RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 004229
(766 letters)
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 150
Score = 69.8 bits (170), Expect = 1e-14
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 10/96 (10%)
Query: 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDE----------STIPGRS 710
+ W +TPE+H+F ADLPGV+KEE+KVEVED L++ E E
Sbjct: 45 MDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGK 104
Query: 711 FMRKFRLPGMINIDEISAGYEDGVLTVMAPRSITRR 746
F+R+FRL ++E+ AG E+GVLTV P++ ++
Sbjct: 105 FVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKK 140
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 66.2 bits (161), Expect = 8e-14
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES-----------TIPGR 709
+ + + A LPGV KE+I + L IR +
Sbjct: 13 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDT-LEIRAKRSPLMITESERIIYSEIPEEE 71
Query: 710 SFMRKFRLPGMINIDEISAGYEDGVLTVMAPR 741
R +LP + + SA +E+GVL+V+ P+
Sbjct: 72 EIYRTIKLPATVKEENASAKFENGVLSVILPK 103
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 53.1 bits (127), Expect = 5e-10
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 283 RQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC 326
C C ++ S C C YC S CQ + W+ H C
Sbjct: 9 ESCWNCGRK----ASETCSGCNTARYCGSFCQHKDWE-KHHHIC 47
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 51.9 bits (124), Expect = 1e-09
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 285 CATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC 326
C C +E C C V YCS+ CQ++ WK H+ C
Sbjct: 2 CVNCGRE----AMSECTGCHKVNYCSTFCQRKDWK-DHQHIC 38
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 51.2 bits (122), Expect = 3e-09
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 284 QCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSEC 326
+CA C E C RC+ YC CQ + W+ H C
Sbjct: 10 RCAYCSAEAS----KRCSRCQNEWYCCRECQVKHWE-KHGKTC 47
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 34.5 bits (79), Expect = 0.005
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMIN 722
W QT + + + V+K ++ VE + + + G + K L I
Sbjct: 7 WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALV------KLPSGEDYNLKLELLHPII 60
Query: 723 IDEISAGYEDGVLTVM 738
++ + + +
Sbjct: 61 PEQSTFKVLSTKIEIK 76
>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 29.7 bits (65), Expect = 0.74
Identities = 16/110 (14%), Positives = 24/110 (21%), Gaps = 14/110 (12%)
Query: 284 QCATCEKEVHGDQ----------SVCCGRCRAVIY--CSSTCQKQQWKDTHKSECGLYKA 331
C T K + Q + CC A T C
Sbjct: 17 DCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCP 76
Query: 332 MMEREEELAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFG 381
+L ++ P + Q + + SC CP
Sbjct: 77 QPLVYNKLTFQLEPNPHTKYQYGGV--CVASCPHNFVVDQTSCVRACPPD 124
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF
{Aeropyrum pernix [TaxId: 56636]}
Length = 70
Score = 27.9 bits (62), Expect = 0.82
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 14 DQFGSGPGLGPGSGTCLMKVEGIAPNCIKSIYRAAAALYRTEPWK 58
++FGS S + KVEGI + I + P+K
Sbjct: 31 ERFGSLERFFTASKAEISKVEGIGEKRAEEIKK-----ILMTPYK 70
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 133
Score = 29.1 bits (64), Expect = 1.0
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 13/88 (14%)
Query: 300 CGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEA 359
C C C + C + ++ GL + ++ + P + E
Sbjct: 45 CIECGC---CIAACGTKIMREDFVGAAGLNR---------VVRFMIDPHDERTDEDYYEL 92
Query: 360 LGVHQKGMWRRKC-SCYSHCPFGLLPVK 386
+G +C+ CP L
Sbjct: 93 IGDDDGVFGCMTLLACHDVCPKNLPLQS 120
>d1kxpd2 a.126.1.1 (D:215-404) Vitamin D binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 190
Score = 29.1 bits (65), Expect = 1.5
Identities = 7/52 (13%), Positives = 12/52 (23%), Gaps = 1/52 (1%)
Query: 289 EKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELA 340
K C + C K++ +C K M+
Sbjct: 49 SKCCESASEDCMAKELPEHTVK-LCDNLSTKNSKFEDCCQEKTAMDVFVCTY 99
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 26.6 bits (59), Expect = 1.6
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 14 DQFGSGPGLGPGSGTCLMKVEGIAPNCIKSIYRA 47
G GL S + KV GI+ + I+ +
Sbjct: 20 KYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 53
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 25.9 bits (57), Expect = 3.1
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 269 ETFADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYC 309
+ F ++ + G R C C+ E+ C C+ ++C
Sbjct: 2 DAFQEIPLEEYNGERFCYGCQGELKDQHVYVCAVCQN-VFC 41
>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 149
Score = 27.4 bits (59), Expect = 3.6
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 3/74 (4%)
Query: 242 PPGQVYDERASSTSHSTPTKYAEPTKEETFADVRMNSNGGLRQCATCEKEVHGDQSVCCG 301
PP +Y+ + KY+ C + + +
Sbjct: 79 PPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVR 138
Query: 302 RCRAVIYCSSTCQK 315
+C+ C C+K
Sbjct: 139 KCKK---CEGPCRK 149
>d1m06g_ b.121.5.1 (G:) Microvirus capsid proteins {Bacteriophage
alpha3 [TaxId: 10849]}
Length = 187
Score = 26.8 bits (59), Expect = 7.9
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 573 AFFTDQSEISCANAKQVLRSAGLHITHPVTPNPFRSPVRNHSPSSNLPS 621
+ + S + V+ SAG++++ T P VR S S S
Sbjct: 64 FIVAMKVDTSPTDPNCVI-SAGVNLSFAGTSYPIVGIVRFESASEQPTS 111
>d2d8ra1 g.39.1.16 (A:8-93) THAP domain-containing protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 25.4 bits (55), Expect = 8.2
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 341 MKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSH 377
+ FP + +W+ + + C H
Sbjct: 20 ISFHRFPLDPKRRKEWVRLVRRKNFVPGKHTFLCSKH 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.429
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,044,662
Number of extensions: 152444
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 23
Length of query: 766
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 674
Effective length of database: 1,144,436
Effective search space: 771349864
Effective search space used: 771349864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)