Query 004230
Match_columns 766
No_of_seqs 144 out of 732
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 18:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004230.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004230hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d4sgbi_ g.69.1.1 (I:) Plant ch 23.1 11 0.00081 28.3 0.7 9 267-275 26-34 (51)
2 d1tiha_ g.69.1.1 (A:) Multidom 19.5 15 0.0011 27.7 0.8 10 267-276 27-36 (53)
3 d1pjua1 g.69.1.1 (A:16-74) Wou 13.7 23 0.0017 27.2 0.6 9 267-275 35-43 (59)
4 d2iuba2 f.17.3.1 (A:286-349) M 11.0 75 0.0055 23.8 2.9 20 737-756 2-21 (64)
5 d1jhfa1 a.4.5.2 (A:2-72) LexA 10.9 45 0.0033 25.8 1.5 25 417-441 10-35 (71)
6 d1jboa_ a.1.1.3 (A:) Phycocyan 10.5 94 0.0068 27.7 3.8 41 594-634 41-88 (162)
7 d3dwya1 a.29.2.1 (A:1084-1197) 10.0 30 0.0022 28.9 0.1 19 690-720 78-96 (114)
8 d3d7ca1 a.29.2.1 (A:731-832) G 9.9 30 0.0022 28.3 0.1 30 599-631 5-39 (102)
9 d1oyvi_ g.69.1.1 (I:) Wound-in 9.3 42 0.003 28.8 0.8 9 267-275 50-58 (116)
10 d1wjra_ b.34.9.3 (A:) Scm-like 8.7 39 0.0028 29.3 0.4 20 261-284 17-41 (127)
No 1
>d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]}
Probab=23.06 E-value=11 Score=28.34 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=7.4
Q ss_pred CCCCCCCcc
Q 004230 267 PEDDPRNPA 275 (766)
Q Consensus 267 PEDDPRNPa 275 (766)
-|.|||||-
T Consensus 26 GeSdp~npk 34 (51)
T d4sgbi_ 26 GQSDPKKPK 34 (51)
T ss_dssp CCBCTTSCC
T ss_pred CCCCCCCCC
Confidence 488999994
No 2
>d1tiha_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=19.48 E-value=15 Score=27.73 Aligned_cols=10 Identities=60% Similarity=1.019 Sum_probs=7.8
Q ss_pred CCCCCCCccc
Q 004230 267 PEDDPRNPAV 276 (766)
Q Consensus 267 PEDDPRNPav 276 (766)
-|.|||||-.
T Consensus 27 Gesdp~nPK~ 36 (53)
T d1tiha_ 27 GESDPRNPKA 36 (53)
T ss_dssp CCCCSSSSCC
T ss_pred CCCCCCCCCc
Confidence 4889999953
No 3
>d1pjua1 g.69.1.1 (A:16-74) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=13.68 E-value=23 Score=27.19 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.2
Q ss_pred CCCCCCCcc
Q 004230 267 PEDDPRNPA 275 (766)
Q Consensus 267 PEDDPRNPa 275 (766)
-|.|||||-
T Consensus 35 Gesdp~npk 43 (59)
T d1pjua1 35 GESDPKRPN 43 (59)
T ss_dssp CCBBTTBCC
T ss_pred CcCCCCCCC
Confidence 478999994
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=11.01 E-value=75 Score=23.83 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004230 737 LNILIKLMAVESLVFAPFFA 756 (766)
Q Consensus 737 lniLIKlm~~vslv~ap~~~ 756 (766)
.|-.+|.+++++.+|.|.-.
T Consensus 2 ~N~~mk~lT~it~iflP~t~ 21 (64)
T d2iuba2 2 TNEVMKVLTIIATIFMPLTF 21 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999654
No 5
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=10.93 E-value=45 Score=25.78 Aligned_cols=25 Identities=8% Similarity=0.316 Sum_probs=20.4
Q ss_pred HHHHHhhhcccCCcch-hHHHHhhcc
Q 004230 417 IIGFVTEYYTSNAYSP-VQDVADSCR 441 (766)
Q Consensus 417 lI~~~TeYyTs~~y~P-Vr~IA~as~ 441 (766)
+.-++.+||..+.|.| +|||+++..
T Consensus 10 vL~~I~~~~~~~G~~Ps~rei~~~~g 35 (71)
T d1jhfa1 10 VFDLIRDHISQTGMPPTRAEIAQRLG 35 (71)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcC
Confidence 3568899999999988 689998754
No 6
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=10.53 E-value=94 Score=27.73 Aligned_cols=41 Identities=12% Similarity=0.331 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHh-hccCCCCCC--CCCCC---C-hhhHHHHH
Q 004230 594 MKSVGSAALKMVEEVRRQ-FNTIPGLME--GTTKP---D-YATCVKIS 634 (766)
Q Consensus 594 m~aVg~aA~~mV~EVRRQ-FreipGi~e--g~~kP---d-Y~~cV~I~ 634 (766)
-+.....+.++|+|.+++ |++.|.+.+ |..-| + +++|.+=.
T Consensus 41 a~~L~~na~~IV~~A~~~l~~~~P~l~~~gG~~y~~~~~r~~~C~RD~ 88 (162)
T d1jboa_ 41 ARALTNNAQSLIDGAAQAVYQKFPYTTTMQGSQYASTPEGKAKCARDI 88 (162)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHCGGGGTSCSTTSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcCccCCCCccccccHHHHHHHHHHH
Confidence 355667789999998888 556898875 33333 2 57776543
No 7
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.99 E-value=30 Score=28.88 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=14.5
Q ss_pred hhhhhhHHhhcccccccccCCCCCccccccc
Q 004230 690 WDNAKKYIEAGASEHARTLGPKGSEPHKAAV 720 (766)
Q Consensus 690 WDNAKKyIE~G~~~~~~~~ggKGS~aHkAaV 720 (766)
|+||++|- +++|+.|+.|.
T Consensus 78 ~~Na~~yN------------~~~s~~~~~A~ 96 (114)
T d3dwya1 78 FNNAWLYN------------RKTSRVYKFCS 96 (114)
T ss_dssp HHHHHHHS------------CTTSHHHHHHH
T ss_pred HHHHHHHC------------CCCCHHHHHHH
Confidence 99999992 36788887663
No 8
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.86 E-value=30 Score=28.26 Aligned_cols=30 Identities=13% Similarity=0.390 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHh-----hccCCCCCCCCCCCChhhHH
Q 004230 599 SAALKMVEEVRRQ-----FNTIPGLMEGTTKPDYATCV 631 (766)
Q Consensus 599 ~aA~~mV~EVRRQ-----FreipGi~eg~~kPdY~~cV 631 (766)
++-.++++|++++ |++-| .-+.-|||.+-|
T Consensus 5 ~~l~~il~~l~~~~~s~~F~~pv---~~~~~pdY~~~I 39 (102)
T d3d7ca1 5 TTLKNLLAQIKSHPSAWPFMEPV---KKSEAPDYYEVI 39 (102)
T ss_dssp HHHHHHHHHHHHSGGGGGGSSCC---CTTTSTTHHHHC
T ss_pred HHHHHHHHHHHhCCCCCccCCCC---ChhhCcCHHHHc
Confidence 3445677777654 65533 345679998855
No 9
>d1oyvi_ g.69.1.1 (I:) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=9.25 E-value=42 Score=28.79 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.1
Q ss_pred CCCCCCCcc
Q 004230 267 PEDDPRNPA 275 (766)
Q Consensus 267 PEDDPRNPa 275 (766)
-|.|||||-
T Consensus 50 Gesdp~nPK 58 (116)
T d1oyvi_ 50 GESDPKRPN 58 (116)
T ss_dssp CCBCSSSCC
T ss_pred CccCCCCCC
Confidence 478999984
No 10
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.74 E-value=39 Score=29.26 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=14.2
Q ss_pred hhccCCCCCCCCCc-----cccccccccc
Q 004230 261 KVERNIPEDDPRNP-----AVIADNVGDN 284 (766)
Q Consensus 261 KVEagIPEDDPRNP-----avIADnVGDN 284 (766)
|+|+ -||+|| |+|.+++|+.
T Consensus 17 kLEa----vdp~~~~~i~vAtV~~v~g~~ 41 (127)
T d1wjra_ 17 LIEL----QDSQNPFQYWIVSVIENVGGR 41 (127)
T ss_dssp EEEE----ECSSCSSCEEEEECCCEETTE
T ss_pred EEEE----EcCCCCCeEEEEEEEEEECCE
Confidence 6677 567765 7888887754
Done!