Query 004229
Match_columns 766
No_of_seqs 558 out of 2717
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 19:47:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.8 2E-20 4.3E-25 179.9 11.2 96 658-756 32-138 (142)
2 PRK10743 heat shock protein Ib 99.8 1.4E-19 3.1E-24 173.4 10.8 92 659-753 35-137 (137)
3 COG0071 IbpA Molecular chapero 99.8 2.6E-19 5.6E-24 173.9 11.2 96 657-753 39-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.8 7.2E-19 1.6E-23 157.5 10.4 82 660-741 1-92 (92)
5 cd06479 ACD_HspB7_like Alpha c 99.8 1.6E-18 3.5E-23 151.6 9.4 79 662-741 2-81 (81)
6 cd06497 ACD_alphaA-crystallin_ 99.7 7.1E-18 1.5E-22 149.4 9.9 79 662-741 4-86 (86)
7 PF00011 HSP20: Hsp20/alpha cr 99.7 2.1E-17 4.5E-22 150.2 12.1 91 662-753 1-102 (102)
8 cd06471 ACD_LpsHSP_like Group 99.7 1.5E-17 3.2E-22 149.1 10.3 80 660-741 2-93 (93)
9 cd06498 ACD_alphaB-crystallin_ 99.7 1.9E-17 4.2E-22 146.0 9.8 79 663-742 2-84 (84)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.7 2.2E-17 4.7E-22 145.3 9.8 79 662-741 1-83 (83)
11 cd06470 ACD_IbpA-B_like Alpha- 99.7 4.6E-17 9.9E-22 145.4 10.8 80 659-741 1-90 (90)
12 cd06475 ACD_HspB1_like Alpha c 99.7 4.1E-17 8.8E-22 144.6 9.8 79 661-740 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.7 1E-16 2.2E-21 141.1 9.6 78 663-741 2-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.7 2.6E-16 5.6E-21 139.8 8.9 76 665-741 4-87 (87)
15 cd06477 ACD_HspB3_Like Alpha c 99.7 3.6E-16 7.8E-21 137.4 9.3 76 664-740 3-82 (83)
16 cd06482 ACD_HspB10 Alpha cryst 99.6 5.7E-16 1.2E-20 137.3 9.0 74 666-740 6-86 (87)
17 cd06526 metazoan_ACD Alpha-cry 99.6 5.3E-16 1.1E-20 136.4 8.8 74 667-741 6-83 (83)
18 cd06464 ACD_sHsps-like Alpha-c 99.6 3.9E-15 8.4E-20 130.5 10.4 79 662-741 1-88 (88)
19 cd06480 ACD_HspB8_like Alpha-c 99.5 5.4E-14 1.2E-18 125.6 9.6 80 661-741 8-91 (91)
20 KOG3591 Alpha crystallins [Pos 99.4 1.2E-12 2.6E-17 130.3 10.3 98 659-757 63-166 (173)
21 KOG0710 Molecular chaperone (s 99.4 5.7E-13 1.2E-17 135.6 6.8 87 658-744 84-182 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.2 1.7E-10 3.8E-15 97.5 9.6 78 663-741 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 98.9 5.7E-09 1.2E-13 90.1 9.3 71 663-744 1-71 (78)
24 PF01753 zf-MYND: MYND finger; 98.7 4.5E-09 9.8E-14 78.5 1.7 37 285-326 1-37 (37)
25 PF05455 GvpH: GvpH; InterPro 98.6 1.9E-07 4E-12 92.5 10.4 84 654-746 87-172 (177)
26 cd06463 p23_like Proteins cont 98.5 5.1E-07 1.1E-11 77.9 9.9 76 663-744 1-76 (84)
27 cd06466 p23_CS_SGT1_like p23_l 98.3 3.5E-06 7.6E-11 73.6 8.5 77 662-744 1-77 (84)
28 KOG1710 MYND Zn-finger and ank 98.1 7.1E-07 1.5E-11 93.5 0.5 88 235-330 270-363 (396)
29 PF04969 CS: CS domain; Inter 97.8 0.00034 7.4E-09 59.7 12.1 77 659-741 1-79 (79)
30 cd06465 p23_hB-ind1_like p23_l 97.3 0.0021 4.5E-08 59.3 10.8 78 659-743 1-78 (108)
31 PF13824 zf-Mss51: Zinc-finger 97.2 0.0003 6.6E-09 56.9 3.4 50 284-334 1-50 (55)
32 PF08190 PIH1: pre-RNA process 97.2 0.0013 2.9E-08 71.9 9.4 67 665-740 258-327 (328)
33 cd06489 p23_CS_hSgt1_like p23_ 97.1 0.003 6.5E-08 55.5 9.3 77 662-744 1-77 (84)
34 cd06467 p23_NUDC_like p23_like 96.9 0.0061 1.3E-07 53.3 9.3 74 662-744 2-77 (85)
35 cd06488 p23_melusin_like p23_l 96.9 0.01 2.2E-07 52.7 10.5 79 660-744 2-80 (87)
36 cd06468 p23_CacyBP p23_like do 96.7 0.017 3.8E-07 51.4 10.3 79 660-744 3-85 (92)
37 cd06493 p23_NUDCD1_like p23_NU 96.5 0.024 5.1E-07 50.1 9.7 76 661-745 1-78 (85)
38 cd00237 p23 p23 binds heat sho 95.7 0.13 2.8E-06 47.6 11.0 78 659-744 2-79 (106)
39 KOG3612 PHD Zn-finger protein 95.0 0.0057 1.2E-07 69.6 -0.5 45 279-330 524-568 (588)
40 cd06494 p23_NUDCD2_like p23-li 94.6 0.32 6.9E-06 44.0 10.0 77 659-745 6-84 (93)
41 PLN03088 SGT1, suppressor of 94.3 0.27 5.9E-06 54.9 10.7 82 657-744 155-236 (356)
42 KOG1309 Suppressor of G2 allel 92.6 0.38 8.1E-06 48.3 7.2 81 658-744 3-83 (196)
43 cd06490 p23_NCB5OR p23_like do 92.6 1.4 3.1E-05 39.1 10.4 77 661-745 1-81 (87)
44 PLN03158 methionine aminopepti 92.1 0.11 2.3E-06 59.0 3.1 41 281-326 8-55 (396)
45 KOG2084 Predicted histone tail 89.5 0.21 4.6E-06 56.9 2.4 72 226-328 22-93 (482)
46 cd06492 p23_mNUDC_like p23-lik 86.3 6.7 0.00015 34.9 9.5 73 663-744 3-79 (87)
47 cd06495 p23_NUDCD3_like p23-li 81.8 12 0.00026 34.5 9.4 79 660-744 6-87 (102)
48 KOG2061 Uncharacterized MYND Z 80.5 0.83 1.8E-05 50.6 1.5 46 281-330 135-180 (362)
49 KOG3362 Predicted BBOX Zn-fing 75.2 1.4 3.1E-05 42.6 1.2 34 281-319 117-150 (156)
50 PF04438 zf-HIT: HIT zinc fing 75.1 2.1 4.5E-05 30.7 1.8 28 283-315 3-30 (30)
51 PF12855 Ecl1: Life-span regul 68.5 2.5 5.4E-05 32.9 1.0 31 282-319 6-36 (43)
52 KOG4317 Predicted Zn-finger pr 62.5 3.3 7.2E-05 44.9 0.9 36 283-327 8-43 (383)
53 PLN03144 Carbon catabolite rep 56.0 7.4 0.00016 46.6 2.4 50 279-329 56-112 (606)
54 KOG2857 Predicted MYND Zn-fing 53.9 6.1 0.00013 38.2 1.1 33 283-324 6-38 (157)
55 PF00515 TPR_1: Tetratricopept 52.7 2.6 5.6E-05 29.8 -1.3 26 100-125 3-28 (34)
56 PF09889 DUF2116: Uncharacteri 52.5 10 0.00022 31.6 1.9 32 282-324 3-34 (59)
57 PRK01343 zinc-binding protein; 52.2 13 0.00029 30.7 2.6 29 282-319 9-37 (57)
58 PF13349 DUF4097: Domain of un 47.3 1.1E+02 0.0023 29.6 8.7 74 660-738 67-147 (166)
59 KOG0553 TPR repeat-containing 45.0 8.1 0.00018 42.1 0.4 28 98-125 149-176 (304)
60 PF13181 TPR_8: Tetratricopept 44.9 4.2 9.2E-05 28.6 -1.2 27 99-125 2-28 (34)
61 KOG3158 HSP90 co-chaperone p23 44.3 78 0.0017 32.0 7.0 78 658-743 7-84 (180)
62 cd06482 ACD_HspB10 Alpha cryst 44.1 40 0.00087 30.1 4.6 34 709-743 8-41 (87)
63 COG5091 SGT1 Suppressor of G2 42.7 17 0.00037 39.1 2.3 83 658-745 176-258 (368)
64 PF00856 SET: SET domain; Int 41.7 8.3 0.00018 36.1 -0.1 18 229-249 1-18 (162)
65 KOG1667 Zn2+-binding protein M 41.4 98 0.0021 33.1 7.5 84 658-746 214-297 (320)
66 cd06477 ACD_HspB3_Like Alpha c 41.0 61 0.0013 28.7 5.2 37 706-743 4-40 (83)
67 PF07719 TPR_2: Tetratricopept 39.0 5.7 0.00012 27.7 -1.3 26 100-125 3-28 (34)
68 PF09538 FYDLN_acid: Protein o 37.7 22 0.00048 33.2 2.0 29 280-308 7-37 (108)
69 PF13176 TPR_7: Tetratricopept 34.3 8.4 0.00018 28.1 -1.1 25 101-125 2-26 (36)
70 cd06470 ACD_IbpA-B_like Alpha- 33.8 77 0.0017 28.1 4.8 35 709-744 11-45 (90)
71 PRK00418 DNA gyrase inhibitor; 33.0 27 0.00058 29.5 1.6 32 283-319 7-38 (62)
72 smart00317 SET SET (Su(var)3-9 32.7 27 0.00057 31.1 1.7 27 220-249 2-28 (116)
73 cd06476 ACD_HspB2_like Alpha c 32.6 85 0.0018 27.7 4.8 34 708-742 6-39 (83)
74 PF03884 DUF329: Domain of unk 32.1 27 0.00058 29.0 1.4 32 283-319 3-34 (57)
75 cd03823 GT1_ExpE7_like This fa 32.0 98 0.0021 32.6 6.2 105 468-579 190-296 (359)
76 cd06497 ACD_alphaA-crystallin_ 31.8 89 0.0019 27.6 4.8 33 709-742 10-42 (86)
77 cd06478 ACD_HspB4-5-6 Alpha-cr 31.3 87 0.0019 27.5 4.7 33 709-742 7-39 (83)
78 PRK10743 heat shock protein Ib 30.1 90 0.002 30.3 5.0 33 710-743 46-78 (137)
79 cd06471 ACD_LpsHSP_like Group 27.7 78 0.0017 28.0 3.8 30 668-698 62-91 (93)
80 cd06479 ACD_HspB7_like Alpha c 27.1 1.2E+02 0.0026 26.7 4.8 35 708-743 7-41 (81)
81 cd06526 metazoan_ACD Alpha-cry 27.1 1E+02 0.0022 26.7 4.4 35 709-744 7-41 (83)
82 cd01141 TroA_d Periplasmic bin 27.0 1.3E+02 0.0029 29.6 5.8 33 541-578 68-100 (186)
83 PRK05518 rpl6p 50S ribosomal p 26.6 1.8E+02 0.0039 29.6 6.6 45 681-740 13-57 (180)
84 smart00028 TPR Tetratricopepti 26.1 14 0.00031 23.5 -1.0 26 100-125 3-28 (34)
85 TIGR02300 FYDLN_acid conserved 25.0 50 0.0011 31.7 2.1 28 280-307 7-36 (129)
86 PRK11597 heat shock chaperone 24.3 1.3E+02 0.0028 29.5 4.8 32 710-742 44-75 (142)
87 PF13174 TPR_6: Tetratricopept 23.8 14 0.00031 25.3 -1.4 22 103-124 5-26 (33)
88 PRK05498 rplF 50S ribosomal pr 23.6 1.4E+02 0.0031 30.2 5.2 44 681-740 12-55 (178)
89 cd06475 ACD_HspB1_like Alpha c 23.4 1.6E+02 0.0034 26.1 4.9 35 708-743 9-43 (86)
90 TIGR03653 arch_L6P archaeal ri 23.2 2.4E+02 0.0053 28.4 6.7 45 681-740 7-51 (170)
91 TIGR03277 methan_mark_9 putati 23.0 57 0.0012 30.3 2.0 24 7-30 42-65 (109)
92 KOG3591 Alpha crystallins [Pos 22.7 1.2E+02 0.0026 30.7 4.5 44 671-718 118-162 (173)
93 cd06481 ACD_HspB9_like Alpha c 22.7 1.5E+02 0.0033 26.2 4.7 33 709-742 7-39 (87)
94 TIGR03654 L6_bact ribosomal pr 22.2 2.3E+02 0.0051 28.6 6.5 44 681-740 11-54 (175)
95 PRK03379 vitamin B12-transport 22.2 2.1E+02 0.0046 30.2 6.5 47 541-592 71-118 (260)
96 PTZ00027 60S ribosomal protein 22.1 2.1E+02 0.0045 29.4 6.1 47 681-740 13-59 (190)
97 cd06498 ACD_alphaB-crystallin_ 21.7 1.7E+02 0.0036 25.8 4.7 33 709-742 7-39 (84)
98 cd03808 GT1_cap1E_like This fa 21.5 3.3E+02 0.0072 28.2 7.9 105 468-579 187-296 (359)
99 COG1456 CdhE CO dehydrogenase/ 20.8 1.3E+02 0.0029 33.7 4.6 57 539-595 157-231 (467)
100 PF08308 PEGA: PEGA domain; I 20.6 2.5E+02 0.0055 23.3 5.4 40 661-700 27-67 (71)
101 PF00011 HSP20: Hsp20/alpha cr 20.4 2.2E+02 0.0047 25.3 5.3 34 708-742 6-39 (102)
102 cd06472 ACD_ScHsp26_like Alpha 20.2 2.1E+02 0.0046 25.2 5.1 34 708-742 8-42 (92)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.83 E-value=2e-20 Score=179.92 Aligned_cols=96 Identities=16% Similarity=0.249 Sum_probs=83.7
Q ss_pred CccceEEE-cCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeecc--------CccccceEEEEEECCCCccccceEE
Q 004229 658 ENYVHWTQ-TPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDE--------STIPGRSFMRKFRLPGMINIDEISA 728 (766)
Q Consensus 658 ~~~vdv~e-~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~--------~e~~~~~F~R~~~LP~~vd~~~I~A 728 (766)
.|++||.| ++++|+|+++|||+++|||+|+|++| +|+|+|+++.+ .|+.+|+|+|+|.||++||.+ +|
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A 108 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA 108 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence 46899998 57799999999999999999999999 59999997542 245789999999999999998 69
Q ss_pred EEeCCEEEEEEecc--CCCCCeeccCCCCC
Q 004229 729 GYEDGVLTVMAPRS--ITRRGLLIDPAAVP 756 (766)
Q Consensus 729 ~~~nGvL~I~lPK~--~~~~~r~I~I~~~~ 756 (766)
+|+||||+|+|||. +..++++|+|+..|
T Consensus 109 ~~~nGVL~I~lPK~~~~~~~~rkI~I~~~~ 138 (142)
T PRK11597 109 TFVNGLLHIDLIRNEPEAIAPQRIAISERP 138 (142)
T ss_pred EEcCCEEEEEEeccCccccCCcEEEECCcc
Confidence 99999999999997 44578999997644
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.80 E-value=1.4e-19 Score=173.44 Aligned_cols=92 Identities=21% Similarity=0.329 Sum_probs=81.0
Q ss_pred ccceEE-EcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC--------ccccceEEEEEECCCCccccceEEE
Q 004229 659 NYVHWT-QTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES--------TIPGRSFMRKFRLPGMINIDEISAG 729 (766)
Q Consensus 659 ~~vdv~-e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~--------e~~~~~F~R~~~LP~~vd~~~I~A~ 729 (766)
|++||. +++++|+|+++|||++++||+|+|++| +|+|+|+++.+. |+.+|+|.|+|.||++||.++ |+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 589999 489999999999999999999999999 599999976432 356899999999999999994 99
Q ss_pred EeCCEEEEEEecc--CCCCCeeccCC
Q 004229 730 YEDGVLTVMAPRS--ITRRGLLIDPA 753 (766)
Q Consensus 730 ~~nGvL~I~lPK~--~~~~~r~I~I~ 753 (766)
|+||||+|++||. +..++|+|+|+
T Consensus 112 ~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 112 LVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred EeCCEEEEEEeCCCccccCCeEEeeC
Confidence 9999999999997 34567888874
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.6e-19 Score=173.87 Aligned_cols=96 Identities=33% Similarity=0.492 Sum_probs=86.3
Q ss_pred CCccceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeecc----------CccccceEEEEEECCCCccccce
Q 004229 657 PENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDE----------STIPGRSFMRKFRLPGMINIDEI 726 (766)
Q Consensus 657 ~~~~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~----------~e~~~~~F~R~~~LP~~vd~~~I 726 (766)
..|++||.+++++|+|+++||||+++||+|+++++. |+|+|+++.+ .++.+++|.|+|+||+.||.+.|
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~-l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNT-LTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCE-EEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 456899999999999999999999999999999995 9999999752 23468999999999999999999
Q ss_pred EEEEeCCEEEEEEeccCCC--CCeeccCC
Q 004229 727 SAGYEDGVLTVMAPRSITR--RGLLIDPA 753 (766)
Q Consensus 727 ~A~~~nGvL~I~lPK~~~~--~~r~I~I~ 753 (766)
+|+|+||||+|+|||.+++ +.++|+|+
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~~~~~~i~I~ 146 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146 (146)
T ss_pred eeEeeCcEEEEEEeccccccccCceeecC
Confidence 9999999999999999877 57777763
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.78 E-value=7.2e-19 Score=157.50 Aligned_cols=82 Identities=49% Similarity=0.819 Sum_probs=74.5
Q ss_pred cceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeecc----------CccccceEEEEEECCCCccccceEEE
Q 004229 660 YVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDE----------STIPGRSFMRKFRLPGMINIDEISAG 729 (766)
Q Consensus 660 ~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~----------~e~~~~~F~R~~~LP~~vd~~~I~A~ 729 (766)
++||+|++++|+|.++|||+++|||+|+++++.+|+|+|++..+ .|+.+++|.|+|.||++||.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 48999999999999999999999999999975359999997532 24568999999999999999999999
Q ss_pred EeCCEEEEEEec
Q 004229 730 YEDGVLTVMAPR 741 (766)
Q Consensus 730 ~~nGvL~I~lPK 741 (766)
|+||||+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 5
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.76 E-value=1.6e-18 Score=151.64 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=74.4
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEE-eCCEEEEEEe
Q 004229 662 HWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGY-EDGVLTVMAP 740 (766)
Q Consensus 662 dv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~-~nGvL~I~lP 740 (766)
||.|++++|.|.+|||||+||||+|+|++| .|+|+|+++.+.+..+++|.|+|.||.+||.++|+|+| +||+|+|+++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEec
Confidence 689999999999999999999999999999 59999999766666789999999999999999999998 9999999998
Q ss_pred c
Q 004229 741 R 741 (766)
Q Consensus 741 K 741 (766)
+
T Consensus 81 ~ 81 (81)
T cd06479 81 R 81 (81)
T ss_pred C
Confidence 6
No 6
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.74 E-value=7.1e-18 Score=149.43 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=71.2
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCcc---ccceEEEEEECCCCccccceEEEE-eCCEEEE
Q 004229 662 HWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTI---PGRSFMRKFRLPGMINIDEISAGY-EDGVLTV 737 (766)
Q Consensus 662 dv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~---~~~~F~R~~~LP~~vd~~~I~A~~-~nGvL~I 737 (766)
+|.+++++|.|.++||||++|||+|++++| +|+|+|++.+..+. ..+.|.|+|.||++||.++|+|+| +||||+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence 699999999999999999999999999999 59999997543321 235799999999999999999999 8999999
Q ss_pred EEec
Q 004229 738 MAPR 741 (766)
Q Consensus 738 ~lPK 741 (766)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9998
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.73 E-value=2.1e-17 Score=150.22 Aligned_cols=91 Identities=36% Similarity=0.550 Sum_probs=74.6
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeecc--------CccccceEEEEEECCCCccccceEEEEeCC
Q 004229 662 HWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDE--------STIPGRSFMRKFRLPGMINIDEISAGYEDG 733 (766)
Q Consensus 662 dv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~--------~e~~~~~F~R~~~LP~~vd~~~I~A~~~nG 733 (766)
||.+++++|.|.++|||+++++|+|+++++. |+|+|++... .++++++|.|+|.||+++|.++|+|+|+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~-L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNK-LVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTE-EEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCc-cceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 7999999999999999999999999999995 9999999821 234678999999999999999999999999
Q ss_pred EEEEEEeccCCC---CCeeccCC
Q 004229 734 VLTVMAPRSITR---RGLLIDPA 753 (766)
Q Consensus 734 vL~I~lPK~~~~---~~r~I~I~ 753 (766)
+|+|++||.... .+++|+|.
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEEccccccCCCCeEEEeC
Confidence 999999998766 46777763
No 8
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.73 E-value=1.5e-17 Score=149.14 Aligned_cols=80 Identities=38% Similarity=0.608 Sum_probs=73.6
Q ss_pred cceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeecc------------CccccceEEEEEECCCCccccceE
Q 004229 660 YVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDE------------STIPGRSFMRKFRLPGMINIDEIS 727 (766)
Q Consensus 660 ~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~------------~e~~~~~F~R~~~LP~~vd~~~I~ 727 (766)
++||.|++++|+|.++|||++++||+|+++++ .|+|+|+++.. .|+.+|+|.|+|.|| ++|.++|+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 68999999999999999999999999999999 59999998642 134689999999999 79999999
Q ss_pred EEEeCCEEEEEEec
Q 004229 728 AGYEDGVLTVMAPR 741 (766)
Q Consensus 728 A~~~nGvL~I~lPK 741 (766)
|+|+||+|+|++||
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999998
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.72 E-value=1.9e-17 Score=145.99 Aligned_cols=79 Identities=28% Similarity=0.458 Sum_probs=70.5
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCc---cccceEEEEEECCCCccccceEEEEe-CCEEEEE
Q 004229 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDEST---IPGRSFMRKFRLPGMINIDEISAGYE-DGVLTVM 738 (766)
Q Consensus 663 v~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e---~~~~~F~R~~~LP~~vd~~~I~A~~~-nGvL~I~ 738 (766)
+++++++|.|.++||||++|||+|++++| .|+|+|+++.+.+ ...+.|.|+|.||.+||.++|+|+|+ ||||+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEE
Confidence 57889999999999999999999999999 5999998764332 23568999999999999999999995 9999999
Q ss_pred Eecc
Q 004229 739 APRS 742 (766)
Q Consensus 739 lPK~ 742 (766)
+||+
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9985
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.72 E-value=2.2e-17 Score=145.35 Aligned_cols=79 Identities=25% Similarity=0.421 Sum_probs=70.2
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCcc---ccceEEEEEECCCCccccceEEEE-eCCEEEE
Q 004229 662 HWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTI---PGRSFMRKFRLPGMINIDEISAGY-EDGVLTV 737 (766)
Q Consensus 662 dv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~---~~~~F~R~~~LP~~vd~~~I~A~~-~nGvL~I 737 (766)
+|.+++++|.|.+|||||++|||+|++++| .|+|+|++..+.+. ..+.|.|+|.||.+||.++|+|+| +||||+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I 79 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTI 79 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEE
Confidence 478999999999999999999999999999 59999997643221 236799999999999999999999 6999999
Q ss_pred EEec
Q 004229 738 MAPR 741 (766)
Q Consensus 738 ~lPK 741 (766)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9998
No 11
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.71 E-value=4.6e-17 Score=145.43 Aligned_cols=80 Identities=25% Similarity=0.439 Sum_probs=72.0
Q ss_pred ccceEEEcC-CeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC---------ccccceEEEEEECCCCccccceEE
Q 004229 659 NYVHWTQTP-ESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES---------TIPGRSFMRKFRLPGMINIDEISA 728 (766)
Q Consensus 659 ~~vdv~e~~-~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~---------e~~~~~F~R~~~LP~~vd~~~I~A 728 (766)
|++||.+++ ++|+|.++|||+++|||+|+++++ .|+|+|+++... |+.+++|.|+|.||.++|.+ +|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 479999975 899999999999999999999999 599999987543 34589999999999999985 89
Q ss_pred EEeCCEEEEEEec
Q 004229 729 GYEDGVLTVMAPR 741 (766)
Q Consensus 729 ~~~nGvL~I~lPK 741 (766)
+|+||+|+|+||+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.71 E-value=4.1e-17 Score=144.57 Aligned_cols=79 Identities=28% Similarity=0.423 Sum_probs=71.6
Q ss_pred ceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCc---cccceEEEEEECCCCccccceEEEEe-CCEEE
Q 004229 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDEST---IPGRSFMRKFRLPGMINIDEISAGYE-DGVLT 736 (766)
Q Consensus 661 vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e---~~~~~F~R~~~LP~~vd~~~I~A~~~-nGvL~ 736 (766)
.||+|++++|.|+++|||+++|+|+|+++++. |+|+|+++.+.+ ...++|.|+|.||++||.++|+|+|+ ||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~-L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGV-VEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCE-EEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 58999999999999999999999999999995 999999864322 23478999999999999999999997 99999
Q ss_pred EEEe
Q 004229 737 VMAP 740 (766)
Q Consensus 737 I~lP 740 (766)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.69 E-value=1e-16 Score=141.09 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=69.5
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC---ccccceEEEEEECCCCccccceEEEEe-CCEEEEE
Q 004229 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES---TIPGRSFMRKFRLPGMINIDEISAGYE-DGVLTVM 738 (766)
Q Consensus 663 v~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~---e~~~~~F~R~~~LP~~vd~~~I~A~~~-nGvL~I~ 738 (766)
+..++++|.|.++||||++|||+|++++| .|+|+|+++.+. +...+.|.|+|.||.+||.++|+|+|+ ||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEE
Confidence 44678899999999999999999999999 599999985432 234679999999999999999999995 9999999
Q ss_pred Eec
Q 004229 739 APR 741 (766)
Q Consensus 739 lPK 741 (766)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.66 E-value=2.6e-16 Score=139.78 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=68.4
Q ss_pred EcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCc-------cccceEEEEEECCCCccccceEEEE-eCCEEE
Q 004229 665 QTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDEST-------IPGRSFMRKFRLPGMINIDEISAGY-EDGVLT 736 (766)
Q Consensus 665 e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e-------~~~~~F~R~~~LP~~vd~~~I~A~~-~nGvL~ 736 (766)
+.++.|.|.++||||++|||+|+|++|. |+|+|+++.+.+ +.+++|.|+|.||++||.++|+|+| +||||+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~-L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRK-LVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCE-EEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEE
Confidence 5678999999999999999999999995 999999864322 2468999999999999999999999 999999
Q ss_pred EEEec
Q 004229 737 VMAPR 741 (766)
Q Consensus 737 I~lPK 741 (766)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99996
No 15
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.65 E-value=3.6e-16 Score=137.43 Aligned_cols=76 Identities=25% Similarity=0.389 Sum_probs=67.8
Q ss_pred EEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC---ccccceEEEEEECCCCccccceEEEE-eCCEEEEEE
Q 004229 664 TQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES---TIPGRSFMRKFRLPGMINIDEISAGY-EDGVLTVMA 739 (766)
Q Consensus 664 ~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~---e~~~~~F~R~~~LP~~vd~~~I~A~~-~nGvL~I~l 739 (766)
-|++++|+|+++||||+||||+|++++| .|+|+|+++.+. ....++|+|+|.||.+||.++|+|+| +||||+|+.
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET 81 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence 3788999999999999999999999999 599999986532 22357999999999999999999998 899999997
Q ss_pred e
Q 004229 740 P 740 (766)
Q Consensus 740 P 740 (766)
|
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 6
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.64 E-value=5.7e-16 Score=137.27 Aligned_cols=74 Identities=20% Similarity=0.386 Sum_probs=66.8
Q ss_pred cCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC------ccccceEEEEEECCCCccccceEEEEeCC-EEEEE
Q 004229 666 TPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES------TIPGRSFMRKFRLPGMINIDEISAGYEDG-VLTVM 738 (766)
Q Consensus 666 ~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~------e~~~~~F~R~~~LP~~vd~~~I~A~~~nG-vL~I~ 738 (766)
++++|+|.+||||+++|||+|+|++| .|+|+|+++.+. ++.+|+|.|+|.||.+||.++|+|+|+|| +|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 56799999999999999999999999 599999986432 35789999999999999999999999876 99998
Q ss_pred Ee
Q 004229 739 AP 740 (766)
Q Consensus 739 lP 740 (766)
-|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 77
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.64 E-value=5.3e-16 Score=136.41 Aligned_cols=74 Identities=30% Similarity=0.570 Sum_probs=67.8
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC---ccccceEEEEEECCCCccccceEEEEeC-CEEEEEEec
Q 004229 667 PESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES---TIPGRSFMRKFRLPGMINIDEISAGYED-GVLTVMAPR 741 (766)
Q Consensus 667 ~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~---e~~~~~F~R~~~LP~~vd~~~I~A~~~n-GvL~I~lPK 741 (766)
+++|.|.++||||++|||+|+++++ .|+|+|+++... +..+++|.|+|.||.+||.++|+|+|+| |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 3699999999999999999999999 599999987653 3457899999999999999999999998 999999997
No 18
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.60 E-value=3.9e-15 Score=130.55 Aligned_cols=79 Identities=44% Similarity=0.653 Sum_probs=72.8
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC---------ccccceEEEEEECCCCccccceEEEEeC
Q 004229 662 HWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES---------TIPGRSFMRKFRLPGMINIDEISAGYED 732 (766)
Q Consensus 662 dv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~---------e~~~~~F~R~~~LP~~vd~~~I~A~~~n 732 (766)
|+.|++++|.|.++|||+++++|+|++.++. |.|+|++.... +..++.|.|+|.||.++|.++++|.|+|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~-l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGV-LTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCE-EEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC
Confidence 5789999999999999999999999999995 99999998543 3458999999999999999999999999
Q ss_pred CEEEEEEec
Q 004229 733 GVLTVMAPR 741 (766)
Q Consensus 733 GvL~I~lPK 741 (766)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.51 E-value=5.4e-14 Score=125.57 Aligned_cols=80 Identities=19% Similarity=0.344 Sum_probs=70.9
Q ss_pred ceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCc---cccceEEEEEECCCCccccceEEEEe-CCEEE
Q 004229 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDEST---IPGRSFMRKFRLPGMINIDEISAGYE-DGVLT 736 (766)
Q Consensus 661 vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e---~~~~~F~R~~~LP~~vd~~~I~A~~~-nGvL~ 736 (766)
--+.++++.|.|.+|+.||++|||+|++.+|. |+|+|+++++.+ ...++|.|+|.||++||.+.|+|.|. ||+|+
T Consensus 8 ~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~-L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~ 86 (91)
T cd06480 8 NPPPNSSEPWKVCVNVHSFKPEELTVKTKDGF-VEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLI 86 (91)
T ss_pred CCCCCCCCcEEEEEEeCCCCHHHcEEEEECCE-EEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEE
Confidence 33567889999999999999999999999995 999999876432 23689999999999999999999997 99999
Q ss_pred EEEec
Q 004229 737 VMAPR 741 (766)
Q Consensus 737 I~lPK 741 (766)
|.+|.
T Consensus 87 IeaP~ 91 (91)
T cd06480 87 IEAPQ 91 (91)
T ss_pred EEcCC
Confidence 99984
No 20
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-12 Score=130.26 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=86.9
Q ss_pred ccceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCcc---ccceEEEEEECCCCccccceEEEE-eCCE
Q 004229 659 NYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTI---PGRSFMRKFRLPGMINIDEISAGY-EDGV 734 (766)
Q Consensus 659 ~~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~---~~~~F~R~~~LP~~vd~~~I~A~~-~nGv 734 (766)
...++..+++.|.|.+|+..|++|+|+|++.|+ .|.|+|++++.++. -.+.|.|+|.||++||+++|++++ .+|+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGv 141 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGV 141 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCC-EEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCce
Confidence 357789999999999999999999999999999 59999999876433 358999999999999999999999 6999
Q ss_pred EEEEEeccCCCC--CeeccCCCCCc
Q 004229 735 LTVMAPRSITRR--GLLIDPAAVPE 757 (766)
Q Consensus 735 L~I~lPK~~~~~--~r~I~I~~~~~ 757 (766)
|+|++||.+... .|.|+|...++
T Consensus 142 LtI~ap~~~~~~~~er~ipI~~~~~ 166 (173)
T KOG3591|consen 142 LTIEAPKPPPKQDNERSIPIEQVGP 166 (173)
T ss_pred EEEEccCCCCcCccceEEeEeecCc
Confidence 999999998663 89999986653
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.7e-13 Score=135.56 Aligned_cols=87 Identities=43% Similarity=0.644 Sum_probs=79.4
Q ss_pred CccceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC------------ccccceEEEEEECCCCccccc
Q 004229 658 ENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES------------TIPGRSFMRKFRLPGMINIDE 725 (766)
Q Consensus 658 ~~~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~------------e~~~~~F~R~~~LP~~vd~~~ 725 (766)
.++++|.|++++|++.++|||+++++++|+++++.+|+|+|+++.+. ++..+.|.|+|.||++++.++
T Consensus 84 ~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ 163 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDE 163 (196)
T ss_pred cCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHH
Confidence 34678899999999999999999999999999986799999987543 356789999999999999999
Q ss_pred eEEEEeCCEEEEEEeccCC
Q 004229 726 ISAGYEDGVLTVMAPRSIT 744 (766)
Q Consensus 726 I~A~~~nGvL~I~lPK~~~ 744 (766)
|+|.|+||||+|++||.++
T Consensus 164 ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 164 IKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHHhhCCeEEEEEecccc
Confidence 9999999999999999987
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.16 E-value=1.7e-10 Score=97.46 Aligned_cols=78 Identities=40% Similarity=0.661 Sum_probs=70.6
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC--ccccceEEEEEECCCCccccceEEEEeCCEEEEEEe
Q 004229 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES--TIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAP 740 (766)
Q Consensus 663 v~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~--e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lP 740 (766)
|.++++.|.|++++||+.+++|+|++.++. |.|+|++.... +...+.|.+.+.||..+|.++++|.+.+|+|+|++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~-l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNV-LTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCE-EEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 467889999999999999999999999996 99999986432 345689999999999999999999999999999999
Q ss_pred c
Q 004229 741 R 741 (766)
Q Consensus 741 K 741 (766)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.92 E-value=5.7e-09 Score=90.12 Aligned_cols=71 Identities=24% Similarity=0.358 Sum_probs=65.3
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEEEecc
Q 004229 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742 (766)
Q Consensus 663 v~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~ 742 (766)
|.++++.+.|++++||+++++++|+++++. |.|++ ..|.+.+.||..||.++++|++.+|.|+|+|+|.
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~-l~i~~----------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLY-LKVNF----------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCE-EEEcC----------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeC
Confidence 467889999999999999999999999994 99987 2599999999999999999999999999999997
Q ss_pred CC
Q 004229 743 IT 744 (766)
Q Consensus 743 ~~ 744 (766)
++
T Consensus 70 ~~ 71 (78)
T cd06469 70 EP 71 (78)
T ss_pred CC
Confidence 65
No 24
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.72 E-value=4.5e-09 Score=78.46 Aligned_cols=37 Identities=49% Similarity=1.153 Sum_probs=32.7
Q ss_pred cccCCCcccCCCcccCCCCCceeecCHHHHhhhchhhhhhhc
Q 004229 285 CATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC 326 (766)
Q Consensus 285 C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~~~Hk~eC 326 (766)
|++|++. .+.+|++|+.++|||++||+.||+ .||.+|
T Consensus 1 C~~C~~~----~~~~C~~C~~~~YCs~~Cq~~~w~-~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKP----ALKRCSRCKSVYYCSEECQRADWP-YHKFEC 37 (37)
T ss_dssp -TTTSSC----SSEEETTTSSSEESSHHHHHHHHH-HHCCTH
T ss_pred CcCCCCC----cCCcCCCCCCEEecCHHHHHHHHH-HHhhhC
Confidence 7889885 456999999999999999999997 899987
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.62 E-value=1.9e-07 Score=92.48 Aligned_cols=84 Identities=21% Similarity=0.376 Sum_probs=66.6
Q ss_pred CCCCCccceEEEcCC-eEEEEEEcCCCCCCC-eEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEe
Q 004229 654 PIIPENYVHWTQTPE-SHIFSADLPGVRKEE-IKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYE 731 (766)
Q Consensus 654 ~~~~~~~vdv~e~~~-~~~i~~dLPG~~ked-I~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~ 731 (766)
.....+.+++.+.++ +++|.+|||||++++ |+|.++.+. ..|.... .+.+.+++.||.. +.+.++|+|+
T Consensus 87 ~~~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~-~~L~i~~-------~~~~~krv~L~~~-~~e~~~~t~n 157 (177)
T PF05455_consen 87 EDEESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDE-GALTIRV-------GEKYLKRVALPWP-DPEITSATFN 157 (177)
T ss_pred CCcceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCC-ceEEEec-------CCceEeeEecCCC-ccceeeEEEe
Confidence 334455789998888 699999999999988 999999552 4444332 1347789999976 7899999999
Q ss_pred CCEEEEEEeccCCCC
Q 004229 732 DGVLTVMAPRSITRR 746 (766)
Q Consensus 732 nGvL~I~lPK~~~~~ 746 (766)
||||+|++-+.++..
T Consensus 158 NgILEIri~~~~~~~ 172 (177)
T PF05455_consen 158 NGILEIRIRRTEESS 172 (177)
T ss_pred CceEEEEEeecCCCC
Confidence 999999999987664
No 26
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.55 E-value=5.1e-07 Score=77.87 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=68.4
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEEEecc
Q 004229 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742 (766)
Q Consensus 663 v~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~ 742 (766)
|.++++.+.|.+.+||..+++++|.++++. |.|++... ..+.|...+.|+..||.++..+++++|.|+|+|+|.
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~-l~i~~~~~-----~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~ 74 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKS-LTVSVKGG-----GGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKK 74 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCE-EEEEeeCC-----CCCceEEeeEccCccchhhcEEEEeCCEEEEEEEEC
Confidence 457889999999999999999999999995 99998753 236789999999999999999999999999999998
Q ss_pred CC
Q 004229 743 IT 744 (766)
Q Consensus 743 ~~ 744 (766)
.+
T Consensus 75 ~~ 76 (84)
T cd06463 75 EP 76 (84)
T ss_pred CC
Confidence 75
No 27
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.27 E-value=3.5e-06 Score=73.57 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=69.2
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEEEec
Q 004229 662 HWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPR 741 (766)
Q Consensus 662 dv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK 741 (766)
||+++++.+.|++.+||+.+++++|+++++. |.|++... ....|...+.|+..|+.++.++.+.+|.|+|+|.|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~-l~i~~~~~-----~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K 74 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQS-LSVSIILP-----GGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKK 74 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCE-EEEEEECC-----CCCeEEEecccccccCchhcEEEEeCeEEEEEEEc
Confidence 6889999999999999999999999999996 99987742 23578999999999999999999999999999999
Q ss_pred cCC
Q 004229 742 SIT 744 (766)
Q Consensus 742 ~~~ 744 (766)
...
T Consensus 75 ~~~ 77 (84)
T cd06466 75 AEP 77 (84)
T ss_pred CCC
Confidence 764
No 28
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.10 E-value=7.1e-07 Score=93.50 Aligned_cols=88 Identities=25% Similarity=0.486 Sum_probs=58.4
Q ss_pred eeeccCCCCCccccccc------ccCCCCCCCcccCCCccccccccccccCCCCcccccCCCcccCCCcccCCCCCceee
Q 004229 235 VAVTVSHPPGQVYDERA------SSTSHSTPTKYAEPTKEETFADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIY 308 (766)
Q Consensus 235 ~~a~~d~~pG~vi~~~~------s~~~~e~P~~ya~~~~~~~~~~~~~~~~~~~~~C~~C~k~~~~~~l~~C~~C~~v~Y 308 (766)
+-+.++||-.+..+..- .+...+.|+.|.+...+ ....+. -...+.|..|+... +.++|+.|++|.|
T Consensus 270 Re~vr~FPy~e~tl~~ql~~~~~~~~ig~~P~A~~vl~qA--i~Gqr~--~~d~~fCstCG~~g---a~KrCs~CKav~Y 342 (396)
T KOG1710|consen 270 REAVRSFPYKESTLHDQLQKALQKSQIGERPSAYEVLVQA--IFGQRI--AADCQFCSTCGHPG---AKKRCSQCKAVAY 342 (396)
T ss_pred HHHHHhCCchHHHHHHHHHHHhChhhccCCCcHHHHHHHH--HcCcee--EEecccccccCCCC---ccchhhhhHHHHH
Confidence 34557777766543211 13334557666543311 111111 12256888888763 6799999999999
Q ss_pred cCHHHHhhhchhhhhhhchhhH
Q 004229 309 CSSTCQKQQWKDTHKSECGLYK 330 (766)
Q Consensus 309 CS~eCq~~dw~~~Hk~eC~~l~ 330 (766)
|+++||+.||. .||+.|+.+-
T Consensus 343 CdqeCQk~hWf-~HKK~C~~L~ 363 (396)
T KOG1710|consen 343 CDQECQKFHWF-IHKKVCSFLL 363 (396)
T ss_pred HHHHHHHhhhH-HHHHHHHHHH
Confidence 99999999999 9999999993
No 29
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.82 E-value=0.00034 Score=59.66 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=65.7
Q ss_pred ccceEEEcCCeEEEEEEcCCC--CCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEE
Q 004229 659 NYVHWTQTPESHIFSADLPGV--RKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLT 736 (766)
Q Consensus 659 ~~vdv~e~~~~~~i~~dLPG~--~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~ 736 (766)
|+++|.++++.+.|.+.+++. ++++++|+++++. |.|+...... ..|.....|...|+++.....++++.|.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~-l~v~~~~~~~-----~~~~~~~~L~~~I~~~~s~~~~~~~~i~ 74 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTS-LSVSIKSGDG-----KEYLLEGELFGEIDPDESTWKVKDNKIE 74 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTE-EEEEEEETTS-----CEEEEEEEBSS-BECCCEEEEEETTEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeE-EEEEEEccCC-----ceEEEEEEEeeeEcchhcEEEEECCEEE
Confidence 468999999999999999665 5999999999996 9998764221 6788899999999999999999999999
Q ss_pred EEEec
Q 004229 737 VMAPR 741 (766)
Q Consensus 737 I~lPK 741 (766)
|+|.|
T Consensus 75 i~L~K 79 (79)
T PF04969_consen 75 ITLKK 79 (79)
T ss_dssp EEEEB
T ss_pred EEEEC
Confidence 99987
No 30
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.33 E-value=0.0021 Score=59.34 Aligned_cols=78 Identities=14% Similarity=0.265 Sum_probs=68.2
Q ss_pred ccceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEE
Q 004229 659 NYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVM 738 (766)
Q Consensus 659 ~~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~ 738 (766)
|+++|+.+++.+.|++.+||+ ++++|+++.+. |.|++.... ....|.-.+.|...|+.++.+.++.++.|.|+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~-l~v~~~~~~----~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~ 73 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTS-LSFKAKGGG----GGKKYEFDLEFYKEIDPEESKYKVTGRQIEFV 73 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCE-EEEEEEcCC----CCeeEEEEeEhhhhccccccEEEecCCeEEEE
Confidence 368999999999999999998 89999999996 999886421 23457888899999999999999999999999
Q ss_pred EeccC
Q 004229 739 APRSI 743 (766)
Q Consensus 739 lPK~~ 743 (766)
|.|.+
T Consensus 74 L~K~~ 78 (108)
T cd06465 74 LRKKE 78 (108)
T ss_pred EEECC
Confidence 99987
No 31
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=97.22 E-value=0.0003 Score=56.87 Aligned_cols=50 Identities=20% Similarity=0.532 Sum_probs=41.1
Q ss_pred ccccCCCcccCCCcccCCCCCceeecCHHHHhhhchhhhhhhchhhHHhhh
Q 004229 284 QCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMME 334 (766)
Q Consensus 284 ~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~~~Hk~eC~~l~~~~~ 334 (766)
.|.+|++..-...-..|+.|....|||+++++.|.+ .|+..|..|++...
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e-~H~~~c~~LRqvNe 50 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYE-EHRQLCERLRQVNE 50 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHH-HHHHHHHHHHHhcc
Confidence 388888743223568899999999999999999988 89999999987543
No 32
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.19 E-value=0.0013 Score=71.90 Aligned_cols=67 Identities=25% Similarity=0.480 Sum_probs=59.3
Q ss_pred EcCCeEEEEEEcCCC-CCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEE--eCCEEEEEEe
Q 004229 665 QTPESHIFSADLPGV-RKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGY--EDGVLTVMAP 740 (766)
Q Consensus 665 e~~~~~~i~~dLPG~-~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~--~nGvL~I~lP 740 (766)
...+.++|+++|||+ +..+|+|+|+++. |.|.... ..|.-.+.||..||.+..+|.| +.++|+|++|
T Consensus 258 ~~p~~lvv~i~LP~~~s~~~i~LdV~~~~-l~l~~~~--------~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 258 GSPEELVVEIELPGVESASDIDLDVSEDR-LSLSSPK--------PKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCCceEEEEEECCCcCccceeEEEEeCCE-EEEEeCC--------CceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 445789999999999 8899999999996 8887664 2788899999999999999999 4699999998
No 33
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.14 E-value=0.003 Score=55.48 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=66.5
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEEEec
Q 004229 662 HWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPR 741 (766)
Q Consensus 662 dv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK 741 (766)
||+.+++.+.|++.++|+.+++++|+++++. |.+++.... ...|.-.+.|...|++++.+.+...+-+.|+|.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~-l~~~~~~~~-----~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 74 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRE-LSATVKLPS-----GNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKK 74 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCE-EEEEEECCC-----CCcEEEeeecCceecchhcEEEEeCcEEEEEEEc
Confidence 6788999999999999999999999999996 999887521 1247888899999999988888889999999999
Q ss_pred cCC
Q 004229 742 SIT 744 (766)
Q Consensus 742 ~~~ 744 (766)
.+.
T Consensus 75 ~~~ 77 (84)
T cd06489 75 TEA 77 (84)
T ss_pred CCC
Confidence 753
No 34
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=96.94 E-value=0.0061 Score=53.32 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=61.7
Q ss_pred eEEEcCCeEEEEEEcC-CCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeC-CEEEEEE
Q 004229 662 HWTQTPESHIFSADLP-GVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYED-GVLTVMA 739 (766)
Q Consensus 662 dv~e~~~~~~i~~dLP-G~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~n-GvL~I~l 739 (766)
+|.++++.+.|++.+| |++++|++|+++++. |.|+... +...-.-.|...||.++..-++.+ ..|.|+|
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~-l~v~~~~--------~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L 72 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPKH-LKVGVKG--------GEPLLDGELYAKVKVDESTWTLEDGKLLEITL 72 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEcCE-EEEEECC--------CCceEcCcccCceeEcCCEEEEeCCCEEEEEE
Confidence 5789999999999997 789999999999996 9998752 112233468899999998888888 9999999
Q ss_pred eccCC
Q 004229 740 PRSIT 744 (766)
Q Consensus 740 PK~~~ 744 (766)
+|.++
T Consensus 73 ~K~~~ 77 (85)
T cd06467 73 EKRNE 77 (85)
T ss_pred EECCC
Confidence 99875
No 35
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.89 E-value=0.01 Score=52.73 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=68.5
Q ss_pred cceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEEE
Q 004229 660 YVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMA 739 (766)
Q Consensus 660 ~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~l 739 (766)
+.||+.+++.+.|++.+.|+.+++++|+++++. |.|+..-.. ...|...+.|-..||+++.+-+...+-+.|+|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~-l~v~~~~~~-----~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L 75 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTV-LTIHIVFEG-----NKEFQLDIELWGVIDVEKSSVNMLPTKVEIKL 75 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCE-EEEEEECCC-----CceEEEEeeccceEChhHcEEEecCcEEEEEE
Confidence 579999999999999999999999999999986 888765422 23588889999999999988888899999999
Q ss_pred eccCC
Q 004229 740 PRSIT 744 (766)
Q Consensus 740 PK~~~ 744 (766)
.|.++
T Consensus 76 ~K~~~ 80 (87)
T cd06488 76 RKAEP 80 (87)
T ss_pred EeCCC
Confidence 99864
No 36
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=96.67 E-value=0.017 Score=51.38 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=65.9
Q ss_pred cceEEEcCCeEEEEEEcCCCCC---CCeEEEEECCeeEEEEEEeeccCccccceEEEEEE-CCCCccccceEEEEeCCEE
Q 004229 660 YVHWTQTPESHIFSADLPGVRK---EEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFR-LPGMINIDEISAGYEDGVL 735 (766)
Q Consensus 660 ~vdv~e~~~~~~i~~dLPG~~k---edI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~-LP~~vd~~~I~A~~~nGvL 735 (766)
..+|.++++.+.|++.+|+..+ ++++|+++++. |.|++...+ ...|.-.+. |-..|+.++.+.....+-+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~-l~v~~~~~~-----~~~~~~~~~~L~~~I~~e~s~~~~~~~ki 76 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERS-FELKVHDLN-----GKNYRFTINRLLKKIDPEKSSFKVKTDRI 76 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCE-EEEEEECCC-----CcEEEEEehHhhCccCccccEEEEeCCEE
Confidence 4789999999999999999987 99999999996 999885311 124555664 8899999998888899999
Q ss_pred EEEEeccCC
Q 004229 736 TVMAPRSIT 744 (766)
Q Consensus 736 ~I~lPK~~~ 744 (766)
.|+|.|.++
T Consensus 77 ~i~L~K~~~ 85 (92)
T cd06468 77 VITLAKKKE 85 (92)
T ss_pred EEEEEeCCC
Confidence 999999875
No 37
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.47 E-value=0.024 Score=50.06 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=59.6
Q ss_pred ceEEEcCCeEEEEEEcC-CCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCC-EEEEE
Q 004229 661 VHWTQTPESHIFSADLP-GVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDG-VLTVM 738 (766)
Q Consensus 661 vdv~e~~~~~~i~~dLP-G~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nG-vL~I~ 738 (766)
++|+.+.+...|++.+| |++++|++|+++.+. |.|.... . ..+ -.-.|...|+.+.-.=++++| .|.|.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~-l~v~~~~-~------~~~-~~g~L~~~I~~d~Stw~i~~~~~l~i~ 71 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDH-ISIALKD-Q------APL-LEGKLYSSIDHESSTWIIKENKSLEVS 71 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCE-EEEEeCC-C------CeE-EeCcccCcccccCcEEEEeCCCEEEEE
Confidence 36889999999999996 999999999999996 8886531 1 112 344788999999866666677 79999
Q ss_pred EeccCCC
Q 004229 739 APRSITR 745 (766)
Q Consensus 739 lPK~~~~ 745 (766)
|.|.++.
T Consensus 72 L~K~~~~ 78 (85)
T cd06493 72 LIKKDEG 78 (85)
T ss_pred EEECCCC
Confidence 9998743
No 38
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=95.68 E-value=0.13 Score=47.61 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=63.8
Q ss_pred ccceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEE
Q 004229 659 NYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVM 738 (766)
Q Consensus 659 ~~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~ 738 (766)
|+++|....+.+.|++++|+ .+|++|+++++. |.++|... . ...|.-.+.|-..|++++-+-+...--+.|.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~-l~f~~~~~--~---g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~ 73 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSK-LTFSCLNG--D---NVKIYNEIELYDRVDPNDSKHKRTDRSILCC 73 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCE-EEEEEECC--C---CcEEEEEEEeecccCcccCeEEeCCceEEEE
Confidence 47899999999999999999 589999999996 99998542 1 1236677888899999987766667788999
Q ss_pred EeccCC
Q 004229 739 APRSIT 744 (766)
Q Consensus 739 lPK~~~ 744 (766)
|.|.++
T Consensus 74 L~K~~~ 79 (106)
T cd00237 74 LRKGKE 79 (106)
T ss_pred EEeCCC
Confidence 999864
No 39
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.98 E-value=0.0057 Score=69.60 Aligned_cols=45 Identities=31% Similarity=0.746 Sum_probs=38.3
Q ss_pred CCCCcccccCCCcccCCCcccCCCCCceeecCHHHHhhhchhhhhhhchhhH
Q 004229 279 NGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYK 330 (766)
Q Consensus 279 ~~~~~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~~~Hk~eC~~l~ 330 (766)
..++.-|.+|..+ +...| |-...|||.+||..||+ .|+.-|..-+
T Consensus 524 tKkKQWC~nC~~E----Aiy~C--CWNTSYCsveCQQ~HW~-~H~ksCrrk~ 568 (588)
T KOG3612|consen 524 TKKKQWCYNCLDE----AIYHC--CWNTSYCSVECQQGHWP-EHRKSCRRKK 568 (588)
T ss_pred HHHHHHHHhhhHH----HHHHh--hccccccCcchhhccch-hHhhhhcccC
Confidence 4566789999887 55667 88999999999999999 9999998654
No 40
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.64 E-value=0.32 Score=44.00 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=60.7
Q ss_pred ccceEEEcCCeEEEEEEcC-CCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCE-EE
Q 004229 659 NYVHWTQTPESHIFSADLP-GVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGV-LT 736 (766)
Q Consensus 659 ~~vdv~e~~~~~~i~~dLP-G~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGv-L~ 736 (766)
..++|..+.+.+.|++.+| |++++|++|.+..+. |.|.-+.+ + -+. =.|...|+.+.-.=++++|- |.
T Consensus 6 ~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~-l~V~~~g~---~----~l~--G~L~~~I~~destWtled~k~l~ 75 (93)
T cd06494 6 PWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRD-ISLAVKGQ---E----VLK--GKLFDSVVADECTWTLEDRKLIR 75 (93)
T ss_pred CCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCE-EEEEECCE---E----EEc--CcccCccCcccCEEEEECCcEEE
Confidence 3688999999999999998 899999999999996 88875211 0 111 16788899998777787775 89
Q ss_pred EEEeccCCC
Q 004229 737 VMAPRSITR 745 (766)
Q Consensus 737 I~lPK~~~~ 745 (766)
|.|.|....
T Consensus 76 I~L~K~~~~ 84 (93)
T cd06494 76 IVLTKSNRD 84 (93)
T ss_pred EEEEeCCCC
Confidence 999998643
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.30 E-value=0.27 Score=54.90 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=69.8
Q ss_pred CCccceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEE
Q 004229 657 PENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLT 736 (766)
Q Consensus 657 ~~~~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~ 736 (766)
+..+.||+.+++.++|++-+.|+.+++++|+++++. |.|+..... ...|...+.|-..|++++.+.+..---+.
T Consensus 155 ~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~-l~v~~~~~~-----~~~y~~~~~L~~~I~p~~s~~~v~~~Kie 228 (356)
T PLN03088 155 PKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQI-LSVVIEVPG-----EDAYHLQPRLFGKIIPDKCKYEVLSTKIE 228 (356)
T ss_pred CccccceeecCCEEEEEEEecCCChHHcEEEeecCE-EEEEEecCC-----CcceeecccccccccccccEEEEecceEE
Confidence 346899999999999999999999999999999996 888875422 13466778999999999988888888999
Q ss_pred EEEeccCC
Q 004229 737 VMAPRSIT 744 (766)
Q Consensus 737 I~lPK~~~ 744 (766)
|+|.|.+.
T Consensus 229 i~l~K~~~ 236 (356)
T PLN03088 229 IRLAKAEP 236 (356)
T ss_pred EEEecCCC
Confidence 99999864
No 42
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=92.64 E-value=0.38 Score=48.26 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=63.3
Q ss_pred CccceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEE
Q 004229 658 ENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTV 737 (766)
Q Consensus 658 ~~~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I 737 (766)
.++.||+.++...+|++-.+|+-++|+.|++.++. |.|..+-.. ...|.-...|-..|.+++.+-..----++|
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~-l~~~~~~~~-----g~~~~l~~~L~~~I~pe~~s~k~~stKVEI 76 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENT-LSIVIQLPS-----GSEYNLQLKLYHEIIPEKSSFKVFSTKVEI 76 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecce-EEEEEecCC-----chhhhhhHHhcccccccceeeEeeeeeEEE
Confidence 45789999999999999999999999999999984 877665432 124555555777888888666666677889
Q ss_pred EEeccCC
Q 004229 738 MAPRSIT 744 (766)
Q Consensus 738 ~lPK~~~ 744 (766)
+|+|.+.
T Consensus 77 ~L~K~~~ 83 (196)
T KOG1309|consen 77 TLAKAEI 83 (196)
T ss_pred Eeccccc
Confidence 9998643
No 43
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=92.60 E-value=1.4 Score=39.10 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=58.3
Q ss_pred ceEEEcCCeEEEEEEcCC--CCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEe--CCEEE
Q 004229 661 VHWTQTPESHIFSADLPG--VRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYE--DGVLT 736 (766)
Q Consensus 661 vdv~e~~~~~~i~~dLPG--~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~--nGvL~ 736 (766)
.||+.+++..+|++-..+ ..++++.+..+++. |.|+-... ...|...+.|-..|+.+. +.++. -|-++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~-l~v~~~~~------~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVE 72 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRE-LRVEIILG------DKSYLLHLDLSNEVQWPC-EVRISTETGKIE 72 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCE-EEEEEECC------CceEEEeeeccccCCCCc-EEEEcccCceEE
Confidence 389999999999999885 55566666667775 88875432 134888889999998775 55554 78999
Q ss_pred EEEeccCCC
Q 004229 737 VMAPRSITR 745 (766)
Q Consensus 737 I~lPK~~~~ 745 (766)
|+|.|.++.
T Consensus 73 I~L~K~e~~ 81 (87)
T cd06490 73 LVLKKKEPE 81 (87)
T ss_pred EEEEcCCCC
Confidence 999997753
No 44
>PLN03158 methionine aminopeptidase; Provisional
Probab=92.09 E-value=0.11 Score=59.04 Aligned_cols=41 Identities=34% Similarity=0.794 Sum_probs=33.8
Q ss_pred CCcccccCCCcccCCCcccCCCCCc-------eeecCHHHHhhhchhhhhhhc
Q 004229 281 GLRQCATCEKEVHGDQSVCCGRCRA-------VIYCSSTCQKQQWKDTHKSEC 326 (766)
Q Consensus 281 ~~~~C~~C~k~~~~~~l~~C~~C~~-------v~YCS~eCq~~dw~~~Hk~eC 326 (766)
+...|..|++. +.+.|+.|.. .++||++|=+..|+ .||..=
T Consensus 8 ~~~~c~~c~~~----a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 55 (396)
T PLN03158 8 SPLACARCSKP----AHLQCPKCLELKLPREGASFCSQDCFKAAWS-SHKSVH 55 (396)
T ss_pred CcccccCCCCc----ccccCccchhcCCCCCCceeECHHHHHHHHH-HHHHHH
Confidence 44569999986 4588999964 78999999999999 898754
No 45
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=89.45 E-value=0.21 Score=56.87 Aligned_cols=72 Identities=25% Similarity=0.417 Sum_probs=57.9
Q ss_pred CCCCCCCceeeeccCCCCCcccccccccCCCCCCCcccCCCccccccccccccCCCCcccccCCCcccCCCcccCCCCCc
Q 004229 226 PEMAKGNDLVAVTVSHPPGQVYDERASSTSHSTPTKYAEPTKEETFADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRA 305 (766)
Q Consensus 226 ~~~GRg~~~~~a~~d~~pG~vi~~~~s~~~~e~P~~ya~~~~~~~~~~~~~~~~~~~~~C~~C~k~~~~~~l~~C~~C~~ 305 (766)
++.|||+ +|+.+|+.|++|++ +.| +++.+. ...|..|... ....|.+|..
T Consensus 22 ~~~Gr~~---~a~~~i~~g~~i~~-------e~p--~~~~p~--------------~~~~~~c~~~----~~~~C~~~~~ 71 (482)
T KOG2084|consen 22 PELGRGL---VATQAIEAGEVILE-------EEP--LVVGPA--------------SKSCSRCLGC----SCDHCRRCLE 71 (482)
T ss_pred cccCcce---eeecccCCCceEEe-------cCc--ceeeec--------------ccCCcccccc----chhhhhcCCc
Confidence 6899999 99999999999999 888 664441 1566666654 4577999999
Q ss_pred eeecCHHHHhhhchhhhhhhchh
Q 004229 306 VIYCSSTCQKQQWKDTHKSECGL 328 (766)
Q Consensus 306 v~YCS~eCq~~dw~~~Hk~eC~~ 328 (766)
..||++.++...|. .|+..|..
T Consensus 72 ~~~~~~~~~~~~~~-~~~~~~~~ 93 (482)
T KOG2084|consen 72 AIECNKCQQRGWAL-CGKFACSA 93 (482)
T ss_pred cHhhhhhhccCccc-cchhhcch
Confidence 99999888888777 78887777
No 46
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=86.26 E-value=6.7 Score=34.91 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=54.8
Q ss_pred EEEcCCeEEEEEEcC-C--CCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCC-EEEEE
Q 004229 663 WTQTPESHIFSADLP-G--VRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDG-VLTVM 738 (766)
Q Consensus 663 v~e~~~~~~i~~dLP-G--~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nG-vL~I~ 738 (766)
|..+.+...|++.+| | +++.||+|++..+. |.|.-+.+ ...-.=.|...|+.+.-.=++++| .|.|+
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~-l~v~~~g~--------~~~i~G~L~~~V~~des~Wtled~~~l~i~ 73 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKH-LKVGLKGQ--------PPIIDGELYNEVKVEESSWLIEDGKVVTVN 73 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEecCE-EEEEECCC--------ceEEeCcccCcccccccEEEEeCCCEEEEE
Confidence 556778899999996 3 89999999999995 88855321 111222678889998867678886 89999
Q ss_pred EeccCC
Q 004229 739 APRSIT 744 (766)
Q Consensus 739 lPK~~~ 744 (766)
|-|...
T Consensus 74 L~K~~~ 79 (87)
T cd06492 74 LEKINK 79 (87)
T ss_pred EEECCC
Confidence 999854
No 47
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=81.83 E-value=12 Score=34.51 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=58.0
Q ss_pred cceEEEcCCeEEEEEEcC-CC-CCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCC-EEE
Q 004229 660 YVHWTQTPESHIFSADLP-GV-RKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDG-VLT 736 (766)
Q Consensus 660 ~vdv~e~~~~~~i~~dLP-G~-~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nG-vL~ 736 (766)
.+.|..+.+...|.+.|| |. +.+||+|++..+. |.|.-+.... +. --+.. .|...|+.+.-.=++++| .|.
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~-l~v~~~~~~~-~~--~~i~G--~L~~~V~~des~Wtled~~~l~ 79 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSS-IRVSVRDGGG-EK--VLMEG--EFTHKINTENSLWSLEPGKCVL 79 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCE-EEEEEecCCC-Cc--eEEeC--cccCcccCccceEEEeCCCEEE
Confidence 567889999999999999 54 6799999999996 8887642100 00 01111 578889998866678886 589
Q ss_pred EEEeccCC
Q 004229 737 VMAPRSIT 744 (766)
Q Consensus 737 I~lPK~~~ 744 (766)
|+|-|..+
T Consensus 80 I~L~K~~~ 87 (102)
T cd06495 80 LSLSKCSE 87 (102)
T ss_pred EEEEECCC
Confidence 99999753
No 48
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=80.51 E-value=0.83 Score=50.58 Aligned_cols=46 Identities=30% Similarity=0.764 Sum_probs=39.4
Q ss_pred CCcccccCCCcccCCCcccCCCCCceeecCHHHHhhhchhhhhhhchhhH
Q 004229 281 GLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYK 330 (766)
Q Consensus 281 ~~~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~~~Hk~eC~~l~ 330 (766)
+...|..|+.. +...|..|+.+.|||..+|..||+..|+..|..-.
T Consensus 135 ~~~~~~~~~~~----a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~ 180 (362)
T KOG2061|consen 135 GADLCGSCGCS----APAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPS 180 (362)
T ss_pred ccchhccCccc----CcccccccchhhhcCchhhcccccccccccccCcc
Confidence 34778888766 56889999999999999999999967999998764
No 49
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=75.20 E-value=1.4 Score=42.58 Aligned_cols=34 Identities=29% Similarity=0.658 Sum_probs=27.9
Q ss_pred CCcccccCCCcccCCCcccCCCCCceeecCHHHHhhhch
Q 004229 281 GLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWK 319 (766)
Q Consensus 281 ~~~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~ 319 (766)
....|++|+-. +...|-.|. ..|||..|...|-.
T Consensus 117 ~r~fCaVCG~~----S~ysC~~CG-~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 117 LRKFCAVCGYD----SKYSCVNCG-TKYCSVRCLKTHNE 150 (156)
T ss_pred cchhhhhcCCC----chhHHHhcC-Cceeechhhhhccc
Confidence 45689999955 578899997 67999999988764
No 50
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=75.12 E-value=2.1 Score=30.67 Aligned_cols=28 Identities=39% Similarity=0.949 Sum_probs=20.6
Q ss_pred cccccCCCcccCCCcccCCCCCceeecCHHHHh
Q 004229 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQK 315 (766)
Q Consensus 283 ~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~ 315 (766)
..|..|+.. +..+|++|... |||.+|-+
T Consensus 3 ~~C~vC~~~----~kY~Cp~C~~~-~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNP----AKYRCPRCGAR-YCSLACYK 30 (30)
T ss_dssp EEETSSSSE----ESEE-TTT--E-ESSHHHHH
T ss_pred CCCccCcCC----CEEECCCcCCc-eeCcEeEC
Confidence 479999983 67899999855 99999964
No 51
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=68.49 E-value=2.5 Score=32.89 Aligned_cols=31 Identities=23% Similarity=0.624 Sum_probs=23.9
Q ss_pred CcccccCCCcccCCCcccCCCCCceeecCHHHHhhhch
Q 004229 282 LRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWK 319 (766)
Q Consensus 282 ~~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~ 319 (766)
.+.|-.|.|... +......|||++|+..|+.
T Consensus 6 ~~yC~~Cdk~~~-------~~~~~~lYCSe~Cr~~D~~ 36 (43)
T PF12855_consen 6 NDYCIVCDKQID-------PPDDGSLYCSEECRLKDQE 36 (43)
T ss_pred hhHHHHhhcccc-------CCCCCccccCHHHHhHhhh
Confidence 367999988742 1345678999999999986
No 52
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=62.53 E-value=3.3 Score=44.88 Aligned_cols=36 Identities=33% Similarity=0.950 Sum_probs=28.1
Q ss_pred cccccCCCcccCCCcccCCCCCceeecCHHHHhhhchhhhhhhch
Q 004229 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECG 327 (766)
Q Consensus 283 ~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~~~Hk~eC~ 327 (766)
-.|+.|++.. .-.+|+||. ..|||-.|- + .|+..|.
T Consensus 8 ~~C~ic~vq~---~~YtCPRCn-~~YCsl~CY----r-~h~~~Cs 43 (383)
T KOG4317|consen 8 LACGICGVQK---REYTCPRCN-LLYCSLKCY----R-NHKHSCS 43 (383)
T ss_pred eecccccccc---ccccCCCCC-ccceeeeee----c-CCCccch
Confidence 5799999875 348999998 569999994 5 6777675
No 53
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=55.98 E-value=7.4 Score=46.64 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=35.9
Q ss_pred CCCCcccccCCCcccCCCcccCCCCC-------ceeecCHHHHhhhchhhhhhhchhh
Q 004229 279 NGGLRQCATCEKEVHGDQSVCCGRCR-------AVIYCSSTCQKQQWKDTHKSECGLY 329 (766)
Q Consensus 279 ~~~~~~C~~C~k~~~~~~l~~C~~C~-------~v~YCS~eCq~~dw~~~Hk~eC~~l 329 (766)
....+.|+.|..-+...+.+.|+.|. ..++||++|=+..|+ .||..=...
T Consensus 56 ~~~~~~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h~~~ 112 (606)
T PLN03144 56 IQSDRKVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWR-HHRVLHERA 112 (606)
T ss_pred cCCCccceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHH-HHHHHHHHh
Confidence 34445667776654434668898885 367999999999999 898765333
No 54
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=53.94 E-value=6.1 Score=38.23 Aligned_cols=33 Identities=39% Similarity=0.874 Sum_probs=25.6
Q ss_pred cccccCCCcccCCCcccCCCCCceeecCHHHHhhhchhhhhh
Q 004229 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKS 324 (766)
Q Consensus 283 ~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~~~Hk~ 324 (766)
..|..|.+.. .-.+|+.|. +-|||..| |+ .||.
T Consensus 6 ~tC~ic~e~~---~KYKCpkC~-vPYCSl~C----fK-iHk~ 38 (157)
T KOG2857|consen 6 TTCVICLESE---IKYKCPKCS-VPYCSLPC----FK-IHKS 38 (157)
T ss_pred eeehhhhcch---hhccCCCCC-Cccccchh----hh-hccC
Confidence 5788998764 357899997 67999999 55 5665
No 55
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=52.72 E-value=2.6 Score=29.83 Aligned_cols=26 Identities=15% Similarity=-0.005 Sum_probs=22.3
Q ss_pred ehhhhhHhhhhcCCcccccccccccc
Q 004229 100 MFRNENDGKRMTGSRETIRIPNVELL 125 (766)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (766)
.|-++|.+|..+|++++|++.|.++|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 46689999999999999999998884
No 56
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=52.47 E-value=10 Score=31.62 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=23.3
Q ss_pred CcccccCCCcccCCCcccCCCCCceeecCHHHHhhhchhhhhh
Q 004229 282 LRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKS 324 (766)
Q Consensus 282 ~~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~~~Hk~ 324 (766)
..+|-+|++.... .-.|||.+|++.-++ .++.
T Consensus 3 HkHC~~CG~~Ip~----------~~~fCS~~C~~~~~k-~qk~ 34 (59)
T PF09889_consen 3 HKHCPVCGKPIPP----------DESFCSPKCREEYRK-RQKR 34 (59)
T ss_pred CCcCCcCCCcCCc----------chhhhCHHHHHHHHH-HHHH
Confidence 4789999986431 256999999988776 4443
No 57
>PRK01343 zinc-binding protein; Provisional
Probab=52.19 E-value=13 Score=30.68 Aligned_cols=29 Identities=28% Similarity=0.678 Sum_probs=22.0
Q ss_pred CcccccCCCcccCCCcccCCCCCceeecCHHHHhhhch
Q 004229 282 LRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWK 319 (766)
Q Consensus 282 ~~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~ 319 (766)
...|..|++... . ...-|||+.|+..|..
T Consensus 9 ~~~CP~C~k~~~--~-------~~rPFCS~RC~~iDLg 37 (57)
T PRK01343 9 TRPCPECGKPST--R-------EAYPFCSERCRDIDLN 37 (57)
T ss_pred CCcCCCCCCcCc--C-------CCCcccCHHHhhhhHH
Confidence 367999998743 1 3568999999998864
No 58
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=47.26 E-value=1.1e+02 Score=29.62 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=49.7
Q ss_pred cceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC-cc------ccceEEEEEECCCCccccceEEEEeC
Q 004229 660 YVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES-TI------PGRSFMRKFRLPGMINIDEISAGYED 732 (766)
Q Consensus 660 ~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~-e~------~~~~F~R~~~LP~~vd~~~I~A~~~n 732 (766)
.+.|...++ ..+.++. +.+.++++++++. |.|+.+..+.. .. ....-.-.+.||++...++|+....+
T Consensus 67 ~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~-L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~~~ 141 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEY---NGKKPEISVEGGT-LTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKTSS 141 (166)
T ss_pred eEEEEEcCC-ccEEEEE---cCcEEEEEEcCCE-EEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEecc
Confidence 466666554 4445555 2227999999995 99988832210 00 12345567889999888899999999
Q ss_pred CEEEEE
Q 004229 733 GVLTVM 738 (766)
Q Consensus 733 GvL~I~ 738 (766)
|-++|.
T Consensus 142 G~i~i~ 147 (166)
T PF13349_consen 142 GDITIE 147 (166)
T ss_pred ccEEEE
Confidence 988875
No 59
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.03 E-value=8.1 Score=42.08 Aligned_cols=28 Identities=11% Similarity=-0.101 Sum_probs=26.3
Q ss_pred eeehhhhhHhhhhcCCcccccccccccc
Q 004229 98 IYMFRNENDGKRMTGSRETIRIPNVELL 125 (766)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (766)
.|.|.|++.+|..+|++++|+++|++.|
T Consensus 149 skay~RLG~A~~~~gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALGKYEEAIEAYKKAL 176 (304)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhh
Confidence 4789999999999999999999999996
No 60
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=44.89 E-value=4.2 Score=28.57 Aligned_cols=27 Identities=15% Similarity=-0.092 Sum_probs=23.8
Q ss_pred eehhhhhHhhhhcCCcccccccccccc
Q 004229 99 YMFRNENDGKRMTGSRETIRIPNVELL 125 (766)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (766)
++|-..|++|..+|+.+.|+..|.+++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778999999999999999998884
No 61
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=44.30 E-value=78 Score=32.02 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=58.1
Q ss_pred CccceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEE
Q 004229 658 ENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTV 737 (766)
Q Consensus 658 ~~~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I 737 (766)
.|.|-|.+..+-+.+++.++. ..+.+|.++.. +|+++++... ....+.-.+.|-..||+++.+-+-. +-...
T Consensus 7 ~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~-~l~fs~k~~~----d~~~~~~~ief~~eIdpe~sk~k~~-~r~if 78 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVED--AKDVHVNLEPS-KLTFSCKSGA----DNHKYENEIEFFDEIDPEKSKHKRT-SRSIF 78 (180)
T ss_pred CCcchhhhhcCeEEEEEEecc--Cccceeecccc-EEEEEeccCC----CceeeEEeeehhhhcCHhhcccccc-ceEEE
Confidence 457888888999999999875 45777888888 4999998642 2346667799999999999776665 55555
Q ss_pred EEeccC
Q 004229 738 MAPRSI 743 (766)
Q Consensus 738 ~lPK~~ 743 (766)
.++++.
T Consensus 79 ~i~~K~ 84 (180)
T KOG3158|consen 79 CILRKK 84 (180)
T ss_pred EEEEcc
Confidence 555443
No 62
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=44.05 E-value=40 Score=30.12 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=30.2
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEEEeccC
Q 004229 709 RSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSI 743 (766)
Q Consensus 709 ~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~~ 743 (766)
..|.-...|| +++.++|+-+++||.|+|+.-+..
T Consensus 8 ~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 8 SNVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 5678888999 799999999999999999998754
No 63
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=42.73 E-value=17 Score=39.13 Aligned_cols=83 Identities=16% Similarity=0.009 Sum_probs=64.8
Q ss_pred CccceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEE
Q 004229 658 ENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTV 737 (766)
Q Consensus 658 ~~~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I 737 (766)
.+++|+.++.+...|-+.-|-++.|+|++.+++|. |.|+-+-.. ..--|.....|-+.|+++...-..---++.|
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NT-L~I~~q~~~----~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~ 250 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNT-LSISYQPRR----LRLWNDITISLYKEVYPDIRSIKSFSKRVEV 250 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeecCCc-ceeeeeccc----cchHHHhhhhhhhhcCcchhhhhhcchhhee
Confidence 34688889999999999999999999999999995 999876422 2234556677888888888776654578888
Q ss_pred EEeccCCC
Q 004229 738 MAPRSITR 745 (766)
Q Consensus 738 ~lPK~~~~ 745 (766)
.|.|.+..
T Consensus 251 ~l~KV~~v 258 (368)
T COG5091 251 HLRKVEMV 258 (368)
T ss_pred hhhhhhhh
Confidence 88887644
No 64
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=41.75 E-value=8.3 Score=36.12 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=15.1
Q ss_pred CCCCceeeeccCCCCCccccc
Q 004229 229 AKGNDLVAVTVSHPPGQVYDE 249 (766)
Q Consensus 229 GRg~~~~~a~~d~~pG~vi~~ 249 (766)
|||+ +|+++|++|++|++
T Consensus 1 GrGl---~At~dI~~Ge~I~~ 18 (162)
T PF00856_consen 1 GRGL---FATRDIKAGEVILI 18 (162)
T ss_dssp SEEE---EESS-B-TTEEEEE
T ss_pred CEEE---EECccCCCCCEEEE
Confidence 8999 99999999999987
No 65
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=41.40 E-value=98 Score=33.13 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=71.4
Q ss_pred CccceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEE
Q 004229 658 ENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTV 737 (766)
Q Consensus 658 ~~~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I 737 (766)
.-+-||..++..++|.|..-|..++.-.|+.++.. |.|.-.... .-.+|...+.|=.-|++++..+.+..--++|
T Consensus 214 ~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~-l~V~ivf~~----gna~fd~d~kLwgvvnve~s~v~m~~tkVEI 288 (320)
T KOG1667|consen 214 KCRHDWHQTNGFVTINVYAKGALPETSNIEANGTT-LHVSIVFGF----GNASFDLDYKLWGVVNVEESSVVMGETKVEI 288 (320)
T ss_pred cchhhhhhcCCeEEEEEEeccCCcccceeeeCCeE-EEEEEEecC----CCceeeccceeeeeechhhceEEeecceEEE
Confidence 34789999999999999999999999999998884 877766521 2367888888988899999999999999999
Q ss_pred EEeccCCCC
Q 004229 738 MAPRSITRR 746 (766)
Q Consensus 738 ~lPK~~~~~ 746 (766)
+|+|.++..
T Consensus 289 sl~k~ep~s 297 (320)
T KOG1667|consen 289 SLKKAEPGS 297 (320)
T ss_pred EEeccCCCC
Confidence 999998764
No 66
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=40.95 E-value=61 Score=28.69 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=32.0
Q ss_pred cccceEEEEEECCCCccccceEEEEeCCEEEEEEeccC
Q 004229 706 IPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSI 743 (766)
Q Consensus 706 ~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~~ 743 (766)
.....|.-.+.|| +++.+.|+-++++|.|+|+--+..
T Consensus 4 e~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 4 EGKPMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred cCCceEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 3446889999999 799999999999999999997754
No 67
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=39.03 E-value=5.7 Score=27.72 Aligned_cols=26 Identities=12% Similarity=-0.104 Sum_probs=22.0
Q ss_pred ehhhhhHhhhhcCCcccccccccccc
Q 004229 100 MFRNENDGKRMTGSRETIRIPNVELL 125 (766)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (766)
.+-.+|.+|..+|++++|+..|.+++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45678999999999999999998884
No 68
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=37.74 E-value=22 Score=33.21 Aligned_cols=29 Identities=21% Similarity=0.642 Sum_probs=22.4
Q ss_pred CCCcccccCCCccc--CCCcccCCCCCceee
Q 004229 280 GGLRQCATCEKEVH--GDQSVCCGRCRAVIY 308 (766)
Q Consensus 280 ~~~~~C~~C~k~~~--~~~l~~C~~C~~v~Y 308 (766)
+.++.|..|+++.+ ++..+.|+.|...+-
T Consensus 7 GtKR~Cp~CG~kFYDLnk~PivCP~CG~~~~ 37 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYDLNKDPIVCPKCGTEFP 37 (108)
T ss_pred CCcccCCCCcchhccCCCCCccCCCCCCccC
Confidence 56789999999874 346788999987743
No 69
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=34.27 E-value=8.4 Score=28.08 Aligned_cols=25 Identities=20% Similarity=0.025 Sum_probs=21.1
Q ss_pred hhhhhHhhhhcCCcccccccccccc
Q 004229 101 FRNENDGKRMTGSRETIRIPNVELL 125 (766)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (766)
|...|++|..+|++++|+..|.+.|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578999999999999999998864
No 70
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=33.82 E-value=77 Score=28.07 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=30.9
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEEEeccCC
Q 004229 709 RSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSIT 744 (766)
Q Consensus 709 ~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~~~ 744 (766)
..|.-.+.|| +++.++|+-.++++.|+|+..+...
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~ 45 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADE 45 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 5788899999 6999999999999999999877544
No 71
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=32.98 E-value=27 Score=29.46 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=19.5
Q ss_pred cccccCCCcccCCCcccCCCCCceeecCHHHHhhhch
Q 004229 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWK 319 (766)
Q Consensus 283 ~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~ 319 (766)
..|..|++...-..- =..--+||+.|+..|..
T Consensus 7 v~CP~C~k~~~w~~~-----~~~rPFCS~RCk~IDLg 38 (62)
T PRK00418 7 VNCPTCGKPVEWGEI-----SPFRPFCSKRCQLIDLG 38 (62)
T ss_pred ccCCCCCCcccccCC-----CCcCCcccHHHHhhhHH
Confidence 568888776321000 01235899999998865
No 72
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=32.67 E-value=27 Score=31.13 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.0
Q ss_pred EEEEcCCCCCCCCceeeeccCCCCCccccc
Q 004229 220 VDVQWPPEMAKGNDLVAVTVSHPPGQVYDE 249 (766)
Q Consensus 220 v~~~~~~~~GRg~~~~~a~~d~~pG~vi~~ 249 (766)
+++..++.+|+|+ +|++++++|+++.+
T Consensus 2 ~~~~~~~~~G~gl---~a~~~i~~g~~i~~ 28 (116)
T smart00317 2 LEVFKSPGKGWGV---RATEDIPKGEFIGE 28 (116)
T ss_pred cEEEecCCCcEEE---EECCccCCCCEEEE
Confidence 4455567999999 99999999998887
No 73
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=32.63 E-value=85 Score=27.66 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=30.0
Q ss_pred cceEEEEEECCCCccccceEEEEeCCEEEEEEecc
Q 004229 708 GRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742 (766)
Q Consensus 708 ~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~ 742 (766)
...|.-.+.|| +++.++|+.+++||.|+|..-+.
T Consensus 6 ~d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 6 DDKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CCeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 36788899999 79999999999999999998764
No 74
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=32.09 E-value=27 Score=28.95 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=16.4
Q ss_pred cccccCCCcccCCCcccCCCCCceeecCHHHHhhhch
Q 004229 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWK 319 (766)
Q Consensus 283 ~~C~~C~k~~~~~~l~~C~~C~~v~YCS~eCq~~dw~ 319 (766)
..|..|++..... ..=..--+||+.|+..|..
T Consensus 3 v~CP~C~k~~~~~-----~~n~~rPFCS~RCk~iDLg 34 (57)
T PF03884_consen 3 VKCPICGKPVEWS-----PENPFRPFCSERCKLIDLG 34 (57)
T ss_dssp EE-TTT--EEE-S-----SSSS--SSSSHHHHHHHHS
T ss_pred ccCCCCCCeeccc-----CCCCcCCcccHhhcccCHH
Confidence 3677887754310 1112345899999998854
No 75
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=31.96 E-value=98 Score=32.55 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=55.8
Q ss_pred CeEEEEEEccCCCCCChhhHHHHHhhccCcccEEEEEEcCCCCCCCCCCccccCCceEEEEEeee--ehhhcccCCCCcE
Q 004229 468 KEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQIVMVGPEVPTNLSGTTSGISSRVRVNLLRGV--YQEEATYLPSPHV 545 (766)
Q Consensus 468 ~~lvIHIVGA~~E~~~l~~weeLlhLlP~i~~L~IvfIGPel~~~~~~~~~~~~~~l~i~~~~~l--Yhd~~~~~~~PDl 545 (766)
...+|-.+|.-.+...+...-+.+..++. ..++++++|.................+.+ .|. +.+....+..-|+
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~-~~~~l~i~G~~~~~~~~~~~~~~~~~v~~---~g~~~~~~~~~~~~~ad~ 265 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPR-GDIELVIVGNGLELEEESYELEGDPRVEF---LGAYPQEEIDDFYAEIDV 265 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHh-cCcEEEEEcCchhhhHHHHhhcCCCeEEE---eCCCCHHHHHHHHHhCCE
Confidence 45667778876333333333222222332 47889999976543221100111222322 222 3455556678898
Q ss_pred EEEecCCCCCCCChHHHHHHHhccCCcEEEeccC
Q 004229 546 IIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQS 579 (766)
Q Consensus 546 IVaFnaGf~~~~~W~~TL~~L~~~~cP~lfTsyS 579 (766)
+|... .. .+.+.-++..-...++|++.|...
T Consensus 266 ~i~ps--~~-~e~~~~~~~Ea~a~G~Pvi~~~~~ 296 (359)
T cd03823 266 LVVPS--IW-PENFPLVIREALAAGVPVIASDIG 296 (359)
T ss_pred EEEcC--cc-cCCCChHHHHHHHCCCCEEECCCC
Confidence 88642 11 245555555556789999998764
No 76
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=31.77 E-value=89 Score=27.64 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=29.4
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEEEecc
Q 004229 709 RSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742 (766)
Q Consensus 709 ~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~ 742 (766)
..|.-.+.|| +++.+.|+-+.++|.|+|+--+.
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 6788899999 79999999999999999998654
No 77
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=31.29 E-value=87 Score=27.45 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=29.7
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEEEecc
Q 004229 709 RSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742 (766)
Q Consensus 709 ~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~ 742 (766)
..|.-.+.|| +++.++|+-++.+|.|+|+.-+.
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 5788899999 89999999999999999998654
No 78
>PRK10743 heat shock protein IbpA; Provisional
Probab=30.11 E-value=90 Score=30.27 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=27.4
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEEEEeccC
Q 004229 710 SFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSI 743 (766)
Q Consensus 710 ~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~~ 743 (766)
.|.-...|| +++.++|+-++++|+|+|..-+..
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 455566788 899999999999999999987654
No 79
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=27.72 E-value=78 Score=27.96 Aligned_cols=30 Identities=40% Similarity=0.377 Sum_probs=26.2
Q ss_pred CeEEEEEEcCCCCCCCeEEEEECCeeEEEEE
Q 004229 668 ESHIFSADLPGVRKEEIKVEVEDSKYLIIRT 698 (766)
Q Consensus 668 ~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g 698 (766)
+.|.-.+.||.++.++++-++.+| +|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 467777899999999999999999 799974
No 80
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=27.15 E-value=1.2e+02 Score=26.69 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=30.7
Q ss_pred cceEEEEEECCCCccccceEEEEeCCEEEEEEeccC
Q 004229 708 GRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSI 743 (766)
Q Consensus 708 ~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~~ 743 (766)
...|.-.+.|| +++.+.|+-+.++|.|+|..-|..
T Consensus 7 ~~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 7 GDTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred CCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 35788899999 799999999999999999987643
No 81
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=27.14 E-value=1e+02 Score=26.71 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=31.2
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEEEeccCC
Q 004229 709 RSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSIT 744 (766)
Q Consensus 709 ~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~~~ 744 (766)
..|.-.+.|| ++..++|+-.++++.|+|..-+...
T Consensus 7 ~~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 7 EKFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eeEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 4799999999 6999999999999999999987653
No 82
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.98 E-value=1.3e+02 Score=29.63 Aligned_cols=33 Identities=18% Similarity=0.495 Sum_probs=24.7
Q ss_pred CCCcEEEEecCCCCCCCChHHHHHHHhccCCcEEEecc
Q 004229 541 PSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQ 578 (766)
Q Consensus 541 ~~PDlIVaFnaGf~~~~~W~~TL~~L~~~~cP~lfTsy 578 (766)
.+|||||+- .++.. .+.+..|.+.++|+++..+
T Consensus 68 l~PDlii~~-~~~~~----~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 68 LKPDLVILY-GGFQA----QTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred cCCCEEEEe-cCCCc----hhHHHHHHHcCCCEEEeCC
Confidence 699999984 33332 1578889999999988865
No 83
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=26.59 E-value=1.8e+02 Score=29.62 Aligned_cols=45 Identities=22% Similarity=0.433 Sum_probs=33.3
Q ss_pred CCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEEEe
Q 004229 681 KEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAP 740 (766)
Q Consensus 681 kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lP 740 (766)
|++++|+++++ .++|+|.. |+..+.|.-+ .++...+||-|.|+..
T Consensus 13 P~~V~v~i~~~-~v~VkGp~--------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGL-VVTVKGPK--------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECC-EEEEECCC--------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 68899999999 59999986 6677666532 3445578888888755
No 84
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=26.10 E-value=14 Score=23.52 Aligned_cols=26 Identities=12% Similarity=-0.044 Sum_probs=22.8
Q ss_pred ehhhhhHhhhhcCCcccccccccccc
Q 004229 100 MFRNENDGKRMTGSRETIRIPNVELL 125 (766)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (766)
.|-++|.++..+|+++.|...|.+++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46788999999999999999997774
No 85
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=24.96 E-value=50 Score=31.72 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCCcccccCCCccc--CCCcccCCCCCcee
Q 004229 280 GGLRQCATCEKEVH--GDQSVCCGRCRAVI 307 (766)
Q Consensus 280 ~~~~~C~~C~k~~~--~~~l~~C~~C~~v~ 307 (766)
..++.|..|+++.+ ++..+.|+.|...+
T Consensus 7 GtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 7 GTKRICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred CccccCCCcCccccccCCCCccCCCcCCcc
Confidence 45789999999874 34678899998763
No 86
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=24.30 E-value=1.3e+02 Score=29.51 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=27.0
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEEEEecc
Q 004229 710 SFMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742 (766)
Q Consensus 710 ~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~ 742 (766)
.|.-...|| +++.++|+-.+++|.|+|+.-+.
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~ 75 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPE 75 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 466677788 79999999999999999998754
No 87
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=23.82 E-value=14 Score=25.35 Aligned_cols=22 Identities=9% Similarity=-0.194 Sum_probs=20.2
Q ss_pred hhhHhhhhcCCccccccccccc
Q 004229 103 NENDGKRMTGSRETIRIPNVEL 124 (766)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~ 124 (766)
++|.||..+|+.++|+..|.++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHH
Confidence 6799999999999999999877
No 88
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=23.56 E-value=1.4e+02 Score=30.17 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=32.6
Q ss_pred CCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEEEe
Q 004229 681 KEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAP 740 (766)
Q Consensus 681 kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lP 740 (766)
|++++|+++++ .|+|+|.. |...+.| |..++ ...+|+.|.|...
T Consensus 12 P~~V~v~~~~~-~v~vkGp~--------G~l~~~~--~~~v~-----i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGN-VVTVKGPK--------GELSRTL--NPDVT-----VKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECC-EEEEECCC--------EEEEEEc--CCCeE-----EEEECCEEEEEcC
Confidence 58999999999 59999986 7777776 54443 3457887777744
No 89
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=23.42 E-value=1.6e+02 Score=26.10 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=30.7
Q ss_pred cceEEEEEECCCCccccceEEEEeCCEEEEEEeccC
Q 004229 708 GRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSI 743 (766)
Q Consensus 708 ~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~~ 743 (766)
...|.-.+.|| +++.++|+-++.++.|+|+.-+..
T Consensus 9 ~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 9 ADRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CCeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 36788899999 799999999999999999987653
No 90
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=23.20 E-value=2.4e+02 Score=28.41 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=32.9
Q ss_pred CCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEEEe
Q 004229 681 KEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAP 740 (766)
Q Consensus 681 kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lP 740 (766)
|++++|+++++ .++|+|.. |+..+.|. |.. |+...+++-|+|+.+
T Consensus 7 P~~V~v~i~~~-~i~vkGp~--------G~L~~~~~-~~~-----v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGN-IVTVKGPK--------GEVTRELW-YPG-----IEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCC-EEEEECCC--------eEEEEEEe-CCc-----EEEEEeCCEEEEEeC
Confidence 68899999999 59999986 66666553 333 444568888888854
No 91
>TIGR03277 methan_mark_9 putative methanogenesis marker domain 9. A gene for a protein that contains a copy of this domain, to date, is found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. A 69-amino acid core region of this 110-amino acid domain contains eight invariant Cys residues, including two copies of a motif [WFY]CCxxKPC. These motifs could be consistent with predicted metal-binding transcription factor as was suggested for the COG4008 family. Some members of this family have an additional N-terminal domain of about 250 amino acids from the nifR3 family of predicted TIM-barrel proteins.
Probab=22.98 E-value=57 Score=30.31 Aligned_cols=24 Identities=38% Similarity=0.826 Sum_probs=21.8
Q ss_pred HHHHHHHhhhCCCCCCCCCCccee
Q 004229 7 NLFGRFQDQFGSGPGLGPGSGTCL 30 (766)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~ 30 (766)
+=|-++.+.||.|--||-|.+||.
T Consensus 42 ~ef~~~K~ef~~~T~L~~G~~TCF 65 (109)
T TIGR03277 42 QEFVRIKEEFAKGTPLGQGENTCF 65 (109)
T ss_pred HHHHHHHHHHhccCcccCCCCccc
Confidence 458899999999999999999995
No 92
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=22.72 E-value=1.2e+02 Score=30.68 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=32.6
Q ss_pred EEEEEcC-CCCCCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECC
Q 004229 671 IFSADLP-GVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLP 718 (766)
Q Consensus 671 ~i~~dLP-G~~kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP 718 (766)
.=..-|| ||+++.|.=.+..+++|+|+|........ +.|.+++.
T Consensus 118 ~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~----~er~ipI~ 162 (173)
T KOG3591|consen 118 VRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQD----NERSIPIE 162 (173)
T ss_pred EEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCc----cceEEeEe
Confidence 3345688 99999999999977789999987654332 55666554
No 93
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=22.68 E-value=1.5e+02 Score=26.21 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=29.6
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEEEecc
Q 004229 709 RSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742 (766)
Q Consensus 709 ~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~ 742 (766)
..|.-.+.|| +++.++|+-+++++.|+|+.-+.
T Consensus 7 d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (87)
T cd06481 7 EGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKRE 39 (87)
T ss_pred ceEEEEEECC-CCChHHeEEEEECCEEEEEEEEe
Confidence 5788899999 79999999999999999998764
No 94
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=22.21 E-value=2.3e+02 Score=28.55 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=32.8
Q ss_pred CCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEEEe
Q 004229 681 KEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAP 740 (766)
Q Consensus 681 kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lP 740 (766)
|++|+|+++++ .|+|+|.. |+..+.| |..+ ....+|+.|.|...
T Consensus 11 P~~V~v~~~~~-~v~v~Gp~--------G~l~~~l--~~~i-----~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGN-VVTVKGPK--------GELSRTL--HPGV-----TVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCC-EEEEEcCC--------eEEEEEc--CCCe-----EEEEECCEEEEEec
Confidence 68899999999 59999986 6677666 5444 34468888888754
No 95
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=22.17 E-value=2.1e+02 Score=30.19 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=33.3
Q ss_pred CCCcEEEEecCCCCCCCChHHHHHHHhccCCcEEEecc-CHHHHHHHHHHHHH
Q 004229 541 PSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQ-SEISCANAKQVLRS 592 (766)
Q Consensus 541 ~~PDlIVaFnaGf~~~~~W~~TL~~L~~~~cP~lfTsy-Se~e~~~d~~~L~~ 592 (766)
-+||||++...+.. ..++..|.+.++|+++... +-.+...++..+-+
T Consensus 71 l~PDlVi~~~~~~~-----~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~ 118 (260)
T PRK03379 71 LKPDLVLAWRGGNA-----ERQVDQLASLGIKVMWVDATSIEQIANALRQLAP 118 (260)
T ss_pred cCCCEEEEecCCCc-----HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 58999998653221 4678889999999998864 55566666655544
No 96
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=22.05 E-value=2.1e+02 Score=29.44 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=34.1
Q ss_pred CCCeEEEEECCeeEEEEEEeeccCccccceEEEEEECCCCccccceEEEEeCCEEEEEEe
Q 004229 681 KEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAP 740 (766)
Q Consensus 681 kedI~V~v~~~~vL~I~g~~~~~~e~~~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lP 740 (766)
|++++|+++++ .++|+|.. |+..+.|.=+. ..|....+||.|.|+-+
T Consensus 13 P~~V~V~i~~~-~v~VkGp~--------G~L~~~~~~~~----~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSR-KVTVTGKY--------GELTRSFRHLP----VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECC-EEEEECCC--------ceEEEEecCCC----ceEEEEeCCCEEEEEeC
Confidence 68999999999 59999986 66776654321 24555678888887744
No 97
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=21.65 E-value=1.7e+02 Score=25.83 Aligned_cols=33 Identities=6% Similarity=0.153 Sum_probs=28.9
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEEEecc
Q 004229 709 RSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742 (766)
Q Consensus 709 ~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~ 742 (766)
..|.-...|| +++.++|+-++.++.|+|..-+.
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 5788889998 79999999999999999998543
No 98
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=21.55 E-value=3.3e+02 Score=28.19 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=53.8
Q ss_pred CeEEEEEEccCCCCCChhhH-HHHHhhccCcccEEEEEEcCCCCCCCCCC----ccccCCceEEEEEeeeehhhcccCCC
Q 004229 468 KEVILHYLGPEGELDWMPAF-AEIGHLLNGSGNIQIVMVGPEVPTNLSGT----TSGISSRVRVNLLRGVYQEEATYLPS 542 (766)
Q Consensus 468 ~~lvIHIVGA~~E~~~l~~w-eeLlhLlP~i~~L~IvfIGPel~~~~~~~----~~~~~~~l~i~~~~~lYhd~~~~~~~ 542 (766)
+.++|-.+|.-.....+... +.+..+......++++++|.......... .......+.+. |.+.+....+..
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~---g~~~~~~~~~~~ 263 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFL---GFRDDVPELLAA 263 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEe---eccccHHHHHHh
Confidence 34567777764222222222 11222221223688899997654322111 11122333332 224444455677
Q ss_pred CcEEEEecCCCCCCCChHHHHHHHhccCCcEEEeccC
Q 004229 543 PHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQS 579 (766)
Q Consensus 543 PDlIVaFnaGf~~~~~W~~TL~~L~~~~cP~lfTsyS 579 (766)
.|++|.. ... +.+.-++..-...++|++.|+..
T Consensus 264 adi~i~p--s~~--e~~~~~~~Ea~~~G~Pvi~s~~~ 296 (359)
T cd03808 264 ADVFVLP--SYR--EGLPRVLLEAMAMGRPVIATDVP 296 (359)
T ss_pred ccEEEec--Ccc--cCcchHHHHHHHcCCCEEEecCC
Confidence 8887754 222 45555666667889999998654
No 99
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=20.83 E-value=1.3e+02 Score=33.74 Aligned_cols=57 Identities=11% Similarity=0.231 Sum_probs=41.2
Q ss_pred cCCCCcEEEEecCCCCC-----------------CCChHHHHHHHhccCCcEEEeccCHHH-HHHHHHHHHHcCC
Q 004229 539 YLPSPHVIIALNCVLDR-----------------NGSWSGALDVIKTMGFPAFFTDQSEIS-CANAKQVLRSAGL 595 (766)
Q Consensus 539 ~~~~PDlIVaFnaGf~~-----------------~~~W~~TL~~L~~~~cP~lfTsySe~e-~~~d~~~L~~l~~ 595 (766)
.+..|=+++.|||.... .+.|.+.++...+++||+++.+++.-+ +..-....++.|+
T Consensus 157 ~~~~pv~l~s~dpevmkaaLev~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~~dl~~lk~la~~~~~~Gi 231 (467)
T COG1456 157 EAGLPVILCSFDPEVMKAALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFNDLDDLKNLAVTYAQAGI 231 (467)
T ss_pred hcCCcEEEEeCCHHHHHHHHHHhhccCceeeecccccHHHHHHHHhhcCCcEEEeccCCHHHHHHHHHHHHHcCC
Confidence 44578888888887331 479999999999999999999975544 4443444555543
No 100
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.62 E-value=2.5e+02 Score=23.26 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=30.5
Q ss_pred ceEE-EcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEe
Q 004229 661 VHWT-QTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEA 700 (766)
Q Consensus 661 vdv~-e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~ 700 (766)
+.+. -..+.|.|++..||+....-+|+|..++...|+.+-
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 3444 346789999999999999889999876557766553
No 101
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=20.37 E-value=2.2e+02 Score=25.32 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=28.9
Q ss_pred cceEEEEEECCCCccccceEEEEeCCEEEEEEecc
Q 004229 708 GRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742 (766)
Q Consensus 708 ~~~F~R~~~LP~~vd~~~I~A~~~nGvL~I~lPK~ 742 (766)
...|.-.+.|| +++.++|+-+++++.|+|+.-+.
T Consensus 6 ~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 6 EDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 36788999999 79999999999999999998877
No 102
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=20.17 E-value=2.1e+02 Score=25.18 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=28.7
Q ss_pred cceEEEEEECCCCccccceEEEEeCC-EEEEEEecc
Q 004229 708 GRSFMRKFRLPGMINIDEISAGYEDG-VLTVMAPRS 742 (766)
Q Consensus 708 ~~~F~R~~~LP~~vd~~~I~A~~~nG-vL~I~lPK~ 742 (766)
...|.-.+.|| +++.++|+-.+.+| +|+|+--+.
T Consensus 8 ~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~ 42 (92)
T cd06472 8 PEAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERK 42 (92)
T ss_pred CCeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEec
Confidence 35788899999 68999999999865 999998764
Done!