RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004229
(766 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 95.5 bits (238), Expect = 3e-23
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 10/92 (10%)
Query: 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGR----------S 710
+ W +TPE+H+F ADLPGV+KEE+KVEVED L++ E E
Sbjct: 46 MDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGK 105
Query: 711 FMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742
F+R+FRL ++E+ AG E+GVLTV P++
Sbjct: 106 FVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA 137
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 89.5 bits (223), Expect = 1e-21
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGR----------SFM 712
+ + ADLPG+ +I+V+++ L IR E ES+ SF
Sbjct: 9 IKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKSESSTETERFSRIERRYGSFH 67
Query: 713 RKFRLPGMINIDEISAGYEDGVLTVMAPRS 742
R+F LP + D I+A +GVL + P+
Sbjct: 68 RRFALPDSADADGITAAGRNGVLEIRIPKR 97
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 88.8 bits (221), Expect = 3e-21
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGR------SFMRK 714
V + + ADL G KE+IK V LII E +
Sbjct: 27 VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKV 86
Query: 715 FRLPGMINIDE-ISAGYEDGVLTVMAPRS 742
RLP + D IS YE+GVLT+ P +
Sbjct: 87 IRLPYNVAKDAEISGKYENGVLTIRIPIA 115
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 82.5 bits (204), Expect = 2e-18
Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 40/177 (22%)
Query: 604 NPFRSP--------VRNHSPSSNLPSYSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPI 655
+PF S + + S A+E P
Sbjct: 5 DPFDSLFERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMP------ 58
Query: 656 IPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGR------ 709
+ + + A LPGV KE+I + L IR +
Sbjct: 59 -----ISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSE 112
Query: 710 -----SFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSITRRGLLIDPAAVPERLEV 761
R +LP + + SA +E+GVL+V+ P++ +++ + + +
Sbjct: 113 IPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKA---------ESSIKKGINI 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 81.6 bits (201), Expect = 7e-16
Identities = 101/625 (16%), Positives = 165/625 (26%), Gaps = 237/625 (37%)
Query: 5 LKNLFGRFQDQFGSG-------PGLGPGSGTCLMKVEGIAPNCIKSIYRAAAALYRTEPW 57
L F++ + G L + T L+K + + IK+ A R P+
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL----IKNYITARIMAKR--PF 137
Query: 58 KRLHPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNENDGKRMTGSRETI 117
+ LF + Q A F GG G+ Y F E
Sbjct: 138 DKKSNSALF------RAVGEGNAQLV--AIF-GGQ-GNTDDY-FE-E------------- 172
Query: 118 RIPNVELLRVTFET-----ESLMFPSNKKMIRSLSLEASGTDRFP-VIDVTRCTTSGELW 171
LR ++T L+ S + + + F +++ W
Sbjct: 173 -------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-------W 218
Query: 172 FRNP--TLEELRFVYAFMRAISLVHPLLQVDTDGGPKWSRLLHFEPFIETVDVQWPPEMA 229
NP T ++ + IS PL+ V +L H+ + + P E+
Sbjct: 219 LENPSNTPDKDYLLSI---PISC--PLIGV--------IQLAHYVVTAKLLGFT-PGELR 264
Query: 230 K--------GNDLV-AVTVSHPP-GQVYDERASST----------SH-STPTKYAEPTKE 268
LV AV ++ + + + + P P+
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS-- 322
Query: 269 ETFADVRMNSNG---------GLRQCATCEKEV-----HGDQ------SVCCGRCRAVIY 308
D N+ G L Q + V H S+ G V+
Sbjct: 323 -ILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV- 379
Query: 309 CSSTCQKQQWKDTHKSECG----LYKAMMEREEELAMKIFMFPCSADQPCKWLEALGVHQ 364
G LY + + A P DQ +
Sbjct: 380 -----------------SGPPQSLYGLNLTLRKAKA------PSGLDQ----------SR 406
Query: 365 KGMWRRKCSCYSHCPFGLLPVKGGLWDLWGGLDDEEYPQDAPYHNHIRDGISSPILLSGW 424
RK +S+ F LPV +P+H+H+ S I
Sbjct: 407 IPFSERKLK-FSNR-F--LPV------------------ASPFHSHLLVPASDLINKDLV 444
Query: 425 SEYYNLRSLPLSSPVADILSHPLTVYYILTA--LSISSKNRLLKGKEVILHYLGPEGELD 482
+ + + P VY L + S + + + I+ P +
Sbjct: 445 KNNVSFNAKDIQIP----------VYDTFDGSDLRVLSGSISERIVDCIIR--LP---VK 489
Query: 483 WMPA-FAEIGHLLNGSGNIQIVMVGPEVPTNLSGTTSGISSRVRVNLL-RGVYQEEATYL 540
W + H I+ GP G SG+ N GV
Sbjct: 490 WETTTQFKATH---------ILDFGP-------GGASGLGVLTHRNKDGTGV-------- 525
Query: 541 PSPHVIIALNCVLDRNGSWSGALDV 565
VI+A G LD+
Sbjct: 526 ---RVIVA------------GTLDI 535
Score = 76.2 bits (187), Expect = 3e-14
Identities = 101/594 (17%), Positives = 170/594 (28%), Gaps = 194/594 (32%)
Query: 187 MRAISLVHPLLQ----VDTDGGPKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVTVSHP 242
R ++L H L+ V T S+L E F + L T
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQ--EQFNKI--------------LPEPT---- 45
Query: 243 PGQVYDERASSTSHSTPTKY-------AEPTKEETFADVRMNSNGGLRQCATCEKEVH-- 293
G D+ ++ + K+ EP+K F V C ++H
Sbjct: 46 EGFAADDEPTTPAELV-GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 294 -----GDQSVCCGRCRAVI---YCSSTCQKQQWKDTHKSECGLYKAMMERE--------- 336
+ + + +I + K+ + S L++A+ E
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS--ALFRAVGEGNAQLVAIFGG 162
Query: 337 --------EELAMKIF-MFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFGLLPVKG 387
EEL ++ + ++ + R GL
Sbjct: 163 QGNTDDYFEELR-DLYQTYHVLVGD---LIKFSAETLSELIRTTLDAEKVFTQGL----- 213
Query: 388 GLWDL--WGGLDDEEYPQDAPYHNHIRDGISSP-ILLSGWSEYYN-LRSLPLSSP--VAD 441
++ W L++ D Y I IS P I + + Y + L + P +
Sbjct: 214 ---NILEW--LENPSNTPDKDYLLSI--PISCPLIGVIQLAHYVVTAKLLGFT-PGELRS 265
Query: 442 ILSHPLTVYY-ILTALSISS--------KN--RLLKGKEVILHYLGPEGELDWMPAFAEI 490
L ++TA++I+ + + + +L ++G + P +
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT----VLFFIGVRC-YEAYPNTS-- 318
Query: 491 GHLLNGSGNIQIVMVGPEVPT---NLSGTT-SGISSRVR-VNLLRGVYQEEATYLP-SPH 544
L S + VP+ ++S T + V N ++LP
Sbjct: 319 ---LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN----------SHLPAGKQ 365
Query: 545 VIIAL-----NCVLDRNGSWSG---ALDVIKTMGFPAFF--------TDQSEISCANAKQ 588
V I+L N V+ SG +L G DQS I + K
Sbjct: 366 VEISLVNGAKNLVV------SGPPQSL-----YGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 589 VLRSAGLHITHPVTPNPFRSPVRNHSP---------SSNLPSYSNGFVFGAMEFPTY--- 636
+ L PV PF HS + +L + F ++ P Y
Sbjct: 415 KFSNRFL----PVAS-PF------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 637 ------ELSPWNYILT--APAIFSYPIIPENYVHWTQT---PESHIFSADL-PG 678
LS I I P V W T +HI D PG
Sbjct: 464 DGSDLRVLS--GSISERIVDCIIRLP------VKWETTTQFKATHIL--DFGPG 507
Score = 40.8 bits (95), Expect = 0.002
Identities = 37/219 (16%), Positives = 57/219 (26%), Gaps = 80/219 (36%)
Query: 569 MGFPAFFTDQSEISCANAKQVLRSA--------GLHITHPVTPNPFRSPVRNHSPSSNLP 620
MG + S+ A+ V A G I V NP +
Sbjct: 1631 MGMDLY--KTSKA----AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK-R 1683
Query: 621 SYSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVR 680
N + AM +E + + I E + S+ F ++
Sbjct: 1684 IREN---YSAM---IFETIVDGKLK------TEKIFKE----INEHSTSYTFRSE----- 1722
Query: 681 KEEIKVEVEDSKYLIIRTEAVDESTIP-----GRSFMRKFRLPGMINIDEISAG-----Y 730
K + T + T P ++ + G+I D AG Y
Sbjct: 1723 KGLLS-----------AT----QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 731 ------------EDGVLTVMAPRSITRRGLLIDPAAVPE 757
E V V RG+ + AVP
Sbjct: 1768 AALASLADVMSIESLVEVV------FYRGMTMQ-VAVPR 1799
Score = 38.9 bits (90), Expect = 0.008
Identities = 60/296 (20%), Positives = 86/296 (29%), Gaps = 108/296 (36%)
Query: 51 LYRTEP-----WKR--LHPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGG-DIGI-YM- 100
LY+T W R H +G + P GG+ G I Y
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIV----INNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 101 --FRNENDGKRMTGSRETIRIPNVELLRVTFETESLMFPSNKKMIRSLSLEASGTDRF-- 156
F DGK T E I + + S F S K + LS T +F
Sbjct: 1691 MIFETIVDGKLKT---EKI------FKEINEHSTSYTFRSEKGL---LSA----T-QFTQ 1733
Query: 157 PVIDVTRCTTSGELWFRNPTLEELR---------FV-------YAFMRAISLVHPLLQVD 200
P + + E+L+ YA A L
Sbjct: 1734 PAL----TLMEKAAF------EDLKSKGLIPADATFAGHSLGEYA---A--LAS------ 1772
Query: 201 TDGGPKWSRLLHFEPFIETV-------DVQWPP-EMAKGN-DLVAVTVSHPPGQVYDERA 251
+ ++ E +E V V P E+ + N ++A+ PG+V A
Sbjct: 1773 ------LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN----PGRV----A 1818
Query: 252 SSTSHSTPTKYAEPTKEETFADVRM-NSNGGLRQCATCEKEVHGDQSVCCGRCRAV 306
+S S E + T V + N N E Q V G RA+
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYN--------VE----NQQYVAAGDLRAL 1862
Score = 35.4 bits (81), Expect = 0.090
Identities = 49/231 (21%), Positives = 74/231 (32%), Gaps = 83/231 (35%)
Query: 361 GVHQKGM--------------WRRKCSCYSHC-PFGLL------PVKGGLWDLWGGLDD- 398
G ++GM W R + + F +L PV L +GG
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN--LTIHFGGEKGK 1682
Query: 399 ---EEYPQDAPYHNHIRDG-ISSPILLSGWSEYYNLRSLPLSSPVADILSHPLTVYYILT 454
E Y A I DG + + + +E + S S +LS T + T
Sbjct: 1683 RIRENY--SAMIFETIVDGKLKTEKIFKEINE--HSTSYTFRSE-KGLLS--ATQF---T 1732
Query: 455 --ALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGH-------LLNGSGNIQIVMV 505
AL++ K L +G + FA GH L + + VM
Sbjct: 1733 QPALTLMEK--------AAFEDLKSKGLIPADATFA--GHSLGEYAALASLAD----VM- 1777
Query: 506 GPEVPTNLSGTTSGISSRVRVNLLRGVYQEEATYLP------SPHVIIALN 550
I S V V RG+ + A +P S + +IA+N
Sbjct: 1778 -------------SIESLVEVVFYRGMTMQVA--VPRDELGRSNYGMIAIN 1813
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 72.0 bits (177), Expect = 8e-16
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 664 TQTPESHIFSADLPGVRKEEIKVEVEDSKYLII---RTEAVDESTIPGRSFMRKFRLPGM 720
+ T + S D+ +E+ V+ +D + I DE R F RK+ LP
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKD-GVVEITGKHAARQDEHGYISRCFTRKYTLPPG 61
Query: 721 INIDEISAGY-EDGVLTVMAPR 741
++ ++S+ +G LTV AP
Sbjct: 62 VDPTQVSSSLSPEGTLTVEAPM 83
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 71.3 bits (175), Expect = 2e-15
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 664 TQTPESHIFSADLPGVRKEEIKVEVEDSKYLII---RTEAVDESTIPGRSFMRKFRLPGM 720
P D+ EEI V+V ++ + E DE R F R++RLP
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHARHEERPDEHGFIAREFHRRYRLPPG 65
Query: 721 INIDEISAG-YEDGVLTVMAPRSITRRGLLIDPAA 754
++ +++ +GVL++ A + + L PAA
Sbjct: 66 VDPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 65.5 bits (160), Expect = 2e-13
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 672 FSADLPGVRKEEIKVEVEDSKYLII---RTEAVDESTIPGRSFMRKFRLPGMINIDEISA 728
+ D+ EE+KV+V + + E DE R F RK+R+P ++ I++
Sbjct: 10 VNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITS 68
Query: 729 G-YEDGVLTVMAPRSITRRGLLIDPAAVPER 758
DGVLTV PR + PER
Sbjct: 69 SMSSDGVLTVNGPRK---------QVSGPER 90
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 66.0 bits (161), Expect = 2e-13
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 664 TQTPESHIFSADLPGVRKEEIKVEVEDSKYLII--RTEAVDESTIPGRSFMRKFRLPGMI 721
+ + D+ E++ V+V++ I E D+ R F R++RLP +
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNV 67
Query: 722 NIDEISAGY-EDGVLTVMAPRSITRRGLLIDPAAVPER 758
+ +S DG+LT P+ + A ER
Sbjct: 68 DQSALSCSLSADGMLTFSGPKIPSGV-----DAGHSER 100
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 66.5 bits (162), Expect = 6e-13
Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 7/145 (4%)
Query: 603 PNP-FRSPVRNHSPSSNLPSYSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPIIPEN-Y 660
+P R P S L G + S + L P+ P +
Sbjct: 6 HHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGL 65
Query: 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLII---RTEAVDESTIPGRSFMRKFRL 717
+ + D+ EE+KV+V + + E DE R F RK+R+
Sbjct: 66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRI 124
Query: 718 PGMINIDEISAGY-EDGVLTVMAPR 741
P ++ I++ DGVLTV PR
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPR 149
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 59.6 bits (144), Expect = 1e-11
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMME 334
C C ++ S C C YC S CQ + W+ H CG +
Sbjct: 18 ESCWNCGRK----ASETCSGCNTARYCGSFCQHKDWE-KHHHICGQTLQAQQ 64
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding
protein; NMR {Homo sapiens}
Length = 60
Score = 59.6 bits (144), Expect = 1e-11
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 277 NSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMME 334
++ C C ++ S C C YC S CQ + W+ H CG +
Sbjct: 8 PNSDSSESCWNCGRK----ASETCSGCNTARYCGSFCQHKDWE-KHHHICGQTLQAQQ 60
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Length = 52
Score = 59.1 bits (143), Expect = 1e-11
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECG 327
+ C C +E C C V YCS+ CQ++ WK H+ CG
Sbjct: 10 QSCVNCGRE----AMSECTGCHKVNYCSTFCQRKDWK-DHQHICG 49
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 60
Score = 58.8 bits (142), Expect = 2e-11
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKA 331
C C ++ S C C YC S CQ + W+ H C +
Sbjct: 16 ESCWNCGRK----ASETCSGCNTARYCGSFCQHKDWE-KHHHICSGPSS 59
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 57.7 bits (139), Expect = 7e-11
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC 326
+CA C E S C RC+ YC CQ + W+ H C
Sbjct: 16 PRCAYCSAE----ASKRCSRCQNEWYCCRECQVKHWE-KHGKTC 54
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 58.7 bits (141), Expect = 2e-09
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 651 FSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLI-----IRTEAVDEST 705
E + + H+ P +++KV + +K + + + S
Sbjct: 217 VKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASH 276
Query: 706 IPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPR 741
R F + F P +++ + A DG++ V AP
Sbjct: 277 SEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEAPL 312
Score = 57.1 bits (137), Expect = 8e-09
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 673 SADLPGVRKEEIKVEVEDSKYLIIRT--EAVDESTIPGRSFMRKFRLPGMINIDEISAGY 730
++ + EEI ++ + L++R S R LP ++ + I A
Sbjct: 117 YFNVKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATI 175
Query: 731 -EDGVLTVMAPR 741
D VL + AP
Sbjct: 176 TTDDVLVIEAPV 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 49.6 bits (117), Expect = 3e-06
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 267 KEETFADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC 326
E ++ V +S C TC K ++ CG+C+ YC TCQK W + HK+EC
Sbjct: 35 AERAYSAVVFDSLINFV-CHTCFKRQ--EKLHRCGQCKFAHYCDRTCQKDAWLN-HKNEC 90
Query: 327 GLYKAMMEREEELAMKIFMFPCSADQPCKWL 357
K + E ++ L
Sbjct: 91 AAIKKYGKVPNENIRLAARIMWRVEREGTGL 121
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 3e-05
Identities = 70/494 (14%), Positives = 129/494 (26%), Gaps = 125/494 (25%)
Query: 21 GLGPGSG-TCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRLHPGHLFGIRVGK---DSDW 76
G+ GSG T + A + + + +F + +
Sbjct: 157 GVL-GSGKTWV-----------------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 77 SNKKQPFPCAQFVGG--DGGDIGIYMFRNENDGK----RMTGSRETIR-------IPNVE 123
Q Q D + + + R+ S+ + N +
Sbjct: 199 LEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 124 LLRVTFETES--LMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGE------LWFRNP 175
F L+ K++ LS A+ T + + T E +
Sbjct: 258 AWNA-FNLSCKILLTTRFKQVTDFLS--AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 176 TLEELRFVYAFMRAISLVHPLL-----QVDTDGGPKWSRLLH-----FEPFIE-TVDVQW 224
++L R + +P + DG W H IE +++V
Sbjct: 315 P-QDLP------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 225 PPEMAKG-NDLVAVTVSHPPGQVYDERASSTSHSTPTKYAEPTKEETFADVRMNSNGGLR 283
P E K + L V+ A + + + K + V L
Sbjct: 368 PAEYRKMFDRLS----------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 284 QCATCEK--EVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAM 341
+ E + IY + + H+S Y + +
Sbjct: 418 EKQPKESTISIPS------------IYLELKVKLENEYALHRSIVDHYNIPKTFDSD--- 462
Query: 342 KIFMFPCSADQPCKWLEALGVHQKGMWR-RKCSCYSHC--PFGLLPVK----GGLWDLWG 394
+ P DQ + +G H K + + + + F L K W+ G
Sbjct: 463 --DLIPPYLDQ--YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 395 GLDDEEYPQD-APYHNHIRDGISSPILLSGWSEYYN--LRSLP------LSSPVADI--- 442
+ + Q Y +I D + P + N L LP + S D+
Sbjct: 519 SILNT--LQQLKFYKPYICD--NDPK----YERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 443 -LSHPLTVYYILTA 455
L +
Sbjct: 571 ALMAEDEAIFEEAH 584
Score = 41.0 bits (95), Expect = 0.002
Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 42/172 (24%)
Query: 114 RETIRIPNVEL-LRVTFETESLMFPSNKKMIRSLSLEAS--GTDRFP-VID--------- 160
TI IP++ L L+V E E + ++ ++ ++ + D P +D
Sbjct: 423 ESTISIPSIYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 161 -VTRCTTSGEL-WFRNPTLEELRFV--------YAFMRAISLVHPLLQVD------TDGG 204
+ + FR L+ RF+ A+ + S+++ L Q+ D
Sbjct: 480 HLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 205 PKWSR----LLHFEPFIETVDVQWPPEMAKGNDLVAVTVSHPPGQVYDERAS 252
PK+ R +L F P IE + +K DL+ + + +++E
Sbjct: 539 PKYERLVNAILDFLPKIEENLIC-----SKYTDLLRIALMAEDEAIFEEAHK 585
Score = 38.7 bits (89), Expect = 0.007
Identities = 90/697 (12%), Positives = 196/697 (28%), Gaps = 227/697 (32%)
Query: 1 MDLHLKNLFGRFQDQFGSGPGLGPGSGTC-----LMK-------VEGI--APNCIKSIYR 46
K++ F+D F + C + K ++ I + + + R
Sbjct: 14 HQYQYKDILSVFEDAFVD-------NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 47 AAAAL--YRTEPWKRLHPGHLFGIRVGKDSDW------SNKKQPFPCAQFVGGDGGDIGI 98
L + E ++ + + + + ++QP +
Sbjct: 67 LFWTLLSKQEEMVQKF-----VEEVLRINYKFLMSPIKTEQRQP----------SMMTRM 111
Query: 99 YM-FRNE--NDGKRMTGSRETIRIPNVELLRVTFETESL-------------MFPSNKKM 142
Y+ R+ ND + R+ LR ++L + S K
Sbjct: 112 YIEQRDRLYNDNQVFA-KYNVSRLQPYLKLR-----QALLELRPAKNVLIDGVLGSGKT- 164
Query: 143 IRSLSLEASGTDR------FPV--IDVTRCTTSGELWFRNPTLEELRFVYAFM------R 188
++L+ + + F + +++ C + + LE L+ + + R
Sbjct: 165 --WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV------LEMLQKLLYQIDPNWTSR 216
Query: 189 AISLVHPLLQVDTDGGPKWSRLLHFEPFIETV----DVQWPPEMAKGNDL---VAVTVSH 241
+ + L++ + RLL +P+ + +V + +L + +T
Sbjct: 217 SDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRF 274
Query: 242 PPGQVYDE-RASSTSHSTPTKYAEP-TKEET---FADVRMNSNGGLRQCATCEKEVHGDQ 296
QV D A++T+H + ++ T +E L +EV
Sbjct: 275 K--QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------REVLTTN 326
Query: 297 SVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAM------MEREE--ELAMKIFMFPC 348
I WK + + L + +E E ++ ++ +FP
Sbjct: 327 PRRLSIIAESIR-DGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 349 SADQPCKWLEALGVHQKGMWRRKCSCYSHCPFGLLPVKGGLWDLWGGLDDEEYPQDAPYH 408
SA P L +W + +
Sbjct: 384 SAHIPTILLSL--------------------------------IWFDVIKSD-VMV---- 406
Query: 409 NHIRDGISSPILLSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTALSISSKNRLLKGK 468
+ + + L+ + + + I L + +N +
Sbjct: 407 --VVNKLHKYSLVEKQPKESTIS-----------------IPSIYLELKVKLENEYALHR 447
Query: 469 EVILHYLGPEGELDWMPA--------FAEIGHLLNGSGNIQIVMVGPEVPTNL------- 513
++ HY P+ ++ IGH L + + + + V +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 514 --SGTTSGISSRVRVNLLRGV--YQE-----EATY----------LPSPHVIIALNCVLD 554
T S + +N L+ + Y+ + Y LP I N +
Sbjct: 508 RHDSTAWNASGSI-LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK----IEENLICS 562
Query: 555 RNGSWSGALDVIKTMGFPAFFTDQSEISCANAKQVLR 591
+ D+++ A + I KQV R
Sbjct: 563 KY------TDLLRI----ALMAEDEAIFEEAHKQVQR 589
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 45.6 bits (107), Expect = 5e-05
Identities = 23/119 (19%), Positives = 33/119 (27%), Gaps = 11/119 (9%)
Query: 267 KEETFADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC 326
+A V G C C + CGRC+ YC CQK+ W HK EC
Sbjct: 35 SCPAYACVLTVGERGHH-CECCFARK--EGLSKCGRCKQAFYCDVECQKEDWPL-HKLEC 90
Query: 327 GLYKAMMEREEELAMKIFMFPC-------SADQPCKWLEALGVHQKGMWRRKCSCYSHC 378
+ E P + L A+ + + +
Sbjct: 91 SSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLI 149
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 40.6 bits (94), Expect = 0.002
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 285 CATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEE----LA 340
C C ++ + C +CR YCS+ CQK+ W D + L + L
Sbjct: 50 CDRCLLGK--EKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLG 107
Query: 341 MKIFMFPCSADQPCKWLEAL 360
+F A + L +
Sbjct: 108 RVVFKLMDGAPSESEKLYSF 127
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.26
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 19/49 (38%)
Query: 130 ETESLMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLE 178
E ++L KK+ SL L A D P + + T+E
Sbjct: 18 EKQAL-----KKLQASLKLYAD--DSAPALAI------------KATME 47
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 29.6 bits (66), Expect = 0.41
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 285 CATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC 326
C C ++ C CR V YCS C ++ HK +C
Sbjct: 15 CVICLEK----PKYRCPACR-VPYCSVVCFRK-----HKEQC 46
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery,
DNA binding cyclic A transcription regulator; HET: CMP;
1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A*
3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A*
1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A*
3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 31.4 bits (72), Expect = 0.79
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 448 TVYYILT---ALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGS 497
T+YYI+ A+ I + GKE+IL YL G+ E+G G
Sbjct: 39 TLYYIVKGSVAVLIKDEE----GKEMILSYLNQ-GDF-----IGELGLFEEGQ 81
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 29.8 bits (67), Expect = 0.86
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMIN 722
+ Q PE + + G+ K+ + ++ + + +V ++ + RL G I
Sbjct: 7 YYQKPEEVVVTVFAKGIPKQNVNIDFGE------QILSVVIEVPGEDAYYLQPRLFGKII 60
Query: 723 IDEIS 727
D+
Sbjct: 61 PDKCK 65
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 31.2 bits (71), Expect = 0.95
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 448 TVYYILT---ALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGS 497
T+YYI+ A+ I + GKE+IL YL G+ E+G G
Sbjct: 89 TLYYIVKGSVAVLIKDEE----GKEMILSYLNQ-GDF-----IGELGLFEEGQ 131
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 31.4 bits (71), Expect = 1.2
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 13/107 (12%)
Query: 632 EFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDS 691
P W ++ A F + T + LPG K+++K+
Sbjct: 270 VVPDVTKGDWQPLIDALPNFVEQA-EQAPKPITIDTHNRQVRLFLPGFDKKQVKLTQYG- 327
Query: 692 KYLIIRTEAVDESTIPGRSFMRKFRLPGMI-NIDEISAGYEDGVLTV 737
E T+ R LP + A +++ L +
Sbjct: 328 ----------PEVTVEAGDQRRNIFLPPALSGRPITGAKFQNNYLII 364
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 31.5 bits (72), Expect = 1.2
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 682 EEIKVEVEDSKYLIIRTEAVDESTIPG-RSFMRKFRLPGM 720
EE +VE+E K L I+ AV + G R F L G
Sbjct: 586 EEFEVELERGKTLHIKALAVSDLNRAGQRQVF--FELNGQ 623
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 30.3 bits (69), Expect = 1.7
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 448 TVYYILT---ALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQ 501
T+++I+ + I + G+E+I+ YL G+ F E+G L G+ Q
Sbjct: 33 TLFFIIKGSVTILIEDDD----GREMIIGYLNS-GDF-----FGELG-LFEKEGSEQ 78
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 1.8
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 11/53 (20%)
Query: 263 AEPTKEETFADVRMNSNGGLRQCATC--------EKEVHGDQSVCCGRCRAVI 307
+ ++ N N L C C E+ GD V C C V+
Sbjct: 3 TRESIDKRAGRRGPNLNIVLT-CPECKVYPPKIVERFSEGD--VVCALCGLVL 52
>3lyc_A Putative pectinase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, lipoprotein; HET: MSE; 2.30A {Parabacteroides
distasonis}
Length = 241
Score = 30.5 bits (68), Expect = 1.9
Identities = 10/98 (10%), Positives = 25/98 (25%), Gaps = 7/98 (7%)
Query: 92 DGGDIGIYMFRNENDGKRMTGSRETIRIPNVELLRVTFETESLMFPSNKKMIRSLSLEAS 151
+ + I + + + + L ++ + + ++ +
Sbjct: 56 ENHKLKIRPKKEFRKHTNFRPTEFMVTANSRNLKKLAAAGSTHVNINSPLQAEEFEAGLA 115
Query: 152 GTDRFPVIDVTRCTT-------SGELWFRNPTLEELRF 182
G+ D T SG+ EEL
Sbjct: 116 GSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNG 153
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 28.7 bits (64), Expect = 2.3
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMIN 722
W QT + + + V+K ++ VE + + + S G + K L I
Sbjct: 14 WYQTESQVVITLMIKNVQKNDVNVEFSEKE---LSALVKLPS---GEDYNLKLELLHPII 67
Query: 723 IDEIS 727
++ +
Sbjct: 68 PEQST 72
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida
hydrolase; HET: NAG BTB; 1.95A {Saccharomyces
cerevisiae} PDB: 3lrl_A* 3lrm_A*
Length = 479
Score = 30.2 bits (67), Expect = 2.5
Identities = 20/143 (13%), Positives = 37/143 (25%), Gaps = 11/143 (7%)
Query: 304 RAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEALGVH 363
R V Y + ++ + E PC D+
Sbjct: 179 RPVFYSLCNWGQDLTFYWGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCS 238
Query: 364 QKGMWRRKCSCYSHCPFGLLPVKGGLWDLWGGLDDEEYPQDAPYHNHIRDGISSPILLSG 423
+ + + G L G L D+E H + + SP+++
Sbjct: 239 IMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEE----KAHFSMWAMVKSPLIIGA 294
Query: 424 WSEYYNLRSLPLSSPVADILSHP 446
N+ + L + I S
Sbjct: 295 -----NVNN--LKASSYSIYSQA 310
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich
domain, TNF receptor, structural genomics, PSI protein
structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Length = 134
Score = 29.2 bits (65), Expect = 2.5
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 15/96 (15%)
Query: 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC--GLYKAMMEREEELA 340
R +C+++ + S CC +C C + T C G Y A + +
Sbjct: 1 RSLPSCKEDEYPVGSECCPKCSPGYRVKEACGELT--GTVCEPCPPGTYIAHLNGLSK-- 56
Query: 341 MKIFMFPCSADQPCKWLEALGVHQKGMW--RRKCSC 374
C Q C L + C C
Sbjct: 57 -------CLQCQMCDPAMGLRASRNCSRTENAVCGC 85
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 30.3 bits (67), Expect = 3.0
Identities = 8/54 (14%), Positives = 12/54 (22%), Gaps = 3/54 (5%)
Query: 276 MNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIY---CSSTCQKQQWKDTHKSEC 326
+ C G + C CR C TC + +
Sbjct: 200 RGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQM 253
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 30.1 bits (68), Expect = 3.2
Identities = 23/118 (19%), Positives = 31/118 (26%), Gaps = 35/118 (29%)
Query: 295 DQSVC--CGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAMKIFMFPCSADQ 352
D++ C CGRC C K K K ++ E+E C
Sbjct: 143 DRTKCLLCGRCVNA------CGKNTETYAMKFLNKNGKTIIGAEDE--KCFDDTNC---- 190
Query: 353 PCKWLEALGVHQKGMWRRKCS-CYSHCPFGLLPVKGGLWDLWGGLDDEE---YPQDAP 406
C C CP L K + + L+ E AP
Sbjct: 191 -----------------LLCGQCIIACPVAALSEKSHMDRVKNALNAPEKHVIVAMAP 231
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 30.4 bits (69), Expect = 3.3
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 682 EEIKVEVEDSKYLIIRTEAVDESTIPG-RSFMRKFRLPGM---INIDEISAGYEDGVLTV 737
EE+ ++E K L+I +AV + G + F L G I + + + G +
Sbjct: 1031 EELFADIEKGKTLVIVNQAVSATDSQGMVTVF--FELNGQPRRIKVPDRAHGATGAAVRR 1088
Query: 738 MAPRS 742
A
Sbjct: 1089 KAEPG 1093
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 28.0 bits (61), Expect = 4.1
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 280 GGLRQCATCEKEVHGDQS--VCCGRCR 304
G + C C EV+ DQ +C C+
Sbjct: 1 GLVYPCGACRSEVNDDQDAILCEASCQ 27
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold, transferase; HET: DNA;
3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 29.9 bits (68), Expect = 4.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 563 LDVIKTMGFPAFF 575
L VI+ MGFP +F
Sbjct: 391 LSVIERMGFPGYF 403
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 29.6 bits (65), Expect = 4.5
Identities = 9/54 (16%), Positives = 12/54 (22%), Gaps = 3/54 (5%)
Query: 276 MNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIY---CSSTCQKQQWKDTHKSEC 326
N C G Q C CR C C + + +
Sbjct: 200 FGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQL 253
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 29.6 bits (65), Expect = 4.8
Identities = 16/139 (11%), Positives = 25/139 (17%), Gaps = 22/139 (15%)
Query: 277 NSNGGLRQCATCEKEVHGDQSVCCGRCRAVIY---CSSTCQKQQWKDTHKSECGLYKAMM 333
C G C C+ C C + +
Sbjct: 203 GPKPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYVL------- 255
Query: 334 EREEELAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFGLLPVKGGLWDLW 393
+ C + P L G +C CP + G
Sbjct: 256 -ETNPEGKYAYGATCVKECPGHLLRDNG-----------ACVRSCPQDKMDKGGECVPCN 303
Query: 394 GGLDDEEYPQDAPYHNHIR 412
G + +I
Sbjct: 304 GPCPKTCPGVTVLHAGNID 322
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich
domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo
sapiens}
Length = 171
Score = 28.7 bits (63), Expect = 4.8
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 15/105 (14%)
Query: 287 TCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC--GLYKAMMEREEE------ 338
+ + C +C Y C + T + C Y +E
Sbjct: 7 YLHYDEETSHQLLCDKCPPGTYLKQHCTAKW--KTVCAPCPDHYYTDSWHTSDECLYCSP 64
Query: 339 --LAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFG 381
++ C+ G + + C + CP G
Sbjct: 65 VCKELQYVKQECNRTHNRVCECKEGRYLEI---EFCLKHRSCPPG 106
>1k3v_A Capsid protein VP2; icosahadral, beta sheet, icosahedral virus;
3.50A {Porcine parvovirus} SCOP: b.121.5.2
Length = 579
Score = 29.4 bits (65), Expect = 5.2
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 601 VTPNPFRSPVRNHSPSSNLPSYSNGFVFGAMEF--PTYELSPWN--YILTAPAIFSYPII 656
+ PN + + +YSN + G + F + WN T A I
Sbjct: 498 IAPNLTDDFNADSPQQPRIITYSNFWWKGTLTFTAKMRSSNMWNPIQQHTTTAENIGNYI 557
Query: 657 PENYVHWTQTPE 668
P N PE
Sbjct: 558 PTNIGGIRMFPE 569
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 28.8 bits (65), Expect = 5.7
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 13/52 (25%)
Query: 448 TVYYILT---ALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNG 496
T+YY+++ ++ + +E++L Y G GE E+G +
Sbjct: 54 TLYYVISGSVSIIAEEDD----DRELVLGYFGS-GEF-----VGEMGLFIES 95
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 29.2 bits (64), Expect = 5.9
Identities = 8/53 (15%), Positives = 11/53 (20%), Gaps = 3/53 (5%)
Query: 277 NSNGGLRQCATCEKEVHGDQSVCCGRCRAVIY---CSSTCQKQQWKDTHKSEC 326
C G + C C + C C +T E
Sbjct: 208 GRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFES 260
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 26.6 bits (59), Expect = 6.9
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 24/63 (38%)
Query: 278 SNGGLRQCATCEKEVHGDQSV------------CCGRCRA------------VIYCSSTC 313
S+G +C C+K V+ + V C RC +C C
Sbjct: 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPC 64
Query: 314 QKQ 316
Sbjct: 65 YAT 67
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, beta, PHP, transferase; HET:
DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 29.0 bits (66), Expect = 7.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 563 LDVIKTMGFPAFF 575
L VI MGFP +F
Sbjct: 329 LQVINQMGFPGYF 341
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription,
transcription regulation; HET: BOG; 1.90A {Anabaena}
PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Length = 243
Score = 28.5 bits (64), Expect = 7.2
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 13/55 (23%)
Query: 448 TVYYILT---ALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGN 499
VY++L LS + G+E+ + L + F + L +
Sbjct: 63 RVYFLLKGAVKLSRVYEA----GEEITVALLRE-NSV-----FGVLSLLTGNKSD 107
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 29.2 bits (66), Expect = 7.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 682 EEIKVEVEDSKYLIIRTEAVDE 703
E +++E++ K LII+ E + E
Sbjct: 1014 ETVEIEIDKGKRLIIKLETISE 1035
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 28.9 bits (65), Expect = 8.0
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 19/107 (17%)
Query: 75 DWSNKKQPFPCAQFVGGDGGDIGIYMF---RNENDGKRMTGSRETIRIPNVELLRVTFET 131
W + + + DGGD +Y+ R E ++ + ++
Sbjct: 117 QWPDGEPS----NMILDDGGDATMYILIGARAEAGEDVLSNPQSEEEEVLFAQIKKRMAA 172
Query: 132 ESLMFPSNKKMIRSLS------------LEASGTDRFPVIDVTRCTT 166
F + I+ ++ L+ G FP I+V T
Sbjct: 173 TPGFFTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDSVT 219
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 28.8 bits (65), Expect = 8.1
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 87 QFVGGDGGDIGIYMFRNEN-DGKRMTGSRETIRIPNVELLRVTFETESLMFPSNKKMIRS 145
F G G +G Y+ + + TGS ET E + + P + +
Sbjct: 727 NFTPGRGSVMGDYLVDHPDISLIAFTGSMETGLRII--------ERAAKVHPGQANVKK- 777
Query: 146 LSLEASG 152
+ E G
Sbjct: 778 IISEMGG 784
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.429
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,313,572
Number of extensions: 772136
Number of successful extensions: 1643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1611
Number of HSP's successfully gapped: 72
Length of query: 766
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 665
Effective length of database: 3,881,772
Effective search space: 2581378380
Effective search space used: 2581378380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.7 bits)