RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 004229
(766 letters)
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 90.8 bits (226), Expect = 4e-22
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 10/91 (10%)
Query: 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGR----------S 710
V W +TPE+H+F AD+PGV+KE++KVEVED + L I E E G
Sbjct: 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGR 61
Query: 711 FMRKFRLPGMINIDEISAGYEDGVLTVMAPR 741
F+R+FRLP + DE+ A E+GVLTV P+
Sbjct: 62 FVRRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 83.4 bits (207), Expect = 1e-19
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIR--TEAVDESTIPGRSFMRKFRLPGM 720
W QT + + + DLPGV+KE+IKVEVED L I E +E F R F LP
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFELPED 59
Query: 721 INIDEISAGYEDGVLTVMAPR 741
++ ++ A E+GVL + P+
Sbjct: 60 VDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 82.2 bits (204), Expect = 4e-19
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLII---RTEAVDEST------IPGRSFMR 713
+T ++++ ADLPG +KE+IKVEVED L I R E +E SF R
Sbjct: 2 VYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEENYLRRERSYGSFSR 60
Query: 714 KFRLPGMINIDEISAGYEDGVLTVMAPR 741
FRLP ++ D+I A E+GVLT+ P+
Sbjct: 61 SFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 82.6 bits (205), Expect = 4e-19
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDE-------STIPGRSFMRKF 715
+ ++ + D+PG + EE+KV+VED++ L+ +E S RSF RKF
Sbjct: 2 IKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRKF 61
Query: 716 RLPGMINIDEISAGYEDGVLTVMAPR 741
LP + D++ A +DGVLTV P+
Sbjct: 62 VLPENADPDKVKASLKDGVLTVTVPK 87
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 70.1 bits (172), Expect = 4e-14
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 665 QTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPG----------RSFMRK 714
+T + + +A+LPGV KE+I++ VE + L IR E +E F R
Sbjct: 47 ETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERT 105
Query: 715 FRLPGMINIDEISAGYEDGVLTVMAPRSI 743
FRLP ++ + I A Y++G+LTV P++
Sbjct: 106 FRLPEKVDPEVIKAKYKNGLLTVTLPKAE 134
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 64.0 bits (157), Expect = 1e-12
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 674 ADLPGVRKEEIKVEVEDSKYLII---RTEAVDESTIPGR---------SFMRKFRLPGMI 721
ADLPG +KE+IK++ +D YL I R E+ DE G SF R F LP +
Sbjct: 16 ADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLPN-V 73
Query: 722 NIDEISAGYEDGVLTVMAP 740
+ +EI A YE+GVL + P
Sbjct: 74 DEEEIKAKYENGVLKITLP 92
Score = 29.8 bits (68), Expect = 1.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 717 LPGMINIDEISAGYEDGVLTVMAPRS 742
LPG ++I Y+DG LT+ A R
Sbjct: 18 LPGF-KKEDIKLDYKDGYLTISAKRD 42
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger.
Length = 39
Score = 55.1 bits (133), Expect = 4e-10
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 285 CATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC 326
CA C KE C RC++V YCS CQK W HK EC
Sbjct: 1 CAVCGKEALKLLR--CSRCKSVYYCSKECQKADWP-YHKKEC 39
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 43.7 bits (104), Expect = 1e-05
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 675 DLPGVRKEEIKVEVEDSKYLII---RTEAVDESTIPGRSFMRKFRLPGMINIDEISAGY- 730
D+ G + EE+KV+V D L++ E DE R F R+++LP ++ D +++
Sbjct: 14 DVKGFKPEELKVKVSD-NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLS 72
Query: 731 EDGVLTVMAPR 741
DGVLT+ AP+
Sbjct: 73 SDGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 39.4 bits (93), Expect = 4e-04
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 676 LPGVRKEEIKVEVEDSKYLIIRTEAVDEST---------IPGRSFMRKFRLPGMINIDEI 726
+ G ++++++EVE+++ L + + DE I R+F R F L + +
Sbjct: 19 VAGFSEDDLEIEVENNQ-LTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK-- 75
Query: 727 SAGYEDGVLTV 737
A E+G+LT+
Sbjct: 76 GAELENGLLTI 86
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2.
Length = 86
Score = 39.4 bits (92), Expect = 5e-04
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 664 TQTPESHIFSADLPGVRKEEIKVEVEDSKYLII--RTEAVDESTIPGRSFMRKFRLPGMI 721
QT + S D+ EE+ V+ +D I E DE R F RK+ LP +
Sbjct: 6 RQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGV 65
Query: 722 NIDEISAGYE-DGVLTVMAP 740
+ +++ DG+LTV AP
Sbjct: 66 DPTAVTSSLSPDGILTVEAP 85
>gnl|CDD|107246 cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crystallin domain found
in the small heat shock protein (sHsp) alphaB-crystallin
(HspB5, 20kDa). sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4
does not belong to this group. HspB5 shows increased
synthesis in response to stress. HspB5 is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. Its functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Length = 84
Score = 35.0 bits (80), Expect = 0.019
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 675 DLPGVRKEEIKVEVEDSKYLI--IRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYE- 731
D+ EE+KV+V I E DE R F RK+R+P ++ I++
Sbjct: 14 DVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSP 73
Query: 732 DGVLTVMAPR 741
DGVLTV PR
Sbjct: 74 DGVLTVCGPR 83
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in
alphaA-crystallin (HspB4), alphaB-crystallin (HspB5),
and the small heat shock protein (sHsp) HspB6, also
known as Hsp20. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 on the other hand is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. HspB5's functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Mutations in HspB4 have been associated with Autosomal
Dominant Congenital Cataract (ADCC). HspB6 (Hsp20) is
ubiquitous and is involved in diverse functions
including regulation of glucose transport and
contraction of smooth muscle, in platelet aggregation,
in cardioprotection, and in the prevention of apoptosis.
It interacts with the universal scaffolding and adaptor
protein 14-3-3, and also with the proapoptotic protein
Bax.
Length = 83
Score = 34.7 bits (80), Expect = 0.021
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 682 EEIKVEVEDSKYLI--IRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYE-DGVLTVM 738
EE+ V+V I E DE R F R++RLP ++ I++ DGVLT+
Sbjct: 21 EELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTIS 80
Query: 739 APR 741
PR
Sbjct: 81 GPR 83
>gnl|CDD|107232 cd06477, ACD_HspB3_Like, Alpha crystallin domain (ACD) found in
mammalian HspB3, also known as heat-shock protein
27-like protein (HSPL27, 17-kDa) and similar proteins.
sHsps are molecular chaperones that suppress protein
aggregation and protect against cell stress, and are
generally active as large oligomers consisting of
multiple subunits. HspB3 is expressed in adult skeletal
muscle, smooth muscle, and heart, and in several other
fetal tissues. In muscle cells HspB3 forms an
oligomeric 150 kDa complex with myotonic dystrophy
protein kinase-binding protein (MKBP/ HspB2), this
complex may comprise one of two independent muscle-cell
specific chaperone systems. The expression of HspB3 is
induced during muscle differentiation controlled by the
myogenic factor MyoD. HspB3 may also interact with Hsp22
(HspB8).
Length = 83
Score = 33.6 bits (77), Expect = 0.044
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 675 DLPGVRKEEIKVEVEDSKYLIIRTE---AVDESTIPGRSFMRKFRLPGMINIDEISAGY- 730
D+ R E+I ++V + +L+I+ + +DE RSF R+++LP + ++SA
Sbjct: 14 DVVQFRPEDIIIQVFEG-WLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLC 72
Query: 731 EDGVLTV 737
DG+L V
Sbjct: 73 HDGILVV 79
>gnl|CDD|205110 pfam12855, Ecl1, Life-span regulatory factor. This family is
involved in the chronological life-span of S.
cerevisiae. Over-expression leads to an extended
viability of wild-type strains, indicating a role in
regulation.
Length = 40
Score = 32.3 bits (74), Expect = 0.053
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 12/40 (30%)
Query: 285 CATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKS 324
C C+K + D S +YCS C++ KD KS
Sbjct: 8 CIVCDKLIPSDSS---------LYCSEECKR---KDETKS 35
>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain found
in the small heat shock protein (sHsp) alphaA-crystallin
(HspB4, 20kDa). sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 does not belong to this group. Mutations
inHspB4 have been associated with Autosomal Dominant
Congenital Cataract (ADCC). The chaperone-like functions
of HspB4 are considered important for maintaining lens
transparency and preventing cataract.
Length = 86
Score = 30.0 bits (67), Expect = 1.2
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 682 EEIKVEVEDSKYLIIR---TEAVDESTIPGRSFMRKFRLPGMINIDEISAGYE-DGVLTV 737
E++ V+V D Y+ I +E D+ R F R++RLP ++ I+ DG+LT
Sbjct: 24 EDLTVKVLDD-YVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82
Query: 738 MAPR 741
P+
Sbjct: 83 SGPK 86
>gnl|CDD|222400 pfam13824, zf-Mss51, Zinc-finger of mitochondrial splicing
suppressor 51. Mss51 regulates the expression of
cytochrome oxidase, so this domain is probably
DNA-binding.
Length = 55
Score = 27.7 bits (62), Expect = 2.8
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 285 CATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKD---THKSECGLYKAMMEREEEL 339
C C+ ++ + C C +CS ++ W+D H+ C + + E E +L
Sbjct: 2 CPHCKHDLPARVNFECPDCGIPTHCS----EEHWEDDYEEHRELCETLRQVNEDEHDL 55
>gnl|CDD|133910 PHA00540, PHA00540, hypothetical protein.
Length = 715
Score = 30.4 bits (68), Expect = 4.0
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 71 GKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNENDGKRMTGSRETIRIPNVELLRVTFE 130
G+ +DW++ +Q +F+ D+ +Y EN + GS + V R+ F+
Sbjct: 261 GEITDWNSYQQNR-VKEFI-----DLSLYSVLQENIRVQQGGSADYENPNKVGTKRIIFD 314
Query: 131 TES---LMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLEELRFVYAFM 187
E+ L + KK I + L +D SG L N ++L F ++FM
Sbjct: 315 FETVDELDVKNIKKAIYRMIL---------TVDEANLIISGSLELNNINNDDLSFNFSFM 365
Query: 188 R 188
R
Sbjct: 366 R 366
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger. The plant homeodomain (PHD)
finger is a C4HC3 zinc-finger-like motif found in
nuclear proteins thought to be involved in epigenetics
and chromatin-mediated transcriptional regulation. The
PHD finger binds two zinc ions using the so-called
'cross-brace' motif and is thus structurally related to
the RING finger and the FYVE finger. It is not yet known
if PHD fingers have a common molecular function. Several
reports suggest that it can function as a
protein-protein interacton domain and it was recently
demonstrated that the PHD finger of p300 can cooperate
with the adjacent BROMO domain in nucleosome binding in
vitro. Other reports suggesting that the PHD finger is a
ubiquitin ligase have been refuted as these domains were
RING fingers misidentified as PHD fingers.
Length = 47
Score = 27.2 bits (60), Expect = 4.7
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 285 CATCEKEVHGDQSVCCGRCRAV--IYC 309
C+ C K G + + C C C
Sbjct: 2 CSVCGKPDDGGELLQCDGCDRWYHQTC 28
>gnl|CDD|217421 pfam03200, Glyco_hydro_63, Mannosyl oligosaccharide glucosidase.
This is a family of eukaryotic enzymes belonging to
glycosyl hydrolase family 63. They catalyze the specific
cleavage of the non-reducing terminal glucose residue
from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide
glucosidase EC:3.2.1.106 is the first enzyme in the
N-linked oligosaccharide processing pathway.
Length = 775
Score = 29.7 bits (67), Expect = 7.8
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 402 PQDAPYHNHIRDGISSPILLSGWSEYYNLRSLPLSSP 438
P D+P + D I P L WS+Y LRSL SSP
Sbjct: 641 PPDSPKLEKLLDLIRDPEEL--WSDY-GLRSLSKSSP 674
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.429
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,960,267
Number of extensions: 3949594
Number of successful extensions: 2993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2980
Number of HSP's successfully gapped: 27
Length of query: 766
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 662
Effective length of database: 6,324,786
Effective search space: 4187008332
Effective search space used: 4187008332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.3 bits)