BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004232
(766 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 152/304 (50%), Gaps = 32/304 (10%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXX 534
L +L+EATNNFD ++G G +GK+YKG L +G VA++ +
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI-SENTPGKVLNWSERL 593
HPHLV L+G C + N++ L+Y++M NGN + H+ + P ++W +RL
Sbjct: 91 FCRHPHLVSLIGFCDER--------NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS----- 648
+ IG A+ + +LHT I + VK+ NILL+E+ + K++D+G+S +++
Sbjct: 143 EICIGAARGLHYLHTRAI---IHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXX 199
Query: 649 -VGGK--QEDPNSWEMTKLED--DVFSFGFMLLESVAGPSVAARKGQFLQEELDSL---- 699
V G DP + +L + DV+SFG +L E + S Q L E+ +L
Sbjct: 200 VVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIV---QSLPREMVNLAEWA 256
Query: 700 ---NSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYAAQV 756
++ +++VDP + A KC+ S RPS D+LW L+YA ++
Sbjct: 257 VESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316
Query: 757 QETA 760
QE+
Sbjct: 317 QESV 320
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 151/304 (49%), Gaps = 32/304 (10%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXX 534
L +L+EATNNFD ++G G +GK+YKG L +G VA++ +
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI-SENTPGKVLNWSERL 593
HPHLV L+G C + N++ L+Y++M NGN + H+ + P ++W +RL
Sbjct: 91 FCRHPHLVSLIGFCDER--------NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS----- 648
+ IG A+ + +LHT I + VK+ NILL+E+ + K++D+G+S ++
Sbjct: 143 EICIGAARGLHYLHTRAI---IHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXX 199
Query: 649 -VGGK--QEDPNSWEMTKLED--DVFSFGFMLLESVAGPSVAARKGQFLQEELDSL---- 699
V G DP + +L + DV+SFG +L E + S Q L E+ +L
Sbjct: 200 VVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIV---QSLPREMVNLAEWA 256
Query: 700 ---NSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYAAQV 756
++ +++VDP + A KC+ S RPS D+LW L+YA ++
Sbjct: 257 VESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316
Query: 757 QETA 760
QE+
Sbjct: 317 QESV 320
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 132/302 (43%), Gaps = 25/302 (8%)
Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVR-N 525
L + F+L EL+ A++NF I+G G +GK+YKGRL +GT VA++ L +
Sbjct: 22 LGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQ 81
Query: 526 XXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
H +L+ L G C+ R LVY +M+NG+ + + E +
Sbjct: 82 FQTEVEMISMAVHRNLLRLRGFCMTPTER--------LLVYPYMANGSVASCLRERPESQ 133
Query: 586 -VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
L+W +R + +G A+ + +LH P + VK NILL+E A + D+GL+ + +
Sbjct: 134 PPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD 193
Query: 645 DIN---------SVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG------PSVAARKG 689
+ ++G + S + + DVF +G MLLE + G +A
Sbjct: 194 YKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD 253
Query: 690 QFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWN 749
L + + L ++ + LVD + A C S RP +++
Sbjct: 254 VMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRM 313
Query: 750 LQ 751
L+
Sbjct: 314 LE 315
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 130/302 (43%), Gaps = 25/302 (8%)
Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVR-N 525
L + F+L EL+ A++NF I+G G +GK+YKGRL +G VA++ L +
Sbjct: 14 LGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQ 73
Query: 526 XXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
H +L+ L G C+ R LVY +M+NG+ + + E +
Sbjct: 74 FQTEVEMISMAVHRNLLRLRGFCMTPTER--------LLVYPYMANGSVASCLRERPESQ 125
Query: 586 -VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
L+W +R + +G A+ + +LH P + VK NILL+E A + D+GL+ + +
Sbjct: 126 PPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD 185
Query: 645 DIN---------SVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG------PSVAARKG 689
+ +G + S + + DVF +G MLLE + G +A
Sbjct: 186 YKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD 245
Query: 690 QFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWN 749
L + + L ++ + LVD + A C S RP +++
Sbjct: 246 VMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRM 305
Query: 750 LQ 751
L+
Sbjct: 306 LE 307
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 116/246 (47%), Gaps = 39/246 (15%)
Query: 471 RSFTLEELKEATNNFDMSAI------MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV- 523
SF+ ELK TNNFD I MGEG +G +YKG + N T+VA++ L + T
Sbjct: 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 71
Query: 524 ---RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
+ H +LV LLG DG DD LVY +M NG+ +S
Sbjct: 72 ELKQQFDQEIKVMAKCQHENLVELLGFSSDG---DDLC-----LVYVYMPNGSLLDRLSC 123
Query: 580 -ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
+ TP L+W R + G A + FLH + +K+ NILL+E AK+SD+G
Sbjct: 124 LDGTPP--LSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFG 178
Query: 639 LSIVSED----------INSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG-PSV-AA 686
L+ SE + + + E+T + D++SFG +LLE + G P+V
Sbjct: 179 LARASEKFAQTVMXSRIVGTTAYMAPEALRGEITP-KSDIYSFGVVLLEIITGLPAVDEH 237
Query: 687 RKGQFL 692
R+ Q L
Sbjct: 238 REPQLL 243
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 116/246 (47%), Gaps = 39/246 (15%)
Query: 471 RSFTLEELKEATNNFDMSAI------MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV- 523
SF+ ELK TNNFD I MGEG +G +YKG + N T+VA++ L + T
Sbjct: 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 71
Query: 524 ---RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
+ H +LV LLG DG DD LVY +M NG+ +S
Sbjct: 72 ELKQQFDQEIKVMAKCQHENLVELLGFSSDG---DDLC-----LVYVYMPNGSLLDRLSC 123
Query: 580 -ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
+ TP L+W R + G A + FLH + +K+ NILL+E AK+SD+G
Sbjct: 124 LDGTPP--LSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFG 178
Query: 639 LSIVSED----------INSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG-PSV-AA 686
L+ SE + + + E+T + D++SFG +LLE + G P+V
Sbjct: 179 LARASEKFAQTVMXXRIVGTTAYMAPEALRGEITP-KSDIYSFGVVLLEIITGLPAVDEH 237
Query: 687 RKGQFL 692
R+ Q L
Sbjct: 238 REPQLL 243
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 117/246 (47%), Gaps = 39/246 (15%)
Query: 471 RSFTLEELKEATNNFDMSAI------MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV- 523
SF+ ELK TNNFD I MGEG +G +YKG + N T+VA++ L + T
Sbjct: 7 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 65
Query: 524 ---RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
+ H +LV LLG DG DD + LVY +M NG+ +S
Sbjct: 66 ELKQQFDQEIKVMAKCQHENLVELLGFSSDG---DD-----LCLVYVYMPNGSLLDRLSC 117
Query: 580 -ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
+ TP L+W R + G A + FLH + +K+ NILL+E AK+SD+G
Sbjct: 118 LDGTPP--LSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFG 172
Query: 639 LSIVSED----------INSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG-PSV-AA 686
L+ SE + + + E+T + D++SFG +LLE + G P+V
Sbjct: 173 LARASEKFAQXVMXXRIVGTTAYMAPEALRGEITP-KSDIYSFGVVLLEIITGLPAVDEH 231
Query: 687 RKGQFL 692
R+ Q L
Sbjct: 232 REPQLL 237
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 116/246 (47%), Gaps = 39/246 (15%)
Query: 471 RSFTLEELKEATNNFDMSAI------MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV- 523
SF+ ELK TNNFD I GEG +G +YKG + N T+VA++ L + T
Sbjct: 4 HSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 62
Query: 524 ---RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
+ H +LV LLG DG DD + LVY + NG+ +S
Sbjct: 63 ELKQQFDQEIKVXAKCQHENLVELLGFSSDG---DD-----LCLVYVYXPNGSLLDRLSC 114
Query: 580 -ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
+ TP L+W R + G A + FLH + +K+ NILL+E AK+SD+G
Sbjct: 115 LDGTPP--LSWHXRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFG 169
Query: 639 LSIVSED----------INSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG-PSV-AA 686
L+ SE + + + E+T + D++SFG +LLE + G P+V
Sbjct: 170 LARASEKFAQXVXXSRIVGTTAYXAPEALRGEITP-KSDIYSFGVVLLEIITGLPAVDEH 228
Query: 687 RKGQFL 692
R+ Q L
Sbjct: 229 REPQLL 234
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 100/233 (42%), Gaps = 23/233 (9%)
Query: 132 GSLPDKIHRL-YSLEYLDLSSNFLFGSVPPKISTMVK--LQTLILDDNFFNNTIPNWFDS 188
G LP+ + L SL LDLSSN G + P + K LQ L L +N F IP +
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 189 LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXX 248
L L + N L+G PSS+ +S L DL L N +
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV----------- 462
Query: 249 XXXXXPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNI 308
K L++ F N +GEIP L + +S N L G P I L N+
Sbjct: 463 ------KTLETLILDF---NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 309 SDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKF 361
+ L L++N FSG++P L L++ D++ N G +P+ + +S K F
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 107/248 (43%), Gaps = 9/248 (3%)
Query: 132 GSLPDKIH-RLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIP-NWFDSL 189
G +PD + +L LDLS N +G+VPP + L++L L N F+ +P + +
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 190 PSLTFLSMRNNKLAGPFPSSIQRIS-TLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXX 248
L L + N+ +G P S+ +S +L LDLS N
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 249 XXXXXPKLP------RGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
K+P LV LS N SG IP G L++L+ L + N L G P +
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 303 FSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR 362
+ + L L N +G +P L+ L + +SNN+LTG +P + + ++K
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 363 GNCLSSNV 370
N S N+
Sbjct: 520 NNSFSGNI 527
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 107/242 (44%), Gaps = 15/242 (6%)
Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
+L++LD+S N L G IST +L+ L + N F IP L SL +LS+ NK
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 278
Query: 203 AGPFPSSIQ-RISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLP---- 257
G P + TL+ LDLS N +LP
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELPMDTL 336
Query: 258 ---RGLVMAFLSNNSFSGEIPKQYGQLN-QLQQLDMSFNALRGMPPPAIFSLP--NISDL 311
RGL + LS N FSGE+P+ L+ L LD+S N G P + P + +L
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 312 NLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQ 371
L +N F+G +P L+ +LV +S N L+G +PS L + S R +K N L +
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 372 NQ 373
+
Sbjct: 457 QE 458
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 103/272 (37%), Gaps = 35/272 (12%)
Query: 132 GSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFD-SLP 190
G I L+ L++SSN G +PP + LQ L L +N F IP++ +
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 191 SLTFLSMRNNKLAGPFP-------------------------SSIQRISTLSDLDLSKNA 225
+LT L + N G P ++ ++ L LDLS N
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 226 IXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLP-------RGLVMAFLSNNSFSGEIPKQY 278
P LP L +L NN F+G+IP
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 279 GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDIS 338
++L L +SFN L G P ++ SL + DL L N G +P+ L L +
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 339 NNKLTGGLPSCLSNESDKRVVKFRGNCLSSNV 370
N LTG +PS LSN ++ + N L+ +
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 84/213 (39%), Gaps = 45/213 (21%)
Query: 129 GIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDS 188
G G +P + L L LS N+L G++P + ++ KL+ L L N IP
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 189 LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXX 248
+ +L L + N L G PS + + L+ + LS N +
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG-------------------- 501
Query: 249 XXXXXPKLPR------GLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
++P+ L + LSNNSFSG IP + G L LD++ N G P A+
Sbjct: 502 ------EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 303 FSLPNISDLNLASNKFSGSLPKNLNCGGKLVFF 335
F K SG + N G + V+
Sbjct: 556 F-------------KQSGKIAANFIAGKRYVYI 575
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 6/255 (2%)
Query: 130 IWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSL 189
+ G +P + +L ++ LS+N L G +P I + L L L +N F+ IP
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 190 PSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXX 249
SL +L + N G P+++ + S +
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 594
Query: 250 XXXXPKLPRGLVM--AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPN 307
+L R +++ + G + + LDMS+N L G P I S+P
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 654
Query: 308 ISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS 367
+ LNL N SGS+P + L D+S+NKL G +P +S + + N LS
Sbjct: 655 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Query: 368 SNVQNQHPESYCFEV 382
+ PE FE
Sbjct: 715 GPI----PEMGQFET 725
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 130 IWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNW--FD 187
I GS+PD++ L L LDLSSN L G +P +S + L + L +N + IP F+
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Query: 188 SLPSLTFLSMRNNKLAG-PFP 207
+ P FL+ N L G P P
Sbjct: 725 TFPPAKFLN--NPGLCGYPLP 743
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP- 323
+S+N+FS IP G + LQ LD+S N L G AI + + LN++SN+F G +P
Sbjct: 204 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 324 ---KNLNCGGKLVFFDISNNKLTGGLPSCLSNESD 355
K+L + ++ NK TG +P LS D
Sbjct: 263 LPLKSLQ------YLSLAENKFTGEIPDFLSGACD 291
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 100/233 (42%), Gaps = 23/233 (9%)
Query: 132 GSLPDKIHRL-YSLEYLDLSSNFLFGSVPPKISTMVK--LQTLILDDNFFNNTIPNWFDS 188
G LP+ + L SL LDLSSN G + P + K LQ L L +N F IP +
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 189 LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXX 248
L L + N L+G PSS+ +S L DL L N +
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV----------- 465
Query: 249 XXXXXPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNI 308
K L++ F N +GEIP L + +S N L G P I L N+
Sbjct: 466 ------KTLETLILDF---NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 309 SDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKF 361
+ L L++N FSG++P L L++ D++ N G +P+ + +S K F
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 107/248 (43%), Gaps = 9/248 (3%)
Query: 132 GSLPDKIH-RLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIP-NWFDSL 189
G +PD + +L LDLS N +G+VPP + L++L L N F+ +P + +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 190 PSLTFLSMRNNKLAGPFPSSIQRIS-TLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXX 248
L L + N+ +G P S+ +S +L LDLS N
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 249 XXXXXPKLP------RGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
K+P LV LS N SG IP G L++L+ L + N L G P +
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 303 FSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR 362
+ + L L N +G +P L+ L + +SNN+LTG +P + + ++K
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 363 GNCLSSNV 370
N S N+
Sbjct: 523 NNSFSGNI 530
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 107/242 (44%), Gaps = 15/242 (6%)
Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
+L++LD+S N L G IST +L+ L + N F IP L SL +LS+ NK
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281
Query: 203 AGPFPSSIQ-RISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLP---- 257
G P + TL+ LDLS N +LP
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELPMDTL 339
Query: 258 ---RGLVMAFLSNNSFSGEIPKQYGQLN-QLQQLDMSFNALRGMPPPAIFSLP--NISDL 311
RGL + LS N FSGE+P+ L+ L LD+S N G P + P + +L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 312 NLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQ 371
L +N F+G +P L+ +LV +S N L+G +PS L + S R +K N L +
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 372 NQ 373
+
Sbjct: 460 QE 461
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 103/272 (37%), Gaps = 35/272 (12%)
Query: 132 GSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFD-SLP 190
G I L+ L++SSN G +PP + LQ L L +N F IP++ +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 191 SLTFLSMRNNKLAGPFP-------------------------SSIQRISTLSDLDLSKNA 225
+LT L + N G P ++ ++ L LDLS N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 226 IXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLP-------RGLVMAFLSNNSFSGEIPKQY 278
P LP L +L NN F+G+IP
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 279 GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDIS 338
++L L +SFN L G P ++ SL + DL L N G +P+ L L +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 339 NNKLTGGLPSCLSNESDKRVVKFRGNCLSSNV 370
N LTG +PS LSN ++ + N L+ +
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 84/213 (39%), Gaps = 45/213 (21%)
Query: 129 GIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDS 188
G G +P + L L LS N+L G++P + ++ KL+ L L N IP
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 189 LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXX 248
+ +L L + N L G PS + + L+ + LS N +
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG-------------------- 504
Query: 249 XXXXXPKLPR------GLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
++P+ L + LSNNSFSG IP + G L LD++ N G P A+
Sbjct: 505 ------EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 303 FSLPNISDLNLASNKFSGSLPKNLNCGGKLVFF 335
F K SG + N G + V+
Sbjct: 559 F-------------KQSGKIAANFIAGKRYVYI 578
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 91/262 (34%), Gaps = 90/262 (34%)
Query: 132 GSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPS 191
G++P + L L L L N L G +P ++ + L+TLILD N IP+ + +
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 192 LTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXX 251
L ++S+ NN+L G P I R+ L+ L LS
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLS----------------------------- 522
Query: 252 XXPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFS------- 304
NNSFSG IP + G L LD++ N G P A+F
Sbjct: 523 ---------------NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 305 ---------------------------------------LPNISDLNLASNKFSGSLPKN 325
L + N+ S + G
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 326 LNCGGKLVFFDISNNKLTGGLP 347
+ G ++F D+S N L+G +P
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIP 649
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 20/229 (8%)
Query: 130 IWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSL 189
+ G +P I RL +L L LS+N G++P ++ L L L+ N FN ++
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG-------TI 554
Query: 190 PSLTFLSMRNNKLAGPFPSSIQRISTLSDL---------DLSKNAIXXXXXXXXXXXXXX 240
P+ F ++ K+A F + + + +D +L +
Sbjct: 555 PAAMF--KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 241 XXXXXXXXXXXXXPKLPRGLVMAFL--SNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMP 298
P M FL S N SG IPK+ G + L L++ N + G
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 299 PPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLP 347
P + L ++ L+L+SNK G +P+ ++ L D+SNN L+G +P
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 270 FSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCG 329
+ G + + LDMS+N L G P I S+P + LNL N SGS+P +
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 330 GKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHPESYCFEV 382
L D+S+NKL G +P +S + + N LS + PE FE
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI----PEMGQFET 728
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 130 IWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNW--FD 187
I GS+PD++ L L LDLSSN L G +P +S + L + L +N + IP F+
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Query: 188 SLPSLTFLSMRNNKLAG-PFP 207
+ P FL+ N L G P P
Sbjct: 728 TFPPAKFLN--NPGLCGYPLP 746
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP- 323
+S+N+FS IP G + LQ LD+S N L G AI + + LN++SN+F G +P
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 324 ---KNLNCGGKLVFFDISNNKLTGGLPSCLSNESD 355
K+L + ++ NK TG +P LS D
Sbjct: 266 LPLKSLQ------YLSLAENKFTGEIPDFLSGACD 294
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 46/173 (26%)
Query: 182 IPNWFDSLPSLTFLSMRN-NKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXX 240
IP+ +LP L FL + N L GP P +I +++ L L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL--------------------- 106
Query: 241 XXXXXXXXXXXXXPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPP 300
++++ + SG IP Q+ L LD S+NAL G PP
Sbjct: 107 -----------------------YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 301 AIFSLPNISDLNLASNKFSGSLPKNLNCGGKL-VFFDISNNKLTGGLPSCLSN 352
+I SLPN+ + N+ SG++P + KL IS N+LTG +P +N
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 14/229 (6%)
Query: 130 IWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSL 189
+ G +P I +L L YL ++ + G++P +S + L TL N + T+P SL
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 190 PSLTFLSMRNNKLAGPFPSSIQRISTL-SDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXX 248
P+L ++ N+++G P S S L + + +S+N +
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208
Query: 249 XXXXXPKL---PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSL 305
L + L+ NS + ++ K G L LD+ N + G P + L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 306 PNISDLNLASNKFSGSLPKNLNCGGKLVFFDIS---NNKLTGG--LPSC 349
+ LN++ N G +P+ GG L FD+S NNK G LP+C
Sbjct: 268 KFLHSLNVSFNNLCGEIPQ----GGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 22/219 (10%)
Query: 134 LPDKIHRLYSLEYLDLSS-NFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL 192
+P + L L +L + N L G +PP I+ + +L L + + IP++ + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXX 252
L N L+G P SI + L + N I
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG----------------- 170
Query: 253 XPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLN 312
+ +S N +G+IP + LN L +D+S N L G S N ++
Sbjct: 171 --SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 313 LASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLS 351
LA N + L K + L D+ NN++ G LP L+
Sbjct: 228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 274 IPKQYGQLNQLQQLDMS-FNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKL 332
IP L L L + N L G PPAI L + L + SG++P L+ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 333 VFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHPESY 378
V D S N L+G LP +S+ + + F GN +S + P+SY
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI----PDSY 169
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 37/221 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
+N + +GEG++GK++ N VA++ L + ++
Sbjct: 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL 72
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTH------ISENTPGKV 586
H H+V G C++G + + +V+E+M +G+ R H ++E P
Sbjct: 73 QHEHIVKFYGVCVEG--------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTE 124
Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSE 644
L S+ L + +A + +L + F + + T N L+ E+ + K+ D+G+S + S
Sbjct: 125 LTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYST 181
Query: 645 DINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
D VGG P W E DV+S G +L E
Sbjct: 182 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWE 222
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 107/270 (39%), Gaps = 55/270 (20%)
Query: 436 SVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGS 495
S + +G ++ N +Y S+A + +K + + +GEG+
Sbjct: 10 SPTEGKGSGLQGHIIENPQYFSDAC--------------VHHIKR--RDIVLKWELGEGA 53
Query: 496 YGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+GK++ N VA++ L + + ++ H H+V G C
Sbjct: 54 FGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCT 113
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSER-----------LAVLI 597
+G + +V+E+M +G+ + + P K+L E LAV
Sbjct: 114 EG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVAS 165
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQED 655
VA + +L G+ F + + T N L+ + + K+ D+G+S I S D VGG+
Sbjct: 166 QVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTML 222
Query: 656 PNSW--------EMTKLEDDVFSFGFMLLE 677
P W E DV+SFG +L E
Sbjct: 223 PIRWMPPESILYRKFTTESDVWSFGVVLWE 252
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 39/215 (18%)
Query: 491 MGEGSYGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
+GEG++GK++ N VA++ L + + ++ H H+V
Sbjct: 26 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSER----------- 592
G C +G + +V+E+M +G+ + + P K+L E
Sbjct: 86 FGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL 137
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
LAV VA + +L G+ F + + T N L+ + + K+ D+G+S I S D VG
Sbjct: 138 LAVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVG 194
Query: 651 GKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
G+ P W E DV+SFG +L E
Sbjct: 195 GRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWE 229
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 39/215 (18%)
Query: 491 MGEGSYGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
+GEG++GK++ N VA++ L + + ++ H H+V
Sbjct: 20 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSER----------- 592
G C +G + +V+E+M +G+ + + P K+L E
Sbjct: 80 FGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL 131
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
LAV VA + +L G+ F + + T N L+ + + K+ D+G+S I S D VG
Sbjct: 132 LAVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVG 188
Query: 651 GKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
G+ P W E DV+SFG +L E
Sbjct: 189 GRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWE 223
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 14 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 72
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 73 VQLLGVCT----REP----PFYIIIEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 123
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 124 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWT 180
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 181 APESLAYNKFSIKSDVWAFGVLLWE 205
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 18 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 76
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 77 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 127
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 128 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWT 184
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWE 209
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 18 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 76
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 77 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 127
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 128 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 184
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWE 209
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 18 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 76
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 77 VQLLGVCT----REP----PFYIIIEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 127
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 128 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 184
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWE 209
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 491 MGEGSYGKLYKGRLE-NGTSVAIR-CLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHC 548
+G G++G+++ GRL + T VA++ C + HP++V L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
+++V E + G+F T + T G L L ++ A +++L +
Sbjct: 182 TQK--------QPIYIVMELVQGGDFLTFL--RTEGARLRVKTLLQMVGDAAAGMEYLES 231
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED--INSVGGKQEDPNSWEMTKL-- 664
+ + N L+ E + K+SD+G+S D + GG ++ P W +
Sbjct: 232 KCC---IHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALN 288
Query: 665 ------EDDVFSFGFMLLES 678
E DV+SFG +L E+
Sbjct: 289 YGRYSSESDVWSFGILLWET 308
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 491 MGEGSYGKLYKGRLE-NGTSVAIR-CLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHC 548
+G G++G+++ GRL + T VA++ C + HP++V L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
+++V E + G+F T + T G L L ++ A +++L +
Sbjct: 182 TQK--------QPIYIVMELVQGGDFLTFL--RTEGARLRVKTLLQMVGDAAAGMEYLES 231
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED--INSVGGKQEDPNSWEMTKL-- 664
+ + N L+ E + K+SD+G+S D + GG ++ P W +
Sbjct: 232 KCC---IHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVPVKWTAPEALN 288
Query: 665 ------EDDVFSFGFMLLES 678
E DV+SFG +L E+
Sbjct: 289 YGRYSSESDVWSFGILLWET 308
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 18 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 76
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 77 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 127
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 128 AMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 184
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWE 209
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 75
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 76 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 126
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 127 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 183
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 184 APESLAYNKFSIKSDVWAFGVLLWE 208
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 14 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 72
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 73 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 123
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 124 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWT 180
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 181 APESLAYNKFSIKSDVWAFGVLLWE 205
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF----TLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE---- 505
G LP R+F T E+ + + F + ++G G +G++ GRL+
Sbjct: 12 GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
SVAI+ L + R+ HP+++ L G V +
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
V E+M NG+ R H ++ T +++ +L G+A +++L GF + +
Sbjct: 124 VTEYMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSDM---GFVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
NIL+N + + K+SD+GLS V ED + GGK P + K DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 15 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 73
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 74 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 124
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 125 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWT 181
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 182 APESLAYNKFSIKSDVWAFGVLLWE 206
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 72 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 122
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 123 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 180 APESLAYNKFSIKSDVWAFGVLLWE 204
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 15 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 73
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 74 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 124
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 125 AMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 181
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 182 APESLAYNKFSIKSDVWAFGVLLWE 206
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 72 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 122
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 123 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 180 APESLAYNKFSIKSDVWAFGVLLWE 204
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 26 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNL 84
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 85 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 135
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 136 AMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 192
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 193 APESLAYNKFSIKSDVWAFGVLLWE 217
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 15 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 73
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V LLG C R+ +++ EFM+ GN ++ E +V N L + ++
Sbjct: 74 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 124
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
A+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 125 AMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 181
Query: 661 MTK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 182 APESLAYNKFSIKSDVWAFGVLLWE 206
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 23/204 (11%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ M +G G YG++Y+G + + +VA++ L V HP+LV
Sbjct: 260 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNLV 318
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
LLG C R+ +++ EFM+ GN ++ E +V N L + ++ A
Sbjct: 319 QLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISSA 369
Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEM 661
+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 370 MEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA 426
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 427 PESLAYNKFSIKSDVWAFGVLLWE 450
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 23/204 (11%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ M +G G YG++Y+G + + +VA++ L V HP+LV
Sbjct: 218 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNLV 276
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
LLG C R+ +++ EFM+ GN ++ E +V N L + ++ A
Sbjct: 277 QLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISSA 327
Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEM 661
+++L F + + N L+ E+ + K++D+GLS +++ D + + P W
Sbjct: 328 MEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA 384
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ ++ DV++FG +L E
Sbjct: 385 PESLAYNKFSIKSDVWAFGVLLWE 408
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 474 TLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXX 532
+L++ + + M +G G YG++Y+G + + +VA++ L V
Sbjct: 2 SLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAV 60
Query: 533 XXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
HP+LV LLG C R+ +++ EFM+ GN ++ E N E
Sbjct: 61 MKEIKHPNLVQLLGVCT----REP----PFYIIIEFMTYGNLLDYLRE------CNRQEV 106
Query: 593 LAVLI-----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDI 646
AV++ ++ A+++L F + + N L+ E+ + K++D+GLS +++ D
Sbjct: 107 SAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 163
Query: 647 NSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
+ + P W + ++ DV++FG +L E
Sbjct: 164 XTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 202
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 44/234 (18%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSS-KKYTV 523
A RSFT E EA+ + I+G G G++ GRL + VAI+ L + +
Sbjct: 38 AGRSFTRE--IEASR-IHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQR 94
Query: 524 RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHIS 579
R+ HP+++ L G G +V E+M NG+ RTH
Sbjct: 95 RDFLSEASIMGQFDHPNIIRLEGVVTRG--------RLAMIVTEYMENGSLDTFLRTHDG 146
Query: 580 ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
+ T +++ +L GV +++L G+ + + N+L++ + + K+SD+GL
Sbjct: 147 QFTIMQLVG------MLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGL 197
Query: 640 SIVSED-----INSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
S V ED + GGK P W + DV+SFG ++ E +A
Sbjct: 198 SRVLEDDPDAAYTTTGGKI--PIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLA 249
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 44/234 (18%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSS-KKYTV 523
A RSFT E EA+ + I+G G G++ GRL + VAI+ L + +
Sbjct: 38 AGRSFTRE--IEASR-IHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQR 94
Query: 524 RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHIS 579
R+ HP+++ L G G +V E+M NG+ RTH
Sbjct: 95 RDFLSEASIMGQFDHPNIIRLEGVVTRG--------RLAMIVTEYMENGSLDTFLRTHDG 146
Query: 580 ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
+ T +++ +L GV +++L G+ + + N+L++ + + K+SD+GL
Sbjct: 147 QFTIMQLVG------MLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGL 197
Query: 640 SIVSED-----INSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
S V ED + GGK P W + DV+SFG ++ E +A
Sbjct: 198 SRVLEDDPDAAXTTTGGKI--PIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLA 249
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 49/233 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR------LENGTSVAIRCLPSSKKYTVR-NXXXXXXXXXX 535
NN + +GEG++G++++ R E T VA++ L ++ +
Sbjct: 47 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 106
Query: 536 XXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV--------- 586
+P++V LLG C G + L++E+M+ G+ + +P V
Sbjct: 107 FDNPNIVKLLGVCAVG--------KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLS 158
Query: 587 ------------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL 634
L+ +E+L + VA + +L F + + T N L+ E+ + K+
Sbjct: 159 TRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKI 215
Query: 635 SDYGLS--IVSEDINSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
+D+GLS I S D G P W + E DV+++G +L E
Sbjct: 216 ADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWE 268
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF----TLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE---- 505
G LP R+F T E+ + + F + ++G G +G++ GRL+
Sbjct: 12 GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
SVAI+ L + R+ HP+++ L G V +
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
V E+M NG+ R H ++ T +++ +L G+A +++L G+ + +
Sbjct: 124 VTEYMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSDM---GYVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
NIL+N + + K+SD+GLS V ED + GGK P + K DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 25/222 (11%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL--ENGTS--VAIRC--LPSSKKYTVRNXXX 528
LE++ N + I+GEG +G + +G L E+GTS VA++ L +S + +
Sbjct: 26 LEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLS 85
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI---SENTPGK 585
HP+++ LLG CI+ + + K ++ FM G+ T++ T K
Sbjct: 86 EAACMKDFSHPNVIRLLGVCIEMSSQ---GIPKPMVILPFMKYGDLHTYLLYSRLETGPK 142
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVS 643
+ L ++ +A +++L F + + N +L + ++D+GLS I S
Sbjct: 143 HIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCVADFGLSKKIYS 199
Query: 644 EDINSVGGKQEDPNSW-EMTKLED-------DVFSFGFMLLE 677
D G + P W + L D DV++FG + E
Sbjct: 200 GDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWE 241
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF-----------TLEELKEATN--NFDMSAIMGEGSYGKLYKGRLE---- 505
G LP R+F T+ E + + N + ++G G +G++ GRL+
Sbjct: 12 GHLKLPGLRTFVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
SVAI+ L + R+ HP+++ L G V +
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
V E+M NG+ R H ++ T +++ +L G+A +++L G+ + +
Sbjct: 124 VTEYMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSDM---GYVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
NIL+N + + K+SD+GLS V ED + GGK P + K DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
N + ++G G +G++ GRL+ SVAI+ L + R+
Sbjct: 16 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 75
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
HP+++ L G V +V E+M NG+ R H ++ T +++
Sbjct: 76 HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLV------ 121
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
+L G+A +++L G+ + + NIL+N + + K+SD+GLS V ED +
Sbjct: 122 GMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 178
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
GGK P + K DV+S+G +L E ++
Sbjct: 179 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 216
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 278
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
V LLG C R+ +++ EFM+ GN ++ E N E AV++
Sbjct: 279 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 324
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
++ A+++L F + + N L+ E+ + K++D+GLS +++ D + +
Sbjct: 325 TQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 381
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
P W + ++ DV++FG +L E
Sbjct: 382 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 411
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
N + ++G G +G++ GRL+ SVAI+ L + R+
Sbjct: 33 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 92
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
HP+++ L G V +V E+M NG+ R H ++ T +++
Sbjct: 93 HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLV------ 138
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
+L G+A +++L G+ + + NIL+N + + K+SD+GLS V ED +
Sbjct: 139 GMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 195
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
GGK P + K DV+S+G +L E ++
Sbjct: 196 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 233
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 40/216 (18%)
Query: 491 MGEGSYGKLYKGRLENGTS------VAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
+GEG++GK++ N + VA++ L ++ H H+V
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV-------------LNWSE 591
G C DG + + +V+E+M +G+ + + P + L S+
Sbjct: 83 YGVCGDG--------DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQ 134
Query: 592 RLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSV 649
L + +A + +L + F + + T N L+ + + K+ D+G+S + S D V
Sbjct: 135 MLHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRV 191
Query: 650 GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
GG P W E DV+SFG +L E
Sbjct: 192 GGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWE 227
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 18 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 76
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
V LLG C R+ +++ EFM+ GN ++ E N E AV++
Sbjct: 77 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 122
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
++ A+++L F + + N L+ E+ + K++D+GLS +++ D + +
Sbjct: 123 TQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 179
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
P W + ++ DV++FG +L E
Sbjct: 180 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 209
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXX 531
+L++ + + M +G G YG++Y+G + + +VA++ L V
Sbjct: 1 MSLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAA 59
Query: 532 XXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
HP+LV LLG C R+ +++ EFM+ GN ++ E N E
Sbjct: 60 VMKEIKHPNLVQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQE 105
Query: 592 RLAVLI-----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSED 645
AV++ ++ A+++L F + + N L+ E+ + K++D+GLS +++ D
Sbjct: 106 VSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD 162
Query: 646 INSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
+ + P W + ++ DV++FG +L E
Sbjct: 163 TFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 202
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
V LLG C R+ +++ EFM+ GN ++ E N E AV++
Sbjct: 72 VQLLGVCT----REP----PFYIIIEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 117
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
++ A+++L F + + N L+ E+ + K++D+GLS +++ D + +
Sbjct: 118 TQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 174
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
P W + ++ DV++FG +L E
Sbjct: 175 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
V LLG C R+ +++ EFM+ GN ++ E N E AV++
Sbjct: 72 VQLLGVCT----REP----PFYIIIEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 117
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
++ A+++L F + + N L+ E+ + K++D+GLS +++ D + +
Sbjct: 118 TQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 174
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
P W + ++ DV++FG +L E
Sbjct: 175 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
V LLG C R+ +++ EFM+ GN ++ E N E AV++
Sbjct: 72 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 117
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
++ A+++L F + + N L+ E+ + K++D+GLS +++ D + +
Sbjct: 118 TQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 174
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
P W + ++ DV++FG +L E
Sbjct: 175 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+ M +G G YG++Y+G + + +VA++ L V HP+L
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
V LLG C R+ +++ EFM+ GN ++ E N E AV++
Sbjct: 72 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 117
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
++ A+++L F + + N L+ E+ + K++D+GLS +++ D + +
Sbjct: 118 TQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 174
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
P W + ++ DV++FG +L E
Sbjct: 175 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 37/214 (17%)
Query: 487 MSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHL 541
+ ++G G +G++ GRL+ +VAI+ L + R+ HP++
Sbjct: 47 IERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNV 106
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERLAVLI 597
V L G G V +V EFM NG R H + T +++ +L
Sbjct: 107 VHLEGVVTRG--------KPVMIVIEFMENGALDAFLRKHDGQFTVIQLV------GMLR 152
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK 652
G+A +++L G+ + + NIL+N + + K+SD+GLS V ED + GGK
Sbjct: 153 GIAAGMRYLADM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGK 209
Query: 653 ----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
P + + K DV+S+G ++ E ++
Sbjct: 210 IPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 243
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
N + ++G G +G++ GRL+ SVAI+ L + R+
Sbjct: 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 104
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
HP+++ L G V +V E+M NG+ R H ++ T +++
Sbjct: 105 HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLV------ 150
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
+L G+A +++L G+ + + NIL+N + + K+SD+GLS V ED +
Sbjct: 151 GMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 207
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
GGK P + K DV+S+G +L E ++
Sbjct: 208 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
N + ++G G +G++ GRL+ SVAI+ L + R+
Sbjct: 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 104
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
HP+++ L G V +V E+M NG+ R H ++ T +++
Sbjct: 105 HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLV------ 150
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
+L G+A +++L G+ + + NIL+N + + K+SD+GLS V ED +
Sbjct: 151 GMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 207
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
GGK P + K DV+S+G +L E ++
Sbjct: 208 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
N + ++G G +G++ GRL+ SVAI+ L + R+
Sbjct: 43 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 102
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
HP+++ L G V +V E+M NG+ R H ++ T +++
Sbjct: 103 HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLV------ 148
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
+L G+A +++L G+ + + NIL+N + + K+SD+GLS V ED +
Sbjct: 149 GMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 205
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
GGK P + K DV+S+G +L E ++
Sbjct: 206 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 243
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF----TLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE---- 505
G LP R+F T E+ + + F + ++G G +G++ GRL+
Sbjct: 12 GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
SVAI+ L + R+ HP+++ L G V +
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
V E+M NG+ R H ++ T +++ +L G+A +++L G+ + +
Sbjct: 124 VTEYMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSDM---GYVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
NIL+N + + K+SD+GL+ V ED + GGK P + K DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXX 531
+L++ + + M +G G +G++Y+G + + +VA++ L V
Sbjct: 1 MSLDKWEMERTDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAA 59
Query: 532 XXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
HP+LV LLG C R+ +++ EFM+ GN ++ E N E
Sbjct: 60 VMKEIKHPNLVQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQE 105
Query: 592 RLAVLI-----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSED 645
AV++ ++ A+++L F + + N L+ E+ + K++D+GLS +++ D
Sbjct: 106 VSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD 162
Query: 646 INSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
+ + P W + ++ DV++FG +L E
Sbjct: 163 TXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 202
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF----TLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE---- 505
G LP R+F T E+ + + F + ++G G +G++ GRL+
Sbjct: 12 GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
SVAI+ L + R+ HP+++ L G V +
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
V E+M NG+ R H ++ T +++ +L G+A +++L G+ + +
Sbjct: 124 VTEYMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSD---MGYVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
NIL+N + + K+SD+GL V ED + GGK P + K DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 111/286 (38%), Gaps = 55/286 (19%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVR--NXXXXXXXXXXXXHPHL 541
+ ++ +G GS+G +++ +G+ VA++ L + R HP++
Sbjct: 38 DLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNI 96
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V +G + +V E++S G+ + ++ + L+ RL++ VAK
Sbjct: 97 VLFMGAVTQPPN--------LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI----NSVGGKQEDPN 657
+ +LH P N +K+ N+L+++ K+ D+GLS + S G E
Sbjct: 149 GMNYLHNRNPPIVHRN-LKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPE--- 204
Query: 658 SW--------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV 709
W E + + DV+SFG +L E LQ+ +LN +
Sbjct: 205 -WMAPEVLRDEPSNEKSDVYSFGVILWELAT-----------LQQPWGNLNPAQ------ 246
Query: 710 DPVVMATXXXXXXXXXXXXANK--------CICSESWSRPSFEDIL 747
VV A N C +E W RPSF I+
Sbjct: 247 --VVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIM 290
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
N + ++G G +G++ GRL+ SVAI+ L + R+
Sbjct: 16 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 75
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
HP+++ L G V +V E M NG+ R H ++ T +++
Sbjct: 76 HPNIIRLEGVVTKS--------KPVMIVTEXMENGSLDSFLRKHDAQFTVIQLV------ 121
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
+L G+A +++L G+ + + NIL+N + + K+SD+GLS V ED +
Sbjct: 122 GMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 178
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
GGK P + K DV+S+G +L E ++
Sbjct: 179 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 216
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 21/193 (10%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G + G G VA++C+ + T + H +LV LLG ++
Sbjct: 201 IGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE 257
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK-VLNWSERLAVLIGVAKAVQFLHTG 609
G +++V E+M+ G+ ++ + G+ VL L + V +A+++L
Sbjct: 258 EKG-------GLYIVTEYMAKGSLVDYL--RSRGRSVLGGDCLLKFSLDVCEAMEYLEGN 308
Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGKQEDPNSWEMTKL-- 664
F + + N+L++E +AK+SD+GL+ ++D + K P + K
Sbjct: 309 ---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFST 365
Query: 665 EDDVFSFGFMLLE 677
+ DV+SFG +L E
Sbjct: 366 KSDVWSFGILLWE 378
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G + G G VA++C+ + T + H +LV LLG ++
Sbjct: 14 IGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE 70
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
G +++V E+M+ G+ ++ VL L + V +A+++L
Sbjct: 71 EKG-------GLYIVTEYMAKGSLVDYLRSRGRS-VLGGDCLLKFSLDVCEAMEYLEGN- 121
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGKQEDPNSWEMTKL--E 665
F + + N+L++E +AK+SD+GL+ ++D + K P + K +
Sbjct: 122 --NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTK 179
Query: 666 DDVFSFGFMLLE 677
DV+SFG +L E
Sbjct: 180 SDVWSFGILLWE 191
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 36/236 (15%)
Query: 457 SEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCL 515
S LG+E L ++++ + + M +G G YG++Y G + + +VA++ L
Sbjct: 9 SSGVDLGTENL---YFQSMDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTL 65
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
V HP+LV LLG C ++V E+M GN
Sbjct: 66 -KEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT--------LEPPFYIVTEYMPYGNLL 116
Query: 576 THISENTPGKVLNWSERLAVLI-----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR 630
++ E N E AV++ ++ A+++L F + + N L+ E+
Sbjct: 117 DYLRE------CNREEVTAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENH 167
Query: 631 IAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
+ K++D+GLS +++ D + + P W + ++ DV++FG +L E
Sbjct: 168 VVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWE 223
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 21/193 (10%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G + G G VA++C+ + T + H +LV LLG ++
Sbjct: 29 IGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE 85
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK-VLNWSERLAVLIGVAKAVQFLHTG 609
G +++V E+M+ G+ ++ + G+ VL L + V +A+++L
Sbjct: 86 EKG-------GLYIVTEYMAKGSLVDYL--RSRGRSVLGGDCLLKFSLDVCEAMEYLEGN 136
Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGKQEDPNSWEMTKL-- 664
F + + N+L++E +AK+SD+GL+ ++D + K P + K
Sbjct: 137 ---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFST 193
Query: 665 EDDVFSFGFMLLE 677
+ DV+SFG +L E
Sbjct: 194 KSDVWSFGILLWE 206
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
N + ++G G +G++ GRL+ SVAI+ L + R+
Sbjct: 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 104
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
HP+++ L G V +V E M NG+ R H ++ T +++
Sbjct: 105 HPNIIRLEGVVTKS--------KPVMIVTEXMENGSLDSFLRKHDAQFTVIQLV------ 150
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
+L G+A +++L G+ + + NIL+N + + K+SD+GLS V ED +
Sbjct: 151 GMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 207
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
GGK P + K DV+S+G +L E ++
Sbjct: 208 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 40/207 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G N T VA++ L +V+ H LV L
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRL------ 73
Query: 551 GGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG----VAKA 602
YAV ++++ E+M+ G+ + + GKVL L LI +A+
Sbjct: 74 ------YAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVL-----LPKLIDFSAQIAEG 122
Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWE 660
+ ++ + + ++ N+L++E + K++D+GL+ V ED N ++ + P W
Sbjct: 123 MAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIED-NEYTAREGAKFPIKWT 178
Query: 661 MTK--------LEDDVFSFGFMLLESV 679
+ ++ DV+SFG +L E V
Sbjct: 179 APEAINFGCFTIKSDVWSFGILLYEIV 205
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 44/279 (15%)
Query: 487 MSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHL 541
+ ++G G +G++ GRL+ VAI+ L + R+ HP++
Sbjct: 26 IERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI 85
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
+ L G V +V E+M NG+ T + +N G+ + + +L G++
Sbjct: 86 IHLEGVVTKS--------KPVMIVTEYMENGSLDTFLKKND-GQ-FTVIQLVGMLRGISA 135
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGKQEDP 656
+++L G+ + + NIL+N + + K+SD+GLS V ED + GGK P
Sbjct: 136 GMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI--P 190
Query: 657 NSWEMTKL--------EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL 708
W + DV+S+G ++ E V+ + + D + + E RL
Sbjct: 191 IRWTAPEAIAFRKFTSASDVWSYGIVMWEVVS----YGERPYWEMTNQDVIKAVEEGYRL 246
Query: 709 VDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDIL 747
P+ C E SRP F++I+
Sbjct: 247 PSPMDCPAALYQLML-------DCWQKERNSRPKFDEIV 278
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 47/282 (16%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVR--NXXXXXXXXXXXXHPHL 541
+ ++ +G GS+G +++ +G+ VA++ L + R HP++
Sbjct: 38 DLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNI 96
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
V +G + +V E++S G+ + ++ + L+ RL++ VAK
Sbjct: 97 VLFMGAVTQPPN--------LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSW-- 659
+ +LH P + +K+ N+L+++ K+ D+GLS + W
Sbjct: 149 GMNYLHNRN-PPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMA 207
Query: 660 ------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV 713
E + + DV+SFG +L E LQ+ +LN + VV
Sbjct: 208 PEVLRDEPSNEKSDVYSFGVILWELAT-----------LQQPWGNLNPAQ--------VV 248
Query: 714 MATXXXXXXXXXXXXANK--------CICSESWSRPSFEDIL 747
A N C +E W RPSF I+
Sbjct: 249 AAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIM 290
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 115/267 (43%), Gaps = 44/267 (16%)
Query: 473 FTLEELKEATNNF----DMSAI-----MGEGSYGKLYKGRLE----NGTSVAIRCLPSS- 518
FT E+ EA F D+S + +G G +G++ G L+ VAI+ L S
Sbjct: 14 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 73
Query: 519 KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI 578
+ R+ HP+++ L G V ++ EFM NG+ + +
Sbjct: 74 TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS--------TPVMIITEFMENGSLDSFL 125
Query: 579 SENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
+N G+ + + +L G+A +++L + + + NIL+N + + K+SD+G
Sbjct: 126 RQND-GQ-FTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFG 180
Query: 639 LSIVSED-------INSVGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVAGPSVA 685
LS ED +++GGK P + + K DV+S+G ++ E ++
Sbjct: 181 LSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS----Y 236
Query: 686 ARKGQFLQEELDSLNSQEGRQRLVDPV 712
+ + D +N+ E RL P+
Sbjct: 237 GERPYWDMTNQDVINAIEQDYRLPPPM 263
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 40/207 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G N T VA++ L +V+ H LV L
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRL------ 72
Query: 551 GGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG----VAKA 602
YAV ++++ EFM+ G+ + + GKVL L LI +A+
Sbjct: 73 ------YAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVL-----LPKLIDFSAQIAEG 121
Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWE 660
+ ++ + + ++ N+L++E + K++D+GL+ V ED N ++ + P W
Sbjct: 122 MAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLARVIED-NEYTAREGAKFPIKWT 177
Query: 661 MTK--------LEDDVFSFGFMLLESV 679
+ ++ +V+SFG +L E V
Sbjct: 178 APEAINFGCFTIKSNVWSFGILLYEIV 204
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 95/237 (40%), Gaps = 51/237 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYK-------GRLENGTSVAIRCLPS-SKKYTVRNXXXXXXXXX 534
N + +GEG +GK+ K GR T+VA++ L + +R+
Sbjct: 23 KNLVLGKTLGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLK 81
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT---PGKV----- 586
HPH++ L G C G + L+ E+ G+ R + E+ PG +
Sbjct: 82 QVNHPHVIKLYGACSQDG--------PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGS 133
Query: 587 -----LNWSERLAVLIG--------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
L+ + A+ +G +++ +Q+L + + NIL+ E R K
Sbjct: 134 RNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---SLVHRDLAARNILVAEGRKMK 190
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA 680
+SD+GLS + ED + P W + + DV+SFG +L E V
Sbjct: 191 ISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF----TLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE---- 505
G LP R+F T E+ + + F + ++G G +G++ GRL+
Sbjct: 12 GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
SVAI+ L + R+ HP+++ L G V +
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
V E M NG+ R H ++ T +++ +L G+A +++L G + +
Sbjct: 124 VTEXMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSDM---GAVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
NIL+N + + K+SD+GLS V ED + GGK P + K DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 51/237 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYK-------GRLENGTSVAIRCLPS-SKKYTVRNXXXXXXXXX 534
N + +GEG +GK+ K GR T+VA++ L + +R+
Sbjct: 23 KNLVLGKTLGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLK 81
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT---PGKV----- 586
HPH++ L G C G + L+ E+ G+ R + E+ PG +
Sbjct: 82 QVNHPHVIKLYGACSQDG--------PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGS 133
Query: 587 -----LNWSERLAVLIG--------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
L+ + A+ +G +++ +Q+L + + + NIL+ E R K
Sbjct: 134 RNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKL---VHRDLAARNILVAEGRKMK 190
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA 680
+SD+GLS + ED + P W + + DV+SFG +L E V
Sbjct: 191 ISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCL-PSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
+GEG +GK+ R + G VA++ L P S + + H ++V
Sbjct: 29 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
G C + GG N + L+ EF+ +G+ + ++ +N +N ++L + + K +
Sbjct: 89 KGICTEDGG------NGIKLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMD 140
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE---DINSVGGKQEDPNSWEM 661
+L + + + + N+L+ K+ D+GL+ E + +V ++ P W
Sbjct: 141 YLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYA 197
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG L E
Sbjct: 198 PECLMQSKFYIASDVWSFGVTLHE 221
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCL-PSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
+GEG +GK+ R + G VA++ L P S + + H ++V
Sbjct: 17 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 76
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
G C + GG N + L+ EF+ +G+ + ++ +N +N ++L + + K +
Sbjct: 77 KGICTEDGG------NGIKLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMD 128
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE---DINSVGGKQEDPNSWEM 661
+L + + + + N+L+ K+ D+GL+ E + +V ++ P W
Sbjct: 129 YLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYA 185
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG L E
Sbjct: 186 PECLMQSKFYIASDVWSFGVTLHE 209
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G + G G VA++C+ + T + H +LV LLG ++
Sbjct: 20 IGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE 76
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
G +++V E+M+ G+ ++ VL L + V +A+++L
Sbjct: 77 EKG-------GLYIVTEYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGN- 127
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGKQEDPNSWEMTKL--E 665
F + + N+L++E +AK+SD+GL+ ++D + K P + +
Sbjct: 128 --NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREAAFSTK 185
Query: 666 DDVFSFGFMLLE 677
DV+SFG +L E
Sbjct: 186 SDVWSFGILLWE 197
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 51/237 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYK-------GRLENGTSVAIRCLPS-SKKYTVRNXXXXXXXXX 534
N + +GEG +GK+ K GR T+VA++ L + +R+
Sbjct: 23 KNLVLGKTLGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLK 81
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT---PGKV----- 586
HPH++ L G C G + L+ E+ G+ R + E+ PG +
Sbjct: 82 QVNHPHVIKLYGACSQDG--------PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGS 133
Query: 587 -----LNWSERLAVLIG--------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
L+ + A+ +G +++ +Q+L + + + NIL+ E R K
Sbjct: 134 RNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKL---VHRDLAARNILVAEGRKMK 190
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA 680
+SD+GLS + ED + P W + + DV+SFG +L E V
Sbjct: 191 ISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 11/169 (6%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXX 533
L L++ F++ ++G G+YG++YKGR ++ G AI+ + +
Sbjct: 16 LSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLK 75
Query: 534 XXXXHPHLVCLLGHCIDGG--GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
H ++ G I G DD +++LV EF G+ T + +NT G L
Sbjct: 76 KYSHHRNIATYYGAFIKKNPPGMDD----QLWLVMEFCGAGSV-TDLIKNTKGNTLKEEW 130
Query: 592 RLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + + LH + + +K N+LL E+ KL D+G+S
Sbjct: 131 IAYICREILRGLSHLHQHKV---IHRDIKGQNVLLTENAEVKLVDFGVS 176
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 38 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 97
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 98 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 148
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
FL + F + + N +L+E K++D+GL+ ++ ++ +SV K + P W
Sbjct: 149 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKWM 205
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 206 ALESLQTQKFTTKSDVWSFGVLLWE 230
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 11 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 69
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + T GK L + + + +
Sbjct: 70 QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQI 116
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 117 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 172
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 173 KWTAPEAALYGRFTIKSDVWSFGILLTE 200
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 117/309 (37%), Gaps = 55/309 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-----X 537
N+ ++GEG++G++ K R++ + K+Y ++
Sbjct: 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-----RTHISENTPG-------- 584
HP+++ LLG C G ++L E+ +GN ++ + E P
Sbjct: 85 HPNIINLLGACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 136
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
L+ + L VA+ + +L F + + NIL+ E+ +AK++D+GLS E
Sbjct: 137 STLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQE 193
Query: 645 -DINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE--SVAGPSVAARKGQFLQ 693
+ G+ P W + DV+S+G +L E S+ G L
Sbjct: 194 VYVKKTMGRL--PVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY 251
Query: 694 EELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYA 753
E+L E D V +C + + RPSF IL +L
Sbjct: 252 EKLPQGYRLEKPLNCDDEVY-------------DLMRQCWREKPYERPSFAQILVSLNRM 298
Query: 754 AQVQETADN 762
+ ++T N
Sbjct: 299 LEERKTYVN 307
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 37 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 97 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 147
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
FL + F + + N +L+E K++D+GL+ + ++ +SV K + P W
Sbjct: 148 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 204
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 205 ALESLQTQKFTTKSDVWSFGVLLWE 229
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 96 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 155
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 156 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 206
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
FL + F + + N +L+E K++D+GL+ + ++ +SV K + P W
Sbjct: 207 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 263
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 264 ALESLQTQKFTTKSDVWSFGVLLWE 288
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 35 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 94
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 95 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 145
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
FL + F + + N +L+E K++D+GL+ + ++ +SV K + P W
Sbjct: 146 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 202
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 203 ALESLQTQKFTTKSDVWSFGVLLWE 227
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 117/309 (37%), Gaps = 55/309 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-----X 537
N+ ++GEG++G++ K R++ + K+Y ++
Sbjct: 22 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 81
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-----RTHISENTPG-------- 584
HP+++ LLG C G ++L E+ +GN ++ + E P
Sbjct: 82 HPNIINLLGACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 133
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
L+ + L VA+ + +L F + + NIL+ E+ +AK++D+GLS E
Sbjct: 134 STLSSQQLLHFAADVARGMDYLSQ---KQFIHRNLAARNILVGENYVAKIADFGLSRGQE 190
Query: 645 -DINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE--SVAGPSVAARKGQFLQ 693
+ G+ P W + DV+S+G +L E S+ G L
Sbjct: 191 VYVKKTMGRL--PVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY 248
Query: 694 EELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYA 753
E+L E D V +C + + RPSF IL +L
Sbjct: 249 EKLPQGYRLEKPLNCDDEVY-------------DLMRQCWREKPYERPSFAQILVSLNRM 295
Query: 754 AQVQETADN 762
+ ++T N
Sbjct: 296 LEERKTYVN 304
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 31/200 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G+++ G T VAI+ L + H LV L
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLVQL------ 327
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
YAV +++V E+MS G+ + T GK L + + + +A + ++
Sbjct: 328 ------YAVVSEEPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVE 380
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
+ + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P W +
Sbjct: 381 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPIKWTAPEAA 436
Query: 664 ------LEDDVFSFGFMLLE 677
++ DV+SFG +L E
Sbjct: 437 LYGRFTIKSDVWSFGILLTE 456
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 37 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 97 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 147
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
FL + F + + N +L+E K++D+GL+ + ++ +SV K + P W
Sbjct: 148 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 204
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 205 ALESLQTQKFTTKSDVWSFGVLLWE 229
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 38 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 97
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 98 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 148
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
FL + F + + N +L+E K++D+GL+ + ++ +SV K + P W
Sbjct: 149 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 205
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 206 ALESLQTQKFTTKSDVWSFGVLLWE 230
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 42 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 101
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 102 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 152
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
FL + F + + N +L+E K++D+GL+ + ++ +SV K + P W
Sbjct: 153 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 209
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 210 ALESLQTQKFTTKSDVWSFGVLLWE 234
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLV 242
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + T GK L + + + +
Sbjct: 243 QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQI 289
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 290 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 345
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 346 KWTAPEAALYGRFTIKSDVWSFGILLTE 373
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 31/200 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G+++ G T VAI+ L + H LV L
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL------ 244
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
YAV +++V E+MS G+ + T GK L + + + +A + ++
Sbjct: 245 ------YAVVSEEPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVE 297
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
+ + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P W +
Sbjct: 298 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPIKWTAPEAA 353
Query: 664 ------LEDDVFSFGFMLLE 677
++ DV+SFG +L E
Sbjct: 354 LYGRFTIKSDVWSFGILLTE 373
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 117/309 (37%), Gaps = 55/309 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-----X 537
N+ ++GEG++G++ K R++ + K+Y ++
Sbjct: 15 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 74
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-----RTHISENTPG-------- 584
HP+++ LLG C G ++L E+ +GN ++ + E P
Sbjct: 75 HPNIINLLGACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 126
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
L+ + L VA+ + +L F + + NIL+ E+ +AK++D+GLS E
Sbjct: 127 STLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQE 183
Query: 645 -DINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE--SVAGPSVAARKGQFLQ 693
+ G+ P W + DV+S+G +L E S+ G L
Sbjct: 184 VYVKKTMGRL--PVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY 241
Query: 694 EELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYA 753
E+L E D V +C + + RPSF IL +L
Sbjct: 242 EKLPQGYRLEKPLNCDDEVY-------------DLMRQCWREKPYERPSFAQILVSLNRM 288
Query: 754 AQVQETADN 762
+ ++T N
Sbjct: 289 LEERKTYVN 297
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 16/163 (9%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXX 537
K+ FD+ +GEGSYG +YK E G VAI+ +P ++
Sbjct: 25 KQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD--LQEIIKEISIMQQCD 82
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
PH+V G + +++V E+ G+ I K L E +L
Sbjct: 83 SPHVVKYYGSY--------FKNTDLWIVMEYCGAGSVSDII--RLRNKTLTEDEIATILQ 132
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
K +++LH + +K NILLN AKL+D+G++
Sbjct: 133 STLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVA 172
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLV 242
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + T GK L + + + +
Sbjct: 243 QL------------YAVVSEEPIYIVGEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQI 289
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 290 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 345
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 346 KWTAPEAALYGRFTIKSDVWSFGILLTE 373
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G ++ G N VAI+ + + + HP LV L G C++
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+ LV+EFM +G ++ T + L + + V + + +L
Sbjct: 74 QA--------PICLVFEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAC 123
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
+ + + N L+ E+++ K+SD+G++ V +D + + P W ++
Sbjct: 124 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 180
Query: 665 ---EDDVFSFGFMLLE 677
+ DV+SFG ++ E
Sbjct: 181 YSSKSDVWSFGVLMWE 196
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G ++ G N VAI+ + + + HP LV L G C++
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+ LV+EFM +G ++ T + L + + V + + +L
Sbjct: 72 QA--------PICLVFEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAC 121
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
+ + + N L+ E+++ K+SD+G++ V +D + + P W ++
Sbjct: 122 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 178
Query: 665 ---EDDVFSFGFMLLE 677
+ DV+SFG ++ E
Sbjct: 179 YSSKSDVWSFGVLMWE 194
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G ++ G N VAI+ + + + HP LV L G C++
Sbjct: 18 IGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+ LV+EFM +G ++ T + L + + V + + +L
Sbjct: 77 QA--------PICLVFEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAC 126
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
+ + + N L+ E+++ K+SD+G++ V +D + + P W ++
Sbjct: 127 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 183
Query: 665 ---EDDVFSFGFMLLE 677
+ DV+SFG ++ E
Sbjct: 184 YSSKSDVWSFGVLMWE 199
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 8 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 66
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV + +V E+MS G+ + T GK L + + + +
Sbjct: 67 QL------------YAVVSEEPIXIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQI 113
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 114 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEXTARQGAKFPI 169
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 170 KWTAPEAALYGRFTIKSDVWSFGILLTE 197
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 99/243 (40%), Gaps = 37/243 (15%)
Query: 460 AKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIR 513
A + E A + +E + A MS +G+GS+G +Y+G + E T VAI+
Sbjct: 2 ASVNPEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIK 61
Query: 514 CL--PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN 571
+ +S + + H H+V LLG G ++ E M+
Sbjct: 62 TVNEAASMRERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTR 112
Query: 572 GNFRTHISENTPGKVLN-------WSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNI 624
G+ ++++ P N S+ + + +A + +L+ F + + N
Sbjct: 113 GDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNC 169
Query: 625 LLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFM 674
++ E K+ D+G++ I D GGK P W + L+D DV+SFG +
Sbjct: 170 MVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 229
Query: 675 LLE 677
L E
Sbjct: 230 LWE 232
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + GK L + + + +
Sbjct: 77 QL------------YAVVSEEPIYIVIEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEXTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + GK L + + + +
Sbjct: 77 QL------------YAVVSEEPIYIVIEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 20/170 (11%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGRLENGTS-VAIRCLP-----SSKKYTVRNXXXXX 530
++K ++ +GEG + +YK R +N VAI+ + +K R
Sbjct: 4 DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI 63
Query: 531 XXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWS 590
HP+++ LL D G + + LV++FM + I +N+ VL S
Sbjct: 64 KLLQELSHPNIIGLL----DAFGHK----SNISLVFDFMET-DLEVIIKDNS--LVLTPS 112
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
A ++ + +++LH I + +K NN+LL+E+ + KL+D+GL+
Sbjct: 113 HIKAYMLMTLQGLEYLHQHWI---LHRDLKPNNLLLDENGVLKLADFGLA 159
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G ++ G N VAI+ + + + HP LV L G C++
Sbjct: 35 IGSGQFGLVHLGYWLNKDKVAIKTIKEGS-MSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+ LV+EFM +G ++ T + L + + V + + +L
Sbjct: 94 QA--------PICLVFEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAC 143
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
+ + + N L+ E+++ K+SD+G++ V +D + + P W ++
Sbjct: 144 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 200
Query: 665 ---EDDVFSFGFMLLE 677
+ DV+SFG ++ E
Sbjct: 201 YSSKSDVWSFGVLMWE 216
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 9 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 67
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + GK L + + + +
Sbjct: 68 QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 114
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 115 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 170
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 171 KWTAPEAALYGRFTIKSDVWSFGILLTE 198
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + GK L + + + +
Sbjct: 77 QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 7 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 65
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + GK L + + + +
Sbjct: 66 QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 112
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 113 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 168
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 169 KWTAPEAALYGRFTIKSDVWSFGILLTE 196
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKIRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + GK L + + + +
Sbjct: 77 QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 35/244 (14%)
Query: 487 MSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHL 541
+ ++G G +G++ G L+ VAI+ L S + R+ HP++
Sbjct: 11 IEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNV 70
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
+ L G V ++ EFM NG+ + + +N G+ + + +L G+A
Sbjct: 71 IHLEGVVTKS--------TPVMIITEFMENGSLDSFLRQND-GQ-FTVIQLVGMLRGIAA 120
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-------INSVGGK-- 652
+++L + + + NIL+N + + K+SD+GLS ED +++GGK
Sbjct: 121 GMKYLADM---NYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIP 177
Query: 653 --QEDPNSWEMTKL--EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL 708
P + + K DV+S+G ++ E ++ + + D +N+ E RL
Sbjct: 178 IRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS----YGERPYWDMTNQDVINAIEQDYRL 233
Query: 709 VDPV 712
P+
Sbjct: 234 PPPM 237
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 15 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 73
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+M+ G+ + T GK L + + + +
Sbjct: 74 QL------------YAVVSEEPIYIVTEYMNKGSLLDFLKGET-GKYLRLPQLVDMSAQI 120
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 121 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 176
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 177 KWTAPEAALYGRFTIKSDVWSFGILLTE 204
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + GK L + + + +
Sbjct: 77 QL------------YAVVSEEPIYIVCEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 39/217 (17%)
Query: 487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK----KYTVRNXXXXXXXXXXXXHPHLV 542
+ I+G G +GK+Y+ G VA++ T+ N HP+++
Sbjct: 11 LEEIIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNII 69
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN--TPGKVLNWSERLAVLIGVA 600
L G C+ + LV EF G +S P ++NW+ + +A
Sbjct: 70 ALRGVCLKE--------PNLCLVMEFARGGPLNRVLSGKRIPPDILVNWA------VQIA 115
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNE--------HRIAKLSDYGLSIVSEDINSVGGK 652
+ + +LH I + +K++NIL+ + ++I K++D+GL+ E +
Sbjct: 116 RGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA--REWHRTTKMS 173
Query: 653 QEDPNSW--------EMTKLEDDVFSFGFMLLESVAG 681
+W M DV+S+G +L E + G
Sbjct: 174 AAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTG 210
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G ++ G N VAI+ + + + HP LV L G C++
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+ LV+EFM +G ++ T + L + + V + + +L
Sbjct: 74 QA--------PICLVFEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAS 123
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
+ + + N L+ E+++ K+SD+G++ V +D + + P W ++
Sbjct: 124 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 180
Query: 665 ---EDDVFSFGFMLLE 677
+ DV+SFG ++ E
Sbjct: 181 YSSKSDVWSFGVLMWE 196
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 37/243 (15%)
Query: 460 AKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIR 513
A + E A + +E + A MS +G+GS+G +Y+G + E T VAI+
Sbjct: 2 ASVNPEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIK 61
Query: 514 CL--PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN 571
+ +S + + H H+V LLG G ++ E M+
Sbjct: 62 TVNEAASMRERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTR 112
Query: 572 GNFRTHIS------ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNI 624
G+ ++++ EN P ++ + G +A + +L+ F + + N
Sbjct: 113 GDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNC 169
Query: 625 LLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFM 674
++ E K+ D+G++ I D GGK P W + L+D DV+SFG +
Sbjct: 170 MVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 229
Query: 675 LLE 677
L E
Sbjct: 230 LWE 232
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 15 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 73
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+M+ G+ + T GK L + + + +
Sbjct: 74 QL------------YAVVSEEPIYIVTEYMNKGSLLDFLKGET-GKYLRLPQLVDMSAQI 120
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 121 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEWTARQGAKFPI 176
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 177 KWTAPEAALYGRFTIKSDVWSFGILLTE 204
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 36/227 (15%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
E+ + NN +G G++GK+ + G+ + VA++ L S+ +
Sbjct: 39 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 98
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG---NFRTHISE---- 580
H ++V LLG C GG V ++ E+ G NF +E
Sbjct: 99 ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKAEADLD 150
Query: 581 NTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
G+ L + L VA+ + FL + + V N+LL +AK+ D+GL+
Sbjct: 151 KEDGRPLELRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLA 207
Query: 641 --IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
I+++ V G P W + ++ DV+S+G +L E
Sbjct: 208 RDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 254
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 36 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 95
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 96 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 146
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
+L + F + + N +L+E K++D+GL+ + ++ SV K + P W
Sbjct: 147 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKWM 203
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 204 ALESLQTQKFTTKSDVWSFGVLLWE 228
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 38/230 (16%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
E+ + NN +G G++GK+ + G+ + VA++ L S+ +
Sbjct: 39 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 98
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
H ++V LLG C GG V ++ E+ G+ + + +VL
Sbjct: 99 ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKS--RVL 148
Query: 588 NWSERLAVLIGVAKAVQFLH--TGVIPGF--------FNNRVKTNNILLNEHRIAKLSDY 637
A+ A LH + V G + V N+LL +AK+ D+
Sbjct: 149 ETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDF 208
Query: 638 GLS--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
GL+ I+++ V G P W + ++ DV+S+G +L E
Sbjct: 209 GLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 258
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 36/227 (15%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
E+ + NN +G G++GK+ + G+ + VA++ L S+ +
Sbjct: 31 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 90
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG---NFRTHISE---- 580
H ++V LLG C GG V ++ E+ G NF +E
Sbjct: 91 ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKAEADLD 142
Query: 581 NTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
G+ L + L VA+ + FL + + V N+LL +AK+ D+GL+
Sbjct: 143 KEDGRPLELRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLA 199
Query: 641 --IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
I+++ V G P W + ++ DV+S+G +L E
Sbjct: 200 RDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 246
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 56 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 115
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 116 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 166
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
+L + F + + N +L+E K++D+GL+ + ++ SV K + P W
Sbjct: 167 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 223
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 224 ALESLQTQKFTTKSDVWSFGVLLWE 248
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G + GK L + + + +
Sbjct: 77 QL------------YAVVSEEPIYIVMEYMSKGCLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 29 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 88
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 89 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 139
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
+L + F + + N +L+E K++D+GL+ + ++ SV K + P W
Sbjct: 140 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 196
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 197 ALESLQTQKFTTKSDVWSFGVLLWE 221
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 46/237 (19%)
Query: 473 FTLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSK 519
FT E+ +A F + ++G G +G++ GRL+ VAI+ L +
Sbjct: 10 FTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAG- 68
Query: 520 KYT---VRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT 576
YT R+ HP+++ L G V ++ E+M NG+
Sbjct: 69 -YTDKQRRDFLSEASIMGQFDHPNIIHLEGVVT--------KCKPVMIITEYMENGSLDA 119
Query: 577 HISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD 636
+ +N G+ + + +L G+ +++L + + NIL+N + + K+SD
Sbjct: 120 FLRKND-GR-FTVIQLVGMLRGIGSGMKYLSDM---SAVHRDLAARNILVNSNLVCKVSD 174
Query: 637 YGLSIVSED-----INSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
+G+S V ED + GGK P W + DV+S+G ++ E ++
Sbjct: 175 FGMSRVLEDDPEAAYTTRGGKI--PIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 229
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 37/243 (15%)
Query: 460 AKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIR 513
A + E A + +E + A MS +G+GS+G +Y+G + E T VAI+
Sbjct: 24 ASVNPEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIK 83
Query: 514 CL--PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN 571
+ +S + + H H+V LLG G ++ E M+
Sbjct: 84 TVNEAASMRERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTR 134
Query: 572 GNFRTHIS------ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNI 624
G+ ++++ EN P ++ + G +A + +L+ F + + N
Sbjct: 135 GDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNC 191
Query: 625 LLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFM 674
++ E K+ D+G++ I D GGK P W + L+D DV+SFG +
Sbjct: 192 MVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 251
Query: 675 LLE 677
L E
Sbjct: 252 LWE 254
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
A F +E + A MS +G+GS+G +Y+G + E T VAI+ + +S +
Sbjct: 2 AADVFVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 61
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
+ H H+V LLG G ++ E M+ G+ ++++
Sbjct: 62 ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 112
Query: 580 -----ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
EN P ++ + G +A + +L+ F + + N ++ E K
Sbjct: 113 LRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 169
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
+ D+G++ I D GGK P W + L+D DV+SFG +L E
Sbjct: 170 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 223
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 37 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 97 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 147
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
+L + F + + N +L+E K++D+GL+ + ++ SV K + P W
Sbjct: 148 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 204
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 205 ALESLQTQKFTTKSDVWSFGVLLWE 229
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 34 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 93
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 94 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 144
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
+L + F + + N +L+E K++D+GL+ + ++ SV K + P W
Sbjct: 145 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 201
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 202 ALESLQTQKFTTKSDVWSFGVLLWE 226
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 55 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 114
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 115 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 165
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
+L + F + + N +L+E K++D+GL+ + ++ SV K + P W
Sbjct: 166 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 222
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 223 ALESLQTQKFTTKSDVWSFGVLLWE 247
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ EF+ G+ R ++ ++ + ++ + L + K +++
Sbjct: 81 GVCYSAGRRN------LKLIMEFLPYGSLREYLQKHK--ERIDHIKLLQYTSQICKGMEY 132
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 133 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 188
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 189 PESLTESKFSVASDVWSFGVVLYE 212
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 42/230 (18%)
Query: 476 EELKEATNNFDMSAI-----MGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYT---V 523
+ ++E D S I +G G +G++ GRL+ VAI+ L + YT
Sbjct: 2 QAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAG--YTDKQR 59
Query: 524 RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP 583
R+ HP+++ L G V ++ E+M NG+ + +N
Sbjct: 60 RDFLSEASIMGQFDHPNIIHLEGVVT--------KCKPVMIITEYMENGSLDAFLRKND- 110
Query: 584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS 643
G+ + + +L G+ +++L + + + NIL+N + + K+SD+G+S V
Sbjct: 111 GR-FTVIQLVGMLRGIGSGMKYLSD---MSYVHRDLAARNILVNSNLVCKVSDFGMSRVL 166
Query: 644 ED-----INSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
ED + GGK P W + DV+S+G ++ E ++
Sbjct: 167 EDDPEAAYTTRGGKI--PIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 214
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G + GK L + + + +
Sbjct: 77 QL------------YAVVSEEPIYIVTEYMSKGCLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + ++ NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 36 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 95
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 96 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 146
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
+L + F + + N +L+E K++D+GL+ + ++ SV K + P W
Sbjct: 147 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 203
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 204 ALESLQTQKFTTKSDVWSFGVLLWE 228
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 32 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 91
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 92 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 142
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
+L + F + + N +L+E K++D+GL+ + ++ SV K + P W
Sbjct: 143 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 199
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 200 ALESLQTQKFTTKSDVWSFGVLLWE 224
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 37 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 97 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 147
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
+L + F + + N +L+E K++D+GL+ + ++ SV K + P W
Sbjct: 148 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 204
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 205 ALESLQTQKFTTKSDVWSFGVLLWE 229
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 27/227 (11%)
Query: 462 LGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY 521
LGS+ P+ + + +G G +G + G+ VAI+ +
Sbjct: 3 LGSKNAPSTAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM- 61
Query: 522 TVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN 581
+ H LV L G C +F++ E+M+NG ++ E
Sbjct: 62 SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ--------RPIFIITEYMANGCLLNYLREM 113
Query: 582 TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS- 640
+ L + V +A+++L + F + + N L+N+ + K+SD+GLS
Sbjct: 114 R--HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR 168
Query: 641 --IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE 677
+ E+ +SVG K P W ++ + D+++FG ++ E
Sbjct: 169 YVLDDEETSSVGSKF--PVRWSPPEVLMYSKFSSKSDIWAFGVLMWE 213
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
++G G +G +Y G L + I C + S + T V HP+++ L
Sbjct: 35 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 94
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
LG C+ G +V +M +G+ R I T + + + + VAK ++
Sbjct: 95 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 145
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
+L + F + + N +L+E K++D+GL+ + ++ SV K + P W
Sbjct: 146 YLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 202
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 203 ALESLQTQKFTTKSDVWSFGVLLWE 227
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+ + +G+G +G+++ G T VAI+ L + H LV
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
L YAV +++V E+MS G+ + GK L + + + +
Sbjct: 77 QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
A + ++ + + + NIL+ E+ + K++D+GL+ + ED N +Q + P
Sbjct: 124 ASGMAYVERM---NYVHRDLAAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
A + +E + A MS +G+GS+G +Y+G + E T VAI+ + +S +
Sbjct: 1 AADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 60
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H H+V LLG G ++ E M+ G+ ++++
Sbjct: 61 ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 111
Query: 581 NTPGKVLN-------WSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
P N S+ + + +A + +L+ F + + N ++ E K
Sbjct: 112 LRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 168
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
+ D+G++ I D GGK P W + L+D DV+SFG +L E
Sbjct: 169 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 222
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 44/232 (18%)
Query: 476 EELKEATNNFDMS-----AIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYTVRNX 526
E ++E D+S ++G G +G++ +GRL+ + VAI+ L YT R
Sbjct: 4 EAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGG--YTERQR 61
Query: 527 XXXXXXXXXX---XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP 583
HP+++ L G + V ++ EFM NG + + N
Sbjct: 62 REFLSEASIMGQFEHPNIIRLEGVVTNS--------MPVMILTEFMENGALDSFLRLND- 112
Query: 584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS 643
G+ + + +L G+A +++L + + + NIL+N + + K+SD+GLS
Sbjct: 113 GQ-FTVIQLVGMLRGIASGMRYLAEM---SYVHRDLAARNILVNSNLVCKVSDFGLSRFL 168
Query: 644 E-------DINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
E + +S+GGK P W + D +S+G ++ E ++
Sbjct: 169 EENSSDPTETSSLGGKI--PIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMS 218
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 40/231 (17%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
E+ + NN +G G++GK+ + G+ + VA++ L S+ +
Sbjct: 39 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 98
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF------RTHISEN 581
H ++V LLG C GG V ++ E+ G+ ++ + E
Sbjct: 99 ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKSRVLET 150
Query: 582 TPG-----KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD 636
P L+ + L VA+ + FL + + V N+LL +AK+ D
Sbjct: 151 DPAFAIANSTLSTRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGD 207
Query: 637 YGLS--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
+GL+ I+++ V G P W + ++ DV+S+G +L E
Sbjct: 208 FGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 258
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G+++ G T VAI+ L + H LV L
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPGN-MSPEAFLQEAQVMKKLRHEKLVQL------ 245
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
YAV +++V E+MS G+ + GK L + + + +A + ++
Sbjct: 246 ------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQIASGMAYVE 298
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
+ + ++ NIL+ E+ + K++D+GL + ED N +Q + P W +
Sbjct: 299 RM---NYVHRDLRAANILVGENLVCKVADFGLGRLIED-NEYTARQGAKFPIKWTAPEAA 354
Query: 664 ------LEDDVFSFGFMLLE 677
++ DV+SFG +L E
Sbjct: 355 LYGRFTIKSDVWSFGILLTE 374
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G ++ G N VAI+ + + + HP LV L G C++
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+ LV EFM +G ++ T + L + + V + + +L
Sbjct: 75 QA--------PICLVTEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAC 124
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
+ + + N L+ E+++ K+SD+G++ V +D + + P W ++
Sbjct: 125 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 181
Query: 665 ---EDDVFSFGFMLLE 677
+ DV+SFG ++ E
Sbjct: 182 YSSKSDVWSFGVLMWE 197
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
A + +E + A MS +G+GS+G +Y+G + E T VAI+ + +S +
Sbjct: 5 AADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 64
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
+ H H+V LLG G ++ E M+ G+ ++++
Sbjct: 65 ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 115
Query: 580 -----ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
EN P ++ + G +A + +L+ F + + N ++ E K
Sbjct: 116 LRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 172
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
+ D+G++ I D GGK P W + L+D DV+SFG +L E
Sbjct: 173 IGDFGMTRDIXETDXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 226
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 37/214 (17%)
Query: 487 MSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYT---VRNXXXXXXXXXXXXHP 539
+ ++G G +G++ GRL+ VAI+ L + YT R+ HP
Sbjct: 12 IEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAG--YTDKQRRDFLSEASIMGQFDHP 69
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
+++ L G V ++ E+M NG+ + +N G+ + + +L G+
Sbjct: 70 NIIHLEGVVT--------KCKPVMIITEYMENGSLDAFLRKND-GR-FTVIQLVGMLRGI 119
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGKQE 654
+++L + + + NIL+N + + K+SD+G+S V ED + GGK
Sbjct: 120 GSGMKYLSD---MSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKI- 175
Query: 655 DPNSWEMTKL--------EDDVFSFGFMLLESVA 680
P W + DV+S+G ++ E ++
Sbjct: 176 -PIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 208
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 61/300 (20%)
Query: 490 IMGEGSYGKLYKG-RLENGTSV----AIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
++G G++G +YKG + G +V AI+ L + K V HPHLV
Sbjct: 22 VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANV-EFMDEALIMASMDHPHLV 80
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG----KVLNWSERLAVLIG 598
LLG C+ + LV + M +G ++ E+ +LNW +
Sbjct: 81 RLLGVCLS---------PTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC------VQ 125
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE----DINSVGGKQE 654
+AK + +L + + N+L+ K++D+GL+ + E + N+ GGK
Sbjct: 126 IAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM- 181
Query: 655 DPNSWEMTKL--------EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ 706
P W + + DV+S+G + E + G +E D L E
Sbjct: 182 -PIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGG-KPYDGIPTREIPDLLEKGE--- 236
Query: 707 RLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF 766
RL P + KC ++ SRP F+++ AA+ A + QR+
Sbjct: 237 RLPQPPICTIDVYMVMV-------KCWMIDADSRPKFKEL------AAEFSRMARDPQRY 283
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 49/232 (21%)
Query: 484 NFDMSAIMGEGSYGKLYK----GRLENGTS--VAIRCLPSSKKYTVRNXXXXXXXXXXX- 536
N + ++G G++GK+ G + G S VA++ L + R
Sbjct: 46 NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQL 105
Query: 537 -XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF--------------------R 575
H ++V LLG C G ++L++E+ G+ +
Sbjct: 106 GSHENIVNLLGACTLSG--------PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQ 157
Query: 576 THISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS 635
+ E VL + + L VAK ++FL + + N+L+ ++ K+
Sbjct: 158 KRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKIC 214
Query: 636 DYGLS--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
D+GL+ I+S+ V G P W + ++ DV+S+G +L E
Sbjct: 215 DFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWE 266
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 61/300 (20%)
Query: 490 IMGEGSYGKLYKG-RLENGTSV----AIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
++G G++G +YKG + G +V AI+ L + K V HPHLV
Sbjct: 45 VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANV-EFMDEALIMASMDHPHLV 103
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG----KVLNWSERLAVLIG 598
LLG C+ + LV + M +G ++ E+ +LNW +
Sbjct: 104 RLLGVCLS---------PTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC------VQ 148
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE----DINSVGGKQE 654
+AK + +L + + N+L+ K++D+GL+ + E + N+ GGK
Sbjct: 149 IAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM- 204
Query: 655 DPNSWEMTKL--------EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ 706
P W + + DV+S+G + E + G +E D L E
Sbjct: 205 -PIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGG-KPYDGIPTREIPDLLEKGE--- 259
Query: 707 RLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF 766
RL P + KC ++ SRP F+++ AA+ A + QR+
Sbjct: 260 RLPQPPICTIDVYMVMV-------KCWMIDADSRPKFKEL------AAEFSRMARDPQRY 306
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
A + +E + A MS +G+GS+G +Y+G + E T VAI+ + +S +
Sbjct: 4 AADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 63
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
+ H H+V LLG G ++ E M+ G+ ++++
Sbjct: 64 ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 114
Query: 580 -----ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
EN P ++ + G +A + +L+ F + + N ++ E K
Sbjct: 115 LRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 171
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
+ D+G++ I D GGK P W + L+D DV+SFG +L E
Sbjct: 172 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 225
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 26/170 (15%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYT---VRNXXXXXXXXXXXXHP 539
++ + +G G++GK+ G+ E G VA++ L K + V HP
Sbjct: 17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHP 76
Query: 540 HLVCLLGHCIDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
H++ L Y V + +F+V E++S G +I +N G+ L+ E +
Sbjct: 77 HIIKL------------YQVISTPSDIFMVMEYVSGGELFDYICKN--GR-LDEKESRRL 121
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
+ V + H ++ + +K N+LL+ H AK++D+GLS + D
Sbjct: 122 FQQILSGVDYCHRHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSD 168
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
A + +E + A MS +G+GS+G +Y+G + E T VAI+ + +S +
Sbjct: 4 AADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 63
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
+ H H+V LLG G ++ E M+ G+ ++++
Sbjct: 64 ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 114
Query: 580 -----ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
EN P ++ + G +A + +L+ F + + N ++ E K
Sbjct: 115 LRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 171
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
+ D+G++ I D GGK P W + L+D DV+SFG +L E
Sbjct: 172 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 225
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
A + +E + A MS +G+GS+G +Y+G + E T VAI+ + +S +
Sbjct: 5 AADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 64
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
+ H H+V LLG G ++ E M+ G+ ++++
Sbjct: 65 ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 115
Query: 580 -----ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
EN P ++ + G +A + +L+ F + + N ++ E K
Sbjct: 116 LRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 172
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
+ D+G++ I D GGK P W + L+D DV+SFG +L E
Sbjct: 173 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 226
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 49 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 109 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 160
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 161 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 216
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 217 PESLTESKFSVASDVWSFGVVLYE 240
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 16 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 76 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 127
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 128 LGTK---RYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 183
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 184 PESLTESKFSVASDVWSFGVVLYE 207
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 16/104 (15%)
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNK-VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HPH++ L+ D Y + +FLV++ M G +++E L+ E +++
Sbjct: 159 HPHIITLI---------DSYESSSFMFLVFDLMRKGELFDYLTEKV---ALSEKETRSIM 206
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ +AV FLH I + +K NILL+++ +LSD+G S
Sbjct: 207 RSLLEAVSFLHANNI---VHRDLKPENILLDDNMQIRLSDFGFS 247
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 32/206 (15%)
Query: 490 IMGEGSYGKLYKGRLENGTS-----VAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
++G G +G++YKG L+ + VAI+ L + R H +
Sbjct: 51 VIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIR 110
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
L I + ++ E+M NG + E G+ + + + +L G+A ++
Sbjct: 111 LEGVIS-------KYKPMMIITEYMENGALDKFLREKD-GE-FSVLQLVGMLRGIAAGMK 161
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGKQEDPNSW 659
+L + + + NIL+N + + K+SD+GLS V ED + GGK P W
Sbjct: 162 YLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKI--PIRW 216
Query: 660 EMTKL--------EDDVFSFGFMLLE 677
+ DV+SFG ++ E
Sbjct: 217 TAPEAISYRKFTSASDVWSFGIVMWE 242
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 78 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 129
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 130 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 185
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 186 PESLTESKFSVASDVWSFGVVLYE 209
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 24 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 84 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 135
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 136 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 191
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 192 PESLTESKFSVASDVWSFGVVLYE 215
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 78 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 129
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 130 LGTK---RYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 185
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 186 PESLTESKFSVASDVWSFGVVLYE 209
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 23 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 83 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 134
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 135 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 190
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 191 PESLTESKFSVASDVWSFGVVLYE 214
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 25 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 85 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 136
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 137 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 192
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 193 PESLTESKFSVASDVWSFGVVLYE 216
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 81 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 132
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 133 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 188
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 189 PESLTESKFSVASDVWSFGVVLYE 212
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 17 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 77 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 128
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 129 LGTK---RYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 184
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 185 PESLTESKFSVASDVWSFGVVLYE 208
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 22 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 82 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 133
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 134 LGTK---RYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 189
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 190 PESLTESKFSVASDVWSFGVVLYE 213
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 37/227 (16%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXX 527
+E + A MS +G+GS+G +Y+G + E T VAI+ + +S + +
Sbjct: 3 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLN 62
Query: 528 XXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS------EN 581
H H+V LLG G ++ E M+ G+ ++++ EN
Sbjct: 63 EASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRSLRPEMEN 113
Query: 582 TPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
P ++ + G +A + +L+ F + + N ++ E K+ D+G++
Sbjct: 114 NPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMT 170
Query: 641 --IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
I D GGK P W + L+D DV+SFG +L E
Sbjct: 171 RDIXETDXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 217
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VAI+ L + + H LV L
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLKPGT-MSPESFLEEAQIMKKLKHDKLVQL------ 69
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
YAV +++V E+M+ G+ + + G+ L + + VA + ++
Sbjct: 70 ------YAVVSEEPIYIVTEYMNKGSLLDFLKDGE-GRALKLPNLVDMAAQVAAGMAYIE 122
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
+ + +++ NIL+ I K++D+GL+ + ED N +Q + P W +
Sbjct: 123 RM---NYIHRDLRSANILVGNGLICKIADFGLARLIED-NEXTARQGAKFPIKWTAPEAA 178
Query: 664 ------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 179 LYGRFTIKSDVWSFGILLTELVT 201
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ + + ++ + L + K +++
Sbjct: 81 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQAH--AERIDHIKLLQYTSQICKGMEY 132
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 133 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 188
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 189 PESLTESKFSVASDVWSFGVVLYE 212
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
+ + +G G++G++ + + +VA++ L ++
Sbjct: 27 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 86
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGKV---- 586
HL V LLG C GG + ++ EF GN T++ +E P KV
Sbjct: 87 IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPED 139
Query: 587 -----LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
L + VAK ++FL + + + NILL+E + K+ D+GL+
Sbjct: 140 LYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLAR 196
Query: 642 -VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
+ +D + V G P W + ++ DV+SFG +L E
Sbjct: 197 DIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 19 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 78
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 79 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 130
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 131 LGT---KRYIHRNLATRNILVENENRV-KIGDFGLTKVLPQDKEYYKVKEPGESPIFWYA 186
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 187 PESLTESKFSVASDVWSFGVVLYE 210
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYT 522
+P+ R + ++ ++ +GEG +G +++G EN +VAI+ + +
Sbjct: 379 MPSTRDYEIQR-----ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDS 433
Query: 523 VRNXXXXXXXXXXX-XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN 581
VR HPH+V L+G + N V+++ E + G R+ +
Sbjct: 434 VREKFLQEALTMRQFDHPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL--- 481
Query: 582 TPGKVLNWSERLAVLI----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
+V +S LA LI ++ A+ +L + F + + N+L++ + KL D+
Sbjct: 482 ---QVRKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDF 535
Query: 638 GLSIVSED 645
GLS ED
Sbjct: 536 GLSRYMED 543
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 18/168 (10%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRC--LPSSKK----YTVRNXXXXXXXX 533
AT+ ++ A +G G+YG +YK R +G VA++ +P+ ++ TVR
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVRE-VALLRRL 60
Query: 534 XXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
HP++V L+ C R D + KV LV+E + + RT++ + P + +E +
Sbjct: 61 EAFEHPNVVRLMDVC--ATSRTDREI-KVTLVFEHVDQ-DLRTYLDKAPPPGLP--AETI 114
Query: 594 AVLI-GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
L+ + + FLH I + +K NIL+ KL+D+GL+
Sbjct: 115 KDLMRQFLRGLDFLHANCI---VHRDLKPENILVTSGGTVKLADFGLA 159
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 18/168 (10%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRC--LPSSKK----YTVRNXXXXXXXX 533
AT+ ++ A +G G+YG +YK R +G VA++ +P+ ++ TVR
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVRE-VALLRRL 60
Query: 534 XXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
HP++V L+ C R D + KV LV+E + + RT++ + P + +E +
Sbjct: 61 EAFEHPNVVRLMDVC--ATSRTDREI-KVTLVFEHVDQ-DLRTYLDKAPPPGLP--AETI 114
Query: 594 AVLI-GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
L+ + + FLH I + +K NIL+ KL+D+GL+
Sbjct: 115 KDLMRQFLRGLDFLHANCI---VHRDLKPENILVTSGGTVKLADFGLA 159
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 18/168 (10%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRC--LPSSKK----YTVRNXXXXXXXX 533
AT+ ++ A +G G+YG +YK R +G VA++ +P+ ++ TVR
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVRE-VALLRRL 60
Query: 534 XXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
HP++V L+ C R D + KV LV+E + + RT++ + P + +E +
Sbjct: 61 EAFEHPNVVRLMDVC--ATSRTDREI-KVTLVFEHVDQ-DLRTYLDKAPPPGLP--AETI 114
Query: 594 AVLI-GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
L+ + + FLH I + +K NIL+ KL+D+GL+
Sbjct: 115 KDLMRQFLRGLDFLHANCI---VHRDLKPENILVTSGGTVKLADFGLA 159
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 96 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 147
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 148 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 203
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 204 PESLTESKFSVASDVWSFGVVLYE 227
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
V EA G + CR+ ++ LKE + + A+M E K + G
Sbjct: 34 VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 79
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
H ++V LLG C GG + ++ EF GN
Sbjct: 80 ---------------------HHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLS 111
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
T++ +E P KV L + VAK ++FL + + +
Sbjct: 112 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 168
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
NILL+E + K+ D+GL+ + +D + V G P W + ++ DV+SFG
Sbjct: 169 NILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 228
Query: 673 FMLLE 677
+L E
Sbjct: 229 VLLWE 233
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 96 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 147
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 148 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 203
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 204 PESLTESKFSVASDVWSFGVVLYE 227
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
+G+G++G + R + G VA++ L S + +R+ H ++V
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
G C G R+ + L+ E++ G+ R ++ ++ + ++ + L + K +++
Sbjct: 78 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 129
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
L T + + + T NIL+ NE+R+ K+ D+GL+ V ++ V E P W
Sbjct: 130 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEFFKVKEPGESPIFWYA 185
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ + DV+SFG +L E
Sbjct: 186 PESLTESKFSVASDVWSFGVVLYE 209
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
+ + +G G++G++ + + +VA++ L ++
Sbjct: 27 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 86
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGKV---- 586
HL V LLG C GG + ++ EF GN T++ +E P KV
Sbjct: 87 IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPED 139
Query: 587 -----LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
L + VAK ++FL + + + NILL+E + K+ D+GL+
Sbjct: 140 LYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLAR 196
Query: 642 -VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
+ +D + V G P W + ++ DV+SFG +L E
Sbjct: 197 DIYKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 27/227 (11%)
Query: 462 LGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY 521
LGS+ P+ + + +G G +G + G+ VAI+ +
Sbjct: 3 LGSKNAPSTAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM- 61
Query: 522 TVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN 581
+ H LV L G C +F++ E+M+NG ++ E
Sbjct: 62 SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ--------RPIFIITEYMANGCLLNYLREM 113
Query: 582 TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS- 640
+ L + V +A+++L + F + + N L+N+ + K+SD+GLS
Sbjct: 114 R--HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR 168
Query: 641 --IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE 677
+ E +SVG K P W ++ + D+++FG ++ E
Sbjct: 169 YVLDDEYTSSVGSKF--PVRWSPPEVLMYSKFSSKSDIWAFGVLMWE 213
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
V EA G + CR+ ++ LKE + + A+M E K + G
Sbjct: 34 VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 79
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
H ++V LLG C GG + ++ EF GN
Sbjct: 80 ---------------------HHLNVVNLLGACTKPGG-------PLMVITEFCKFGNLS 111
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
T++ +E P KV L + VAK ++FL + + +
Sbjct: 112 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 168
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
NILL+E + K+ D+GL+ + +D + V G P W + ++ DV+SFG
Sbjct: 169 NILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 228
Query: 673 FMLLE 677
+L E
Sbjct: 229 VLLWE 233
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+G+G++GK+YK + E G A + + + + + + HP++V LLG
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 78
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
G K++++ EF G + E G L + V + +A+ FLH+
Sbjct: 79 HDG--------KLWIMIEFCPGGAVDAIMLELDRG--LTEPQIQVVCRQMLEALNFLHSK 128
Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
I + +K N+L+ +L+D+G+S
Sbjct: 129 RI---IHRDLKAGNVLMTLEGDIRLADFGVS 156
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 37/227 (16%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXX 527
+E + A MS +G+GS+G +Y+G + E T VAI+ + +S + +
Sbjct: 5 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLN 64
Query: 528 XXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS------EN 581
H H+V LLG G ++ E M+ G+ ++++ EN
Sbjct: 65 EASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRSLRPEMEN 115
Query: 582 TPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
P ++ + G +A + +L+ F + + N ++ E K+ D+G++
Sbjct: 116 NPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMT 172
Query: 641 --IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
I D GGK P W + L+D DV+SFG +L E
Sbjct: 173 RDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 219
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTV---RNXXXXXXXXX 534
+ +++ +G+G+YG ++K G VA++ + + + + R
Sbjct: 5 RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTE 64
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
H ++V LL RD V+LV+++M T + +L +
Sbjct: 65 LSGHENIVNLLNVLRADNDRD------VYLVFDYME-----TDLHAVIRANILEPVHKQY 113
Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
V+ + K +++LH+G G + +K +NILLN K++D+GLS
Sbjct: 114 VVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLS 156
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 40/230 (17%)
Query: 474 TLEELKEATNNF-DMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYTVRNXXX 528
++E KE ++ + ++G G +G++ +GRL+ + VAI+ L YT R
Sbjct: 4 SMEFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGG--YTERQRRE 61
Query: 529 XXXXXXXX---XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
HP+++ L G + V ++ EFM NG + + N G+
Sbjct: 62 FLSEASIMGQFEHPNIIRLEGVVTNS--------MPVMILTEFMENGALDSFLRLND-GQ 112
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
+ + +L G+A +++L + + + NIL+N + + K+SD+GLS E+
Sbjct: 113 -FTVIQLVGMLRGIASGMRYLAEM---SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEE 168
Query: 646 -------INSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
+S+GGK P W + D +S+G ++ E ++
Sbjct: 169 NSSDPTYTSSLGGKI--PIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMS 216
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G + G+ VAI+ + + H LV L G C
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTK 70
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+F++ E+M+NG ++ E + L + V +A+++L +
Sbjct: 71 Q--------RPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKDVCEAMEYLES-- 118
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL--- 664
F + + N L+N+ + K+SD+GLS + E +SVG K P W ++
Sbjct: 119 -KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF--PVRWSPPEVLMY 175
Query: 665 -----EDDVFSFGFMLLE 677
+ D+++FG ++ E
Sbjct: 176 SKFSSKSDIWAFGVLMWE 193
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G + G+ VAI+ + + H LV L G C
Sbjct: 16 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTK 74
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+F++ E+M+NG ++ E + L + V +A+++L +
Sbjct: 75 Q--------RPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKDVCEAMEYLES-- 122
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL--- 664
F + + N L+N+ + K+SD+GLS + E +SVG K P W ++
Sbjct: 123 -KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF--PVRWSPPEVLMY 179
Query: 665 -----EDDVFSFGFMLLE 677
+ D+++FG ++ E
Sbjct: 180 SKFSSKSDIWAFGVLMWE 197
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 32/188 (17%)
Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYT 522
+P+ R + ++ ++ +GEG +G +++G EN +VAI+ + +
Sbjct: 379 MPSTRDYEIQR-----ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDS 433
Query: 523 VRNXXXXXXXXXXX-XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN 581
VR HPH+V L+G + N V+++ E + G R+ +
Sbjct: 434 VREKFLQEALTMRQFDHPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL--- 481
Query: 582 TPGKVLNWSERLAVLI----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
+V +S LA LI ++ A+ +L + F + + N+L++ KL D+
Sbjct: 482 ---QVRKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSATDCVKLGDF 535
Query: 638 GLSIVSED 645
GLS ED
Sbjct: 536 GLSRYMED 543
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+G+G++GK+YK + E G A + + + + + + HP++V LLG
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 86
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
G K++++ EF G + E G L + V + +A+ FLH+
Sbjct: 87 HDG--------KLWIMIEFCPGGAVDAIMLELDRG--LTEPQIQVVCRQMLEALNFLHSK 136
Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
I + +K N+L+ +L+D+G+S
Sbjct: 137 RI---IHRDLKAGNVLMTLEGDIRLADFGVS 164
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 37/205 (18%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCL-PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+G G +G+++ T VA++ + P S +V H LV L H +
Sbjct: 23 LGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKL--HAV 78
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHI-----SENTPGKVLNWSERLAVLIGVAKAVQ 604
++++ EFM+ G+ + S+ K++++S ++A + +
Sbjct: 79 -------VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN 131
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMT 662
++H + + NIL++ + K++D+GL+ V ED N ++ + P W
Sbjct: 132 YIHRDL---------RAANILVSASLVCKIADFGLARVIED-NEYTAREGAKFPIKWTAP 181
Query: 663 K--------LEDDVFSFGFMLLESV 679
+ ++ DV+SFG +L+E V
Sbjct: 182 EAINFGSFTIKSDVWSFGILLMEIV 206
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G + G+ VAI+ + + H LV L G C
Sbjct: 23 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTK 81
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+F++ E+M+NG ++ E + L + V +A+++L +
Sbjct: 82 Q--------RPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLES-- 129
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL--- 664
F + + N L+N+ + K+SD+GLS + E +SVG K P W ++
Sbjct: 130 -KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF--PVRWSPPEVLMY 186
Query: 665 -----EDDVFSFGFMLLE 677
+ D+++FG ++ E
Sbjct: 187 SKFSSKSDIWAFGVLMWE 204
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
V EA G + CR+ ++ LKE + + A+M E K + G
Sbjct: 43 VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 88
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
H ++V LLG C GG + ++ EF GN
Sbjct: 89 ---------------------HHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLS 120
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
T++ +E P KV L + VAK ++FL + + +
Sbjct: 121 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 177
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
NILL+E + K+ D+GL+ + +D + V G P W + ++ DV+SFG
Sbjct: 178 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 237
Query: 673 FMLLE 677
+L E
Sbjct: 238 VLLWE 242
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G++ K + + +VA++ L +++K H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 103 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 209 NIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G + G+ VAI+ + + H LV L G C
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+F++ E+M+NG ++ E + L + V +A+++L +
Sbjct: 76 Q--------RPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLES-- 123
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL--- 664
F + + N L+N+ + K+SD+GLS + E +SVG K P W ++
Sbjct: 124 -KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF--PVRWSPPEVLMY 180
Query: 665 -----EDDVFSFGFMLLE 677
+ D+++FG ++ E
Sbjct: 181 SKFSSKSDIWAFGVLMWE 198
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 114/298 (38%), Gaps = 53/298 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
+ ++ +G G++G++ + + +VA++ L ++
Sbjct: 27 DRLNLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIH 86
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGK----- 585
HL V LLG C GG + ++ EF GN T++ +E P K
Sbjct: 87 IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKD 139
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI-VSE 644
L + VAK ++FL + + + NILL+E + K+ D+GL+ + +
Sbjct: 140 FLTLEHLIXYSFQVAKGMEFLASR---KXIHRDLAARNILLSEKNVVKIXDFGLARDIYK 196
Query: 645 DINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE 695
D + V G P W + ++ DV+SFG +L E + + G + EE
Sbjct: 197 DPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE-IFSLGASPYPGVKIDEE 255
Query: 696 LDSLNSQEGRQRLVD---PVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNL 750
+ R R D P + T C E RP+F +++ +L
Sbjct: 256 FXRRLKEGTRMRAPDYTTPEMYQTML------------DCWHGEPSQRPTFSELVEHL 301
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G++ K + + +VA++ L +++K H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 103 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 209 NIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
V EA G + CR+ ++ LKE + + A+M E K + G
Sbjct: 34 VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 79
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
H ++V LLG C GG + ++ EF GN
Sbjct: 80 ---------------------HHLNVVNLLGACTKPGG-------PLMVITEFCKFGNLS 111
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
T++ +E P KV L + VAK ++FL + + +
Sbjct: 112 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 168
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
NILL+E + K+ D+GL+ + +D + V G P W + ++ DV+SFG
Sbjct: 169 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 228
Query: 673 FMLLE 677
+L E
Sbjct: 229 VLLWE 233
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 37/222 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
+ ++ +G G++G++ + + +VA++ L ++
Sbjct: 27 DRLNLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIH 86
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGK----- 585
HL V LLG C GG + ++ EF GN T++ +E P K
Sbjct: 87 IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKD 139
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI-VSE 644
L + VAK ++FL + + + NILL+E + K+ D+GL+ + +
Sbjct: 140 FLTLEHLICYSFQVAKGMEFLASR---KXIHRDLAARNILLSEKNVVKICDFGLARDIYK 196
Query: 645 DINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
D + V G P W + ++ DV+SFG +L E
Sbjct: 197 DPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 238
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
V EA G + CR+ ++ LKE + + A+M E K + G
Sbjct: 34 VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 79
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
H ++V LLG C GG + ++ EF GN
Sbjct: 80 ---------------------HHLNVVNLLGACTKPGG-------PLMVITEFCKFGNLS 111
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
T++ +E P KV L + VAK ++FL + + +
Sbjct: 112 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 168
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
NILL+E + K+ D+GL+ + +D + V G P W + ++ DV+SFG
Sbjct: 169 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 228
Query: 673 FMLLE 677
+L E
Sbjct: 229 VLLWE 233
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 40/225 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
+ ++ +G G++G++ + + +VA++ L ++
Sbjct: 28 DRLNLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 87
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGKV---- 586
HL V LLG C GG + ++ EF GN T++ +E P K
Sbjct: 88 IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKTPEDL 140
Query: 587 ----LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI- 641
L + VAK ++FL + + + NILL+E + K+ D+GL+
Sbjct: 141 YKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLARD 197
Query: 642 VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
+ +D + V G P W + ++ DV+SFG +L E
Sbjct: 198 IXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G++ K + + +VA++ L +++K H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 103 IITLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 209 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
V EA G + CR+ ++ LKE + + A+M E K + G
Sbjct: 80 VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 125
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
H ++V LLG C GG + ++ EF GN
Sbjct: 126 ---------------------HHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLS 157
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
T++ +E P KV L + VAK ++FL + + +
Sbjct: 158 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 214
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
NILL+E + K+ D+GL+ + +D + V G P W + ++ DV+SFG
Sbjct: 215 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 274
Query: 673 FMLLE 677
+L E
Sbjct: 275 VLLWE 279
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 37/205 (18%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCL-PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+G G +G+++ T VA++ + P S +V H LV L H +
Sbjct: 196 LGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKL--HAV 251
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHI-----SENTPGKVLNWSERLAVLIGVAKAVQ 604
++++ EFM+ G+ + S+ K++++S ++A + +
Sbjct: 252 -------VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN 304
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMT 662
++H ++ NIL++ + K++D+GL+ V ED N ++ + P W
Sbjct: 305 YIH---------RDLRAANILVSASLVCKIADFGLARVIED-NEYTAREGAKFPIKWTAP 354
Query: 663 K--------LEDDVFSFGFMLLESV 679
+ ++ DV+SFG +L+E V
Sbjct: 355 EAINFGSFTIKSDVWSFGILLMEIV 379
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 92/233 (39%), Gaps = 42/233 (18%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
E+ + NN +G G++GK+ + G+ + VA++ L S+ +
Sbjct: 39 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 98
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE------- 580
H ++V LLG C GG V ++ E+ G+ +
Sbjct: 99 ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKRPPGLE 150
Query: 581 ------NTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL 634
+ P + L+ + L VA+ + FL + + V N+LL +AK+
Sbjct: 151 YSYNPSHNPEEQLSSRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKI 207
Query: 635 SDYGLS--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
D+GL+ I+++ V G P W + ++ DV+S+G +L E
Sbjct: 208 GDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 260
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 39/224 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
+ + +G G++G++ + + +VA++ L ++
Sbjct: 29 DRLKLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIH 88
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGK----- 585
HL V LLG C GG + ++ EF GN T++ +E P K
Sbjct: 89 IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKPEDLY 141
Query: 586 --VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI-V 642
L + VAK ++FL + + + NILL+E + K+ D+GL+ +
Sbjct: 142 KDFLTLEHLIXYSFQVAKGMEFLASR---KXIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 643 SEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
+D + V G P W + ++ DV+SFG +L E
Sbjct: 199 XKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 92/211 (43%), Gaps = 33/211 (15%)
Query: 487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLG 546
+S +G GS+G +YKG+ +V I + + H +++ +G
Sbjct: 40 LSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMG 99
Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-ENTPGKVLNWSERLAVLIGVAKAVQF 605
+ +D+ A+ V ++ + H+ + T ++ + + + A+ + +
Sbjct: 100 YMT----KDNLAI-----VTQWCEGSSLYKHLHVQETKFQMF---QLIDIARQTAQGMDY 147
Query: 606 LHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ-EDPNS---W-- 659
LH I + +K+NNI L+E K+ D+GL+ V + G +Q E P W
Sbjct: 148 LHAKNI---IHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS--GSQQVEQPTGSVLWMA 202
Query: 660 -EMTKLED--------DVFSFGFMLLESVAG 681
E+ +++D DV+S+G +L E + G
Sbjct: 203 PEVIRMQDNNPFSFQSDVYSYGIVLYELMTG 233
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G+ L K + T VA++ L S ++K H +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
++ LLG C G ++++ E+ S GN R ++ + P + L
Sbjct: 96 IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQL 147
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ VA+ +++L + + + N+L+ E + K++D+GL + DI+
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 201
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
+ ++ P W + + DV+SFG +L E
Sbjct: 202 HIDXXKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 244
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRC------------LPSSKKYTVRNXX 527
AT+ ++ A +G G+YG +YK R +G VA++ LP S TVR
Sbjct: 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPIS---TVRE-V 62
Query: 528 XXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
HP++V L+ C R D + KV LV+E + + RT++ + P +
Sbjct: 63 ALLRRLEAFEHPNVVRLMDVC--ATSRTDREI-KVTLVFEHVDQ-DLRTYLDKAPPPGLP 118
Query: 588 NWSERLAVLI-GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+E + L+ + + FLH I + +K NIL+ KL+D+GL+
Sbjct: 119 --AETIKDLMRQFLRGLDFLHANCI---VHRDLKPENILVTSGGTVKLADFGLA 167
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVR 524
F +E + + + +G+GS+G +Y+G + E T VA++ + +S + +
Sbjct: 4 FVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIE 63
Query: 525 NXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------ 578
H H+V LLG G +V E M++G+ ++++
Sbjct: 64 FLNEASVMKGFTCH-HVVRLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPE 114
Query: 579 SENTPGK-VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
+EN PG+ E + + +A + +L+ F + + N ++ K+ D+
Sbjct: 115 AENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 171
Query: 638 GLS--IVSEDINSVGGKQEDPNSWEMTK-LEDDVF-------SFGFMLLE 677
G++ I D GGK P W + L+D VF SFG +L E
Sbjct: 172 GMTRDIXETDXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 221
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVR 524
F +E + + + +G+GS+G +Y+G + E T VA++ + +S + +
Sbjct: 7 FVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIE 66
Query: 525 NXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------ 578
H H+V LLG G +V E M++G+ ++++
Sbjct: 67 FLNEASVMKGFTCH-HVVRLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPE 117
Query: 579 SENTPGK-VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
+EN PG+ E + + +A + +L+ F + + N ++ K+ D+
Sbjct: 118 AENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 174
Query: 638 GLS--IVSEDINSVGGKQEDPNSWEMTK-LEDDVF-------SFGFMLLE 677
G++ I D GGK P W + L+D VF SFG +L E
Sbjct: 175 GMTRDIXETDXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 224
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
++ +GEG +G +++G EN +VAI+ + +VR
Sbjct: 7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH+V L+G + N V+++ E + G R+ + +V +S LA LI
Sbjct: 67 HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 111
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
++ A+ +L + F + + N+L++ + KL D+GLS ED
Sbjct: 112 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 160
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 37/230 (16%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVR 524
+ +E + A MS +G+GS+G +Y+G + E T VAI+ + +S + +
Sbjct: 2 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIE 61
Query: 525 NXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS----- 579
H H+V LLG G ++ E M+ G+ ++++
Sbjct: 62 FLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRSLRPE 112
Query: 580 -ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
EN P ++ + G +A + +L+ F + + N + E K+ D+
Sbjct: 113 MENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCXVAEDFTVKIGDF 169
Query: 638 GLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
G++ I D GGK P W + L+D DV+SFG +L E
Sbjct: 170 GMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 219
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
++ +GEG +G +++G EN +VAI+ + +VR
Sbjct: 10 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH+V L+G + N V+++ E + G R+ + +V +S LA LI
Sbjct: 70 HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 114
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
++ A+ +L + F + + N+L++ + KL D+GLS ED
Sbjct: 115 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 163
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
++ +GEG +G +++G EN +VAI+ + +VR
Sbjct: 12 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 71
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH+V L+G + N V+++ E + G R+ + +V +S LA LI
Sbjct: 72 HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 116
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
++ A+ +L + F + + N+L++ + KL D+GLS ED
Sbjct: 117 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 165
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
++ +GEG +G +++G EN +VAI+ + +VR
Sbjct: 38 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 97
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH+V L+G + N V+++ E + G R+ + +V +S LA LI
Sbjct: 98 HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 142
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
++ A+ +L + F + + N+L++ + KL D+GLS ED
Sbjct: 143 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 191
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
++ +GEG +G +++G EN +VAI+ + +VR
Sbjct: 13 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 72
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH+V L+G + N V+++ E + G R+ + +V +S LA LI
Sbjct: 73 HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 117
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
++ A+ +L + F + + N+L++ + KL D+GLS ED
Sbjct: 118 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 166
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
++ +GEG +G +++G EN +VAI+ + +VR
Sbjct: 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 74
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH+V L+G + N V+++ E + G R+ + +V +S LA LI
Sbjct: 75 HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 119
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
++ A+ +L + F + + N+L++ + KL D+GLS ED
Sbjct: 120 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 491 MGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVC 543
+GE +GK+YKG L E +VAI+ L + +R HP++VC
Sbjct: 34 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 93
Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWS 590
LLG + +++ + S+G+ + +P L
Sbjct: 94 LLGVVTKD--------QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 145
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL--SIVSEDINS 648
+ + ++ +A +++L + + + + T N+L+ + K+SD GL + + D
Sbjct: 146 DFVHLVAQIAAGMEYLSSHHV---VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYK 202
Query: 649 VGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
+ G P W + ++ D++S+G +L E
Sbjct: 203 LLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWE 239
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 36/213 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
++ +GEG +G +++G EN +VAI+ + +VR
Sbjct: 10 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH+V L+G + N V+++ E + G R+ + +V +S LA LI
Sbjct: 70 HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLI 114
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV-GGK 652
++ A+ +L + F + + N+L++ + KL D+GLS ED K
Sbjct: 115 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTXXKASK 171
Query: 653 QEDPNSWEMTK--------LEDDVFSFGFMLLE 677
+ P W + DV+ FG + E
Sbjct: 172 GKLPIKWMAPESINFRRFTSASDVWMFGVCMWE 204
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
++ +GEG +G +++G EN +VAI+ + +VR
Sbjct: 10 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH+V L+G + N V+++ E + G R+ + +V +S LA LI
Sbjct: 70 HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 114
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
++ A+ +L + F + + N+L++ + KL D+GLS ED
Sbjct: 115 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 163
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 491 MGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVC 543
+GE +GK+YKG L E +VAI+ L + +R HP++VC
Sbjct: 17 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76
Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWS 590
LLG + +++ + S+G+ + +P L
Sbjct: 77 LLGVVTKD--------QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 128
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL--SIVSEDINS 648
+ + ++ +A +++L + + + + T N+L+ + K+SD GL + + D
Sbjct: 129 DFVHLVAQIAAGMEYLSSHHV---VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYK 185
Query: 649 VGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
+ G P W + ++ D++S+G +L E
Sbjct: 186 LLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWE 222
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 37/212 (17%)
Query: 491 MGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+G+GS+G +Y+G + E T VA++ + +S + + H H+V
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-HVV 83
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGK-VLNWSERLAV 595
LLG G +V E M++G+ ++++ +EN PG+ E + +
Sbjct: 84 RLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQM 135
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ 653
+A + +L+ F + + N ++ K+ D+G++ I D GGK
Sbjct: 136 AAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKG 192
Query: 654 EDPNSWEMTK-LEDDVF-------SFGFMLLE 677
P W + L+D VF SFG +L E
Sbjct: 193 LLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 224
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G++ K + + +VA++ L +++K H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 103 IIHLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 209 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVR 524
F +E + + + +G+GS+G +Y+G + E T VA++ + +S + +
Sbjct: 7 FVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIE 66
Query: 525 NXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------ 578
H H+V LLG G +V E M++G+ ++++
Sbjct: 67 FLNEASVMKGFTCH-HVVRLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPE 117
Query: 579 SENTPGK-VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
+EN PG+ E + + +A + +L+ F + + N ++ K+ D+
Sbjct: 118 AENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 174
Query: 638 GLS--IVSEDINSVGGKQEDPNSWEMTK-LEDDVF-------SFGFMLLE 677
G++ I D GGK P W + L+D VF SFG +L E
Sbjct: 175 GMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 224
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 30/204 (14%)
Query: 491 MGEGSYGK--LYKGRLEN---GTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVCL 544
+GEG +GK LY N G VA++ L +R+ H H+V
Sbjct: 16 LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 75
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
G C D G + V LV E++ G+ R ++ P + ++ L + + +
Sbjct: 76 KGCCEDQGEKS------VQLVMEYVPLGSLRDYL----PRHCVGLAQLLLFAQQICEGMA 125
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS---WEM 661
+LH + + + N+LL+ R+ K+ D+GL+ + + +ED +S W
Sbjct: 126 YLHA---QHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA 182
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ DV+SFG L E
Sbjct: 183 PECLKECKFYYASDVWSFGVTLYE 206
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 37/212 (17%)
Query: 491 MGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+G+GS+G +Y+G + E T VA++ + +S + + H H+V
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-HVV 83
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGK-VLNWSERLAV 595
LLG G +V E M++G+ ++++ +EN PG+ E + +
Sbjct: 84 RLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQM 135
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ 653
+A + +L+ F + + N ++ K+ D+G++ I D GGK
Sbjct: 136 AAEIADGMAYLNAK---KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKG 192
Query: 654 EDPNSWEMTK-LEDDVF-------SFGFMLLE 677
P W + L+D VF SFG +L E
Sbjct: 193 LLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 224
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G+ L K + T VA++ L S ++K H +
Sbjct: 25 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 84
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
++ LLG C G ++++ E+ S GN R ++ + P + L
Sbjct: 85 IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 136
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ VA+ +++L + + + N+L+ E + K++D+GL + DI+
Sbjct: 137 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 190
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
+ ++ P W + + DV+SFG +L E
Sbjct: 191 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 233
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 30/204 (14%)
Query: 491 MGEGSYGK--LYKGRLEN---GTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVCL 544
+GEG +GK LY N G VA++ L +R+ H H+V
Sbjct: 17 LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 76
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
G C D G + V LV E++ G+ R ++ P + ++ L + + +
Sbjct: 77 KGCCEDQGEKS------VQLVMEYVPLGSLRDYL----PRHCVGLAQLLLFAQQICEGMA 126
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS---WEM 661
+LH + + + N+LL+ R+ K+ D+GL+ + + +ED +S W
Sbjct: 127 YLHA---QHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA 183
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ DV+SFG L E
Sbjct: 184 PECLKECKFYYASDVWSFGVTLYE 207
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 16 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 75
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 76 QDELDFLMEALIISKLNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 127
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 128 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 184
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 185 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 244
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 245 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 291
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 292 NFAIILERIEYCTQ 305
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 37/212 (17%)
Query: 491 MGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+G+GS+G +Y+G + E T VA++ + +S + + H H+V
Sbjct: 26 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-HVV 84
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGK-VLNWSERLAV 595
LLG G +V E M++G+ ++++ +EN PG+ E + +
Sbjct: 85 RLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQM 136
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ 653
+A + +L+ F + + N ++ K+ D+G++ I D GGK
Sbjct: 137 AAEIADGMAYLNAK---KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKG 193
Query: 654 EDPNSWEMTK-LEDDVF-------SFGFMLLE 677
P W + L+D VF SFG +L E
Sbjct: 194 LLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 225
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G+ L K + T VA++ L S ++K H +
Sbjct: 21 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 80
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
++ LLG C G ++++ E+ S GN R ++ + P + L
Sbjct: 81 IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQL 132
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ VA+ +++L + + + N+L+ E + K++D+GL + DI+
Sbjct: 133 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 186
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
+ ++ P W + + DV+SFG +L E
Sbjct: 187 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 229
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 30 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 89
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 90 QDELDFLMEALIISKLNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 141
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 142 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 198
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 199 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 258
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 259 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 305
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 306 NFAIILERIEYCTQ 319
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G+ L K + T VA++ L S ++K H +
Sbjct: 29 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 88
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
++ LLG C G ++++ E+ S GN R ++ + P + L
Sbjct: 89 IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 140
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ VA+ +++L + + + N+L+ E + K++D+GL + DI+
Sbjct: 141 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 194
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
+ ++ P W + + DV+SFG +L E
Sbjct: 195 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 237
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 22 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 81
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 82 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 133
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 134 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 190
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 191 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 250
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 251 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 297
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 298 NFAIILERIEYCTQ 311
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G+ L K + T VA++ L S ++K H +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
++ LLG C G ++++ E+ S GN R ++ + P + L
Sbjct: 96 IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQL 147
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ VA+ +++L + + + N+L+ E + K++D+GL + DI+
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 201
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
+ ++ P W + + DV+SFG +L E
Sbjct: 202 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 244
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 32 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 91
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 92 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 143
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 144 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 200
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 201 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 260
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 261 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 307
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 308 NFAIILERIEYCTQ 321
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 82/197 (41%), Gaps = 25/197 (12%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G + G+ VAI+ + + H LV L G C
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+F++ E+M+NG ++ E + L + V +A+++L +
Sbjct: 76 Q--------RPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLES-- 123
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL---- 664
F + + N L+N+ + K+SD+GLS ++ ++ S G + P W ++
Sbjct: 124 -KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSK-FPVRWSPPEVLMYS 181
Query: 665 ----EDDVFSFGFMLLE 677
+ D+++FG ++ E
Sbjct: 182 KFSSKSDIWAFGVLMWE 198
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G+ L K + T VA++ L S ++K H +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
++ LLG C G ++++ E+ S GN R ++ + P + L
Sbjct: 96 IINLLGACTQDG--------PLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQL 147
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ VA+ +++L + + + N+L+ E + K++D+GL + DI+
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 201
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
+ ++ P W + + DV+SFG +L E
Sbjct: 202 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 244
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 33/232 (14%)
Query: 463 GSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYT 522
GS+ + + +E + + +G G +G+++ G T VA++ L +
Sbjct: 1 GSQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSL-KQGSMS 59
Query: 523 VRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHIS 579
H LV L YAV ++++ E+M NG+ +
Sbjct: 60 PDAFLAEANLMKQLQHQRLVRL------------YAVVTQEPIYIITEYMENGSLVDFL- 106
Query: 580 ENTP-GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
TP G L ++ L + +A+ + F+ + + ++ NIL+++ K++D+G
Sbjct: 107 -KTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFG 162
Query: 639 LSIVSEDINSVGGKQ--EDPNSWEMTK--------LEDDVFSFGFMLLESVA 680
L+ + ED N ++ + P W + ++ DV+SFG +L E V
Sbjct: 163 LARLIED-NEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 213
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 15 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 74
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 75 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 126
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 127 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 183
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 243
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 244 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 290
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 291 NFAIILERIEYCTQ 304
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 37/212 (17%)
Query: 491 MGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+G+GS+G +Y+G + E T VA++ + +S + + H H+V
Sbjct: 24 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-HVV 82
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGK-VLNWSERLAV 595
LLG G +V E M++G+ ++++ +EN PG+ E + +
Sbjct: 83 RLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQM 134
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ 653
+A + +L+ F + + N ++ K+ D+G++ I D GGK
Sbjct: 135 AAEIADGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKG 191
Query: 654 EDPNSWEMTK-LEDDVF-------SFGFMLLE 677
P W + L+D VF SFG +L E
Sbjct: 192 LLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 223
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G+ L K + T VA++ L S ++K H +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
++ LLG C G ++++ E+ S GN R ++ + P + L
Sbjct: 96 IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 147
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ VA+ +++L + + + N+L+ E + K++D+GL + DI+
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 201
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
+ ++ P W + + DV+SFG +L E
Sbjct: 202 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 244
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G+ L K + T VA++ L S ++K H +
Sbjct: 28 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 87
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
++ LLG C G ++++ E+ S GN R ++ + P + L
Sbjct: 88 IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 139
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ VA+ +++L + + + N+L+ E + K++D+GL + DI+
Sbjct: 140 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 193
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
+ ++ P W + + DV+SFG +L E
Sbjct: 194 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 236
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 30 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 89
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 90 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILMELMAGGDLKSFLRE 141
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 142 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 198
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 199 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 258
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 259 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 305
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 306 NFAIILERIEYCTQ 319
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 15 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 74
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 75 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILMELMAGGDLKSFLRE 126
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 127 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 183
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 243
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 244 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 290
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 291 NFAIILERIEYCTQ 304
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRN------XXXXXXXX 533
+NF+ ++G+GS+GK+ R+ E G A++ L K +++
Sbjct: 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVL--KKDVILQDDDVECTMTEKRILS 78
Query: 534 XXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
HP L L C +++F V EF++ G+ HI ++ + + +
Sbjct: 79 LARNHPFLTQLFC-CFQ-------TPDRLFFVMEFVNGGDLMFHIQKS---RRFDEARAR 127
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
+ A+ FLH G +K +N+LL+ KL+D+G+
Sbjct: 128 FYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGM 170
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 7 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 66
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 67 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 118
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 119 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 175
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 176 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 235
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 236 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 282
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 283 NFAIILERIEYCTQ 296
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG +G++ K + + +VA++ L +++K H +
Sbjct: 89 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 148
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 149 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 200
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 201 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 254
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 255 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 297
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSSKKYTVR-----NXXXXXXX 532
K + F++ ++G+GS+GK++ + +G+ + + KK T++
Sbjct: 20 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDI 79
Query: 533 XXXXXHPHLVCLLGHCIDGGGRDDYAVN---KVFLVYEFMSNGNFRTHISENTPGKVLNW 589
HP +V L YA K++L+ +F+ G+ T +S+ +
Sbjct: 80 LVEVNHPFIVKL-----------HYAFQTEGKLYLILDFLRGGDLFTRLSKEV---MFTE 125
Query: 590 SERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
+ L +A A+ LH+ G +K NILL+E KL+D+GLS S D
Sbjct: 126 EDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESID 178
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 16 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 75
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 76 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 127
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 128 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 184
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 185 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 244
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 245 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 291
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 292 NFAIILERIEYCTQ 305
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 42 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 101
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 102 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 153
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 154 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 210
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 211 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 270
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 271 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 317
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 318 NFAIILERIEYCTQ 331
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 16 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 75
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 76 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 127
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 128 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 184
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 185 IGDFGMAQDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 244
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 245 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 291
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 292 NFAIILERIEYCTQ 305
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSSKKYTVR-----NXXXXXXX 532
K + F++ ++G+GS+GK++ + +G+ + + KK T++
Sbjct: 20 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDI 79
Query: 533 XXXXXHPHLVCLLGHCIDGGGRDDYAVN---KVFLVYEFMSNGNFRTHISENTPGKVLNW 589
HP +V L YA K++L+ +F+ G+ T +S+ +
Sbjct: 80 LVEVNHPFIVKL-----------HYAFQTEGKLYLILDFLRGGDLFTRLSKEV---MFTE 125
Query: 590 SERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
+ L +A A+ LH+ G +K NILL+E KL+D+GLS S D
Sbjct: 126 EDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESID 178
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSSKKYTVR-----NXXXXXXX 532
K + F++ ++G+GS+GK++ + +G+ + + KK T++
Sbjct: 21 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDI 80
Query: 533 XXXXXHPHLVCLLGHCIDGGGRDDYAVN---KVFLVYEFMSNGNFRTHISENTPGKVLNW 589
HP +V L YA K++L+ +F+ G+ T +S+ +
Sbjct: 81 LVEVNHPFIVKL-----------HYAFQTEGKLYLILDFLRGGDLFTRLSKEV---MFTE 126
Query: 590 SERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
+ L +A A+ LH+ G +K NILL+E KL+D+GLS S D
Sbjct: 127 EDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESID 179
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV 619
+++++V EF+ G T I +T +N + AV + V +A+ LH G + +
Sbjct: 221 DELWVVMEFLEGGAL-TDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDI 273
Query: 620 KTNNILLNEHRIAKLSDYGL-SIVSEDINSVGGKQEDPNSWEMTKL--------EDDVFS 670
K+++ILL KLSD+G + VS+++ P W +L E D++S
Sbjct: 274 KSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTP-YWMAPELISRLPYGPEVDIWS 332
Query: 671 FGFMLLESVAG 681
G M++E V G
Sbjct: 333 LGIMVIEMVDG 343
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSS-KK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 30 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSE 89
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 90 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 141
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 142 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 198
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 199 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 258
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 259 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 305
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 306 NFAIILERIEYCTQ 319
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG +G++ K + + +VA++ L +++K H +
Sbjct: 30 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 89
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 90 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 141
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 142 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLTARNVLVTENNVMKIADFGL---ARDIN 195
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 196 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 238
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G++ K + + +VA++ L +++K H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 103 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ + P W + + DV+SFG ++ E
Sbjct: 209 NIDYYKNTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
++ +GEG +G +++G EN +VAI+ + +VR
Sbjct: 10 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH+V L+G + N V+++ E + G R+ + +V +S LA LI
Sbjct: 70 HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLI 114
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
++ A+ +L + F + + N+L++ KL D+GLS ED
Sbjct: 115 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSATDCVKLGDFGLSRYMED 163
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 56 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 115
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 116 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 167
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 168 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 224
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 225 IGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 284
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 285 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 331
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 332 NFAIILERIEYCTQ 345
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 26/165 (15%)
Query: 485 FDMSAIMGEGSYGKLYKGRLENGTSV----AIRCLPSSKKYTVRNXXXXXXXXX------ 534
F++ ++G+G YGK+++ R G + A++ L K VRN
Sbjct: 19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVL--KKAMIVRNAKDTAHTKAERNILE 76
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
HP +V L+ GG K++L+ E++S G + +
Sbjct: 77 EVKHPFIVDLIYAFQTGG--------KLYLILEYLSGGELFMQLEREG---IFMEDTACF 125
Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
L ++ A+ LH G +K NI+LN KL+D+GL
Sbjct: 126 YLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGL 167
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 89/226 (39%), Gaps = 41/226 (18%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
+ + +G G++G++ + + +VA++ L ++
Sbjct: 29 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 88
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGK----- 585
HL V LLG C GG + ++ EF GN T++ +E P K
Sbjct: 89 IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKEAPED 141
Query: 586 ----VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
L + VAK ++FL + + + NILL+E + K+ D+GL+
Sbjct: 142 LYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLAR 198
Query: 642 -VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
+ +D + V G P W + ++ DV+SFG +L E
Sbjct: 199 DIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 244
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 26/165 (15%)
Query: 485 FDMSAIMGEGSYGKLYKGRLENGTSV----AIRCLPSSKKYTVRNXXXXXXXXX------ 534
F++ ++G+G YGK+++ R G + A++ L K VRN
Sbjct: 19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVL--KKAMIVRNAKDTAHTKAERNILE 76
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
HP +V L+ GG K++L+ E++S G + +
Sbjct: 77 EVKHPFIVDLIYAFQTGG--------KLYLILEYLSGGELFMQLEREG---IFMEDTACF 125
Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
L ++ A+ LH G +K NI+LN KL+D+GL
Sbjct: 126 YLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGL 167
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG +G++ K + + +VA++ L +++K H +
Sbjct: 35 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 94
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 95 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 146
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 147 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 200
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 201 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 243
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
A ++ ++ +LKE N + +G G++G++Y+G++ + VA++ LP +
Sbjct: 33 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 92
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
+ H ++V +G + R F++ E M+ G+ ++ + E
Sbjct: 93 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 144
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
P S + L+ VA+ + Q+L F + + N LL R+AK
Sbjct: 145 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 201
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
+ D+G++ I GG P W + + D +SFG +L E S+
Sbjct: 202 IGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 261
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
++ Q + E + S + + PV +C + RP
Sbjct: 262 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 308
Query: 742 SFEDILWNLQYAAQ 755
+F IL ++Y Q
Sbjct: 309 NFAIILERIEYCTQ 322
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/223 (17%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G++ K + + +VA++ L +++K H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 103 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + +++D+GL + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMRIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 209 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG +G++ K + + +VA++ L +++K H +
Sbjct: 32 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 91
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 92 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 143
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 144 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 197
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 198 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 240
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
E+ + NN +G G++GK+ + G+ + VA++ L S+ +
Sbjct: 24 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 83
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG---NFRTHISE---- 580
H ++V LLG C GG V ++ E+ G NF +E
Sbjct: 84 ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKAEAMLG 135
Query: 581 -------------NTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN 627
G+ L + L VA+ + FL + + V N+LL
Sbjct: 136 PSLAPGQDPEGLDKEDGRPLELRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLT 192
Query: 628 EHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
+AK+ D+GL+ I+++ V G P W + ++ DV+S+G +L E
Sbjct: 193 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 252
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G+ L K + T VA++ L S ++K H +
Sbjct: 77 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
++ LLG C G ++++ E+ S GN R ++ + P + L
Sbjct: 137 IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 188
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ VA+ +++L + + + N+L+ E + K++D+GL + DI+
Sbjct: 189 SSKDLVSCAYQVARGMEYLASKKC---IHRDLAARNVLVTEDNVMKIADFGL---ARDIH 242
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
+ ++ P W + + DV+SFG +L E
Sbjct: 243 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 285
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSL-KQGSMSPDAFLAEANLMKQLQHQRLVRL------ 79
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 80 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 131
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 132 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEXTAREGAKFPIKWTAPEA 187
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 188 INYGTFTIKSDVWSFGILLTEIVT 211
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 30 LGAGQFGEVWMGYYNGHTKVAVKSL-KQGSMSPDAFLAEANLMKQLQHQRLVRL------ 82
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 83 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 134
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 135 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEXTAREGAKFPIKWTAPEA 190
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 191 INYGTFTIKSDVWSFGILLTEIVT 214
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 27/195 (13%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCL-PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+G G +G+++ T VA++ + P S +V H LV L H +
Sbjct: 190 LGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKL--HAV 245
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHI-----SENTPGKVLNWSERLAVLIGVAKAVQ 604
++++ EFM+ G+ + S+ K++++S ++A + +
Sbjct: 246 -------VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN 298
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKL 664
++H ++ NIL++ + K++D+GL+ V E N T +
Sbjct: 299 YIH---------RDLRAANILVSASLVCKIADFGLARVGAKFPIKWTAPEAINFGSFT-I 348
Query: 665 EDDVFSFGFMLLESV 679
+ DV+SFG +L+E V
Sbjct: 349 KSDVWSFGILLMEIV 363
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 33/203 (16%)
Query: 462 LGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCL----- 515
+G P R TL A N + +G+G +G ++KGRL ++ + VAI+ L
Sbjct: 3 MGGSEFPKSRLPTL-----ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDS 57
Query: 516 --PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN 573
+ + HP++V L G N +V EF+ G+
Sbjct: 58 EGETEMIEKFQEFQREVFIMSNLNHPNIVKLYG----------LMHNPPRMVMEFVPCGD 107
Query: 574 FRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL-----NE 628
+ + + WS +L +++ +A ++++ P + +++ NI L N
Sbjct: 108 LYHRLLDK--AHPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENA 164
Query: 629 HRIAKLSDYGLSIVSEDINSVGG 651
AK++D+GLS + ++SV G
Sbjct: 165 PVCAKVADFGLS--QQSVHSVSG 185
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 31 LGAGQFGEVWMGYYNGHTKVAVKSL-KQGSMSPDAFLAEANLMKQLQHQRLVRL------ 83
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 84 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 135
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 136 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEYTAREGAKFPIKWTAPEA 191
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 192 INYGTFTIKSDVWSFGILLTEIVT 215
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 24/222 (10%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL--ENGT--SVAIRCLPSS--KKYTVRNXXX 528
LE++ F + ++G+G +G + + +L E+G+ VA++ L + +
Sbjct: 15 LEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLR 74
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK--- 585
HPH+ L+G + + + V L FM +G+ + + G+
Sbjct: 75 EAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVIL--PFMKHGDLHAFLLASRIGENPF 132
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVS 643
L + ++ +A +++L + F + + N +L E ++D+GLS I S
Sbjct: 133 NLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCVADFGLSRKIYS 189
Query: 644 EDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
D G + P W + + DV++FG + E
Sbjct: 190 GDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWE 231
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV 619
+++++V EF+ G T I +T +N + AV + V +A+ LH G + +
Sbjct: 99 DELWVVMEFLEGGAL-TDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDI 151
Query: 620 KTNNILLNEHRIAKLSDYGL-SIVSEDINSVGGKQEDPNSWEMTKL--------EDDVFS 670
K+++ILL KLSD+G + VS+++ P W +L E D++S
Sbjct: 152 KSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTP-YWMAPELISRLPYGPEVDIWS 210
Query: 671 FGFMLLESVAG 681
G M++E V G
Sbjct: 211 LGIMVIEMVDG 221
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSL-KQGSMSPDAFLAEANLMKQLQHQRLVRL------ 73
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 74 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 125
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 126 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEXTAREGAKFPIKWTAPEA 181
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 182 INYGTFTIKSDVWSFGILLTEIVT 205
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV 619
+++++V EF+ G T I +T +N + AV + V +A+ LH G + +
Sbjct: 144 DELWVVMEFLEGGAL-TDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDI 196
Query: 620 KTNNILLNEHRIAKLSDYGL-SIVSEDINSVGGKQEDPNSWEMTKL--------EDDVFS 670
K+++ILL KLSD+G + VS+++ P W +L E D++S
Sbjct: 197 KSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTP-YWMAPELISRLPYGPEVDIWS 255
Query: 671 FGFMLLESVAG 681
G M++E V G
Sbjct: 256 LGIMVIEMVDG 266
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 23 LGAGQFGEVWMGYYNGHTKVAVKSL-KQGSMSPDAFLAEANLMKQLQHQRLVRL------ 75
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 76 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 127
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 128 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEXTAREGAKFPIKWTAPEA 183
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 184 INYGTFTIKSDVWSFGILLTEIVT 207
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV 619
+++++V EF+ G T I +T +N + AV + V +A+ LH G + +
Sbjct: 101 DELWVVMEFLEGGAL-TDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDI 153
Query: 620 KTNNILLNEHRIAKLSDYGL-SIVSEDINSVGGKQEDPNSWEMTKL--------EDDVFS 670
K+++ILL KLSD+G + VS+++ P W +L E D++S
Sbjct: 154 KSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTP-YWMAPELISRLPYGPEVDIWS 212
Query: 671 FGFMLLESVAG 681
G M++E V G
Sbjct: 213 LGIMVIEMVDG 223
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 22 LGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRL------ 74
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 75 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 126
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 127 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEXTAREGAKFPIKWTAPEA 182
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 183 INYGTFTIKSDVWSFGILLTEIVT 206
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 17 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRL------ 69
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 70 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 121
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 122 EER---NYIHRNLRAANILVSDTLSCKIADFGLARLIED-NEYTAREGAKFPIKWTAPEA 177
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 178 INYGTFTIKSDVWSFGILLTEIVT 201
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 33/203 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRL------ 68
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 69 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 120
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 121 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEYTAREGAKFPIKWTAPEA 176
Query: 664 -------LEDDVFSFGFMLLESV 679
++ DV+SFG +L E V
Sbjct: 177 INYGTFTIKSDVWSFGILLTEIV 199
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRL------ 79
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 80 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 131
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 132 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEYTAREGAKFPIKWTAPEA 187
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 188 INYGTFTIKSDVWSFGILLTEIVT 211
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/207 (18%), Positives = 83/207 (40%), Gaps = 33/207 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 20 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 79
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
++ +V ++ + H+ + + + + A+ + +LH
Sbjct: 80 ---------PQLAIVTQWCEGSSLYHHLHASETK--FEMKKLIDIARQTARGMDYLHAKS 128
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV------SEDINSVGG----------KQE 654
I + +K+NNI L+E K+ D+GL+ V S + G + +
Sbjct: 129 I---IHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQ 185
Query: 655 DPNSWEMTKLEDDVFSFGFMLLESVAG 681
D N + + DV++FG +L E + G
Sbjct: 186 DSNPYS---FQSDVYAFGIVLYELMTG 209
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/223 (17%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G++ K + + +VA++ L ++++ H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ E+ S GN R ++ P + +
Sbjct: 103 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 209 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 26 LGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRL------ 78
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 79 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 130
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 131 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEYTAREGAKFPIKWTAPEA 186
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 187 INYGTFTIKSDVWSFGILLTEIVT 210
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV 619
+++++V EF+ G T I +T +N + AV + V +A+ LH G + +
Sbjct: 90 DELWVVMEFLEGGAL-TDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDI 142
Query: 620 KTNNILLNEHRIAKLSDYGL-SIVSEDINSVGGKQEDPNSWEMTKL--------EDDVFS 670
K+++ILL KLSD+G + VS+++ P W +L E D++S
Sbjct: 143 KSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTP-YWMAPELISRLPYGPEVDIWS 201
Query: 671 FGFMLLESVAG 681
G M++E V G
Sbjct: 202 LGIMVIEMVDG 212
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV 619
+++++V EF+ G T I +T +N + AV + V +A+ LH G + +
Sbjct: 94 DELWVVMEFLEGGAL-TDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDI 146
Query: 620 KTNNILLNEHRIAKLSDYGL-SIVSEDINSVGGKQEDPNSWEMTKL--------EDDVFS 670
K+++ILL KLSD+G + VS+++ P W +L E D++S
Sbjct: 147 KSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTP-YWMAPELISRLPYGPEVDIWS 205
Query: 671 FGFMLLESVAG 681
G M++E V G
Sbjct: 206 LGIMVIEMVDG 216
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRL------ 73
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 74 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 125
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 126 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEYTAREGAKFPIKWTAPEA 181
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 182 INYGTFTIKSDVWSFGILLTEIVT 205
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 41/211 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-- 73
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFL 606
++ +V ++ + H+ ++ + LI +A+ + +L
Sbjct: 74 -------TAPQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYL 120
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV------SEDINSVGG--------- 651
H I + +K+NNI L+E K+ D+GL+ V S + G
Sbjct: 121 HAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV 177
Query: 652 -KQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
+ +D N + + DV++FG +L E + G
Sbjct: 178 IRMQDKNPYS---FQSDVYAFGIVLYELMTG 205
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G +G+++ G T VA++ L + H LV L
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRL------ 73
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 74 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 125
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK- 663
+ + ++ NIL+++ K++D+GL+ + ED N ++ + P W +
Sbjct: 126 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED-NEXTAREGAKFPIKWTAPEA 181
Query: 664 -------LEDDVFSFGFMLLESVA 680
++ DV+SFG +L E V
Sbjct: 182 INYGTFTIKSDVWSFGILLTEIVT 205
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 17/166 (10%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+N + ++G G YG +YKG L+ VA++ + + N
Sbjct: 13 DNLKLLELIGRGRYGAVYKGSLDE-RPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIAR 71
Query: 543 CLLG-HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
++G + GR +Y LV E+ NG+ ++S +T +W + V +
Sbjct: 72 FIVGDERVTADGRMEY-----LLVMEYYPNGSLXKYLSLHTS----DWVSSCRLAHSVTR 122
Query: 602 AVQFLHTGV------IPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+ +LHT + P + + + N+L+ +SD+GLS+
Sbjct: 123 GLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSM 168
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 30/204 (14%)
Query: 491 MGEGSYGK--LYKGRLEN---GTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVCL 544
+GEG +GK LY N G VA++ L + R+ H H++
Sbjct: 39 LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKY 98
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
G C D G + LV E++ G+ R ++ ++ G ++ L + + +
Sbjct: 99 KGCCEDAGA------ASLQLVMEYVPLGSLRDYLPRHSIG----LAQLLLFAQQICEGMA 148
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS---WEM 661
+LH + + + N+LL+ R+ K+ D+GL+ + + +ED +S W
Sbjct: 149 YLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVREDGDSPVFWYA 205
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ DV+SFG L E
Sbjct: 206 PECLKEYKFYYASDVWSFGVTLYE 229
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 26/171 (15%)
Query: 479 KEATNNFDMSAIMGEGSYGKLY----KGRLENGTSVAIRCLPSSKKYTVR-----NXXXX 529
K ++F++ ++G+GS+GK++ R ++G A++ L KK T++
Sbjct: 24 KADPSHFELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVL---KKATLKVRDRVRTKME 80
Query: 530 XXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNW 589
HP V L + G K++L+ +F+ G+ T +S+ +
Sbjct: 81 RDILADVNHP-FVVKLHYAFQTEG-------KLYLILDFLRGGDLFTRLSKEV---MFTE 129
Query: 590 SERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ L +A + LH+ G +K NILL+E KL+D+GLS
Sbjct: 130 EDVKFYLAELALGLDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLS 177
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 86/206 (41%), Gaps = 31/206 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 32 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-- 89
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
++ +V ++ + H+ + + + + A+ + +LH
Sbjct: 90 -------TAPQLAIVTQWCEGSSLYHHLHASETK--FEMKKLIDIARQTARGMDYLHAKS 140
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS----W---EMTK 663
I + +K+NNI L+E K+ D+GL+ +E G Q + S W E+ +
Sbjct: 141 I---IHRDLKSNNIFLHEDNTVKIGDFGLA--TEKSRWSGSHQFEQLSGSILWMAPEVIR 195
Query: 664 LED--------DVFSFGFMLLESVAG 681
++D DV++FG +L E + G
Sbjct: 196 MQDSNPYSFQSDVYAFGIVLYELMTG 221
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+ G +G ++K +L N VA++ P K + +N H +++ +G
Sbjct: 31 VKARGRFGCVWKAQLLN-EYVAVKIFPIQDKQSWQNEYEVYSLPGMK-HENILQFIGAEK 88
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT- 608
G D ++L+ F G+ + N V++W+E + +A+ + +LH
Sbjct: 89 RGTSVD----VDLWLITAFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHED 140
Query: 609 ------GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVG 650
G P + +K+ N+LL + A ++D+GL++ E S G
Sbjct: 141 IPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAG 188
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 31/202 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G G G+++ G T VA++ L + H LV L
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSL-KQGSMSPDAFLAEANLMKQLQHQRLVRL------ 73
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFL 606
YAV ++++ E+M NG+ + TP G L ++ L + +A+ + F+
Sbjct: 74 ------YAVVTQEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFI 125
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQED-PNSWEMTK-- 663
+ + ++ NIL+++ K++D+GL+ + ED + P W +
Sbjct: 126 EER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIKWTAPEAI 182
Query: 664 ------LEDDVFSFGFMLLESV 679
++ DV+SFG +L E V
Sbjct: 183 NYGTFTIKSDVWSFGILLTEIV 204
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 92/216 (42%), Gaps = 31/216 (14%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVR-----NXXXXXXX 532
K + +F + +G GS+G+++ R NG A++ L K+ VR +
Sbjct: 2 KYSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVL--KKEIVVRLKQVEHTNDERLM 59
Query: 533 XXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI--SENTPGKVLNWS 590
HP ++ + G D ++F++ +++ G + + S+ P V +
Sbjct: 60 LSIVTHPFIIRMWGTFQDA--------QQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFY 111
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVG 650
L A+++LH+ I +K NILL+++ K++D+G + D+
Sbjct: 112 AAEVCL-----ALEYLHSKDI---IYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYXL 163
Query: 651 GKQEDPNSWEMTKLED-----DVFSFGFMLLESVAG 681
D + E+ + D +SFG ++ E +AG
Sbjct: 164 CGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAG 199
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 41/211 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 75
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFL 606
++ +V ++ + H+ ++ + LI +A+ + +L
Sbjct: 76 ---------PQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYL 120
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV------SEDINSVGG--------- 651
H I + +K+NNI L+E K+ D+GL+ V S + G
Sbjct: 121 HAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV 177
Query: 652 -KQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
+ +D N + + DV++FG +L E + G
Sbjct: 178 IRMQDKNPYS---FQSDVYAFGIVLYELMTG 205
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 25/206 (12%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
++ ++G G++G + K + VAI+ + S + + HP++V
Sbjct: 9 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESESER--KAFIVELRQLSRVNHPNIV 65
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
L G C+ N V LV E+ G+ + P + ++ + ++
Sbjct: 66 KLYGACL----------NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQG 115
Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEM 661
V +LH+ + +K N+LL + K+ D+G + DI + + +W
Sbjct: 116 VAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC---DIQTHMTNNKGSAAWMA 172
Query: 662 TKLED--------DVFSFGFMLLESV 679
++ + DVFS+G +L E +
Sbjct: 173 PEVFEGSNYSEKCDVFSWGIILWEVI 198
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 41/211 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 21 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 80
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFL 606
++ +V ++ + H+ ++ + LI +A+ + +L
Sbjct: 81 ---------PQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYL 125
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV------SEDINSVGG--------- 651
H I + +K+NNI L+E K+ D+GL+ V S + G
Sbjct: 126 HAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV 182
Query: 652 -KQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
+ +D N + + DV++FG +L E + G
Sbjct: 183 IRMQDKNPYS---FQSDVYAFGIVLYELMTG 210
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/223 (17%), Positives = 94/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G++ K + + +VA++ L +++K H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ + S GN R ++ P + +
Sbjct: 103 IINLLGACTQDG--------PLYVIVAYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 209 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYT---VRNXXXXXXXXXXXXHP 539
++ + +G G++GK+ G + G VA++ L K + V HP
Sbjct: 12 HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHP 71
Query: 540 HLVCLLGHCIDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
H++ L Y V F+V E++S G +I ++ G+V R +
Sbjct: 72 HIIKL------------YQVISTPTDFFMVMEYVSGGELFDYICKH--GRVEEMEAR-RL 116
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
+ AV + H ++ + +K N+LL+ H AK++D+GLS + D
Sbjct: 117 FQQILSAVDYCHRHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSD 163
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 25/206 (12%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
++ ++G G++G + K + VAI+ + S + + HP++V
Sbjct: 8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESESER--KAFIVELRQLSRVNHPNIV 64
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
L G C+ N V LV E+ G+ + P + ++ + ++
Sbjct: 65 KLYGACL----------NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQG 114
Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEM 661
V +LH+ + +K N+LL + K+ D+G + DI + + +W
Sbjct: 115 VAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC---DIQTHMTNNKGSAAWMA 171
Query: 662 TKLED--------DVFSFGFMLLESV 679
++ + DVFS+G +L E +
Sbjct: 172 PEVFEGSNYSEKCDVFSWGIILWEVI 197
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 41/211 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 18 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 77
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFL 606
++ +V ++ + H+ ++ + LI +A+ + +L
Sbjct: 78 ---------PQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYL 122
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV------SEDINSVGG--------- 651
H I + +K+NNI L+E K+ D+GL+ V S + G
Sbjct: 123 HAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV 179
Query: 652 -KQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
+ +D N + + DV++FG +L E + G
Sbjct: 180 IRMQDKNPYS---FQSDVYAFGIVLYELMTG 207
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 27/168 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK------KYTVRNXXXXXXXXXX 535
N+F + I+G G +G++Y R + G A++CL + + N
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 248
Query: 536 XXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
P +VC+ YA +K+ + + M+ G+ H+S++ V + ++
Sbjct: 249 GDCPFIVCM-----------SYAFHTPDKLSFILDLMNGGDLHYHLSQHG---VFSEADM 294
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ ++ +H + +K NILL+EH ++SD GL+
Sbjct: 295 RFYAAEIILGLEHMHNRFV---VYRDLKPANILLDEHGHVRISDLGLA 339
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 41/211 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 21 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 80
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFL 606
++ +V ++ + H+ ++ + LI +A+ + +L
Sbjct: 81 ---------PQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYL 125
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV------SEDINSVGG--------- 651
H I + +K+NNI L+E K+ D+GL+ V S + G
Sbjct: 126 HAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV 182
Query: 652 -KQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
+ +D N + + DV++FG +L E + G
Sbjct: 183 IRMQDKNPYS---FQSDVYAFGIVLYELMTG 210
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYT---VRNXXXXXXXXXXXXHP 539
++ + +G G++GK+ G + G VA++ L K + V HP
Sbjct: 12 HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHP 71
Query: 540 HLVCLLGHCIDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
H++ L Y V F+V E++S G +I ++ G+V R +
Sbjct: 72 HIIKL------------YQVISTPTDFFMVMEYVSGGELFDYICKH--GRVEEMEAR-RL 116
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
+ AV + H ++ + +K N+LL+ H AK++D+GLS + D
Sbjct: 117 FQQILSAVDYCHRHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSD 163
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 27/168 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK------KYTVRNXXXXXXXXXX 535
N+F + I+G G +G++Y R + G A++CL + + N
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 248
Query: 536 XXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
P +VC+ YA +K+ + + M+ G+ H+S++ V + ++
Sbjct: 249 GDCPFIVCM-----------SYAFHTPDKLSFILDLMNGGDLHYHLSQHG---VFSEADM 294
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ ++ +H + +K NILL+EH ++SD GL+
Sbjct: 295 RFYAAEIILGLEHMHNRFV---VYRDLKPANILLDEHGHVRISDLGLA 339
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 27/168 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK------KYTVRNXXXXXXXXXX 535
N+F + I+G G +G++Y R + G A++CL + + N
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 248
Query: 536 XXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
P +VC+ YA +K+ + + M+ G+ H+S++ V + ++
Sbjct: 249 GDCPFIVCM-----------SYAFHTPDKLSFILDLMNGGDLHYHLSQHG---VFSEADM 294
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ ++ +H + +K NILL+EH ++SD GL+
Sbjct: 295 RFYAAEIILGLEHMHNRFV---VYRDLKPANILLDEHGHVRISDLGLA 339
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 27/168 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK------KYTVRNXXXXXXXXXX 535
N+F + I+G G +G++Y R + G A++CL + + N
Sbjct: 188 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 247
Query: 536 XXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
P +VC+ YA +K+ + + M+ G+ H+S++ V + ++
Sbjct: 248 GDCPFIVCM-----------SYAFHTPDKLSFILDLMNGGDLHYHLSQHG---VFSEADM 293
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ ++ +H + +K NILL+EH ++SD GL+
Sbjct: 294 RFYAAEIILGLEHMHNRFV---VYRDLKPANILLDEHGHVRISDLGLA 338
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 86/206 (41%), Gaps = 31/206 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 32 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 91
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
++ +V ++ + H+ + + + + A+ + +LH
Sbjct: 92 ---------PQLAIVTQWCEGSSLYHHLHASETK--FEMKKLIDIARQTARGMDYLHAKS 140
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS----W---EMTK 663
I + +K+NNI L+E K+ D+GL+ +E G Q + S W E+ +
Sbjct: 141 I---IHRDLKSNNIFLHEDNTVKIGDFGLA--TEKSRWSGSHQFEQLSGSILWMAPEVIR 195
Query: 664 LED--------DVFSFGFMLLESVAG 681
++D DV++FG +L E + G
Sbjct: 196 MQDSNPYSFQSDVYAFGIVLYELMTG 221
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 41/211 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 43 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 102
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFL 606
++ +V ++ + H+ ++ + LI +A+ + +L
Sbjct: 103 ---------PQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYL 147
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV------SEDINSVGG--------- 651
H I + +K+NNI L+E K+ D+GL+ V S + G
Sbjct: 148 HAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV 204
Query: 652 -KQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
+ +D N + + DV++FG +L E + G
Sbjct: 205 IRMQDKNPYS---FQSDVYAFGIVLYELMTG 232
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 41/211 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 103
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFL 606
++ +V ++ + H+ ++ + LI +A+ + +L
Sbjct: 104 ---------PQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYL 148
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV------SEDINSVGG--------- 651
H I + +K+NNI L+E K+ D+GL+ V S + G
Sbjct: 149 HAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV 205
Query: 652 -KQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
+ +D N + + DV++FG +L E + G
Sbjct: 206 IRMQDKNPYS---FQSDVYAFGIVLYELMTG 233
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 25/214 (11%)
Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKY---TVRNXXXXXXXXXX 535
E +F + ++G+GS+ +Y+ + G VAI+ + Y V+
Sbjct: 8 EKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQ 67
Query: 536 XXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
HP ++ L + D N V+LV E NG ++ K + +E
Sbjct: 68 LKHPSILELYNYFEDS--------NYVYLVLEMCHNGEMNRYLKNRV--KPFSENEARHF 117
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS----IVSEDINSVGG 651
+ + + +LH+ G + + +N+LL + K++D+GL+ + E ++ G
Sbjct: 118 MHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCG 174
Query: 652 KQEDPNSWEMTK----LEDDVFSFGFMLLESVAG 681
+ T+ LE DV+S G M + G
Sbjct: 175 TPNYISPEIATRSAHGLESDVWSLGCMFYTLLIG 208
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 120/320 (37%), Gaps = 70/320 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
N +G G++GK+ + + + +VA++ L S T R
Sbjct: 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82
Query: 537 X--HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI---------SENTPGK 585
H ++V LLG C GG ++ E+ G+ + S+ +P
Sbjct: 83 LGNHMNIVNLLGACTIGG--------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 134
Query: 586 VLNWSERLAVLIG------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
+ + L + VAK + FL + + + NILL RI K+ D+GL
Sbjct: 135 MEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGL 191
Query: 640 S--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLESVA-------GP 682
+ I ++ V G P W + E DV+S+G L E + G
Sbjct: 192 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 251
Query: 683 SVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPS 742
V ++ + ++E L+ + + D +M T C ++ RP+
Sbjct: 252 PVDSKFYKMIKEGFRMLSPEHAPAEMYD--IMKT---------------CWDADPLKRPT 294
Query: 743 FEDILWNLQYAAQVQETADN 762
F+ I+ ++ Q+ E+ ++
Sbjct: 295 FKQIVQLIE--KQISESTNH 312
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 480 EATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXX 536
E NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 7 EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL 66
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 67 NHPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYL 116
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 117 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 157
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 37/230 (16%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVR 524
F +E + + + +G+GS+G +Y+G + E T VA++ + +S + +
Sbjct: 7 FVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIE 66
Query: 525 NXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------ 578
H H+V LLG G +V E M++G+ ++++
Sbjct: 67 FLNEASVMKGFTCH-HVVRLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPE 117
Query: 579 SENTPGK-VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
+EN PG+ E + + +A + +L+ F + + N ++ K+ D+
Sbjct: 118 AENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 174
Query: 638 GLS--IVSEDINSVGGKQEDPNSWEMTK-LEDDVF-------SFGFMLLE 677
G++ I GGK P W + L+D VF SFG +L E
Sbjct: 175 GMTRDIYETAYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 224
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 480 EATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXX 536
E NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 7 EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL 66
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 67 NHPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYL 116
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 117 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 157
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 47/239 (19%)
Query: 475 LEELKEATN--------------NFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSSK 519
+EE KEA N +FD+ ++G GSY K+ RL+ + A+R + K
Sbjct: 30 IEEEKEAMNTRESGKASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVV---K 86
Query: 520 KYTVRN-------XXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG 572
K V + HP LV L C R +F V E+++ G
Sbjct: 87 KELVNDDEDIDWVQTEKHVFEQASNHPFLVGL-HSCFQTESR-------LFFVIEYVNGG 138
Query: 573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA 632
+ H+ + L ++ A+ +LH G +K +N+LL+
Sbjct: 139 DLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHI 192
Query: 633 KLSDYGL---SIVSEDINSVGGKQEDPNSWEMTKLED-----DVFSFGFMLLESVAGPS 683
KL+DYG+ + D S + + E+ + ED D ++ G ++ E +AG S
Sbjct: 193 KLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS 251
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 30/204 (14%)
Query: 491 MGEGSYGK--LYKGRLEN---GTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVCL 544
+GEG +GK LY N G VA++ L + R+ H H++
Sbjct: 22 LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKY 81
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
G C D G + + LV E++ G+ R ++ ++ G ++ L + + +
Sbjct: 82 KGCCEDQGEKS------LQLVMEYVPLGSLRDYLPRHSIG----LAQLLLFAQQICEGMA 131
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS---WEM 661
+LH+ + + + N+LL+ R+ K+ D+GL+ + + +ED +S W
Sbjct: 132 YLHSQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA 188
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ DV+SFG L E
Sbjct: 189 PECLKEYKFYYASDVWSFGVTLYE 212
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 119/320 (37%), Gaps = 70/320 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
N +G G++GK+ + + + +VA++ L S T R
Sbjct: 46 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 105
Query: 537 X--HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI---------SENTPGK 585
H ++V LLG C GG ++ E+ G+ + S+ +P
Sbjct: 106 LGNHMNIVNLLGACTIGG--------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 157
Query: 586 VLNWSERLAVLIG------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
+ + L + VAK + FL + + + NILL RI K+ D+GL
Sbjct: 158 MEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGL 214
Query: 640 S--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE-------SVAGP 682
+ I ++ V G P W + E DV+S+G L E G
Sbjct: 215 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 274
Query: 683 SVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPS 742
V ++ + ++E L+ + + D +M T C ++ RP+
Sbjct: 275 PVDSKFYKMIKEGFRMLSPEHAPAEMYD--IMKT---------------CWDADPLKRPT 317
Query: 743 FEDILWNLQYAAQVQETADN 762
F+ I+ ++ Q+ E+ ++
Sbjct: 318 FKQIVQLIE--KQISESTNH 335
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 120/320 (37%), Gaps = 70/320 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
N +G G++GK+ + + + +VA++ L S T R
Sbjct: 41 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 100
Query: 537 X--HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI---------SENTPGK 585
H ++V LLG C GG ++ E+ G+ + S+ +P
Sbjct: 101 LGNHMNIVNLLGACTIGG--------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 152
Query: 586 VLNWSERLAVLIG------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
+ + L + VAK + FL + + + NILL RI K+ D+GL
Sbjct: 153 MEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGL 209
Query: 640 S--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLESVA-------GP 682
+ I ++ V G P W + E DV+S+G L E + G
Sbjct: 210 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 269
Query: 683 SVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPS 742
V ++ + ++E L+ + + D +M T C ++ RP+
Sbjct: 270 PVDSKFYKMIKEGFRMLSPEHAPAEMYD--IMKT---------------CWDADPLKRPT 312
Query: 743 FEDILWNLQYAAQVQETADN 762
F+ I+ ++ Q+ E+ ++
Sbjct: 313 FKQIVQLIE--KQISESTNH 330
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+S + + G L + + L
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIK--SYLF 113
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 114 QLLQGLAFCHSHRV---LHRDLKPENLLINTEGAIKLADFGLA 153
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 119/320 (37%), Gaps = 70/320 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
N +G G++GK+ + + + +VA++ L S T R
Sbjct: 46 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 105
Query: 537 X--HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI---------SENTPGK 585
H ++V LLG C GG ++ E+ G+ + S+ +P
Sbjct: 106 LGNHMNIVNLLGACTIGG--------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 157
Query: 586 VLNWSERLAVLIG------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
+ + L + VAK + FL + + + NILL RI K+ D+GL
Sbjct: 158 MEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGL 214
Query: 640 S--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE-------SVAGP 682
+ I ++ V G P W + E DV+S+G L E G
Sbjct: 215 ARHIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 274
Query: 683 SVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPS 742
V ++ + ++E L+ + + D +M T C ++ RP+
Sbjct: 275 PVDSKFYKMIKEGFRMLSPEHAPAEMYD--IMKT---------------CWDADPLKRPT 317
Query: 743 FEDILWNLQYAAQVQETADN 762
F+ I+ ++ Q+ E+ ++
Sbjct: 318 FKQIVQLIE--KQISESTNH 335
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 88/210 (41%), Gaps = 39/210 (18%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 75
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFL 606
++ +V ++ + H+ ++ + LI +A+ + +L
Sbjct: 76 ---------PQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYL 120
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS----W--- 659
H I + +K+NNI L+E K+ D+GL+ +E G Q + S W
Sbjct: 121 HAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLA--TEKSRWSGSHQFEQLSGSILWMAP 175
Query: 660 EMTKLED--------DVFSFGFMLLESVAG 681
E+ +++D DV++FG +L E + G
Sbjct: 176 EVIRMQDKNPYSFQSDVYAFGIVLYELMTG 205
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+S + + G L + + L
Sbjct: 62 HPNIVKLLDVI--------HTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIK--SYLF 111
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 112 QLLQGLAFCHSHRV---LHRDLKPENLLINTEGAIKLADFGLA 151
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 120/320 (37%), Gaps = 70/320 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
N +G G++GK+ + + + +VA++ L S T R
Sbjct: 39 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 98
Query: 537 X--HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI---------SENTPGK 585
H ++V LLG C GG ++ E+ G+ + S+ +P
Sbjct: 99 LGNHMNIVNLLGACTIGG--------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 150
Query: 586 VLNWSERLAVLIG------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
+ + L + VAK + FL + + + NILL RI K+ D+GL
Sbjct: 151 MEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGL 207
Query: 640 S--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLESVA-------GP 682
+ I ++ V G P W + E DV+S+G L E + G
Sbjct: 208 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 267
Query: 683 SVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPS 742
V ++ + ++E L+ + + D +M T C ++ RP+
Sbjct: 268 PVDSKFYKMIKEGFRMLSPEHAPAEMYD--IMKT---------------CWDADPLKRPT 310
Query: 743 FEDILWNLQYAAQVQETADN 762
F+ I+ ++ Q+ E+ ++
Sbjct: 311 FKQIVQLIE--KQISESTNH 328
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/223 (17%), Positives = 94/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
+GEG++G++ K + + +VA++ L +++K H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
++ LLG C G ++++ + S GN R ++ P + +
Sbjct: 103 IINLLGACTQDG--------PLYVIVGYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
+ + ++ +A+ +++L + + + N+L+ E+ + K++D+GL + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ P W + + DV+SFG ++ E
Sbjct: 209 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 462 LGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCL----- 515
+G P R TL A N + +G+G +G ++KGRL ++ + VAI+ L
Sbjct: 3 MGGSEFPKSRLPTL-----ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDS 57
Query: 516 --PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN 573
+ + HP++V L G N +V EF+ G+
Sbjct: 58 EGETEMIEKFQEFQREVFIMSNLNHPNIVKLYG----------LMHNPPRMVMEFVPCGD 107
Query: 574 FRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL-----NE 628
+ + + WS +L +++ +A ++++ P + +++ NI L N
Sbjct: 108 LYHRLLDK--AHPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENA 164
Query: 629 HRIAKLSDYGLSIVSEDINSVGG 651
AK++D+G S + ++SV G
Sbjct: 165 PVCAKVADFGTS--QQSVHSVSG 185
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 33/176 (18%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSS-----KKYTVRNXXXX 529
K NF++ ++G G+YGK++ R + G A++ L + K T
Sbjct: 50 KVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTER 109
Query: 530 XXXXXXXXHPHLVCLLGHCIDGGGRDDYAVN---KVFLVYEFMSNGNFRTHISENTPGKV 586
P LV L YA K+ L+ ++++ G TH+S+
Sbjct: 110 QVLEHIRQSPFLVTL-----------HYAFQTETKLHLILDYINGGELFTHLSQRE---- 154
Query: 587 LNWSER-LAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
++E + + +G + A++ LH G +K NILL+ + L+D+GLS
Sbjct: 155 -RFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLS 206
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 30/204 (14%)
Query: 491 MGEGSYGK--LYKGRLEN---GTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVCL 544
+GEG +GK LY N G VA++ L + R+ H H++
Sbjct: 22 LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKY 81
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
G C D G + + LV E++ G+ R ++ ++ G ++ L + + +
Sbjct: 82 KGCCEDQGEKS------LQLVMEYVPLGSLRDYLPRHSIG----LAQLLLFAQQICEGMA 131
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS---WEM 661
+LH + + + N+LL+ R+ K+ D+GL+ + + +ED +S W
Sbjct: 132 YLHAQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA 188
Query: 662 TK--------LEDDVFSFGFMLLE 677
+ DV+SFG L E
Sbjct: 189 PECLKEYKFYYASDVWSFGVTLYE 212
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 18/167 (10%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCL-PSSKKYTVRNXXXXXXXX 533
++ E +++ +G G + K+ + G VAI+ + ++ +
Sbjct: 3 KDYDELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEAL 62
Query: 534 XXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN-FRTHISENTPGKVLNWSER 592
H H +C L H ++ NK+F+V E+ G F IS++ L+ E
Sbjct: 63 KNLRHQH-ICQLYHVLE-------TANKIFMVLEYCPGGELFDYIISQDR----LSEEET 110
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
V + AV ++H+ G+ + +K N+L +E+ KL D+GL
Sbjct: 111 RVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGL 154
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 88/210 (41%), Gaps = 39/210 (18%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 103
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFL 606
++ +V ++ + H+ ++ + LI +A+ + +L
Sbjct: 104 ---------PQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYL 148
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS----W--- 659
H I + +K+NNI L+E K+ D+GL+ +E G Q + S W
Sbjct: 149 HAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLA--TEKSRWSGSHQFEQLSGSILWMAP 203
Query: 660 EMTKLED--------DVFSFGFMLLESVAG 681
E+ +++D DV++FG +L E + G
Sbjct: 204 EVIRMQDKNPYSFQSDVYAFGIVLYELMTG 233
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 88/210 (41%), Gaps = 39/210 (18%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G GS+G +YKG+ +V + + + ++ H +++ +G+
Sbjct: 36 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 95
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFL 606
++ +V ++ + H+ ++ + LI +A+ + +L
Sbjct: 96 ---------PQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYL 140
Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS----W--- 659
H I + +K+NNI L+E K+ D+GL+ +E G Q + S W
Sbjct: 141 HAKSI---IHRDLKSNNIFLHEDLTVKIGDFGLA--TEKSRWSGSHQFEQLSGSILWMAP 195
Query: 660 EMTKLED--------DVFSFGFMLLESVAG 681
E+ +++D DV++FG +L E + G
Sbjct: 196 EVIRMQDKNPYSFQSDVYAFGIVLYELMTG 225
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 462 LGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCL----- 515
+G P R TL A N + +G+G +G ++KGRL ++ + VAI+ L
Sbjct: 3 MGGSEFPKSRLPTL-----ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDS 57
Query: 516 --PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN 573
+ + HP++V L G N +V EF+ G+
Sbjct: 58 EGETEMIEKFQEFQREVFIMSNLNHPNIVKLYG----------LMHNPPRMVMEFVPCGD 107
Query: 574 FRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL-----NE 628
+ + + WS +L +++ +A ++++ P + +++ NI L N
Sbjct: 108 LYHRLLDK--AHPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENA 164
Query: 629 HRIAKLSDYGLSIVSEDINSVGG 651
AK++D+ LS + ++SV G
Sbjct: 165 PVCAKVADFSLS--QQSVHSVSG 185
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 61 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 110
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 111 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 24/206 (11%)
Query: 485 FDMSAIMGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVC 543
D +GEGS G + R ++ G VA++ + K+ H ++V
Sbjct: 47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVE 106
Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
+ + G +++++ EF+ G +S+ LN + V V +A+
Sbjct: 107 MYKSYLVG--------EELWVLMEFLQGGALTDIVSQVR----LNEEQIATVCEAVLQAL 154
Query: 604 QFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL-SIVSEDINSVGGKQEDPN----- 657
+LH G + +K+++ILL KLSD+G + +S+D+ P
Sbjct: 155 AYLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPE 211
Query: 658 --SWEMTKLEDDVFSFGFMLLESVAG 681
S + E D++S G M++E V G
Sbjct: 212 VISRSLYATEVDIWSLGIMVIEMVDG 237
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIR--CLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHC 548
+GEG+YG +YK + G VA++ L + + HP++V L+
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI 88
Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
++ + LV+EFM + + + EN G L S+ L + + V H
Sbjct: 89 --------HSERCLTLVFEFMEK-DLKKVLDENKTG--LQDSQIKIYLYQLLRGVAHCHQ 137
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
I + +K N+L+N KL+D+GL+
Sbjct: 138 HRI---LHRDLKPQNLLINSDGALKLADFGLA 166
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 86/201 (42%), Gaps = 26/201 (12%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+G+G+ G +Y + G VAIR + ++ +P++V L
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYL---- 83
Query: 550 DGGGRDDYAV-NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
D Y V +++++V E+++ G+ ++E ++ + AV +A++FLH+
Sbjct: 84 -----DSYLVGDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHS 134
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKL---- 664
+ + +K++NILL KL+D+G S + W ++
Sbjct: 135 NQV---IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRK 191
Query: 665 ----EDDVFSFGFMLLESVAG 681
+ D++S G M +E + G
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEG 212
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 113
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 114 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 153
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 113
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 114 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 153
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 63 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 112
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 113 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 152
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 62 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 111
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 112 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 151
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIR--CLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHC 548
+GEG+YG +YK + G VA++ L + + HP++V L+
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI 88
Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
++ + LV+EFM + + + EN G L S+ L + + V H
Sbjct: 89 --------HSERCLTLVFEFMEK-DLKKVLDENKTG--LQDSQIKIYLYQLLRGVAHCHQ 137
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
I + +K N+L+N KL+D+GL+
Sbjct: 138 HRI---LHRDLKPQNLLINSDGALKLADFGLA 166
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 62 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 111
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 112 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 151
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 457 SEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGE---GSYGKLYKGR-LENGTSVAI 512
S LG+E L E + N D I+GE G++GK+YK + E A
Sbjct: 8 SSGVDLGTENLYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAA 67
Query: 513 RCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG 572
+ + + + + + HP++V LL Y N ++++ EF + G
Sbjct: 68 KVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF--------YYENNLWILIEFCAGG 119
Query: 573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA 632
+ E + L S+ V A+ +LH I + +K NIL
Sbjct: 120 AVDAVMLELE--RPLTESQIQVVCKQTLDALNYLHDNKI---IHRDLKAGNILFTLDGDI 174
Query: 633 KLSDYGLS 640
KL+D+G+S
Sbjct: 175 KLADFGVS 182
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 5 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 64
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 65 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 114
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 115 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 154
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 61 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 110
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 111 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 63 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 112
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 113 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 152
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 457 SEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGE---GSYGKLYKGR-LENGTSVAI 512
S LG+E L E + N D I+GE G++GK+YK + E A
Sbjct: 8 SSGVDLGTENLYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAA 67
Query: 513 RCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG 572
+ + + + + + HP++V LL Y N ++++ EF + G
Sbjct: 68 KVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF--------YYENNLWILIEFCAGG 119
Query: 573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA 632
+ E + L S+ V A+ +LH I + +K NIL
Sbjct: 120 AVDAVMLELE--RPLTESQIQVVCKQTLDALNYLHDNKI---IHRDLKAGNILFTLDGDI 174
Query: 633 KLSDYGLS 640
KL+D+G+S
Sbjct: 175 KLADFGVS 182
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 61 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 110
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 111 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 61 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 110
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 111 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 457 SEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGE---GSYGKLYKGR-LENGTSVAI 512
S LG+E L E + N D I+GE G++GK+YK + E A
Sbjct: 8 SSGVDLGTENLYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAA 67
Query: 513 RCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG 572
+ + + + + + HP++V LL Y N ++++ EF + G
Sbjct: 68 KVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF--------YYENNLWILIEFCAGG 119
Query: 573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA 632
+ E + L S+ V A+ +LH I + +K NIL
Sbjct: 120 AVDAVMLELE--RPLTESQIQVVCKQTLDALNYLHDNKI---IHRDLKAGNILFTLDGDI 174
Query: 633 KLSDYGLS 640
KL+D+G+S
Sbjct: 175 KLADFGVS 182
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 7 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 67 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 116
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 117 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 154
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 63 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 112
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 113 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 63 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 112
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 113 LQGLSFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 63 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 112
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 113 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 111
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 112 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 63 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 112
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 113 QLLQGLAFCHSHRV---LHRDLKPENLLINTEGAIKLADFGLA 152
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 111
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 112 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 21/167 (12%)
Query: 484 NFDMSAIMGEGSYGKLYKG--RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
+F ++G G +G+++K R++ T V R KY H ++
Sbjct: 12 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRV-----KYNNEKAEREVKALAKLDHVNI 66
Query: 542 VCLLGHCIDGGGRDDYAVNK---------VFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
V G C DG D +K +F+ EF G I E G+ L+
Sbjct: 67 VHYNG-CWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWI-EKRRGEKLDKVLA 124
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
L + + K V ++H+ N +K +NI L + + K+ D+GL
Sbjct: 125 LELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGL 168
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 24/167 (14%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT----PGKVLNWSERL 593
HP++V LL + NK++LV+EF+ + +T + + P ++
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEFLHQ-DLKTFMDASALTGIPLPLIK----- 109
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ L + + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 110 SYLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 153
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 63 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 112
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 113 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 111
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 112 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 111
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 112 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + + G L + + L
Sbjct: 62 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLF 111
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 112 QLLQGLAFCHSHRV---LHRDLKPENLLINTEGAIKLADFGLA 151
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 20/163 (12%)
Query: 483 NNFDMSAIMGEGSYGKL-YKGRLENGTSVAIRCLPSSK---KYTVRNXXXXXXXXXXXXH 538
++F++ +G+GS+GK+ + + A++ + K + VRN H
Sbjct: 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEH 74
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI- 597
P LV L D +F+V + + G+ R H+ +N K E + + I
Sbjct: 75 PFLVNLWYSFQDE--------EDMFMVVDLLLGGDLRYHLQQNVHFK----EETVKLFIC 122
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ A+ +L I + +K +NILL+EH ++D+ ++
Sbjct: 123 ELVMALDYLQNQRI---IHRDMKPDNILLDEHGHVHITDFNIA 162
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 64 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 113
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 114 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 151
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 50/214 (23%)
Query: 490 IMGEGSYGKLYKG-RLENG----TSVAIRCL-----PSSKKYTVRNXXXXXXXXXXXXHP 539
++G G++G +YKG + +G VAI+ L P + K + P
Sbjct: 24 VLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGS----P 79
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT----PGKVLNWSERLAV 595
++ LLG C+ + V LV + M G H+ EN +LNW ++A
Sbjct: 80 YVSRLLGICL---------TSTVQLVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQIAK 130
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS----IVSEDINSVGG 651
+ + V+ +H + N+L+ K++D+GL+ I + ++ GG
Sbjct: 131 GMSYLEDVRLVH---------RDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGG 181
Query: 652 KQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
K P W + + DV+S+G + E
Sbjct: 182 KV--PIKWMALESILRRRFTHQSDVWSYGVTVWE 213
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+S + G L + + L
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIK--SYLF 113
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 114 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 153
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 26/201 (12%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+G+G+ G +Y + G VAIR + ++ +P++V L
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYL---- 83
Query: 550 DGGGRDDYAV-NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
D Y V +++++V E+++ G+ ++E ++ + AV +A++FLH+
Sbjct: 84 -----DSYLVGDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHS 134
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKL---- 664
+ + +K++NILL KL+D+G S W ++
Sbjct: 135 NQV---IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRK 191
Query: 665 ----EDDVFSFGFMLLESVAG 681
+ D++S G M +E + G
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEG 212
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+S + G L + + L
Sbjct: 63 HPNIVKLLDVI--------HTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIK--SYLF 112
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 113 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 152
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 26/201 (12%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+G+G+ G +Y + G VAIR + ++ +P++V L
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYL---- 83
Query: 550 DGGGRDDYAV-NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
D Y V +++++V E+++ G+ ++E ++ + AV +A++FLH+
Sbjct: 84 -----DSYLVGDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHS 134
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKL---- 664
+ + +K++NILL KL+D+G S W ++
Sbjct: 135 NQV---IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 191
Query: 665 ----EDDVFSFGFMLLESVAG 681
+ D++S G M +E + G
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEG 212
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 26/201 (12%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+G+G+ G +Y + G VAIR + ++ +P++V L
Sbjct: 29 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYL---- 84
Query: 550 DGGGRDDYAV-NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
D Y V +++++V E+++ G+ ++E ++ + AV +A++FLH+
Sbjct: 85 -----DSYLVGDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHS 135
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKL---- 664
+ + +K++NILL KL+D+G S W ++
Sbjct: 136 NQV---IHRNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 192
Query: 665 ----EDDVFSFGFMLLESVAG 681
+ D++S G M +E + G
Sbjct: 193 AYGPKVDIWSLGIMAIEMIEG 213
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 26/201 (12%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
+G+G+ G +Y + G VAIR + ++ +P++V L
Sbjct: 29 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYL---- 84
Query: 550 DGGGRDDYAV-NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
D Y V +++++V E+++ G+ ++E ++ + AV +A++FLH+
Sbjct: 85 -----DSYLVGDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHS 135
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKL---- 664
+ + +K++NILL KL+D+G S W ++
Sbjct: 136 NQV---IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRK 192
Query: 665 ----EDDVFSFGFMLLESVAG 681
+ D++S G M +E + G
Sbjct: 193 AYGPKVDIWSLGIMAIEMIEG 213
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Query: 560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG--VAKAVQFLHTGVIPGFFNN 617
+ + LV M+ G+ + HI + E AV + ++ LH I
Sbjct: 257 DALCLVLTLMNGGDLKFHIYHMGQA---GFPEARAVFYAAEICCGLEDLHRERI---VYR 310
Query: 618 RVKTNNILLNEHRIAKLSDYGLSI-------VSEDINSVGGKQEDPNSWEMTKLEDDVFS 670
+K NILL++H ++SD GL++ + + +VG + E D ++
Sbjct: 311 DLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWA 370
Query: 671 FGFMLLESVAGPS-VAARKGQFLQEELDSL 699
G +L E +AG S RK + +EE++ L
Sbjct: 371 LGCLLYEMIAGQSPFQQRKKKIKREEVERL 400
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 31/216 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRN-------XXXXXXXXXX 535
+FD+ ++G GSY K+ RL+ + I + KK V +
Sbjct: 5 QDFDLLRVIGRGSYAKVLLVRLKK--TDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQA 62
Query: 536 XXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
HP LV L C R +F V E+++ G+ H+ + L
Sbjct: 63 SNHPFLVGL-HSCFQTESR-------LFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFY 111
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL---SIVSEDINSVGGK 652
++ A+ +LH G +K +N+LL+ KL+DYG+ + D S
Sbjct: 112 SAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSXFCG 168
Query: 653 QEDPNSWEMTKLED-----DVFSFGFMLLESVAGPS 683
+ + E+ + ED D ++ G ++ E +AG S
Sbjct: 169 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS 204
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 31/216 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRN-------XXXXXXXXXX 535
+FD+ ++G GSY K+ RL+ + I + KK V +
Sbjct: 20 QDFDLLRVIGRGSYAKVLLVRLKK--TDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQA 77
Query: 536 XXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
HP LV L C R +F V E+++ G+ H+ + L
Sbjct: 78 SNHPFLVGL-HSCFQTESR-------LFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFY 126
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL---SIVSEDINSVGGK 652
++ A+ +LH G +K +N+LL+ KL+DYG+ + D S
Sbjct: 127 SAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSXFCG 183
Query: 653 QEDPNSWEMTKLED-----DVFSFGFMLLESVAGPS 683
+ + E+ + ED D ++ G ++ E +AG S
Sbjct: 184 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS 219
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV 619
+++++V EF+ G T I +T +N + V + V +A+ +LH G + +
Sbjct: 115 DELWVVMEFLEGGAL-TDIVTHTR---MNEEQIATVCLSVLRALSYLHNQ---GVIHRDI 167
Query: 620 KTNNILLNEHRIAKLSDYGL-SIVSEDINSVGGKQEDPNSWEMTKL--------EDDVFS 670
K+++ILL KLSD+G + VS+++ P W ++ E D++S
Sbjct: 168 KSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKXLVGTPY-WMAPEVISRLPYGTEVDIWS 226
Query: 671 FGFMLLESVAG 681
G M++E + G
Sbjct: 227 LGIMVIEMIDG 237
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
Query: 478 LKEATNNFDMSAIMGEGSYGKLYKGR-LENG------TSVAIRCLPSSKKYTVRNXXXXX 530
L A ++ A +GEG+YGK++K R L+NG V ++ +
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 531 XXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWS 590
HP++V L C R D K+ LV+E + + + T++ + P +
Sbjct: 66 RHLETFEHPNVVRLFDVCT--VSRTDRE-TKLTLVFEHV-DQDLTTYL-DKVPEPGVPTE 120
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
++ + + + FLH+ + + +K NIL+ KL+D+GL+ +
Sbjct: 121 TIKDMMFQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLARI 169
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 31/216 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRN-------XXXXXXXXXX 535
+FD+ ++G GSY K+ RL+ + I + KK V +
Sbjct: 9 QDFDLLRVIGRGSYAKVLLVRLKK--TDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQA 66
Query: 536 XXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
HP LV L C R +F V E+++ G+ H+ + L
Sbjct: 67 SNHPFLVGL-HSCFQTESR-------LFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFY 115
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL---SIVSEDINSVGGK 652
++ A+ +LH G +K +N+LL+ KL+DYG+ + D S
Sbjct: 116 SAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSXFCG 172
Query: 653 QEDPNSWEMTKLED-----DVFSFGFMLLESVAGPS 683
+ + E+ + ED D ++ G ++ E +AG S
Sbjct: 173 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS 208
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG--VAKAVQFLHTGVIPGFFNNRVKT 621
LV M+ G+ + HI + E AV + ++ LH I +K
Sbjct: 261 LVLTLMNGGDLKFHIYHMGQA---GFPEARAVFYAAEICCGLEDLHRERI---VYRDLKP 314
Query: 622 NNILLNEHRIAKLSDYGLSI-------VSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFM 674
NILL++H ++SD GL++ + + +VG + E D ++ G +
Sbjct: 315 ENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCL 374
Query: 675 LLESVAGPS-VAARKGQFLQEELDSL 699
L E +AG S RK + +EE++ L
Sbjct: 375 LYEMIAGQSPFQQRKKKIKREEVERL 400
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTV-----RNXXX 528
L LKE F ++G G++G +YKG + G V I + +
Sbjct: 10 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 67
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 68 EAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGXLLDYVREHKDNIGSQ 118
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 119 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 169
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 170 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 212
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 40/229 (17%)
Query: 490 IMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHC 548
++G+G +G+ K E G + ++ L + T R HP+++ +G
Sbjct: 17 VLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVL 76
Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
Y ++ + E++ G R I + WS+R++ +A + +LH+
Sbjct: 77 --------YKDKRLNFITEYIKGGTLRGII--KSMDSQYPWSQRVSFAKDIASGMAYLHS 126
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ-EDPNS------- 658
I + + ++N L+ E++ ++D+GL+ +V E G + + P+
Sbjct: 127 MNI---IHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVV 183
Query: 659 ----WEMTKL--------EDDVFSFGFMLLESV----AGPSVAARKGQF 691
W ++ + DVFSFG +L E + A P R F
Sbjct: 184 GNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDF 232
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 134 LPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT 193
+P ++ L +DLS+N + S M +L TLIL N P FD L SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 194 FLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAI 226
LS+ N ++ + +S LS L + N +
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 258 RGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNK 317
+ L + LSNN S + + + QL L +S+N LR +PP L ++ L+L N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 318 FS 319
S
Sbjct: 114 IS 115
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 478 LKEATNNFDMSAIMGEGSYGKLYKGR-LENG------TSVAIRCLPSSKKYTVRNXXXXX 530
L A ++ A +GEG+YGK++K R L+NG V ++ +
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 531 XXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWS 590
HP++V L C R D K+ LV+E + + + T++ + P +
Sbjct: 66 RHLETFEHPNVVRLFDVCT--VSRTDRE-TKLTLVFEHV-DQDLTTYL-DKVPEPGVPTE 120
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
++ + + + FLH+ + + +K NIL+ KL+D+GL+
Sbjct: 121 TIKDMMFQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLA 167
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA+ L + + HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 63 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 112
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 113 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA+ L + + HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
++V LL + NK++LV+EF+ + + G L + + L +
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK--SYLFQL 111
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 112 LQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 23/180 (12%)
Query: 484 NFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTVRNXXX-----XXXXXXXXX 537
N+ + +GEGS+GK+ G VA++ + +KK ++
Sbjct: 5 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKII--NKKVLAKSDMQGRIEREISYLRLLR 62
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH++ L + +++ +V E+ N F + + ++ E
Sbjct: 63 HPHIIKLYDVI--------KSKDEIIMVIEYAGNELFDYIVQRDK----MSEQEARRFFQ 110
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPN 657
+ AV++ H I + +K N+LL+EH K++D+GLS + D N + PN
Sbjct: 111 QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPN 167
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 478 LKEATNNFDMSAIMGEGSYGKLYKGR-LENG------TSVAIRCLPSSKKYTVRNXXXXX 530
L A ++ A +GEG+YGK++K R L+NG V ++ +
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 531 XXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWS 590
HP++V L C R D K+ LV+E + + + T++ + P +
Sbjct: 66 RHLETFEHPNVVRLFDVCT--VSRTDRE-TKLTLVFEHV-DQDLTTYL-DKVPEPGVPTE 120
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
++ + + + FLH+ + + +K NIL+ KL+D+GL+
Sbjct: 121 TIKDMMFQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLA 167
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 31/184 (16%)
Query: 484 NFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTVRNXXX-----XXXXXXXXX 537
N+ + +GEGS+GK+ G VA++ + +KK ++
Sbjct: 9 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKII--NKKVLAKSDMQGRIEREISYLRLLR 66
Query: 538 HPHLVCLLGHCIDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
HPH++ L Y V +++ +V E+ N F + + ++ E
Sbjct: 67 HPHIIKL------------YDVIKSKDEIIMVIEYAGNELFDYIVQRDK----MSEQEAR 110
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ 653
+ AV++ H I + +K N+LL+EH K++D+GLS + D N +
Sbjct: 111 RFFQQIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSC 167
Query: 654 EDPN 657
PN
Sbjct: 168 GSPN 171
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+EF+ + G L + + L
Sbjct: 61 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIK--SYLF 110
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 111 QLLQGLAFCHSHRV---LHRDLKPENLLINTEGAIKLADFGLA 150
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 23/180 (12%)
Query: 484 NFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTVRNXXX-----XXXXXXXXX 537
N+ + +GEGS+GK+ G VA++ + +KK ++
Sbjct: 14 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKII--NKKVLAKSDMQGRIEREISYLRLLR 71
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH++ L + +++ +V E+ N F + + ++ E
Sbjct: 72 HPHIIKLYDVI--------KSKDEIIMVIEYAGNELFDYIVQRDK----MSEQEARRFFQ 119
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPN 657
+ AV++ H I + +K N+LL+EH K++D+GLS + D N + PN
Sbjct: 120 QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPN 176
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 23/180 (12%)
Query: 484 NFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTVRNXXX-----XXXXXXXXX 537
N+ + +GEGS+GK+ G VA++ + +KK ++
Sbjct: 15 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKII--NKKVLAKSDMQGRIEREISYLRLLR 72
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HPH++ L + +++ +V E+ N F + + ++ E
Sbjct: 73 HPHIIKLYDVI--------KSKDEIIMVIEYAGNELFDYIVQRDK----MSEQEARRFFQ 120
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPN 657
+ AV++ H I + +K N+LL+EH K++D+GLS + D N + PN
Sbjct: 121 QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPN 177
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 9 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 67 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGXLLDYVREHKDNIGSQ 117
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 118 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 169 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 211
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 13 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 70
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 71 EAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIGSQ 121
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 122 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 172
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 173 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 215
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 11 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 68
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 69 EAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIGSQ 119
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 120 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 170
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 171 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 213
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTV-----RNXXX 528
L LKE F ++G G++G +YKG + G V I + +
Sbjct: 9 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 67 EAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIGSQ 117
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 118 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 169 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 211
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 33/207 (15%)
Query: 490 IMGEGSYGKLYKG----RLENGTSVAIRCLPS-SKKYTVRNXXXXXXXXXXXXHPHLVCL 544
++G+G +G +Y G + +N AI+ L ++ V HP+++ L
Sbjct: 28 VIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLAL 87
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
+G + G + V L Y M +G+ I +P + + ++ + VA+ ++
Sbjct: 88 IGIMLPPEG-----LPHVLLPY--MCHGDLLQFI--RSPQRNPTVKDLISFGLQVARGME 138
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQED--PNSWE 660
+L F + + N +L+E K++D+GL+ I+ + SV + P W
Sbjct: 139 YLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKW- 194
Query: 661 MTKLE----------DDVFSFGFMLLE 677
T LE DV+SFG +L E
Sbjct: 195 -TALESLQTYRFTTKSDVWSFGVLLWE 220
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 10 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 67
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 68 EAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIGSQ 118
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 119 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 169
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 170 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 212
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 12 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 69
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 70 EAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIGSQ 120
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 121 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 171
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 172 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 214
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 16/174 (9%)
Query: 470 CRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXX 528
C S LE E N D ++G+G+YG +Y GR L N +AI+ +P +
Sbjct: 10 CESDLLEYDYEYDENGD-RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHE 68
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLN 588
H ++V LG + G K+F+ E + G+ + + + G + +
Sbjct: 69 EIALHKHLKHKNIVQYLGSFSENG------FIKIFM--EQVPGGSL-SALLRSKWGPLKD 119
Query: 589 WSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYGLS 640
+ + + + +++LH I + +K +N+L+N + + K+SD+G S
Sbjct: 120 NEQTIGFYTKQILEGLKYLHDNQI---VHRDIKGDNVLINTYSGVLKISDFGTS 170
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTV-----RNXXX 528
L LKE F ++G G++G +YKG + G V I + +
Sbjct: 11 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 68
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 69 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 119
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 120 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 170
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 171 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 213
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 34/246 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLEN--GTSVAIRCLPSSKKYTVRNXXXXXXXXXXXX- 537
A + ++ I+GEG +G++Y+G N G + + K T+ N
Sbjct: 22 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 81
Query: 538 --HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG-KVLNWSERLA 594
HPH+V L+G + +++ E G ++ N KVL +
Sbjct: 82 LDHPHIVKLIGIIEE---------EPTWIIMELYPYGELGHYLERNKNSLKVLT---LVL 129
Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-------IN 647
+ + KA+ +L + + + NIL+ KL D+GLS ED +
Sbjct: 130 YSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVT 186
Query: 648 SVGGKQEDPNSWEMTKL--EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR 705
+ K P S + DV+ F + E ++ ++ F E D + E
Sbjct: 187 RLPIKWMSPESINFRRFTTASDVWMFAVCMWEILS----FGKQPFFWLENKDVIGVLEKG 242
Query: 706 QRLVDP 711
RL P
Sbjct: 243 DRLPKP 248
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 34/246 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLEN--GTSVAIRCLPSSKKYTVRNXXXXXXXXXXXX- 537
A + ++ I+GEG +G++Y+G N G + + K T+ N
Sbjct: 6 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 65
Query: 538 --HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG-KVLNWSERLA 594
HPH+V L+G + +++ E G ++ N KVL +
Sbjct: 66 LDHPHIVKLIGIIEE---------EPTWIIMELYPYGELGHYLERNKNSLKVLT---LVL 113
Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-------IN 647
+ + KA+ +L + + + NIL+ KL D+GLS ED +
Sbjct: 114 YSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVT 170
Query: 648 SVGGKQEDPNSWEMTKL--EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR 705
+ K P S + DV+ F + E ++ ++ F E D + E
Sbjct: 171 RLPIKWMSPESINFRRFTTASDVWMFAVCMWEILS----FGKQPFFWLENKDVIGVLEKG 226
Query: 706 QRLVDP 711
RL P
Sbjct: 227 DRLPKP 232
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 9 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 67 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 117
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 118 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 169 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 211
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 34/246 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLEN--GTSVAIRCLPSSKKYTVRNXXXXXXXXXXXX- 537
A + ++ I+GEG +G++Y+G N G + + K T+ N
Sbjct: 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 69
Query: 538 --HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG-KVLNWSERLA 594
HPH+V L+G + +++ E G ++ N KVL +
Sbjct: 70 LDHPHIVKLIGIIEE---------EPTWIIMELYPYGELGHYLERNKNSLKVLT---LVL 117
Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-------IN 647
+ + KA+ +L + + + NIL+ KL D+GLS ED +
Sbjct: 118 YSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVT 174
Query: 648 SVGGKQEDPNSWEMTKL--EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR 705
+ K P S + DV+ F + E ++ ++ F E D + E
Sbjct: 175 RLPIKWMSPESINFRRFTTASDVWMFAVCMWEILS----FGKQPFFWLENKDVIGVLEKG 230
Query: 706 QRLVDP 711
RL P
Sbjct: 231 DRLPKP 236
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 34 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 91
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 92 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 142
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 143 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 193
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 194 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 236
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTV-----RNXXX 528
L LKE F ++G G++G +YKG + G V I + +
Sbjct: 12 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 69
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 70 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 120
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 121 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 171
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 172 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 214
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 255 KLPRGLVMAF-----LSNNSFSGEIPKQYG--QLNQLQQLDMSFNALRGMPPPAIFSLPN 307
KLP L+ +F L+ N E Y + +Q+L M FNA+R +PP ++P
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124
Query: 308 ISDLNLASNKFSGSLPKNL-NCGGKLVFFDISNNKL 342
++ L L N S SLP+ + + KL +SNN L
Sbjct: 125 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 159
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 158 VPPKISTMVKLQT-LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL 216
+PP + V L T L+L+ N ++ F + P LT LSM NN L + Q ++L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 217 SDLDLSKNAI 226
+L LS N +
Sbjct: 174 QNLQLSSNRL 183
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTV-----RNXXX 528
L LKE F ++G G++G +YKG + G V I + +
Sbjct: 12 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 69
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 70 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 120
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 121 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 171
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 172 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 214
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 19 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 76
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 77 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 127
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 128 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 178
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 179 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 221
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 15 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 72
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 73 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 123
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 124 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 174
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 175 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 217
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTV-----RNXXX 528
L LKE F ++G G++G +YKG + G V I + +
Sbjct: 16 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 73
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 74 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 124
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 125 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 175
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 176 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 218
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 12 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 69
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 70 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 120
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 121 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 171
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 172 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 214
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 3 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 60
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 61 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 111
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 112 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 162
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 163 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 205
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 255 KLPRGLVMAF-----LSNNSFSGEIPKQYG--QLNQLQQLDMSFNALRGMPPPAIFSLPN 307
KLP L+ +F L+ N E Y + +Q+L M FNA+R +PP ++P
Sbjct: 59 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118
Query: 308 ISDLNLASNKFSGSLPKNL-NCGGKLVFFDISNNKL 342
++ L L N S SLP+ + + KL +SNN L
Sbjct: 119 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 153
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 158 VPPKISTMVKLQT-LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL 216
+PP + V L T L+L+ N ++ F + P LT LSM NN L + Q ++L
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 217 SDLDLSKNAI 226
+L LS N +
Sbjct: 168 QNLQLSSNRL 177
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAI-----RCLPSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + G V I ++ +
Sbjct: 43 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILD 100
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 101 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 151
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 152 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 202
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 203 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 245
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 96/223 (43%), Gaps = 35/223 (15%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXH 538
+ M +G+G YG+++ G+ G VA++ ++++ + H
Sbjct: 33 RTIAKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTTEEASWFRETEIYQTVLMR-H 90
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
+++ + I G G + +++L+ ++ NG+ ++ T L+ L +
Sbjct: 91 ENILGFIAADIKGTG----SWTQLYLITDYHENGSLYDYLKSTT----LDAKSMLKLAYS 142
Query: 599 VAKAVQFLHTGVI-----PGFFNNRVKTNNILLNEHRIAKLSDYGLSI--VSE----DI- 646
+ LHT + P + +K+ NIL+ ++ ++D GL++ +S+ DI
Sbjct: 143 SVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIP 202
Query: 647 --NSVGGKQEDP----------NSWEMTKLEDDVFSFGFMLLE 677
VG K+ P N ++ + + D++SFG +L E
Sbjct: 203 PNTRVGTKRYMPPEVLDESLNRNHFQ-SYIMADMYSFGLILWE 244
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 9 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 67 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 117
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +AK + +L + + N+L+ + K++D+GL+ +
Sbjct: 118 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 169 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 211
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 138 IHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLS 196
+ L +L YL L+ N L S+P + + L+ L+L +N + FD L +LT+L+
Sbjct: 81 LKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAI 226
+ +N+L +++ L++LDLS N +
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 46/181 (25%)
Query: 138 IHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM 197
I L ++ YL L N L + + L LIL N + FD L +L L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 198 RNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLP 257
N+L +++ L+ L+L+ N + LP
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQS---------------------------LP 149
Query: 258 RGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNK 317
+G+ + +L L +LD+S+N L+ +P L + DL L N+
Sbjct: 150 KGV-----------------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
Query: 318 F 318
Sbjct: 193 L 193
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 20/163 (12%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNXXXXXXXXXXXXHP 539
N+ + MG G+ G+++K R + G +A++ + S K+ R P
Sbjct: 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCP 84
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN--GNFRTHISENTPGKVLNWSERLAVLI 597
++V G I VF+ E M + + P ++L + +
Sbjct: 85 YIVQCFGTFITN--------TDVFIAMELMGTCAEKLKKRMQGPIPERILG-----KMTV 131
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ KA+ +L G + VK +NILL+E KL D+G+S
Sbjct: 132 AIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGIS 172
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVC 543
+ + I G +G ++K +L N VA++ P K + ++ H +L+
Sbjct: 16 SLQLLEIKARGRFGCVWKAQLMN-DFVAVKIFPLQDKQSWQSEREIFSTPGMK-HENLL- 72
Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
I R +++L+ F G+ ++ G ++ W+E V +++ +
Sbjct: 73 ---QFIAAEKRGSNLEVELWLITAFHDKGSLTDYLK----GNIITWNELCHVAETMSRGL 125
Query: 604 QFLHTGV--------IPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+LH V P + K+ N+LL A L+D+GL++
Sbjct: 126 SYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAV 171
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 27/207 (13%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIR-CLPSSKKYTV---RNXXXXXXXXXXXXHP 539
FD+ +G GS+ +YKG L+ T+V + C +K T + HP
Sbjct: 29 KFDIE--IGRGSFKTVYKG-LDTETTVEVAWCELQDRKLTKSERQRFKEEAEXLKGLQHP 85
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV---LNWSERLAVL 596
++V D + LV E ++G +T++ K+ +W +
Sbjct: 86 NIVRFY----DSWESTVKGKKCIVLVTELXTSGTLKTYLKRFKVXKIKVLRSWCRQ---- 137
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-EHRIAKLSDYGLSIVSED--INSVGGKQ 653
+ K +QFLHT P + +K +NI + K+ D GL+ + +V G
Sbjct: 138 --ILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTP 194
Query: 654 E--DPNSWEMTKLED-DVFSFGFMLLE 677
E P +E E DV++FG LE
Sbjct: 195 EFXAPEXYEEKYDESVDVYAFGXCXLE 221
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 37/163 (22%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCL------PSSKKYTVRNXXXXXXXXXXXXHPHLVC 543
+GEGSYG ++K R + G VAI+ P KK +R HP+LV
Sbjct: 11 IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLK----HPNLVN 66
Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSN------GNFRTHISENTPGKVLNWSERLAVLI 597
LL + R ++ LV+E+ + ++ + E+ K + W
Sbjct: 67 LL----EVFRRK----RRLHLVFEYCDHTVLHELDRYQRGVPEHL-VKSITWQ------- 110
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+AV F H + VK NIL+ +H + KL D+G +
Sbjct: 111 -TLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFA 149
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 133 SLPDKIHR-LYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPS 191
+LP I + L +LE L ++ N L +V L L LD N + P FDSL
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 192 LTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAI 226
LT+LS+ N+L ++++L +L L N +
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 18/192 (9%)
Query: 147 LDLSSNFLFGSVPPK-ISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGP 205
LDL SN L S+P K + KL+ L L+DN F L +L L + +NKL
Sbjct: 42 LDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 206 FPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLPRGLVMAFL 265
++ L++L L +N + LP+G+
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---LPKGVFDKLT 157
Query: 266 S-------NNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF 318
S NN + +L +L+ L + N L+ +P A SL + L L N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN-- 215
Query: 319 SGSLPKNLNCGG 330
P + C G
Sbjct: 216 ----PWDCTCNG 223
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 140 RLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMR 198
+L +L L L N L S+PP++ ++ KL L L N + FD L SL L +
Sbjct: 107 QLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165
Query: 199 NNKLAGPFPSSIQRISTLSDLDLSKNAI 226
NN+L + +++ L L L N +
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 133 SLPDKI-HRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPS 191
SLP + +L SL+ L L +N L + +L+TL LD+N FDSL
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206
Query: 192 LTFLSMRNN 200
L L ++ N
Sbjct: 207 LKMLQLQEN 215
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 11 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 68
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 69 EAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIGSQ 119
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG----LS 640
+LNW + +AK + +L + + N+L+ + K++D+G L
Sbjct: 120 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 170
Query: 641 IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 171 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 213
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K N+FD ++G+G++GK+ R + G A++ L K V +
Sbjct: 6 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 65
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
HP L L YA +++ V E+ + G H+S ++E
Sbjct: 66 NTRHPFLTAL-----------KYAFQTHDRLCFVMEYANGGELFFHLSRERV-----FTE 109
Query: 592 RLAVLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
A G + A+++LH+ + +K N++L++ K++D+GL
Sbjct: 110 ERARFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 156
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K N+FD ++G+G++GK+ R + G A++ L K V +
Sbjct: 1 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
HP L L YA +++ V E+ + G H+S ++E
Sbjct: 61 NTRHPFLTAL-----------KYAFQTHDRLCFVMEYANGGELFFHLSRERV-----FTE 104
Query: 592 RLAVLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
A G + A+++LH+ + +K N++L++ K++D+GL
Sbjct: 105 ERARFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 151
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 11 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 68
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 69 EAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIGSQ 119
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG----LS 640
+LNW + +AK + +L + + N+L+ + K++D+G L
Sbjct: 120 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 170
Query: 641 IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 171 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 213
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXX 537
+ NF +GEG+YG +YK R + G VA++ L + +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V LL + NK++LV+E + + + G L + + L
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEHVDQDLKKFMDASALTGIPLPLIK--SYLF 113
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 114 QLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 153
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 13 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 70
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 71 EAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIGSQ 121
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG----LS 640
+LNW + +AK + +L + + N+L+ + K++D+G L
Sbjct: 122 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 172
Query: 641 IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 173 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 215
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K N+FD ++G+G++GK+ R + G A++ L K V +
Sbjct: 1 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
HP L L YA +++ V E+ + G H+S ++E
Sbjct: 61 NTRHPFLTAL-----------KYAFQTHDRLCFVMEYANGGELFFHLSRERV-----FTE 104
Query: 592 RLAVLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
A G + A+++LH+ + +K N++L++ K++D+GL
Sbjct: 105 ERARFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 151
>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E87|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3D0E|A Chain A, Crystal Structure Of Human Akt2 In Complex With Gsk690693
pdb|3D0E|B Chain B, Crystal Structure Of Human Akt2 In Complex With Gsk690693
Length = 335
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K N+FD ++G+G++GK+ R + G A++ L K V +
Sbjct: 1 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
HP L L YA +++ V E+ + G H+S ++E
Sbjct: 61 NTRHPFLTAL-----------KYAFQTHDRLCFVMEYANGGELFFHLSRERV-----FTE 104
Query: 592 RLAVLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
A G + A+++LH+ + +K N++L++ K++D+GL
Sbjct: 105 ERARFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 151
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K N+FD ++G+G++GK+ R + G A++ L K V +
Sbjct: 1 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
HP L L YA +++ V E+ + G H+S ++E
Sbjct: 61 NTRHPFLTAL-----------KYAFQTHDRLCFVMEYANGGELFFHLSRERV-----FTE 104
Query: 592 RLAVLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
A G + A+++LH+ + +K N++L++ K++D+GL
Sbjct: 105 ERARFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 151
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 11 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 68
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 69 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 119
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG----LS 640
+LNW + +AK + +L + + N+L+ + K++D+G L
Sbjct: 120 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 170
Query: 641 IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 171 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 213
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 31/174 (17%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSSKKYTVR-------NXXX 528
++K +F++ ++G+GS+GK++ + AI+ L KK V
Sbjct: 12 QIKLKIEDFELHKMLGKGSFGKVFLAEFKKTNQFFAIKAL---KKDVVLMDDDVECTMVE 68
Query: 529 XXXXXXXXXHP---HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
HP H+ C +F V E+++ G+ HI
Sbjct: 69 KRVLSLAWEHPFLTHMFCTFQ-----------TKENLFFVMEYLNGGDLMYHIQSCHK-- 115
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
+ S + +QFLH+ G +K +NILL++ K++D+G+
Sbjct: 116 -FDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGM 165
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTV-----RNXXX 528
L LKE F ++G G++G +YKG + G V I + +
Sbjct: 9 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 67 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 117
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG----LS 640
+LNW + +AK + +L + + N+L+ + K++D+G L
Sbjct: 118 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 168
Query: 641 IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 169 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 211
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K N+FD ++G+G++GK+ R + G A++ L K V +
Sbjct: 4 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 63
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
HP L L YA +++ V E+ + G H+S ++E
Sbjct: 64 NTRHPFLTAL-----------KYAFQTHDRLCFVMEYANGGELFFHLSRERV-----FTE 107
Query: 592 RLAVLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
A G + A+++LH+ + +K N++L++ K++D+GL
Sbjct: 108 ERARFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 154
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K N+FD ++G+G++GK+ R + G A++ L K V +
Sbjct: 1 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
HP L L YA +++ V E+ + G H+S ++E
Sbjct: 61 NTRHPFLTAL-----------KYAFQTHDRLCFVMEYANGGELFFHLSRERV-----FTE 104
Query: 592 RLAVLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
A G + A+++LH+ + +K N++L++ K++D+GL
Sbjct: 105 ERARFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 151
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNXXX 528
L LKE F ++G G++G +YKG + VAI+ L ++ +
Sbjct: 6 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 63
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 64 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 114
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV-- 642
+LNW + +A+ + +L + + N+L+ + K++D+GL+ +
Sbjct: 115 YLLNWC------VQIAEGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 165
Query: 643 --SEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 166 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 208
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 44/225 (19%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTV-----RNXXX 528
L LKE F ++G G++G +YKG + G V I + +
Sbjct: 16 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 73
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG---- 584
+PH+ LLG C+ + V L+ + M G ++ E+
Sbjct: 74 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 124
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG----LS 640
+LNW + +AK + +L + + N+L+ + K++D+G L
Sbjct: 125 YLLNWC------VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 175
Query: 641 IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
++ ++ GGK P W + + DV+S+G + E
Sbjct: 176 AEEKEYHAEGGKV--PIKWMALESILHRIYTHQSDVWSYGVTVWE 218
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 24/165 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRC--LPSSKKYTVRNXXXXXXXXXXXXHP 539
NF +GEG+YG +YK R + G VA++ L + + HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT----PGKVLNWSERLAV 595
++V LL + NK++LV+E + + + +T + + P ++ +
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEHV-HQDLKTFMDASALTGIPLPLIK-----SY 107
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
L + + + F H+ + + +K N+L+N KL+D+GL+
Sbjct: 108 LFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
L + I +A+AV+FLH+ G + +K +NI + K+ D+GL
Sbjct: 167 LHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGL 210
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 98/246 (39%), Gaps = 33/246 (13%)
Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS----KKYTVRNXXXXXXXXXXX 536
++ +++ I+G G +++ R L + VA++ L + + +R
Sbjct: 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLR-FRREAQNAAAL 69
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HP +V + D G + A ++V E++ R + P + + V+
Sbjct: 70 NHPAIVAVY----DTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVI 122
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSV------ 649
+A+ F H G + VK NI+++ K+ D+G++ +++ NSV
Sbjct: 123 ADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAV 179
Query: 650 -GGKQ---EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR 705
G Q + + DV+S G +L E + G + F + DS+ Q R
Sbjct: 180 IGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG------EPPFTGDSPDSVAYQHVR 233
Query: 706 QRLVDP 711
+ + P
Sbjct: 234 EDPIPP 239
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 457 SEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTS--VAIRC 514
S LG+E L +S EEL F +G+GS+G+++KG ++N T VAI+
Sbjct: 8 SSGVDLGTENL-YFQSMDPEEL------FTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKI 59
Query: 515 LP-SSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN 573
+ + + + P++ G + K++++ E++ G+
Sbjct: 60 IDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD--------TKLWIIMEYLGGGS 111
Query: 574 FRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
+ PG L+ ++ +L + K + +LH+ + +K N+LL+EH K
Sbjct: 112 ALDLLE---PGP-LDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVK 164
Query: 634 LSDYGLS 640
L+D+G++
Sbjct: 165 LADFGVA 171
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEIXINKMLNH 64
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 65 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 114 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 154
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEIXINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 65 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 114 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 154
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEIXINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 29/178 (16%)
Query: 476 EELKEATNN--------FDMSAIMGEGSYGK-LYKGRLENGTSVAIRCLPSS---KKYTV 523
E+ K+ +NN F+ ++G+GS+GK + R AI+ L + V
Sbjct: 4 EDRKQPSNNLDRVKLTDFNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDV 63
Query: 524 RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP 583
P + L C V++++ V E+++ G+ HI +
Sbjct: 64 ECTMVEKRVLALLDKPPFLTQLHSCFQ-------TVDRLYFVMEYVNGGDLMYHIQQ--- 113
Query: 584 GKVLNWSERLAVLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
V + E AV ++ + FLH G +K +N++L+ K++D+G+
Sbjct: 114 --VGKFKEPQAVFYAAEISIGLFFLHKR---GIIYRDLKLDNVMLDSEGHIKIADFGM 166
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 4 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 62
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 63 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 111
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 112 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 152
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 65 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 114 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 154
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 65 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 114 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 154
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 65 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 114 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 154
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINAMLNH 64
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 65 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 114 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 154
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF 318
LS N + + L++L+ LD+S+N +R + + LPN+ +L L +N+
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 65 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 114 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 154
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+YG +L R+ +VA++ + + N H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 65 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 114 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 154
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 30/182 (16%)
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVF-LVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HP+++ L +D Y N F LV++ M G +++E L+ E ++
Sbjct: 83 HPNIIQL---------KDTYETNTFFFLVFDLMKKGELFDYLTEKV---TLSEKETRKIM 130
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV---SEDINSVGGKQ 653
+ + + LH I + +K NILL++ KL+D+G S E + SV G
Sbjct: 131 RALLEVICALHKLNI---VHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLRSVCGTP 187
Query: 654 E--DPNSWEMTK--------LEDDVFSFGFMLLESVAG-PSVAARKGQFLQEELDSLNSQ 702
P E + E D++S G ++ +AG P RK + + S N Q
Sbjct: 188 SYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQ 247
Query: 703 EG 704
G
Sbjct: 248 FG 249
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVF-LVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HP+++ L +D Y N F LV++ M G +++E L+ E ++
Sbjct: 70 HPNIIQL---------KDTYETNTFFFLVFDLMKKGELFDYLTEKV---TLSEKETRKIM 117
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + LH I + +K NILL++ KL+D+G S
Sbjct: 118 RALLEVICALHKLNI---VHRDLKPENILLDDDMNIKLTDFGFS 158
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDP 656
VAK ++FL + + + NILL+E + K+ D+GL+ + +D + V G P
Sbjct: 202 VAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 258
Query: 657 NSW--------EMTKLEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 259 LKWMAPETIFDRVYTIQSDVWSFGVLLWE 287
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 17/164 (10%)
Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXX 536
++ ++ ++GEGSYG + K R + G VAI+ S K +
Sbjct: 22 QSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQL 81
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
H +LV LL C + +LV+EF+ + E P L++ L
Sbjct: 82 RHENLVNLLEVC--------KKKKRWYLVFEFVDHTILDD--LELFPNG-LDYQVVQKYL 130
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + F H+ I + +K NIL+++ + KL D+G +
Sbjct: 131 FQIINGIGFCHSHNI---IHRDIKPENILVSQSGVVKLCDFGFA 171
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDP 656
VAK ++FL + + + NILL+E + K+ D+GL+ + +D + V G P
Sbjct: 209 VAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 265
Query: 657 NSW--------EMTKLEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 266 LKWMAPETIFDRVYTIQSDVWSFGVLLWE 294
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDP 656
VAK ++FL + + + NILL+E + K+ D+GL+ + +D + V G P
Sbjct: 200 VAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 256
Query: 657 NSW--------EMTKLEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 257 LKWMAPETIFDRVYTIQSDVWSFGVLLWE 285
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 37 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 96
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L C +DD K++ + NG +I K+ ++ E
Sbjct: 97 PFFVKLY-FCF----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 143
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 144 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 186
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 491 MGEGSYGKLYKGRLENGTS--VAIRCLP-SSKKYTVRNXXXXXXXXXXXXHPHLVCLLGH 547
+G+GS+G+++KG ++N T VAI+ + + + + P++ G
Sbjct: 30 IGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGS 88
Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
+ K++++ E++ G+ + PG L+ ++ +L + K + +LH
Sbjct: 89 YLKD--------TKLWIIMEYLGGGSALDLLE---PGP-LDETQIATILREILKGLDYLH 136
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + +K N+LL+EH KL+D+G++
Sbjct: 137 S---EKKIHRDIKAANVLLSEHGEVKLADFGVA 166
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDP 656
VAK ++FL + + + NILL+E + K+ D+GL+ + +D + V G P
Sbjct: 207 VAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 263
Query: 657 NSW--------EMTKLEDDVFSFGFMLLE 677
W + ++ DV+SFG +L E
Sbjct: 264 LKWMAPETIFDRVYTIQSDVWSFGVLLWE 292
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 87/216 (40%), Gaps = 27/216 (12%)
Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS----KKYTVRNXXXXXXXXXXX 536
++ +++ I+G G +++ R L + VA++ L + + +R
Sbjct: 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLR-FRREAQNAAAL 69
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HP +V + D G + A ++V E++ R + P + + V+
Sbjct: 70 NHPAIVAVY----DTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVI 122
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSV------ 649
+A+ F H G + VK NIL++ K+ D+G++ +++ NSV
Sbjct: 123 ADACQALNFSHQN---GIIHRDVKPANILISATNAVKVVDFGIARAIADSGNSVXQTAAV 179
Query: 650 -GGKQ---EDPNSWEMTKLEDDVFSFGFMLLESVAG 681
G Q + + DV+S G +L E + G
Sbjct: 180 IGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG 215
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 78/213 (36%), Gaps = 52/213 (24%)
Query: 144 LEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNN-KL 202
L+ LDL++ L G +P + + L+ L+L N F+ + PSLT L +R N K
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKK 335
Query: 203 AGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLPRGLVM 262
++++ L LDLS N I
Sbjct: 336 LHLGVGCLEKLGNLQTLDLSHNDIEA---------------------------------- 361
Query: 263 AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSL 322
S Q L+ LQ L++S N G+ A P + L+LA + +
Sbjct: 362 --------SDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINA 413
Query: 323 P----KNLNCGGKL----VFFDISNNKLTGGLP 347
P +NL+ L F D SN L GLP
Sbjct: 414 PQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP 446
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 25/209 (11%)
Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXXXHPH 540
N+ + +G+G++ K+ R + G VA++ + ++ +++ HP+
Sbjct: 16 NYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHPN 75
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
+V L I+ ++LV E+ S G ++ + G+ + E A +
Sbjct: 76 IVKLF-EVIE-------TEKTLYLVMEYASGGEVFDYLVAH--GR-MKEKEARAKFRQIV 124
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGK--QED 655
AVQ+ H I + +K N+LL+ K++D+G S V +++ G
Sbjct: 125 SAVQYCHQKYI---VHRDLKAENLLLDGDMNIKIADFGFSNEFTVGNKLDTFCGSPPYAA 181
Query: 656 PNSWEMTKL---EDDVFSFGFMLLESVAG 681
P ++ K E DV+S G +L V+G
Sbjct: 182 PELFQGKKYDGPEVDVWSLGVILYTLVSG 210
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVF-LVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HP+++ L +D Y N F LV++ M G +++E L+ E ++
Sbjct: 83 HPNIIQL---------KDTYETNTFFFLVFDLMKKGELFDYLTEKV---TLSEKETRKIM 130
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + LH I + +K NILL++ KL+D+G S
Sbjct: 131 RALLEVICALHKLNI---VHRDLKPENILLDDDMNIKLTDFGFS 171
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 27/219 (12%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNXXXXXX 531
L ELK+ ++F+ + +G G+ G ++K +G +A + + K +RN
Sbjct: 1 MALGELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIREL 58
Query: 532 XXXXXXH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLN 588
+ P++V G Y+ ++ + E M G+ + + P ++L
Sbjct: 59 QVLHECNSPYIVGFYGAF--------YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG 110
Query: 589 WSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDI 646
V I V K + +L + VK +NIL+N KL D+G+S ++ E
Sbjct: 111 -----KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMA 163
Query: 647 NSVGGKQE--DPNSWEMTK--LEDDVFSFGFMLLESVAG 681
N G + P + T ++ D++S G L+E G
Sbjct: 164 NEFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 202
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 92/213 (43%), Gaps = 33/213 (15%)
Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXXXHPH 540
N+ + +G+G++ K+ R + G VAI+ + ++ +++ HP+
Sbjct: 13 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPN 72
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
+V L I+ ++L+ E+ S G ++ + G+ + E + +
Sbjct: 73 IVKLF-EVIE-------TEKTLYLIMEYASGGEVFDYLVAH--GR-MKEKEARSKFRQIV 121
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQED----- 655
AVQ+ H I + +K N+LL+ K++D+G S + +VGGK +
Sbjct: 122 SAVQYCHQKRI---VHRDLKAENLLLDADMNIKIADFGFS----NEFTVGGKLDTFCGSP 174
Query: 656 ----PNSWEMTKL---EDDVFSFGFMLLESVAG 681
P ++ K E DV+S G +L V+G
Sbjct: 175 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSG 207
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXXXHPH 540
N+ + +G+G++ K+ R + G VA+R + ++ +++ HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
+V L I+ ++LV E+ S G ++ + G+ + E A +
Sbjct: 75 IVKLF-EVIE-------TEKTLYLVMEYASGGEVFDYLVAH--GR-MKEKEARAKFRQIV 123
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGK--QED 655
AVQ+ H I + +K N+LL+ K++D+G S +++ G
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAA 180
Query: 656 PNSWEMTKL---EDDVFSFGFMLLESVAG 681
P ++ K E DV+S G +L V+G
Sbjct: 181 PELFQGKKYDGPEVDVWSLGVILYTLVSG 209
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 31/174 (17%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSSKKYTVR-------NXXX 528
++K +F + ++G+GS+GK++ + AI+ L KK V
Sbjct: 11 QIKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKAL---KKDVVLMDDDVECTMVE 67
Query: 529 XXXXXXXXXHP---HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
HP H+ C +F V E+++ G+ HI
Sbjct: 68 KRVLSLAWEHPFLTHMFCTFQ-----------TKENLFFVMEYLNGGDLMYHIQSCHK-- 114
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
+ S + +QFLH+ G +K +NILL++ K++D+G+
Sbjct: 115 -FDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGM 164
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXXXHPH 540
N+ + +G+G++ K+ R + G VA+R + ++ +++ HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
+V L I+ ++LV E+ S G ++ + G+ + E A +
Sbjct: 75 IVKLF-EVIE-------TEKTLYLVMEYASGGEVFDYLVAH--GR-MKEKEARAKFRQIV 123
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
AVQ+ H I + +K N+LL+ K++D+G S
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 491 MGEGSYGKLYKGRLENGTS--VAIRCLP-SSKKYTVRNXXXXXXXXXXXXHPHLVCLLGH 547
+G+GS+G+++KG ++N T VAI+ + + + + P++ G
Sbjct: 15 IGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGS 73
Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
+ K++++ E++ G+ + PG L+ ++ +L + K + +LH
Sbjct: 74 YLKD--------TKLWIIMEYLGGGSALDLLE---PGP-LDETQIATILREILKGLDYLH 121
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + +K N+LL+EH KL+D+G++
Sbjct: 122 S---EKKIHRDIKAANVLLSEHGEVKLADFGVA 151
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 491 MGEGSYGKLYKGRLENGTS--VAIRCLP-SSKKYTVRNXXXXXXXXXXXXHPHLVCLLGH 547
+G+GS+G+++KG ++N T VAI+ + + + + P++ G
Sbjct: 15 IGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGS 73
Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
+ K++++ E++ G+ + PG L+ ++ +L + K + +LH
Sbjct: 74 YLKD--------TKLWIIMEYLGGGSALDLLE---PGP-LDETQIATILREILKGLDYLH 121
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + +K N+LL+EH KL+D+G++
Sbjct: 122 S---EKKIHRDIKAANVLLSEHGEVKLADFGVA 151
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 22/170 (12%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K+ +F I+GEGS+ + R L AI+ L K+ V
Sbjct: 6 KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 65
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
HP V L D K++ + NG +I K+ ++ E
Sbjct: 66 RLDHPFFVKLYFTFQDD--------EKLYFGLSYAKNGELLKYIR-----KIGSFDETCT 112
Query: 595 VLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 113 RFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 159
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
LS+N +P L L LD+SFN L +P A+ L + +L L N+ P
Sbjct: 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
L KL ++NN+LT LP+ L N
Sbjct: 143 LLTPTPKLEKLSLANNQLT-ELPAGLLN 169
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 33/173 (19%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLP-SSKKYTVRNXXXXXXXXXXXXH 538
+++ F +G G+Y +YKG G VA++ + S++ T H
Sbjct: 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKH 62
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG-----------KVL 587
++V L + NK+ LV+EFM N + + ++ T G K
Sbjct: 63 ENIVRLYDVI--------HTENKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYF 113
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
W +L G+A F H I + +K N+L+N+ KL D+GL+
Sbjct: 114 QWQ----LLQGLA----FCHENKI---LHRDLKPQNLLINKRGQLKLGDFGLA 155
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 22/170 (12%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K+ +F I+GEGS+ + R L AI+ L K+ V
Sbjct: 5 KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 64
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
HP V L D K++ + NG +I K+ ++ E
Sbjct: 65 RLDHPFFVKLYFTFQDD--------EKLYFGLSYAKNGELLKYIR-----KIGSFDETCT 111
Query: 595 VLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 112 RFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 158
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
+LE+L+L NF++ V ++ KL+TL L N P F S +T++S+RNNKL
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 71 RHPNILRLYGYFHDA--------TRVYLILEYAPRGEVYKELQ-----KLSKFDEQRTAT 117
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 118 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 161
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 92/213 (43%), Gaps = 33/213 (15%)
Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXXXHPH 540
N+ + +G+G++ K+ R + G VAI+ + ++ +++ HP+
Sbjct: 16 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPN 75
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
+V L I+ ++L+ E+ S G ++ + G+ + E + +
Sbjct: 76 IVKLF-EVIE-------TEKTLYLIMEYASGGEVFDYLVAH--GR-MKEKEARSKFRQIV 124
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE------ 654
AVQ+ H I + +K N+LL+ K++D+G S + +VGGK +
Sbjct: 125 SAVQYCHQKRI---VHRDLKAENLLLDADMNIKIADFGFS----NEFTVGGKLDAFCGAP 177
Query: 655 ---DPNSWEMTKL---EDDVFSFGFMLLESVAG 681
P ++ K E DV+S G +L V+G
Sbjct: 178 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSG 210
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
LS+N +P L L LD+SFN L +P A+ L + +L L N+ P
Sbjct: 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
L KL ++NN+LT LP+ L N
Sbjct: 143 LLTPTPKLEKLSLANNQLT-ELPAGLLN 169
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 22/170 (12%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K+ +F I+GEGS+ + R L AI+ L K+ V
Sbjct: 4 KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 63
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
HP V L D K++ + NG +I K+ ++ E
Sbjct: 64 RLDHPFFVKLYFTFQDD--------EKLYFGLSYAKNGELLKYIR-----KIGSFDETCT 110
Query: 595 VLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 111 RFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 157
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 71 RHPNILRLYGYFHDA--------TRVYLILEYAPRGEVYKELQ-----KLSKFDEQRTAT 117
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 118 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 161
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 560 NKVFLVYEFMSNG---NFRTHISENTPGK--VLNWSERLAVLIGVAKAVQFLHTGVIPGF 614
++++LV + +S G + HI K VL+ S +L V + +++LH G
Sbjct: 86 DELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQ 142
Query: 615 FNNRVKTNNILLNEHRIAKLSDYGLS 640
+ VK NILL E +++D+G+S
Sbjct: 143 IHRDVKAGNILLGEDGSVQIADFGVS 168
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 560 NKVFLVYEFMSNG---NFRTHISENTPGK--VLNWSERLAVLIGVAKAVQFLHTGVIPGF 614
++++LV + +S G + HI K VL+ S +L V + +++LH G
Sbjct: 81 DELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQ 137
Query: 615 FNNRVKTNNILLNEHRIAKLSDYGLS 640
+ VK NILL E +++D+G+S
Sbjct: 138 IHRDVKAGNILLGEDGSVQIADFGVS 163
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 257 PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
PR V+ SN S IPKQ +L LQ+L+++ N L+ +P L ++ + L +N
Sbjct: 421 PRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Query: 317 KFSGSLPK 324
+ S P+
Sbjct: 479 PWDCSCPR 486
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R +N + A++ L + K
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 66 RHPNILRLYGYFHDS--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 112
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 113 YITELANALSYCHSKKV---IHRDIKPENLLLGSAGELKIADFGWSV 156
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 24/157 (15%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
++G GS+G +++ +L VAI+ + K++ R HP++V L
Sbjct: 47 VIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRE----LQIMRIVKHPNVVDLKAFFY 102
Query: 550 DGGGRDDYAVNKVF--LVYEFMSNGNFR-----THISENTPGKVLNWSERLAVLIGVAKA 602
G + D +VF LV E++ +R + + P ++ + + ++
Sbjct: 103 SNGDKKD----EVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKL-----YMYQLLRS 153
Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYG 638
+ ++H+ G + +K N+LL+ + KL D+G
Sbjct: 154 LAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFG 187
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 22/170 (12%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXX 534
K+ +F I+GEGS+ + R L AI+ L K+ V
Sbjct: 3 KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 62
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
HP V L D K++ + NG +I K+ ++ E
Sbjct: 63 RLDHPFFVKLYFTFQDD--------EKLYFGLSYAKNGELLKYIR-----KIGSFDETCT 109
Query: 595 VLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 110 RFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 156
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
L + + +A+AV+FLH+ G + +K +NI + K+ D+GL
Sbjct: 121 LHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGL 164
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 134 LPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT 193
LP +I L +L LDLS N L S+P ++ + +L+ DN T+P F +L +L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQ 319
Query: 194 FLSMRNNKLAGPF 206
FL + N L F
Sbjct: 320 FLGVEGNPLEKQF 332
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 35/227 (15%)
Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYT 522
L + R +TLE +FD+ +G+G +G +Y R + A++ L + K
Sbjct: 3 LGSKRQWTLE-------DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGV 55
Query: 523 VRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT 582
HP+++ L G+ D +V+L+ E+ G +
Sbjct: 56 EHQLRREVEIQSHLRHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ--- 104
Query: 583 PGKVLNWSE-RLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
K+ + E R A I +A A+ + H+ + + +K N+LL + K++D+G S
Sbjct: 105 --KLSRFDEQRTATYITELANALSYCHSKRV---IHRDIKPENLLLGSNGELKIADFGWS 159
Query: 641 I---VSEDINSVGGKQEDPNSWEMTKLED---DVFSFGFMLLESVAG 681
+ S G P ++ D D++S G + E + G
Sbjct: 160 VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 206
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 92 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 138
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 139 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 182
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYT 522
L + R +TLE +FD+ +G+G +G +Y R + A++ L + K
Sbjct: 3 LGSKRQWTLE-------DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGV 55
Query: 523 VRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT 582
HP+++ L G+ D +V+L+ E+ G +
Sbjct: 56 EHQLRREVEIQSHLRHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ--- 104
Query: 583 PGKVLNWSE-RLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
K+ + E R A I +A A+ + H+ + + +K N+LL + K++D+G S
Sbjct: 105 --KLSRFDEQRTATYITELANALSYCHSKRV---IHRDIKPENLLLGSNGELKIADFGWS 159
Query: 641 I 641
+
Sbjct: 160 V 160
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 87/216 (40%), Gaps = 27/216 (12%)
Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS----KKYTVRNXXXXXXXXXXX 536
++ +++ I+G G +++ R L + VA++ L + + +R
Sbjct: 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLR-FRREAQNAAAL 69
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HP +V + D G + A ++V E++ R + P + + V+
Sbjct: 70 NHPAIVAVY----DTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVI 122
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSV------ 649
+A+ F H G + VK NI+++ K+ D+G++ +++ NSV
Sbjct: 123 ADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAV 179
Query: 650 -GGKQ---EDPNSWEMTKLEDDVFSFGFMLLESVAG 681
G Q + + DV+S G +L E + G
Sbjct: 180 IGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG 215
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 92 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 138
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 139 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 182
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
LS+N +P L L LD+SFN L +P A+ L + +L L N+ P
Sbjct: 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
L KL ++NN+LT LP+ L N
Sbjct: 143 LLTPTPKLEKLSLANNQLT-ELPAGLLN 169
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/185 (17%), Positives = 77/185 (41%), Gaps = 18/185 (9%)
Query: 472 SFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXX 531
S L+E ++ ++G+G +G++Y GR ++ + + + ++
Sbjct: 22 SIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVM 81
Query: 532 XXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK-VLNWS 590
H ++V +G C+ + + G RT S K VL+ +
Sbjct: 82 AYRQTRHENVVLFMGACMSPPH---------LAIITSLCKG--RTLYSVVRDAKIVLDVN 130
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVG 650
+ + + K + +LH G + +K+ N+ + ++ ++D+GL +S + +
Sbjct: 131 KTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYDNGKVV-ITDFGLFSISGVLQA-- 184
Query: 651 GKQED 655
G++ED
Sbjct: 185 GRRED 189
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
LS+N +P L L LD+SFN L +P A+ L + +L L N+ P
Sbjct: 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
L KL ++NN+LT LP+ L N
Sbjct: 143 LLTPTPKLEKLSLANNQLT-ELPAGLLN 169
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 32/179 (17%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
+F ++G G +G+++K + +G + IR + KY H ++V
Sbjct: 13 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIRRV----KYNNEKAEREVKALAKLDHVNIV 68
Query: 543 CLLGHCIDGGGRD-----------DY-----------AVNKVFLVYEFMSNGNFRTHISE 580
G C DG D DY +F+ EF G I E
Sbjct: 69 HYNG-CWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWI-E 126
Query: 581 NTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
G+ L+ L + + K V ++H+ + +K +NI L + + K+ D+GL
Sbjct: 127 KRRGEKLDKVLALELFEQITKGVDYIHS---KKLIHRDLKPSNIFLVDTKQVKIGDFGL 182
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 64/179 (35%), Gaps = 45/179 (25%)
Query: 145 EYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG 204
E LDL S L + KL L LD N FD L L L + NN+LA
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 205 PFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLPRGLVMAF 264
++ L L L N + LP G+
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQL---------------------------KSLPSGV---- 126
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP 323
+ +L +L++L ++ N L+ +P A L N+ L+L++N+ S+P
Sbjct: 127 -------------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 64/179 (35%), Gaps = 45/179 (25%)
Query: 145 EYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG 204
E LDL S L + KL L LD N FD L L L + NN+LA
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 205 PFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLPRGLVMAF 264
++ L L L N + LP G+
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQL---------------------------KSLPSGV---- 126
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP 323
+ +L +L++L ++ N L+ +P A L N+ L+L++N+ S+P
Sbjct: 127 -------------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
LS+N +P L L LD+SFN L +P A+ L + +L L N+ P
Sbjct: 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
L KL ++NN LT LP+ L N
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLN 169
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 25/209 (11%)
Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXXXHPH 540
N+ + +G+G++ K+ R + G VA++ + ++ +++ HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIXKVLNHPN 74
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
+V L I+ ++LV E+ S G ++ + K E A +
Sbjct: 75 IVKLF-EVIE-------TEKTLYLVXEYASGGEVFDYLVAHGRXK---EKEARAKFRQIV 123
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGK--QED 655
AVQ+ H I + +K N+LL+ K++D+G S +++ G
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADXNIKIADFGFSNEFTFGNKLDAFCGAPPYAA 180
Query: 656 PNSWEMTKL---EDDVFSFGFMLLESVAG 681
P ++ K E DV+S G +L V+G
Sbjct: 181 PELFQGKKYDGPEVDVWSLGVILYTLVSG 209
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXX 535
ELK+ ++F+ + +G G+ G ++K +G +A + + K +RN
Sbjct: 64 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 121
Query: 536 XXH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLNWSER 592
+ P++V G Y+ ++ + E M G+ + + P ++L
Sbjct: 122 ECNSPYIVGFYGAF--------YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG---- 169
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
V I V K + +L + VK +NIL+N KL D+G+S ++ NS
Sbjct: 170 -KVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 226
Query: 651 GKQE--DPNSWEMT--KLEDDVFSFGFMLLESVAG 681
G + P + T ++ D++S G L+E G
Sbjct: 227 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 261
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 67 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 113
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGG 651
I +A A+ + H+ + + +K N+LL K++D+G S+ S + G
Sbjct: 114 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGT 170
Query: 652 KQEDPNSWEMTKLED---DVFSFGFMLLESVAG 681
P ++ D D++S G + E + G
Sbjct: 171 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 203
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
LS+N +P L L LD+SFN L +P A+ L + +L L N+ P
Sbjct: 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
L KL ++NN LT LP+ L N
Sbjct: 143 LLTPTPKLEKLSLANNDLT-ELPAGLLN 169
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXX 535
ELK+ ++F+ + +G G+ G ++K +G +A + + K +RN
Sbjct: 2 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59
Query: 536 XXH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLNWSER 592
+ P++V G Y+ ++ + E M G+ + + P ++L
Sbjct: 60 ECNSPYIVGFYGAF--------YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG---- 107
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
V I V K + +L + VK +NIL+N KL D+G+S ++ NS
Sbjct: 108 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164
Query: 651 GKQE--DPNSWEMTK--LEDDVFSFGFMLLESVAG 681
G + P + T ++ D++S G L+E G
Sbjct: 165 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXX 535
ELK+ ++F+ + +G G+ G ++K +G +A + + K +RN
Sbjct: 29 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 86
Query: 536 XXH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLNWSER 592
+ P++V G Y+ ++ + E M G+ + + P ++L
Sbjct: 87 ECNSPYIVGFYGAF--------YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG---- 134
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
V I V K + +L + VK +NIL+N KL D+G+S ++ NS
Sbjct: 135 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 191
Query: 651 GKQE--DPNSWEMTK--LEDDVFSFGFMLLESVAG 681
G + P + T ++ D++S G L+E G
Sbjct: 192 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 226
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 138 IHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM 197
+ R +L+ L L+SN + S++ L+ L L N+ +N +WF L SLTFL++
Sbjct: 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
Query: 198 RNN 200
N
Sbjct: 132 LGN 134
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 18/171 (10%)
Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
+++ LDLS+N + + V LQ L+L N N + F SL SL L + N L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 203 AGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLPRGLVM 262
+ S + +S+L+ L+L N L + ++
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNP------------------YKTLGETSLFSHLTKLQIL 154
Query: 263 AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNL 313
+ ++F+ K + L L++L++ + L+ P ++ S+ N+S L L
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 78/200 (39%), Gaps = 53/200 (26%)
Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
S+ +LDLS F+F T+ L+ L L N N F L +L L++ N L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 203 AGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLPRGLVM 262
+ S+ + ++ +DL KN I
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHI------------------------------------ 350
Query: 263 AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSL 322
A + + +F L +LQ LD+ NAL I +P+I D+ L+ NK +L
Sbjct: 351 AIIQDQTFKF--------LEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-TL 396
Query: 323 PKNLNCGGKLVFFDISNNKL 342
PK +N L+ +S N+L
Sbjct: 397 PK-INLTANLI--HLSENRL 413
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 281 LNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS----GSLPKNLNCGGKLVFFD 336
L+ LQ L ++ N L +PP L + L+L SN+ + LP NL D
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLE------ILD 532
Query: 337 ISNNKLTGGLP 347
IS N+L P
Sbjct: 533 ISRNQLLAPNP 543
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 278 YGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDI 337
YG L+ LQ L++S+N L + + LP ++ ++L N + + KL D+
Sbjct: 311 YG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Query: 338 SNNKLT 343
+N LT
Sbjct: 370 RDNALT 375
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 66 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 112
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGG 651
I +A A+ + H+ + + +K N+LL K++D+G S+ S + G
Sbjct: 113 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGT 169
Query: 652 KQEDPNSWEMTKLED---DVFSFGFMLLESVAG 681
P ++ D D++S G + E + G
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 202
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 33 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 92
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 93 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 139
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 140 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 182
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 66 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 112
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGG 651
I +A A+ + H+ + + +K N+LL K++D+G S+ S + G
Sbjct: 113 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGT 169
Query: 652 KQEDPNSWEMTKLED---DVFSFGFMLLESVAG 681
P ++ D D++S G + E + G
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 202
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
LS+N +P L L LD+SFN L +P A+ L + +L L N+ P
Sbjct: 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
L KL ++NN LT LP+ L N
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLN 169
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 92 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 138
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 139 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 181
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 138 IHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLS 196
+ L +L YL L+ N L S+P + + L+ L+L +N + FD L +LT+L
Sbjct: 81 LKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAI 226
+ +N+L +++ L+ LDL N +
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 133 SLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLP 190
SLPD + +L +L YL L N L S+P + + L L LD+N + FD L
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 191 SLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKN 224
L LS+ +N+L R+++L+ + L N
Sbjct: 182 QLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXX 535
ELK+ ++F+ + +G G+ G ++K +G +A + + K +RN
Sbjct: 2 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59
Query: 536 XXH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLNWSER 592
+ P++V G Y+ ++ + E M G+ + + P ++L
Sbjct: 60 ECNSPYIVGFYGAF--------YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG---- 107
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
V I V K + +L + VK +NIL+N KL D+G+S ++ NS
Sbjct: 108 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164
Query: 651 GKQE--DPNSWEMTK--LEDDVFSFGFMLLESVAG 681
G + P + T ++ D++S G L+E G
Sbjct: 165 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXXXHPH 540
N+ + +G+G++ K+ R + G VA++ + ++ +++ HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
+V L I+ ++LV E+ S G ++ + G+ + E A +
Sbjct: 75 IVKLF-EVIE-------TEKTLYLVMEYASGGEVFDYLVAH--GR-MKEKEARAKFRQIV 123
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGK--QED 655
AVQ+ H I + +K N+LL+ K++D+G S +++ G
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAA 180
Query: 656 PNSWEMTKL---EDDVFSFGFMLLESVAG 681
P ++ K E DV+S G +L V+G
Sbjct: 181 PELFQGKKYDGPEVDVWSLGVILYTLVSG 209
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXXXHPH 540
N+ + +G+G++ K+ R + G VA++ + ++ +++ HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
+V L I+ ++LV E+ S G ++ + G+ + E A +
Sbjct: 75 IVKLF-EVIE-------TEKTLYLVMEYASGGEVFDYLVAH--GR-MKEKEARAKFRQIV 123
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGK--QED 655
AVQ+ H I + +K N+LL+ K++D+G S +++ G
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAA 180
Query: 656 PNSWEMTKL---EDDVFSFGFMLLESVAG 681
P ++ K E DV+S G +L V+G
Sbjct: 181 PELFQGKKYDGPEVDVWSLGVILYTLVSG 209
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXX 535
ELK+ ++F+ + +G G+ G ++K +G +A + + K +RN
Sbjct: 2 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59
Query: 536 XXH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLNWSER 592
+ P++V G Y+ ++ + E M G+ + + P ++L
Sbjct: 60 ECNSPYIVGFYGAF--------YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG---- 107
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
V I V K + +L + VK +NIL+N KL D+G+S ++ NS
Sbjct: 108 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164
Query: 651 GKQE--DPNSWEMTK--LEDDVFSFGFMLLESVAG 681
G + P + T ++ D++S G L+E G
Sbjct: 165 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 33 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 92
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 93 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 139
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 140 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 182
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
LS+N +P L L LD+SFN L +P A+ L + +L L N+ P
Sbjct: 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
L KL ++NN LT LP+ L N
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLN 169
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 35 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 94
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 95 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 141
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 142 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 184
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXX 535
ELK+ ++F+ + +G G+ G ++K +G +A + + K +RN
Sbjct: 2 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59
Query: 536 XXH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLNWSER 592
+ P++V G Y+ ++ + E M G+ + + P ++L
Sbjct: 60 ECNSPYIVGFYGAF--------YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG---- 107
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
V I V K + +L + VK +NIL+N KL D+G+S ++ NS
Sbjct: 108 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164
Query: 651 GKQE--DPNSWEMTK--LEDDVFSFGFMLLESVAG 681
G + P + T ++ D++S G L+E G
Sbjct: 165 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 30 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 90 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 136
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 137 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 179
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXX 535
ELK+ ++F+ + +G G+ G ++K +G +A + + K +RN
Sbjct: 2 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59
Query: 536 XXH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLNWSER 592
+ P++V G Y+ ++ + E M G+ + + P ++L
Sbjct: 60 ECNSPYIVGFYGAF--------YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG---- 107
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
V I V K + +L + VK +NIL+N KL D+G+S ++ NS
Sbjct: 108 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164
Query: 651 GKQE--DPNSWEMTK--LEDDVFSFGFMLLESVAG 681
G + P + T ++ D++S G L+E G
Sbjct: 165 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 71 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 117
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGG 651
I +A A+ + H+ + + +K N+LL K++D+G S+ S + G
Sbjct: 118 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGT 174
Query: 652 KQEDPNSWEMTKLED---DVFSFGFMLLESVAG 681
P ++ D D++S G + E + G
Sbjct: 175 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 207
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXXXHPH 540
N+ + +G+G++ K+ R + G VA++ + ++ +++ HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
+V L I+ ++LV E+ S G ++ + G+ + E A +
Sbjct: 75 IVKLF-EVIE-------TEKTLYLVMEYASGGEVFDYLVAH--GR-MKEKEARAKFRQIV 123
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGK--QED 655
AVQ+ H I + +K N+LL+ K++D+G S +++ G
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDAFCGAPPYAA 180
Query: 656 PNSWEMTKL---EDDVFSFGFMLLESVAG 681
P ++ K E DV+S G +L V+G
Sbjct: 181 PELFQGKKYDGPEVDVWSLGVILYTLVSG 209
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 30 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 90 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 136
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 137 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 179
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 32/187 (17%)
Query: 510 VAIRCL---PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVY 566
VAI+ + P K+ T++ H ++V + ID DD +LV
Sbjct: 39 VAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSM----IDVDEEDDC----YYLVM 90
Query: 567 EFMSNGNFRTHISENTPGKV---LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNN 623
E++ +I + P V +N++ ++ I A ++ +H + P N
Sbjct: 91 EYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKP---------QN 141
Query: 624 ILLNEHRIAKLSDYGLS-IVSE----DINSVGGKQE----DPNSWEMTKLEDDVFSFGFM 674
IL++ ++ K+ D+G++ +SE N V G + + E T D++S G +
Sbjct: 142 ILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIV 201
Query: 675 LLESVAG 681
L E + G
Sbjct: 202 LYEMLVG 208
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 92 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 138
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 139 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 181
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 30 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 90 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 136
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 137 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 179
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 23 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 83 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 129
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 130 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 173
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 66 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 112
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 113 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 156
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 92 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 138
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 139 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 181
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 92 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 138
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 139 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 181
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 155 FGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIS 214
SVP I T Q L L DN P FD L LT L + NN+L +++
Sbjct: 29 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 86
Query: 215 TLSDLDLSKNAI 226
L+ L L+ N +
Sbjct: 87 QLTQLSLNDNQL 98
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 92 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 138
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 139 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 181
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 28/213 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 66 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 112
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGG 651
I +A A+ + H+ + + +K N+LL K++D+G S+ S G
Sbjct: 113 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 169
Query: 652 KQEDPNSWEMTKLED---DVFSFGFMLLESVAG 681
P ++ D D++S G + E + G
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 202
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
+LE+L+L NF++ V ++ KL+TL L N P F S +T++S+RNNKL
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226
Query: 203 A 203
Sbjct: 227 V 227
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
LS+N +P L L LD+SFN L +P A+ L + +L L N+ P
Sbjct: 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
L KL ++NN LT LP+ L N
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLN 169
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 136 DKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL 195
+ H L+ LDL++ L +P + + L+ L+L N F N + PSLT L
Sbjct: 272 NTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330
Query: 196 SMR-NNKLAGPFPSSIQRISTLSDLDLSKNAI 226
S++ N K ++ + L +LDLS + I
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP +V + D G + A ++V E++ R + P + + V+
Sbjct: 71 HPAIVAVY----DTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIA 123
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSV------- 649
+A+ F H G + VK NI+++ K+ D+G++ +++ NSV
Sbjct: 124 DACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI 180
Query: 650 GGKQ---EDPNSWEMTKLEDDVFSFGFMLLESVAG 681
G Q + + DV+S G +L E + G
Sbjct: 181 GTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG 215
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS 315
LP + + L++N P + + +QL LD FN++ + P LP + LNL
Sbjct: 23 LPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQH 82
Query: 316 NKFS 319
N+ S
Sbjct: 83 NELS 86
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 68 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 114
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 115 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 158
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 69 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 115
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 116 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 159
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%)
Query: 136 DKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL 195
D L LE L LS N + + + L TL L DN F+ L L L
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
Query: 196 SMRNNKLAGPFPSSIQRISTLSDLDLSK 223
+RNN + + R+ +L LDL +
Sbjct: 113 WLRNNPIESIPSYAFNRVPSLRRLDLGE 140
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 155 FGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIS 214
SVP I T Q L L DN P FD L LT L + NN+L +++
Sbjct: 21 LASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 215 TLSDLDLSKNAI 226
L+ L L+ N +
Sbjct: 79 QLTQLSLNDNQL 90
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 71 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 117
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 118 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 161
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%)
Query: 136 DKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL 195
D L LE L LS N + + + L TL L DN F+ L L L
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
Query: 196 SMRNNKLAGPFPSSIQRISTLSDLDLSK 223
+RNN + + R+ +L LDL +
Sbjct: 113 WLRNNPIESIPSYAFNRVPSLRRLDLGE 140
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 71 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 117
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 118 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 161
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 67 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 113
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 114 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 157
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 69 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 115
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 116 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 159
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 14 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 73
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 74 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 120
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 121 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 163
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 26/183 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 29 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 88
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 89 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 135
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDP 656
+ A+++LH G + +K NILLNE +++D+G + + S KQ
Sbjct: 136 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG----TAKVLSPESKQARA 188
Query: 657 NSW 659
NS+
Sbjct: 189 NSF 191
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 74/177 (41%), Gaps = 21/177 (11%)
Query: 478 LKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXX----XXXXX 533
L+ ++D+ ++G G++G++ R + V L S + R+
Sbjct: 70 LQMKAEDYDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSKFEMIKRSDSAFFWEERDIM 129
Query: 534 XXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE-NTPGKVLNWSER 592
P +V L D D Y +++V E+M G+ +S + P K +
Sbjct: 130 AFANSPWVVQLFCAFQD----DKY----LYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTA 181
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV 649
VL A+ +H+ G + VK +N+LL++H KL+D+G + ++ V
Sbjct: 182 EVVL-----ALDAIHS---MGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMV 230
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 29 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 88
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 89 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 135
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 136 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 178
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXX 535
ELK+ ++F+ + +G G+ G ++K +G +A + + K +RN
Sbjct: 21 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 78
Query: 536 XXH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLNWSER 592
+ P++V G Y+ ++ + E M G+ + + P ++L
Sbjct: 79 ECNSPYIVGFYGAF--------YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG---- 126
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
V I V K + +L + VK +NIL+N KL D+G+S ++ NS
Sbjct: 127 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 183
Query: 651 GKQE--DPNSWEMTK--LEDDVFSFGFMLLESVAG 681
G + P + T ++ D++S G L+E G
Sbjct: 184 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 218
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 28/213 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 69 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 115
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGG 651
I +A A+ + H+ + + +K N+LL K++D+G S+ S G
Sbjct: 116 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 172
Query: 652 KQEDPNSWEMTKLED---DVFSFGFMLLESVAG 681
P ++ D D++S G + E + G
Sbjct: 173 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 205
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 28/213 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 5 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 65 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 111
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGG 651
I +A A+ + H+ + + +K N+LL K++D+G S+ S G
Sbjct: 112 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 168
Query: 652 KQEDPNSWEMTKLED---DVFSFGFMLLESVAG 681
P ++ D D++S G + E + G
Sbjct: 169 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 201
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 138 IHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM 197
+ R +L+ L L+SN + S++ L+ L L N+ +N +WF L SLTFL++
Sbjct: 46 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 105
Query: 198 RNN 200
N
Sbjct: 106 LGN 108
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 18/171 (10%)
Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
+++ LDLS+N + + V LQ L+L N N + F SL SL L + N L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 203 AGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLPRGLVM 262
+ S + +S+L+ L+L N L + ++
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNP------------------YKTLGETSLFSHLTKLQIL 128
Query: 263 AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNL 313
+ ++F+ K + L L++L++ + L+ P ++ S+ N+S L L
Sbjct: 129 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
LS+N +P L L LD+SFN L +P A+ L + +L L N+ P
Sbjct: 85 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 143
Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
L KL ++NN LT LP+ L N
Sbjct: 144 LLTPTPKLEKLSLANNNLT-ELPAGLLN 170
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 72/164 (43%), Gaps = 9/164 (5%)
Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIR--CLPSSKKYTVRNXXXXXXXXXXX 536
+ + ++ A +G+G++G+++K R + G VA++ + + K+
Sbjct: 15 DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL 74
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
H ++V L+ C + ++LV++F + + N K SE V+
Sbjct: 75 KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHD--LAGLLSNVLVK-FTLSEIKRVM 131
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + ++H I + +K N+L+ + KL+D+GL+
Sbjct: 132 QMLLNGLYYIHRNKI---LHRDMKAANVLITRDGVLKLADFGLA 172
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 155 FGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIS 214
SVP I T Q L L DN P FD L LT L + NN+L +++
Sbjct: 21 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 215 TLSDLDLSKNAI 226
L+ L L+ N +
Sbjct: 79 QLTQLSLNDNQL 90
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 24/168 (14%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYT---VRNXXXXXXXXXXXXHPHLVCLLG 546
+G GS+G +Y R + N VAI+ + S K + ++ HP+ + G
Sbjct: 62 IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 121
Query: 547 HCIDGGGRDDYAVNKVFLVYEFM---SNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
+ R+ A +LV E+ ++ H K L E AV G + +
Sbjct: 122 CYL----REHTA----WLVMEYCLGSASDLLEVH------KKPLQEVEIAAVTHGALQGL 167
Query: 604 QFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG 651
+LH+ + VK NILL+E + KL D+G + + N G
Sbjct: 168 AYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVG 212
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS 315
LP + + L++N + + +QL LD+ FN + + P LP + LNL
Sbjct: 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 316 NKFS 319
N+ S
Sbjct: 83 NELS 86
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS 315
LP + + L++N + + +QL LD+ FN + + P LP + LNL
Sbjct: 33 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 316 NKFS 319
N+ S
Sbjct: 93 NELS 96
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 66 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 112
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 113 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 156
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS 315
LP + + L++N + + +QL LD+ FN + + P LP + LNL
Sbjct: 28 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 87
Query: 316 NKFS 319
N+ S
Sbjct: 88 NELS 91
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 10 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 70 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 116
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 117 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 160
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 66 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 112
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 113 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 156
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 66 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 112
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 113 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 156
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 72/164 (43%), Gaps = 9/164 (5%)
Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIR--CLPSSKKYTVRNXXXXXXXXXXX 536
+ + ++ A +G+G++G+++K R + G VA++ + + K+
Sbjct: 15 DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL 74
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
H ++V L+ C + ++LV++F + + N K SE V+
Sbjct: 75 KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHD--LAGLLSNVLVK-FTLSEIKRVM 131
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + ++H I + +K N+L+ + KL+D+GL+
Sbjct: 132 QMLLNGLYYIHRNKI---LHRDMKAANVLITRDGVLKLADFGLA 172
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP +V + D G + A ++V E++ R + P + + V+
Sbjct: 88 HPAIVAVY----DTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIA 140
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSV------- 649
+A+ F H G + VK NI+++ K+ D+G++ +++ NSV
Sbjct: 141 DACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI 197
Query: 650 GGKQ---EDPNSWEMTKLEDDVFSFGFMLLESVAG 681
G Q + + DV+S G +L E + G
Sbjct: 198 GTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG 232
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ R L AI+ L K+ V H
Sbjct: 30 EDFKFGKILGEGSFSTTVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 89
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 90 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRFYT 136
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 137 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 179
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 72/164 (43%), Gaps = 9/164 (5%)
Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIR--CLPSSKKYTVRNXXXXXXXXXXX 536
+ + ++ A +G+G++G+++K R + G VA++ + + K+
Sbjct: 14 DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL 73
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
H ++V L+ C + ++LV++F + + N K SE V+
Sbjct: 74 KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHD--LAGLLSNVLVK-FTLSEIKRVM 130
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + ++H I + +K N+L+ + KL+D+GL+
Sbjct: 131 QMLLNGLYYIHRNKI---LHRDMKAANVLITRDGVLKLADFGLA 171
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE-RLAV 595
HP+++ L G+ D +V+L+ E+ G + K+ + E R A
Sbjct: 69 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQ-----KLSKFDEQRTAT 115
Query: 596 LIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 116 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 159
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 4/194 (2%)
Query: 136 DKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL 195
D L+ LE L L N + + + L TL L DN+ F+ L L L
Sbjct: 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152
Query: 196 SMRNNKLAGPFPSSIQRISTLSDLDLSK-NAIXXXXXXXXXXXXXXXXXXXXXXXXXXXP 254
+RNN + + R+ +L LDL + + P
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Query: 255 KLPR--GLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLN 312
L GL +S N F P + L+ L++L + + + + A L ++ +LN
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272
Query: 313 LASNKFSGSLPKNL 326
LA N S SLP +L
Sbjct: 273 LAHNNLS-SLPHDL 285
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HP+++ L G+ D +V+L+ E+ G + + + +R A
Sbjct: 69 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQKLSKFD----EQRTATY 116
Query: 597 IG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
I +A A+ + H+ + + +K N+LL K++D+G S+
Sbjct: 117 ITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 159
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 24/168 (14%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYT---VRNXXXXXXXXXXXXHPHLVCLLG 546
+G GS+G +Y R + N VAI+ + S K + ++ HP+ + G
Sbjct: 23 IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 82
Query: 547 HCIDGGGRDDYAVNKVFLVYEFM---SNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
+ R+ A +LV E+ ++ H K L E AV G + +
Sbjct: 83 CYL----REHTA----WLVMEYCLGSASDLLEVH------KKPLQEVEIAAVTHGALQGL 128
Query: 604 QFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG 651
+LH+ + VK NILL+E + KL D+G + + N G
Sbjct: 129 AYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVG 173
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 26/153 (16%)
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P++V ++G C LV E G ++ +N K N E ++
Sbjct: 430 PYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIE---LVHQ 477
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED-- 655
V+ +++L F + + N+LL AK+SD+GLS + D N +
Sbjct: 478 VSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 534
Query: 656 PNSWEMTKL--------EDDVFSFGFMLLESVA 680
P W + + DV+SFG ++ E+ +
Sbjct: 535 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 567
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 557 YAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLNWSERLAVLIGVA---KAVQFLHTGVI 611
Y+ ++ + E M G+ + E P ++L +AVL G+A + Q +H
Sbjct: 84 YSDGEISICMEHMDGGSLDQVLKEAKRIPEEILG-KVSIAVLRGLAYLREKHQIMH---- 138
Query: 612 PGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQE--DPNSWEMTK--LE 665
VK +NIL+N KL D+G+S ++ NS G + P + T ++
Sbjct: 139 -----RDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHYSVQ 193
Query: 666 DDVFSFGFMLLESVAG 681
D++S G L+E G
Sbjct: 194 SDIWSMGLSLVELAVG 209
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 72/164 (43%), Gaps = 9/164 (5%)
Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIR--CLPSSKKYTVRNXXXXXXXXXXX 536
+ + ++ A +G+G++G+++K R + G VA++ + + K+
Sbjct: 15 DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL 74
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
H ++V L+ C + ++LV++F + + N K SE V+
Sbjct: 75 KHENVVNLIEICRTKASPYNRCKASIYLVFDFCEHD--LAGLLSNVLVK-FTLSEIKRVM 131
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + ++H I + +K N+L+ + KL+D+GL+
Sbjct: 132 QMLLNGLYYIHRNKI---LHRDMKAANVLITRDGVLKLADFGLA 172
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P++V ++G C LV E G ++ +N K N E ++
Sbjct: 431 PYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIE---LVHQ 478
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED-- 655
V+ +++L F + + N+LL AK+SD+GLS + D N +
Sbjct: 479 VSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 535
Query: 656 PNSWEMTKL--------EDDVFSFGFMLLES 678
P W + + DV+SFG ++ E+
Sbjct: 536 PVKWYAPECINYYKFSSKSDVWSFGVLMWEA 566
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNXXXXXXXXXXXXH 538
+F I+GEGS+ + R L AI+ L K+ V H
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 91
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P V L +DD K++ + NG +I K+ ++ E
Sbjct: 92 PFFVKLYFTF-----QDD---EKLYFGLSYAKNGCLLKYIR-----KIGSFDETCTRFYT 138
Query: 599 --VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ A+++LH G + +K NILLNE +++D+G + V
Sbjct: 139 AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKV 181
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 25/209 (11%)
Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNXXXXXXXXXXXXHPH 540
N+ + +G+G++ K+ R + G VA++ + ++ +++ HP+
Sbjct: 8 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 67
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
+V L I+ ++LV E+ S G ++ + + E A +
Sbjct: 68 IVKLF-EVIE-------TEKTLYLVMEYASGGEVFDYLVAHG---WMKEKEARAKFRQIV 116
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGK--QED 655
AVQ+ H I + +K N+LL+ K++D+G S +++ G
Sbjct: 117 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAA 173
Query: 656 PNSWEMTKL---EDDVFSFGFMLLESVAG 681
P ++ K E DV+S G +L V+G
Sbjct: 174 PELFQGKKYDGPEVDVWSLGVILYTLVSG 202
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 152 NFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQ 211
N SVP I T Q L L++N P FD L +L L +NKL
Sbjct: 21 NIRLASVPAGIPT--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 212 RISTLSDLDLSKNAI 226
+++ L+ LDL+ N +
Sbjct: 79 KLTQLTQLDLNDNHL 93
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPS---SKKYTVRNXXXXXXXXXXXXH 538
+++D+ +G G++G +++ G + A + + + S K TVR H
Sbjct: 51 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLR---H 107
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P LV L D N++ ++YEFMS G +++ ++ E + +
Sbjct: 108 PTLVNLHDAFEDD--------NEMVMIYEFMSGGELFEKVADEH--NKMSEDEAVEYMRQ 157
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI--AKLSDYGLS 640
V K + +H + + +K NI+ R KL D+GL+
Sbjct: 158 VCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLT 198
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Query: 482 TNNFDMSAIMGEGSYG--KLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXXXXXXXH 538
++D+ +GEG+ G +L R+ +VA++ + + N H
Sbjct: 5 VEDWDLVQTLGEGAAGEVQLAVNRVTE-EAVAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
++V GH +G N +L E+ S G I P + +
Sbjct: 64 ENVVKFYGHRREG--------NIQYLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
+ V +LH G+ G + +K N+LL+E K+SD+GL+ V
Sbjct: 113 LMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGLATV 153
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 25/164 (15%)
Query: 156 GSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSI-QRIS 214
SVP I T Q L L DN P FDSL +L L + +N+L G P + ++
Sbjct: 32 ASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 215 TLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLPRGLVMAFLSNNSFSGEI 274
L+ LDL N + L F+ N + E+
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVH--------------------LKELFMCCNKLT-EL 127
Query: 275 PKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF 318
P+ +L L L + N L+ +P A L +++ L N +
Sbjct: 128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 483 NNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPS---SKKYTVRNXXXXXXXXXXXXH 538
+++D+ +G G++G +++ G + A + + + S K TVR H
Sbjct: 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLR---H 213
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P LV L D N++ ++YEFMS G +++ ++ E + +
Sbjct: 214 PTLVNLHDAFEDD--------NEMVMIYEFMSGGELFEKVADEH--NKMSEDEAVEYMRQ 263
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI--AKLSDYGLS 640
V K + +H + + +K NI+ R KL D+GL+
Sbjct: 264 VCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLT 304
>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2-
Phenylaminopyrimidines As Potent Inhibitors Of Spleen
Tyrosine Kinase (Syk)
Length = 291
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P++V ++G C LV E G ++ +N K N E ++
Sbjct: 86 PYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIE---LVHQ 133
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED-- 655
V+ +++L F + + N+LL AK+SD+GLS + D N +
Sbjct: 134 VSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 190
Query: 656 PNSWEMTKL--------EDDVFSFGFMLLES 678
P W + + DV+SFG ++ E+
Sbjct: 191 PVKWYAPECINYYKFSSKSDVWSFGVLMWEA 221
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 491 MGEGSYGKLYKGRLENGTS--VAIRCLP-SSKKYTVRNXXXXXXXXXXXXHPHLVCLLGH 547
+G+GS+G++YKG ++N T VAI+ + + + + P++ G
Sbjct: 27 IGKGSFGEVYKG-IDNHTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYFGS 85
Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
+ K++++ E++ G + + PG L + +L + K + +LH
Sbjct: 86 YLKS--------TKLWIIMEYLGGG---SALDLLKPGP-LEETYIATILREILKGLDYLH 133
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + +K N+LL+E KL+D+G++
Sbjct: 134 S---ERKIHRDIKAANVLLSEQGDVKLADFGVA 163
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 84/212 (39%), Gaps = 26/212 (12%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSS---KKYTVRNXXXXXXXXXXX 536
A +F++ +G+G +G +Y R + + A++ L + K
Sbjct: 3 ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
HP+++ L G+ D +V+L+ E+ G + + + +R A
Sbjct: 63 RHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQKLSKFD----EQRTATY 110
Query: 597 IG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGK 652
I +A A+ + H+ + + +K N+LL K++D+G S+ S G
Sbjct: 111 ITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTL 167
Query: 653 QEDPNSWEMTKLED---DVFSFGFMLLESVAG 681
P ++ D D++S G + E + G
Sbjct: 168 DYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 199
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 471 RSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNX 526
R FT+ ++FD+ +G+G +G +Y R +N +A++ L S K+
Sbjct: 9 RKFTI-------DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQL 61
Query: 527 XXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV 586
HP+++ + + D +++L+ EF G + ++ G+
Sbjct: 62 RREIEIQSHLRHPNILRMYNYFHDR--------KRIYLMLEFAPRGELYKELQKH--GR- 110
Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+ + +A A+ + H + + +K N+L+ K++D+G S+
Sbjct: 111 FDEQRSATFMEELADALHYCHERKV---IHRDIKPENLLMGYKGELKIADFGWSV 162
>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P++V ++G C LV E G ++ +N K N E ++
Sbjct: 72 PYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIE---LVHQ 119
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED-- 655
V+ +++L F + + N+LL AK+SD+GLS + D N +
Sbjct: 120 VSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENXYKAQTHGKW 176
Query: 656 PNSWEMTKL--------EDDVFSFGFMLLES 678
P W + + DV+SFG ++ E+
Sbjct: 177 PVKWYAPECINYYKFSSKSDVWSFGVLMWEA 207
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 471 RSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNX 526
R FT+ ++FD+ +G+G +G +Y R +N +A++ L S K+
Sbjct: 10 RKFTI-------DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQL 62
Query: 527 XXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV 586
HP+++ + + D +++L+ EF G + ++ G+
Sbjct: 63 RREIEIQSHLRHPNILRMYNYFHDR--------KRIYLMLEFAPRGELYKELQKH--GR- 111
Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+ + +A A+ + H + + +K N+L+ K++D+G S+
Sbjct: 112 FDEQRSATFMEELADALHYCHERKV---IHRDIKPENLLMGYKGELKIADFGWSV 163
>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2-
Phenylcyclopropyl)urea
Length = 293
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 26/151 (17%)
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P++V ++G C LV E G ++ +N K N E ++
Sbjct: 88 PYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIE---LVHQ 135
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGKQED 655
V+ +++L F + + N+LL AK+SD+GLS E+ +
Sbjct: 136 VSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 192
Query: 656 PNSWEMTKL--------EDDVFSFGFMLLES 678
P W + + DV+SFG ++ E+
Sbjct: 193 PVKWYAPECINYYKFSSKSDVWSFGVLMWEA 223
>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Pyrazolylbenzimidazole Inhibitor 416
pdb|3VF9|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Thienopyrazolylindole Inhibitor 027
pdb|3TUC|A Chain A, Crystal Structure Of Syk Kinase Domain With
1-Benzyl-N-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-2-Oxo-1,
2-Dihydropyridine-3- Carboxamide
pdb|3TUD|A Chain A, Crystal Structure Of Syk Kinase Domain With
N-(4-Methyl-3-(8-Methyl-7-
Oxo-2-(Phenylamino)-7,8-Dihydropyrido[2,
3-D]pyrimidin-6-Yl)phenyl)-3- (Trifluoromethyl)benzamide
Length = 299
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 26/151 (17%)
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P++V ++G C LV E G ++ +N K N E ++
Sbjct: 88 PYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIE---LVHQ 135
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGKQED 655
V+ +++L F + + N+LL AK+SD+GLS E+ +
Sbjct: 136 VSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 192
Query: 656 PNSWEMTKL--------EDDVFSFGFMLLES 678
P W + + DV+SFG ++ E+
Sbjct: 193 PVKWYAPECINYYKFSSKSDVWSFGVLMWEA 223
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 22/147 (14%)
Query: 482 TNNFDMSAIMGEGSYGKLYKGRLENGTSV--AIRCLPSSKKYTVRNXXXXXXXXXXXXHP 539
T+ +++ +G GSY + K + T++ A++ + SK+ HP
Sbjct: 21 TDGYEVKEDIGVGSYS-VCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQ---HP 76
Query: 540 HLVCLLGHCIDGGGRDDYAVNK-VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
+++ L +D Y K V++V E M G I K + E AVL
Sbjct: 77 NIITL---------KDVYDDGKYVYVVTELMKGGELLDKILRQ---KFFSEREASAVLFT 124
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNIL 625
+ K V++LH G + +K +NIL
Sbjct: 125 ITKTVEYLHA---QGVVHRDLKPSNIL 148
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
++V E++ R + P + + V+ +A+ F H G + VK
Sbjct: 92 YIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQALNFSHQN---GIIHRDVKPA 145
Query: 623 NILLNEHRIAKLSDYGLS-IVSEDINSV-------GGKQ---EDPNSWEMTKLEDDVFSF 671
NI+++ K+ D+G++ +++ NSV G Q + + DV+S
Sbjct: 146 NIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSL 205
Query: 672 GFMLLESVAG 681
G +L E + G
Sbjct: 206 GCVLYEVLTG 215
>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P++V ++G C LV E G ++ +N K N E ++
Sbjct: 72 PYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIE---LVHQ 119
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED-- 655
V+ +++L F + + N+LL AK+SD+GLS + D N +
Sbjct: 120 VSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 176
Query: 656 PNSWEMTKL--------EDDVFSFGFMLLES 678
P W + + DV+SFG ++ E+
Sbjct: 177 PVKWYAPECINYYKFSSKSDVWSFGVLMWEA 207
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 134 LPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT 193
LPD L +L +LDLS L P +++ LQ L + N + FD L SL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 194 FLSMRNNKLAGPFPSSIQRISTLS 217
+ + N P+ S RI LS
Sbjct: 522 KIWLHTN----PWDCSCPRIDYLS 541
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 265 LSNNSFSGE-IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF 318
++ NSF +P + +L L LD+S L + P A SL ++ LN+ASN+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain
pdb|1XBB|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Gleevec
pdb|1XBC|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Staurosporin
pdb|3FQE|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
Ym193306
pdb|3FQH|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQH|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQS|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
R406
pdb|4FL1|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
pdb|4FYN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
3-(8-{4-
[ethyl-(2-hydroxy-ethyl)-amino]-phenylamino}-imidazo[1,
2-a]pyrazin-5- Yl)-phenol
pdb|4FYO|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
N-{(s)-1-
[7-(3,4-dimethoxy-phenylamino)-thiazolo[5,
4-d]pyrimidin-5-yl]- Pyrrolidin-3-yl}-terephthalamic
Acid
pdb|4FZ6|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
[6-((s)-2-
Methyl-pyrrolidin-1-yl)-pyridin-2-yl]-(6-phenyl-
imidazo[1,2- B]pyridazin-8-yl)-amine
Length = 291
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P++V ++G C LV E G ++ +N K N E ++
Sbjct: 78 PYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIE---LVHQ 125
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED-- 655
V+ +++L F + + N+LL AK+SD+GLS + D N +
Sbjct: 126 VSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 182
Query: 656 PNSWEMTKL--------EDDVFSFGFMLLES 678
P W + + DV+SFG ++ E+
Sbjct: 183 PVKWYAPECINYYKFSSKSDVWSFGVLMWEA 213
>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836
Length = 273
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P++V ++G C LV E G ++ +N K N E ++
Sbjct: 66 PYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIE---LVHQ 113
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED-- 655
V+ +++L F + + N+LL AK+SD+GLS + D N +
Sbjct: 114 VSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 170
Query: 656 PNSWEMTKL--------EDDVFSFGFMLLES 678
P W + + DV+SFG ++ E+
Sbjct: 171 PVKWYAPECINYYKFSSKSDVWSFGVLMWEA 201
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 471 RSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNX 526
R FT+ ++FD+ +G+G +G +Y R +N +A++ L S K+
Sbjct: 9 RKFTI-------DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQL 61
Query: 527 XXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV 586
HP+++ + + D +++L+ EF G + ++ G+
Sbjct: 62 RREIEIQSHLRHPNILRMYNYFHDR--------KRIYLMLEFAPRGELYKELQKH--GR- 110
Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+ + +A A+ + H + + +K N+L+ K++D+G S+
Sbjct: 111 FDEQRSATFMEELADALHYCHERKV---IHRDIKPENLLMGYKGELKIADFGWSV 162
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/156 (17%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G++++G+ G VA++ SS++ H +++ I
Sbjct: 50 IGKGRFGEVWRGKW-RGEEVAVKIF-SSREERSWFREAEIYQTVMLRHENILGF----IA 103
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+D+ +++LV ++ +G+ +++ T + + + + A + LH +
Sbjct: 104 ADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEI 159
Query: 611 I-----PGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+ P + +K+ NIL+ ++ ++D GL++
Sbjct: 160 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 195
>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A Sulfonamidopyrazine Piperidine Inhibitor
pdb|4DFN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
An Adamantylpyrazine Inhibitor
Length = 274
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
P++V ++G C LV E G ++ +N K N E ++
Sbjct: 68 PYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIE---LVHQ 115
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED-- 655
V+ +++L F + + N+LL AK+SD+GLS + D N +
Sbjct: 116 VSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 172
Query: 656 PNSWEMTKL--------EDDVFSFGFMLLES 678
P W + + DV+SFG ++ E+
Sbjct: 173 PVKWYAPECINYYKFSSKSDVWSFGVLMWEA 203
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 133 SLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLP 190
SLP+ + ++L SL YL+LS+N L S+P + + +L+ L L+ N + FD L
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT 124
Query: 191 SLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKN 224
L L + N+L R+++L + L N
Sbjct: 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 144 LEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLA 203
L YLDLSSN L S + L+ L+L +N N F+ + L L + N+++
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 204 GPFPSSI----QRISTLSDLDLSKNAI 226
FP + ++ L LDLS N +
Sbjct: 150 R-FPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/156 (17%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G++++G+ G VA++ SS++ H +++ I
Sbjct: 37 IGKGRFGEVWRGKW-RGEEVAVKIF-SSREERSWFREAEIYQTVMLRHENILGF----IA 90
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+D+ +++LV ++ +G+ +++ T + + + + A + LH +
Sbjct: 91 ADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEI 146
Query: 611 I-----PGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+ P + +K+ NIL+ ++ ++D GL++
Sbjct: 147 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 182
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 140 RLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPN-WFDSLPSLTFLSMR 198
L LE L LS N + + + L TL L DN TIPN F L L L +R
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR 144
Query: 199 NNKLAGPFPSSIQRISTLSDLDLSK 223
NN + + RI +L LDL +
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGE 169
>pdb|3JUH|A Chain A, Crystal Structure Of A Mutant Of Human Protein Kinase
Ck2alpha With Altered Cosubstrate Specificity
pdb|3JUH|B Chain B, Crystal Structure Of A Mutant Of Human Protein Kinase
Ck2alpha With Altered Cosubstrate Specificity
Length = 335
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNN 623
LV+E ++N +F+ T + + + + KA+ + H+ G + VK +N
Sbjct: 111 LVFEHVNNTDFKQLYQTLTDYDIRFY------MYEILKALDYCHSM---GIMHRDVKPHN 161
Query: 624 ILLN-EHRIAKLSDYGLS 640
+L++ EHR +L D+GL+
Sbjct: 162 VLIDHEHRKLRLIDWGLA 179
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/156 (17%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G++++G+ G VA++ SS++ H +++ I
Sbjct: 12 IGKGRFGEVWRGKW-RGEEVAVKIF-SSREERSWFREAEIYQTVMLRHENILGF----IA 65
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+D+ +++LV ++ +G+ +++ T + + + + A + LH +
Sbjct: 66 ADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEI 121
Query: 611 I-----PGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+ P + +K+ NIL+ ++ ++D GL++
Sbjct: 122 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 157
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/156 (17%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G++++G+ G VA++ SS++ H +++ I
Sbjct: 11 IGKGRFGEVWRGKW-RGEEVAVKIF-SSREERSWFREAEIYQTVMLRHENILGF----IA 64
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+D+ +++LV ++ +G+ +++ T + + + + A + LH +
Sbjct: 65 ADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEI 120
Query: 611 I-----PGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+ P + +K+ NIL+ ++ ++D GL++
Sbjct: 121 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS 315
LP + L N+ P + +L+++D+S N + + P A L +++ L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 316 NKFSGSLPKNL 326
NK + LPK+L
Sbjct: 90 NKIT-ELPKSL 99
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/156 (17%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G++++G+ G VA++ SS++ H +++ I
Sbjct: 17 IGKGRFGEVWRGKW-RGEEVAVKIF-SSREERSWFREAEIYQTVMLRHENILGF----IA 70
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+D+ +++LV ++ +G+ +++ T + + + + A + LH +
Sbjct: 71 ADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEI 126
Query: 611 I-----PGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+ P + +K+ NIL+ ++ ++D GL++
Sbjct: 127 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 162
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS 315
LP + L N+ P + +L+++D+S N + + P A L +++ L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 316 NKFSGSLPKNL 326
NK + LPK+L
Sbjct: 90 NKIT-ELPKSL 99
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 273 EIPKQ-YGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF 318
E+P + L L+ ++ N LR MP +P + LNLASN+
Sbjct: 160 EMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQL 206
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/156 (17%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
+G+G +G++++G+ G VA++ SS++ H +++ I
Sbjct: 14 IGKGRFGEVWRGKW-RGEEVAVKIF-SSREERSWFREAEIYQTVMLRHENILGF----IA 67
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
+D+ +++LV ++ +G+ +++ T + + + + A + LH +
Sbjct: 68 ADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEI 123
Query: 611 I-----PGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
+ P + +K+ NIL+ ++ ++D GL++
Sbjct: 124 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 159
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 70/175 (40%), Gaps = 13/175 (7%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS--KKYTVRN 525
AC S + + ++ + +G G+YG + K R + +G +A++ + ++ + R
Sbjct: 37 ACISIGNQNFEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRL 96
Query: 526 XXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
P V G G V++ E M + + G+
Sbjct: 97 LMDLDISMRTVDCPFTVTFYGALFREGD--------VWICMELMDTSLDKFYKQVIDKGQ 148
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ + + + KA++ LH+ + + VK +N+L+N K+ D+G+S
Sbjct: 149 TIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGIS 201
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 51/94 (54%), Gaps = 13/94 (13%)
Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-----IVSEDINS- 648
+ + + KA++ LH+ + + VK +N+L+N K+ D+G+S V++DI++
Sbjct: 114 IAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAG 171
Query: 649 ----VGGKQEDPN-SWEMTKLEDDVFSFGFMLLE 677
+ ++ +P + + ++ D++S G ++E
Sbjct: 172 CKPYMAPERINPELNQKGYSVKSDIWSLGITMIE 205
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 255 KLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLA 314
+LP LV L N +G P + + +Q+L + N ++ + L + LNL
Sbjct: 52 RLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 315 SNKFSGSLPKNLNCGGKLVFFDISNN 340
N+ S +P + L ++++N
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 255 KLPRGLVM---AFLSNNSFSGEIPKQ--YGQLNQLQQLDMSFNALRGMPPPAIFSLPNIS 309
++PR + + L N++ G I +G+L L +L++ N L G+ P A +I
Sbjct: 22 EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81
Query: 310 DLNLASNKF 318
+L L NK
Sbjct: 82 ELQLGENKI 90
>pdb|2X9M|A Chain A, Hendra Virus Attachment Glycoprotein
pdb|2X9M|B Chain B, Hendra Virus Attachment Glycoprotein
pdb|2X9M|C Chain C, Hendra Virus Attachment Glycoprotein
pdb|2X9M|D Chain D, Hendra Virus Attachment Glycoprotein
Length = 420
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 319 SGSLPKNLNCGGKLV--FFDISNNKLTGGLPSCLSN 352
SG L NL+ GG ++ F +I++N+LT G PS + N
Sbjct: 227 SGLLKYNLSLGGDIILQFIEIADNRLTIGSPSKIYN 262
>pdb|2VSK|A Chain A, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
pdb|2VSK|C Chain C, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 416
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 319 SGSLPKNLNCGGKLV--FFDISNNKLTGGLPSCLSN 352
SG L NL+ GG ++ F +I++N+LT G PS + N
Sbjct: 224 SGLLKYNLSLGGDIILQFIEIADNRLTIGSPSKIYN 259
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 155 FGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIS 214
SVP I T Q L L N P FDSL LT+L++ N+L +++
Sbjct: 31 LASVPAGIPTTT--QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 215 TLSDLDLSKNAI 226
L+ L L N +
Sbjct: 89 KLTHLALHINQL 100
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
HP++V L+ DD + +++V+E ++ G + E K L+ +
Sbjct: 95 HPNVVKLVEVL------DDPNEDHLYMVFELVNQGP----VMEVPTLKPLSEDQARFYFQ 144
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
+ K +++LH I + +K +N+L+ E K++D+G+S
Sbjct: 145 DLIKGIEYLHYQKI---IHRDIKPSNLLVGEDGHIKIADFGVS 184
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 134 LPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILD-DNFFN-NTIPNWFDSLPS 191
LPD L +L +LDLS L P +++ LQ L + +NFF+ +T P + L S
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNS 224
Query: 192 LTFLSMRNNKLAGPFPSSIQRI-STLSDLDLSKN 224
L L N + +Q S+L+ L+L++N
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,718,589
Number of Sequences: 62578
Number of extensions: 730635
Number of successful extensions: 2919
Number of sequences better than 100.0: 666
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 571
Number of HSP's that attempted gapping in prelim test: 2158
Number of HSP's gapped (non-prelim): 936
length of query: 766
length of database: 14,973,337
effective HSP length: 106
effective length of query: 660
effective length of database: 8,340,069
effective search space: 5504445540
effective search space used: 5504445540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)