Query 004230
Match_columns 766
No_of_seqs 144 out of 732
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 19:48:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02255 H(+) -translocating i 100.0 1E-261 3E-266 2177.0 75.6 764 3-766 1-765 (765)
2 TIGR01104 V_PPase vacuolar-typ 100.0 2E-254 3E-259 2107.6 69.5 694 11-761 3-696 (697)
3 PLN02277 H(+) -translocating i 100.0 6E-250 1E-254 2081.0 66.6 686 18-756 2-730 (730)
4 PF03030 H_PPase: Inorganic H+ 100.0 3E-247 6E-252 2063.1 46.9 669 19-752 1-682 (682)
5 PRK00733 hppA membrane-bound p 100.0 1E-243 3E-248 2018.7 65.8 650 60-758 3-663 (666)
6 COG3808 OVP1 Inorganic pyropho 100.0 4E-238 8E-243 1905.7 60.1 679 11-757 5-701 (703)
7 COG3104 PTR2 Dipeptide/tripept 89.6 7.8 0.00017 45.4 14.9 77 245-349 132-209 (498)
8 PF03030 H_PPase: Inorganic H+ 79.5 19 0.00041 43.8 12.3 148 282-438 210-359 (682)
9 COG3808 OVP1 Inorganic pyropho 61.7 1.1E+02 0.0024 36.7 12.6 130 331-501 10-151 (703)
10 PF12670 DUF3792: Protein of u 59.5 1.5E+02 0.0032 28.1 11.2 102 298-417 14-115 (116)
11 TIGR00833 actII Transport prot 59.0 83 0.0018 39.5 12.1 93 457-560 198-296 (910)
12 PF06800 Sugar_transport: Suga 58.0 2.6E+02 0.0056 30.7 14.1 100 330-455 105-206 (269)
13 PRK11677 hypothetical protein; 52.4 17 0.00037 35.8 3.9 33 405-437 3-35 (134)
14 PF00344 SecY: SecY translocas 49.2 55 0.0012 36.4 7.6 114 543-660 202-323 (346)
15 PRK00733 hppA membrane-bound p 48.1 1.8E+02 0.0038 35.8 11.9 143 571-738 53-207 (666)
16 PF02355 SecD_SecF: Protein ex 45.1 1.1E+02 0.0023 31.6 8.4 74 603-684 103-179 (189)
17 PF03806 ABG_transport: AbgT p 43.9 6.2E+02 0.013 30.4 15.2 31 404-439 300-330 (502)
18 TIGR00921 2A067 The (Largely A 37.5 2.4E+02 0.0051 33.9 11.0 90 459-559 220-310 (719)
19 TIGR03434 ADOP Acidobacterial 37.4 3.1E+02 0.0067 33.2 12.0 87 71-169 705-796 (803)
20 COG4214 XylH ABC-type xylose t 36.0 2E+02 0.0043 33.1 9.3 110 74-193 220-338 (394)
21 PTZ00219 Sec61 alpha subunit; 33.8 1E+02 0.0022 36.2 6.9 71 584-657 371-441 (474)
22 PF08006 DUF1700: Protein of u 33.3 5.1E+02 0.011 25.9 12.3 20 193-212 142-161 (181)
23 PF11712 Vma12: Endoplasmic re 32.2 1.1E+02 0.0025 29.8 6.0 27 356-382 70-98 (142)
24 PF00957 Synaptobrevin: Synapt 31.5 1.5E+02 0.0034 26.3 6.3 40 71-110 40-83 (89)
25 PF12263 DUF3611: Protein of u 31.4 2.4E+02 0.0053 29.3 8.5 86 400-500 18-133 (183)
26 PF12331 DUF3636: Protein of u 28.7 40 0.00086 33.9 2.3 22 487-508 49-70 (149)
27 PRK01610 putative voltage-gate 28.5 3.7E+02 0.008 30.8 10.2 21 568-588 319-339 (418)
28 COG0201 SecY Preprotein transl 28.3 3.3E+02 0.0072 31.9 9.8 122 528-659 263-392 (436)
29 PF03672 UPF0154: Uncharacteri 27.9 96 0.0021 27.3 4.1 32 575-620 3-34 (64)
30 TIGR00966 3a0501s07 protein-ex 27.8 1.8E+02 0.0038 30.9 7.0 67 603-683 170-245 (246)
31 PRK10720 uracil transporter; P 27.0 1E+03 0.022 27.5 20.7 18 407-424 183-200 (428)
32 KOG0860 Synaptobrevin/VAMP-lik 26.2 1.9E+02 0.004 28.3 6.1 23 71-93 59-87 (116)
33 TIGR01104 V_PPase vacuolar-typ 26.2 4.7E+02 0.01 32.5 10.8 141 142-296 511-675 (697)
34 COG0385 Predicted Na+-dependen 25.1 6.7E+02 0.015 28.4 11.0 78 356-438 115-200 (319)
35 PF15176 LRR19-TM: Leucine-ric 24.5 74 0.0016 30.3 3.1 36 401-436 16-58 (102)
36 COG3105 Uncharacterized protei 24.4 93 0.002 31.0 3.8 29 404-432 7-35 (138)
37 PRK01844 hypothetical protein; 24.4 1.2E+02 0.0026 27.3 4.1 39 575-643 10-48 (72)
38 TIGR00967 3a0501s007 preprotei 24.4 7.8E+02 0.017 28.3 11.8 109 544-659 257-373 (410)
39 COG5336 Uncharacterized protei 23.8 95 0.0021 30.1 3.6 24 402-425 46-69 (116)
40 PF06295 DUF1043: Protein of u 23.6 76 0.0016 30.7 3.1 24 408-431 2-25 (128)
41 COG2443 Sss1 Preprotein transl 23.2 76 0.0016 28.0 2.7 34 601-634 4-37 (65)
42 TIGR00400 mgtE Mg2+ transporte 23.1 4.8E+02 0.01 30.1 9.8 94 323-425 316-415 (449)
43 PRK00523 hypothetical protein; 23.0 1.3E+02 0.0029 27.0 4.2 39 575-643 11-49 (72)
44 COG1422 Predicted membrane pro 22.8 2.8E+02 0.006 29.5 7.1 33 67-99 96-128 (201)
45 PRK15374 pathogenicity island 22.1 7.5E+02 0.016 30.1 11.1 90 501-612 369-460 (593)
46 PF04911 ATP-synt_J: ATP synth 21.9 37 0.0008 28.9 0.5 7 269-275 39-45 (54)
47 COG1288 Predicted membrane pro 20.8 4.3E+02 0.0093 31.3 8.7 33 78-110 261-293 (481)
48 PF00110 wnt: wnt family; Int 20.6 96 0.0021 34.3 3.5 23 593-615 22-44 (310)
49 PF10389 CoatB: Bacteriophage 20.5 2.1E+02 0.0045 23.8 4.5 31 5-35 14-44 (46)
50 KOG0793 Protein tyrosine phosp 20.4 43 0.00094 41.0 0.9 16 265-280 794-809 (1004)
51 PF03649 UPF0014: Uncharacteri 20.3 1E+02 0.0022 33.3 3.5 64 576-650 129-192 (250)
52 COG4956 Integral membrane prot 20.2 1E+03 0.022 27.2 11.1 18 596-613 211-228 (356)
53 PF11239 DUF3040: Protein of u 20.1 1.4E+02 0.0031 26.6 3.9 17 602-618 8-25 (82)
54 PF05767 Pox_A14: Poxvirus vir 20.1 3.5E+02 0.0076 25.5 6.3 63 86-162 4-68 (92)
No 1
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=1.2e-261 Score=2176.99 Aligned_cols=764 Identities=90% Similarity=1.360 Sum_probs=706.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCC-CCCCCCcchhhhhhcCCCchhhhHHHHHHHHHH
Q 004230 3 STLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNS-DKKNGFNDYLIEEEEGINDQSVVAKCADIQSAI 81 (766)
Q Consensus 3 ~~~~s~~a~~~~~~~~~~l~l~~a~~~~~~v~~~~~~~~~~~~~~~-~~~~G~~~~l~~~~~g~~~~~~~~~m~eIa~~I 81 (766)
++++||.+++.+++++++++++||+++++||+|++.++++.++++. ++.++..|++.+++||+++++.++|||||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~eG~~~~~~~~~m~~Ia~~I 80 (765)
T PLN02255 1 MAILSELATEVLIPVAALIGIAFALLQWYLVSRVKVSPDSGASSNGGGGGGGYGDYLIEEEEGLNDHNVVAKCAEIQNAI 80 (765)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccccccccccCccccccCHHHHHHHHHH
Confidence 4689999999999999999999999999999999987776665544 466677888888888877888899999999999
Q ss_pred HHhHHHhHHhhhhhHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhHhh
Q 004230 82 SEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGM 161 (766)
Q Consensus 82 ~eGA~AfL~~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Fl~Ga~~S~laG~iGM 161 (766)
||||++||+||||++++|++++++++++++.+.++.+..+++|.++.++.+.++....++++++|++|++||.++||+||
T Consensus 81 ~eGA~afL~rqyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~~aG~iGM 160 (765)
T PLN02255 81 SEGATSFLFTEYKYVGIFMVIFAAVIFVFLGSVEGFSTKSQPCTYDKGKLCKPALANAAFSTVAFLLGALTSVVSGFLGM 160 (765)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999776665444455556666666677777777778999999999999999999999
Q ss_pred hhhhhhhHhhHHHHhhChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHhhchhhHHHHHHH
Q 004230 162 KIATYANARTTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFG 241 (766)
Q Consensus 162 ~vAt~aN~Rta~aA~~~~~~al~vafr~G~VmGl~vvglgLl~l~~~~~~~~~~~~~~~~~~~~~i~gfg~GaS~iALFa 241 (766)
|+|||+|+|||+|||+++++||++|||+|+||||+|+||+|++++++|++|..+++++....+++++||+||+|++|||+
T Consensus 161 ~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAlFa 240 (765)
T PLN02255 161 KIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLYYGDDWEGLYEAITGYGLGGSSMALFG 240 (765)
T ss_pred HHHHHHHHHHHHHHHhchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHhhhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865454444345789999999999999999
Q ss_pred HHhcccccchhhccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhcCCcccc
Q 004230 242 RVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEF 321 (766)
Q Consensus 242 RvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLfESy~~si~aamvlg~~~~~~~~~~~ 321 (766)
|+||||||||||||||||||||+|||||||||||||||||||||||||||||||||||+++++|+|+|+....++.+.++
T Consensus 241 RvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~s~vaamilg~~~~~~~~~~~ 320 (765)
T PLN02255 241 RVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHDF 320 (765)
T ss_pred HHcCceeeeccccchhhhhhhhcCCCCCCCCCcchHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999963212222233
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccch
Q 004230 322 TSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKN 401 (766)
Q Consensus 322 ~~v~~Pl~i~a~gil~siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 401 (766)
..+.|||+++++||++|+||++++|.+++.++++|++++||+|+|+|+++++++++++++|++|+.+.....++....++
T Consensus 321 ~~v~~PLli~~~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~ 400 (765)
T PLN02255 321 TAMCYPLLISSVGIIVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVLMTVGIAVVSWLALPSSFTIFNFGTQKVVKN 400 (765)
T ss_pred chhhHHHHHHHHHHHHHHHHHHheecccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccccc
Confidence 45999999999999999999999986667777779999999999999999999999999999886543221122223457
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004230 402 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYG 481 (766)
Q Consensus 402 ~~~~~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~pvl~i~~ai~~sy~l~GlyG 481 (766)
|++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+||++||+||++|+++|+++++.||+++|+||
T Consensus 401 ~~~f~~~~iGl~~g~lI~~iTeYyTs~~y~PV~~IA~aS~tG~ATnII~GlavGm~St~~Pvl~I~~ai~~sy~l~glyG 480 (765)
T PLN02255 401 WQLFFCVAIGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSLAAMYG 480 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhheeccccccccCcchhHhhcCCChHHHHHhhhhhhcCCccccccchhhHHHHHHHHHHHHHHHHh
Q 004230 482 IAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVS 561 (766)
Q Consensus 482 iAiAa~GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~aLaLf~ay~~ 561 (766)
+|+|++|||||++++|++|+||||+||||||||||++|||||||||+||++||||||+|||||||||+|+||+||++|++
T Consensus 481 iaiAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~ay~~ 560 (765)
T PLN02255 481 IAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVS 560 (765)
T ss_pred HHHHHHHHHHHhHHhheeecccCcccCccCHHHHhcCCHHHHHHhhhhcccCCchhhhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhh
Q 004230 562 RAGITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKE 641 (766)
Q Consensus 562 ~~~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~Alke 641 (766)
+.++..+|+.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||||++||||+||||||||+||||
T Consensus 561 ~~~~~~~~l~~P~Vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeG~~kPDY~~cV~I~T~aAlke 640 (765)
T PLN02255 561 RAGISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKE 640 (765)
T ss_pred hcCCCeeecCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhcCCCCCChHHHHHHHHHHHHHh
Confidence 98887899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhHHhhcccccccccCCCCCcccccccc
Q 004230 642 MIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVI 721 (766)
Q Consensus 642 Mi~Pgllavl~Pi~vG~~~G~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVv 721 (766)
||+|+++++++|+++|++||+++++|+|+|++++|++||+||+|+||||||||||||+|++++..++||||||+||||||
T Consensus 641 Mi~Pgll~v~~Pi~vg~~~G~~al~GlL~G~~vsGv~lAi~maNaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVv 720 (765)
T PLN02255 641 MIPPGALVMLTPLIVGTLFGVETLSGVLAGALVSGVQIAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDPHKAAVI 720 (765)
T ss_pred hhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHcCccccccccCCCCcHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999654445679999999999999
Q ss_pred ccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 004230 722 GDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 766 (766)
Q Consensus 722 GDTVGDP~KDTaGPslniLIKlm~~vslv~ap~~~~~~~~~~~~~ 766 (766)
|||||||||||||||||||||||++|||||+|+|.+++|++.+|.
T Consensus 721 GDTVGDPfKDTaGPslNiLIKlm~~vslv~ap~~~~~~~~~~~~~ 765 (765)
T PLN02255 721 GDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFAAHGGLLFKWL 765 (765)
T ss_pred CCCCCCcccccccchHhHHHHHHHHHHHHHHHHHHhcCccceecC
Confidence 999999999999999999999999999999999999889998874
No 2
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=100.00 E-value=1.6e-254 Score=2107.64 Aligned_cols=694 Identities=86% Similarity=1.329 Sum_probs=644.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHHHHHhHHHhHH
Q 004230 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (766)
Q Consensus 11 ~~~~~~~~~~l~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~g~~~~~~~~~m~eIa~~I~eGA~AfL~ 90 (766)
.+|+++++++++++|++++++||+|++ +| +|||||||++|||||++||+
T Consensus 3 ~~~~~~~~~~~gl~~a~~~~~~v~~~~-------------------------~G------~~~M~~Ia~~I~eGA~afL~ 51 (697)
T TIGR01104 3 TEILIPVCAVIGIAYAVLQWVWVSRVK-------------------------LG------TAKMAEIQQAISEGATAFLF 51 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCC-------------------------CC------cHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999953 47 89999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhHhhhhhhhhhHh
Q 004230 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (766)
Q Consensus 91 ~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Fl~Ga~~S~laG~iGM~vAt~aN~R 170 (766)
||||++++|++++++++++++++.+++ ..+++++|++|++||.+|||+|||+|||+|+|
T Consensus 52 rqyk~i~~~~vi~~v~l~~~~~~~~~~---------------------~~~~a~~Fl~Ga~~S~laG~iGM~iat~aNvR 110 (697)
T TIGR01104 52 TEYKYVAVFMVAFAVLIFVFLGSREGF---------------------SDFSTVAFLLGAVTSLLAGYLGMKIATYANAR 110 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc---------------------hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999987655421100 12799999999999999999999999999999
Q ss_pred hHHHHhhChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHhhchhhHHHHHHHHHhcccccc
Q 004230 171 TTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTK 250 (766)
Q Consensus 171 ta~aA~~~~~~al~vafr~G~VmGl~vvglgLl~l~~~~~~~~~~~~~~~~~~~~~i~gfg~GaS~iALFaRvGGGIyTK 250 (766)
||+||++++++||++|||||+||||+|+||+|++++++|++|..+++++..+.+++++||+||+|++|||+|+|||||||
T Consensus 111 tA~AA~~~~~~al~vafrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTK 190 (697)
T TIGR01104 111 TTLEARKGVGKALIVAFRSGAVMGFLLAGLGLLVLYITILVFKIYYGDDWEGLFEPITGYGFGASSMALFGRVGGGIYTK 190 (697)
T ss_pred HHHHHHhCHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHhcccCchhhhhhhHHhhhcccHHHHHHHHHHcCceeee
Confidence 99999999999999999999999999999999999999999975444444445789999999999999999999999999
Q ss_pred hhhccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhcCCccccchhHHHHHH
Q 004230 251 AADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLI 330 (766)
Q Consensus 251 AADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLfESy~~si~aamvlg~~~~~~~~~~~~~v~~Pl~i 330 (766)
|||||||||||||+|||||||||||||||||||||||||||||||||||+++++|+|+|+.....+...++..++|||++
T Consensus 191 AADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADlFESy~~s~iaamvlg~~~~~~~~~~~~~v~~Pl~~ 270 (697)
T TIGR01104 191 AADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDIAGMGADLFESYAESSCAALVLASISSFGLPHDFTAMLYPLAL 270 (697)
T ss_pred ccccchhhhcccccCCCCCCCCCchhHHHhcCCcccchhcccchHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999963212222223358999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHH
Q 004230 331 SSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAV 410 (766)
Q Consensus 331 ~a~gil~siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (766)
+++||++|++|++++| .++++||+++||||+|+|++++++.+|++++|++|..+....++.....++|++|+|+++
T Consensus 271 ~~~gi~~Siig~~~v~----~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~ 346 (697)
T TIGR01104 271 SSVGILVCLLTTLFVK----IKPVKEIEPALKKQLIISTVLMTVGVAVISWVALPTGFTIFNFGTQKEVSNWQLFLCVAV 346 (697)
T ss_pred HHHHHHHHHHHheEEe----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHH
Confidence 9999999999999964 455668999999999999999999999999999986544322222234567899999999
Q ss_pred HHHHHHHHHHHhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004230 411 GLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGML 490 (766)
Q Consensus 411 Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~pvl~i~~ai~~sy~l~GlyGiAiAa~GML 490 (766)
|++.|++|+++||||||++||||||||++|+||||||||+||++||+||++|+++|+++++.||+++|+||+|+|++|||
T Consensus 347 Gl~~g~lI~~iTeYyTs~~y~PV~~IA~as~tG~AtnII~Gla~Gm~St~~pvl~I~~~i~~sy~~~GlyGiaiAa~GML 426 (697)
T TIGR01104 347 GLWAGLLIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAASIIVSFSFAGMYGIAMAALGML 426 (697)
T ss_pred HHHHHHHHHHhheeecCCCCCcHHHHHHHhCcCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhheeccccccccCcchhHhhcCCChHHHHHhhhhhhcCCccccccchhhHHHHHHHHHHHHHHHHhhhccccccc
Q 004230 491 STIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGITTVDV 570 (766)
Q Consensus 491 st~~i~la~DayGPIaDNAgGIAEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~aLaLf~ay~~~~~~~~~~l 570 (766)
||++++|++|+||||+||||||||||+|||||||+||+||++||||||++||||||||+|+||+||++|+++.++..+|+
T Consensus 427 st~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~TD~LDavGNTT~Ai~KGfAIGSAaL~alaLF~ay~~~~~~~~~~l 506 (697)
T TIGR01104 427 STAGTGLAIDAYGPISDNAGGIAEMAGLPHRVRERTDALDAVGNTTAAIGKGFAIGSAALVALALFGAFVSRAVITTVDV 506 (697)
T ss_pred HHhhheeeeecccCcccCcccHHHHhcCCHHHHHhhhhccccCCcchhhccceehhhHHHHHHHHHHHHHHHhccCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred CChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHH
Q 004230 571 LTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVM 650 (766)
Q Consensus 571 ~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~AlkeMi~Pgllav 650 (766)
.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||||++||||+||||||||+||||||+|+++++
T Consensus 507 ~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~aAlkeMi~Pgll~i 586 (697)
T TIGR01104 507 LTPKVFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGLLVM 586 (697)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHHHHHHhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhHHhhcccccccccCCCCCccccccccccccCCCCC
Q 004230 651 LTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLK 730 (766)
Q Consensus 651 l~Pi~vG~~~G~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDP~K 730 (766)
++|+++|++||+++++|+|+|++++|++||+||+|+||||||||||||+|+ ++++++||||||+|||||||||||||||
T Consensus 587 ~~Pi~vG~~~G~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE~G~-~~~~~~ggKGS~aHkAaVvGDTVGDPfK 665 (697)
T TIGR01104 587 LTPLIVGFLFGVETLSGVLAGVLVSGVQIAISASNTGGAWDNAKKYIEAGS-EHARSLGPKGSEAHKAAVIGDTVGDPLK 665 (697)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHhcCc-cccccCCCCCcHHhhccccCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999994 3345679999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 004230 731 DTSGPSLNILIKLMAVESLVFAPFFATHGGL 761 (766)
Q Consensus 731 DTaGPslniLIKlm~~vslv~ap~~~~~~~~ 761 (766)
||||||||||||+|++|||||+|+|.+++++
T Consensus 666 DTaGPslNilIKlm~~vslv~ap~~~~~~~~ 696 (697)
T TIGR01104 666 DTSGPSLNILIKLMAVESLVFAPFFATHGGL 696 (697)
T ss_pred ccccchHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999887554
No 3
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=6.4e-250 Score=2080.99 Aligned_cols=686 Identities=41% Similarity=0.670 Sum_probs=625.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHHHHHhHHHhHHhhhhhHH
Q 004230 18 CAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVG 97 (766)
Q Consensus 18 ~~~l~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~g~~~~~~~~~m~eIa~~I~eGA~AfL~~qyk~i~ 97 (766)
+++++|+||+|+++||+|++ +| +|||||||++|||||++||+||||+++
T Consensus 2 ~~~l~l~~a~~~~~~v~~~~-------------------------~G------~~~M~~Ia~~I~eGA~afL~~qyk~i~ 50 (730)
T PLN02277 2 VCIISLLFSLYLTKWVLAKD-------------------------EG------PPEMVEISDAIRDGAEGFFRTQYGTIS 50 (730)
T ss_pred hHHHHHHHHHHHHHHHHcCC-------------------------CC------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999953 47 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhHhhhhhhhhhHhhHHHHhh
Q 004230 98 VFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARK 177 (766)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~ 177 (766)
+|++++++++++++.+. +.+.+++ ....++...++++++||++|++||++|||+|||+|||+|+|||+|||+
T Consensus 51 ~~~vv~~~~l~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aNvRtA~AA~~ 122 (730)
T PLN02277 51 KMAVVLAFVILGIYLFR-SLTPQQE-------AAGLGRATSAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSSAARR 122 (730)
T ss_pred HHHHHHHHHHHHHHhcc-ccccccc-------cccccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 99999999987655431 1121111 112233345688999999999999999999999999999999999999
Q ss_pred ChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCC------CchhhhHHHHhhchhhHHHHHHHHHhcccccch
Q 004230 178 SVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD------DWEGLFEAITGYGLGGSSMALFGRVGGGIYTKA 251 (766)
Q Consensus 178 ~~~~al~vafr~G~VmGl~vvglgLl~l~~~~~~~~~~~~~------~~~~~~~~i~gfg~GaS~iALFaRvGGGIyTKA 251 (766)
++++||++|||||+||||+|+||+|++++++|++|..++.. +..+.+++++||+||+|++|||+||||||||||
T Consensus 123 ~~~~al~vAfrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKA 202 (730)
T PLN02277 123 SAREALQIAVRAGGFSALVVVGMTVLGVAILYATFYVWLGVDSPGGMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKA 202 (730)
T ss_pred CHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHhhhccHHHHHHHHHHcCceeeec
Confidence 99999999999999999999999999999999998644321 122357799999999999999999999999999
Q ss_pred hhccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhc--CCccccchhHHHHH
Q 004230 252 ADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF--GINHEFTSMLYPLL 329 (766)
Q Consensus 252 ADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLfESy~~si~aamvlg~~~~~--~~~~~~~~v~~Pl~ 329 (766)
||||||||||||+|||||||||||||||||||||||||||||||||||+++++++|+||..... ........++|||+
T Consensus 203 ADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGDvAGmgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~v~~Pl~ 282 (730)
T PLN02277 203 ADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAKRCKIEDPSGFILFPLV 282 (730)
T ss_pred cccchhhhhhhhcCCCCCCCCCchHHHHHhCCcccccccccchhHHHHHHHHHHHHHHHHHHhhccCcccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999964311 11111245999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccc---ccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHH
Q 004230 330 ISSIGILVCLITTLFATDIFEVKA---VKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFL 406 (766)
Q Consensus 330 i~a~gil~siig~~~~~~~~~~~~---~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 406 (766)
++++||++|++|++++|...++++ ++||+++||||+|+|++++++++|++++|++.+ ...+..||++|+
T Consensus 283 i~~~gii~Siig~~~vr~~~~~~~~~~~~~p~~aL~~g~~vs~~l~~v~~~~~~~~~l~~--------~~~~~~~~~~f~ 354 (730)
T PLN02277 283 VHSFDLVVSSIGILSIKGTRDSSVKSPVEDPMAVLQKGYSVTIILAVVTFGASTRWLLYT--------EQAPSAWFNFAL 354 (730)
T ss_pred HHHHHHHHHHHHHheEeccCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccccchHHHHHH
Confidence 999999999999999863111001 258999999999999999999999999987632 011124678999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---------
Q 004230 407 CVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA--------- 477 (766)
Q Consensus 407 ~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~pvl~i~~ai~~sy~l~--------- 477 (766)
|+++|+++|++|+++||||||++||||||||++|+||||||||+||++||+||++|+++|+++++.||+++
T Consensus 355 ~~~~Gl~~g~lI~~iTeYYTs~~y~PV~~IA~aS~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~~~~~ 434 (730)
T PLN02277 355 CGLVGIITAYAFVWISQYYTDYKYEPVRTLALASTTGHGTNIIAGVSLGLESTALPVLVISVAIISAYWLGNTSGLVDEN 434 (730)
T ss_pred HHHHHHHHHHHHHHeeeeeCCCCCCcHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----HHHHHHHHHHHHhhhhhhhheeccccccccCcchhHhhcCCChHHHHHhhhhhhcCCccccccchhhHHHHHHHH
Q 004230 478 -----AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVS 552 (766)
Q Consensus 478 -----GlyGiAiAa~GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~a 552 (766)
|+||+|+|++|||||++++|++|+||||+||||||||||+||||||||||+||++||||||++||||||||+|++
T Consensus 435 ~~~~~GlyGialAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDavGNTTaAi~KGfAIGSAaL~a 514 (730)
T PLN02277 435 GNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALAS 514 (730)
T ss_pred ccccccHHHHHHHHHHHHhhcceeEEeecccCcccCcccHHHHccCCchhhhhccccccccCcchhhcccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc------ccccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 004230 553 LALFGAFVSRAG------ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPD 626 (766)
Q Consensus 553 LaLf~ay~~~~~------~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPd 626 (766)
|+||++|+++++ +..+|+.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||||++|||
T Consensus 515 laLF~ay~~~~~~~~~~~~~~~~l~~p~Vl~GlliG~mlpflFsal~m~AVg~aA~~mVeEVRRQFreipGi~eG~~kPd 594 (730)
T PLN02277 515 FLLFSAYMDEVSAFAGVPFKEVDIAIPEVFVGGLLGSMLIFLFSAWACAAVGRTAQEVVNEVRRQFAERPGIMDYKEKPD 594 (730)
T ss_pred HHHHHHHHHHhhhhhccccceeeCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCC
Confidence 999999999863 35699999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhcchhhHHHHhhHHHHHh------------hhhhhHHHHhhHHHHHHHHHHHHhhcccchhhhhh
Q 004230 627 YATCVKISTDASIKEMIPPGALVMLTPLIVGIF------------FGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAK 694 (766)
Q Consensus 627 Y~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~------------~G~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAK 694 (766)
|+||||||||+||||||+|+++++++|+++|++ +|+++++|||+|++++|++||+||+|+||||||||
T Consensus 595 Y~~cV~I~T~aAlreMi~Pgllail~Pi~vg~~~~~~G~~~~~~~~g~~al~GlL~G~~vsGv~lAi~m~NaGGAWDNAK 674 (730)
T PLN02277 595 YGRCVAIVASAALREMIKPGALAVISPIVVGLVFRILGYATGQPLLGAKVVAGMLMFATVSGILMALFLNTAGGAWDNAK 674 (730)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhHH
Confidence 999999999999999999999999999999988 46799999999999999999999999999999999
Q ss_pred hHHhhcccccccccCCCCCccccccccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 004230 695 KYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFA 756 (766)
Q Consensus 695 KyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDP~KDTaGPslniLIKlm~~vslv~ap~~~ 756 (766)
||||+|++ ||||||+|||||||||||||||||||||||||||||++|||||+|+|.
T Consensus 675 KyIE~G~~------ggKGS~aHkAaVvGDTVGDPfKDTaGPSlNiLIKlm~~vslV~ap~~~ 730 (730)
T PLN02277 675 KYIETGAL------GGKGSEAHKAAVTGDTVGDPFKDTAGPSIHVLIKMLATITLVMAPMFL 730 (730)
T ss_pred HHHhcCCC------CCCCcHHhhccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHhhC
Confidence 99999974 899999999999999999999999999999999999999999999973
No 4
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=100.00 E-value=2.8e-247 Score=2063.14 Aligned_cols=669 Identities=55% Similarity=0.893 Sum_probs=606.8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHHHHHhHHHhHHhhhhhHHH
Q 004230 19 AVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGV 98 (766)
Q Consensus 19 ~~l~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~g~~~~~~~~~m~eIa~~I~eGA~AfL~~qyk~i~~ 98 (766)
++++++||+|+++||+|++ +| +|+||||+++|||||++||+||||++++
T Consensus 1 ~~~~l~~a~~~~~~v~~~~-------------------------~G------~~~m~~Ia~~I~eGA~aFL~reYk~i~~ 49 (682)
T PF03030_consen 1 AVLGLIFALFLARWVLKQD-------------------------EG------NEKMQEIAAAIQEGAMAFLKREYKTIAI 49 (682)
T ss_dssp -HHHHHHHHHHHHHHHTS-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCC-------------------------CC------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999953 57 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhHhhhhhhhhhHhhHHHH-hh
Q 004230 99 FMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEA-RK 177 (766)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA-~~ 177 (766)
|+++++++|++++...+ ..++++++||++|++||.+|||+||++|||+|+||+++| ++
T Consensus 50 ~~vi~~~ll~~~~~~~~---------------------~~~~~taiaFliGa~~S~laGyiGM~vAt~aN~Rta~AAr~~ 108 (682)
T PF03030_consen 50 FIVIVAILLFFLLGFLG---------------------GQGWWTAIAFLIGALCSALAGYIGMRVATRANVRTANAARTR 108 (682)
T ss_dssp HHHHHHHHHHHHHHCCC---------------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred HHHHHHHHHHHHHhhcc---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHhcC
Confidence 99999999988764310 135799999999999999999999999999999999999 59
Q ss_pred ChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcC-CCchhhhHHHHhhchhhHHHHHHHHHhcccccchhhccc
Q 004230 178 SVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYG-DDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGA 256 (766)
Q Consensus 178 ~~~~al~vafr~G~VmGl~vvglgLl~l~~~~~~~~~~~~-~~~~~~~~~i~gfg~GaS~iALFaRvGGGIyTKAADVGA 256 (766)
|+++||++|||+|+||||+|+|++|++++++|++|...+. .++++.+++++||+||+|++|||+|+|||||||||||||
T Consensus 109 gl~~AL~vAfrgGaVmGl~vvglgLlgl~~l~~i~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGA 188 (682)
T PF03030_consen 109 GLNKALQVAFRGGAVMGLSVVGLGLLGLSILFLIFSAFFGKTNPENAPEALSGFGFGASSIALFARVGGGIYTKAADVGA 188 (682)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHhhcchHHHHHHHHHHcCceehhHHHHhh
Confidence 9999999999999999999999999999999999976544 345677899999999999999999999999999999999
Q ss_pred cccchhccCCCCCCCCCccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhcCCccccchhHHHHHHHHHHHH
Q 004230 257 DLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGIL 336 (766)
Q Consensus 257 DLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLfESy~~si~aamvlg~~~~~~~~~~~~~v~~Pl~i~a~gil 336 (766)
|||||||+|||||||||||||||||||||||||||||||||||+++++|+|+|+.........+...++|||+++++||+
T Consensus 189 DLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~sivaamilg~~~~~~~~~~~~~v~~Pl~i~~~gii 268 (682)
T PF03030_consen 189 DLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESYVVSIVAAMILGSTLFGTNGFNFSGVLFPLLIAAVGII 268 (682)
T ss_dssp HHHHHTTS---TT-TT-TTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTT-HHHHTHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcccchHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986532211223379999999999999
Q ss_pred HHHHHHhhhhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHHHHHHHH
Q 004230 337 VCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416 (766)
Q Consensus 337 ~siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~g~ 416 (766)
+|++|++++|.. +.++.+||+|+||+|+|++++++++++|++++|++..+. ...+..||++|+|+++|+++|+
T Consensus 269 ~Siig~~~v~~~-~~~~~~~~~~aL~~g~~vs~~l~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~iGl~~g~ 341 (682)
T PF03030_consen 269 ASIIGIFFVRTK-KGATSKDPMKALRRGYIVSSILSIILFFFLTYWLLGFSF------FGSGISWWGLFGCVLIGLVAGV 341 (682)
T ss_dssp HHHHHHHHHHTT----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSEETT------EEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHheeEEEec-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccCCcchHHHHHHHHHHHHHHH
Confidence 999999998743 333456999999999999999999999999999882111 1234678999999999999999
Q ss_pred HHHHHhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhh
Q 004230 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA-----AMYGIAVAALGMLS 491 (766)
Q Consensus 417 lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~pvl~i~~ai~~sy~l~-----GlyGiAiAa~GMLs 491 (766)
+|+++|||||||+||||||||++|+||||||||+|+++||+||++|+++|+++++.||+++ |+||+|+|++||||
T Consensus 342 lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~i~~~i~~sy~l~~~~~~GlyGiaiAa~GMLs 421 (682)
T PF03030_consen 342 LIGFITEYYTSYSYRPVREIAEASETGPATNIISGLAVGMESTAIPVLVIAAAILISYYLGGGSGPGLYGIAIAAVGMLS 421 (682)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCchHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhhhheeccccccccCcchhHhhcCCChHHHHHhhhhhhcCCccccccchhhHHHHHHHHHHHHHHHHhhh------cc
Q 004230 492 TIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRA------GI 565 (766)
Q Consensus 492 t~~i~la~DayGPIaDNAgGIAEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~aLaLf~ay~~~~------~~ 565 (766)
|++++|++|+||||+|||||||||++||||||||||+|||+||||||+|||||||||+|+||+||++|++++ +.
T Consensus 422 t~g~~la~DayGPiaDNAgGIaEMs~l~~~VR~~td~LDa~GNTT~A~~KGfaIgSAaLaal~Lf~a~~~~~~~~~~~~~ 501 (682)
T PF03030_consen 422 TAGIVLAMDAYGPIADNAGGIAEMSGLPEEVREITDALDAVGNTTKAIGKGFAIGSAALAALALFAAYVQEVSLFNGTSI 501 (682)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T-
T ss_pred HhHHHHHhhccCcccccccchHHHcCCChhhhhhhHHHhhcCchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 56
Q ss_pred cccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhcch
Q 004230 566 TTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPP 645 (766)
Q Consensus 566 ~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~AlkeMi~P 645 (766)
..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||+|||||||+||||+|||||+||+|||||++|
T Consensus 502 ~~~~l~~p~vl~G~liG~~lpflfsa~~m~aVg~aA~~mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alkemi~P 581 (682)
T PF03030_consen 502 QSVDLTNPYVLIGLLIGAMLPFLFSALTMKAVGRAAGKMVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKEMILP 581 (682)
T ss_dssp S--BTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHHTHHH
T ss_pred ccCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhHHhhcccccccccCCCCCcccccccccccc
Q 004230 646 GALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTI 725 (766)
Q Consensus 646 gllavl~Pi~vG~~~G~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTV 725 (766)
+++++++|+++|++||+++++|+|+|++++|++||+||+|+||||||||||||+|++ ||||||+||||||||||
T Consensus 582 ~ll~v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGAWDNAKKyIE~g~~------ggKgS~aHkAaVvGDTV 655 (682)
T PF03030_consen 582 GLLAVLAPIVVGFLLGPEALGGLLMGATVSGILLAIFMANAGGAWDNAKKYIEQGNL------GGKGSEAHKAAVVGDTV 655 (682)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S------HHTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhccCc------CCCCChhhCCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999985 99999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHH
Q 004230 726 GDPLKDTSGPSLNILIKLMAVESLVFA 752 (766)
Q Consensus 726 GDP~KDTaGPslniLIKlm~~vslv~a 752 (766)
|||||||||||||||||||+++||||+
T Consensus 656 GDP~KDTaGPslnilIKl~~~vslv~a 682 (682)
T PF03030_consen 656 GDPFKDTAGPSLNILIKLMSIVSLVFA 682 (682)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCcchHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999986
No 5
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=100.00 E-value=1.2e-243 Score=2018.71 Aligned_cols=650 Identities=52% Similarity=0.844 Sum_probs=614.2
Q ss_pred hhhcCCCchhhhHHHHHHHHHHHHhHHHhHHhhhhhHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhh
Q 004230 60 EEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATA 139 (766)
Q Consensus 60 ~~~~g~~~~~~~~~m~eIa~~I~eGA~AfL~~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (766)
++|+| +||||||+++|||||++||+||||++++|+++++++|+.+.. ....+
T Consensus 3 ~~~~G------~~~m~~Ia~~I~eGA~afl~rqyk~i~~~~i~~~~~l~~~~~----------------------~~~~~ 54 (666)
T PRK00733 3 KQPAG------TERMQEIAGAIQEGAMAYLKRQYKTIAIFGVVVAVLLFLPAG----------------------GLFLG 54 (666)
T ss_pred CCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hHHHH
Confidence 35678 999999999999999999999999999999999998865411 11235
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhhhhhhhhHhhHHHHhhChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004230 140 AFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDD 219 (766)
Q Consensus 140 ~~~~i~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~~~~~al~vafr~G~VmGl~vvglgLl~l~~~~~~~~~~~~~~ 219 (766)
|++++||++|++||.++||+|||+|||+|+|||+|||+|++++|++|||+|+||||+|+||+|++++++|++|.... +
T Consensus 55 ~~~~~~Fl~Ga~~S~laG~iGM~iat~aN~Rta~aA~~~~~~al~vafr~G~vmGl~vvgl~Llgl~~~~~~~~~~~--~ 132 (666)
T PRK00733 55 WLTAVAFLVGAVFSALAGYIGMRVATRANVRTAQAARKGLGKALKVAFRGGAVMGLLVVGLGLLGVAGLYLVFGLGA--N 132 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccc--c
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999986322 2
Q ss_pred chhhhHHHHhhchhhHHHHHHHHHhcccccchhhccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhH
Q 004230 220 WEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSY 299 (766)
Q Consensus 220 ~~~~~~~i~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLfESy 299 (766)
..+.+++++||+||+|++|||+|+||||||||||||||||||||+|||||||||||||||||||||||||||||||||||
T Consensus 133 ~~~~~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlfESy 212 (666)
T PRK00733 133 PDDAPDALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMGADLFESY 212 (666)
T ss_pred chhhhHHHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCCCCCCCcchHHHhhcccchhhccccchHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCccccchhHHHHHHHHHHHHHHHHHHhhhhhhhccccccChHHHHHHHHHHHHHHHHHHHHHH
Q 004230 300 AESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIV 379 (766)
Q Consensus 300 ~~si~aamvlg~~~~~~~~~~~~~v~~Pl~i~a~gil~siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~ 379 (766)
+++++++|+|+.... ....++..++|||+++++|+++|++|++++| .++++||+|+||+|+|+|++++++++|++
T Consensus 213 ~~sivaamilg~~~~-~~~~~~~~v~~Pl~i~~~gii~Siig~~~v~----~~~~~~~~~aL~~g~~~s~~l~~v~~~~~ 287 (666)
T PRK00733 213 AVTIVAAMVLGAAAA-DAAFGVAGVLFPLLIAAVGIIASIIGIFFVR----LGKGGNPMKALNRGLIVTAVLSIVLTYFA 287 (666)
T ss_pred HHHHHHHHHHhhhcc-ccccchhHHHHHHHHHHHHHHHHHHHHeeEE----eCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997321 1223456799999999999999999999964 56668999999999999999999999999
Q ss_pred HHhhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhh
Q 004230 380 SWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSV 459 (766)
Q Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St 459 (766)
++|++|... .+.+||++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+|+++||+||
T Consensus 288 ~~~~l~~~~--------~~~~~~~~f~~~~iGlv~g~li~~iTeYyTs~~~~PVr~IA~as~tG~aTnIi~Gla~Gm~St 359 (666)
T PRK00733 288 TYWLLGDGA--------DGFTWLNLFGAVLIGLVVGALIGLITEYYTSTEYRPVKEIAEASRTGPATNIISGLAVGMEST 359 (666)
T ss_pred HHHHhcccc--------cccccHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence 999987421 235678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhheeccccccccCcchhHhhcCCChHHHHHhhhhhhcCCc
Q 004230 460 IIPIFAIAVSIFVSFSF----AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNT 535 (766)
Q Consensus 460 ~~pvl~i~~ai~~sy~l----~GlyGiAiAa~GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~~VR~~tD~LDa~GNT 535 (766)
++|+++|+++++.||++ +|+||+++|++|||||++++|++|+||||+|||||||||++||||||+|||+||++|||
T Consensus 360 ~~pvl~i~~ai~~sy~l~~~~~GlyGia~Aa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNT 439 (666)
T PRK00733 360 ALPVLVIVAAILGAYLLGMAGAGLYGIALAAVGMLSTAGIIVAVDAYGPITDNAGGIAEMAGLPPEVRKITDALDAVGNT 439 (666)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHhhheeeccccCccchHHHcCCChhHhhhChHhHhcccc
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhhh-------cccccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 004230 536 TAAIGKGFAIGSAALVSLALFGAFVSRA-------GITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEV 608 (766)
Q Consensus 536 TaAi~KGfAIGSAaL~aLaLf~ay~~~~-------~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EV 608 (766)
|||++||||||||+|+||+||++|+++. +...+|+.||+|++|+|+|+|+|||||+++|+||+|+|++|||||
T Consensus 440 T~A~~KGfaIGSAaLaal~Lf~ay~~~~~~~~~~~~~~~~~l~~p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~EV 519 (666)
T PRK00733 440 TKAVTKGFAIGSAALAALALFAAYIDELAGLLGGGGILSLDLSNPYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEEV 519 (666)
T ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 466799999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcccc
Q 004230 609 RRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGG 688 (766)
Q Consensus 609 RRQFreipGi~eg~~kPdY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~~G~~al~G~L~G~~vsG~~~Ai~m~NaGG 688 (766)
||||||+||||||++||||+||||||||+||||||+|+++++++|+++|+++|+++++|+|+|++++|++||+||+|+||
T Consensus 520 RrQFre~pGi~eg~~kPdY~~cV~I~T~~AlkeMi~P~ll~v~~Pi~vG~~lG~~al~G~L~G~~vsG~~lAi~m~NaGG 599 (666)
T PRK00733 520 RRQFREIPGIMEGTAKPDYARCVDISTKAALKEMILPGLLAVLAPIAVGFLLGPEALGGLLAGAIVTGLLLAIFMANAGG 599 (666)
T ss_pred HHHHhcCcccccCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHhhcccccccccCCCCCccccccccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 004230 689 AWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATH 758 (766)
Q Consensus 689 AWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDP~KDTaGPslniLIKlm~~vslv~ap~~~~~ 758 (766)
||||||||||+|++ ||||||+|||||||||||||||||||||||||||+|++|||||+|+|...
T Consensus 600 AWDNAKKyIE~g~~------gGKgS~aHkAaVvGDTVGDPfKDTaGPslnilIKl~~~vslv~ap~~~~~ 663 (666)
T PRK00733 600 AWDNAKKYIEDGNH------GGKGSEAHKAAVVGDTVGDPFKDTAGPALNPLIKLMNIVALLIAPLLVHL 663 (666)
T ss_pred hHHHHHHHHhcCCC------CCCCcHHHhccccCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999985 89999999999999999999999999999999999999999999999864
No 6
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=3.8e-238 Score=1905.70 Aligned_cols=679 Identities=48% Similarity=0.768 Sum_probs=635.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhhHHHHHHHHHHHHhHHHhHH
Q 004230 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (766)
Q Consensus 11 ~~~~~~~~~~l~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~g~~~~~~~~~m~eIa~~I~eGA~AfL~ 90 (766)
..++.+.|++++++||.|.++||.|. |+| |||||||+.+|||||++||+
T Consensus 5 ~~~l~i~~gl~sv~~A~~~~~sVl~~-------------------------~~G------n~rm~eIa~aIreGA~ayL~ 53 (703)
T COG3808 5 VLYLAIACGLLSVLYAAWAAKSVLRA-------------------------DAG------NERMKEIAAAIREGAMAYLA 53 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------cCC------cHHHHHHHHHHHHhHHHHHH
Confidence 45677899999999999999999883 457 99999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhHhhhhhhhhhHh
Q 004230 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (766)
Q Consensus 91 ~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Fl~Ga~~S~laG~iGM~vAt~aN~R 170 (766)
||||+|+++.+++++++.+++.. |.++++|++|++.|..|||+||+++||+|+|
T Consensus 54 rqy~tiavv~ivva~ll~~~l~~--------------------------~~ta~~Fl~GAv~S~~AG~~GM~vstrAN~R 107 (703)
T COG3808 54 RQYKTIAVVGIVVAILLAWFLLS--------------------------WLTAIGFLLGAVLSAAAGFAGMHVSTRANVR 107 (703)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHhhhcccceeeeehhhhH
Confidence 99999999999999888776531 5799999999999999999999999999999
Q ss_pred hHHHHhhChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCC--CchhhhHHHHhhchhhHHHHHHHHHhcccc
Q 004230 171 TTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD--DWEGLFEAITGYGLGGSSMALFGRVGGGIY 248 (766)
Q Consensus 171 ta~aA~~~~~~al~vafr~G~VmGl~vvglgLl~l~~~~~~~~~~~~~--~~~~~~~~i~gfg~GaS~iALFaRvGGGIy 248 (766)
||+||++++.++|++|||+|+|||++|+||+||++++.|+++..+.+. +.+.....+++|+||||++++|+|+|||||
T Consensus 108 tAqAAs~~l~~al~vaf~sGaV~Gl~VaGlaLlg~s~~ylv~~~~~g~~~~~~~~i~~lv~~gfGaSlIslFaRvGGGIf 187 (703)
T COG3808 108 TAQAASTGLGKALDVAFKSGAVMGLSVAGLALLGLSLYYLVLTSVLGHEPNLRIVIDSLVGLGFGASLISLFARVGGGIF 187 (703)
T ss_pred HHHHHHhhhhhhhhhhcccCcchhhHHHHHHHHHHHhhhheeecccCCCcccchhhhhhhhhccchHHHHHHHHhcCcee
Confidence 999999999999999999999999999999999999999998765432 223456779999999999999999999999
Q ss_pred cchhhccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhcCCccccchhHHHH
Q 004230 249 TKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPL 328 (766)
Q Consensus 249 TKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLfESy~~si~aamvlg~~~~~~~~~~~~~v~~Pl 328 (766)
||+||||+|||||||+|||||||||||||||||||||||||||+|||||||+++++|+|+|+++...+.+.-...++|||
T Consensus 188 TKaADvgaDLVGKVEagIPEDDPRNpatIADNVGDNVGD~AGM~ADLfEsYvvtvvAtm~Laai~f~~~~~~~~~ilyPl 267 (703)
T COG3808 188 TKAADVGADLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFESYVVTVVATMVLAAIFFLGTETIEAVILYPL 267 (703)
T ss_pred cchhhcccccccccccCCCCCCCCCccccccccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986543332334689999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHH
Q 004230 329 LISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCV 408 (766)
Q Consensus 329 ~i~a~gil~siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 408 (766)
.+.+++|++|++|+||+| .++++++|.+|++++|.+.+++++++++.++.++..+ .... ...++..+++|.|.
T Consensus 268 ~i~a~~i~~Si~gtffVk----~~~~~~i~~al~~gl~~t~~Lsvv~~~~~t~~l~g~~--~~~v-~g~~~~~~~lf~~~ 340 (703)
T COG3808 268 AICAVGIITSIIGTFFVK----LGKSGSIMGALYKGLIATGILSVVALAFVTSFLLGGT--IGTV-AGMSIGAINLFFCG 340 (703)
T ss_pred HHHHHHHHHHHHhheEEE----eCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccc-ccccccchhhHHHH
Confidence 999999999999999964 6788999999999999999999999999999987521 1111 12345568899999
Q ss_pred HHHHHHHHHHHHHhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004230 409 AVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALG 488 (766)
Q Consensus 409 ~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~pvl~i~~ai~~sy~l~GlyGiAiAa~G 488 (766)
++|++++.+|+++||||||++|||||+|||+|.|||+||||+||++|||||++|.++|.++|+.+|+++|+||+|+|++|
T Consensus 341 ~~Glv~~~lIv~iTeyYT~t~~rPv~~ia~as~tG~~tnii~GlavgleSt~~P~iviv~gIi~~~~~~GLyG~AIAa~~ 420 (703)
T COG3808 341 VIGLVVTALIVVITEYYTSTNYRPVNSIAQASVTGHGTNIIQGLAVGLESTALPAIVIVIGIIITYQLAGLYGTAIAAVG 420 (703)
T ss_pred HHHHHHHHHheeeeeeeccCCcchHHHHHHhhccCcchhhhhhhhhhhhhccccHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhheeccccccccCcchhHhhcCCChHHHHHhhhhhhcCCccccccchhhHHHHHHHHHHHHHHHHhhhc----
Q 004230 489 MLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAG---- 564 (766)
Q Consensus 489 MLst~~i~la~DayGPIaDNAgGIAEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~aLaLf~ay~~~~~---- 564 (766)
||++.+++++.|+|||++|||||||||++||||||++||.||++||||||+|||||||||+|+||+||++|..+..
T Consensus 421 ML~~agmiva~DayGPVtDNAGGIaEMa~LppEVR~~TD~LDAVGNTTkAvtKGyAIGSA~l~AL~LFAaY~~~~~~~a~ 500 (703)
T COG3808 421 MLSTAGMIVALDAYGPVTDNAGGIAEMAGLPPEVRKITDALDAVGNTTKAVTKGYAIGSAALGALVLFAAYSFDLKYFAA 500 (703)
T ss_pred HHHHhheEEEeeccCCcccCccchHHHcCCCHHHHHhhHHHHhccchhhhhhcccchhHHHHHHHHHHHHHHHHhhhHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ------------ccccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHH
Q 004230 565 ------------ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVK 632 (766)
Q Consensus 565 ------------~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPdY~~cV~ 632 (766)
...+|+.||+|+.|+++|+++||+||+++|.||||||++|||||||||||+|||||||+||||+||||
T Consensus 501 ~g~~~~~~~~~~~~~~dl~np~VvaGl~~G~~lpylFs~~tmtAVgrAA~~vV~EVRRQfRE~PGimegk~kPdY~R~Vd 580 (703)
T COG3808 501 NGKPYPYFADMGALSLDLSNPYVVAGLLLGGLLPYLFSGITMTAVGRAAMEVVEEVRRQFREIPGIMEGKAKPDYGRCVD 580 (703)
T ss_pred cCCCCcccccccceeeecCChHHHHHHHHhhHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhCCccccCCcCCchhHHHH
Confidence 12489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcchhhHHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhHHhhcccccccccCCCC
Q 004230 633 ISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKG 712 (766)
Q Consensus 633 I~T~~AlkeMi~Pgllavl~Pi~vG~~~G~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~G~~~~~~~~ggKG 712 (766)
|.||+|||||+.|++++|++|+++|+++|+++|+|+|+|.+++|+++|++|+|+||||||||||||+||. +.++||
T Consensus 581 i~T~aAl~eMi~P~llavl~Plvvgli~G~~aLgg~L~G~iv~G~~~Ai~m~n~GGAWDNAKK~iE~G~~----~~~~KG 656 (703)
T COG3808 581 ILTKAALKEMIIPGLLAVLAPLVVGLILGFAALGGLLLGVIVNGLFVAISMANGGGAWDNAKKYIEDGNG----VGHKKG 656 (703)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHhhccCCCcchhhhhhhhcCCC----cCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999863 457899
Q ss_pred CccccccccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 004230 713 SEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFAT 757 (766)
Q Consensus 713 S~aHkAaVvGDTVGDP~KDTaGPslniLIKlm~~vslv~ap~~~~ 757 (766)
||+|||+|+|||||||||||+|||+|||||+||+||+++.|+|.+
T Consensus 657 se~HKAaV~GDTVGDP~KDTaGPalN~lIKi~niVall~~~v~~h 701 (703)
T COG3808 657 SEAHKAAVTGDTVGDPYKDTAGPALNPLIKIMNIVALLLLAVFAH 701 (703)
T ss_pred cccccccccCCCCCCcccccCCccccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999986
No 7
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=89.63 E-value=7.8 Score=45.43 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=41.6
Q ss_pred cccccchhhccccccchhccCCCCCCCC-CccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhcCCccccch
Q 004230 245 GGIYTKAADVGADLVGKVERNIPEDDPR-NPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTS 323 (766)
Q Consensus 245 GGIyTKAADVGADLVGKVEagIPEDDPR-NPavIADnVGDNVGD~AGmgADLfESy~~si~aamvlg~~~~~~~~~~~~~ 323 (766)
|++=++..-+..||- |||||| +++==-=..|||+| ++++.++.+.... ..+
T Consensus 132 Gl~K~NiS~llg~ly-------~~~DprrD~gFt~fY~~iNiG---------------sl~~p~i~~~~~~------~~g 183 (498)
T COG3104 132 GLFKPNISSLLGELY-------PKDDPRRDGGFTLFYMGINIG---------------SLIAPIITGLLAI------NYG 183 (498)
T ss_pred ccccccHHHHHHHhc-------CCCCcccCCCccEEEEEeehH---------------HHHHHHHHHHHHH------hhC
Confidence 555577777888885 999999 23221223444544 4445555444321 111
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004230 324 MLYPLLISSIGILVCLITTLFATDIF 349 (766)
Q Consensus 324 v~~Pl~i~a~gil~siig~~~~~~~~ 349 (766)
-..-+-++++|+..+++--.+-|+.+
T Consensus 184 ~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchh
Confidence 22233456677776666666555443
No 8
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=79.54 E-value=19 Score=43.82 Aligned_cols=148 Identities=16% Similarity=0.081 Sum_probs=84.8
Q ss_pred ccccccccccchhhhhhHHHHHHHHHHHHHhhhcCCccccch--hHHHHHHHHHHHHHHHHHHhhhhhhhccccccChHH
Q 004230 282 GDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTS--MLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEP 359 (766)
Q Consensus 282 GDNVGD~AGmgADLfESy~~si~aamvlg~~~~~~~~~~~~~--v~~Pl~i~a~gil~siig~~~~~~~~~~~~~~~~~~ 359 (766)
.|||||..|=.|--=--.-+|.+++++-+..+..... .... ..+-++-..+..+ .++.+++....+|.++++ .++
T Consensus 210 ADnVGDNVGD~AGmgADLFESy~~sivaamilg~~~~-~~~~~~~~~v~~Pl~i~~~-gii~Siig~~~v~~~~~~-~~~ 286 (682)
T PF03030_consen 210 ADNVGDNVGDVAGMGADLFESYVVSIVAAMILGSTLF-GTNGFNFSGVLFPLLIAAV-GIIASIIGIFFVRTKKGA-TSK 286 (682)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSH-HHHTT-HHHHTHHHHHHHH-HHHHHHHHHHHHHTT----SGG
T ss_pred HHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHh-cccccchhHHHHHHHHHHH-HHHHHHHheeEEEecCCc-ccc
Confidence 4899999998777444445677766664444432111 1111 1233344445554 566666766667766544 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCcchhHHHHh
Q 004230 360 SLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD 438 (766)
Q Consensus 360 aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~ 438 (766)
...+.+....+++.+...+..+++.. +.+ ..........++....=.+.|++.+.+-.++|.|.-.+-.+=.+
T Consensus 287 ~~~~aL~~g~~vs~~l~~i~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~iGl~~g~lI~~~TeYyTs~~~~PVr 359 (682)
T PF03030_consen 287 DPMKALRRGYIVSSILSIILFFFLTY--WLL----GFSFFGSGISWWGLFGCVLIGLVAGVLIGFITEYYTSYSYRPVR 359 (682)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHH--HHS----EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--HHH----hcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHH
Confidence 77788888888888877777665421 000 00001111246666666778999999999999885555444444
No 9
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=61.72 E-value=1.1e+02 Score=36.72 Aligned_cols=130 Identities=23% Similarity=0.289 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhhhhhhccccccChH------------HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccc
Q 004230 331 SSIGILVCLITTLFATDIFEVKAVKEIE------------PSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKV 398 (766)
Q Consensus 331 ~a~gil~siig~~~~~~~~~~~~~~~~~------------~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~~~~~~ 398 (766)
-.+|+++-+...+..+...+....++-| .=|+||+-.-.++.++..+.+.|++.
T Consensus 10 i~~gl~sv~~A~~~~~sVl~~~~Gn~rm~eIa~aIreGA~ayL~rqy~tiavv~ivva~ll~~~l~-------------- 75 (703)
T COG3808 10 IACGLLSVLYAAWAAKSVLRADAGNERMKEIAAAIREGAMAYLARQYKTIAVVGIVVAILLAWFLL-------------- 75 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHh--------------
Confidence 3456666666666665444333322222 24667777777777666666665542
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 004230 399 VKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAA 478 (766)
Q Consensus 399 ~~~~~~~~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~pvl~i~~ai~~sy~l~G 478 (766)
.|.--.|.++|-+.+..-|++--+- |. |-=-+.||++++| +=.+|. ++|.-+.
T Consensus 76 --~~~ta~~Fl~GAv~S~~AG~~GM~v-st--rAN~RtAqAAs~~----l~~al~------------------vaf~sGa 128 (703)
T COG3808 76 --SWLTAIGFLLGAVLSAAAGFAGMHV-ST--RANVRTAQAASTG----LGKALD------------------VAFKSGA 128 (703)
T ss_pred --hhHHHHHHHHHHHHHhhhcccceee-ee--hhhhHHHHHHHhh----hhhhhh------------------hhcccCc
Confidence 2555567777777777767665543 22 4445678877765 223333 4455556
Q ss_pred HHHHHHHHHHHhhhhhhhheecc
Q 004230 479 MYGIAVAALGMLSTIATGLAIDA 501 (766)
Q Consensus 479 lyGiAiAa~GMLst~~i~la~Da 501 (766)
+-|...+.+++|....+-+-.-.
T Consensus 129 V~Gl~VaGlaLlg~s~~ylv~~~ 151 (703)
T COG3808 129 VMGLSVAGLALLGLSLYYLVLTS 151 (703)
T ss_pred chhhHHHHHHHHHHHhhhheeec
Confidence 67777777777776655554444
No 10
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=59.48 E-value=1.5e+02 Score=28.14 Aligned_cols=102 Identities=20% Similarity=0.359 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHhhhcCCccccchhHHHHHHHHHHHHHHHHHHhhhhhhhccccccChHHHHHHHHHHHHHHHHHHHH
Q 004230 298 SYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIA 377 (766)
Q Consensus 298 Sy~~si~aamvlg~~~~~~~~~~~~~v~~Pl~i~a~gil~siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~il~~i~~~ 377 (766)
+|..+.+..++++....+ .+...-.+|..+..+.++++.+|.+..-++ .+ +|-+-.|..+..+... ..+
T Consensus 14 ~~~~tl~~~l~~a~ll~~---~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~--~~-----~kG~l~G~~~Gl~y~~-il~ 82 (116)
T PF12670_consen 14 AYIITLILLLLLALLLYF---TSLSESILPWLVVIIYILSVFIGGFYAGRK--AG-----SKGWLHGLLVGLLYFL-ILL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--Hc-----cchHHHHHHHHHHHHH-HHH
Confidence 444555555555544322 233456788888899999999999886421 12 2455556555444333 233
Q ss_pred HHHHhhcCccccccccccccccchhHHHHHHHHHHHHHHH
Q 004230 378 IVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLI 417 (766)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~g~l 417 (766)
.++....++... ......+...|.+.|.+.|++
T Consensus 83 lis~~~~~~~~~-------~~~~~~~~~~~~~~G~lGG~l 115 (116)
T PF12670_consen 83 LISFLFGPGPFS-------GSSQLLKLLLCLLAGALGGML 115 (116)
T ss_pred HHHHHHccCcch-------HHHHHHHHHHHHHHHHHHhhc
Confidence 444444332111 011234677888888887753
No 11
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=58.99 E-value=83 Score=39.45 Aligned_cols=93 Identities=19% Similarity=0.308 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhhhhhheeccccccccCcchhHhhcCCChHHHHHhhhhh
Q 004230 457 KSVIIPIFAIAVSIFVSFSFAAMYGIA------VAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALD 530 (766)
Q Consensus 457 ~St~~pvl~i~~ai~~sy~l~GlyGiA------iAa~GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~~VR~~tD~LD 530 (766)
...++|++.+.+++..++.+.+++|.. ..+..++..+.+.+++|- +|-=++..-||.|+--|.-|
T Consensus 198 ~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy---------~I~lv~r~~ee~~~g~~~~~ 268 (910)
T TIGR00833 198 ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTDY---------AVFLTGRYHEERRKGESLEE 268 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCCHHH
Confidence 345677777777777777666666643 233334444555556552 44444445455555556667
Q ss_pred hcCCccccccchhhHHHHHHHHHHHHHHHH
Q 004230 531 AAGNTTAAIGKGFAIGSAALVSLALFGAFV 560 (766)
Q Consensus 531 a~GNTTaAi~KGfAIGSAaL~aLaLf~ay~ 560 (766)
|+-.+.+-+++. |-.++++..+-|.++.
T Consensus 269 Av~~a~~~~g~~--I~~s~lT~~~gf~~l~ 296 (910)
T TIGR00833 269 AAAEALRGTGKA--ILGSALTVAVAFLALS 296 (910)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 777766666554 4455555555555443
No 12
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=58.04 E-value=2.6e+02 Score=30.74 Aligned_cols=100 Identities=23% Similarity=0.450 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccc--ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHH
Q 004230 330 ISSIGILVCLITTLFATDIFEVKAVK--EIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLC 407 (766)
Q Consensus 330 i~a~gil~siig~~~~~~~~~~~~~~--~~~~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 407 (766)
+...+++.-++|..+... +.++++ +-.+..+|++.. .+++.++... |..+|+.+. .+.|..+..
T Consensus 105 ~G~~Al~liiiGv~lts~--~~~~~~~~~~~~~~~kgi~~-Ll~stigy~~--Y~~~~~~~~---------~~~~~~~lP 170 (269)
T PF06800_consen 105 IGFLALVLIIIGVILTSY--QDKKSDKSSSKSNMKKGILA-LLISTIGYWI--YSVIPKAFH---------VSGWSAFLP 170 (269)
T ss_pred HHHHHHHHHHHHHHHhcc--ccccccccccccchhhHHHH-HHHHHHHHHH--HHHHHHhcC---------CChhHhHHH
Confidence 444566777788877532 222222 224567777663 4555554333 344454322 345888888
Q ss_pred HHHHHHHHHHHHHHhhhcccCCcchhHHHHhhcccCchhHHHHHhhhh
Q 004230 408 VAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALG 455 (766)
Q Consensus 408 ~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~G 455 (766)
-.+|++.+.++-..-+ ++|.++ + + +.-|++.|+--+
T Consensus 171 qaiGm~i~a~i~~~~~------~~~~~~--k--~--~~~nil~G~~w~ 206 (269)
T PF06800_consen 171 QAIGMLIGAFIFNLFS------KKPFFE--K--K--SWKNILTGLIWG 206 (269)
T ss_pred HHHHHHHHHHHHhhcc------cccccc--c--c--hHHhhHHHHHHH
Confidence 8999987655544322 233332 1 1 356899998644
No 13
>PRK11677 hypothetical protein; Provisional
Probab=52.38 E-value=17 Score=35.81 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcchhHHHH
Q 004230 405 FLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVA 437 (766)
Q Consensus 405 ~~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA 437 (766)
|...++|+++|++||++.-.||+.+.+--+++-
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le 35 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQ 35 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH
Confidence 467789999999999999999988765544443
No 14
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=49.18 E-value=55 Score=36.36 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhc----cc--ccccC--ChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q 004230 543 FAIGSAALVSLALFGAFVSRAG----IT--TVDVL--TPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNT 614 (766)
Q Consensus 543 fAIGSAaL~aLaLf~ay~~~~~----~~--~~~l~--~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFre 614 (766)
+=-+|+.+.-...++.+..... .. -.+.. ++....+.++=..+.++||-+-. .++-...|+-|+.|+|=.-
T Consensus 202 iifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~~~~~~~~~~~y~~~~~~li~~Fs~~~~-~~~~~p~~iA~~lkk~g~~ 280 (346)
T PF00344_consen 202 IIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAYYFSQNLNSPLYIIFYLILIILFSYFFS-FININPKDIAENLKKSGDY 280 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHHHTSSSHHHHHHHHHHHHHHHHHHHHHH-TSSSHHHHHHHHCHCTTSS
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHhCCE
Confidence 4455677777777776665432 11 13455 88899999999999999998866 8888888899999999889
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHHHhh
Q 004230 615 IPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF 660 (766)
Q Consensus 615 ipGi~eg~~kPdY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~~ 660 (766)
|||+..|++..+| --++..+.++-.-+.-++++ ..|.+++...
T Consensus 281 I~GirpG~~T~~y--L~~~i~~~~~~G~~~l~~ia-~~p~~~~~~~ 323 (346)
T PF00344_consen 281 IPGIRPGKPTEKY--LNKVIPRLSFLGALFLALIA-VLPLIFGLFG 323 (346)
T ss_dssp SSTCTTSCHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHTTSS
T ss_pred eCCCCCChhHHHH--HHHHHHHHhhhhHHHHHHHH-HHHHHHHHHc
Confidence 9999888555554 22334444444444455555 4566666654
No 15
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=48.08 E-value=1.8e+02 Score=35.80 Aligned_cols=143 Identities=22% Similarity=0.361 Sum_probs=87.4
Q ss_pred CChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHH-HHhhhcchhhHH
Q 004230 571 LTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDA-SIKEMIPPGALV 649 (766)
Q Consensus 571 ~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~-AlkeMi~Pglla 649 (766)
.++++-+++++|+..-.+=.-..|+.=-|+-.+.-+.-||- +.+..+++=|+ +.-.|.+.++-.
T Consensus 53 ~~~~~~~~Fl~Ga~~S~laG~iGM~iat~aN~Rta~aA~~~---------------~~~al~vafr~G~vmGl~vvgl~L 117 (666)
T PRK00733 53 LGWLTAVAFLVGAVFSALAGYIGMRVATRANVRTAQAARKG---------------LGKALKVAFRGGAVMGLLVVGLGL 117 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC---------------HHHHHHHHhhcccHHHHHHHHHHH
Confidence 45678889999999888888888887777666666655442 34455554332 223344333322
Q ss_pred HHhhHHHHHhhh----hhhHHHHhhHHHHHHHHHHHHhhcccchhhhhhhH-------HhhcccccccccCCCCCccccc
Q 004230 650 MLTPLIVGIFFG----VETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKY-------IEAGASEHARTLGPKGSEPHKA 718 (766)
Q Consensus 650 vl~Pi~vG~~~G----~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKy-------IE~G~~~~~~~~ggKGS~aHkA 718 (766)
.-.-++ -+++. ..-..-.+.|--.-+=++|+|.--+||=|-+|-.- +|.|-.| -|.+.-
T Consensus 118 lgl~~~-~~~~~~~~~~~~~~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPE---------DDPRNP 187 (666)
T PRK00733 118 LGVAGL-YLVFGLGANPDDAPDALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPE---------DDPRNP 187 (666)
T ss_pred HHHHHH-HHHHhccccchhhhHHHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCC---------CCCCCc
Confidence 211111 11122 11122223333333456899999999999877642 6776543 456678
Q ss_pred cccccccCCCCCCCCCchhH
Q 004230 719 AVIGDTIGDPLKDTSGPSLN 738 (766)
Q Consensus 719 aVvGDTVGDP~KDTaGPsln 738 (766)
+|+-|-|||=--|-+|+.=+
T Consensus 188 avIADnVGDNVGD~AGmgAD 207 (666)
T PRK00733 188 AVIADNVGDNVGDCAGMGAD 207 (666)
T ss_pred chHHHhhcccchhhccccch
Confidence 99999999999999999544
No 16
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=45.06 E-value=1.1e+02 Score=31.57 Aligned_cols=74 Identities=15% Similarity=0.290 Sum_probs=43.0
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhhHHHHh---hHHHHHHHHH
Q 004230 603 KMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVL---AGSLVSGVQI 679 (766)
Q Consensus 603 ~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~~G~~al~G~L---~G~~vsG~~~ 679 (766)
=+-|++|+++|+. .+-++++-++.+.+.+++.-+.-.+ ..+.+.+.=+++|...+-||- +-.+++|.+.
T Consensus 103 VifdRIre~~~~~-------~~~~~~~~~~~s~~~tl~r~i~t~~-ttll~~~~L~~~g~~~l~~Fa~~l~iGvi~~~~s 174 (189)
T PF02355_consen 103 VIFDRIREELRAS-------RGKSLREAINISIKQTLSRTIDTSL-TTLLAALILFFFGGGSLKGFALTLIIGVIIGTYS 174 (189)
T ss_dssp HHHHHHHHHHCC--------STS-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHhhhC-------CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3669999998763 3567888888888888876665333 333444444556766655543 3344446666
Q ss_pred HHHhh
Q 004230 680 AISAS 684 (766)
Q Consensus 680 Ai~m~ 684 (766)
+++.+
T Consensus 175 s~~ia 179 (189)
T PF02355_consen 175 SLFIA 179 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 17
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=43.86 E-value=6.2e+02 Score=30.37 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCcchhHHHHhh
Q 004230 404 LFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADS 439 (766)
Q Consensus 404 ~~~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~a 439 (766)
+....+.-++.|+..|+.+.-|++. |++.+.
T Consensus 300 IpiI~l~F~i~GivYG~~sG~iks~-----~Dv~~~ 330 (502)
T PF03806_consen 300 IPIIFLFFLIPGIVYGIASGTIKSD-----KDVVKM 330 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhceecCH-----HHHHHH
Confidence 3445555667888888888777665 666553
No 18
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=37.48 E-value=2.4e+02 Score=33.91 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhheeccccccccCcchhHhhcCCChHHHHHhhhhhhcCCccc
Q 004230 459 VIIPIFAIAVSIFVSFSFAAMYGIAVAALGM-LSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTA 537 (766)
Q Consensus 459 t~~pvl~i~~ai~~sy~l~GlyGiAiAa~GM-Lst~~i~la~DayGPIaDNAgGIAEMs~l~~~VR~~tD~LDa~GNTTa 537 (766)
+++|++.+.+++..++.+.+++|+.+--+.+ ...+.+.+++ |+ +|--++..-+|.++--|.-+++-++.+
T Consensus 220 ~~~~l~~~~~~~~~~~g~~~~~g~~l~~~~~~~~~l~lgi~v-------d~--~ihl~~r~~~~~~~g~~~~~ai~~a~~ 290 (719)
T TIGR00921 220 PLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGI-------DY--GIQTLNRYEEERDIGRAKGEAIVTAVR 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHhhhh-------hh--HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4667777777777777777777754332221 1112233333 33 355555444444444555666677777
Q ss_pred cccchhhHHHHHHHHHHHHHHH
Q 004230 538 AIGKGFAIGSAALVSLALFGAF 559 (766)
Q Consensus 538 Ai~KGfAIGSAaL~aLaLf~ay 559 (766)
-+++... .++++..+=|.++
T Consensus 291 ~~g~~i~--~t~~t~~~gf~~l 310 (719)
T TIGR00921 291 RTGRAVL--IALLTTSAGFAAL 310 (719)
T ss_pred hccHHHH--HHHHHHHHHHHHH
Confidence 7776443 3444444444444
No 19
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=37.36 E-value=3.1e+02 Score=33.21 Aligned_cols=87 Identities=10% Similarity=0.099 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhHHH-----hHHhhhhhHHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHH
Q 004230 71 VAKCADIQSAISEGATS-----FLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVS 145 (766)
Q Consensus 71 ~~~m~eIa~~I~eGA~A-----fL~~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 145 (766)
.+|.|||+-.---||.. -+.+|+-.+..+..++++++...+... +. +......+ ...+....+
T Consensus 705 ~~R~rEiai~kalGas~~~I~~~~l~E~~~l~~ig~~lg~~l~~~~~~~--l~---------~~~~~~~~-~~~~~~~~~ 772 (803)
T TIGR03434 705 AQRTREIGIRMALGAQRGDVLRLVLRQGLRLAAAGLAIGLAAALALARL--LA---------SLLFGVSP-TDPLTFAAV 772 (803)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------HHhccCCC-CCHHHHHHH
Confidence 67888888887778765 566777778777777777665433210 00 00000000 011233455
Q ss_pred HHHHHHHHHHhhhHhhhhhhhhhH
Q 004230 146 FLLGAITSVLSGFLGMKIATYANA 169 (766)
Q Consensus 146 Fl~Ga~~S~laG~iGM~vAt~aN~ 169 (766)
+++..+.+.+++++--|-+.|.|-
T Consensus 773 ~~~~~~i~ll~~~~pa~~a~~~~p 796 (803)
T TIGR03434 773 AALLLAVALLACYLPARRAARVDP 796 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCH
Confidence 666677788888887777766664
No 20
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=35.96 E-value=2e+02 Score=33.09 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhHHHhHHhhhhhHHHHHHHHHHHHHHHhhcccC---------cccCCCcccccccccccchhhhhhHHHH
Q 004230 74 CADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEG---------FSTKGQACTYDQQKMCKPALATAAFSTV 144 (766)
Q Consensus 74 m~eIa~~I~eGA~AfL~~qyk~i~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i 144 (766)
.|.+--.+--.---|...+||=+-...+++.+++..+....++ .+..++.++.+ .-...+.+..
T Consensus 220 ~k~~~~~~~il~~v~~ln~yrGvp~~vlv~~vl~~~~~fvt~rT~fGR~VyAiGGN~eAA~LS-------GInv~r~t~~ 292 (394)
T COG4214 220 LKLLVIAAIILGLVYVLNSYRGVPNPVLVLLVLLIVFTFVTTRTVFGRRVYAIGGNPEAARLS-------GINVERVTLL 292 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhhceeeeEEEEecCCHHHHHhc-------CCceeehhHH
Confidence 3333333333344678888987766666655555432111111 11111111111 1111134666
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhhhHhhHHHHhhChhHHHHhhccccchh
Q 004230 145 SFLLGAITSVLSGFLGMKIATYANARTTLEARKSVGKAFIVAFRSGAVM 193 (766)
Q Consensus 145 ~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~~~~~al~vafr~G~Vm 193 (766)
.|.. +..+|..-|+-.+.|-|+-|-.|-...--++..-||-||+.|
T Consensus 293 vF~~---mGvl~AiAgli~taRL~aatp~AG~g~ELdaIAA~fIGGtSl 338 (394)
T COG4214 293 VFVI---MGVLAAIAGLILTARLNAATPSAGTGFELDAIAACFIGGTSL 338 (394)
T ss_pred HHHH---HHHHHHHHHHHHHHHhhcCCcCCCcchhHHHHHHHHhccccc
Confidence 6654 445555566777888888766654444447888899887654
No 21
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=33.84 E-value=1e+02 Score=36.22 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=53.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHH
Q 004230 584 MLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVG 657 (766)
Q Consensus 584 ~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG 657 (766)
.+-|+|+.+.++.-|-.+.++-|..|+|=..|||+.+| ||--+.+.+..++.++-.-+.-++++++ |-++|
T Consensus 371 ~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~RpG--k~t~~yL~k~i~r~t~~Ga~~l~~ia~l-p~~~~ 441 (474)
T PTZ00219 371 FSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDS--SSMVRVLNRYIPTAASFGGMCIGALTIL-ADFLG 441 (474)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45567777777777778889999999999999999988 4445556677777777777777777764 44444
No 22
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=33.26 E-value=5.1e+02 Score=25.94 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004230 193 MGFLLAANGLLVLFIAINLF 212 (766)
Q Consensus 193 mGl~vvglgLl~l~~~~~~~ 212 (766)
.|+.++++|++...+.+++.
T Consensus 142 ~~i~~~glGlll~~~~~~l~ 161 (181)
T PF08006_consen 142 FGIGLFGLGLLLIVITFYLT 161 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777777666555443
No 23
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=32.25 E-value=1.1e+02 Score=29.79 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=15.3
Q ss_pred ChHHHHHHHHH-HHH-HHHHHHHHHHHHh
Q 004230 356 EIEPSLKKQLI-IST-VLMTVGIAIVSWI 382 (766)
Q Consensus 356 ~~~~aL~~g~~-~s~-il~~i~~~~~~~~ 382 (766)
+..|.+++++. +-+ +++++..++..|+
T Consensus 70 ~~~k~~~~qls~v~Nilvsv~~~~~~~~~ 98 (142)
T PF11712_consen 70 QELKSVKRQLSTVFNILVSVFAVFFAGWY 98 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888854 333 4444555555553
No 24
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=31.54 E-value=1.5e+02 Score=26.26 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhHHH----hHHhhhhhHHHHHHHHHHHHHHH
Q 004230 71 VAKCADIQSAISEGATS----FLFTEYQYVGVFMIAFAILIFVF 110 (766)
Q Consensus 71 ~~~m~eIa~~I~eGA~A----fL~~qyk~i~~~~~~~~~~l~~~ 110 (766)
+++|++-|+..+..|.. +..+.||+..+++.++.+++++.
T Consensus 40 t~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i 83 (89)
T PF00957_consen 40 TEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILII 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHH
Confidence 66777777777666654 56678888777777766665443
No 25
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=31.38 E-value=2.4e+02 Score=29.27 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcccCCcchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---
Q 004230 400 KNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSF--- 476 (766)
Q Consensus 400 ~~~~~~~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~pvl~i~~ai~~sy~l--- 476 (766)
.|..+|.=.++|.+.+++..+.. .+++....|.+ -.|++.|...|..-+++.+++++.+|..
T Consensus 18 Gwi~FW~QlvLgvVs~~iL~F~~-~~~~~~~~~~~--------------~~G~~~gl~~a~~gl~~l~~si~~~fry~Rl 82 (183)
T PF12263_consen 18 GWIGFWIQLVLGVVSAVILLFAN-LFSGRATSPNR--------------NPGLGIGLFLAICGLVALFFSIFWSFRYTRL 82 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hccccCCCCCc--------------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888887777654 34443333322 1567889999999999999999999843
Q ss_pred ---------------------------HHHHHHHHHHHHHhhhhhhhheec
Q 004230 477 ---------------------------AAMYGIAVAALGMLSTIATGLAID 500 (766)
Q Consensus 477 ---------------------------~GlyGiAiAa~GMLst~~i~la~D 500 (766)
..+-|..++-+|+-++.|..++=-
T Consensus 83 ar~L~~~~~~~~P~k~~~~~~l~~Gl~~nl~Gmllt~lG~~a~vG~L~ak~ 133 (183)
T PF12263_consen 83 ARRLRSPNPAKRPSKADVVRLLRIGLIINLVGMLLTLLGAQATVGTLVAKA 133 (183)
T ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 268899999999999999877543
No 26
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=28.69 E-value=40 Score=33.95 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.4
Q ss_pred HHHhhhhhhhheeccccccccC
Q 004230 487 LGMLSTIATGLAIDAYGPISDN 508 (766)
Q Consensus 487 ~GMLst~~i~la~DayGPIaDN 508 (766)
++||..+...+--|+||||.|.
T Consensus 49 ~~mL~lL~TS~lp~S~GpI~~~ 70 (149)
T PF12331_consen 49 ILMLNLLSTSVLPDSFGPITDD 70 (149)
T ss_pred HHHHHHHHhccCCCCcCCCCCC
Confidence 5899999999999999999995
No 27
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=28.54 E-value=3.7e+02 Score=30.82 Aligned_cols=21 Identities=33% Similarity=0.622 Sum_probs=13.9
Q ss_pred cccCChhHHHHHHhhhhHHHH
Q 004230 568 VDVLTPKVFIGLIVGAMLPYW 588 (766)
Q Consensus 568 ~~l~~p~Vl~GlliG~~lpfl 588 (766)
--+.-|..++|..+|..+=.+
T Consensus 319 GG~f~P~l~iGa~~G~~~g~~ 339 (418)
T PRK01610 319 GGVFTPTLFVGLAIGMLYGRS 339 (418)
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 346677777777777665444
No 28
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=28.31 E-value=3.3e+02 Score=31.87 Aligned_cols=122 Identities=18% Similarity=0.294 Sum_probs=78.0
Q ss_pred hhhhcCCccccccchhhHHHHHHHHHHHHHHHHhhhcc--------cccccCChhHHHHHHhhhhHHHHHHHHhHHHHHH
Q 004230 528 ALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGI--------TTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGS 599 (766)
Q Consensus 528 ~LDa~GNTTaAi~KGfAIGSAaL~aLaLf~ay~~~~~~--------~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~ 599 (766)
+++.+||-.. =-+|+.+.--++++.+...... ...+..+|...++.++=..+..+|+-+=..-+.+
T Consensus 263 Kln~agvIPv------Ifassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~~~~y~~~y~~lii~Fs~Fy~~i~~n 336 (436)
T COG0201 263 KLNYAGVIPV------IFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPGSPVYIALYVVLIIFFSYFYTEIQFN 336 (436)
T ss_pred EeeccCChHH------HHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555555443 2346666666666666652111 1245556888888888888888998877666666
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHHHh
Q 004230 600 AALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIF 659 (766)
Q Consensus 600 aA~~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~ 659 (766)
..++-|+.|+|=..|||+..|++..+| --++.+|-+.-.-+.-+++++ .|-+++..
T Consensus 337 -p~~~A~~lkksG~~IPGiRpg~~te~y--L~rvi~rlt~~Ga~~l~~iai-lp~l~~~~ 392 (436)
T COG0201 337 -PEEIAENLKKSGGFIPGIRPGKDTEKY--LNRVIPRLTFIGALFLGLIAI-LPELLGTA 392 (436)
T ss_pred -HHHHHHHHHHcCCcCCCcCCChhHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 889999999999999999988776666 223344444444444555554 34455443
No 29
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.93 E-value=96 Score=27.29 Aligned_cols=32 Identities=25% Similarity=0.592 Sum_probs=23.7
Q ss_pred HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 004230 575 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLME 620 (766)
Q Consensus 575 Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~e 620 (766)
+++++++|+..-|+++- ...++|++|+|-|=|
T Consensus 3 iilali~G~~~Gff~ar--------------~~~~k~l~~NPpine 34 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR--------------KYMEKQLKENPPINE 34 (64)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHCCCCCH
Confidence 67788888888777653 345689999987743
No 30
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=27.78 E-value=1.8e+02 Score=30.92 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=35.6
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHh------hHHHHHhhhhh---hHHHHhhHHH
Q 004230 603 KMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLT------PLIVGIFFGVE---TLSGVLAGSL 673 (766)
Q Consensus 603 ~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~AlkeMi~Pgllavl~------Pi~vG~~~G~~---al~G~L~G~~ 673 (766)
-++|.+||+.|+.+| .+..+++.-+++ |+..|.+...++ |+.. +|.+ .++=-+++++
T Consensus 170 vv~d~i~e~~~~~~~-------~~~~~a~~~a~~----~~~~~ii~ttltti~~flpl~~---~~g~~~~~~a~~~~~Gl 235 (246)
T TIGR00966 170 VVFDRIRENLRKYTR-------KTFTEVINLSIN----QTLSRTINTSLTTLLAVLALYV---FGGGVIKDFSLALLVGV 235 (246)
T ss_pred EEehHHHHHHhhccC-------CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHH
Confidence 356888887764322 256666665554 445555444433 3322 1222 2344456666
Q ss_pred HHHHHHHHHh
Q 004230 674 VSGVQIAISA 683 (766)
Q Consensus 674 vsG~~~Ai~m 683 (766)
+.|.++++|.
T Consensus 236 i~~t~~sl~i 245 (246)
T TIGR00966 236 IVGTYSSIFI 245 (246)
T ss_pred HHHHHHHHHh
Confidence 6677777664
No 31
>PRK10720 uracil transporter; Provisional
Probab=26.96 E-value=1e+03 Score=27.46 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004230 407 CVAVGLWAGLIIGFVTEY 424 (766)
Q Consensus 407 ~~~~Gl~~g~lI~~~TeY 424 (766)
++++|+++|.++.+...+
T Consensus 183 ~iLigIvvG~ila~~lG~ 200 (428)
T PRK10720 183 PILIGVLVGYALSFAMGM 200 (428)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 578888888888888765
No 32
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.17 E-value=1.9e+02 Score=28.28 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHhHHHh------HHhhh
Q 004230 71 VAKCADIQSAISEGATSF------LFTEY 93 (766)
Q Consensus 71 ~~~m~eIa~~I~eGA~Af------L~~qy 93 (766)
-+.+++=|+..++||..| |+|+|
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566688899999998 66766
No 33
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=26.16 E-value=4.7e+02 Score=32.46 Aligned_cols=141 Identities=20% Similarity=0.309 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhhhhhhHhhHHHHhhC---------------hhHHHHhhccccchhHHHHHHHHHHHHH
Q 004230 142 STVSFLLGAITSVLSGFLGMKIATYANARTTLEARKS---------------VGKAFIVAFRSGAVMGFLLAANGLLVLF 206 (766)
Q Consensus 142 ~~i~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~~---------------~~~al~vafr~G~VmGl~vvglgLl~l~ 206 (766)
+.+..++|+..-.+=.=+-|+.=.|+--|.-+..||- +++..+++=| .+.-.|.+-++-.+..-
T Consensus 511 vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~-aAlkeMi~Pgll~i~~P 589 (697)
T TIGR01104 511 VFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD-ASIKEMIPPGLLVMLTP 589 (697)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHH-HHHHhhhhhhHHHHHHH
Confidence 4455566666555555556666666655555555432 2344444443 23334443322111111
Q ss_pred HHH-HHHhhhcCCCchhhhHHHHhhchhhHHHHHHHHHhcccccchhhccccccchhccC--------CCCCCCCCcccc
Q 004230 207 IAI-NLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERN--------IPEDDPRNPAVI 277 (766)
Q Consensus 207 ~~~-~~~~~~~~~~~~~~~~~i~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEag--------IPEDDPRNPavI 277 (766)
++. +++ +. +-+--.+.|.-.-+-+.|+|.--+||-+-+|=.. +|.| -+-.|.+..+|+
T Consensus 590 i~vG~~~----G~--~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~G~~~~~~~ggKGS~aHkAaVv 656 (697)
T TIGR01104 590 LIVGFLF----GV--ETLSGVLAGVLVSGVQIAISASNTGGAWDNAKKY-------IEAGSEHARSLGPKGSEAHKAAVI 656 (697)
T ss_pred HHHHHhc----cH--HHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHH-------HhcCccccccCCCCCcHHhhcccc
Confidence 111 112 11 1111233343444457899999999999877654 5665 355667888999
Q ss_pred ccccccccccccccchhhh
Q 004230 278 ADNVGDNVGDIAGMGSDLF 296 (766)
Q Consensus 278 ADnVGDNVGD~AGmgADLf 296 (766)
.|.|||=-=|-+|..-+.-
T Consensus 657 GDTVGDPfKDTaGPslNil 675 (697)
T TIGR01104 657 GDTVGDPLKDTSGPSLNIL 675 (697)
T ss_pred CCCCCCCccccccchHhHH
Confidence 9999999999999987754
No 34
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=25.10 E-value=6.7e+02 Score=28.35 Aligned_cols=78 Identities=12% Similarity=0.012 Sum_probs=42.9
Q ss_pred ChHHHHHHH--------HHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 004230 356 EIEPSLKKQ--------LIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTS 427 (766)
Q Consensus 356 ~~~~aL~~g--------~~~s~il~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~g~lI~~~TeYyTs 427 (766)
+.+..+.|| ..+|++++....-++.+++......... ...-+.+..-+++=++.|.++-...+++++
T Consensus 115 ~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~-----~~m~~~i~~~vllP~~LG~~~r~~~~~~~~ 189 (319)
T COG0385 115 NAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDV-----GGMFLSILLQVLLPFVLGQLLRPLLPKWVE 189 (319)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 4567777777777777776642111100 001234555566666677777777777766
Q ss_pred CCcchhHHHHh
Q 004230 428 NAYSPVQDVAD 438 (766)
Q Consensus 428 ~~y~PVr~IA~ 438 (766)
...+....++.
T Consensus 190 ~~~~~l~~vs~ 200 (319)
T COG0385 190 RLKKALPPVSV 200 (319)
T ss_pred HHhhhcchhhH
Confidence 54444444444
No 35
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=24.53 E-value=74 Score=30.28 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHH-HHHHHHH------HhhhcccCCcchhHHH
Q 004230 401 NWQLFLCVAVGLW-AGLIIGF------VTEYYTSNAYSPVQDV 436 (766)
Q Consensus 401 ~~~~~~~~~~Gl~-~g~lI~~------~TeYyTs~~y~PVr~I 436 (766)
.|.+..+++++.+ .++||.+ .-+|+.||+|+|.+|-
T Consensus 16 sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPET 58 (102)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCcc
Confidence 4666666555544 7777765 4689999999999876
No 36
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.44 E-value=93 Score=30.95 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCcch
Q 004230 404 LFLCVAVGLWAGLIIGFVTEYYTSNAYSP 432 (766)
Q Consensus 404 ~~~~~~~Gl~~g~lI~~~TeYyTs~~y~P 432 (766)
.|...++|+++|++||++.--+|-.++|.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 56788899999999999999898887776
No 37
>PRK01844 hypothetical protein; Provisional
Probab=24.40 E-value=1.2e+02 Score=27.33 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhc
Q 004230 575 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMI 643 (766)
Q Consensus 575 Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~AlkeMi 643 (766)
+++++++|+..-|+++=-.++ +|+||+|-| +...+|+|.
T Consensus 10 ~I~~li~G~~~Gff~ark~~~--------------k~lk~NPpi----------------ne~mir~Mm 48 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMM--------------NYLQKNPPI----------------NEQMLKMMM 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHCCCC----------------CHHHHHHHH
No 38
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=24.40 E-value=7.8e+02 Score=28.31 Aligned_cols=109 Identities=20% Similarity=0.322 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhc--------ccccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccC
Q 004230 544 AIGSAALVSLALFGAFVSRAG--------ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTI 615 (766)
Q Consensus 544 AIGSAaL~aLaLf~ay~~~~~--------~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFrei 615 (766)
=-+|+.+.....++.+..... ...++..+|. +.++=..+.++||-+-.. ++-...|+-|..|+|=..|
T Consensus 257 Ifassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~y~~lii~Fs~f~~~-~~~~p~~iA~~lkk~g~~I 332 (410)
T TIGR00967 257 IFASALLSNPATISQFLNSNQGGAWFLNPILSLSLSDPI---GAILYLILIIFFSFFYVE-LQLNPEDMAKNLKKQGMFI 332 (410)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCcccH---HHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHCCCcC
Confidence 335677766666665542211 0114445663 333336777778777766 8888899999999999999
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHHHhhHHHHHh
Q 004230 616 PGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIF 659 (766)
Q Consensus 616 pGi~eg~~kPdY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~ 659 (766)
||+..||+..+| --++..+.+.-.-+.-+++++ .|-+++..
T Consensus 333 pGiRpG~~T~~y--L~~~i~~~t~~Gai~l~~ia~-~p~l~~~~ 373 (410)
T TIGR00967 333 PGIRPGKMTEKY--LKRVIPRLTFVGSLFLGLIAL-LPNFLGAI 373 (410)
T ss_pred CCcCCChhHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 999999665565 223344444444445555554 45555543
No 39
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.76 E-value=95 Score=30.10 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhc
Q 004230 402 WQLFLCVAVGLWAGLIIGFVTEYY 425 (766)
Q Consensus 402 ~~~~~~~~~Gl~~g~lI~~~TeYy 425 (766)
+.+..=.+.|+++|++|||++++|
T Consensus 46 ~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555555
No 40
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.63 E-value=76 Score=30.73 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhcccCCcc
Q 004230 408 VAVGLWAGLIIGFVTEYYTSNAYS 431 (766)
Q Consensus 408 ~~~Gl~~g~lI~~~TeYyTs~~y~ 431 (766)
+++|+++|++||++.-.+++.+.+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~ 25 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQ 25 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchh
Confidence 467888888888888888877654
No 41
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=23.24 E-value=76 Score=28.03 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHH
Q 004230 601 ALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKIS 634 (766)
Q Consensus 601 A~~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~ 634 (766)
.++..||+|+-+||..-++.=..|||.+.-..++
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arKP~~eEy~~~a 37 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARKPDWEEYSKIA 37 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3556677777777655555556799888777666
No 42
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=23.05 E-value=4.8e+02 Score=30.14 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhcccc--ccChH----HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccc
Q 004230 323 SMLYPLLISSIGILVCLITTLFATDIFEVKA--VKEIE----PSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQ 396 (766)
Q Consensus 323 ~v~~Pl~i~a~gil~siig~~~~~~~~~~~~--~~~~~----~aL~~g~~~s~il~~i~~~~~~~~~l~~~~~~~~~~~~ 396 (766)
.++.|+++..-|=..+...+..+|... .++ .++.. |-+..++..+.++..+...+ .+++.. .+.+ |
T Consensus 316 ~~~iP~i~~~~Gn~G~qs~~~~~r~l~-~g~i~~~~~~~~~~~e~~v~~~~g~~~g~~~~~~-~~~~~~-~~~~---~-- 387 (449)
T TIGR00400 316 ANFIPLLMDTSGNAGSQSSAVVIRGLA-LETVKVKDFFKVILREICVSILVGAILASVNFLR-IVFFQG-KLLI---A-- 387 (449)
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHh-cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcC-CchH---H--
Confidence 367899988888777777777666432 221 22333 34444444444444433333 332211 1111 0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 004230 397 KVVKNWQLFLCVAVGLWAGLIIGFVTEYY 425 (766)
Q Consensus 397 ~~~~~~~~~~~~~~Gl~~g~lI~~~TeYy 425 (766)
..-....+.+++++.+.|.++.++...+
T Consensus 388 -~~v~~~~~~~~~~~~~~G~~lp~~~~k~ 415 (449)
T TIGR00400 388 -FVVSSSLFVSLTVAKILGGLLPIVAKLL 415 (449)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0112346677777888888888887765
No 43
>PRK00523 hypothetical protein; Provisional
Probab=22.99 E-value=1.3e+02 Score=27.04 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhc
Q 004230 575 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMI 643 (766)
Q Consensus 575 Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~AlkeMi 643 (766)
+++++++|+..-|+++--.|+ +|+||+|-| |...+|+|.
T Consensus 11 ~i~~li~G~~~Gffiark~~~--------------k~l~~NPpi----------------ne~mir~M~ 49 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFK--------------KQIRENPPI----------------TENMIRAMY 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHCcCC----------------CHHHHHHHH
No 44
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.78 E-value=2.8e+02 Score=29.45 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=26.4
Q ss_pred chhhhHHHHHHHHHHHHhHHHhHHhhhhhHHHH
Q 004230 67 DQSVVAKCADIQSAISEGATSFLFTEYQYVGVF 99 (766)
Q Consensus 67 ~~~~~~~m~eIa~~I~eGA~AfL~~qyk~i~~~ 99 (766)
|.+.-+|+||.-..+++==+.+++.|+|-+...
T Consensus 96 d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~~ 128 (201)
T COG1422 96 DMKKLKKLQEKQMEMMDDQRELMKMQFKPMLYI 128 (201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 444578888888889999999999999955443
No 45
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=22.07 E-value=7.5e+02 Score=30.11 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=47.8
Q ss_pred cccccccCcchhHhhcCCChH-HHHHhhhhhhcCCccccccch-hhHHHHHHHHHHHHHHHHhhhcccccccCChhHHHH
Q 004230 501 AYGPISDNAGGIAEMAGMSHR-IRERTDALDAAGNTTAAIGKG-FAIGSAALVSLALFGAFVSRAGITTVDVLTPKVFIG 578 (766)
Q Consensus 501 ayGPIaDNAgGIAEMs~l~~~-VR~~tD~LDa~GNTTaAi~KG-fAIGSAaL~aLaLf~ay~~~~~~~~~~l~~p~Vl~G 578 (766)
+..||.|+ +-|. |-++ -.-+|+.|+..|= -+...|= =.|=.+..+++++.++ .+++|
T Consensus 369 am~PiMe~---VvkP--Lme~is~~iT~~L~~~GV-dke~Ae~iGsI~gaI~aAi~mvA~---------------~v~~~ 427 (593)
T PRK15374 369 ALNPIMEH---VLKP--LMELIGKAITKALEGLGV-DKKTAEMAGSIVGAIVAAIAMVAV---------------IVVVA 427 (593)
T ss_pred HHHHHHHH---HHHH--HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
Confidence 66777774 3222 1111 2456778888773 2222221 1233355666665554 24444
Q ss_pred HHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 004230 579 LIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQF 612 (766)
Q Consensus 579 lliG~~lpflFsal~m~aVg~aA~~mV~EVRRQF 612 (766)
...++.--.+++. .++.+|+.-.++++|.-||+
T Consensus 428 ~v~k~aa~Kl~~~-l~k~ig~~i~~~~~~~lk~~ 460 (593)
T PRK15374 428 VVGKGAAAKLGNA-LSKMMGETIKKLVPNVLKQL 460 (593)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4444444445544 45778888888888887665
No 46
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=21.92 E-value=37 Score=28.94 Aligned_cols=7 Identities=71% Similarity=1.426 Sum_probs=5.5
Q ss_pred CCCCCcc
Q 004230 269 DDPRNPA 275 (766)
Q Consensus 269 DDPRNPa 275 (766)
.|||||-
T Consensus 39 NDPRNP~ 45 (54)
T PF04911_consen 39 NDPRNPR 45 (54)
T ss_pred cCCCChh
Confidence 6899983
No 47
>COG1288 Predicted membrane protein [Function unknown]
Probab=20.83 E-value=4.3e+02 Score=31.34 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=22.0
Q ss_pred HHHHHHhHHHhHHhhhhhHHHHHHHHHHHHHHH
Q 004230 78 QSAISEGATSFLFTEYQYVGVFMIAFAILIFVF 110 (766)
Q Consensus 78 a~~I~eGA~AfL~~qyk~i~~~~~~~~~~l~~~ 110 (766)
.+.-+++.+.|=.|+--.+.+|..-+...++-.
T Consensus 261 f~~~~~~~~~Ft~~~klvL~lf~l~f~~mI~GV 293 (481)
T COG1288 261 FKVEDSGERPFTFRDKLVLLLFTLTFVIMIWGV 293 (481)
T ss_pred hhhccccccccchhhhHHHHHHHHHHHHHHHHh
Confidence 333344567788888888888777766666543
No 48
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=20.61 E-value=96 Score=34.34 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q 004230 593 TMKSVGSAALKMVEEVRRQFNTI 615 (766)
Q Consensus 593 ~m~aVg~aA~~mV~EVRRQFrei 615 (766)
.|.+|.+++..-++|+++|||..
T Consensus 22 ~m~~i~~G~~~ai~ECq~QF~~~ 44 (310)
T PF00110_consen 22 LMPSIAEGAKMAIEECQHQFRNR 44 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999999975
No 49
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=20.50 E-value=2.1e+02 Score=23.81 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004230 5 LLSELATEILVPVCAVVGIIFSLVQWFIVSR 35 (766)
Q Consensus 5 ~~s~~a~~~~~~~~~~l~l~~a~~~~~~v~~ 35 (766)
-++...+....+...+|+++.+..-|+|++|
T Consensus 14 ai~~a~t~i~~ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 14 AISAAKTDIATIGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777788899999999999999998
No 50
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=20.45 E-value=43 Score=41.01 Aligned_cols=16 Identities=56% Similarity=0.845 Sum_probs=14.1
Q ss_pred CCCCCCCCCccccccc
Q 004230 265 NIPEDDPRNPAVIADN 280 (766)
Q Consensus 265 gIPEDDPRNPavIADn 280 (766)
=|-||||||||=||..
T Consensus 794 ~I~DhDPR~paYIAtQ 809 (1004)
T KOG0793|consen 794 PIMDHDPRNPAYIATQ 809 (1004)
T ss_pred ccccCCCCccceeecc
Confidence 3789999999999876
No 51
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=20.30 E-value=1e+02 Score=33.33 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=45.5
Q ss_pred HHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhcchhhHHH
Q 004230 576 FIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVM 650 (766)
Q Consensus 576 l~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPdY~~cV~I~T~~AlkeMi~Pgllav 650 (766)
+.|.++|. +|++++.+..+.-+|+|++=+|+...+.--+. +++..+-..|.|+|+-+.|.+=..
T Consensus 129 i~GMiiGN---------sm~a~slal~r~~~~l~~~~~~ie~~LalGat--~~eA~~~~~r~ai~~al~P~i~~m 192 (250)
T PF03649_consen 129 IAGMIIGN---------SMNAVSLALERFYSELRERRDEIEALLALGAT--PREAVRPFIRRAIRAALIPTINSM 192 (250)
T ss_pred HHHHHHhh---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHhHhHHHhh
Confidence 45777776 57999999999999999997777655543233 344555556788888777766543
No 52
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=20.18 E-value=1e+03 Score=27.19 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 004230 596 SVGSAALKMVEEVRRQFN 613 (766)
Q Consensus 596 aVg~aA~~mV~EVRRQFr 613 (766)
.=||-.-++++|+|+-+-
T Consensus 211 ~RGRRGLdILn~iqk~~~ 228 (356)
T COG4956 211 NRGRRGLDILNEIQKEDP 228 (356)
T ss_pred hcccchhHHHHHHHhhCC
Confidence 335666789999988774
No 53
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.13 E-value=1.4e+02 Score=26.58 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhcc-CCCC
Q 004230 602 LKMVEEVRRQFNT-IPGL 618 (766)
Q Consensus 602 ~~mV~EVRRQFre-ipGi 618 (766)
+++.+|+-||+++ +|.+
T Consensus 8 ~r~L~eiEr~L~~~DP~f 25 (82)
T PF11239_consen 8 QRRLEEIERQLRADDPRF 25 (82)
T ss_pred HHHHHHHHHHHHhcCcHH
Confidence 5788999999964 4544
No 54
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=20.07 E-value=3.5e+02 Score=25.51 Aligned_cols=63 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHhHHhhhhhHHH--HHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhHhhh
Q 004230 86 TSFLFTEYQYVGV--FMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMK 162 (766)
Q Consensus 86 ~AfL~~qyk~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Fl~Ga~~S~laG~iGM~ 162 (766)
+.|+++-|.++.+ ++++.+.+++.++.+ .-.....+..|+ ....+||++|.+...--=...||
T Consensus 4 ~~~~~n~~S~vli~GiiLL~~aCIfAfidf--sK~~~~~~~~wR------------alSii~FI~giil~lG~~i~s~y 68 (92)
T PF05767_consen 4 MGFLSNYFSGVLIGGIILLIAACIFAFIDF--SKNTKPTDYTWR------------ALSIICFILGIILTLGIVIFSMY 68 (92)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhhh--ccCCCCchhHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Done!