BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004229
(766 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 10/90 (11%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPG-------RS---FM 712
W +TPE+H+F ADLPGV+KEE+KVEVED L++ E E RS F+
Sbjct: 6 WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 65
Query: 713 RKFRLPGMINIDEISAGYEDGVLTVMAPRS 742
R+FRL ++E+ AG E+GVLTV P++
Sbjct: 66 RRFRLLEDAKVEEVKAGLENGVLTVTVPKA 95
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 10/89 (11%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPG-------RS---FM 712
W +TPE+H+F ADLPGV+KEE+KVEVED L++ E E RS F+
Sbjct: 5 WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 64
Query: 713 RKFRLPGMINIDEISAGYEDGVLTVMAPR 741
R+FRL ++E+ AG E+GVLTV P+
Sbjct: 65 RRFRLLEDAKVEEVKAGLENGVLTVTVPK 93
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 10/94 (10%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPG-------RS---FM 712
W +TPE+H+F ADLPGV+KEE+KVEVED L++ E E RS F+
Sbjct: 48 WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 107
Query: 713 RKFRLPGMINIDEISAGYEDGVLTVMAPRSITRR 746
R+FRL ++E+ AG E+GVLTV P++ ++
Sbjct: 108 RRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKK 141
>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|B Chain B, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|C Chain C, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|D Chain D, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|E Chain E, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|F Chain F, Small Heat Shock Protein Hsp14.0 Of Wild Type
Length = 123
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 671 IFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRK--------FRLPGMIN 722
+ ADL G KE+IK V LII EA E T PG ++ + RLP +
Sbjct: 37 VVVADLAGFNKEKIKARVSGQNELII--EAEREITEPGVKYLTQRPKYVRKVIRLPYNVA 94
Query: 723 ID-EISAGYEDGVLTVMAP 740
D EIS YE+GVLT+ P
Sbjct: 95 KDAEISGKYENGVLTIRIP 113
>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAB|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAC|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
pdb|3AAC|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
Length = 123
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 671 IFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRK--------FRLPGMIN 722
+ ADL G KE+IK V LII EA E T PG ++ + RLP +
Sbjct: 37 VVVADLAGFNKEKIKARVSGQNELII--EAEREITEPGVKYLTQRPKYVRKVIRLPYNVA 94
Query: 723 ID-EISAGYEDGVLTVMAP 740
D EIS YE+GVLT+ P
Sbjct: 95 KDAEISGKYENGVLTIRIP 113
>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQL|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQM|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|C Chain C, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|D Chain D, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|E Chain E, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|F Chain F, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|G Chain G, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|H Chain H, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|I Chain I, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|J Chain J, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|K Chain K, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|L Chain L, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|M Chain M, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|N Chain N, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
Length = 115
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 671 IFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRK--------FRLPGMIN 722
+ ADL G KE+IK V LII EA E T PG ++ + RLP +
Sbjct: 37 VVVADLAGFNKEKIKARVSGQNELII--EAEREITEPGVKYLTQRPKYVRKVIRLPYNVA 94
Query: 723 ID-EISAGYEDGVLTVMAP 740
D EIS YE+GVLT+ P
Sbjct: 95 KDAEISGKYENGVLTIRIP 113
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Query: 216 FIETVDVQWPPEMAKGNDLVAVTVSHPPGQVYDERASSTSHSTPTKYAEPTKEETFADVR 275
F+E + V+ +GN L AVT P ++ S P Y V
Sbjct: 36 FMEPLKVEKFATANRGNGLRAVTPLRPGELLF--------RSDPLAYT----------VC 77
Query: 276 MNSNGGLRQCATCEKEVHGDQSVC-CGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMME 334
S G C++ + G + + C +CR YCS+ CQK+ W D HK EC K+
Sbjct: 78 KGSRG-----VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPD-HKRECKCLKSCKP 131
Query: 335 R 335
R
Sbjct: 132 R 132
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 676 LPGVRKEEI---------KVEVEDSKYLIIRTEAVDESTIPGRS-FMRKFRLPGMINIDE 725
LPGV KE+I ++ + S +I +E + S IP R +LP + +
Sbjct: 60 LPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEEN 119
Query: 726 ISAGYEDGVLTVMAPR--SITRRGLLID 751
SA +E+GVL+V+ P+ S ++G+ I+
Sbjct: 120 ASAKFENGVLSVILPKAESSIKKGINIE 147
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 276 MNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECG 327
M++ + C C +E + C C V YCS+ CQ++ WKD H+ CG
Sbjct: 3 MDAERKEQSCVNCGREAMSE----CTGCHKVNYCSTFCQRKDWKD-HQHICG 49
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And Bs69
Mynd Domains
Length = 47
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 280 GGLRQ-CATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECG 327
G + Q C C +E + C C V YCS+ CQ++ WKD H+ CG
Sbjct: 1 GAMEQSCVNCGREAMSE----CTGCHKVNYCSTFCQRKDWKD-HQHICG 44
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 671 IFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGR----------SFMRKFRLPGM 720
+ ADLPG+ +I+V++ D L IR E ES+ SF R+F LP
Sbjct: 17 VLYADLPGIDPSQIEVQM-DKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDS 75
Query: 721 INIDEISAGYEDGVLTVMAPR 741
+ D I+A +GVL + P+
Sbjct: 76 ADADGITAAGRNGVLEIRIPK 96
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 286 ATCEKEVHGDQSVC-CGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMER 335
C++ + G + + C +CR YCS+ CQK+ W D HK EC K+ R
Sbjct: 49 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPD-HKRECKCLKSCKPR 98
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 286 ATCEKEVHGDQSVC-CGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMER 335
C++ + G + + C +CR YCS+ CQK+ W D HK EC K+ R
Sbjct: 48 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPD-HKRECKCLKSCKPR 97
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 286 ATCEKEVHGDQSVC-CGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMER 335
C++ + G + + C +CR YCS+ CQK+ W D HK EC K+ R
Sbjct: 47 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPD-HKRECKCLKSCKPR 96
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 286 ATCEKEVHGDQSVC-CGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMER 335
C++ + G + + C +CR YCS+ CQK+ W D HK EC K+ R
Sbjct: 47 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPD-HKRECKCLKSCKPR 96
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 671 IFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGR----------SFMRKFRLPGM 720
+ ADLPG+ +I+V++ D L IR E ES+ SF R+F LP
Sbjct: 20 VLYADLPGIDPSQIEVQM-DKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDS 78
Query: 721 INIDEISAGYEDGVLTVMAPR 741
+ D I+A +GVL + P+
Sbjct: 79 ADADGITAAGRNGVLEIRIPK 99
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 300 CGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMER 335
C +CR YCS+ CQK+ W D HK EC K+ R
Sbjct: 63 CSQCRVAKYCSAKCQKKAWPD-HKRECKCLKSCKPR 97
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 676 LPGVRKEEI---------KVEVEDSKYLIIRTEAVDESTIPGRS-FMRKFRLPGMINIDE 725
LPGV KE+I ++ + S +I +E + S IP R +LP + +
Sbjct: 74 LPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEEN 133
Query: 726 ISAGYEDGVLTVMAPR--SITRRGLLID 751
SA +E+GVL+V+ P+ S ++G+ I+
Sbjct: 134 ASAKFENGVLSVILPKAESSIKKGINIE 161
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 285 CATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYK 330
C TC K ++ CG+C+ YC TCQK W + HK+EC K
Sbjct: 52 CHTCFKR--QEKLHRCGQCKFAHYCDRTCQKDAWLN-HKNECAAIK 94
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 300 CGRCRAVIYCSSTCQKQQWKDTHKSEC 326
CGRC+ YC+ CQK+ W HK EC
Sbjct: 65 CGRCKQAFYCNVECQKEDWP-MHKLEC 90
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 300 CGRCRAVIYCSSTCQKQQWKDTHKSECG 327
CGRC+ YC+ CQK+ W HK EC
Sbjct: 65 CGRCKQAFYCNVECQKEDWP-MHKLECS 91
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 300 CGRCRAVIYCSSTCQKQQWKDTHKSEC 326
CGRC+ YC+ CQK+ W HK EC
Sbjct: 65 CGRCKQAFYCNVECQKEDWP-MHKLEC 90
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 300 CGRCRAVIYCSSTCQKQQWKDTHKSEC 326
CGRC+ YC CQK+ W HK EC
Sbjct: 65 CGRCKQAFYCDVECQKEDWP-LHKLEC 90
>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2KLR|B Chain B, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2YGD|A Chain A, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|B Chain B, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|C Chain C, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|D Chain D, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|E Chain E, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|F Chain F, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|G Chain G, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|H Chain H, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|I Chain I, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|J Chain J, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|K Chain K, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|L Chain L, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|M Chain M, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|N Chain N, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|O Chain O, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|P Chain P, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|Q Chain Q, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|R Chain R, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|S Chain S, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|T Chain T, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|U Chain U, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|V Chain V, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|W Chain W, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|X Chain X, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
Length = 175
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 24/157 (15%)
Query: 597 ITHPVTPNPFRSPVRNHSPSSNLPSYSNGFVFGAMEFPT-YELSPWNYILTAPAIFSYPI 655
I HP PF HSPS + + + FPT LSP + L P+ P
Sbjct: 5 IHHPWIRRPF---FPFHSPSRLFDQFFGEHLLESDLFPTSTSLSP--FYLRPPSFLRAP- 58
Query: 656 IPENYVHWTQTPESHI------FSA--DLPGVRKEEIKVEVEDSKYLI--IRTEAVDEST 705
W T S + FS D+ EE+KV+V + E DE
Sbjct: 59 ------SWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHG 112
Query: 706 IPGRSFMRKFRLPGMINIDEISAGY-EDGVLTVMAPR 741
R F RK+R+P ++ I++ DGVLTV PR
Sbjct: 113 FISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 149
>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157)
Length = 90
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 675 DLPGVRKEEIKVEVEDSKYLI--IRTEAVDESTIPGRSFMRKFRLPGMINIDEI-SAGYE 731
D+ EE+KV+V + E DE R F RK+R+P ++ I S+
Sbjct: 13 DVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSS 72
Query: 732 DGVLTVMAPR 741
DGVLTV PR
Sbjct: 73 DGVLTVNGPR 82
>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|B Chain B, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|C Chain C, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|D Chain D, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|E Chain E, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|F Chain F, Human Alphab-Crystallin Domain (Residues 67-157)
Length = 94
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 675 DLPGVRKEEIKVEVEDSKYLI--IRTEAVDESTIPGRSFMRKFRLPGMINIDEI-SAGYE 731
D+ EE+KV+V + E DE R F RK+R+P ++ I S+
Sbjct: 17 DVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSS 76
Query: 732 DGVLTVMAPR 741
DGVLTV PR
Sbjct: 77 DGVLTVNGPR 86
>pdb|2WJ7|A Chain A, Human Alphab Crystallin
pdb|2WJ7|B Chain B, Human Alphab Crystallin
pdb|2WJ7|C Chain C, Human Alphab Crystallin
pdb|2WJ7|D Chain D, Human Alphab Crystallin
pdb|2WJ7|E Chain E, Human Alphab Crystallin
Length = 94
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 675 DLPGVRKEEIKVEVEDSKYLI--IRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGY-E 731
D+ EE+KV+V + E DE R F RK+R+P ++ I++
Sbjct: 17 DVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSS 76
Query: 732 DGVLTVMAPR 741
DGVLTV PR
Sbjct: 77 DGVLTVNGPR 86
>pdb|1VZY|A Chain A, Crystal Structure Of The Bacillus Subtilis Hsp33
pdb|1VZY|B Chain B, Crystal Structure Of The Bacillus Subtilis Hsp33
Length = 291
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 7/135 (5%)
Query: 451 YILTALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQIVMVGPEVP 510
Y++ AL+ K R + + G W A A +G + S + ++ G +
Sbjct: 3 YLVKALAYDGKVRAYAARTTDMVNEGQRRHGTWPTASAALGRTMTASLMLGAMLKGDDKL 62
Query: 511 TNLSGTTSGISSRVRVNLLRGVYQEEATYLPSPHVIIALNCV--LD--RNGSWSGALDVI 566
T I + V +G E Y+ +P V LN LD R +G L V+
Sbjct: 63 TVKIEGGGPIGAIVADANAKG---EVRAYVSNPQVHFDLNAAGKLDVRRAVGTNGTLSVV 119
Query: 567 KTMGFPAFFTDQSEI 581
K +G FFT Q EI
Sbjct: 120 KDLGLREFFTGQVEI 134
>pdb|3L1G|A Chain A, Human Alphab Crystallin
Length = 96
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 699 EAVDESTIPGRSFMRKFRLPGMINIDEISAGY-EDGVLTVMAPR 741
E DE R F RK+R+P ++ I++ DGVLTV PR
Sbjct: 40 ERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 83
>pdb|2DJM|A Chain A, Solution Structure Of N-Terminal Starch-Binding Domain Of
Glucoamylase From Rhizopus Oryzae
pdb|2V8L|A Chain A, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|A Chain A, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|B Chain B, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|C Chain C, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|D Chain D, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2VQ4|A Chain A, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
Length = 106
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 649 AIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKY 693
A FS PI NY +WT FSA + G+++ IK EV Y
Sbjct: 56 ASFSGPISGSNYEYWT-------FSASVKGIKEFYIKYEVSGKTY 93
>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin
pdb|3N3E|B Chain B, Zebrafish Alphaa Crystallin
Length = 106
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 675 DLPGVRKEEIKVEVEDSKYLIIRT---EAVDESTIPGRSFMRKFRLPGMINIDEISAGYE 731
D+ +E+ V+V D Y+ I+ E D+ R F R++RLP ++ I+
Sbjct: 17 DVKHFSPDELSVKVTDD-YVEIQGKHGERQDDHGYISREFHRRYRLPSNVDQSAITCTLS 75
Query: 732 -DGVLTVMAPRS 742
DG+LT+ P++
Sbjct: 76 ADGLLTLCGPKT 87
>pdb|4EIB|A Chain A, Crystal Structure Of Circular Permuted Cbm21 (Cp90) Gives
Insight Into The Altered Selectivity On Carbohydrate
Binding.
pdb|4EIB|B Chain B, Crystal Structure Of Circular Permuted Cbm21 (Cp90) Gives
Insight Into The Altered Selectivity On Carbohydrate
Binding
Length = 109
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 649 AIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEV 688
A FS PI NY +WT FSA + G+++ IK EV
Sbjct: 76 ASFSGPISGSNYEYWT-------FSASVKGIKEFYIKYEV 108
>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto
Complexed With Smrt, A Corepressor
Length = 64
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 285 CATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECG 327
C C ++ S C C YC S CQ + W + H CG
Sbjct: 20 CWNCGRKA----SETCSGCNTARYCGSFCQHKDW-EKHHHICG 57
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 645 LTAPAIFSYPIIPENYVHWTQTPESH--IFSADLP----GVRK-EEIKVEVEDSKYLIIR 697
+T I SY + P+ Y + QT + + D P G+R E +++E++ K LII+
Sbjct: 993 VTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIK 1052
Query: 698 TEAVDE 703
E + E
Sbjct: 1053 LETISE 1058
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 645 LTAPAIFSYPIIPENYVHWTQTPESH--IFSADLP----GVRK-EEIKVEVEDSKYLIIR 697
+T I SY + P+ Y + QT + + D P G+R E +++E++ K LII+
Sbjct: 970 VTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIK 1029
Query: 698 TEAVDE 703
E + E
Sbjct: 1030 LETISE 1035
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 645 LTAPAIFSYPIIPENYVHWTQTPESH--IFSADLP----GVRK-EEIKVEVEDSKYLIIR 697
+T I SY + P+ Y + QT + + D P G+R E +++E++ K LII+
Sbjct: 970 VTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIK 1029
Query: 698 TEAVDE 703
E + E
Sbjct: 1030 LETISE 1035
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 645 LTAPAIFSYPIIPENYVHWTQTPESH--IFSADLP----GVRK-EEIKVEVEDSKYLIIR 697
+T I SY + P+ Y + QT + + D P G+R E +++E++ K LII+
Sbjct: 993 VTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIK 1052
Query: 698 TEAVDE 703
E + E
Sbjct: 1053 LETISE 1058
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 645 LTAPAIFSYPIIPENYVHWTQTPESH--IFSADLP----GVRK-EEIKVEVEDSKYLIIR 697
+T I SY + P+ Y + QT + + D P G+R E +++E++ K LII+
Sbjct: 970 VTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIK 1029
Query: 698 TEAVDE 703
E + E
Sbjct: 1030 LETISE 1035
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 645 LTAPAIFSYPIIPENYVHWTQTPESH--IFSADLP----GVRK-EEIKVEVEDSKYLIIR 697
+T I SY + P+ Y + QT + + D P G+R E +++E++ K LII+
Sbjct: 993 VTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIK 1052
Query: 698 TEAVDE 703
E + E
Sbjct: 1053 LETISE 1058
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 645 LTAPAIFSYPIIPENYVHWTQTPESH--IFSADLP----GVRK-EEIKVEVEDSKYLIIR 697
+T I SY + P+ Y + QT + + D P G+R E +++E++ K LII+
Sbjct: 993 VTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIK 1052
Query: 698 TEAVDE 703
E + E
Sbjct: 1053 LETISE 1058
>pdb|3IJF|X Chain X, Crystal Structure Of Cytidine Deaminase From Mycobacterium
Tuberculosis
Length = 133
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 221 DVQWPPEMAKGNDLVAVTVSHPP---------GQVYDERASSTSHSTPTKYAEPTKEETF 271
DV W M +GN A ++ P V D R + + Y E
Sbjct: 3 DVDW--NMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60
Query: 272 ADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVI 307
++S GG R A + HG + CGRCR V+
Sbjct: 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVL 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,675,011
Number of Sequences: 62578
Number of extensions: 1024913
Number of successful extensions: 2097
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2063
Number of HSP's gapped (non-prelim): 52
length of query: 766
length of database: 14,973,337
effective HSP length: 106
effective length of query: 660
effective length of database: 8,340,069
effective search space: 5504445540
effective search space used: 5504445540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)