BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004230
(766 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
Length = 766
Score = 1401 bits (3626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 685/766 (89%), Positives = 733/766 (95%)
Query: 1 MGSTLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIE 60
MG+ +L +L TEIL+PVCAV+GI F+L QW +VS+V+L+ R S N+ KNG+NDYLIE
Sbjct: 1 MGAAILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIE 60
Query: 61 EEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTK 120
EEEGIND +VV KCA+IQ+AISEGATSFLFTEY+YVG+FM+AFAILIF+FLGSVEGFST
Sbjct: 61 EEEGINDHNVVVKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTS 120
Query: 121 GQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKSVG 180
QAC+YD+ K CKPALATA FSTVSFLLG +TS++SGFLGMKIATYANARTTLEARK VG
Sbjct: 121 PQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLGMKIATYANARTTLEARKGVG 180
Query: 181 KAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALF 240
KAFI AFRSGAVMGFLLAANGLLVL+IAINLFK+YYGDDW GLFEAITGYGLGGSSMALF
Sbjct: 181 KAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALF 240
Query: 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA 300
GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA
Sbjct: 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA 300
Query: 301 ESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPS 360
ESSCAALVVASISSFG+NHE T+MLYPL++SS+GILVCL+TTLFATD FE+KAVKEIEP+
Sbjct: 301 ESSCAALVVASISSFGLNHELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPA 360
Query: 361 LKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGF 420
LKKQL+ISTVLMT+G+A+VS++ LP+SFTI+NFG QK VK+WQLFLCVAVGLWAGLIIGF
Sbjct: 361 LKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGLIIGF 420
Query: 421 VTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMY 480
VTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIA+SIFVSF+FAAMY
Sbjct: 421 VTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTFAAMY 480
Query: 481 GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIG 540
GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIG
Sbjct: 481 GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIG 540
Query: 541 KGFAIGSAALVSLALFGAFVSRAGITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSA 600
KGFAIGSAALVSLALFGAFVSRA ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSA
Sbjct: 541 KGFAIGSAALVSLALFGAFVSRASITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSA 600
Query: 601 ALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF 660
ALKMVEEVRRQFNTIPGLMEGT KPDYATCVKISTDASIKEMIPPGALVMLTPL+VGI F
Sbjct: 601 ALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLVVGILF 660
Query: 661 GVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAV 720
GVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHAR+LGPKGS+ HKAAV
Sbjct: 661 GVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDCHKAAV 720
Query: 721 IGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 766
IGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF
Sbjct: 721 IGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 766
>pdb|4AV3|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV3|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV6|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
pdb|4AV6|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
Length = 735
Score = 486 bits (1250), Expect = e-137, Method: Compositional matrix adjust.
Identities = 296/727 (40%), Positives = 423/727 (58%), Gaps = 84/727 (11%)
Query: 73 KCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMC 132
+ +I S I GA SFL E + + I AIL+ +F
Sbjct: 43 RMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIF---------------------- 80
Query: 133 KPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEAR--KSVGKAFIVAFRSG 190
T + V+FLLGA+ S +G +GMK+AT AN R AR K +G A VA++ G
Sbjct: 81 -----TTWQTGVAFLLGAVMSASAGIVGMKMATRANVRVAEAARTTKKIGPALKVAYQGG 135
Query: 191 AVMGFLLAANGLLVLFIAINLFKLYYGD--------DWEGL-----FEAITGYGLGGSSM 237
+VMG + LL L + +F + G +W G+ ++GY LG S +
Sbjct: 136 SVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGCSII 195
Query: 238 ALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFG 297
A+F RVGGG+YTKAAD+ ADLVGK E N+PEDDPRNPA IADNVGDNVGD+AG+G+DL
Sbjct: 196 AMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLE 255
Query: 298 SYAESSCAALVVAS------ISSFGIN--HEFTS------MLYPLLISSIGILVCLITTL 343
S+ + +++++AS + G N H+ + YP+ + +G+ ++ L
Sbjct: 256 SFVGAIVSSIILASYMFPIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGIL 315
Query: 344 FATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTI----YNFGAQKVV 399
+ + K + L L S +L V A +++ L + + FGA +
Sbjct: 316 Y---VIVKKPSDNPQRELNISLWTSALLTVVLTAFLTYFYLKDLQGLDVLGFRFGA---I 369
Query: 400 KNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSV 459
W +G+++G++IGF EYYTS Y P Q + S G + GL+LG KSV
Sbjct: 370 SPW---FSAIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMKSV 426
Query: 460 IIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMS 519
P + + I + FA +YG+A+AALGMLS +AT +++D+YGPI+DNAGGI+EM +
Sbjct: 427 FPPTLTLVLGILFADYFAGLYGVAIAALGMLSFVATSVSVDSYGPIADNAGGISEMCELD 486
Query: 520 HRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFV------SRAG-----ITTV 568
+R+ TD LDA GNTTAAIGKGFAIGSA +L+LF +++ S G + +
Sbjct: 487 PEVRKITDHLDAVGNTTAAIGKGFAIGSAIFAALSLFASYMFSQISPSDIGKPPSLVLLL 546
Query: 569 DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYA 628
++L +V G ++GA + Y+FS + +V AA+KMV+E+RRQ IPGL+EG KPDY
Sbjct: 547 NMLDARVIAGALLGAAITYYFSGYLISAVTKAAMKMVDEIRRQAREIPGLLEGKAKPDYN 606
Query: 629 TCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGG 688
C++I++D ++K+M P + +LTPL+ G G E + GVL G+++SG +AI +N+GG
Sbjct: 607 RCIEITSDNALKQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTVLSGAMLAILTANSGG 666
Query: 689 AWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVES 748
AWDNAKKY+EAG E KGSEPHKA VIGDT+GDPLKDT GPSL+ILIK+M+V S
Sbjct: 667 AWDNAKKYLEAGNLEGYG----KGSEPHKALVIGDTVGDPLKDTVGPSLDILIKIMSVVS 722
Query: 749 LVFAPFF 755
++ F
Sbjct: 723 VIAVSIF 729
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 472 VSFSFAAMYGIAVAA 486
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 472 VSFSFAAMYGIAVAA 486
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 472 VSFSFAAMYGIAVAA 486
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 472 VSFSFAAMYGIAVAA 486
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 472 VSFSFAAMYGIAVAA 486
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
++P +K I+++ G + ++ +GL + + + +W +F+ + GL+
Sbjct: 5 MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57
Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
VT + AY DV ++ R G+ T+ F +GY +IPI +A ++
Sbjct: 58 ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113
Query: 472 VSFSFAAMYGIAVAA 486
+ M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,769,518
Number of Sequences: 62578
Number of extensions: 839264
Number of successful extensions: 1915
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1903
Number of HSP's gapped (non-prelim): 12
length of query: 766
length of database: 14,973,337
effective HSP length: 106
effective length of query: 660
effective length of database: 8,340,069
effective search space: 5504445540
effective search space used: 5504445540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)