcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999998864 899999999999999999999999999999999999999999999
Q ss_pred CCCCC-hhhHHHHHHHHHHHHHHHHhhhccCCcccCCcccccccchHHHHHHHHHHHhhhhcC----CCCCCchHHHHHH
Q 004228 274 EITES-KAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVD----PCEDLTDDDIRTA 348 (767)
Q Consensus 274 ~~~~~-~~~~~~~Ll~~i~~F~~~~~~~i~G~~~~~~~~~l~ggaRi~~if~~~F~~~l~~~~----p~~~l~~~dI~~~ 348 (767)
+++++ ..+++.||++++++|++.++++++|.+.. ...++..+++|+.+|+ .+...++ +.....+++|+++
T Consensus 337 ~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~-~~~~~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~i~~~ 411 (608)
T 3szr_A 337 VDIPEDENEKMFFLIDKVNAFNQDITALMQGEETV-GEEDIRLFTRLRHEFH----KWSTIIENNFQEGHKILSRKIQKF 411 (608)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCC-CTTCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-CCccccHHHHHHHHHH----HHHHHhhhcccccchhHHHHHHHH
Confidence 98764 45789999999999999999999999852 2233334444555544 4433322 2334557889999
Q ss_pred HHhhcCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHhHhh
Q 004228 349 IQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEP 428 (767)
Q Consensus 349 I~n~~G~~~p~fvp~~~fe~Lvr~qI~~l~~Pa~~c~~~V~~el~~i~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~ 428 (767)
++|++|+++|+|+|+.+||.||++||++|++||++|++.|++++..++..++.++|.+||+|++++.++|.++++++..+
T Consensus 412 ~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~ 491 (608)
T 3szr_A 412 ENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQERE 491 (608)
T ss_dssp HHHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCccchHHHHHHHHhhhhcCCCCCcccCCCCCCCCCCCCcchhhhhHHHHHhhhccccc
Q 004228 429 SETMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMA 508 (767)
Q Consensus 429 a~~~i~~li~~E~~yInT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 508 (767)
|+++|.++|+||+.| ||+||+|. ..
T Consensus 492 a~~~i~~li~mE~~~-~~~d~~~~--------------~~---------------------------------------- 516 (608)
T 3szr_A 492 GEKLIRLHFQMEQIV-YGAFQSSS--------------AT---------------------------------------- 516 (608)
T ss_dssp HHHHHHHHHHHHHHC-CCC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhcc-ccCCcccc--------------CC----------------------------------------
Confidence 999999999999874 78777652 00
Q ss_pred CCCCCcchhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCcCCCCCCCCCchhhhhHHhhhhcCCCCccCCCCCCCch
Q 004228 509 DQGVRPTVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSE 588 (767)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~ 588 (767)
. .+
T Consensus 517 -------------------~---------------------------------------------------------~~- 519 (608)
T 3szr_A 517 -------------------D---------------------------------------------------------SS- 519 (608)
T ss_dssp ------------------------------------------------------------------------------C-
T ss_pred -------------------C---------------------------------------------------------cc-
Confidence 0 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHHHHH
Q 004228 589 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLR 668 (767)
Q Consensus 589 ~e~~Ei~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~ia~kR~~l~~~l~ 668 (767)
..| |+.+|+|||+||+|||+|+|||+|||||||.+++.||++|++.||+.+.+++||+|+|++++||++|+++++
T Consensus 520 --~~e---i~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~~~~ll~E~~~~~~~R~~l~~~~~ 594 (608)
T 3szr_A 520 --MEE---IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLA 594 (608)
T ss_dssp --TTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred --HHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhCCCHHHHHHHHHHHHHHH
Confidence 013 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccC
Q 004228 669 VLQQAFRTLDELP 681 (767)
Q Consensus 669 ~L~qA~~iL~ev~ 681 (767)
+|++|.++|.+|+
T Consensus 595 ~L~~A~~~l~~~~ 607 (608)
T 3szr_A 595 RLTQARRRLAQFP 607 (608)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999987
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=1.4e-43 Score=388.78 Aligned_cols=258 Identities=47% Similarity=0.749 Sum_probs=226.1
Q ss_pred CchHHHHHHHHHHHHHhCCCC--------CCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCC
Q 004228 23 GSVIPLVNKLQDIFAQLGSQS--------TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT 94 (767)
Q Consensus 23 ~~~i~lin~L~d~~~~~G~~~--------~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~ 94 (767)
+++||++|+||+++..+|... .++||+|||||+||||||||||+|+|.+|+|+++|+|||+|+++++.+.+.
T Consensus 2 ~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~ 81 (360)
T 3t34_A 2 ENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDD 81 (360)
T ss_dssp CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSS
T ss_pred hhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCC
Confidence 689999999999999998532 369999999999999999999999999999999999999999999988754
Q ss_pred -cccccccccCCCCcccChhHHHHHHHHHHhhhhcCCc------------------------------------------
Q 004228 95 -DEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNK------------------------------------------ 131 (767)
Q Consensus 95 -~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~g~n~------------------------------------------ 131 (767)
...|+.|.+.++..|.||+.++.++..++....|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~ 161 (360)
T 3t34_A 82 GTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKD 161 (360)
T ss_dssp CSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHH
T ss_pred cccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHH
Confidence 3578899999999999999999999887765443210
Q ss_pred ------------------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEE
Q 004228 132 ------------------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVV 193 (767)
Q Consensus 132 ------------------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~ 193 (767)
|.+++.|+.+++.+++++++++.|.|||+|+||+|++++++.+.+++.+...++++||+.|.
T Consensus 162 ~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~ 241 (360)
T 3t34_A 162 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVV 241 (360)
T ss_dssp HHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEEC
T ss_pred HHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEE
Confidence 44778899999999999999999999999999999999998889999999999999999999
Q ss_pred eCChhhhhcccCHHHHHHHHHHhhccCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHcC
Q 004228 194 NRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG 273 (767)
Q Consensus 194 nrsq~di~~~~s~~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~Ls~iL~~hI~~~LP~l~~~I~~~L~~~~~eL~~lG 273 (767)
|+++++++...++.+++..|+.||.+||+|+.+..++|+++|+++|+++|.+||+++||.|+.+|+.++.+++++|++||
T Consensus 242 ~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~lg 321 (360)
T 3t34_A 242 NRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLG 321 (360)
T ss_dssp CCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC-----
T ss_pred ECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred CCCCChh
Q 004228 274 EITESKA 280 (767)
Q Consensus 274 ~~~~~~~ 280 (767)
++++++.
T Consensus 322 ~~~~~~~ 328 (360)
T 3t34_A 322 KPIAHGT 328 (360)
T ss_dssp -------
T ss_pred CCCCCCH
Confidence 9988654
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=3.1e-41 Score=369.52 Aligned_cols=277 Identities=55% Similarity=0.861 Sum_probs=251.0
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCccccccc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f 101 (767)
.+++++++|+|+|.|+.+|....+++|+|+|||++|||||||||+|+|.+|+|+++|+|||+|+++++.+.+ .+|++|
T Consensus 6 ~~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~--~~~~~~ 83 (353)
T 2x2e_A 6 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT--TEYAEF 83 (353)
T ss_dssp CCSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS--SCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC--ccceee
Confidence 578999999999999999998889999999999999999999999999999999999999999999999874 489999
Q ss_pred ccCCCCcccChhHHHHHHHHHHhhhh-----------------------------cC--------C-----c--------
Q 004228 102 LHLPGKRFYDFSEIRREIQAQTDKEA-----------------------------GG--------N-----K-------- 131 (767)
Q Consensus 102 ~~~pg~~~~d~~~i~~~i~~~t~~~~-----------------------------g~--------n-----~-------- 131 (767)
+|.+|+.+++++.++.+|+.+++++. |. . .
T Consensus 84 ~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 163 (353)
T 2x2e_A 84 LHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQF 163 (353)
T ss_dssp TTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHH
T ss_pred eecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHH
Confidence 99999999999999888876655431 10 0 0
Q ss_pred ----------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhh
Q 004228 132 ----------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 201 (767)
Q Consensus 132 ----------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~ 201 (767)
|++++.|+++++++++++.+|+.|.|+|+|+||+|++++++++.+++.++.+++++||+.|.++|+.+..
T Consensus 164 ~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~ 243 (353)
T 2x2e_A 164 VTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 243 (353)
T ss_dssp HTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHH
T ss_pred HcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCccccc
Confidence 6788999999999999999999999999999999999988877888999999999999999999999877
Q ss_pred cccCHHHHHHHHHHhhccCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHcCCCCCChh-
Q 004228 202 FNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKA- 280 (767)
Q Consensus 202 ~~~s~~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~Ls~iL~~hI~~~LP~l~~~I~~~L~~~~~eL~~lG~~~~~~~- 280 (767)
.-..+.++...|..||..++.|+.+.+++|+..|++.|++.|..||+++||.|+.+|+.++..++.+|++||+.++++.
T Consensus 244 ~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~~~~~~~~ 323 (353)
T 2x2e_A 244 GKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKHG 323 (353)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSS
T ss_pred ccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCchh
Confidence 7678889999999999999999999999999999999999999999999999999999999999999999998766553
Q ss_pred h--HHHHHHHHHHHHHHHHhhh
Q 004228 281 G--QGALLLNILSKYSEAFSSM 300 (767)
Q Consensus 281 ~--~~~~Ll~~i~~F~~~~~~~ 300 (767)
. ++.+|++++++|++.|+..
T Consensus 324 ~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 324 TDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 2 4599999999999999753
No 5
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.5e-41 Score=351.31 Aligned_cols=264 Identities=17% Similarity=0.219 Sum_probs=194.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhccCCcccCCcccccccchHHHHHHHHHHHhhhhcCCCCCCch----HHHHHHHHhhcC
Q 004228 279 KAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTD----DDIRTAIQNATG 354 (767)
Q Consensus 279 ~~~~~~~Ll~~i~~F~~~~~~~i~G~~~~~~~~~l~ggaRi~~if~~~F~~~l~~~~p~~~l~~----~dI~~~I~n~~G 354 (767)
+.++..||+..|+.|.+.+.+++.|.... ..|++||...++..|.+|...++....... ++|....++++|
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~-----~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rG 77 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETV-----GEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRG 77 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecc-----cCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccC
Confidence 34688999999999999999999999853 237889999999999999877665443333 667777789999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHhHhhHHHHHH
Q 004228 355 PKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIG 434 (767)
Q Consensus 355 ~~~p~fvp~~~fe~Lvr~qI~~l~~Pa~~c~~~V~~el~~i~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~ 434 (767)
+++|||+|+.+||.||++||++|++||++|++.|+++|.+++.+++.++|.+||+|++.+.++|.+++.+|..+|+++|+
T Consensus 78 rELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~ 157 (271)
T 3ljb_A 78 RELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIR 157 (271)
T ss_dssp -----CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCccchHHHHHHHHhhhhcCCCCCcccCCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCCCc
Q 004228 435 HIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRP 514 (767)
Q Consensus 435 ~li~~E~~yInT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 514 (767)
++|+||+ ++||+|..|.++.+.+ +. .+. ++++.
T Consensus 158 ~~~~mE~-~vytqD~~Y~~~l~~~-------r~----------~~~-~~~~~---------------------------- 190 (271)
T 3ljb_A 158 LHFQMEQ-IVYCQDQVYRGALQKV-------RE----------KEL-EEEKK---------------------------- 190 (271)
T ss_dssp HHHHHHT-SCC---------------------------------------------------------------------
T ss_pred HHHHHhc-ccccCCHHHHHHHHHH-------HH----------HHh-ccccc----------------------------
Confidence 9999999 7999999998654221 00 000 00000
Q ss_pred chhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCcCCCCCCCCCchhhhhHHhhhhcCCCCccCCCCCCCch-hHHHH
Q 004228 515 TVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSE-QENVE 593 (767)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~-~e~~E 593 (767)
.+ .. +.| +... ..+. ..+.|
T Consensus 191 -----~~-----~~-~~~-----~~~~-------------------------------------------~~~~~~~~~E 211 (271)
T 3ljb_A 191 -----KK-----SW-DFG-----AFQS-------------------------------------------SSATDSSMEE 211 (271)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred -----cc-----cc-ccc-----cccC-------------------------------------------CCCccchHHH
Confidence 00 00 000 0000 0001 11334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCCHHH
Q 004228 594 IAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEV 656 (767)
Q Consensus 594 i~~ir~Lv~SYF~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~~~i 656 (767)
|+.++.|||+||+|||+|+|||+||||||+.+++.||++|++.||+.+.+++||+|++++
T Consensus 212 ---i~~~l~sYf~i~~~rl~d~IP~~I~~~ll~~~~~~lQ~~ml~~l~~~~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 212 ---IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDT 271 (271)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCGGGHHHHTCCC---
T ss_pred ---HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHhcCCCCC
Confidence 557899999999999999999999999999999999999999999999999999999985
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=2.2e-32 Score=292.54 Aligned_cols=249 Identities=56% Similarity=0.937 Sum_probs=204.1
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCC------cc
Q 004228 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT------DE 96 (767)
Q Consensus 23 ~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~------~~ 96 (767)
+++|+++|+|+|+++.+|++ .+++|+|+|||.+|||||||||+|+|.+++|++.++|||+|+++++.+.+. ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~-~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~ 79 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQ 79 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC-TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCC
T ss_pred CchHHHHHHHHHHHHHcCCC-CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchh
Confidence 47899999999999999998 899999999999999999999999999999999999999999998887632 45
Q ss_pred cccccccCCCCcccChhHHHHHHHHHHhhhh-----------------------------cCC---------c-------
Q 004228 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEA-----------------------------GGN---------K------- 131 (767)
Q Consensus 97 ~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~-----------------------------g~n---------~------- 131 (767)
.|++|.+.|+..+.+|+++++++..+++++. |.. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 159 (315)
T 1jwy_B 80 EWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRR 159 (315)
T ss_dssp CEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHH
Confidence 8999999999999999998888877654322 110 0
Q ss_pred --------------cc-cCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCC
Q 004228 132 --------------VT-PANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 196 (767)
Q Consensus 132 --------------V~-~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrs 196 (767)
|+ +++.++.+++.+.+++.+++.|.++|+|+||+|+++.+.++.+.+.++..++++||+.|.+.+
T Consensus 160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 239 (315)
T 1jwy_B 160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRS 239 (315)
T ss_dssp HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCC
T ss_pred HHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCC
Confidence 33 357788888888999999999999999999999998776677888887778889999999999
Q ss_pred hhhhhcccCHHHHHHHHHHhhccCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHc
Q 004228 197 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 272 (767)
Q Consensus 197 q~di~~~~s~~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~Ls~iL~~hI~~~LP~l~~~I~~~L~~~~~eL~~l 272 (767)
...++.+..+.+....+.+||..+|+|..+..++|+..|...|.+.|..||+++||.++.+|+..|.+++++|++|
T Consensus 240 a~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 240 QEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315 (315)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred hhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 9988888899999999999999999998888899999999999999999999999999999999999999999876
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.97 E-value=1.2e-29 Score=268.93 Aligned_cols=239 Identities=61% Similarity=0.937 Sum_probs=202.3
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCccccccc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f 101 (767)
.+++++++++|+|.|+.+|.....++|+|+|||++|||||||||+|+|.+|+|+++++||++|+++++.+.. .+|++|
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~--~~~~~~ 78 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAEF 78 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS--SCEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC--cccchh
Confidence 367999999999999999998889999999999999999999999999999999999999999999887764 366666
Q ss_pred ccCCCCcccChhHHHHHHHHHHh-------------------------------------------------------hh
Q 004228 102 LHLPGKRFYDFSEIRREIQAQTD-------------------------------------------------------KE 126 (767)
Q Consensus 102 ~~~pg~~~~d~~~i~~~i~~~t~-------------------------------------------------------~~ 126 (767)
++.+|..|++++.+...++..+. .+
T Consensus 79 ~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 158 (299)
T 2aka_B 79 LHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQF 158 (299)
T ss_dssp TTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHH
T ss_pred hhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHH
Confidence 66666666666655554443321 11
Q ss_pred hc-CCc----cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhhh
Q 004228 127 AG-GNK----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 201 (767)
Q Consensus 127 ~g-~n~----V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di~ 201 (767)
+. .+. |++++.++.+++.+.+++.+++.|.++|+|+||+|+++.+.+..+++.++...+++||+.|.+.|+.+-.
T Consensus 159 ~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 159 VTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp HTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTT
T ss_pred HcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcc
Confidence 11 111 6788999999998899999999999999999999999877767788888778888899999999998755
Q ss_pred cccCHHHHHHHHHHhhccCCCCCCcccccChhHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 004228 202 FNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSAL 262 (767)
Q Consensus 202 ~~~s~~ea~~~E~~FF~~~~~~~~l~~~~Gi~~L~~~Ls~iL~~hI~~~LP~l~~~I~~~L 262 (767)
.-..+.++...|..||..++.|.....++|+..|.+.|.+.|..|++++||.++.+|+.+|
T Consensus 239 gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~~ 299 (299)
T 2aka_B 239 GKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299 (299)
T ss_dssp SCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 5456788888899999888899999999999999999999999999999999999998763
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.22 E-value=9e-11 Score=139.13 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCc-------c
Q 004228 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTD-------E 96 (767)
Q Consensus 24 ~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~-------~ 96 (767)
.+...+++|++.+..+- -.-+.|+|||.+|+|||||||+|+|.+++|++.+.||++|+++........ .
T Consensus 50 ~l~~~l~~L~~~~~~l~----~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~ 125 (695)
T 2j69_A 50 SLERDIEDITIASKNLQ----QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGK 125 (695)
T ss_dssp CCHHHHHHHHHHHHHHH----HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSC
T ss_pred HHHHHHHHHHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCC
Confidence 34445555655444431 145789999999999999999999999999999999999988865322110 0
Q ss_pred c--------ccccc--------------------------cC------CCCcccChhHHHHH--HHHHHhhhhc-CCc--
Q 004228 97 E--------YGEFL--------------------------HL------PGKRFYDFSEIRRE--IQAQTDKEAG-GNK-- 131 (767)
Q Consensus 97 ~--------~~~f~--------------------------~~------pg~~~~d~~~i~~~--i~~~t~~~~g-~n~-- 131 (767)
. +.... .. .+..+.|.+++... ....+..++. .+-
T Consensus 126 ~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL 205 (695)
T 2j69_A 126 SPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAIL 205 (695)
T ss_dssp CCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEE
T ss_pred cccccChhhhhhhhcCCHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEE
Confidence 0 00000 00 01122233333221 1112222221 222
Q ss_pred -cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 132 -VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 132 -V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
|++++..+..++..-+.+.+...|.++|.|+||+|+.+..
T Consensus 206 ~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 206 FVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp EEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred EEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 7778777766664444456777789999999999998654
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.35 E-value=7.1e-07 Score=89.23 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccC--CCccCcceeehhcccCCcccccccccCCCCcccChh-HHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS-EIRREIQA 121 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~--g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~-~i~~~i~~ 121 (767)
-..|.|+|||..++|||||+++|+|..++...+ ..+|+.+....+... ...-..+++.||....+.. +.+..+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPA--AEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCT--TSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCC--CCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 467899999999999999999999997433332 245665543333211 1122346788885443221 22333333
Q ss_pred HHhhhhc--CC--c---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 122 QTDKEAG--GN--K---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 122 ~t~~~~g--~n--~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
....+.. .. . |+++...+.. ....+.+.+...+...|.|+||+|+.+
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 3333321 11 1 5566554432 234555556557889999999999985
No 10
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.29 E-value=6.2e-06 Score=79.86 Aligned_cols=118 Identities=22% Similarity=0.170 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHH-HHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEI-RREIQAQ 122 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i-~~~i~~~ 122 (767)
-..|+|+|||+.++|||||+++|+|..+-.... ..+|+.+..... ..-..+.+.||......+.. .......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV------NSKYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE------TTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE------CCcEEEEECCCCccccCChhhHHHHHHH
Confidence 467899999999999999999999997433332 234554332211 11133678888544332211 2222222
Q ss_pred Hhhhh-cCCc------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 123 TDKEA-GGNK------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 123 t~~~~-g~n~------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
...+. +... |+++......++ ..+.+.+...+...|.|+||.|+.+
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSD-LMMVEWMKSLNIPFTIVLTKMDKVK 147 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHH-HHHHHHHHHcCCCEEEEEEChhcCC
Confidence 22221 1111 455544333322 3444555555889999999999975
No 11
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.27 E-value=4.7e-06 Score=89.07 Aligned_cols=120 Identities=21% Similarity=0.200 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccC-hhHHHHHHHHHHh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD-FSEIRREIQAQTD 124 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d-~~~i~~~i~~~t~ 124 (767)
..-|++||..|||||||+++|+|.++..... -.+||..+...+.... ..--.|++.||..-.. ...+.+.+.....
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~--~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN--EAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--TEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC--CCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 3479999999999999999999998754433 3567765543332210 1223577889863211 1233333333333
Q ss_pred hhh-cCCc---cccCCCcccccHHHHH-HHHhCcCCCceEEEeeccCCCC
Q 004228 125 KEA-GGNK---VTPANSDLANSDALQI-AGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 125 ~~~-g~n~---V~~a~~D~ans~aL~l-a~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.++ +.+. |+++.......+ ..+ ...+...+...|.|+||+|+.+
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~-~~~~~~~l~~~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRD-EEIYQNFIKPLNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHH-HHHHHHHTGGGCCCEEEEEECGGGSS
T ss_pred HHhhcCCEEEEEEeCCCCCCchh-HHHHHHHHHhcCCCEEEEEECccCCC
Confidence 322 2222 556655443333 333 5555556789999999999984
No 12
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.21 E-value=1.9e-06 Score=87.95 Aligned_cols=122 Identities=19% Similarity=0.143 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCC--CccCcceeehhcccCCcccccccccCCCCcccCh--hHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDF--SEIRREIQ 120 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g--~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~--~~i~~~i~ 120 (767)
-..+.|+|||..++|||||+++|+|..+...+.. .+|+.+....+... ..-..+++.||...... .++.+++.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK---ETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET---TEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC---CceEEEEECCCccCCCCCHHHHHHHHH
Confidence 3567999999999999999999999987554433 57776543332211 11235678888543322 23344444
Q ss_pred HHHhhhh-cCCc---cccCCCccccc--HHHHHHHH-hC-cCCCceEEEeeccCCCCC
Q 004228 121 AQTDKEA-GGNK---VTPANSDLANS--DALQIAGI-AD-PDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 121 ~~t~~~~-g~n~---V~~a~~D~ans--~aL~la~~-vD-P~G~RTIGVlTK~Dl~d~ 170 (767)
....... +.+. |++++ ++... ..+..+.+ +. ..+..+|.|+||+|+++.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 4333222 2222 55654 33322 23333322 11 123579999999999864
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.18 E-value=3.3e-06 Score=82.22 Aligned_cols=119 Identities=24% Similarity=0.276 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCC--CccCcceeehhcccCCcccccccccCCCCcccChh-HHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS-EIRREIQA 121 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g--~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~-~i~~~i~~ 121 (767)
-..+.|+|||..++|||||+++|+|..|.+.... .+|+......+. .-..+.+.||....+.+ .....+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~------~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN------DELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET------TTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC------CcEEEEECCCCCccccCHHHHHHHHH
Confidence 3678999999999999999999999986554332 345544322221 11346688884433222 11222322
Q ss_pred HHhhhh-cCC---c---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 122 QTDKEA-GGN---K---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 122 ~t~~~~-g~n---~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
....+. +.. . |++++......+ ..+.+.+...+...|.|+||+|+.+.
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCCh
Confidence 222222 221 1 555554433322 44555555578899999999999864
No 14
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.13 E-value=7.8e-06 Score=87.23 Aligned_cols=121 Identities=21% Similarity=0.186 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~ 124 (767)
.-..|++||..|+|||||+|+|+|.++.+... ..+||..+...+.. ...--.|++.||..-. ...+.+.+.....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~---~~~~l~l~DTpG~~~~-~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE---GRRQIVFVDTPGLHKP-MDALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE---TTEEEEEEECCCCCCC-CSHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe---CCcEEEEecCccccch-hhHHHHHHHHHHH
Confidence 34579999999999999999999998754443 24677654432211 1122347788985321 1233333434433
Q ss_pred hhhc-CCc---cccCCCcccccHHHHHHHHhCcC--CCceEEEeeccCCCCCc
Q 004228 125 KEAG-GNK---VTPANSDLANSDALQIAGIADPD--GYRTIGIITKLDIMDRG 171 (767)
Q Consensus 125 ~~~g-~n~---V~~a~~D~ans~aL~la~~vDP~--G~RTIGVlTK~Dl~d~g 171 (767)
.+.. .+. |+++...+...+ ..+.+.+... +...|.|+||+|+.+..
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAAKYP 133 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred HHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhcCCCCEEEEEECcccCCch
Confidence 3332 222 666655443332 2333333333 78899999999998643
No 15
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.10 E-value=8.4e-06 Score=78.74 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~ 107 (767)
+++|+|||+.++|||||+++|+|..|.+....++|+.+..+.+. -..+.+.||.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~-------~~~l~Dt~G~ 54 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK-------NHKIIDMPGF 54 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET-------TEEEEECCCB
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC-------CEEEEECCCc
Confidence 47899999999999999999999986433344667665444332 1345677874
No 16
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.03 E-value=6.2e-06 Score=85.87 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCc-ccChh---HHHHHHHH
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDFS---EIRREIQA 121 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~d~~---~i~~~i~~ 121 (767)
+|.|+|||..|+|||||+++|+|..+ .++ ..++|+....-.+... ..-..+.++||.. +.... ...+.+..
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~ 76 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLG---EHLIEITDLPGVYSLVANAEGISQDEQIAA 76 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEET---TEEEEEEECCCCSSCC------CHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEEC---CeEEEEEeCCCcccccccccCCCHHHHHHH
Confidence 48999999999999999999999975 443 3456654433332211 1223567889853 22110 11111211
Q ss_pred HHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 122 QTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 122 ~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
..-.....+. |+++.. . ...+.+..++-..|.+.|.|+||.|+.+
T Consensus 77 ~~~~~~~~d~vi~VvDas~-~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 77 QSVIDLEYDCIINVIDACH-L--ERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp HHHHHSCCSEEEEEEEGGG-H--HHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred HHHhhCCCCEEEEEeeCCC-c--hhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 1100011121 444433 1 2335667777778999999999999975
No 17
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.03 E-value=9.6e-06 Score=84.59 Aligned_cols=120 Identities=14% Similarity=0.112 Sum_probs=68.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccC-h-hHHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD-F-SEIRREIQA 121 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d-~-~~i~~~i~~ 121 (767)
..-+.|+|||..++|||||+++|+|..+.+.+. ..+|+.+....+... ..--.+++.||....+ . ....+.+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~l~iiDTpG~~~~~~~~~~~~~~i-- 111 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA---GFTLNIIDTPGLIEGGYINDMALNII-- 111 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET---TEEEEEEECCCSEETTEECHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC---CeEEEEEECCCCCCCccchHHHHHHH--
Confidence 345799999999999999999999998755543 356776655443221 1123567888853221 1 1222222
Q ss_pred HHhhhh---cCCc---cccCCC-ccccc--HHHHHHHHhCcCC--CceEEEeeccCCCCCc
Q 004228 122 QTDKEA---GGNK---VTPANS-DLANS--DALQIAGIADPDG--YRTIGIITKLDIMDRG 171 (767)
Q Consensus 122 ~t~~~~---g~n~---V~~a~~-D~ans--~aL~la~~vDP~G--~RTIGVlTK~Dl~d~g 171 (767)
.++. +.+. |++.+. .+... ..++.+++....+ .++|.|+||+|+.++.
T Consensus 112 --~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 112 --KSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp --HHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred --HHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2222 1121 433322 23322 2334343331112 5899999999998643
No 18
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.99 E-value=2.3e-05 Score=74.76 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHH
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t 123 (767)
.-..+.|+|||+.++|||||+++|++..|.+....++|.......+... ...-.+.+.||..- +..+.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~Dt~G~~~--~~~~~------- 72 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN---DKKITFLDTPGHEA--FTTMR------- 72 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET---TEEEEESCCCSSSS--SSCSC-------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC---CceEEEEECCCCHH--HHHHH-------
Confidence 3467899999999999999999999998754443444433221111111 11123567777421 11110
Q ss_pred hhhh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 124 DKEA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 124 ~~~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
..+. +.+. |++++.. .....++.++.+...+...|.|+||.|+.+.
T Consensus 73 ~~~~~~~d~~i~v~d~~~~-~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 73 ARGAQVTDIVILVVAADDG-VMPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp CSSCCCCCEEEEEEETTCC-CCHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHhhCCEEEEEEECCCC-CcHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 1111 1111 4443332 2355667777777678899999999999864
No 19
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.98 E-value=5.7e-06 Score=92.70 Aligned_cols=118 Identities=17% Similarity=0.156 Sum_probs=59.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
+|.|++||+.|+|||||++.|+|..+-.++ .-++||....-.+.-. ... ..+.+.||....+-+.+...+...+..
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~--~~~-~~l~DT~G~~~~~~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--GKT-FKLVDTCGVFDNPQDIISQKMKEVTLN 77 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET--TEE-EEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEEC--CeE-EEEEECCCccccccchHHHHHHHHHHH
Confidence 589999999999999999999998742233 2357776543322211 111 245688885432111121222222222
Q ss_pred hh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 126 EA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
+. +.+. |+++...+...+ ..+++.+...+...|.|+||+|+.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d-~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKED-ESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHHTCCEEEEEESCCSH
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEeCCCCc
Confidence 22 2222 556655443332 233343333578899999999975
No 20
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.96 E-value=9.9e-06 Score=90.65 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
.|.|++||+.|+|||||++.|+|..+-.+.. -++||......+... ...-.+.+.||....+.+ +..++...+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~---~~~~~l~DT~G~~~~~~~-~~~~~~~~~~~ 78 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL---NYDFNLIDTGGIDIGDEP-FLAQIRQQAEI 78 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC---SSCCEEEC---------C-HHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC---CceEEEEECCCCCCcchh-HHHHHHHHHHH
Confidence 5899999999999999999999987633332 357776544333211 111234577775432211 22333333322
Q ss_pred hh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 126 EA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+. +.+. |+++...+...+ ..+++.+...+...|.|+||+|+.+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d-~~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAAD-EEVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHH-HHHHHHHTTCCSCEEEEEECCCC---
T ss_pred HHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCccc
Confidence 22 2222 555555444333 45666677788999999999999754
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.95 E-value=6.6e-06 Score=77.13 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=58.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
+|+|+|+|+.++||||++++|+|..+.... ...+|+.+....+... ...-.+.+.||..... .+...+......
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~ 75 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD---RGRFLLVDTGGLWSGD--KWEKKIQEKVDR 75 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET---TEEEEEEECGGGCSSS--SCCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC---CceEEEEECCCCCCcc--chHHHHHHHHHH
Confidence 589999999999999999999998753222 2344544332222211 1122356777643211 011112222222
Q ss_pred hh-cCCc---cccCCCccccc--HHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 126 EA-GGNK---VTPANSDLANS--DALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~ans--~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+. ..+. |+++...+... ...++.+. .+...|.|+||+|+.+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR---KGKPVILVATKVDDPKH 123 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH---HTCCEEEEEECCCSGGG
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHh---cCCCEEEEEECcccccc
Confidence 22 2222 44554433322 22333443 46789999999999864
No 22
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.95 E-value=7.1e-06 Score=92.36 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHH
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~ 122 (767)
...+|.|++||+.|+|||||+++|+|..+-.+.. -++||.......... .....+++.||....+ +.+.+++...
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~---~~~~~liDT~G~~~~~-~~~~~~~~~~ 95 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL---NYDFNLIDTGGIDIGD-EPFLAQIRQQ 95 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC---SSCCEEECCCC-------CCHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC---CceEEEEECCCCCCcc-hHHHHHHHHH
Confidence 4578999999999999999999999987643332 356776554433221 1123456788854211 1122233333
Q ss_pred Hhhhh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 123 TDKEA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 123 t~~~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+..+. +.+. |+++...+...+ ..+++.+...+...|.|+||+|+.+.
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTTCCSCEEEEEECC-----
T ss_pred HHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHHcCCCEEEEEECccchhh
Confidence 32222 2222 556655443333 46777777789999999999998753
No 23
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.95 E-value=1.3e-05 Score=80.83 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhH---H-HHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE---I-RREIQA 121 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~---i-~~~i~~ 121 (767)
..++|+|||+.++|||||+++|+|..|.+.....+|+....-.+... ..-..+.+.||..-....+ + ...+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK---LNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET---TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC---CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 46799999999999999999999998743333445554332111100 1123456788863211111 1 111111
Q ss_pred HHhhhhcCCc---cccCCCcc--cccHHHHHHHHhCcC--CCceEEEeeccCCCC
Q 004228 122 QTDKEAGGNK---VTPANSDL--ANSDALQIAGIADPD--GYRTIGIITKLDIMD 169 (767)
Q Consensus 122 ~t~~~~g~n~---V~~a~~D~--ans~aL~la~~vDP~--G~RTIGVlTK~Dl~d 169 (767)
.+.+.+. |++++... .....+.+...+... +...|.|+||+|+.+
T Consensus 105 ---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 105 ---LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp ---HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred ---hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 1111121 44443321 112234555555443 788999999999975
No 24
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.6e-05 Score=77.30 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=39.1
Q ss_pred CCCCCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 19 VPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 19 ~~~~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
..+...+-.+.+.|.+++........-..+.|+|||..+|||||++++|+|..|.
T Consensus 20 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~ 74 (193)
T 2ged_A 20 SINKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVR 74 (193)
T ss_dssp BTTTTBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3456677777787777766655444567789999999999999999999999763
No 25
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.93 E-value=3.2e-05 Score=86.95 Aligned_cols=140 Identities=21% Similarity=0.295 Sum_probs=77.6
Q ss_pred CCchHHHHHHHHHHHHHhCCC-CCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCccccc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYG 99 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~-~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~ 99 (767)
+..+-.+++.+.+.+...... ..-..+.|+|||+.++|||||+++|+|......+. .++||.+....+.... .--
T Consensus 169 g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~---~~~ 245 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ---QEF 245 (456)
T ss_dssp CTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT---EEE
T ss_pred ccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC---ceE
Confidence 345556666665433222111 22356899999999999999999999986544433 3567665433332211 112
Q ss_pred ccccCCCCcc--------cChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 100 EFLHLPGKRF--------YDFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 100 ~f~~~pg~~~--------~d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
.+.+.||..- ..+..++. + ..+-..+. |+++...+..++ ..++..+...|...|.|+||+|+.
T Consensus 246 ~l~DT~G~~~~~~~~~~~e~~~~~~~-~----~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 246 VIVDTAGMRKKGKVYETTEKYSVLRA-L----KAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp EETTGGGTTTBTTBCCCCSHHHHHHH-H----HHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGS
T ss_pred EEEECCCCCcCcccchHHHHHHHHHH-H----HHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEEChhcC
Confidence 4567776311 11111111 1 01111222 566666665554 456666666789999999999998
Q ss_pred CC
Q 004228 169 DR 170 (767)
Q Consensus 169 d~ 170 (767)
+.
T Consensus 320 ~~ 321 (456)
T 4dcu_A 320 DK 321 (456)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 26
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.90 E-value=2.6e-05 Score=85.51 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
.+|.|++||..||||||||++|+|..+...+.-.+|+.|+.-.+.-. ... ..+.+.+|........+.+.+....+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~--g~~-v~l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN--NRK-IMLVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEET--TEE-EEEEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC--CEE-EEEEeCCCchhcCCHHHHHHHHHHHHH
Confidence 57889999999999999999999998633334467877754333221 111 235566774321111122222222222
Q ss_pred hhcCCc---cccCCCcc---cc--cHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 126 EAGGNK---VTPANSDL---AN--SDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~---an--s~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
+...+- |+++.... .. ....++.+++...+...|.|+||+|+.+.+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 222222 44433221 11 112456677766778999999999998655
No 27
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.90 E-value=1.5e-05 Score=91.95 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCc--cccCCCccCcceeehhcccC----C-------------cc----------
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL--PRGNDICTRRPLVLQLLQTK----T-------------DE---------- 96 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~fl--Pr~~g~~TR~Pl~l~l~~~~----~-------------~~---------- 96 (767)
..|.|+|||..|+|||||||+|+|.++. +.+...+|.+.+.+...... . ..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 5699999999999999999999999864 45555555443332211100 0 00
Q ss_pred ----------cccccccCCCCccc---------ChhHHHHHHHHHHhhhhcCCc---cccCCC-cccccHHHHHHHHhCc
Q 004228 97 ----------EYGEFLHLPGKRFY---------DFSEIRREIQAQTDKEAGGNK---VTPANS-DLANSDALQIAGIADP 153 (767)
Q Consensus 97 ----------~~~~f~~~pg~~~~---------d~~~i~~~i~~~t~~~~g~n~---V~~a~~-D~ans~aL~la~~vDP 153 (767)
.--.|++.||.... +|..+....- ...+. |++++. ++.. ....+++.+..
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l------~~aD~il~VvDa~~~~~~~-~~~~~l~~l~~ 216 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA------ERVDLIILLFDAHKLEISD-EFSEAIGALRG 216 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHH------HHCSEEEEEEETTSCCCCH-HHHHHHHHTTT
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH------HhCCEEEEEEeCCcCCCCH-HHHHHHHHHHh
Confidence 01235677774321 1222211111 11121 566654 3432 33566777777
Q ss_pred CCCceEEEeeccCCCCC
Q 004228 154 DGYRTIGIITKLDIMDR 170 (767)
Q Consensus 154 ~G~RTIGVlTK~Dl~d~ 170 (767)
.+.+.|.|+||+|+++.
T Consensus 217 ~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVET 233 (550)
T ss_dssp CGGGEEEEEECGGGSCH
T ss_pred cCCCEEEEEECCCccCH
Confidence 78899999999999864
No 28
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.89 E-value=3.1e-05 Score=87.80 Aligned_cols=117 Identities=13% Similarity=0.160 Sum_probs=51.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHH-HHHHhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREI-QAQTDK 125 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i-~~~t~~ 125 (767)
..|+|||..|+||||||++|+|.++..+. ..++||...+-.+... ..--.+++.||.. ++....+.+ ...+..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~---g~~l~liDT~G~~--~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD---KTMFRLTDTAGLR--EAGEEIEHEGIRRSRM 308 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEET---TEEEEEEC----------------------C
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC---CeEEEEEECCCCC--cchhHHHHHHHHHHHh
Confidence 35999999999999999999998653333 2456776654333221 1113455667642 222211111 011111
Q ss_pred hh-cCCc---cccCCCccccc---HHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 126 EA-GGNK---VTPANSDLANS---DALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~ans---~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
+. ..+- |++++...... ....+.+.+. +...|.|+||+|+.+..
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANA 359 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTT
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCcc
Confidence 11 1121 55555433221 4456666665 78999999999998644
No 29
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.89 E-value=4e-05 Score=73.06 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
....|+|||..++|||||+++|++..|.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~ 36 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQ 36 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcc
Confidence 356899999999999999999999876433
No 30
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.88 E-value=1.1e-05 Score=85.93 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t 123 (767)
+.-+.|++||..++|||||+|+|+|..+.+.+. ..+||....-.+.. ...--.|++.||.....+..+.+.+....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~---~~~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE---GAYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE---TTEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE---CCeeEEEEECcCCCccchhhHHHHHHHHH
Confidence 344579999999999999999999998644433 24677554321111 11223467888853111112222111111
Q ss_pred hhhhcCCc----cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 124 DKEAGGNK----VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 124 ~~~~g~n~----V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
...+..-. |+++.. +...+ ..+++.+...+...|.|+||+|+..
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~-~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDD-EMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHH-HHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHH-HHHHHHHHhcCCCEEEEEECcccCc
Confidence 11111101 556654 55444 3555666556889999999999986
No 31
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.86 E-value=3.9e-05 Score=85.86 Aligned_cols=143 Identities=20% Similarity=0.321 Sum_probs=73.0
Q ss_pred CCchHHHHHHHHHHHHHhCCC--C---CCCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQ--S---TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTD 95 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~--~---~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~ 95 (767)
+..+-.+++.|.+.+...+.. . .-..++|++||+.||||||||++|+|..+..++. .++||.|..-.+... .
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~--g 227 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID--G 227 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET--T
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC--C
Confidence 445666667666655433311 1 2356799999999999999999999997643332 357777754433221 1
Q ss_pred ccccccccCCCCcccChhHHH-HHHH-----HHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccC
Q 004228 96 EEYGEFLHLPGKRFYDFSEIR-REIQ-----AQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 166 (767)
Q Consensus 96 ~~~~~f~~~pg~~~~d~~~i~-~~i~-----~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~D 166 (767)
..+ .+.+.||..- +..+. +.++ .....+...+. |+++...+..++ ..++..+...|...|.|+||+|
T Consensus 228 ~~~-~l~Dt~G~~~--~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~~~~~~ilv~NK~D 303 (439)
T 1mky_A 228 RKY-VFVDTAGLRR--KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERRGRASVVVFNKWD 303 (439)
T ss_dssp EEE-EESSCSCC-------------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGG
T ss_pred EEE-EEEECCCCcc--ccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECcc
Confidence 111 3445666311 00000 0000 00001111121 334444343333 4555555567899999999999
Q ss_pred CCCC
Q 004228 167 IMDR 170 (767)
Q Consensus 167 l~d~ 170 (767)
+.+.
T Consensus 304 l~~~ 307 (439)
T 1mky_A 304 LVVH 307 (439)
T ss_dssp GSTT
T ss_pred CCCc
Confidence 9853
No 32
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.86 E-value=2.4e-05 Score=87.49 Aligned_cols=140 Identities=21% Similarity=0.310 Sum_probs=75.1
Q ss_pred CCchHHHHHHHHHHHHHhCCC-CCCCCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCccccc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYG 99 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~-~~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~ 99 (767)
+..+-.+++.|.+.+...... ..-..+.|+|||+.++|||||+++|+|..+...+. .++||......+.... .. .
T Consensus 149 g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~-~ 225 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QE-F 225 (436)
T ss_dssp TBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EE-E
T ss_pred CCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eE-E
Confidence 455666666665543221100 12256799999999999999999999998753432 3567765443332221 11 2
Q ss_pred ccccCCCCcc--------cChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 100 EFLHLPGKRF--------YDFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 100 ~f~~~pg~~~--------~d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
.+.+.||..- ..|..++. + ..+...+. |+++...+..++ ++++..+...|...|.|+||+|++
T Consensus 226 ~l~DT~G~~~~~~~~~~~e~~~~~~~-~----~~~~~ad~~llv~D~~~~~s~~~-~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 226 VIVDTAGMRKKGKVYETTEKYSVLRA-L----KAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp EETTHHHHTCBTTBCCCCSHHHHHHH-H----HHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGS
T ss_pred EEEECCCcCcCccccchHHHHHHHHH-H----HHHHhCCEEEEEEcCCcCCcHHH-HHHHHHHHHcCCcEEEEEECccCC
Confidence 3445554210 01111111 1 11112222 556666555555 456666666799999999999998
Q ss_pred CC
Q 004228 169 DR 170 (767)
Q Consensus 169 d~ 170 (767)
+.
T Consensus 300 ~~ 301 (436)
T 2hjg_A 300 DK 301 (436)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 33
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.81 E-value=3.8e-05 Score=75.12 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~ 126 (767)
..+|+|||+.++|||||+++|++..|.+....+.+.......+. .....---.+.+.||.. .+..+....-
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~--~~~~~~~~~~------ 96 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE-LRGKKIRLQIWDTAGQE--RFNSITSAYY------ 96 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEE-ETTEEEEEEEEEECCSG--GGHHHHHHHH------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEE-ECCeEEEEEEEeCCCcH--HHHHHHHHHh------
Confidence 35899999999999999999999887433332222111111110 00001112455777742 2333222111
Q ss_pred hcCCc---cccCCCccccc---HHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 127 AGGNK---VTPANSDLANS---DALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 127 ~g~n~---V~~a~~D~ans---~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+.+. |++++....-. .-+..++...+.+...|.|+||.|+.+
T Consensus 97 ~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 97 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 11121 33333211111 123556677777899999999999864
No 34
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.79 E-value=3e-05 Score=80.47 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~ 124 (767)
.-..|+|||..++|||||+++|+|..+...+. ..+|+.+....+... ..--.+++.||.. ++............
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~l~liDTpG~~--~~~~~~~~~~~~i~ 109 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG---GFTINIIDTPGLV--EAGYVNHQALELIK 109 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET---TEEEEEEECCCSE--ETTEECHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC---CeeEEEEECCCCC--CcccchHHHHHHHH
Confidence 45789999999999999999999998644333 344555543333221 1123467888853 22211111111122
Q ss_pred hhhc---CCc---cccCCC-ccccc--HHHHHHHHhCcCC--CceEEEeeccCCCCC
Q 004228 125 KEAG---GNK---VTPANS-DLANS--DALQIAGIADPDG--YRTIGIITKLDIMDR 170 (767)
Q Consensus 125 ~~~g---~n~---V~~a~~-D~ans--~aL~la~~vDP~G--~RTIGVlTK~Dl~d~ 170 (767)
+++. .+. |.+.+. .+.+. ..++.+++.-..+ ..+|.|+||+|+.+.
T Consensus 110 ~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 110 GFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2221 111 332222 23322 3455555542222 378999999999753
No 35
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.77 E-value=6e-05 Score=78.75 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=64.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCC--------CccCcceeehhcccCCcccccccccCCCCcc-----cChhH
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND--------ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF-----YDFSE 114 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g--------~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~-----~d~~~ 114 (767)
..|+|||..++|||||+|+|+|.+..+.... +++.......+... ...---.+++.||... ..+..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-GVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC-CeEEEEEEEECCCccccccchhhHHH
Confidence 3799999999999999999999886665431 11111111111100 0000234568888532 12344
Q ss_pred HHHHHHHHHhhhhc----C-------Cc-------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 115 IRREIQAQTDKEAG----G-------NK-------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 115 i~~~i~~~t~~~~g----~-------n~-------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+...|....+.++. - +. |.++...+...+ ..+.+.+.. +...|.|+||+|++..
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH-HHHHHHHTT-TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH-HHHHHHHhc-cCCEEEEEeccCCCCH
Confidence 55444433222221 0 11 334444444333 567777776 8999999999999853
No 36
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.76 E-value=5.4e-05 Score=85.54 Aligned_cols=116 Identities=23% Similarity=0.239 Sum_probs=58.0
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHH-HHHHhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREI-QAQTDK 125 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i-~~~t~~ 125 (767)
..|++||..|+||||||++|+|..+..... .++||..++-.+... . .--.+++.||.. ++....+.+ ...+..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g-~~v~liDT~G~~--~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG--G-IPVQVLDTAGIR--ETSDQVEKIGVERSRQ 299 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET--T-EEEEECC----------------------C
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC--C-EEEEEEECCccc--cchhHHHHHHHHHHhh
Confidence 369999999999999999999986543332 456665433222111 1 112355666632 221111111 011111
Q ss_pred hh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 126 EA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
+. ..+- |+++...+...+ ..+.+.+. ....|.|+||.|+.+..
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~--~~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK--HRPLILVMNKIDLVEKQ 346 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT--TSCEEEEEECTTSSCGG
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc--CCcEEEEEECCCCCcch
Confidence 11 1121 555555443332 45555554 26899999999998643
No 37
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.76 E-value=5e-05 Score=86.24 Aligned_cols=113 Identities=22% Similarity=0.271 Sum_probs=65.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCc-cc-Ch-h--HHHHHHHH
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FY-DF-S--EIRREIQA 121 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~-d~-~--~i~~~i~~ 121 (767)
..|++||..|+||||||++|+|.++..+. ...+||.+.+-.+... . .-..+.+.||.. .+ +. + .++....
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~--g-~~~~l~DTaG~~~~~~~~ve~~gi~~~~~- 319 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--G-ILFRIVDTAGVRSETNDLVERLGIERTLQ- 319 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--T-EEEEEEESSCCCSSCCTTCCCCCHHHHHH-
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC--C-eEEEEEECCCccccchhhHHHHHHHHHHH-
Confidence 68999999999999999999998753333 3467887765444322 1 123466888854 21 11 0 1221111
Q ss_pred HHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 122 QTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 122 ~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
.+...+- |+++...... +..++...+ .+...|.|+||+|+.+.
T Consensus 320 ---~~~~aD~vl~VvD~s~~~s~-~~~~il~~l--~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 320 ---EIEKADIVLFVLDASSPLDE-EDRKILERI--KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp ---HHHHCSEEEEEEETTSCCCH-HHHHHHHHH--TTSSEEEEEEECSSCCC
T ss_pred ---HhhcccEEEEEecCCCCCCH-HHHHHHHHh--cCCCEEEEEECcccccc
Confidence 1111222 4554433221 223444555 37789999999999753
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.76 E-value=3.9e-05 Score=73.32 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=57.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~ 126 (767)
...|+|||+.++|||||+++|++..|.+......+-................-.+.+.||.. .+..+ ...+
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~ 80 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE--RFRSV-------THAY 80 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------CC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH--HHHHH-------HHHH
Confidence 45899999999999999999999887443221111111111000111001112345677732 11111 1111
Q ss_pred h-cCCc---cccCCCccc--c-cHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 127 A-GGNK---VTPANSDLA--N-SDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 127 ~-g~n~---V~~a~~D~a--n-s~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
. +.+. |++++.... + ...+..+....+.+...|.|+||.|+.+
T Consensus 81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 81 YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp GGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 1 1221 333332111 1 1224455565567889999999999975
No 39
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.73 E-value=0.0001 Score=70.18 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
..++|+|||+.++|||||+++|+|..+.+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~ 36 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSG 36 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 56799999999999999999999997643
No 40
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.73 E-value=6.9e-05 Score=77.22 Aligned_cols=121 Identities=17% Similarity=0.078 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCC--CccCcceeehhcccCCcccccccccCCCCccc--ChhHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY--DFSEIRREIQ 120 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g--~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~--d~~~i~~~i~ 120 (767)
-....|+|||..+||||||+++|+|....+.+.. .+|+.......... ..--.+++.||.... ....+.+++.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG---NREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET---TEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC---CCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3567999999999999999999999874454432 26665432222111 112346788885322 1123333333
Q ss_pred HHHhhhh-cCCc---cccCCCccccc--HHHHHHHHhCcC--CCceEEEee-ccCCCC
Q 004228 121 AQTDKEA-GGNK---VTPANSDLANS--DALQIAGIADPD--GYRTIGIIT-KLDIMD 169 (767)
Q Consensus 121 ~~t~~~~-g~n~---V~~a~~D~ans--~aL~la~~vDP~--G~RTIGVlT-K~Dl~d 169 (767)
.....+. +.+. |+++.. +..+ ..++.++++-.. +..+|.|+| |.|+.+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 3332222 2232 556653 4333 234445444221 467899999 999984
No 41
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.73 E-value=2.1e-05 Score=82.45 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=65.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCc-ccChh---HHHHHHHH
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDFS---EIRREIQA 121 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~d~~---~i~~~i~~ 121 (767)
-+.|+|+|..|+|||||+++|+|..+ .++. .++|+.+..-.+... ..-..+++.||.. +.... .+.+.+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTT---DHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECS---SCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeC---CCceEEEECcCCCccccccccCCHHHHHHH
Confidence 36899999999999999999999975 4443 456665544443322 1123467888842 22111 12222221
Q ss_pred HHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 122 QTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 122 ~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.....-..+. |+++.. + ...+.+..++...+...|.|+||+|+.+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~-~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASN-L--ERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGG-H--HHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred HHHhhcCCCEEEEEecCCC-h--HHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 1110011121 444433 1 1223344444445899999999999874
No 42
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.71 E-value=9.4e-05 Score=72.32 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=5.3
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC--CC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR--DF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~--~f 72 (767)
.+|+|||+.++|||||+++|++. .|
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~ 47 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKF 47 (208)
T ss_dssp EEEEEC---------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc
Confidence 48999999999999999999998 65
No 43
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.70 E-value=5e-05 Score=79.04 Aligned_cols=115 Identities=18% Similarity=0.095 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCc-ccChhHHHHHHHHHHh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDFSEIRREIQAQTD 124 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~d~~~i~~~i~~~t~ 124 (767)
-+.|+|||..++|||||+++|+|..+ ..+ ..++|.......+... ..--.+.+.||.. +.... ..+.+....-
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~-~~e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYK---GYTINLIDLPGTYSLGYSS-IDEKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEET---TEEEEEEECCCCSSCCSSS-HHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEEC---CeEEEEEECCCcCccCCCC-HHHHHHHHHH
Confidence 35799999999999999999999876 333 2355654443333221 1223567888842 32221 1111111110
Q ss_pred hhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 125 KEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 125 ~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
...+.+. |++++. + ...+.+..++-..|...|.|+||+|+.+
T Consensus 80 ~~~~~d~ii~V~D~t~-~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 80 LKGDADLVILVADSVN-P--EQSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHSCCSEEEEEEETTS-C--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred hhcCCCEEEEEeCCCc-h--hhHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 0011121 444433 2 1234555666666899999999999864
No 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.70 E-value=2.6e-05 Score=74.38 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
..+.|+|||+.++|||||+++|++..|.+... ..|+......+. .......-.+.+.||.. ++..+....-.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~Dt~G~~--~~~~~~~~~~~---- 79 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICS-VDGIPARLDILDTAGQE--EFGAMREQYMR---- 79 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC-TTCCEEEEEEEE-ETTEEEEEEEEECCCTT--TTSCCHHHHHH----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccC-CCcCceEEEEEE-ECCEEEEEEEEECCCch--hhHHHHHHHHh----
Confidence 45689999999999999999999987643322 233322221111 11001123456778742 22222211111
Q ss_pred hhcCCc---cccCCCcccccHH----HHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EAGGNK---VTPANSDLANSDA----LQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~ans~a----L~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.+. |+++...-.-..+ ..+.+.....+...|.|+||.|+.+
T Consensus 80 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 80 --AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp --HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred --hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1121 3322221000111 1333555677889999999999864
No 45
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.67 E-value=4.8e-05 Score=72.34 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
....|+|||+.++|||||+++|++..|......+. .................-.+.+.||.. ++..+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~~~~~------ 84 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI-GVEFGTRIIEVSGQKIKLQIWDTAGQE--RFRAVTRSY------ 84 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSC-CCCEEEEEEEETTEEEEEEEEECTTGG--GTCHHHHHH------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc-ceEEEEEEEEECCeEEEEEEEECCCCh--HhhhhHHHH------
Confidence 35789999999999999999999988643322221 111111111111111123455777732 222222111
Q ss_pred hhcCCc---cccCCCccccc---HHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EAGGNK---VTPANSDLANS---DALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~ans---~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+...+. |++++....-. ..+..++.....+...|.|+||.|+.+
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 111121 33333221111 123335555556788999999999964
No 46
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.67 E-value=0.00013 Score=70.34 Aligned_cols=118 Identities=19% Similarity=0.159 Sum_probs=62.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHH-HHHHHhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRRE-IQAQTDK 125 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~-i~~~t~~ 125 (767)
.+|+|||+.++||||||++|+|..+.... ...+|+....-.+... ... -.+.+.||..... ..++.. +......
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~-~~l~Dt~G~~~~~-~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--GMP-LHIIDTAGLREAS-DEVERIGIERAWQE 80 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--TEE-EEEEECCCCSCCS-SHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC--CeE-EEEEECCCcccch-hHHHHHHHHHHHHH
Confidence 47999999999999999999998642222 2234554332222111 111 2456777753211 112211 1111112
Q ss_pred hhcCCc---cccCCCcc--cccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EAGGNK---VTPANSDL--ANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~--ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.+.+. |+++.... .....+..+++..+.+...|.|+||+|+.+
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 222232 44443222 122334445555566788999999999864
No 47
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.67 E-value=6.8e-05 Score=77.31 Aligned_cols=119 Identities=17% Similarity=0.074 Sum_probs=64.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCC--CccCcceeehhcccCCcccccccccCCCCcccChh---HHHHHHHH
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS---EIRREIQA 121 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g--~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~---~i~~~i~~ 121 (767)
-..|++||..|||||||+++|+|..+...+.. .+|+.+........ ...-.+++.||....... ++..++..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD---KCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET---TEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC---CcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 35899999999999999999999987655432 37776644333221 122357789985322111 12222322
Q ss_pred HHh-hhhcCCc---cccCCCccccc--HHHHHHHHh-CcC--CCceEEEeeccCCCC
Q 004228 122 QTD-KEAGGNK---VTPANSDLANS--DALQIAGIA-DPD--GYRTIGIITKLDIMD 169 (767)
Q Consensus 122 ~t~-~~~g~n~---V~~a~~D~ans--~aL~la~~v-DP~--G~RTIGVlTK~Dl~d 169 (767)
... ...+.+. |+++.. +... .+++.++++ .+. +...|.|.+|.|+.+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 211 1122222 666653 4332 345555553 222 556788889999865
No 48
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.65 E-value=6.9e-05 Score=70.09 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=57.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCcc-CcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T-R~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~ 126 (767)
..|+|||+.++|||||+++|++..|.+....+.+ .....+.+. .....-.+.+.||.. ++..+....-.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~D~~G~~--~~~~~~~~~~~----- 73 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVD---SSPSVLEILDTAGTE--QFASMRDLYIK----- 73 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEET---TEEEEEEEEECCCTT--CCHHHHHHHHH-----
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEEC---CEEEEEEEEECCCch--hhHHHHHHHhc-----
Confidence 3799999999999999999998876443332211 111111110 001113456788742 33333322111
Q ss_pred hcCCc---cccCCCcccccHH----HHHHHHhCcCCCceEEEeeccCCCC
Q 004228 127 AGGNK---VTPANSDLANSDA----LQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 127 ~g~n~---V~~a~~D~ans~a----L~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.+. |+++...-.-..+ ..+.+.....+...|.|+||.|+.+
T Consensus 74 -~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 74 -NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp -HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred -cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 1121 3333221100111 1234445556899999999999864
No 49
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.65 E-value=7.7e-05 Score=71.10 Aligned_cols=114 Identities=21% Similarity=0.208 Sum_probs=56.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCc-ccChhHHHHHHHHHHhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDFSEIRREIQAQTDK 125 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~d~~~i~~~i~~~t~~ 125 (767)
+.|++||+.++|||||+++|+|..+ +.+. .++|+.+..-.+... .....+.+.||.. |.... ..+.+...--+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~---~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~~~ 78 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYN---GEKFKVVDLPGVYSLTANS-IDEIIARDYII 78 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEET---TEEEEEEECCCCSCSSSSS-HHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEEC---CcEEEEEECCCcccCCCcc-hhHHHHHHHHh
Confidence 5799999999999999999999865 3322 233443322221111 1123455777743 22111 11111111001
Q ss_pred hhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
..+.+- |+++.. .. ....+..++...+...|.|.||+|+.+
T Consensus 79 ~~~~~~~i~v~D~~~-~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 79 NEKPDLVVNIVDATA-LE--RNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HHCCSEEEEEEETTC-HH--HHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred cCCCCEEEEEecCCc-hh--HhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 012222 333322 11 122333343335788999999999853
No 50
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.63 E-value=5.3e-05 Score=72.96 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
..+|+|||+.++||||||++|++..|.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 37 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFN 37 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999988763
No 51
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.62 E-value=8.1e-05 Score=78.22 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCc-ccChhHHHHHHHHHHhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDFSEIRREIQAQTDK 125 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~d~~~i~~~i~~~t~~ 125 (767)
.+.|++||..|+|||||+++|+|..+..-.-.++|+.+....+.. ..--.+.++||.. +.... ..+.+... .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~----~~~l~l~DtpG~~~~~~~~-~~e~v~~~--~ 75 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK----NKDLEIQDLPGIYSMSPYS-PEAKVARD--Y 75 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT----CTTEEEEECCCCSCSSCSS-HHHHHHHH--H
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec----CCeEEEEECCCcCccCCCC-hHHHHHHH--H
Confidence 468999999999999999999998642222235666654444322 1123466888843 32221 11111111 1
Q ss_pred hhc--CCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EAG--GNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~g--~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.+ .+. |+++.. + ...+.+..++-..|...|.|+||+|+.+
T Consensus 76 ~~~~~~d~vi~V~D~t~-~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 76 LLSQRADSILNVVDATN-L--ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHTTCCSEEEEEEEGGG-H--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred HhcCCCCEEEEEecCCc-h--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 111 111 333322 1 1123444444446899999999999864
No 52
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.60 E-value=0.0001 Score=69.31 Aligned_cols=111 Identities=15% Similarity=0.116 Sum_probs=55.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
.+|+|||+.++|||||+++|+|..|.+....+.|+......+... ...-.-.+.+.||... +..+. ..+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~--~~~~~-------~~~~ 73 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQIWDTAGQER--FRTIT-------TAYY 73 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-SCEEEEEEECCTTGGG--TSCCC-------HHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCChh--hhhhH-------HHHh
Confidence 579999999999999999999998755444333332211111111 0011123456777321 11110 0111
Q ss_pred -cCCc---cccCCCccc--c-cHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 128 -GGNK---VTPANSDLA--N-SDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 128 -g~n~---V~~a~~D~a--n-s~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
+.+. |++++.... + ...+..++...+.+...|.|+||.|+.
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 74 RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 1111 333332111 1 122344455555688999999999984
No 53
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.59 E-value=6.2e-05 Score=74.81 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=57.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCC--ccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~--~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
-+|+|||+.++||||||++|+|..|......+ ++..+..+..... ...--.+.+.||..- +..+... .
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~--~~~~~~~------~ 81 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQG--NVIKFNVWDTAGQEK--KAVLKDV------Y 81 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTS--CEEEEEEEEECSGGG--TSCCCHH------H
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCC--cEEEEEEEecCCchh--hchHHHH------H
Confidence 48999999999999999999988764322211 1222221111110 001123456666321 1111110 0
Q ss_pred hhcCCc---cccCCCccccc---HHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 126 EAGGNK---VTPANSDLANS---DALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~ans---~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+.+.+. |++++....-. ..+..++...+.+...|.|+||+|+.+.
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 111221 33333221111 2234555555667899999999999764
No 54
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.58 E-value=7.8e-05 Score=70.97 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
...+|+|||+.++||||||++|++..|.+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~ 34 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT 34 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 34689999999999999999999887643
No 55
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.58 E-value=6.6e-05 Score=70.01 Aligned_cols=112 Identities=19% Similarity=0.262 Sum_probs=56.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
.+|+|+|+.++||||++++|++..+.+....+ +.......+... .....-.+.+.||.. ++..+....-..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~D~~G~~--~~~~~~~~~~~~----- 74 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPT-IEDSYRKQVVID-GETCLLDILDTAGQE--EYSAMRDQYMRT----- 74 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTT-CCEEEEEEEEET-TEEEEEEEEECCCCS--SCCHHHHHHHHH-----
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCc-cceEEEEEEEEC-CEEEEEEEEECCCch--hhhHHHHHhhcc-----
Confidence 37999999999999999999998764332222 221111111100 001112456788743 233333221111
Q ss_pred cCCc---cccCCCcccccHH---HHHH-HHhCcCCCceEEEeeccCCCC
Q 004228 128 GGNK---VTPANSDLANSDA---LQIA-GIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 128 g~n~---V~~a~~D~ans~a---L~la-~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+. |++++....-..+ +..+ ...+..+...+.|+||.|+.+
T Consensus 75 -~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 75 -GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp -CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 121 3333221111111 2222 233345789999999999976
No 56
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.56 E-value=7.1e-05 Score=77.98 Aligned_cols=114 Identities=23% Similarity=0.185 Sum_probs=63.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCc-ccChhHHHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDFSEIRREIQAQT 123 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~d~~~i~~~i~~~t 123 (767)
..+.|+++|..+||||||+++|+|..+ +.+. .++|.......+... ..-..+.+.||.. +.... ....+...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~-~~~~~~~~- 75 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYR---EKEFLVVDLPGIYSLTAHS-IDELIARN- 75 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEET---TEEEEEEECCCCSCCCSSC-HHHHHHHH-
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEEC---CceEEEEeCCCccccccCC-HHHHHHHH-
Confidence 467899999999999999999999976 5553 345544333222211 1124567888843 22111 11111111
Q ss_pred hhhhcCCc-----cccCCCcccccHHHHHHHHhCcCC-CceEEEeeccCCCC
Q 004228 124 DKEAGGNK-----VTPANSDLANSDALQIAGIADPDG-YRTIGIITKLDIMD 169 (767)
Q Consensus 124 ~~~~g~n~-----V~~a~~D~ans~aL~la~~vDP~G-~RTIGVlTK~Dl~d 169 (767)
.+...+. |+++..- ...+.+..++-..+ .+.|.|+||.|+.+
T Consensus 76 -~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 76 -FILDGNADVIVDIVDSTCL---MRNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp -HHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred -hhhccCCcEEEEEecCCcc---hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 1111121 3333321 12344444444456 89999999999864
No 57
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.55 E-value=8.6e-05 Score=69.50 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=57.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~ 126 (767)
..+|+|+|..++|||||+++|++..|.+... ..+.......+... ...---.+.+.||.. ++..+....-
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~-~~~~~~~l~D~~G~~--~~~~~~~~~~------ 73 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYE-PTKADSYRKKVVLD-GEEVQIDILDTAGQE--DYAAIRDNYF------ 73 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCC-TTCCEEEEEEEEET-TEEEEEEEEECCC-----CHHHHHHHH------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCC-CCcceEEEEEEEEC-CEEEEEEEEECCCcc--hhHHHHHHHh------
Confidence 3589999999999999999999987633322 22222221111111 001113456777732 2322222111
Q ss_pred hcCCc---cccCCCcccccHH----HHHHHHhCcCCCceEEEeeccCCCC
Q 004228 127 AGGNK---VTPANSDLANSDA----LQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 127 ~g~n~---V~~a~~D~ans~a----L~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
...+. |++++..-.-..+ ..+.+.....+...|.|+||.|+.+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 74 RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 11221 3333211100111 2233444556889999999999864
No 58
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.55 E-value=4.7e-05 Score=71.63 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=57.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCcc--CcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT--RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T--R~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
..|+|+|+.++|||||+++|++..|.+....+.+ .....+.+.. ...--.+.+.||.. .+..+.. .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~G~~--~~~~~~~-------~ 71 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE---HTVKFEIWDTAGQE--RFASLAP-------X 71 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT---EEEEEEEEEECCSG--GGGGGHH-------H
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC---EEEEEEEEECCCCh--hhhhhhh-------h
Confidence 4799999999999999999999876443332222 1111111110 01123455777742 1222211 1
Q ss_pred hh-cCCc---cccCCCcccccHH---HHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 126 EA-GGNK---VTPANSDLANSDA---LQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~ans~a---L~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+. +.+. |++++....-..+ +..+......+...+.|+||.|+.+.
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 72 YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred hhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 11 1221 3333322111122 22333333457889999999999754
No 59
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.54 E-value=5.2e-05 Score=71.95 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
.++|+|||+.++|||||+++|+|..+.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~ 31 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERD 31 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcc
Confidence 4689999999999999999999997643
No 60
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.54 E-value=7.9e-05 Score=70.16 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=58.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCC--ccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~--~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
.+|+|||+.++|||||+++|+|..|.+....+ +|.....+.+.. ....-.+.+.||.. ++..+.. .
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dt~G~~--~~~~~~~-------~ 74 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN---ELHKFLIWDTAGLE--RFRALAP-------M 74 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT---EEEEEEEEEECCSG--GGGGGTH-------H
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC---eEEEEEEEcCCCch--hhhcccH-------h
Confidence 58999999999999999999999864432221 222111122111 01122355677742 2221111 1
Q ss_pred hh-cCCc---cccCCCccccc---HHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EA-GGNK---VTPANSDLANS---DALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~ans---~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+. +.+. |++++....-. ..+..++.....+...+.|.||.|+.+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 75 YYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred hCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 11 1121 33433221111 123445555566778889999999975
No 61
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.54 E-value=8.4e-05 Score=72.26 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
-..+.|+|||+.++||||||++|++..|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~ 44 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSS 44 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 466799999999999999999999998744
No 62
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.54 E-value=6.4e-05 Score=74.07 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
..++|+|||+.++||||||++|++..|.+....++|+......+... .....-.+.+.||... +..+. ..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~--~~~~~-------~~ 88 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQLWDTAGQER--FRTIT-------TA 88 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEET-TEEEEEEEECCTTGGG--GTCCC-------HH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEeCCCcHH--HHHHH-------HH
Confidence 46799999999999999999999988754443344432221111111 0011234567777321 11111 11
Q ss_pred hh-cCCc---cccCCCcc--cc-cHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 126 EA-GGNK---VTPANSDL--AN-SDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~--an-s~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
+. +.+. |++++... .+ ...+..+....+.+...|.|+||+|+.
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 11 1121 33333211 11 122444555556678999999999984
No 63
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.54 E-value=0.00014 Score=69.93 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=56.2
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~~ 127 (767)
..|+|||+.++|||||+++|++..|.....++ |.......+... ....--.+.+.||... +..+....-.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~--~~~~~~~~~~------ 74 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPT-IEDSYRKQVVID-GETCLLDILDTAGQEE--YSAMRDQYMR------ 74 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCCTT-CCEEEEEEEEET-TEEEEEEEEECCCC-----CTTHHHHHH------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-chheEEEEEEEC-CcEEEEEEEECCCcHH--HHHHHHHHHh------
Confidence 37999999999999999999998764433332 222211111111 0011123567787421 2222221111
Q ss_pred cCCc---cccCCCcccccHH---H-HHHHHhCcCCCceEEEeeccCCCC
Q 004228 128 GGNK---VTPANSDLANSDA---L-QIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 128 g~n~---V~~a~~D~ans~a---L-~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.+. |++++..-.-... + .+.+.....+...|.|+||.|+.+
T Consensus 75 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 1121 3333221100111 1 223334556889999999999874
No 64
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.53 E-value=0.00015 Score=70.25 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
.-..|+|||+.++|||||+++|++..|.+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~ 48 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD 48 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc
Confidence 34589999999999999999999987643
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.53 E-value=0.00011 Score=70.39 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHh
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~ 124 (767)
....+|+|||+.++|||||+++|++..|.+.... .|.......+... ...---.+.+.||.. ++..+....-.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~-~~~~~~~l~Dt~G~~--~~~~~~~~~~~--- 88 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-TKADSYRKKVVLD-GEEVQIDILDTAGQE--DYAAIRDNYFR--- 88 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCT-TCCEEEEEEEEET-TEEEEEEEEECCCTT--CCHHHHHHHHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCC-ccceEEEEEEEEC-CEEEEEEEEECCCCc--ccHHHHHHHhc---
Confidence 4557899999999999999999999876433222 2222221111111 001113456778742 33333322111
Q ss_pred hhhcCCc---cccCCCcccccHH----HHHHHHhCcCCCceEEEeeccCCCC
Q 004228 125 KEAGGNK---VTPANSDLANSDA----LQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 125 ~~~g~n~---V~~a~~D~ans~a----L~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
..+. |++++..-.-..+ ..+.+.....+...|.|+||+|+.+
T Consensus 89 ---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 89 ---SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp ---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred ---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1121 3333211100111 2234444556889999999999864
No 66
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.53 E-value=0.00011 Score=71.90 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCc--cCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC--TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~--TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t 123 (767)
....|+|||+.++||||||++|++..|.+....+. |.....+.+. .....-.+.+.||.. ++..+ .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~l~Dt~G~~--~~~~~-------~ 74 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN---DKRIKLQIWDTAGLE--RYRTI-------T 74 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEET---TEEEEEEEEEECCSG--GGHHH-------H
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEEC---CeEEEEEEEECCCch--hhcch-------H
Confidence 35689999999999999999999998744322211 1111111110 001122455677742 22222 1
Q ss_pred hhhh-cCCc---cccCCCccccc---HHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 124 DKEA-GGNK---VTPANSDLANS---DALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 124 ~~~~-g~n~---V~~a~~D~ans---~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
..+. +.+. |++++..-.-. ..+..++...+.+...|.|+||.|+.+
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 1222 2222 33333211101 112334444556889999999999965
No 67
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.53 E-value=9.5e-05 Score=71.35 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCc-ccChhHHHHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR-FYDFSEIRREIQAQT 123 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~-~~d~~~i~~~i~~~t 123 (767)
..-+.|+|||+.+||||||+++|+|..+.+....+.|+.+....+... ...-.+.+.||.. +.... ..+.+....
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~Dt~G~~~~~~~~-~~~~~~~~~ 80 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN---GEKFKVVDLPGVYSLTANS-IDEIIARDY 80 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET---TEEEEEEECCCCSCCSSSS-HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC---CcEEEEEECCCcCcccccc-HHHHHHHHH
Confidence 345789999999999999999999986533333344544432222111 1223456778743 22111 111111110
Q ss_pred hhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 124 DKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 124 ~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
-....... |+++.. +. ....+..++...+...|.|+||+|+.+
T Consensus 81 ~~~~~~~~~i~v~d~~~-~~--~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA-LE--RNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHCCSEEEEEEEGGG-HH--HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HhccCCCEEEEEecchh-HH--HHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 00011121 232221 11 122334444446788999999999853
No 68
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.52 E-value=5.8e-05 Score=72.14 Aligned_cols=113 Identities=15% Similarity=0.112 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCcc--CcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT--RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T--R~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t 123 (767)
...+|+|||+.++||||||++|++..+.+....+.+ .....+.+.. ....-.+.+.||.. .+..+..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~Dt~G~~--~~~~~~~------ 79 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND---ATVKFEIWDTAGQE--RYHSLAP------ 79 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT---EEEEEEEEECCCSG--GGGGGTH------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC---EEEEEEEEeCCCCh--hhhhhhH------
Confidence 345899999999999999999999876443222211 1111111110 11123456777742 1221111
Q ss_pred hhhh-cCCc---cccCCCcccccHH---HHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 124 DKEA-GGNK---VTPANSDLANSDA---LQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 124 ~~~~-g~n~---V~~a~~D~ans~a---L~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
.+. +.+. |++++....-..+ +..++.....+...|.|+||.|+.+.
T Consensus 80 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 80 -MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp -HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred -HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 111 1222 3343322111111 23334444447789999999999753
No 69
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.52 E-value=0.00011 Score=73.07 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
....|+|||+.++||||||++|++..|.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~ 51 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN 51 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 3468999999999999999999998763
No 70
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.51 E-value=0.00011 Score=69.17 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
..+|+|||+.++|||||+++|+|..+-+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~ 30 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE 30 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC
Confidence 46899999999999999999999875443
No 71
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.51 E-value=5.5e-05 Score=73.43 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
...+|+|||+.++||||||++|++..|.+....+.|.......+... ....-..+.+.||... +..+... .
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~--~~~~~~~------~ 85 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQER--FRTITSS------Y 85 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGG--GCTTHHH------H
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-CEEEEEEEEECCCcHh--hhhhHHH------H
Confidence 34689999999999999999999987744433333322211111111 0011133557777421 1111110 1
Q ss_pred hhcCCc---cccCCCccc---ccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 126 EAGGNK---VTPANSDLA---NSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~a---ns~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+.+.+. |++++..-. -...+..+....+.+...|.|+||.|+.+.
T Consensus 86 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 111121 333332110 012234455565668899999999999753
No 72
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.50 E-value=0.00014 Score=68.29 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.+|+|||+.++|||||+++|++..|.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~ 29 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV 29 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 37999999999999999999988763
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.49 E-value=0.00011 Score=69.12 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.+|+|||+.++|||||+++|++..|.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~ 29 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFR 29 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 47999999999999999999998763
No 74
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.49 E-value=6.8e-05 Score=70.75 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
.+|+|||+.++||||||++|++..|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~ 34 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDK 34 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcC
Confidence 5899999999999999999998876433
No 75
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.46 E-value=0.00011 Score=70.70 Aligned_cols=113 Identities=17% Similarity=0.114 Sum_probs=58.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~ 126 (767)
..+|+|||+.++||||||++|++..|.+....+.+.......+ ......---.+.+.||.. ++..+ ...+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~ 79 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII-NVGGKYVKLQIWDTAGQE--RFRSV-------TRSY 79 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEE-EETTEEEEEEEEEECCSG--GGHHH-------HHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEE-EECCEEEEEEEEeCCCcH--HHHHH-------HHHH
Confidence 4689999999999999999999988744333332211111111 010000112355677732 22221 1222
Q ss_pred hc-CCc---cccCCCccccc---HHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 127 AG-GNK---VTPANSDLANS---DALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 127 ~g-~n~---V~~a~~D~ans---~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.. .+. |++++..-.-. ..+..++.....+...|.|+||+|+.+
T Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 80 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 21 221 33333211111 112334555556889999999999863
No 76
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.46 E-value=0.00019 Score=70.10 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=60.4
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHH
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t 123 (767)
....+.|+|||+.+|||||||++|++..|.+... ..|.......+... ...---.+.+.||.. ++..+....-.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~-~~~~~~~l~Dt~G~~--~~~~~~~~~~~-- 84 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE-PTKADSYRKKVVLD-GEEVQIDILDTAGQE--DYAAIRDNYFR-- 84 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-TTCCEEEEEEEEET-TEEEEEEEEECCCTT--CCHHHHHHHHH--
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CccceEEEEEEEEC-CEEEEEEEEcCCChh--hhHHHHHHHHh--
Confidence 4566899999999999999999999887633322 22222211111111 001123456778742 33333322111
Q ss_pred hhhhcCCc---cccCCCccc--c-cHHH-HHHHHhCcCCCceEEEeeccCCCC
Q 004228 124 DKEAGGNK---VTPANSDLA--N-SDAL-QIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 124 ~~~~g~n~---V~~a~~D~a--n-s~aL-~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.+. |++++..-. + ...+ .+.+.....+...|.|+||.|+.+
T Consensus 85 ----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 85 ----SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred ----hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 1121 232221100 0 0111 233444456889999999999864
No 77
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.00029 Score=76.59 Aligned_cols=118 Identities=21% Similarity=0.203 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceeehhcccCCcccccccccCCCCcccCh---hHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDF---SEIRREIQ 120 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~---~~i~~~i~ 120 (767)
...+.|+|||..++||||+|++|+|..+ ..+ ....|+.+..-.+... .....+++.||...... +.+....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~- 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDG---YFRYQIIDTPGLLDRPISERNEIEKQA- 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEET---TEEEEEEECTTTSSSCSTTSCHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEec---CceEEEEeCCCccccchhhhhHHHHHH-
Confidence 4678999999999999999999999874 333 2355665433222111 11234567777532221 2222111
Q ss_pred HHHhhhhcCCc---cccCCC----ccccc-HHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 121 AQTDKEAGGNK---VTPANS----DLANS-DALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 121 ~~t~~~~g~n~---V~~a~~----D~ans-~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
........+. |+++.. |+.++ ..+..++..-+ +..+|.|+||.|+.+
T Consensus 240 -~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 240 -ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVAD 294 (357)
T ss_dssp -HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCC
T ss_pred -HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCC
Confidence 1111111222 444332 33332 22333444333 789999999999975
No 78
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.44 E-value=8.6e-05 Score=71.77 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
...+|+|||..++||||||++|+|..|.+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 34 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE 34 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC
Confidence 45689999999999999999999998643
No 79
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.44 E-value=6.8e-05 Score=73.21 Aligned_cols=113 Identities=14% Similarity=0.056 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCC--CccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g--~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t 123 (767)
...+|+|||+.++||||||++|++..|...... .+|+....+.+.. ...--.+.+.||.. ++..+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~Dt~G~~--~~~~~~~~----- 91 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN---ELHKFLIWDTAGQE--RFHSLAPM----- 91 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS---SEEEEEEEEECCSG--GGGGGTHH-----
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC---EEEEEEEEcCCCch--hhHhhhHH-----
Confidence 356899999999999999999999876332221 1222222121111 01112355677732 12211111
Q ss_pred hhhhcCCc---cccCCCcccc---cHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 124 DKEAGGNK---VTPANSDLAN---SDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 124 ~~~~g~n~---V~~a~~D~an---s~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+.+.+. |++++..-.- ...+..++...+.+...|.|+||.|+.+
T Consensus 92 -~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 92 -YYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp -HHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -hhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 1111221 3333321111 1123445555566889999999999974
No 80
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.43 E-value=4e-05 Score=72.89 Aligned_cols=114 Identities=13% Similarity=0.065 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~ 126 (767)
-.+|+|||+.++|||||+++|++..|.+....+.+.......+... .....-.+.+.||.. .+..+... .+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~--~~~~~~~~------~~ 84 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQE--RFRSLIPS------YI 84 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSG--GGGGGSHH------HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEECCCcH--HHHHHHHH------Hh
Confidence 3589999999999999999999887744433333322211111110 001123455677732 12111111 01
Q ss_pred hcCCc---cccCCCcc--cc-cHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 127 AGGNK---VTPANSDL--AN-SDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 127 ~g~n~---V~~a~~D~--an-s~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+.+. |++++..- .+ ...+..+....+.+...|.|+||.|+.+
T Consensus 85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 85 RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 12222 33333211 11 1112333333345788999999999874
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.42 E-value=5.1e-05 Score=71.37 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
..+|+|||+.++|||||+++|++..|.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~ 31 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFT 31 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 358999999999999999999998763
No 82
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.38 E-value=0.00016 Score=70.93 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
....|+|||+.++||||||++|++..|.+....+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t 40 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT 40 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc
Confidence 3468999999999999999999999875444333
No 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.38 E-value=0.00017 Score=70.70 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCC--ccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~--~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t 123 (767)
...+|+|||+.++|||||+++|++..|.+....+ ++.....+.+.. ....-.+.+.||.. ++..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~~l~i~Dt~G~~--~~~~~~~~~---- 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDG---ERTVLQLWDTAGQE--RFRSIAKSY---- 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETT---EEEEEEEEECTTCT--TCHHHHHHH----
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECC---EEEEEEEEECCCCc--chhhhHHHH----
Confidence 4579999999999999999999998764332221 111111111110 01123456778742 233222211
Q ss_pred hhhhcCCc---cccCCCccc--c-cHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 124 DKEAGGNK---VTPANSDLA--N-SDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 124 ~~~~g~n~---V~~a~~D~a--n-s~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.+.+. |++++.... + ..-+..++.....+...|.|+||.|+.+
T Consensus 98 --~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 98 --FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp --HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred --HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 111222 333332111 1 1123445555556789999999999863
No 84
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.38 E-value=0.00023 Score=69.01 Aligned_cols=30 Identities=20% Similarity=0.394 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
...+|+|||+.++|||||+++|++..|.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~ 48 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDR 48 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 346899999999999999999998877443
No 85
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.38 E-value=0.00015 Score=71.35 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
....+|+|||+.++||||||++|++..|.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~ 50 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS 50 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence 35678999999999999999999999874
No 86
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.38 E-value=0.00015 Score=71.51 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~ 76 (767)
...+|+|||+.++||||||++|++..|.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~ 54 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDS 54 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccC
Confidence 3568999999999999999999998874443
No 87
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.37 E-value=0.0001 Score=71.62 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
...+|+|||+.++||||||++|++..|.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~ 53 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHD 53 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC
Confidence 356899999999999999999999877443
No 88
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.37 E-value=5e-05 Score=84.88 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHH-HHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRRE-IQAQT 123 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~-i~~~t 123 (767)
..+.|+|||..++|||||+++|+|..+.+... ..+|..+....+.... ..--.+++.||.. +|..+... ++...
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~l~liDTpG~~--d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHP--IGPVTLVDTPGLD--DVGELGRLRVEKAR 108 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETT--TEEEEEEECSSTT--CCCTTCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECC--CCeEEEEECcCCC--cccchhHHHHHHHH
Confidence 56789999999999999999999998644332 2445544333332211 1123466788743 23222110 11111
Q ss_pred hhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcc
Q 004228 124 DKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 172 (767)
Q Consensus 124 ~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gt 172 (767)
..+.+.+- |+++...-.....++.+++ .+...|.|+||.|+.+...
T Consensus 109 ~~l~~aD~vllVvD~~~~~~~~~~l~~l~~---~~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTPYEDDVVNLFKE---MEIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp HHHTSCSEEEEECSSSCCHHHHHHHHHHHH---TTCCEEEECCCCTTTTCCC
T ss_pred HHHhcCCEEEEEEeCCChHHHHHHHHHHHh---cCCCEEEEEeCcCCCCccH
Confidence 11112222 5555211122233444444 4889999999999987554
No 89
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.36 E-value=0.00069 Score=67.12 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhH-HHHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE-IRREIQAQT 123 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~-i~~~i~~~t 123 (767)
-..|.|+|+|+.++|||||+++|++..|.+.. .+..|....... ..--.+.+.||.. .+.. +...+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~---~~~~~~~~~~~~----~~~~~l~Dt~G~~--~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV---VSQEPLSAADYD----GSGVTLVDFPGHV--KLRYKLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC---CCSSCEEETTGG----GSSCEEEECCCCG--GGTHHHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee---eecCceEEEEee----CceEEEEECCCcH--HHHHHHHHHHHhcc
Confidence 46799999999999999999999998763321 112222211110 1122355778753 2222 222221111
Q ss_pred hhhhcCCc---cccCCCcccc-cHHHH----HHHHh---CcCCCceEEEeeccCCCCCc
Q 004228 124 DKEAGGNK---VTPANSDLAN-SDALQ----IAGIA---DPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 124 ~~~~g~n~---V~~a~~D~an-s~aL~----la~~v---DP~G~RTIGVlTK~Dl~d~g 171 (767)
...+. |+++..|... ..+.+ +.... .+.+.+.|.|+||+|+.+..
T Consensus 81 ---~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 81 ---KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp ---GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ---ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 01111 4444422111 11112 22111 45689999999999998643
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.36 E-value=0.00033 Score=65.64 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|+|||+.++|||||+++|++..|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 699999999999999999998876
No 91
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.36 E-value=0.00031 Score=68.24 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.+|+|||+.++||||||++|++..|.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~ 48 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFN 48 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 57999999999999999999988763
No 92
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.36 E-value=0.00015 Score=70.55 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
...+|+|||+.++||||||++|++..|.+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 50 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTP 50 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCC
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCc
Confidence 45689999999999999999999987643
No 93
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=0.00013 Score=70.46 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~ 76 (767)
.-.+|+|||+.++||||||++|++..|.+..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~ 44 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPEL 44 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccC
Confidence 3458999999999999999999998874443
No 94
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.34 E-value=0.0001 Score=71.53 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.-.+|+|||+.++||||||++|+|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999987
No 95
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.34 E-value=0.00016 Score=71.06 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
...|+|||+.++||||||++|++..|.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT 34 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999998763
No 96
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.31 E-value=0.00027 Score=67.82 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.....|+|||+.++|||||+++|++..|.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~ 44 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV 44 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 34558899999999999999999988763
No 97
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.30 E-value=0.00031 Score=68.09 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
..+|+|||+.++|||||+++|++..|.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~ 50 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPA 50 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 45899999999999999999999887443
No 98
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.29 E-value=0.00045 Score=66.81 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.-..|+|||+.++|||||+++|++..|.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~ 42 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV 42 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4579999999999999999999988764
No 99
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.28 E-value=0.00026 Score=70.30 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
....|+|||+.++|||||+++|++..|-+....+.+.......+. .....-.-.+.+.||.. .+..+ ...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~--~~~~~-------~~~ 94 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE-INGEKVKLQIWDTAGQE--RFRSI-------TQS 94 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSG--GGHHH-------HGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE-ECCEEEEEEEEECCCcH--HHHHH-------HHH
Confidence 346899999999999999999998876332222222111000110 00001112345667742 22211 222
Q ss_pred hhc-CCc---cccCCCcccc---cHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EAG-GNK---VTPANSDLAN---SDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~g-~n~---V~~a~~D~an---s~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+.. .+. |.+++..-.- ...+..++...+.+...|.|.||.|+.+
T Consensus 95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 222 221 3333221100 1223445555566788999999999864
No 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.28 E-value=0.0007 Score=65.15 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.-.+|+|+|+.++|||||+++|++..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999876
No 101
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.24 E-value=0.00022 Score=68.23 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
-+.|+|||+.++|||||+++|++..|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~ 33 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFVD 33 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence 3689999999999999999999776643
No 102
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.22 E-value=0.00025 Score=68.84 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.-..|+|||+.+||||||+++|++..|
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC
Confidence 346899999999999999999998776
No 103
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.22 E-value=0.00019 Score=69.79 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcccc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~ 76 (767)
..+|+|||+.++|||||+++|++..|.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~ 50 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH 50 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC--
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC
Confidence 458999999999999999999998875443
No 104
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.22 E-value=8.5e-05 Score=80.73 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcce
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPL 85 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl 85 (767)
+|.|++||..||||||||++|++..+.......+|..|.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~ 196 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN 196 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce
Confidence 789999999999999999999998632212234666665
No 105
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.20 E-value=0.00016 Score=71.09 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
..|+|||+.++|||||+++|++..|.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~ 51 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP 51 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 47999999999999999999998763
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.20 E-value=0.00028 Score=69.44 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=54.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcccc--CCCccCcceeehhcccCCcccccccccCCCCcccChhH-HHHHHHHHHh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG--NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE-IRREIQAQTD 124 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~--~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~-i~~~i~~~t~ 124 (767)
..|++||..+|||||||++|+|..|.... ..+.|+..-.+.+.. -..+.+.||....+... .+..+.....
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~------~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD------GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET------TEEEEECCCCC------CCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC------CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 47999999999999999999998753321 123444322111111 12345677754322110 1111222222
Q ss_pred hhhc--CC--c---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 125 KEAG--GN--K---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 125 ~~~g--~n--~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
.+.. .+ . |.++....... ..++.+.+...+...+.|.||+|+...|
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVDSNIAVLVLLTKADKLASG 153 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHTTCCEEEEEECGGGSCHH
T ss_pred HHHHhhhcccEEEEEEECCCCCchh-HHHHHHHHHHcCCCeEEEEecccCCCch
Confidence 2211 11 1 23332222111 1233333444578889999999988654
No 107
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.19 E-value=0.00043 Score=65.23 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-..|+|+|+.++|||||+++|++..|
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~ 32 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEV 32 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998876
No 108
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.18 E-value=0.0004 Score=66.86 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-.+|+|||+.++|||||+++|++..|
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999976
No 109
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.17 E-value=0.0002 Score=67.59 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
+.+|+|||+.++|||||+++|+|..+-
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~ 28 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGD 28 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCc
Confidence 468999999999999999999987653
No 110
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00043 Score=69.33 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
...+|+|||+.++||||||++|++..|...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~ 41 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD 41 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCC
Confidence 356899999999999999999999887443
No 111
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.16 E-value=0.00012 Score=69.81 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
-.+|+|||+.++|||||+++|++..|.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~ 32 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFG 32 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCC
Confidence 458999999999999999999998763
No 112
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.15 E-value=0.00099 Score=65.79 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCcccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~ 76 (767)
..+.|+|||+.++|||||+++|++..|.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~ 36 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ 36 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc
Confidence 3578999999999999999999988764433
No 113
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.14 E-value=0.00032 Score=68.49 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=25.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
...+|+|||+.++|||||+++|++..|.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~ 56 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE 56 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc
Confidence 456899999999999999999999877433
No 114
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.14 E-value=0.00019 Score=67.40 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
..|+|||+.++|||||+++|++..|.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~ 33 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHE 33 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 479999999999999999999877644
No 115
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.14 E-value=0.0008 Score=75.09 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccC----CCccCcceeehhcccCCcccccccccCCCCcc--c---ChhHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN----DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF--Y---DFSEIR 116 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~----g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~--~---d~~~i~ 116 (767)
..|.|+|||..+|||||||++|+|..+..+.. ...+|..+-..+... .......+.+.+|... . ++..+.
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~-~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQES-NVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecC-ccccccchhhhhhhhhccccchhhhHHH
Confidence 44679999999999999999999996432211 112222211111110 0000111223333221 1 122333
Q ss_pred HHHH----HHHhhhhcCC---------c-------cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 117 REIQ----AQTDKEAGGN---------K-------VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 117 ~~i~----~~t~~~~g~n---------~-------V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
+.|. .....+.+.+ . |+|+..++...| +.+++.+. .+.+.|.|+||+|.+.+.
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKLD-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHTC-SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHHh-hCCCEEEEEcchhccchH
Confidence 3333 2233332211 0 345655665555 68899998 789999999999999643
No 116
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.14 E-value=0.0001 Score=72.34 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
..+|+|||+.++||||||++|++..|..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~ 60 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTE 60 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 5699999999999999999999987643
No 117
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.12 E-value=0.00061 Score=67.14 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
...+|+|||+.++|||||++.|++..|.+....+.+.......+... .....-.+.+.||.. ++..+. ..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~--~~~~~~-------~~ 97 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQE--RFRTIT-------QS 97 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-TEEEEEEEECCTTCG--GGHHHH-------HH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCcH--hHHHHH-------HH
Confidence 35689999999999999999999887633222221111111111100 001123455777742 222222 11
Q ss_pred hh-cCCc---cccCCCccc--c-cHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EA-GGNK---VTPANSDLA--N-SDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~a--n-s~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+. +.+. |++++..-. + ...+..++...+.+...|.|+||.|+.+
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 22 1221 333322111 1 1123334444456788999999999864
No 118
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.12 E-value=0.00018 Score=82.59 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~ 126 (767)
.|.|+|+|..++||||||++|++..+.....++.|+......+... ....-.|++.||. .+|..++ .++
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~--~g~~i~~iDTPGh--e~f~~~~-------~~~ 72 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP--SGEKITFLDTPGH--AAFSAMR-------ARG 72 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS--CSSCCBCEECSSS--CCTTTSB-------BSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC--CCCEEEEEECCCh--HHHHHHH-------HHH
Confidence 5899999999999999999999987655555566664332222111 1122457788883 2222111 111
Q ss_pred hc-CCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 127 AG-GNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 127 ~g-~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+. .+- |++++.....+. ...+..+...|.+.|.|+||+|+.+.
T Consensus 73 ~~~aD~vILVVDa~dg~~~qt-~e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 73 TQVTDIVILVVAADDGVMKQT-VESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp SBSBSSCEEECBSSSCCCHHH-HHHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HccCCEEEEEEECCCCccHHH-HHHHHHHHHcCCcEEEEEeccccccc
Confidence 11 111 666665443332 34444444568899999999999753
No 119
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.11 E-value=0.00011 Score=70.51 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=10.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
...|+|||+.++|||||+++|++..|
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~ 33 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF 33 (183)
T ss_dssp EEEEEEECCCCC--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 45899999999999999999998876
No 120
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.11 E-value=0.0012 Score=64.50 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
..-..|+|||+.++||||++++|++..|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~ 48 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRL 48 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456999999999999999999998876
No 121
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.10 E-value=0.00057 Score=66.36 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
..|+|||+.++|||||+++|++..|
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~ 43 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF 43 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999998876
No 122
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.09 E-value=0.0018 Score=72.21 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~ 76 (767)
.|+|||+.+|||||||+.|+|..+.+.+
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 4799999999999999999999764344
No 123
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=0.00026 Score=70.00 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
..|+|||+.++|||||+++|++..|.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~ 51 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP 51 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999998763
No 124
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.08 E-value=0.00019 Score=68.76 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
..|+|||+.++|||||+++|++..|.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~ 31 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP 31 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 47999999999999999999988763
No 125
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.07 E-value=0.00048 Score=67.41 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
...+|+|||+.++||||||+.|.|. |.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~ 47 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK-MSPN 47 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC-CCGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc-CCCc
Confidence 5679999999999999999999996 4343
No 126
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.04 E-value=0.0014 Score=75.07 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=23.6
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 44 ~i~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
...-.+|++||..|||||||+++|+|..|.
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~ 67 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD 67 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 455678999999999999999999999763
No 127
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.00 E-value=0.00054 Score=65.55 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.-.+|+|||+.+||||||+++|++..+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc
Confidence 457999999999999999999998766
No 128
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.00 E-value=0.0011 Score=65.25 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
..-..|+|||+.+||||||+++|++..|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~ 50 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 50 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4556999999999999999999999865
No 129
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.99 E-value=0.00073 Score=66.40 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
...+|+|||+.++||||||+.|+|..+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~ 48 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG 48 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC
Confidence 456899999999999999999988654
No 130
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.97 E-value=0.00062 Score=66.49 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-....|+|||+.++|||||+++|++..|
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~ 45 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY 45 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 3456899999999999999999999875
No 131
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.96 E-value=0.00086 Score=63.92 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
--.|+|||+.++|||||++.+++..|.+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~ 34 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV 34 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 3479999999999999999999988744
No 132
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.95 E-value=0.00038 Score=66.44 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
...+|+|||+.++|||||++++++..|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~ 33 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF 33 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999998875
No 133
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.94 E-value=0.00019 Score=70.92 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
..-.+|+|||+.++|||||++.+++..|.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~ 56 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP 56 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 34569999999999999999999987663
No 134
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.92 E-value=0.00071 Score=66.16 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.-.+|+|||+.++|||||+++|++..|.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~ 55 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV 55 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc
Confidence 3468999999999999999999988763
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.91 E-value=0.00097 Score=73.67 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.-..|+++|..++|||||+++|+|..+
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc
Confidence 456899999999999999999999743
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.90 E-value=0.00051 Score=68.42 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-..|+|||+.++|||||+++|++..|
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~ 59 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF 59 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC---
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999999876
No 137
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.86 E-value=0.00035 Score=68.00 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.-..|+|||+.++|||||+++|++..|
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 446899999999999999999999876
No 138
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.85 E-value=0.001 Score=72.64 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
..|+|||..++||||||++|.|...++.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~ 65 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPE 65 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 3679999999999999999988765443
No 139
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.81 E-value=0.0017 Score=62.62 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-..+.|+|||+.++|||||+++|++..+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~ 41 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI 41 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568999999999999999999999864
No 140
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.80 E-value=0.00064 Score=66.10 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.-+|+|||+.++|||||++.|++..|.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~ 47 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFI 47 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCC
Confidence 358999999999999999999998763
No 141
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.79 E-value=0.0014 Score=63.26 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.-..|+|||+.++|||||+++|++..|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 48 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV 48 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3568999999999999999999988763
No 142
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.76 E-value=0.0028 Score=60.95 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..+|+|||+.++||||||+.|.|.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999987
No 143
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.74 E-value=0.0011 Score=64.39 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
..--+|+|||+.++||||||+.+++..|.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~ 46 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV 46 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34458999999999999999999988763
No 144
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.73 E-value=0.0018 Score=73.48 Aligned_cols=109 Identities=18% Similarity=0.123 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC------cccc-CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHH
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF------LPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRRE 118 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f------lPr~-~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~ 118 (767)
.-+.|+++|..++|||||+++|+|... ++.. ..+.|.......+.. ....-.|++.||. .+|
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~~i~iiDtPGh--~~~------ 86 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL---ENYRITLVDAPGH--ADL------ 86 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE---TTEEEEECCCSSH--HHH------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE---CCEEEEEEECCCh--HHH------
Confidence 346899999999999999999999861 1111 011221110000000 0112345667762 111
Q ss_pred HHHHHhhhh-cCCc---cccCCCccccc--HHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 119 IQAQTDKEA-GGNK---VTPANSDLANS--DALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 119 i~~~t~~~~-g~n~---V~~a~~D~ans--~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+ ..+...+ ..+- |++|+..+..+ +.+.+++. .|.+.|.|+||+|+.+
T Consensus 87 ~-~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~---~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 87 I-RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH---FNIPIIVVITKSDNAG 139 (482)
T ss_dssp H-HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH---TTCCBCEEEECTTSSC
T ss_pred H-HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH---cCCCEEEEEECCCccc
Confidence 1 1111222 2222 66776654332 33444554 5788899999999985
No 145
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.75 E-value=0.00024 Score=69.82 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.-.+|+|||+.++|||||+++|++..|.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 56 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP 56 (204)
Confidence 3468999999999999999999988763
No 146
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.64 E-value=0.015 Score=65.67 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=58.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhhh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~~ 126 (767)
-.+|+|||+.++||||||++|++..|.. ...|+-+..-.+... ..--.+.+.||... +..+ ...+
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~~---~~~T~~~~~~~~~~~---~~~~~l~Dt~G~~~--~~~~-------~~~~ 386 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYK---NVKFNVWDVGGQDK--IRPL-------WRHY 386 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEEEESS---SCEEEEEEECCCGG--GSGG-------GGGG
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC---cCCccceeEEEEEeC---CEEEEEEECCCcHH--HHHH-------HHHH
Confidence 3589999999999999999999987522 233544333222111 11123556777321 1111 1222
Q ss_pred hc-CCc---cccCCCcccccHHH----HHHHHhCcCCCceEEEeeccCCCCC
Q 004228 127 AG-GNK---VTPANSDLANSDAL----QIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 127 ~g-~n~---V~~a~~D~ans~aL----~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
.. .+. |+++...-.-.++. .+.+.....+...|.|+||.|+.+.
T Consensus 387 ~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 387 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp GTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred hccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 22 221 44443321111121 2223333458899999999999753
No 147
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.63 E-value=0.00085 Score=76.46 Aligned_cols=109 Identities=21% Similarity=0.292 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
..|.|+|+|..++||||||++|.+..+.....++.|.......+.. ....-.|++.||. .+|...+ .+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~---~~~~i~~iDTPGh--e~f~~~~-------~~ 70 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET---ENGMITFLDTPGH--AAFTSMR-------AR 70 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT---TSSCCCEECCCTT--TCCTTSB-------CS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE---CCEEEEEEECCCc--HHHHHHH-------HH
Confidence 3589999999999999999999986543333334443221111111 1122357788884 2332211 11
Q ss_pred hhc-CCc---cccCCCccc--ccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EAG-GNK---VTPANSDLA--NSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~g-~n~---V~~a~~D~a--ns~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
.+. .+- |++++.... +-+.+.+++. .|...|.|+||+|+.+
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~---~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKA---AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHH---TTCCEEEEEECSSSST
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHh---cCceEEEEEEeccccc
Confidence 111 111 566655433 3344555554 5778999999999975
No 148
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.00083 Score=73.83 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK 107 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~ 107 (767)
..++|++||..|+|||||+|+|+|.+-..-.--.|||.|..=.+... ...-.|++.||-
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~---~~~i~l~D~pGl 129 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK---GAKIQMLDLPGI 129 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET---TEEEEEEECGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC---CcEEEEEeCCCc
Confidence 45799999999999999999999987433333589999975433322 233467788874
No 149
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.62 E-value=0.00093 Score=65.90 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
....|+|||+.++|||||++.|++..|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~ 34 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF 34 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345899999999999999999998876
No 150
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.62 E-value=0.0021 Score=68.25 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=57.3
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcccc--CCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG--NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~--~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
.+|+|||+.++|||||++.|++... +.. .-..|+-+....+.-. ...--.+.+.||.. ++ ...........
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~-~~~~~~~~~Ti~~~~~~~~~~--~~~~l~i~Dt~G~~--~~--~~~~~~~~~~~ 76 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS-AFDTRRLGATIDVEHSHLRFL--GNMTLNLWDCGGQD--VF--MENYFTKQKDH 76 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC-TGGGGGCCCCCSEEEEEEEET--TTEEEEEEEECCSH--HH--HHHHHTTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CccccCcCCccceEEEEEEeC--CceEEEEEECCCcH--HH--hhhhhhhHHHH
Confidence 3799999999999999999988732 322 2344554433222211 01112345677742 11 11111111222
Q ss_pred hh-cCCc---cccCCCcccccHH------HHHHHHhCcCCCceEEEeeccCCCC
Q 004228 126 EA-GGNK---VTPANSDLANSDA------LQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 126 ~~-g~n~---V~~a~~D~ans~a------L~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+. +.+. |++++..-.-.+. +..++... .+...|.|+||.|+.+
T Consensus 77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSC
T ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEecccccc
Confidence 22 2222 4444332111111 22223333 3689999999999985
No 151
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0032 Score=63.30 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
...+|||||+.++||||||+.++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999999854
No 152
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.53 E-value=0.0013 Score=70.79 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=22.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
+|+|||+.++||||||+.|++..|
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~ 190 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI 190 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC
T ss_pred eEEEECCCCccHHHHHHHHhCCCC
Confidence 799999999999999999999876
No 153
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.50 E-value=0.00059 Score=68.00 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCccccC--CCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHH
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~--g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~ 122 (767)
....+|+|||+.++|||||++++++-.|..... -.+|+....+.+... ...-.+.+.||... +..+...
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---~~~~~i~Dt~G~~~--~~~~~~~---- 83 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG---PIKFNVWDTAGQEK--FGGLRDG---- 83 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTE---EEEEEEEEECSGGG--TSCCCHH----
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE---EEEEEEEeCCChHH--HhHHHHH----
Confidence 344689999999999999999954433433211 124444443332211 11123456666321 1111110
Q ss_pred HhhhhcCCc---cccCCCccccc---HHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 123 TDKEAGGNK---VTPANSDLANS---DALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 123 t~~~~g~n~---V~~a~~D~ans---~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
.+.+.+. |++++....-. ..+..+...- .+...|.|+||.|+.+.
T Consensus 84 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 84 --YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp --HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSC
T ss_pred --HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccc
Confidence 0111221 33333211111 1123333332 36789999999999764
No 154
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.50 E-value=0.00075 Score=78.51 Aligned_cols=112 Identities=19% Similarity=0.266 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcc--eeehhc----ccCC-ccc--------ccccccCCCCccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP--LVLQLL----QTKT-DEE--------YGEFLHLPGKRFY 110 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~P--l~l~l~----~~~~-~~~--------~~~f~~~pg~~~~ 110 (767)
..|.|+|||..++|||||+++|.|..+.....|..|+-. ..+... .... ... --.|++.||. .
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh--e 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH--E 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT--S
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc--H
Confidence 468999999999999999999998755333333344321 111000 0000 000 1356788884 3
Q ss_pred ChhHHHHHHHHHHhhhhc-CCc---cccCCCcccc--cHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 111 DFSEIRREIQAQTDKEAG-GNK---VTPANSDLAN--SDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 111 d~~~i~~~i~~~t~~~~g-~n~---V~~a~~D~an--s~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
+|..++ .+.+. .+- |++++..+.. -+.+++++. .+...|.|+||+|+.+
T Consensus 82 ~F~~~~-------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~---~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLR-------KRGGALADLAILIVDINEGFKPQTQEALNILRM---YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSB-------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH---TTCCEEEEEECGGGST
T ss_pred HHHHHH-------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH---cCCeEEEEeccccccc
Confidence 333221 12111 111 6666654432 234455554 5788999999999975
No 155
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0061 Score=71.12 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-....|++||..++|||||+++|++..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 356799999999999999999999764
No 156
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.32 E-value=0.0028 Score=72.65 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCC----------------------CccCcceeehhcccCCccccccccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND----------------------ICTRRPLVLQLLQTKTDEEYGEFLH 103 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g----------------------~~TR~Pl~l~l~~~~~~~~~~~f~~ 103 (767)
..+.|++||..+||||||+|+|++..-.....| +.|.....+.+.. ...--.+++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~~i~liD 88 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY---KDYLINLLD 88 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE---TTEEEEEEC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe---CCEEEEEEE
Confidence 457999999999999999999962211110000 1111111111110 011124678
Q ss_pred CCCCcccChhHHHHHHHHHHhhhh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 104 LPGKRFYDFSEIRREIQAQTDKEA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 104 ~pg~~~~d~~~i~~~i~~~t~~~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
.||. .+|... +.+++ ..+. |+++...+..+ ...+.+.+...+...|.|+||+|+...
T Consensus 89 TPG~--~df~~~-------~~~~l~~aD~allVvDa~~g~~~~-t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGH--ADFTED-------TYRTLTAVDSALMVIDAAKGVEPR-TIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCS--TTCCHH-------HHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred CCCc--hhHHHH-------HHHHHHhCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 8884 444331 12222 1222 66666554333 345666666678999999999999653
No 157
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.32 E-value=0.0029 Score=62.70 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
..+|+|||+.++|||||++.|++..|
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999876
No 158
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.24 E-value=0.007 Score=63.31 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.|+|||..+|||||||++|+|...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999853
No 159
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.14 E-value=0.0036 Score=65.93 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
....|+|||+.++|||||++.+++..|.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~ 181 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP 181 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC
Confidence 4579999999999999999999987663
No 160
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.07 E-value=0.014 Score=64.52 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
....|+|||..++|||||+++|+|.
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~ 31 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGV 31 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999987
No 161
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.04 E-value=0.0096 Score=67.83 Aligned_cols=123 Identities=20% Similarity=0.146 Sum_probs=67.1
Q ss_pred CeEEEEcCCCCchHHHHHHHh------CCCCccccCCCccCcceee------------h--hcccC-Cc-----------
Q 004228 48 PQVAVVGSQSSGKSSVLEALV------GRDFLPRGNDICTRRPLVL------------Q--LLQTK-TD----------- 95 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~------G~~flPr~~g~~TR~Pl~l------------~--l~~~~-~~----------- 95 (767)
..|+|||.++|||||++++|. |.+.+.+..+ |++|... . ..... .+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D--~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD--TFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--CSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc--ccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 379999999999999999999 8765444332 1222110 0 00000 00
Q ss_pred --ccc-cccccCCCCcccChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCc-eEEEeeccCCC
Q 004228 96 --EEY-GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYR-TIGIITKLDIM 168 (767)
Q Consensus 96 --~~~-~~f~~~pg~~~~d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~R-TIGVlTK~Dl~ 168 (767)
..+ ..+++.||....+. .+..++....+ ...... |++|.... +++..++.+... .. ++.|+||+|..
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~-~l~~el~~~~~-~i~pd~vllVvDa~~g~---~~~~~a~~~~~~-~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED-SLFEEMLQVAN-AIQPDNIVYVMDASIGQ---ACEAQAKAFKDK-VDVASVIVTKLDGH 253 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH-HHHHHHHHHHH-HHCCSEEEEEEETTCCT---THHHHHHHHHHH-HCCCCEEEECTTSC
T ss_pred HHCCCcEEEEeCCCCcccch-hHHHHHHHHHh-hhcCceEEEEEeccccc---cHHHHHHHHHhh-cCceEEEEeCCccc
Confidence 000 12557788654332 23333333222 122222 66665542 466777776543 34 68999999998
Q ss_pred CCcccHHHHH
Q 004228 169 DRGTDARNLL 178 (767)
Q Consensus 169 d~gtd~~~iL 178 (767)
.++..+.++.
T Consensus 254 ~~~g~~l~~~ 263 (504)
T 2j37_W 254 AKGGGALSAV 263 (504)
T ss_dssp CCCTHHHHHH
T ss_pred cchHHHHHHH
Confidence 7765554443
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.98 E-value=0.014 Score=65.90 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
-..-.|+|||..++|||||+++|++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35668999999999999999999754
No 163
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=95.95 E-value=0.01 Score=65.45 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
....|++||..++|||||+++|+|.
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~ 33 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGV 33 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999987
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=95.89 E-value=0.0092 Score=65.79 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
....|+++|..++|||||+++|++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999983
No 165
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.86 E-value=0.0076 Score=71.33 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhC---CCCcccc---CC-------------CccCcceeehhcccCCcccccccccCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVG---RDFLPRG---ND-------------ICTRRPLVLQLLQTKTDEEYGEFLHLPG 106 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G---~~flPr~---~g-------------~~TR~Pl~l~l~~~~~~~~~~~f~~~pg 106 (767)
..+.|+|||..++|||||+++|++ . +-..+ .+ ..|.......+.. ....-.+++.||
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~-~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPG 84 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGR-IHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW---EGHRVNIIDTPG 84 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSS-CC-------------------------CCSEEEEEE---TTEEEEEECCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCC-ccccccccCCceecccchhhhhcCceEeeeeEEEEE---CCeeEEEEECcC
Confidence 457899999999999999999994 3 21111 11 1111111111100 011134678888
Q ss_pred CcccChhH-HHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 107 KRFYDFSE-IRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 107 ~~~~d~~~-i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
. .+|.. +...+. ..+- |+++...+..++ ..+.+.+...+...|.|+||+|+...
T Consensus 85 ~--~df~~~~~~~l~-------~aD~~llVvDa~~g~~~~~-~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 H--VDFTVEVERSLR-------VLDGAVTVLDAQSGVEPQT-ETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp C--SSCCHHHHHHHH-------HCSEEEEEEETTTBSCHHH-HHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred C--cchHHHHHHHHH-------HCCEEEEEECCCCCCcHHH-HHHHHHHHHcCCCEEEEEECCCcccc
Confidence 5 34432 222121 1121 556655443322 34444455568999999999999864
No 166
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.83 E-value=0.012 Score=67.49 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCC----------------------ccCcceeehhcccCCccccccccc
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI----------------------CTRRPLVLQLLQTKTDEEYGEFLH 103 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~----------------------~TR~Pl~l~l~~~~~~~~~~~f~~ 103 (767)
....|+|||..++|||||+++|++..-.....|. +|.....+.+.. ....-.+++
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~---~~~~i~liD 88 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY---HDCLVNLLD 88 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE---TTEEEEEEC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE---CCeEEEEEE
Confidence 3478999999999999999999863110100010 010000000000 011124568
Q ss_pred CCCCcccChhHHHHHHHHHHhhhh-cCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCc
Q 004228 104 LPGKRFYDFSEIRREIQAQTDKEA-GGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 171 (767)
Q Consensus 104 ~pg~~~~d~~~i~~~i~~~t~~~~-g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~g 171 (767)
.||. .+|... +.+++ ..+. |+++...+..+ ...+.+.+...|...|.|+||+|+....
T Consensus 89 TPG~--~df~~~-------~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 89 TPGH--EDFSED-------TYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCCS--TTCCHH-------HHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred CCCC--hhHHHH-------HHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 8885 344321 11222 2222 56666554333 3566677777789999999999998654
No 167
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.79 E-value=0.0056 Score=64.46 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=34.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCcceeehhcccCCcccccccccCCCCcccC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD 111 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d 111 (767)
-..|+|||..|+|||||+|+|+|.....++. ..+||.+..+.+ ..-..+++.||-....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~------~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV------GKELELLDTPGILWPK 179 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE------TTTEEEEECCCCCCSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe------CCCEEEEECcCcCCCC
Confidence 3589999999999999999999987545543 257776532222 1224567888865443
No 168
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=95.74 E-value=0.0099 Score=66.45 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
....|++||..++|||||+++|++.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999654
No 169
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.67 E-value=0.012 Score=62.50 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
.|+|||+.+|||||||+.|.|....|.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 569999999999999999999743344
No 170
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.61 E-value=0.041 Score=61.64 Aligned_cols=56 Identities=21% Similarity=0.176 Sum_probs=40.5
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEE
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 192 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V 192 (767)
|++|.. .+++...++.+++...-+..|+||+|...+|..+..+..-...|+ -|+++
T Consensus 219 VvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI--~fig~ 274 (443)
T 3dm5_A 219 VIDGTI---GQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPI--KFIGT 274 (443)
T ss_dssp EEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSSCSSHHHHHHHHHTTCCCE--EEEEC
T ss_pred EEeCCC---chhHHHHHHHHHhhCCCeEEEEECCCCcccccHHHHHHHHHCCCE--EEEEc
Confidence 666664 467888999999888888899999999888776666655433443 34443
No 171
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.53 E-value=0.016 Score=58.40 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
.|||||+.++||||||..+++-.|.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~ 39 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFD 39 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCC
Confidence 7999999999999999999977773
No 172
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=95.49 E-value=0.014 Score=65.04 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
....|++||..++|||||+++|++..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998653
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=95.17 E-value=0.024 Score=67.02 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~ 68 (767)
..+.|+|||..++|||||+++|+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll 33 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERIL 33 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 174
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.95 E-value=0.017 Score=66.94 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
-..+.|+|||.+|+|||||||+|+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 3567899999999999999999999873
No 175
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.90 E-value=0.035 Score=64.53 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCC--Ccccc--C-----------CCccCcceeehhcccC-Ccc-cccccccCCCCcc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRD--FLPRG--N-----------DICTRRPLVLQLLQTK-TDE-EYGEFLHLPGKRF 109 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~--flPr~--~-----------g~~TR~Pl~l~l~~~~-~~~-~~~~f~~~pg~~~ 109 (767)
++.|++||..++|||||+++|++.. +-.++ . .+.|-..-.+.+.... ... ..-.+++.||.
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh-- 83 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH-- 83 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc--
Confidence 5689999999999999999996421 10111 0 0111111001111000 001 11236788884
Q ss_pred cChhH-HHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 110 YDFSE-IRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 110 ~d~~~-i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
.||.. +...+ ...+- |++|.....-+. +.........+...|.|+||+|+.+.
T Consensus 84 ~dF~~ev~r~l-------~~aD~aILVVDa~~gv~~qt-~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 84 VDFSYEVSRAL-------AACEGALLLIDASQGIEAQT-VANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp GGGHHHHHHHH-------HTCSEEEEEEETTTBCCHHH-HHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHH-------HhCCEEEEEEECCCCccHHH-HHHHHHHHHCCCCEEEEEeccCcccc
Confidence 45543 21111 11121 667766554333 23233333468889999999999753
No 176
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.86 E-value=0.023 Score=62.12 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=46.2
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC-----CCccccC-CCccCcceeehhcccCCc
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR-----DFLPRGN-DICTRRPLVLQLLQTKTD 95 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~-----~flPr~~-g~~TR~Pl~l~l~~~~~~ 95 (767)
+..+-.+++.|...+. -..|+|||..|+|||||+|+|+|. .....+. ..+||.+....+..
T Consensus 146 g~gi~~L~~~I~~~~~---------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---- 212 (369)
T 3ec1_A 146 GIGMAKVMEAINRYRE---------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---- 212 (369)
T ss_dssp TBTHHHHHHHHHHHHT---------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST----
T ss_pred CCCHHHHHHHHHhhcc---------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC----
Confidence 4445556666554321 137999999999999999999987 3223332 25777665544321
Q ss_pred ccccccccCCCCc
Q 004228 96 EEYGEFLHLPGKR 108 (767)
Q Consensus 96 ~~~~~f~~~pg~~ 108 (767)
-..+++.||..
T Consensus 213 --~~~liDtPG~~ 223 (369)
T 3ec1_A 213 --GATLYDTPGII 223 (369)
T ss_dssp --TCEEEECCSCC
T ss_pred --CeEEEeCCCcC
Confidence 14577889854
No 177
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.85 E-value=0.012 Score=64.98 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=22.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcceee
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVL 87 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~l 87 (767)
+|++||..|+|||||+++|+|... ..+ -..||+-|..-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~g 40 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVG 40 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCceE
Confidence 699999999999999999999873 333 23578877643
No 178
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=94.83 E-value=0.016 Score=63.78 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.|++||..++|||||+++|++.
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhCh
Confidence 6999999999999999999974
No 179
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=94.72 E-value=0.033 Score=62.06 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
....|++||..++|||||+++|++.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999853
No 180
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.65 E-value=0.016 Score=63.35 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=27.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcce
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPL 85 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl 85 (767)
.+|++||..|+|||||+++|+|..+..-.-..||+.|.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~ 40 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPN 40 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECce
Confidence 47999999999999999999998742222246787764
No 181
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.65 E-value=0.016 Score=55.72 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|+|||+.++||||||+.|+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999995
No 182
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=94.63 E-value=0.039 Score=60.28 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHHHHHhh
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~~~t~~ 125 (767)
+++.|++||..++|||||+++|+ -+ | .|.... ..........-.|++.||. .+|- +..+...
T Consensus 20 ~m~~i~iiG~~d~GKSTL~~~L~-----~~--g-iTi~~~---~~~~~~~~~~i~iiDtPGh--~~f~--~~~~~~~--- 81 (370)
T 2elf_A 20 HMANVAIIGTEKSGRTSLAANLG-----KK--G-TSSDIT---MYNNDKEGRNMVFVDAHSY--PKTL--KSLITAL--- 81 (370)
T ss_dssp CEEEEEEEESTTSSHHHHHHTTS-----EE--E-EESSSE---EEEECSSSSEEEEEECTTT--TTCH--HHHHHHH---
T ss_pred cCCEEEEECCCCCCHHHHHHHHH-----hC--C-EEEEee---EEEEecCCeEEEEEECCCh--HHHH--HHHHHHH---
Confidence 34489999999999999999998 11 1 121111 1111111122456788884 3342 1111111
Q ss_pred hhcCCc---cccCCCccccc--HHHHHHHHhCcCCCce-EEEee-ccCC
Q 004228 126 EAGGNK---VTPANSDLANS--DALQIAGIADPDGYRT-IGIIT-KLDI 167 (767)
Q Consensus 126 ~~g~n~---V~~a~~D~ans--~aL~la~~vDP~G~RT-IGVlT-K~Dl 167 (767)
.+.+- |++ +..+..+ +.+.+++. .|.+. |.|+| |+|+
T Consensus 82 -~~aD~ailVvd-~~g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 82 -NISDIAVLCIP-PQGLDAHTGECIIALDL---LGFKHGIIALTRSDST 125 (370)
T ss_dssp -HTCSEEEEEEC-TTCCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS
T ss_pred -HHCCEEEEEEc-CCCCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC
Confidence 12222 566 5555433 33444544 46677 99999 9999
No 183
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.58 E-value=0.044 Score=61.22 Aligned_cols=124 Identities=18% Similarity=0.132 Sum_probs=65.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCC------CCccccCC-------------------------CccCcceee--hhcccCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR------DFLPRGND-------------------------ICTRRPLVL--QLLQTKTD 95 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~------~flPr~~g-------------------------~~TR~Pl~l--~l~~~~~~ 95 (767)
-|+|+|.+++|||+++.+|.+. +.+-...+ ..||-|..+ ......
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~-- 178 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF-- 178 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh--
Confidence 6999999999999999999873 11111100 033444322 111100
Q ss_pred ccc-cccccCCCCcccChhHHHHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCC-CceEEEeeccCCCCC
Q 004228 96 EEY-GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDG-YRTIGIITKLDIMDR 170 (767)
Q Consensus 96 ~~~-~~f~~~pg~~~~d~~~i~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G-~RTIGVlTK~Dl~d~ 170 (767)
..+ -.+++.||....+ ..+..++... ........ |++|... +++...++.+.+.- .-+..|+||+|...+
T Consensus 179 ~~~D~vIIDT~G~~~~~-~~l~~~l~~i-~~~~~~d~vllVvda~~g---~~~~~~~~~~~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE-KGLLEEMKQI-KEITNPDEIILVIDGTIG---QQAGIQAKAFKEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp SSCSEEEEECCCSCSSH-HHHHHHHHHT-TSSSCCSEEEEEEEGGGG---GGHHHHHHHHHTTSCSCEEEEEECSSSCST
T ss_pred hCCCEEEEcCCCCcccc-HHHHHHHHHH-HHHhcCcceeEEeecccc---HHHHHHHHHHhhcccCCeEEEEeCCCCccc
Confidence 011 1245777754322 1233333221 11111111 4555443 46778888876543 338999999999876
Q ss_pred cccHHHHHc
Q 004228 171 GTDARNLLL 179 (767)
Q Consensus 171 gtd~~~iL~ 179 (767)
+..+..+..
T Consensus 254 ~g~~l~~~~ 262 (432)
T 2v3c_C 254 GGGALSAVA 262 (432)
T ss_dssp THHHHHHHH
T ss_pred hHHHHHHHH
Confidence 655555443
No 184
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.58 E-value=0.019 Score=56.03 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
...|+|||+.+|||||||+.|+|..|.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~ 31 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN 31 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999999763
No 185
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.58 E-value=0.027 Score=61.45 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=42.6
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCCC-----Ccc-ccC-CCccCcceeehhcccCC
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRD-----FLP-RGN-DICTRRPLVLQLLQTKT 94 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~~-----flP-r~~-g~~TR~Pl~l~l~~~~~ 94 (767)
+..+-.+++.|..... + ..|++||..|+|||||+|+|+|.. ..+ .+. ..+||.+....+..
T Consensus 144 g~gi~~L~~~l~~~~~--~-------~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~--- 211 (368)
T 3h2y_A 144 GQGIAELADAIEYYRG--G-------KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE--- 211 (368)
T ss_dssp CTTHHHHHHHHHHHHT--T-------SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---
T ss_pred CcCHHHHHhhhhhhcc--c-------ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---
Confidence 3445555555554321 1 479999999999999999999862 122 222 25677665544321
Q ss_pred cccccccccCCCCc
Q 004228 95 DEEYGEFLHLPGKR 108 (767)
Q Consensus 95 ~~~~~~f~~~pg~~ 108 (767)
-..+++.||..
T Consensus 212 ---~~~liDtPG~~ 222 (368)
T 3h2y_A 212 ---ESSLYDTPGII 222 (368)
T ss_dssp ---SCEEEECCCBC
T ss_pred ---CeEEEeCCCcC
Confidence 14578899854
No 186
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.53 E-value=0.02 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
...|+|||+.+|||||||+.|+|..|
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999976
No 187
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=94.48 E-value=0.025 Score=65.82 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=53.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC-cccc---CC-----------CccCcceeehhcccC-Cc-ccccccccCCCCcc
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF-LPRG---ND-----------ICTRRPLVLQLLQTK-TD-EEYGEFLHLPGKRF 109 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f-lPr~---~g-----------~~TR~Pl~l~l~~~~-~~-~~~~~f~~~pg~~~ 109 (767)
+..|++||..++|||||+++|++..- +... .. +.|...-.+.+.... .. ...-.+++.||.
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh-- 81 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH-- 81 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC--
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc--
Confidence 56899999999999999999975210 1111 00 111111111111000 00 111246788884
Q ss_pred cChhHH-HHHHHHHHhhhhcCCc---cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 110 YDFSEI-RREIQAQTDKEAGGNK---VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 110 ~d~~~i-~~~i~~~t~~~~g~n~---V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
.||... ...+. ..+- |++|.....-+.. .........+...|.|+||+|+.+.
T Consensus 82 ~dF~~ev~~~l~-------~aD~aILVVDa~~gv~~qt~-~~~~~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 82 VDFSYEVSRSLA-------ACEGALLVVDAGQGVEAQTL-ANCYTAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp GGGHHHHHHHHH-------HCSEEEEEEETTTCCCTHHH-HHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHH-------HCCEEEEEEECCCCCCHHHH-HHHHHHHHCCCCEEEeeeccCcccc
Confidence 455432 22111 1111 6667665544432 2222222357899999999999753
No 188
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=94.48 E-value=0.032 Score=62.68 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
....|++||..++|||||+++|++.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999863
No 189
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=94.46 E-value=0.066 Score=63.45 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G 69 (767)
..+.|+|||..++|||||+++|+.
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999953
No 190
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.41 E-value=0.016 Score=56.54 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..+|+|||+.++|||||++.++|.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999974
No 191
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.36 E-value=0.022 Score=62.82 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCccee
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLV 86 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl~ 86 (767)
..|++||..|||||||+++|+|..+.+.+ -..||+.|..
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 58999999999999999999998652333 3467887753
No 192
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.19 E-value=0.02 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
..+|+|||+.++|||||++.|++..|
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999999876
No 193
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=94.04 E-value=0.019 Score=66.75 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|+|||..++|||||+++|++.
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 45999999999999999999653
No 194
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.99 E-value=0.03 Score=55.59 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCCCCc
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~~fl 73 (767)
....+|+|||+.++||||||+.|++..|.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~ 53 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP 53 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 34568999999999999999999998764
No 195
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=93.91 E-value=0.026 Score=62.37 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcccc-CCCccCcce
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPL 85 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~-~g~~TR~Pl 85 (767)
.+|++||..|+||||||++|+|..+ ... -..||..|.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~ 60 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPN 60 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC--------------CCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCce
Confidence 5799999999999999999999975 333 246777664
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=93.91 E-value=0.06 Score=63.37 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
....|++||..++|||||+++|++..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc
Confidence 34679999999999999999999654
No 197
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.73 E-value=0.054 Score=60.53 Aligned_cols=45 Identities=24% Similarity=0.188 Sum_probs=32.4
Q ss_pred cccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHc
Q 004228 132 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLL 179 (767)
Q Consensus 132 V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~ 179 (767)
|++|.. .+++...++.+++...-|..|+||+|...++..+..+..
T Consensus 218 VlDa~~---gq~a~~~a~~f~~~~~~~gVIlTKlD~~a~~G~als~~~ 262 (433)
T 3kl4_A 218 VIDASI---GQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVV 262 (433)
T ss_dssp EEEGGG---GGGGHHHHHHHHHHCSSEEEEEECGGGCSCHHHHHHHHH
T ss_pred EEeCcc---chHHHHHHHHHhcccCCcEEEEecccccccchHHHHHHH
Confidence 556654 356778888887666678899999999877765555543
No 198
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.61 E-value=0.039 Score=57.34 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=24.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccC-CCccCc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRR 83 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~-g~~TR~ 83 (767)
..|+|||..++||||+|++|+|..+...+. -.+|+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~ 136 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKG 136 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccc
Confidence 799999999999999999999987644443 235554
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.34 E-value=0.027 Score=61.58 Aligned_cols=39 Identities=28% Similarity=0.327 Sum_probs=28.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCccee
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl~ 86 (767)
..|++||..|+|||||+++|+|.......-..||..|..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~ 40 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNV 40 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccce
Confidence 579999999999999999999875211122356766643
No 200
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.23 E-value=0.066 Score=59.44 Aligned_cols=112 Identities=19% Similarity=0.073 Sum_probs=57.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCC------ccCcceeehhcccCCcccccccccCCCCcccChhHHHHHHH
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI------CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQ 120 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~------~TR~Pl~l~l~~~~~~~~~~~f~~~pg~~~~d~~~i~~~i~ 120 (767)
-+.|++||..+|||||||++|+|... |....+ +||.....+- + .-.+..+.+.||..... ..+.+.++
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t~~~~v~q~---~-~~~~ltv~D~~g~~~~~-~~~~~~L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVTMERHPYKH---P-NIPNVVFWDLPGIGSTN-FPPDTYLE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC----CCCEEEEC---S-SCTTEEEEECCCGGGSS-CCHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecceeEEeccc---c-ccCCeeehHhhcccchH-HHHHHHHH
Confidence 34799999999999999999999843 322111 2232211111 1 01122344556543321 11221111
Q ss_pred HHHhhhhcCCccccCCCccc--ccHHHHHHHHhCcCCCceEEEeeccCCC
Q 004228 121 AQTDKEAGGNKVTPANSDLA--NSDALQIAGIADPDGYRTIGIITKLDIM 168 (767)
Q Consensus 121 ~~t~~~~g~n~V~~a~~D~a--ns~aL~la~~vDP~G~RTIGVlTK~Dl~ 168 (767)
.. . ...... .+. .+.. ...-+.+|+.+-..|.+.+.|+||||++
T Consensus 143 ~~-~-L~~~~~-~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 143 KM-K-FYEYDF-FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HT-T-GGGCSE-EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred Hc-C-CCccCC-eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 11 0 111111 111 1111 2333567777777799999999999985
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.19 E-value=0.049 Score=58.94 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
-..|.|+++|..|||||||||+|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999974
No 202
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=93.05 E-value=0.084 Score=59.40 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G 69 (767)
....|++||..++|||||+++|++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999963
No 203
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.87 E-value=0.044 Score=66.28 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
....|+|||..++|||||+++|++.
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999864
No 204
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=92.50 E-value=0.077 Score=65.76 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
-....|+|||..++|||||+++|++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 45568999999999999999999974
No 205
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=91.86 E-value=0.091 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCC---------CCchHHHHHHHhC
Q 004228 45 IELPQVAVVGSQ---------SSGKSSVLEALVG 69 (767)
Q Consensus 45 i~LPqIvVvG~Q---------SsGKSSvLEal~G 69 (767)
-...+|+|||+. ++||||||+.|++
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 345689999999 9999999999999
No 206
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.75 E-value=0.092 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999994
No 207
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.49 E-value=0.076 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-+++||..+|||||||..|+|.-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999984
No 208
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.49 E-value=0.094 Score=54.61 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-+++||..+|||||||..|+|.- +-.+|
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~--~p~~G 66 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL--SPSHG 66 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS--CCSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCCc
Confidence 47899999999999999999984 44444
No 209
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.42 E-value=0.073 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999994
No 210
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.35 E-value=0.093 Score=51.94 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~f 72 (767)
..|.|+|||..+|||||+++.|++..|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999987643
No 211
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.21 E-value=0.081 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|.|+|+|..+|||||++++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999875
No 212
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.06 E-value=0.089 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999994
No 213
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.89 E-value=0.094 Score=53.20 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999994
No 214
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.87 E-value=0.096 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||+.|+|.-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999984
No 215
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=90.85 E-value=0.12 Score=57.26 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcce
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPL 85 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~Pl 85 (767)
.+.|++||..+|||||||++|+|......+....|..|.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~ 195 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN 195 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecce
Confidence 467999999999999999999998531122234566664
No 216
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.83 E-value=0.091 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
-.-||++|.++||||||++.|.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999976
No 217
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.77 E-value=0.096 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-+++||..+|||||||..|+|.-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999984
No 218
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.76 E-value=0.097 Score=54.29 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999984
No 219
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.65 E-value=0.093 Score=53.56 Aligned_cols=23 Identities=52% Similarity=0.625 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999994
No 220
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.59 E-value=0.1 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999994
No 221
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.53 E-value=0.12 Score=56.14 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=25.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
-|+|+|..+|||||+|++|.|. +|...|.+|
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I~ 207 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQRLIT 207 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCceEEE
Confidence 5899999999999999999997 465666543
No 222
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.52 E-value=0.11 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999984
No 223
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.52 E-value=0.11 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999994
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.51 E-value=0.1 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|||..+||||||++.|.|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999986
No 225
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.45 E-value=0.11 Score=50.29 Aligned_cols=22 Identities=14% Similarity=0.514 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|.++||||||++.|.|.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 226
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.43 E-value=0.11 Score=51.43 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-+++||..+||||||++.|+|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999998
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.42 E-value=0.1 Score=51.54 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=24.8
Q ss_pred EEEEcCCCCchHHHHHHHhCCC--CccccCCCccCcc
Q 004228 50 VAVVGSQSSGKSSVLEALVGRD--FLPRGNDICTRRP 84 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~--flPr~~g~~TR~P 84 (767)
|||+|.++|||+||++.|.... .+...-..+||-|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999997541 1222334566643
No 228
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.25 E-value=0.15 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.++++|..+|||||||++|.|...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 689999999999999999999854
No 229
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.20 E-value=0.12 Score=53.99 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999984
No 230
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.20 E-value=0.11 Score=55.66 Aligned_cols=31 Identities=26% Similarity=0.547 Sum_probs=25.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
-++|+|..+|||||+|++|.|. +|..+|.+|
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~~~~g~i~ 203 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IPKEERIIS 203 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SCTTSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCCcEEE
Confidence 4899999999999999999998 355666543
No 231
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.19 E-value=0.12 Score=53.59 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999994
No 232
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.15 E-value=0.12 Score=53.44 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=25.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
-++++|..+|||||||..|+|.- +-.+|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEEE
Confidence 47899999999999999999994 44456544
No 233
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.10 E-value=0.12 Score=53.75 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999999994
No 234
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.09 E-value=0.12 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-++++|..+|||||||..|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999997
No 235
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.04 E-value=0.12 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47799999999999999999994
No 236
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.96 E-value=0.12 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|.++||||||++.|.|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999999984
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.93 E-value=0.22 Score=52.92 Aligned_cols=57 Identities=28% Similarity=0.280 Sum_probs=37.3
Q ss_pred ccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEEEeCChhhh
Q 004228 141 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 200 (767)
Q Consensus 141 ns~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V~nrsq~di 200 (767)
.+++++.++.+...-.-+-.|+||.|-..+|..+.+++.--..| .-|+++-.+ .+|+
T Consensus 235 ~~~~l~~a~~~~~~~~i~gvVlTk~D~~~~gG~~l~~~~~~~~P--i~~i~~Ge~-~~dl 291 (306)
T 1vma_A 235 GQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIP--IKFIGVGEK-AEDL 291 (306)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEECGGGCSCTTHHHHHHHHHCCC--EEEEECSSS-GGGE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCCCccchHHHHHHHHHHCCC--EEEEeCCCC-hhhc
Confidence 36677777777654455677899999888887777666543345 346666444 3454
No 238
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.91 E-value=0.13 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999994
No 239
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.87 E-value=0.12 Score=49.54 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-.+++|..+|||||+|+||.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999999876
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.83 E-value=0.16 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||||++.|.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999987
No 241
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.82 E-value=0.19 Score=54.77 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+|||||||++|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999984
No 242
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=89.80 E-value=0.2 Score=56.17 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.=-|+|||.+++|||+|||.|.|.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 345889999999999999999863
No 243
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=89.70 E-value=0.13 Score=60.34 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=62.9
Q ss_pred eEEEEcCCCCchHHHHHHH---hCCCCccccC--CCcc---Ccceee----hhcccCCccccc----ccccCCCCcccCh
Q 004228 49 QVAVVGSQSSGKSSVLEAL---VGRDFLPRGN--DICT---RRPLVL----QLLQTKTDEEYG----EFLHLPGKRFYDF 112 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal---~G~~flPr~~--g~~T---R~Pl~l----~l~~~~~~~~~~----~f~~~pg~~~~d~ 112 (767)
-|++||.-.+|||||.|+| +|.-- -.|+ +..| -.|.|- ++.-..-.-.|. .+++.|| ..||
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~-~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG--H~DF 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAIT-ELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPG--HMDF 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCS-SCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCC--SSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCc-cccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCC--cHHH
Confidence 3799999999999999999 45511 1111 1111 111110 000000011332 3568887 5677
Q ss_pred h-HHHHHHHHHHhhhhc-CCccccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 113 S-EIRREIQAQTDKEAG-GNKVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 113 ~-~i~~~i~~~t~~~~g-~n~V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
. ++.+.+ +.+. .=-|++|...+.-|. ..+.+.++..|.+.|.|+||.|....
T Consensus 81 ~~Ev~raL-----~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 81 LAEVYRSL-----SVLDGAILLISAKDGVQAQT-RILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHH-----TTCSEEECCEESSCTTCSHH-HHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred HHHHHHHH-----HHhCEEEEEEeCCCCCcHHH-HHHHHHHHHcCCCeEEEEeccccccC
Confidence 5 333222 1111 001778887776665 45566666678999999999998643
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.62 E-value=0.13 Score=50.82 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|.++||||||+..|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998
No 245
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=89.59 E-value=0.26 Score=56.63 Aligned_cols=114 Identities=17% Similarity=0.263 Sum_probs=62.4
Q ss_pred CeEEEEcCCCCchHHHHHHHh---CCCCcccc----CC------CccCcceeeh----hcccCCccccc----ccccCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALV---GRDFLPRG----ND------ICTRRPLVLQ----LLQTKTDEEYG----EFLHLPG 106 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~---G~~flPr~----~g------~~TR~Pl~l~----l~~~~~~~~~~----~f~~~pg 106 (767)
--|++||.-.+|||||.|+|. |. ..+- .| .+--.++|-. +.-..-.-.|. .+++.||
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~--i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGA--IQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTC--HHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCc--ccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 359999999999999999994 32 0110 00 0000111100 00000001343 3568887
Q ss_pred CcccChh-HHHHHHHHHHhhhhcCCccccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCCC
Q 004228 107 KRFYDFS-EIRREIQAQTDKEAGGNKVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 170 (767)
Q Consensus 107 ~~~~d~~-~i~~~i~~~t~~~~g~n~V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~ 170 (767)
+.||. ++.+.+...- |.=-|++|...+.-|. ..+.+.++..|...|.++||+|....
T Consensus 110 --HvDF~~Ev~raL~~~D----gAvlVvda~~GV~~qT-~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 --HQDFSEDTYRVLTAVD----SALVVIDAAKGVEAQT-RKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp --GGGCSHHHHHHHHSCS----EEEEEEETTTBSCHHH-HHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred --cHHHHHHHHHHHHhcC----ceEEEeecCCCccccc-HHHHHHHHHhCCceEEEEecccchhc
Confidence 56775 3443331110 1011777877775554 45566666689999999999998643
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.59 E-value=0.14 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||||+..|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999997
No 247
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.42 E-value=0.15 Score=52.49 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
-++++|..+|||||||..|+|.-. |.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~-p~ 53 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS-GK 53 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC-CE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC-CC
Confidence 478999999999999999999943 54
No 248
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.41 E-value=0.17 Score=49.32 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|.|+|+|.++||||||++.|.+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999876
No 249
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.37 E-value=0.18 Score=48.51 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||||++.|+|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999999997
No 250
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.33 E-value=0.15 Score=53.06 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999983
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.32 E-value=0.15 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHHhCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~ 70 (767)
|+++|..+||||||++.|.|.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999987
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.90 E-value=0.16 Score=50.78 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-+++||..+||||||++.|.|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999997
No 253
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.88 E-value=0.089 Score=56.10 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~f 72 (767)
.++++|.++|||||||++|.|...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHhccccc
Confidence 689999999999999999999853
No 254
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.69 E-value=0.17 Score=57.71 Aligned_cols=30 Identities=30% Similarity=0.539 Sum_probs=26.4
Q ss_pred EEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
|+|+|..+|||||+|++|+|. +|...|++|
T Consensus 263 i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 899999999999999999997 577777665
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.63 E-value=0.14 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.606 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
-.-|+|+|.++||||||.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999764
No 256
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=88.39 E-value=0.61 Score=49.24 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=32.5
Q ss_pred ccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEE
Q 004228 141 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 192 (767)
Q Consensus 141 ns~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V 192 (767)
.+++++.++.+.+.-.-+..|+||+|...++..+..+..--..|+ -|+++
T Consensus 225 g~~~~~~~~~~~~~~~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi--~~i~~ 274 (297)
T 1j8m_F 225 GQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATI--KFIGT 274 (297)
T ss_dssp GGGHHHHHHHHHHTCTTEEEEEECGGGCTTHHHHHHHHHTTTCCE--EEEEC
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeCCCCCcchHHHHHHHHHHCcCE--EEEeC
Confidence 367788888887643337779999998876665566554433443 35543
No 257
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.13 E-value=0.2 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.++++|..+|||||||..|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999987
No 258
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.04 E-value=0.18 Score=53.20 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999994
No 259
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.98 E-value=0.16 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+|||||||..|.|.-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999999983
No 260
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.88 E-value=0.26 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|+|.-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999985
No 261
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=87.65 E-value=0.21 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||||+..|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999996
No 262
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.40 E-value=1.2 Score=49.54 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHHh-------CCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALV-------GRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~-------G~~flPr~~g 78 (767)
.|+|+|.+++|||++...|. |.+.+....+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 68899999999999999998 7765544443
No 263
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.36 E-value=0.29 Score=46.10 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchHHHHHHHh
Q 004228 48 PQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~ 68 (767)
.-.+++|+.+||||++|+||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999996
No 264
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.22 E-value=0.15 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
+.|+|||.++||||+|++.|.|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999988
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.00 E-value=0.27 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+|||||+++.|.|.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999997
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.72 E-value=0.27 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||||+..|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 267
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.58 E-value=0.34 Score=50.34 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
-++++|..+|||||||..|+|.- |.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~ 56 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PY 56 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CC
Confidence 57899999999999999999993 64
No 268
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=86.57 E-value=0.28 Score=46.87 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
-++++|+.+||||+|+.+|+|.- |.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l--~~ 59 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI--GH 59 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT--TC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC--CC
Confidence 47899999999999999999983 64
No 269
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.26 E-value=0.28 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-..|+++|..+|||||||++|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999976
No 270
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=85.99 E-value=0.31 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999994
No 271
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=85.98 E-value=0.35 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999994
No 272
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=85.94 E-value=0.28 Score=49.09 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~ 80 (767)
-++++|..+||||+||..|+|. . |. +|.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~-p~-~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-A-LQ-SKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-H-HH-TTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC-C-Cc-CCee
Confidence 3789999999999999999998 3 54 4544
No 273
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.87 E-value=0.31 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-+++||..+|||||||..|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999999995
No 274
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.69 E-value=0.31 Score=50.41 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+|||||+|.+|.|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 4889999999999999999997
No 275
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.49 E-value=0.46 Score=48.01 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCchHHHHHHHh---CCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALV---GRDF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~---G~~f 72 (767)
..|+|+|..+|||||++..|+ |...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 479999999999999999999 9853
No 276
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.46 E-value=0.38 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 37899999999999999999984
No 277
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.45 E-value=0.38 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37899999999999999999994
No 278
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=85.41 E-value=0.49 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..+|||||||++|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 58999999999999999999 53
No 279
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.28 E-value=0.33 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.+++||..+||||||+..|.|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5889999999999999999987
No 280
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.28 E-value=0.43 Score=46.97 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
-++++|..+||||+|+..|+|.-..|.+.|
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 478999999999999999999533454444
No 281
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=85.27 E-value=0.35 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||||+..|.|.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999865
No 282
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.27 E-value=0.29 Score=49.00 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.0
Q ss_pred eEEEEcCCCCchHHHHHHHh-CC
Q 004228 49 QVAVVGSQSSGKSSVLEALV-GR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~-G~ 70 (767)
-|+++|..+||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48899999999999999999 87
No 283
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.26 E-value=0.37 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999995
No 284
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.23 E-value=0.43 Score=45.61 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchHHHHHHHh
Q 004228 49 QVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~ 68 (767)
-+++||..+||||+++..+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999865
No 285
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=85.13 E-value=0.89 Score=53.76 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=60.7
Q ss_pred CeEEEEcCCCCchHHHHHHHh---CCC-Ccccc-CCC--ccCccee-------------ehhcccCC--cccccccccCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALV---GRD-FLPRG-NDI--CTRRPLV-------------LQLLQTKT--DEEYGEFLHLP 105 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~---G~~-flPr~-~g~--~TR~Pl~-------------l~l~~~~~--~~~~~~f~~~p 105 (767)
--|+|||.--+|||||.|+|. |.- .+.+. .|. +--.+.| +.+..... .+..-.+++.|
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 359999999999999999995 330 00010 110 0001111 11110000 00112356888
Q ss_pred CCcccChh-HHHHHHHHHHhhhhcCCccccCCCcccccHHHHHHHHhCcCCCceEEEeeccCCCC
Q 004228 106 GKRFYDFS-EIRREIQAQTDKEAGGNKVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 169 (767)
Q Consensus 106 g~~~~d~~-~i~~~i~~~t~~~~g~n~V~~a~~D~ans~aL~la~~vDP~G~RTIGVlTK~Dl~d 169 (767)
| ..||. |+...+... | |.=-|++|...+.-|. ..+.+.+...|.+.|.||||+|...
T Consensus 94 G--HvDF~~Ev~~aLr~~-D---gavlvVDaveGV~~qT-~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 94 G--HVDFTIEVERSLRVL-D---GAVVVFCGTSGVEPQS-ETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp S--CTTCHHHHHHHHHHC-S---EEEEEEETTTCSCHHH-HHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred C--CcccHHHHHHHHHHh-C---eEEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEccccccC
Confidence 7 56775 454433211 1 1111677777765443 4556666667999999999999964
No 286
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.11 E-value=0.34 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCCC-eEEEEcCCCCchHHHHHHHhCC
Q 004228 45 IELP-QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 45 i~LP-qIvVvG~QSsGKSSvLEal~G~ 70 (767)
+.-+ -|+++|.++||||||+..|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 4445 4779999999999999999998
No 287
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=84.94 E-value=0.76 Score=52.08 Aligned_cols=50 Identities=26% Similarity=0.185 Sum_probs=35.3
Q ss_pred ccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEE
Q 004228 141 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 192 (767)
Q Consensus 141 ns~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V 192 (767)
.++++.+++.+...-.-|..|+||.|-..+|..+..++..-..|+ -|+++
T Consensus 424 Gq~al~~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI--~fig~ 473 (503)
T 2yhs_A 424 GQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPI--RYIGV 473 (503)
T ss_dssp THHHHHHHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCE--EEEEC
T ss_pred cHHHHHHHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCE--EEEec
Confidence 367888888887655678899999998777777777765322343 35555
No 288
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=84.90 E-value=0.38 Score=46.32 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHHhC
Q 004228 50 VAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G 69 (767)
|+++|..+||||||+..|.+
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 78999999999999999986
No 289
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.86 E-value=0.42 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999994
No 290
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.82 E-value=0.43 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+||||+||..|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999999994
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=84.55 E-value=0.41 Score=45.42 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||+|+..|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999754
No 292
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.36 E-value=0.36 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999994
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=83.99 E-value=0.62 Score=45.25 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.|.|+|+|.++||||+|++.|.+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999999999875
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=83.62 E-value=0.46 Score=46.43 Aligned_cols=22 Identities=36% Similarity=0.324 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||||...|.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999987
No 295
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.51 E-value=0.57 Score=43.80 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-|+++|..+||||||.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999743
No 296
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.50 E-value=0.47 Score=46.69 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.|+++|.++|||||+|..|.|. ++ .+|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~--~~-~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV--LK-SSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH--HH-HTT
T ss_pred EEEEECCCCChHHHHHHHHHhh--cc-cCC
Confidence 4789999999999999999997 45 555
No 297
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=83.44 E-value=0.3 Score=52.99 Aligned_cols=23 Identities=22% Similarity=0.624 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999984
No 298
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=83.33 E-value=0.44 Score=51.44 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++|||..+||||+|+..|.|.-
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999983
No 299
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.23 E-value=0.54 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHh
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~ 68 (767)
++-.-.+++|..+|||||+||||+
T Consensus 21 ~~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 21 FQSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHH
Confidence 344568899999999999999998
No 300
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.96 E-value=0.49 Score=47.88 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCCC-eEEEEcCCCCchHHHHHHHhCC
Q 004228 45 IELP-QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 45 i~LP-qIvVvG~QSsGKSSvLEal~G~ 70 (767)
+.-+ -|+++|..+||||||+..|.|.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4444 4789999999999999999885
No 301
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.87 E-value=0.53 Score=48.08 Aligned_cols=25 Identities=28% Similarity=0.524 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCchHHHHHHHh---CCCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALV---GRDF 72 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~---G~~f 72 (767)
..|+++|..+||||||+..|. |..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 479999999999999999999 9864
No 302
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=82.86 E-value=0.61 Score=46.14 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHHh
Q 004228 48 PQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~ 68 (767)
.-.+++|..++||||+|+||.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999985
No 303
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.61 E-value=0.75 Score=52.61 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=25.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
.++++|..+||||+||++|+|.. +-.+|.++
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i~ 344 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKIE 344 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCeEEE
Confidence 57899999999999999999984 44455443
No 304
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=82.18 E-value=0.53 Score=51.05 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+|||||+|.+|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999997
No 305
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=82.15 E-value=0.7 Score=52.90 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~ 80 (767)
-++++|..+||||+||++|+|.. +-.+|.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 325 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI--TADEGSV 325 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCSBCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 47899999999999999999984 4445543
No 306
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=81.87 E-value=0.57 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+|||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999987
No 307
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=81.60 E-value=0.54 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|.++||||||+..|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999996
No 308
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=81.59 E-value=0.69 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||..|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999983
No 309
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=81.50 E-value=0.55 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..+|||||||.+|+|..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999983
No 310
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=81.49 E-value=0.73 Score=49.55 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr 75 (767)
+|+++|+.++||||+|..+.+. |.|.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~-~~~~ 26 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN-MQPL 26 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC-CCSG
T ss_pred CEEEECCCCCCHHHHHHHHHcC-CCCC
Confidence 4899999999999999988876 4454
No 311
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=81.44 E-value=0.58 Score=50.15 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..+.|+++|..++||||++++|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999754
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=81.38 E-value=0.68 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|+++|..+||||||...|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=81.38 E-value=0.76 Score=44.90 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCCCCCCCC-eEEEEcCCCCchHHHHHHHhCC
Q 004228 40 GSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 40 G~~~~i~LP-qIvVvG~QSsGKSSvLEal~G~ 70 (767)
|+-..+.-+ -|+++|..+||||+|.+.|.+.
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 444455555 4779999999999999999986
No 314
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.27 E-value=0.86 Score=42.27 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCchHHHHHHH
Q 004228 48 PQVAVVGSQSSGKSSVLEAL 67 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal 67 (767)
+-|+++|..+|||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 315
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=81.24 E-value=1.1 Score=47.47 Aligned_cols=40 Identities=25% Similarity=0.029 Sum_probs=27.8
Q ss_pred cccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHc
Q 004228 140 ANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLL 179 (767)
Q Consensus 140 ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~ 179 (767)
+..|+...++.+......|+.|+||.|-..++..+..++.
T Consensus 231 sglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~ 270 (302)
T 3b9q_A 231 TGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVE 270 (302)
T ss_dssp GGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheehHH
Confidence 3355666666665444579999999998877777666654
No 316
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=81.10 E-value=0.92 Score=52.73 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=24.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~T 81 (767)
-++++|..+|||||||..|+|.- +-.+|.++
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I~ 414 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVE 414 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceEEE
Confidence 47899999999999999999984 44455443
No 317
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=81.04 E-value=0.63 Score=49.32 Aligned_cols=49 Identities=27% Similarity=0.231 Sum_probs=32.2
Q ss_pred cHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEE
Q 004228 142 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 192 (767)
Q Consensus 142 s~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V 192 (767)
++++..++.+......|+.|+||.|-..+|..+..+...-..| .-|+++
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~p--i~~ig~ 282 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVP--IKFVGV 282 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCC--EEEEEC
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCC--eEEEeC
Confidence 5667777776544456999999999887776666554332233 446665
No 318
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=81.04 E-value=0.87 Score=52.09 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+|||||||..|+|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999983
No 319
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=81.01 E-value=0.61 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+||||++++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 320
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=80.69 E-value=0.86 Score=44.41 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||||.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999873
No 321
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=80.61 E-value=0.79 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+||||||+..|.|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999983
No 322
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=80.60 E-value=0.76 Score=49.49 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..+.|+|+|..++||||++++|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999744
No 323
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=80.60 E-value=0.64 Score=45.18 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
.|+|+|..+||||+|.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999987
No 324
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=80.56 E-value=0.63 Score=52.24 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
=+.++|||..+|||||||..|+|.-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3789999999999999999999983
No 325
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=79.88 E-value=0.76 Score=44.72 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-|+++|..+||||||...|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999754
No 326
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=79.72 E-value=0.69 Score=53.32 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+||||||+..|.|.-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999999984
No 327
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=79.67 E-value=0.65 Score=53.68 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+||||||+..|.|.-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58899999999999999999984
No 328
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=79.43 E-value=0.74 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+|||||+|.+|.|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999997
No 329
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=79.42 E-value=0.83 Score=48.81 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCchHHHHHHHh
Q 004228 48 PQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~ 68 (767)
.-.++||+.+||||++||||+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999985
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=79.38 E-value=0.96 Score=43.47 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+|||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999764
No 331
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=79.15 E-value=1.1 Score=42.65 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 24 ~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
....+++.++..+..+.+.. -.-++++|..++|||+++.+|.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~---g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPEE---GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGGG---CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccC---CCEEEEECCCCCCHHHHHHHHHHH
Confidence 45567777777766443321 235899999999999999999987
No 332
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.15 E-value=0.59 Score=51.82 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+|||||+|.+|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999997
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=78.78 E-value=0.81 Score=48.94 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|.++|.++|||||++..|.|.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999886
No 334
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=78.75 E-value=0.74 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+|||||++..|.|.-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999999984
No 335
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=78.69 E-value=1.3 Score=50.58 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~ 80 (767)
-+++||..+||||+||..|+|.- +-.+|.+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~--~p~~G~i 56 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI--IPNFGDP 56 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCCTTCT
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCCCcc
Confidence 47899999999999999999983 3344543
No 336
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.68 E-value=1.3 Score=45.99 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=25.3
Q ss_pred HHHHhCCCCCCCCC-eEEEEcCCCCchHHHHHHHhCC
Q 004228 35 IFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 35 ~~~~~G~~~~i~LP-qIvVvG~QSsGKSSvLEal~G~ 70 (767)
+|+.+|+ .+| -|+++|..++|||+++.+|.|.
T Consensus 35 ~l~~~~l----~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 35 QFKALGL----VTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHTTC----CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHcCC----CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4555554 333 3999999999999999999986
No 337
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=78.57 E-value=1.1 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+|||||||..|+|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47899999999999999999983
No 338
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=78.50 E-value=0.76 Score=43.19 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-.-++++|..++|||+|+.+|.|.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999987
No 339
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=78.47 E-value=0.72 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+||||||+..|.|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999983
No 340
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=78.41 E-value=1.4 Score=51.29 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
-+++||..+|||||||..|+|.- +-.+|.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll--~P~~G~ 133 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ--KPNLGR 133 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCCTTT
T ss_pred EEEEECCCCChHHHHHHHHhcCC--CCCCce
Confidence 58999999999999999999984 444453
No 341
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=78.29 E-value=1.1 Score=42.56 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+|+|..+|||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 342
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=78.11 E-value=0.66 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+|||||++..|.|.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58899999999999999999984
No 343
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=78.09 E-value=1.5 Score=47.63 Aligned_cols=40 Identities=25% Similarity=0.029 Sum_probs=28.3
Q ss_pred cccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHc
Q 004228 140 ANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLL 179 (767)
Q Consensus 140 ans~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~ 179 (767)
+.+|+...++.+.....-|+.|+||.|-..+|-.+..++.
T Consensus 288 tglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~ 327 (359)
T 2og2_A 288 TGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVE 327 (359)
T ss_dssp GGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHH
Confidence 3456666666665444579999999998888877766654
No 344
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=78.02 E-value=1.1 Score=42.01 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|..+|||||+...|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999975
No 345
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=77.94 E-value=0.92 Score=45.13 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-++++|..+||||+|+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999994
No 346
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.90 E-value=1.2 Score=42.16 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|-.+||||||...|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999764
No 347
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=77.88 E-value=0.94 Score=44.11 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-|+++|..+||||||...|.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999843
No 348
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.85 E-value=0.9 Score=48.69 Aligned_cols=39 Identities=23% Similarity=0.108 Sum_probs=30.4
Q ss_pred ccHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHc
Q 004228 141 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLL 179 (767)
Q Consensus 141 ns~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~ 179 (767)
.++++..++.+...-.-|+.|+||.|-..++..+..++.
T Consensus 254 ~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~ 292 (328)
T 3e70_C 254 GNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISY 292 (328)
T ss_dssp TTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHH
Confidence 468888898887666788999999998767666666554
No 349
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=77.85 E-value=0.89 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-.+++|..++|||++||+|.+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 35789999999999999999865
No 350
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=77.85 E-value=0.93 Score=48.01 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-.+++|..+||||+||+||...
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHHT
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999854
No 351
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=77.71 E-value=1 Score=48.81 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchHHHHHHHh
Q 004228 48 PQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~ 68 (767)
.-.|++|..+||||++||||.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999986
No 352
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=77.62 E-value=1.9 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-|+|+|.++||||||.+.|.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999887
No 353
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=77.54 E-value=0.91 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..++|||++|+||.+.-
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 57999999999999999999874
No 354
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=77.34 E-value=0.75 Score=48.77 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+|-++|+|..+|||||+|+.|.|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36889999999999999999999873
No 355
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=77.34 E-value=1.1 Score=42.47 Aligned_cols=22 Identities=32% Similarity=0.287 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+|||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 356
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.58 E-value=1.6 Score=44.00 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..++|||+++.+|.|.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999986
No 357
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.48 E-value=1.2 Score=42.29 Aligned_cols=27 Identities=26% Similarity=0.569 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHh---CCCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALV---GRDF 72 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~---G~~f 72 (767)
..+-|+++|..+||||++...|. |..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 34569999999999999999998 5544
No 358
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=76.22 E-value=0.71 Score=45.01 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+|||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999865
No 359
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.79 E-value=1.4 Score=42.48 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+|||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999999865
No 360
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=75.76 E-value=0.46 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.305 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
-.+++||..+||||+||++|.+.
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999887
No 361
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=75.49 E-value=1.2 Score=42.33 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+|||||+...|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999875
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=75.45 E-value=1.4 Score=42.07 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|..+|||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 363
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=75.39 E-value=1.6 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEcCCCCchHHHHHHHhCCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~ 71 (767)
++++|..+||||+||..|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999999994
No 364
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=75.09 E-value=1.5 Score=42.36 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+|||||+.+.|...
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 365
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=74.38 E-value=1.6 Score=41.69 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHHhCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~ 70 (767)
|++.|..+|||||+.+.|...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999754
No 366
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=73.80 E-value=1.7 Score=41.26 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHHh
Q 004228 49 QVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~ 68 (767)
-|+++|..+|||||+...|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999997
No 367
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=73.65 E-value=1.9 Score=40.91 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHh
Q 004228 47 LPQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~ 68 (767)
.+-|+++|..+||||+|-..|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999996
No 368
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=73.61 E-value=0.34 Score=49.27 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=19.7
Q ss_pred EEEEcCCCCchHHHHHHHhCCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~~ 71 (767)
++|+|..+|||||+|.+|+|.-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 3678999999999999999984
No 369
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=73.38 E-value=2.2 Score=43.83 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..++|||+|+.+|.|.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999986
No 370
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=73.29 E-value=2 Score=41.24 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
+.|+++|..+||||+|.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998643
No 371
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=73.15 E-value=1.8 Score=40.86 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
+.|+++|..+||||+|.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999643
No 372
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=73.05 E-value=1.7 Score=42.21 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|..+|||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 373
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=72.98 E-value=1.5 Score=42.81 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-++++|..++|||+++..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999976
No 374
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=72.61 E-value=1.9 Score=41.22 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||++...|.+.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 375
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=72.04 E-value=1.8 Score=41.91 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+|+|..+|||||+.+.|..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 376
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=71.64 E-value=2.1 Score=40.70 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|..+||||++.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999964
No 377
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=71.39 E-value=2.2 Score=41.66 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
.|+|+|..+||||++.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999853
No 378
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=71.06 E-value=2.1 Score=42.01 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|..+||||++.+.|.+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 379
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=71.03 E-value=2.1 Score=40.65 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHHh
Q 004228 48 PQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~ 68 (767)
|.|+++|..+||||++-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999988885
No 380
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=70.95 E-value=2.2 Score=39.86 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
+-|+++|..+||||++...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999998863
No 381
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=70.69 E-value=1.2 Score=54.44 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=24.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~ 79 (767)
.++++|..+|||||||+.|+|.- +-.+|.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll--~P~sG~ 729 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL--LPTSGE 729 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS--CCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCceE
Confidence 58999999999999999999984 333453
No 382
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=70.56 E-value=2.3 Score=40.54 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
+-|+++|..+|||||+...|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 383
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=70.35 E-value=2.3 Score=39.56 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
.|+++|..+||||++...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999854
No 384
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=70.13 E-value=1.7 Score=44.94 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-++|+|..++|||+++..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988
No 385
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=70.08 E-value=2.5 Score=41.39 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
.|+++|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999953
No 386
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=69.48 E-value=2.5 Score=40.13 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|..+||||++.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 387
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=69.35 E-value=2.3 Score=41.00 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
|-|++.|..+||||+|.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 388
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=69.33 E-value=3.2 Score=46.46 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCchHHHHHHHh
Q 004228 48 PQVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~ 68 (767)
--|+|||.+++|||.|||.|.
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 356789999999999999775
No 389
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=69.14 E-value=4.9 Score=38.24 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 27 ~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..++.|.+.+..- ..|-+++.|..++|||+++++|...
T Consensus 24 ~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 24 EVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3566666655421 3445999999999999999999754
No 390
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=68.91 E-value=2.4 Score=40.72 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-|+++|..+||||+|.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35899999999999999999854
No 391
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=68.75 E-value=2.1 Score=43.97 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHhC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G 69 (767)
-..|+++|..+||||||...|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999965
No 392
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=68.55 E-value=2.5 Score=40.04 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|..+||||++...|..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 393
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=68.44 E-value=3.3 Score=41.54 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=26.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHh-----CCCCcccc
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALV-----GRDFLPRG 76 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~-----G~~flPr~ 76 (767)
...+-++++|..+|||||++++|. |.+.+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 456789999999999999999998 76554443
No 394
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=68.38 E-value=2.5 Score=40.45 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
.-|+++|..+|||||+...|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 395
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=68.05 E-value=2.1 Score=40.42 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=14.7
Q ss_pred eEEEEcCCCCchHHHHHHHh
Q 004228 49 QVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~ 68 (767)
-|+++|..+|||||+.+.|.
T Consensus 7 ~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp EEEEECCC----CHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999996
No 396
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=67.95 E-value=2.3 Score=41.74 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+|||||+...|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 397
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=67.61 E-value=2.8 Score=40.47 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
.-|+|+|..+||||++.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999873
No 398
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=66.97 E-value=2.7 Score=41.66 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
..|+++|..+|||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999973
No 399
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=66.95 E-value=2.7 Score=43.82 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCC-eEEEEcCCCCchHHHHHHHhCC
Q 004228 24 SVIPLVNKLQDIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 24 ~~i~lin~L~d~~~~~G~~~~i~LP-qIvVvG~QSsGKSSvLEal~G~ 70 (767)
++..+++++-.- .++-.....-| -|+++|.++|||||+...|...
T Consensus 11 ~~~~~~~~~~~~--~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 11 QFENRLNDNLEE--LIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHHH--HHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444555555432 23322223334 4788999999999999999753
No 400
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=66.64 E-value=3 Score=40.33 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|..+||||++...|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 401
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=66.61 E-value=2.8 Score=41.32 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
.-|+|+|..+|||||+...|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999964
No 402
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=66.27 E-value=2.4 Score=46.25 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..++|||||+.+|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999974
No 403
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=66.24 E-value=3.2 Score=38.62 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-|+++|..++|||+++.+|...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999765
No 404
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=65.73 E-value=4.4 Score=42.89 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.|-++|+|..++|||+++.++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999876
No 405
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=65.69 E-value=2.3 Score=53.78 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.+++||..+||||||+..|.|.- +..+|
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~--~~~~G 445 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY--DPLDG 445 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS--CCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCe
Confidence 58999999999999999999983 44444
No 406
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=65.65 E-value=2.6 Score=41.56 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-++++|..++|||+++..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999984
No 407
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=65.60 E-value=2.3 Score=53.92 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g 78 (767)
.+++||..+||||||+..|.|. .+..+|
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~--~~~~~G 473 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY--YDVLKG 473 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS--SCCSEE
T ss_pred EEEEEecCCCcHHHHHHHhccc--cccccC
Confidence 5899999999999999999998 344444
No 408
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=65.22 E-value=3.2 Score=42.34 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
+-|+++|-.+||||++...|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 409
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=65.17 E-value=2.8 Score=53.10 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.|++||+.+||||||+..|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999987
No 410
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=65.16 E-value=2.8 Score=40.70 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-++++|..++|||+++..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=64.90 E-value=3 Score=42.47 Aligned_cols=20 Identities=50% Similarity=0.567 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchHHHHHHHh
Q 004228 49 QVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~ 68 (767)
.|+++|..+||||+|.+.|.
T Consensus 11 ~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999998
No 412
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=64.89 E-value=1.7 Score=43.65 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCccccCCCccCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~~g~~TR~P 84 (767)
-|+|.|..+|||||+++.|... |.. .+.+||.|
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~--l~~-~~~~~~ep 39 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKK--LQP-NCKLLKFP 39 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH--HCS-SEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hcc-cceEEEec
Confidence 5899999999999999999865 333 34567766
No 413
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=64.83 E-value=3.4 Score=40.50 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
.|+|+|..+||||++.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 414
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=63.68 E-value=6 Score=41.98 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=30.5
Q ss_pred cHHHHHHHHhCcCCCceEEEeeccCCCCCcccHHHHHcCCCCCcccceEEE
Q 004228 142 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 192 (767)
Q Consensus 142 s~aL~la~~vDP~G~RTIGVlTK~Dl~d~gtd~~~iL~g~~~~LklGy~~V 192 (767)
+++++.++.+.+...-+=.|+||.|-..+|..+.+++.--..|+ -|+++
T Consensus 241 ~~~l~~~~~~~~~~~i~GvVltk~d~~~~~g~~~~~~~~~~~Pi--~~i~~ 289 (320)
T 1zu4_A 241 QNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPI--KMIGV 289 (320)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEECGGGCSCTTHHHHHHHHHCCCE--EEEEC
T ss_pred HHHHHHHHHHhhcCCCcEEEEeCCCCCCchhHHHHHHHHHCcCE--EEEeC
Confidence 67778888887654444467899987766655555554323443 35555
No 415
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=63.60 E-value=1.5 Score=43.83 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
=|+|.|..+|||||+++.|...
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 416
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.49 E-value=3 Score=43.95 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.+|.+.++|..++|||+++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5667999999999999999999983
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=63.05 E-value=3.8 Score=40.65 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 418
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=62.62 E-value=3.9 Score=41.08 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|++.|..+|||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 419
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=62.60 E-value=3.3 Score=41.40 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
..|+++|..+||||++.+.|.+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 420
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=62.40 E-value=3.5 Score=43.66 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.+.-++++|..++|||+|+.+|.|.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999886
No 421
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=62.34 E-value=3.1 Score=46.29 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|..++|||+||..|+|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999999984
No 422
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=62.30 E-value=4 Score=40.09 Aligned_cols=22 Identities=18% Similarity=0.361 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
..|+++|..+||||++...|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 423
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=62.28 E-value=3.3 Score=42.20 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+||||+|-..|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4899999999999999998643
No 424
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=62.21 E-value=26 Score=36.87 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCCe-EEEEcCCCCchHHHHHHHhCCCC--ccccCCCccCcce
Q 004228 46 ELPQ-VAVVGSQSSGKSSVLEALVGRDF--LPRGNDICTRRPL 85 (767)
Q Consensus 46 ~LPq-IvVvG~QSsGKSSvLEal~G~~f--lPr~~g~~TR~Pl 85 (767)
.+|. +.+.|..++||+++..++...-. -+.+...|..|+.
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 64 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG 64 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHH
Confidence 4565 99999999999999998865311 1233456777765
No 425
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=61.82 E-value=3.1 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|||.+++|||+++..|.+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999877
No 426
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=61.73 E-value=11 Score=38.94 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 28 lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.+++|.+.+.. | +-++|.|..++|||||+..+...
T Consensus 20 el~~L~~~l~~-~-------~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 20 ESRKLEESLEN-Y-------PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHH-C-------SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-------CeEEEECCCcCCHHHHHHHHHHH
Confidence 45556555443 2 68999999999999999998754
No 427
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=61.61 E-value=3.1 Score=42.22 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCCCC-eEEEEcCCCCchHHHHHHHhCC
Q 004228 44 TIELP-QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 44 ~i~LP-qIvVvG~QSsGKSSvLEal~G~ 70 (767)
...-| -|+++|.++||||++...|.+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34445 5889999999999999999765
No 428
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=61.46 E-value=3.3 Score=44.54 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.++++|+.++|||+||..|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999984
No 429
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=61.21 E-value=7.9 Score=38.85 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=31.1
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCC---eEEEEcCCCCchHHHHHHHhCC
Q 004228 23 GSVIPLVNKLQDIFAQLGSQSTIELP---QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 23 ~~~i~lin~L~d~~~~~G~~~~i~LP---qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-+.+.++..|...+. .+| -|++.|..++|||++.-+|...
T Consensus 39 ~~~~~f~~~l~~~~~--------~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 39 IEFITFLGALKSFLK--------GTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CCHHHHHHHHHHHHH--------TCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh--------cCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 356777888887765 267 7999999999999887777643
No 430
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=60.59 E-value=4.7 Score=37.65 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G 69 (767)
..--|+++|..+||||++-..|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999853
No 431
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=60.50 E-value=4.4 Score=40.89 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
.-|+|.|..+||||+|-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 432
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=60.47 E-value=2.6 Score=48.43 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..+||||||+.+|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 4789999999999999999998
No 433
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=59.79 E-value=12 Score=35.85 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCC-eEEEEcCCCCchHHHHHHHhCC
Q 004228 28 LVNKLQDIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 28 lin~L~d~~~~~G~~~~i~LP-qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.++.|...+.. | ..| -++|.|..++|||+++.++...
T Consensus 31 ~~~~l~~~l~~-~-----~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 31 VLTALANGLSL-G-----RIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHHHH-T-----CCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-C-----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566655542 2 223 5899999999999999999754
No 434
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=59.46 E-value=4.3 Score=42.01 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHHh
Q 004228 49 QVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~ 68 (767)
-|+|+|..+|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999997
No 435
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=59.10 E-value=4.7 Score=41.50 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|..+|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 436
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=58.87 E-value=9.7 Score=39.06 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=25.4
Q ss_pred HhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 38 QLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 38 ~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|+...-...-|+++|..++|||++..+|...
T Consensus 58 ~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 58 KLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456554444456999999999999999988755
No 437
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=58.81 E-value=3.8 Score=42.00 Aligned_cols=22 Identities=27% Similarity=0.281 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-++++|..++|||+|+..|++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 438
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=58.74 E-value=4.9 Score=40.50 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
.|+++|..+|||||+...|..
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999963
No 439
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=58.56 E-value=3.8 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
.+++||..+||||||+..|.|.-
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999984
No 440
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=58.50 E-value=5.1 Score=39.89 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|+++|..+||||++.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999643
No 441
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=58.40 E-value=4.8 Score=39.60 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHHhC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G 69 (767)
..|+|+|..+||||++.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
No 442
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=57.99 E-value=5.4 Score=39.07 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G 69 (767)
.-.-|+++|..+||||+|-+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998863
No 443
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.27 E-value=4.8 Score=42.47 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 27 ~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.+++.|...+. -| .+|.+.++|+.++|||+++.+|.+.
T Consensus 32 ~~~~~L~~~i~-~g-----~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 32 EVITTVRKFVD-EG-----KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHH-TT-----CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 35566655433 11 4567999999999999999999886
No 444
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=56.63 E-value=4.7 Score=40.53 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+++|..++|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999875
No 445
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=56.61 E-value=4.6 Score=37.54 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
-+-|+++|..++|||+++.+|...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
No 446
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=55.82 E-value=4.5 Score=49.48 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
.++++|..+|||||||..|.|
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999994
No 447
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=55.44 E-value=6.9 Score=38.05 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 26 IPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 26 i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
-.+++.|..... .+ .-+-|+++|..++|||+++.+|...
T Consensus 37 ~~~~~~l~~~~~-~~-----~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 37 DELIGALKSAAS-GD-----GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHH-TC-----SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CC-----CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345666665443 11 3467999999999999999999764
No 448
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=55.12 E-value=4.2 Score=47.52 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchHHHHHHHh
Q 004228 49 QVAVVGSQSSGKSSVLEALV 68 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~ 68 (767)
-+++||..+|||||||+.|.
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 47899999999999998764
No 449
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=54.47 E-value=2.6 Score=47.73 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-.|++|..+||||+||+||...
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999655
No 450
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=54.39 E-value=7.4 Score=41.52 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
|-|+|+|..+||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999999999754
No 451
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=54.17 E-value=13 Score=40.18 Aligned_cols=25 Identities=40% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|.|+++|..++|||++..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999875
No 452
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=54.17 E-value=9.6 Score=38.66 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=24.3
Q ss_pred HHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 36 FAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 36 ~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
+..+|+. .-.-|.+.|..++|||++..+|.+.
T Consensus 43 ~~~~~~~---~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 43 FEKVGIE---PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp HHHHCCC---CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhcCCC---CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3445543 2345999999999999999999765
No 453
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=54.09 E-value=4.5 Score=42.23 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=17.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
+-|+|.|.++||||||-..|...
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998653
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=52.75 E-value=5.3 Score=40.55 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-|+|.|.-+|||||+.+.|...
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999754
No 455
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=52.66 E-value=9.4 Score=43.45 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 43 STIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 43 ~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..+.-+-++++|..++|||+++.+|.+.
T Consensus 104 ~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 104 KSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp SSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456778999999999999999999876
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=52.50 E-value=6.7 Score=39.12 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|++.|.-+||||++.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999755
No 457
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=51.95 E-value=4.9 Score=39.77 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=18.7
Q ss_pred EEEEcCCCCchHHHHHHHhCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~ 70 (767)
||+=|--+|||||+++.|...
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 788899999999999998754
No 458
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=51.94 E-value=12 Score=38.59 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
+-++|.|..++|||+|+..+...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999998754
No 459
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=51.71 E-value=7.8 Score=37.19 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 25 VIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 25 ~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
...+++.+...+...+-. ..-.-|++.|..++|||+++.+|...
T Consensus 34 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344666676665543211 12257899999999999999999865
No 460
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=51.08 E-value=11 Score=40.42 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCC---C-------ccccCCCccCcceee
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRD---F-------LPRGNDICTRRPLVL 87 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~---f-------lPr~~g~~TR~Pl~l 87 (767)
+-|||+|..+||||+|-..|...- | +-++=.+.|+.|..-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~e 90 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVP 90 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHH
Confidence 469999999999999999998761 0 113335677776543
No 461
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=50.82 E-value=7.4 Score=42.69 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|-.+|||||+...|..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488899999999999999964
No 462
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=50.76 E-value=18 Score=35.81 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
+-|.+.|..++|||++..+|...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999754
No 463
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=50.20 E-value=6.7 Score=41.00 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|.+++|||+++-.|.|.
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999987
No 464
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=50.01 E-value=7.7 Score=43.16 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.|++||-.+||||++...|...
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 465
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=49.96 E-value=7.6 Score=44.10 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G 69 (767)
..|.+.|+|..+||||++|++|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999999875
No 466
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=49.79 E-value=8.6 Score=37.41 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-|+++|..+||||++...|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 467
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=49.20 E-value=8.9 Score=38.11 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|++.|..+|||||+++.|...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998654
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=48.38 E-value=9.9 Score=37.96 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-|+++|..++|||+|.-.|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999866
No 469
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=48.34 E-value=8.9 Score=41.21 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+||||+|-..|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 6899999999999999988754
No 470
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=47.12 E-value=7.5 Score=40.80 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHhCC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
-.-++|+|..++|||+++.++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999875
No 471
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=46.54 E-value=9.6 Score=38.66 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=25.4
Q ss_pred eEEEEcCCCCchHHHHHHHhCCCCcccc-C-CCccCcc
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG-N-DICTRRP 84 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~flPr~-~-g~~TR~P 84 (767)
-|+|.|..+|||||+++.|... +-..+ + ..+||.|
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~-l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVET-LQQNGIDHITRTREP 65 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHH-HHHTTCCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHhcCCCeeeeecCC
Confidence 5899999999999999999765 21222 1 3456665
No 472
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=46.50 E-value=10 Score=38.11 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|.|-.+||||++.+.|...
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999765
No 473
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=46.39 E-value=10 Score=37.07 Aligned_cols=20 Identities=50% Similarity=0.707 Sum_probs=18.4
Q ss_pred EEEEcCCCCchHHHHHHHhC
Q 004228 50 VAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G 69 (767)
|.|+|...||||++-|.|..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78999999999999999973
No 474
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=46.33 E-value=28 Score=31.63 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.4
Q ss_pred EEEEcCCCCchHHHHHHHhCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~ 70 (767)
|.+.|..++|||++..+|...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999765
No 475
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=46.19 E-value=9.8 Score=37.36 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchHHHHHHHhC
Q 004228 49 QVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G 69 (767)
-++|+|+.++|||+++..|+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999776653
No 476
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=46.15 E-value=8.7 Score=38.72 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=16.8
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|||.|..+|||||+++.|...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999754
No 477
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=45.71 E-value=19 Score=40.73 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=21.8
Q ss_pred CCC-eEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELP-QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LP-qIvVvG~QSsGKSSvLEal~G~ 70 (767)
.+| -|.++|..++|||+|+.+|.|.
T Consensus 62 ~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 62 RIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 444 4999999999999999999986
No 478
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=44.73 E-value=9 Score=44.68 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=14.9
Q ss_pred eEEEEcCCCCchHHHH
Q 004228 49 QVAVVGSQSSGKSSVL 64 (767)
Q Consensus 49 qIvVvG~QSsGKSSvL 64 (767)
.+++||..+|||||||
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 4899999999999997
No 479
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=44.66 E-value=18 Score=37.32 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=21.4
Q ss_pred CCCCCeEE-EEcCCCCchHHHHHHHhCC
Q 004228 44 TIELPQVA-VVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 44 ~i~LPqIv-VvG~QSsGKSSvLEal~G~ 70 (767)
.+..|..+ +.|..++|||++.++|...
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45667655 4599999999999999743
No 480
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=44.54 E-value=20 Score=40.15 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|.++|..++|||+++.+|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 481
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=44.20 E-value=11 Score=40.55 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 45 i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..-+-++|+|..+||||+++..|.+.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999876
No 482
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=43.78 E-value=18 Score=36.31 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.3
Q ss_pred EEEEcCCCCchHHHHHHHhCC
Q 004228 50 VAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 50 IvVvG~QSsGKSSvLEal~G~ 70 (767)
|.+.|..++|||++..+|.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999864
No 483
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=43.42 E-value=9.2 Score=45.58 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCchHHHHHHHhCCCCcc
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~~flP 74 (767)
--++++|..++|||++|..|.|.-.+|
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~~~~ 603 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIALLA 603 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhhhhc
Confidence 368899999999999999999985333
No 484
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=43.18 E-value=10 Score=38.81 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCchHHHHHHHhCC
Q 004228 48 PQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 48 PqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.-|.+.|..++|||++..+|.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 485
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=42.95 E-value=9.5 Score=40.84 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-+.++|..+||||+|+..|++.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999874
No 486
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=42.92 E-value=28 Score=35.57 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 28 lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.++.|...+.. | .+|.+++.|..++|||++..+|...
T Consensus 33 ~~~~l~~~l~~-~-----~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 33 IVKRLKHYVKT-G-----SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHHHH-T-----CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-C-----CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 56666665542 2 4567999999999999999999754
No 487
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.49 E-value=26 Score=35.65 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 28 lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.++.|...+.. -.+|.+++.|..++|||+++.++...
T Consensus 29 ~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 29 TIDRLQQIAKD------GNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHHHHHS------CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45666655431 14566999999999999999999754
No 488
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=42.38 E-value=9.9 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++++|..++|||++|..|.|+.
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58999999999999999999974
No 489
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=42.12 E-value=13 Score=45.18 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHH--------hCCCCcccc
Q 004228 49 QVAVVGSQSSGKSSVLEAL--------VGRDFLPRG 76 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal--------~G~~flPr~ 76 (767)
-++++|..++|||++|..| .|. |+|-.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~~~aq~G~-~vpa~ 698 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIVLMAQIGC-FVPCE 698 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHTC-CBSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhcCC-ccccc
Confidence 4889999999999999999 776 45554
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=42.05 E-value=9.7 Score=43.01 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchHHHHHH--HhCCCCccccCC
Q 004228 49 QVAVVGSQSSGKSSVLEA--LVGRDFLPRGND 78 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEa--l~G~~flPr~~g 78 (767)
-++|+|..+||||+|+.. +.|.. +.++|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~--~~~~g 70 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGII--EFDEP 70 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--HHCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--hCCCC
Confidence 478999999999999999 67873 43444
No 491
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=41.78 E-value=11 Score=39.30 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=30.8
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 22 ~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
++.-...+..+..+...-| -..+-+++.|..++|||+++.+|.+.
T Consensus 16 g~~~~~a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 16 GEGNRLAYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CTTTHHHHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4444445666666543221 13456999999999999999999865
No 492
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=41.54 E-value=2.4e+02 Score=32.30 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHcc
Q 004228 618 KAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEP------EEVAMKRKRTRDTLRVLQQAFRTLDE 679 (767)
Q Consensus 618 KaImhfLVn~~k~~Lq~eLi~~LY~~~~~~eLL~E~------~~ia~kR~~l~~~l~~L~qA~~iL~e 679 (767)
+.+..-|++.+=..++..|+... ++.+..+||++= ....++.....++-+.|++-++.|.+
T Consensus 532 ~iv~~~~~D~vP~~I~~~lv~~~-~~~lq~~l~~~l~~~~~~~~ll~E~~~~~~~R~~l~~~~~~L~~ 598 (608)
T 3szr_A 532 QEASKRISSHIPLIIQFFMLQTY-GQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLTQ 598 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHTTTTCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555544 233444444332 34445666777777788887777765
No 493
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=41.33 E-value=26 Score=38.90 Aligned_cols=37 Identities=14% Similarity=0.374 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 28 lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
.+.+|.+++.. -..+-++++|..++|||++.++|...
T Consensus 188 ~i~~l~~~l~r------~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 188 EIQRVIEVLSR------RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHHHC------SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhc------cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 45555555442 23457899999999999999999865
No 494
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.06 E-value=13 Score=38.84 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 46 ~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|.+.+.|..++|||+++.+|.+.
T Consensus 57 ~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 57 NLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3466999999999999999999876
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=40.65 E-value=10 Score=42.74 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchHHHHHHHhCCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGRD 71 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~~ 71 (767)
-++|+|..++|||+|+..|+|.-
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999983
No 496
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=40.37 E-value=12 Score=39.88 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-++++|++++|||++..+|.++
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHhc
Confidence 5999999999999999999865
No 497
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=39.92 E-value=14 Score=39.28 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|..+||||+|-..|...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 498
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=39.55 E-value=14 Score=42.45 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHhC
Q 004228 47 LPQVAVVGSQSSGKSSVLEALVG 69 (767)
Q Consensus 47 LPqIvVvG~QSsGKSSvLEal~G 69 (767)
.|.+.|+|..+||||.+|++|.-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHH
Confidence 59999999999999999999764
No 499
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=39.40 E-value=30 Score=38.17 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=32.8
Q ss_pred CCCCCchHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCCchHHHHHHHhCC
Q 004228 19 VPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 19 ~~~~~~~i~lin~L~d~~~~~G~~~~i~LPqIvVvG~QSsGKSSvLEal~G~ 70 (767)
..|.+....+++.+.+.+.. . -+-++|.|..++|||+|+.++...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~---~----~~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKE---K----KHHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHS---S----SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc---C----CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 34667778888877654331 1 137899999999999999988744
No 500
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=39.00 E-value=13 Score=41.28 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHHhCC
Q 004228 49 QVAVVGSQSSGKSSVLEALVGR 70 (767)
Q Consensus 49 qIvVvG~QSsGKSSvLEal~G~ 70 (767)
-|+|+|.+++|||+++..|.+.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999876
Done!