Query 004233
Match_columns 766
No_of_seqs 444 out of 3228
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 19:51:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 2E-121 4E-126 1041.5 66.8 758 6-765 3-771 (868)
2 PLN02270 phospholipase D alpha 100.0 3E-107 7E-112 926.3 60.5 681 13-754 4-701 (808)
3 PLN02352 phospholipase D epsil 100.0 5E-102 1E-106 883.1 59.1 635 10-753 3-650 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 5E-91 1.1E-95 787.8 49.7 679 6-765 65-756 (887)
5 PLN02866 phospholipase D 100.0 6.1E-67 1.3E-71 605.2 43.5 467 203-758 321-915 (1068)
6 PRK12452 cardiolipin synthetas 100.0 9.5E-51 2.1E-55 462.2 30.8 336 203-753 131-466 (509)
7 PRK01642 cls cardiolipin synth 100.0 1.7E-49 3.7E-54 451.5 31.9 332 203-753 107-440 (483)
8 PRK11263 cardiolipin synthase 100.0 3.2E-48 6.9E-53 429.5 29.9 326 207-753 3-328 (411)
9 PHA02820 phospholipase-D-like 100.0 2.7E-38 5.8E-43 351.7 29.3 326 241-750 25-360 (424)
10 PRK09428 pssA phosphatidylseri 100.0 2.5E-38 5.5E-43 352.8 25.6 356 209-759 22-402 (451)
11 COG1502 Cls Phosphatidylserine 100.0 3.4E-36 7.3E-41 341.3 29.5 337 209-753 57-395 (438)
12 PHA03003 palmytilated EEV memb 100.0 7.1E-36 1.5E-40 328.6 25.7 317 241-753 30-349 (369)
13 cd04015 C2_plant_PLD C2 domain 99.9 5E-22 1.1E-26 193.2 15.5 157 12-180 2-158 (158)
14 PRK05443 polyphosphate kinase; 99.9 8.3E-21 1.8E-25 220.9 25.1 273 239-753 345-634 (691)
15 TIGR03705 poly_P_kin polyphosp 99.9 1E-20 2.3E-25 218.7 21.4 269 240-753 337-625 (672)
16 cd04016 C2_Tollip C2 domain pr 99.8 5.8E-19 1.3E-23 163.3 13.9 117 17-179 2-121 (121)
17 KOG3603 Predicted phospholipas 99.8 1.4E-17 3.1E-22 177.0 25.6 342 242-751 72-419 (456)
18 cd04042 C2A_MCTP_PRT C2 domain 99.8 9.8E-18 2.1E-22 155.9 14.9 120 18-181 1-121 (121)
19 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.2E-17 2.7E-22 155.5 14.2 114 19-175 2-125 (126)
20 cd08682 C2_Rab11-FIP_classI C2 99.7 2.1E-17 4.6E-22 154.8 13.0 116 19-177 1-125 (126)
21 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.5E-16 3.2E-21 149.1 15.6 120 17-182 4-125 (126)
22 cd04013 C2_SynGAP_like C2 doma 99.7 1.3E-16 2.9E-21 151.7 15.3 126 14-186 8-145 (146)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.1E-16 2.3E-21 148.9 13.4 119 19-179 2-121 (121)
24 cd08681 C2_fungal_Inn1p-like C 99.7 8.9E-17 1.9E-21 148.7 11.4 116 17-179 1-118 (118)
25 cd08678 C2_C21orf25-like C2 do 99.7 2.8E-16 6.2E-21 147.2 14.5 105 80-184 18-124 (126)
26 cd04019 C2C_MCTP_PRT_plant C2 99.7 2.8E-16 6E-21 151.4 13.8 121 19-182 2-134 (150)
27 cd04022 C2A_MCTP_PRT_plant C2 99.7 3.5E-16 7.5E-21 146.8 13.0 119 18-180 1-126 (127)
28 cd04044 C2A_Tricalbin-like C2 99.7 6E-16 1.3E-20 144.2 12.4 120 17-181 2-124 (124)
29 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.3E-15 2.9E-20 140.9 14.5 117 17-179 1-118 (119)
30 cd04036 C2_cPLA2 C2 domain pre 99.7 9.3E-16 2E-20 142.2 13.3 113 19-179 2-117 (119)
31 cd08378 C2B_MCTP_PRT_plant C2 99.7 7.5E-16 1.6E-20 143.2 12.6 97 80-179 17-119 (121)
32 cd08376 C2B_MCTP_PRT C2 domain 99.7 2E-15 4.3E-20 139.2 15.1 112 19-180 2-115 (116)
33 cd04014 C2_PKC_epsilon C2 doma 99.7 1.6E-15 3.5E-20 143.2 14.5 127 15-182 2-131 (132)
34 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 9.6E-16 2.1E-20 144.9 12.7 120 18-180 1-133 (133)
35 cd08381 C2B_PI3K_class_II C2 d 99.6 9.9E-16 2.2E-20 142.6 12.1 106 11-159 7-121 (122)
36 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 1.9E-15 4.1E-20 140.6 13.7 117 19-178 2-120 (121)
37 cd08677 C2A_Synaptotagmin-13 C 99.6 5E-16 1.1E-20 141.8 9.2 100 15-159 12-118 (118)
38 cd00138 PLDc Phospholipase D. 99.6 2E-15 4.3E-20 149.6 14.2 145 241-459 20-169 (176)
39 cd04028 C2B_RIM1alpha C2 domai 99.6 1.9E-15 4.2E-20 144.1 13.1 108 13-162 25-139 (146)
40 KOG1030 Predicted Ca2+-depende 99.6 5.6E-16 1.2E-20 146.8 9.2 97 14-153 3-100 (168)
41 cd04024 C2A_Synaptotagmin-like 99.6 2.5E-15 5.4E-20 140.9 13.4 120 17-179 1-128 (128)
42 cd08375 C2_Intersectin C2 doma 99.6 3.6E-15 7.9E-20 141.4 14.2 115 17-180 15-136 (136)
43 cd08391 C2A_C2C_Synaptotagmin_ 99.6 3E-15 6.5E-20 138.9 13.2 120 17-179 1-121 (121)
44 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 3E-15 6.4E-20 139.6 12.7 118 18-178 1-123 (123)
45 PRK12452 cardiolipin synthetas 99.6 1.3E-15 2.8E-20 174.4 11.4 153 212-460 329-481 (509)
46 cd08395 C2C_Munc13 C2 domain t 99.6 2.6E-15 5.7E-20 138.7 11.3 100 18-160 1-111 (120)
47 cd04046 C2_Calpain C2 domain p 99.6 1.7E-14 3.7E-19 135.1 15.8 122 16-182 2-124 (126)
48 cd08685 C2_RGS-like C2 domain 99.6 3.9E-15 8.5E-20 137.9 10.0 105 12-159 7-119 (119)
49 cd08373 C2A_Ferlin C2 domain f 99.6 1.6E-14 3.6E-19 135.4 14.3 103 80-185 15-121 (127)
50 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.1E-14 2.3E-19 136.0 11.9 103 15-159 14-122 (124)
51 cd08387 C2A_Synaptotagmin-8 C2 99.6 8.9E-15 1.9E-19 136.6 11.2 102 16-159 15-122 (124)
52 PHA02820 phospholipase-D-like 99.6 1.4E-14 2.9E-19 162.1 14.7 147 520-749 4-150 (424)
53 PHA03003 palmytilated EEV memb 99.6 9.7E-15 2.1E-19 161.2 12.8 143 243-460 217-364 (369)
54 cd08393 C2A_SLP-1_2 C2 domain 99.6 6.1E-15 1.3E-19 138.0 9.5 101 17-159 15-124 (125)
55 PRK13912 nuclease NucT; Provis 99.6 3.1E-14 6.8E-19 141.2 15.1 141 241-459 32-174 (177)
56 cd04029 C2A_SLP-4_5 C2 domain 99.6 1.2E-14 2.7E-19 135.9 11.3 103 15-159 13-124 (125)
57 cd08688 C2_KIAA0528-like C2 do 99.6 1.2E-14 2.7E-19 132.7 10.4 100 19-161 1-109 (110)
58 cd04043 C2_Munc13_fungal C2 do 99.6 5.6E-14 1.2E-18 131.5 14.7 115 18-182 2-123 (126)
59 cd04050 C2B_Synaptotagmin-like 99.6 2.4E-14 5.3E-19 129.6 11.8 97 19-160 2-101 (105)
60 cd04017 C2D_Ferlin C2 domain f 99.6 5.8E-14 1.2E-18 133.2 14.2 118 18-182 2-134 (135)
61 cd04045 C2C_Tricalbin-like C2 99.6 2.5E-14 5.5E-19 132.8 11.4 104 17-163 1-105 (120)
62 cd08392 C2A_SLP-3 C2 domain fi 99.6 1.8E-14 3.8E-19 135.2 10.3 102 16-159 14-127 (128)
63 cd08382 C2_Smurf-like C2 domai 99.6 3E-14 6.5E-19 132.9 11.7 116 19-177 2-122 (123)
64 cd04027 C2B_Munc13 C2 domain s 99.6 4E-14 8.7E-19 132.8 12.6 114 18-177 2-127 (127)
65 cd08690 C2_Freud-1 C2 domain f 99.5 7E-14 1.5E-18 134.5 14.3 98 80-180 25-137 (155)
66 cd08394 C2A_Munc13 C2 domain f 99.5 3.6E-14 7.8E-19 130.9 11.7 97 17-160 2-100 (127)
67 cd08680 C2_Kibra C2 domain fou 99.5 2.1E-14 4.5E-19 133.7 10.2 102 16-159 13-124 (124)
68 cd04010 C2B_RasA3 C2 domain se 99.5 3.5E-14 7.7E-19 136.2 11.6 83 80-162 19-123 (148)
69 cd04051 C2_SRC2_like C2 domain 99.5 2.5E-14 5.5E-19 133.7 10.4 113 18-175 1-125 (125)
70 cd04039 C2_PSD C2 domain prese 99.5 3.9E-14 8.4E-19 128.9 10.3 96 17-151 1-99 (108)
71 cd04030 C2C_KIAA1228 C2 domain 99.5 6.7E-14 1.5E-18 131.1 12.1 101 17-159 16-126 (127)
72 cd04041 C2A_fungal C2 domain f 99.5 2.4E-14 5.2E-19 131.0 8.9 98 17-159 1-106 (111)
73 cd04031 C2A_RIM1alpha C2 domai 99.5 5.6E-14 1.2E-18 131.2 11.3 101 16-159 15-124 (125)
74 cd08521 C2A_SLP C2 domain firs 99.5 5.7E-14 1.2E-18 130.8 10.6 103 15-159 12-123 (123)
75 cd08383 C2A_RasGAP C2 domain ( 99.5 1.7E-13 3.6E-18 126.4 13.5 96 80-179 18-117 (117)
76 cd04040 C2D_Tricalbin-like C2 99.5 1.3E-13 2.8E-18 126.9 12.5 111 19-174 1-113 (115)
77 cd08388 C2A_Synaptotagmin-4-11 99.5 1.2E-13 2.5E-18 129.8 12.1 102 16-159 15-126 (128)
78 cd08386 C2A_Synaptotagmin-7 C2 99.5 1E-13 2.2E-18 129.5 11.5 102 16-159 15-123 (125)
79 cd04018 C2C_Ferlin C2 domain t 99.5 8.7E-14 1.9E-18 133.8 11.2 116 18-162 1-126 (151)
80 cd08389 C2A_Synaptotagmin-14_1 99.5 2.3E-13 5E-18 127.1 12.4 100 17-159 16-122 (124)
81 cd04052 C2B_Tricalbin-like C2 99.5 1.9E-13 4E-18 125.2 11.4 100 77-182 10-111 (111)
82 cd04049 C2_putative_Elicitor-r 99.5 1.6E-13 3.4E-18 128.2 10.8 100 17-159 1-106 (124)
83 cd08407 C2B_Synaptotagmin-13 C 99.5 2.6E-14 5.6E-19 135.4 5.2 110 15-166 13-130 (138)
84 cd08390 C2A_Synaptotagmin-15-1 99.5 2.3E-13 5E-18 126.8 11.3 102 16-159 13-121 (123)
85 cd08692 C2B_Tac2-N C2 domain s 99.5 8.8E-14 1.9E-18 130.2 8.0 109 15-166 12-128 (135)
86 cd08406 C2B_Synaptotagmin-12 C 99.5 4E-14 8.7E-19 134.1 5.7 106 16-165 14-127 (136)
87 cd04011 C2B_Ferlin C2 domain s 99.5 3.5E-13 7.5E-18 123.3 11.1 81 80-161 21-110 (111)
88 KOG1028 Ca2+-dependent phospho 99.5 2.8E-13 6E-18 151.3 12.6 130 14-185 164-299 (421)
89 cd08384 C2B_Rabphilin_Doc2 C2 99.5 7E-14 1.5E-18 132.2 6.6 108 15-166 11-126 (133)
90 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 2.2E-13 4.8E-18 133.1 10.2 103 15-159 25-136 (162)
91 PRK01642 cls cardiolipin synth 99.5 2.8E-13 6E-18 155.0 12.5 153 211-460 302-455 (483)
92 cd04038 C2_ArfGAP C2 domain pr 99.5 4E-13 8.6E-18 128.6 11.2 90 17-150 2-92 (145)
93 PRK13912 nuclease NucT; Provis 99.5 1.3E-13 2.8E-18 136.8 7.9 128 560-753 32-160 (177)
94 cd08404 C2B_Synaptotagmin-4 C2 99.4 1.3E-13 2.7E-18 131.0 7.3 106 16-165 14-127 (136)
95 cd08676 C2A_Munc13-like C2 dom 99.4 3.5E-13 7.5E-18 129.8 10.2 98 16-159 27-153 (153)
96 cd08675 C2B_RasGAP C2 domain s 99.4 4.3E-13 9.2E-18 127.5 10.5 101 19-162 1-121 (137)
97 cd04032 C2_Perforin C2 domain 99.4 4.8E-13 1E-17 124.9 10.4 90 16-149 27-119 (127)
98 cd08402 C2B_Synaptotagmin-1 C2 99.4 8.8E-14 1.9E-18 132.1 5.5 108 15-166 13-128 (136)
99 cd04026 C2_PKC_alpha_gamma C2 99.4 7.8E-13 1.7E-17 124.7 11.1 109 11-162 7-122 (131)
100 KOG0696 Serine/threonine prote 99.4 7.8E-14 1.7E-18 147.4 4.3 106 14-162 177-289 (683)
101 cd00275 C2_PLC_like C2 domain 99.4 2E-12 4.4E-17 121.1 13.4 116 18-179 3-127 (128)
102 cd04021 C2_E3_ubiquitin_ligase 99.4 1.8E-12 3.8E-17 121.3 12.9 97 80-177 22-124 (125)
103 cd08405 C2B_Synaptotagmin-7 C2 99.4 2.5E-13 5.5E-18 128.9 6.9 108 15-166 13-128 (136)
104 cd08403 C2B_Synaptotagmin-3-5- 99.4 2.2E-13 4.7E-18 129.0 6.1 108 15-166 12-127 (134)
105 cd00276 C2B_Synaptotagmin C2 d 99.4 2.3E-13 5E-18 128.6 5.9 107 16-166 13-127 (134)
106 cd08691 C2_NEDL1-like C2 domai 99.4 3.7E-12 7.9E-17 120.7 13.5 115 18-177 2-136 (137)
107 cd04009 C2B_Munc13-like C2 dom 99.4 1.1E-12 2.4E-17 124.1 9.9 91 17-149 16-118 (133)
108 PF13091 PLDc_2: PLD-like doma 99.4 2.4E-12 5.2E-17 120.1 11.9 124 247-456 1-126 (126)
109 cd08410 C2B_Synaptotagmin-17 C 99.4 3.7E-13 8E-18 127.6 5.9 109 15-166 12-128 (135)
110 cd00138 PLDc Phospholipase D. 99.4 1.2E-12 2.5E-17 129.7 9.8 130 560-751 20-152 (176)
111 cd08409 C2B_Synaptotagmin-15 C 99.4 3.7E-13 8E-18 127.9 5.5 106 16-164 14-127 (137)
112 cd04037 C2E_Ferlin C2 domain f 99.4 1.8E-12 3.8E-17 121.1 9.7 117 19-182 2-121 (124)
113 cd08686 C2_ABR C2 domain in th 99.4 5.4E-12 1.2E-16 115.0 12.4 66 80-146 15-92 (118)
114 PLN03200 cellulose synthase-in 99.4 1.2E-12 2.7E-17 164.7 10.8 122 12-181 1975-2101(2102)
115 cd08408 C2B_Synaptotagmin-14_1 99.4 2.4E-12 5.1E-17 122.5 10.3 106 16-164 14-128 (138)
116 PRK11263 cardiolipin synthase 99.4 3.1E-12 6.6E-17 142.7 12.8 135 241-457 205-340 (411)
117 cd04048 C2A_Copine C2 domain f 99.4 3.7E-12 8E-17 118.2 10.6 80 80-159 21-112 (120)
118 cd04035 C2A_Rabphilin_Doc2 C2 99.3 6.2E-12 1.4E-16 117.2 11.6 101 16-158 14-122 (123)
119 PF13091 PLDc_2: PLD-like doma 99.3 2.9E-12 6.4E-17 119.5 8.5 115 566-753 1-115 (126)
120 KOG2059 Ras GTPase-activating 99.2 1.4E-11 3E-16 137.7 8.9 127 17-187 5-132 (800)
121 cd04047 C2B_Copine C2 domain s 99.2 8.7E-11 1.9E-15 107.1 9.4 69 80-149 21-100 (110)
122 PF00168 C2: C2 domain; Inter 99.1 1.5E-10 3.2E-15 99.5 8.0 81 19-141 1-85 (85)
123 KOG1011 Neurotransmitter relea 99.1 2.2E-10 4.7E-15 126.0 7.3 119 15-179 293-423 (1283)
124 COG5038 Ca2+-dependent lipid-b 99.0 1.3E-09 2.9E-14 128.5 11.7 127 17-187 436-564 (1227)
125 cd00030 C2 C2 domain. The C2 d 99.0 1.9E-09 4E-14 94.5 9.8 80 80-159 20-102 (102)
126 KOG3603 Predicted phospholipas 99.0 2.6E-09 5.7E-14 114.6 12.2 157 242-461 276-441 (456)
127 PLN02223 phosphoinositide phos 99.0 4.6E-09 9.9E-14 118.0 14.4 97 79-179 434-536 (537)
128 smart00239 C2 Protein kinase C 99.0 2.5E-09 5.5E-14 94.1 9.4 72 80-151 21-96 (101)
129 PRK05443 polyphosphate kinase; 99.0 2.9E-09 6.3E-14 125.0 11.7 119 564-753 351-481 (691)
130 PLN02952 phosphoinositide phos 98.9 7.9E-09 1.7E-13 118.5 14.0 96 80-179 497-598 (599)
131 cd08374 C2F_Ferlin C2 domain s 98.9 5.6E-09 1.2E-13 97.9 8.6 71 80-150 25-124 (133)
132 COG1502 Cls Phosphatidylserine 98.9 6.9E-09 1.5E-13 118.0 10.9 136 245-459 273-409 (438)
133 COG5038 Ca2+-dependent lipid-b 98.9 5.2E-09 1.1E-13 123.7 9.4 102 16-159 1039-1142(1227)
134 PLN02230 phosphoinositide phos 98.9 1.9E-08 4.2E-13 115.1 13.3 97 79-179 495-597 (598)
135 KOG1028 Ca2+-dependent phospho 98.8 2.7E-09 5.9E-14 119.5 5.8 105 16-164 297-409 (421)
136 PRK09428 pssA phosphatidylseri 98.8 2.3E-08 5E-13 112.7 13.2 140 560-752 34-179 (451)
137 PLN02222 phosphoinositide phos 98.8 4.7E-08 1E-12 111.8 13.8 97 79-179 478-580 (581)
138 KOG0169 Phosphoinositide-speci 98.8 2.5E-08 5.4E-13 114.1 11.4 98 80-181 641-745 (746)
139 PLN02228 Phosphoinositide phos 98.8 5.3E-08 1.2E-12 111.1 14.1 99 80-182 458-563 (567)
140 KOG1031 Predicted Ca2+-depende 98.7 3E-08 6.6E-13 108.3 9.8 120 15-179 1-135 (1169)
141 cd08689 C2_fungal_Pkc1p C2 dom 98.7 6.4E-08 1.4E-12 85.5 8.4 65 80-148 23-87 (109)
142 smart00155 PLDc Phospholipase 98.6 4.7E-08 1E-12 66.0 3.0 26 709-734 3-28 (28)
143 PF00614 PLDc: Phospholipase D 98.5 3E-08 6.5E-13 66.4 1.4 25 364-396 3-27 (28)
144 KOG1264 Phospholipase C [Lipid 98.4 1.3E-06 2.8E-11 99.3 10.6 102 80-185 1085-1194(1267)
145 KOG3964 Phosphatidylglycerolph 98.3 1.3E-05 2.9E-10 85.3 15.7 130 240-399 37-171 (469)
146 PF07894 DUF1669: Protein of u 98.3 4E-06 8.6E-11 87.5 11.5 154 210-456 117-278 (284)
147 PF13918 PLDc_3: PLD-like doma 98.3 1.7E-05 3.6E-10 77.4 14.9 60 561-634 82-147 (177)
148 KOG1328 Synaptic vesicle prote 98.3 2.4E-07 5.1E-12 104.1 2.0 91 16-148 946-1048(1103)
149 PF00614 PLDc: Phospholipase D 98.2 7.3E-07 1.6E-11 59.7 1.4 26 709-734 3-28 (28)
150 cd08683 C2_C2cd3 C2 domain fou 98.0 3.2E-06 6.9E-11 77.1 3.4 112 19-159 1-143 (143)
151 PF13090 PP_kinase_C: Polyphos 98.0 0.00058 1.2E-08 73.1 20.4 139 241-455 17-161 (352)
152 KOG1328 Synaptic vesicle prote 98.0 1.6E-06 3.4E-11 97.7 1.1 90 94-185 179-306 (1103)
153 TIGR03705 poly_P_kin polyphosp 97.9 6.7E-05 1.5E-09 88.2 11.9 118 564-752 342-471 (672)
154 smart00155 PLDc Phospholipase 97.8 1.4E-05 3.1E-10 53.9 2.8 24 364-395 3-26 (28)
155 KOG0905 Phosphoinositide 3-kin 97.8 1.5E-05 3.2E-10 94.3 4.1 108 10-159 1517-1633(1639)
156 KOG2059 Ras GTPase-activating 97.7 7E-05 1.5E-09 85.1 7.0 109 79-187 150-283 (800)
157 PF07894 DUF1669: Protein of u 97.5 0.0007 1.5E-08 70.9 11.3 133 559-750 132-265 (284)
158 PLN02866 phospholipase D 97.5 0.0005 1.1E-08 82.8 10.5 61 560-628 343-404 (1068)
159 KOG3837 Uncharacterized conser 97.4 9.1E-05 2E-09 79.4 3.5 98 80-180 388-503 (523)
160 COG0855 Ppk Polyphosphate kina 97.4 0.012 2.7E-07 67.2 19.9 95 239-376 349-448 (696)
161 KOG1013 Synaptic vesicle prote 97.3 5E-05 1.1E-09 79.5 -0.2 126 17-184 93-233 (362)
162 PF13918 PLDc_3: PLD-like doma 97.3 0.00056 1.2E-08 66.9 7.0 56 244-305 84-140 (177)
163 KOG1011 Neurotransmitter relea 97.3 0.00076 1.7E-08 75.6 8.2 80 80-159 1145-1235(1283)
164 KOG1013 Synaptic vesicle prote 97.2 0.00033 7.2E-09 73.5 4.8 100 16-159 232-339 (362)
165 KOG2060 Rab3 effector RIM1 and 97.0 0.00081 1.8E-08 71.8 5.2 109 16-165 268-383 (405)
166 PLN02352 phospholipase D epsil 97.0 0.0027 5.8E-08 75.0 9.9 62 241-305 452-519 (758)
167 PLN02964 phosphatidylserine de 97.0 0.001 2.3E-08 77.7 6.4 84 80-163 68-155 (644)
168 KOG1329 Phospholipase D1 [Lipi 96.9 0.003 6.4E-08 74.6 9.0 151 235-398 559-725 (887)
169 KOG1326 Membrane-associated pr 96.8 0.00072 1.6E-08 79.8 3.2 87 18-146 614-703 (1105)
170 PLN03008 Phospholipase D delta 96.7 0.0035 7.6E-08 74.3 7.4 71 232-305 556-633 (868)
171 COG3886 Predicted HKD family n 96.7 0.018 3.9E-07 56.4 10.8 141 241-458 38-179 (198)
172 cd08684 C2A_Tac2-N C2 domain f 96.6 0.0014 3.1E-08 55.9 2.8 70 87-158 30-102 (103)
173 KOG1327 Copine [Signal transdu 96.4 0.0046 1E-07 69.8 6.2 113 80-196 157-284 (529)
174 PF11495 Regulator_TrmB: Archa 96.0 0.032 6.9E-07 58.0 9.3 50 241-307 9-58 (233)
175 PLN02270 phospholipase D alpha 95.9 0.018 3.9E-07 68.5 7.7 65 241-305 498-569 (808)
176 KOG1265 Phospholipase C [Lipid 95.8 0.039 8.4E-07 64.8 9.6 102 13-166 699-810 (1189)
177 KOG1326 Membrane-associated pr 95.7 0.0022 4.7E-08 75.9 -0.7 101 16-160 205-316 (1105)
178 PF10358 NT-C2: N-terminal C2 95.4 0.39 8.5E-06 45.6 13.8 104 81-188 25-143 (143)
179 cd08398 C2_PI3K_class_I_alpha 94.8 0.57 1.2E-05 45.6 13.0 67 80-147 26-106 (158)
180 PF12416 DUF3668: Cep120 prote 94.6 0.38 8.2E-06 52.5 12.4 104 80-184 18-136 (340)
181 PF13090 PP_kinase_C: Polyphos 94.2 0.15 3.2E-06 55.0 8.0 94 606-753 51-151 (352)
182 cd08693 C2_PI3K_class_I_beta_d 91.7 0.9 2E-05 44.9 8.8 67 80-146 27-119 (173)
183 KOG1452 Predicted Rho GTPase-a 91.6 0.49 1.1E-05 49.8 6.9 125 8-180 42-167 (442)
184 PF15627 CEP76-C2: CEP76 C2 do 91.5 1.8 3.9E-05 41.8 10.3 101 82-183 36-153 (156)
185 cd08397 C2_PI3K_class_III C2 d 91.2 0.72 1.6E-05 44.9 7.4 69 79-147 29-107 (159)
186 COG0855 Ppk Polyphosphate kina 91.0 0.55 1.2E-05 54.3 7.3 94 606-753 385-485 (696)
187 COG3886 Predicted HKD family n 90.5 1.5 3.2E-05 43.4 8.7 52 560-629 38-89 (198)
188 cd08687 C2_PKN-like C2 domain 90.4 1.8 4E-05 37.6 8.2 84 80-179 9-92 (98)
189 cd08380 C2_PI3K_like C2 domain 89.3 1.5 3.3E-05 42.4 8.0 69 80-148 28-108 (156)
190 cd04012 C2A_PI3K_class_II C2 d 87.7 3.4 7.4E-05 40.7 9.3 68 80-147 29-119 (171)
191 PF00792 PI3K_C2: Phosphoinosi 86.5 2.7 5.8E-05 40.0 7.6 68 81-148 3-86 (142)
192 cd08399 C2_PI3K_class_I_gamma 84.1 8.4 0.00018 38.2 9.9 50 81-130 31-88 (178)
193 PF15625 CC2D2AN-C2: CC2D2A N- 83.2 4.2 9.2E-05 40.0 7.5 73 76-148 33-107 (168)
194 smart00142 PI3K_C2 Phosphoinos 81.8 8.9 0.00019 34.1 8.4 51 80-130 32-91 (100)
195 PF11495 Regulator_TrmB: Archa 81.6 4 8.7E-05 42.3 7.1 51 559-629 8-58 (233)
196 PF06087 Tyr-DNA_phospho: Tyro 80.8 0.87 1.9E-05 52.0 1.9 41 707-748 345-402 (443)
197 PF14429 DOCK-C2: C2 domain in 80.4 3.9 8.4E-05 40.8 6.3 55 92-146 59-120 (184)
198 cd08695 C2_Dock-B C2 domains f 80.3 9.3 0.0002 38.2 8.7 53 92-144 53-111 (189)
199 PF09565 RE_NgoFVII: NgoFVII r 79.9 17 0.00037 39.1 11.2 41 709-751 79-124 (296)
200 PF11618 DUF3250: Protein of u 74.2 22 0.00048 32.2 8.6 93 83-179 2-104 (107)
201 KOG3964 Phosphatidylglycerolph 73.2 5.3 0.00011 43.8 5.0 56 560-631 38-93 (469)
202 cd08697 C2_Dock-D C2 domains f 69.2 18 0.00039 36.1 7.5 39 92-130 56-97 (185)
203 cd08694 C2_Dock-A C2 domains f 66.9 9.1 0.0002 38.4 4.9 54 92-145 53-114 (196)
204 KOG1327 Copine [Signal transdu 64.9 6.7 0.00014 45.0 3.9 58 92-149 41-104 (529)
205 KOG0694 Serine/threonine prote 62.4 3.4 7.4E-05 48.4 1.0 96 80-184 28-125 (694)
206 cd08696 C2_Dock-C C2 domains f 59.2 19 0.00042 35.7 5.6 39 92-130 54-95 (179)
207 cd08679 C2_DOCK180_related C2 58.5 15 0.00032 36.4 4.8 52 95-146 55-115 (178)
208 PF06219 DUF1005: Protein of u 41.7 2.1E+02 0.0045 32.2 10.3 79 120-201 95-185 (460)
209 COG1489 SfsA DNA-binding prote 39.8 93 0.002 32.2 7.0 58 242-305 155-212 (235)
210 cd05137 RasGAP_CLA2_BUD2 CLA2/ 37.2 40 0.00086 37.9 4.3 50 136-187 1-51 (395)
211 PF09345 DUF1987: Domain of un 34.9 56 0.0012 29.2 4.0 21 285-306 63-83 (99)
212 TIGR00230 sfsA sugar fermentat 34.0 1.1E+02 0.0023 31.9 6.5 58 241-305 156-213 (232)
213 KOG4269 Rac GTPase-activating 33.1 26 0.00056 42.4 2.0 39 80-118 775-817 (1112)
214 KOG1467 Translation initiation 28.5 92 0.002 35.5 5.2 46 285-343 370-415 (556)
215 PTZ00447 apical membrane antig 27.2 4.2E+02 0.009 29.0 9.5 93 80-177 74-170 (508)
216 COG1378 Predicted transcriptio 27.0 1E+02 0.0022 32.3 5.1 48 241-305 119-166 (247)
217 COG1184 GCD2 Translation initi 25.7 1.4E+02 0.003 32.2 5.8 46 285-343 130-175 (301)
218 PF09565 RE_NgoFVII: NgoFVII r 24.2 5.4E+02 0.012 27.8 10.0 25 366-395 81-106 (296)
219 KOG1466 Translation initiation 23.5 1.2E+02 0.0026 31.8 4.6 75 248-343 110-186 (313)
220 PF07162 B9-C2: Ciliary basal 20.9 7.8E+02 0.017 23.9 11.0 63 80-142 17-99 (168)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=1.8e-121 Score=1041.54 Aligned_cols=758 Identities=73% Similarity=1.226 Sum_probs=658.0
Q ss_pred CCCCceeEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEE
Q 004233 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (766)
Q Consensus 6 ~~~~~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~ 85 (766)
++-+.++.+|||+|+++|.+|++||+||+++++++.||..+..|..+.++-.......+..+.++.-..++..++||||+
T Consensus 3 ~~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~ 82 (868)
T PLN03008 3 EKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVT 82 (868)
T ss_pred cccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEE
Confidence 44567889999999999999999999999999999999987777654332222222222222334444456678999999
Q ss_pred EEECCeeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCCC
Q 004233 86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (766)
Q Consensus 86 ~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~ 165 (766)
|.++++++.||++++++.||+|||+|.|.+.++...|.|+|||+|.+++++||.+.|||.++..|+.++.|++|+...++
T Consensus 83 I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~k 162 (868)
T PLN03008 83 VVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGK 162 (868)
T ss_pred EEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCC
Confidence 99998888899999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEecCCCCccccccCCCCCCCCcccccCCcccCCeeEEeeeccccCCCCCceecCCCCccCccchHH
Q 004233 166 PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE 245 (766)
Q Consensus 166 ~~~~~g~i~l~l~~~~~~~~p~f~~gi~~~~ef~~v~~s~~p~~~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~ 245 (766)
+.+..++|+++|+|.|....+.|..|++++++|.+|+.+.+|.+.|++|++|+|+|.++|..|.+.|++|+.|++..+|+
T Consensus 163 p~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwe 242 (868)
T PLN03008 163 PPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWE 242 (868)
T ss_pred CCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHH
Confidence 88889999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCcccc
Q 004233 246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMAT 325 (766)
Q Consensus 246 ~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~ 325 (766)
.++++|.+||+.|||+.|++.+.++|+|++.. +.+++.+|.++|++||++||+|.|||||+..|+...+++..|+|.+
T Consensus 243 di~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t 320 (868)
T PLN03008 243 DICYAISEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT 320 (868)
T ss_pred HHHHHHHhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence 99999999999999999999999999998752 2223489999999999999999999999999886667788999999
Q ss_pred CcHHHHhhhcCCCceEEecccCCCcccchhhhc-----------cccceecccceEEEEccCCCCCCcceEEEEccccCC
Q 004233 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (766)
Q Consensus 326 ~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~-----------~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~ 394 (766)
+++++.+++++.+|.|.++|+++.....++++. ...+.++||||++|||+++++++++.+|||||+|++
T Consensus 321 hdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc 400 (868)
T PLN03008 321 HDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLC 400 (868)
T ss_pred ccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceecc
Confidence 999999999999999999998877666666652 234679999999999998778899999999999999
Q ss_pred CcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhccccc
Q 004233 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474 (766)
Q Consensus 395 ~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~ 474 (766)
++|||++.|++++++++.+++||+||++.++...+++||||+|++|+||+|.+|+.+|.++|+.+++..++....+....
T Consensus 401 ~gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~ 480 (868)
T PLN03008 401 DGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTH 480 (868)
T ss_pred CCccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccc
Confidence 99999999999999999999999999876666678899999999999999999999999999999876433334455667
Q ss_pred ccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEEeeccCCCCCCCCCCccccccccccccc
Q 004233 475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK 554 (766)
Q Consensus 475 ~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~ 554 (766)
|.++.|+++.++.+++.|.....+......+...+........+++++.+|++||++.|++.++|..++....+++.|++
T Consensus 481 ~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk 560 (868)
T PLN03008 481 WQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAK 560 (868)
T ss_pred cccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccc
Confidence 88899999999888876643221111111111111111111245678899999999999999999998888889999999
Q ss_pred CccchhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 004233 555 DVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD 634 (766)
Q Consensus 555 ~~~~~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~ 634 (766)
+...|.||+.+|+++|++|||+||||||||+++++.|+.+...++.|+|+.+++++|+++++++++++|+||+|.+|+|+
T Consensus 561 ~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~ 640 (868)
T PLN03008 561 RLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGD 640 (868)
T ss_pred ccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred CCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeee
Q 004233 635 PKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAK 714 (766)
Q Consensus 635 ~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK 714 (766)
+.++++|.+++|+.++++++|..+.+.|++.|...++.+|++||++++++.........++..+..++..++.++|+|||
T Consensus 641 ~~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK 720 (868)
T PLN03008 641 PKSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAK 720 (868)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeee
Confidence 99999999999999999999999999999987766788999999999998654333334444455555566678999999
Q ss_pred EEEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcchhhhccCCCCCCC
Q 004233 715 GMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHDIW 765 (766)
Q Consensus 715 ~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~~~~~~~~~~~~~ 765 (766)
+|||||++++|||||||.|||.+++|+|+++.+++|...|+.....++|+|
T Consensus 721 ~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I 771 (868)
T PLN03008 721 GMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQV 771 (868)
T ss_pred EEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHH
Confidence 999999999999999999999988899999999999999987777777765
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=3.3e-107 Score=926.34 Aligned_cols=681 Identities=49% Similarity=0.860 Sum_probs=584.6
Q ss_pred EeeceEEEEEEEEeeCCCCCCCcchhhhccccccc-cCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe
Q 004233 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACD-VCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (766)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~ 91 (766)
.+|||+|+++|++|++||++++ ++.+++++.... .|+... +++||||+|.+++.
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~~------------------------~~~~~y~tv~~~~a 58 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGVGK------------------------GESQLYATIDLEKA 58 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccCCC------------------------CCCCceEEEEeCCc
Confidence 4899999999999999998755 556666554221 122111 24999999999999
Q ss_pred eeeeeccccCC-CCCeeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCCCCCCCC
Q 004233 92 TVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170 (766)
Q Consensus 92 ~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 170 (766)
+++||+++.+. .||.|+|+|.++++++...+.|+|+|.|.++.++||.+.||+.++..|+.+++|++++...+++.+..
T Consensus 59 ~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~ 138 (808)
T PLN02270 59 RVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGG 138 (808)
T ss_pred EEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCC
Confidence 99999999984 69999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceEEEEEEEEecCCCCccccccCCCCCCCCcccccCCcccCCeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHH
Q 004233 171 ASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHA 250 (766)
Q Consensus 171 g~i~l~l~~~~~~~~p~f~~gi~~~~ef~~v~~s~~p~~~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~ 250 (766)
..|+++++|+|+...+.|..|+++ .+|.+|+.+.+|.+.|++|++|+|+|.+++..|+|.|.+|+.|++..+|+.++++
T Consensus 139 ~~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~A 217 (808)
T PLN02270 139 SKIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDA 217 (808)
T ss_pred CEEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHH
Confidence 899999999999999999999976 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHH
Q 004233 251 ISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEET 330 (766)
Q Consensus 251 I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~ 330 (766)
|.+||++|+|.+|+|++.++|+|++..+.+. +..+|.++|++||++||+|+||+||+..+... .+..|+|.++++.+
T Consensus 218 I~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~-~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t 294 (808)
T PLN02270 218 ITNAKHLIYITGWSVYTEISLVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEET 294 (808)
T ss_pred HHhhhcEEEEEEeecCCCceEecCCCCCCCC-CcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHH
Confidence 9999999999999999999999875433333 24799999999999999999999999876542 34568888888899
Q ss_pred HhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCC---CCCCcceEEEEccccCCCcccCCCCCCCcc
Q 004233 331 KKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA---SGNNRKITAFIGGIDLCDGRYDTPEHRLFR 407 (766)
Q Consensus 331 ~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~---~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~ 407 (766)
++++++.+|++.++++.+.....++.+...+..++||||++|||+++ .+++++.+|||||+|++++||||+.|++++
T Consensus 295 ~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~ 374 (808)
T PLN02270 295 ENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFR 374 (808)
T ss_pred HHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccc
Confidence 99999999999999888765555555445567889999999999973 456889999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCC---CCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhcccccccccchhhcc
Q 004233 408 DLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIG 484 (766)
Q Consensus 408 ~~~~~~~~~~~n~~~~~---~~~~~~~~w~D~~v~v~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 484 (766)
++++.+.+||++|.|.+ +.+.++++|||+|++|+||+|.+|+.+|.++|+.+++.. .+..+.
T Consensus 375 ~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~---------------ll~~~~ 439 (808)
T PLN02270 375 TLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD---------------ILVQLR 439 (808)
T ss_pred cccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc---------------chhhhc
Confidence 99999999999987753 456789999999999999999999999999999987652 111222
Q ss_pred ccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEEeeccCCCCCCCCCCcccccccccccccCccchhhHHH
Q 004233 485 RISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQT 564 (766)
Q Consensus 485 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~si~~ 564 (766)
++.++..|.. |. ..+.+.+++.+|++||++.+...++|..++....++++++++...+.+|+.
T Consensus 440 ~~~~~~~P~~----------~~-------~~p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~ 502 (808)
T PLN02270 440 ELEDVIIPPS----------PV-------MFPDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQD 502 (808)
T ss_pred ccccccCCCC----------cc-------cCCCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHH
Confidence 2222222210 00 002345678999999999999999999888877788888877777899999
Q ss_pred HHHHHHHhccceEEEeccccccccCCCCcc----ccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCch
Q 004233 565 AYIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTV 640 (766)
Q Consensus 565 a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~----~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~ 640 (766)
+|+.+|++||++||||||||++.+..|+.+ +..++.|+|+.+++++|+++++++++++|+||+|.+|+|.++..++
T Consensus 503 aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~v 582 (808)
T PLN02270 503 AYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSV 582 (808)
T ss_pred HHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchH
Confidence 999999999999999999999999888644 5678999999999999999999999999999999999999998999
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCc-----cccccCCCCCccccccCCccceEEeeeE
Q 004233 641 QEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP-----KDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (766)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~HsK~ 715 (766)
+.+++|+.+++..+|..+.+.|+++|+..++.+|++||++++++... |...+.++.++..++..++.++|+|||+
T Consensus 583 q~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~ 662 (808)
T PLN02270 583 QAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKM 662 (808)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeE
Confidence 99999999999999999999999999866889999999999987542 1122233334444455556689999999
Q ss_pred EEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcchh
Q 004233 716 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTW 754 (766)
Q Consensus 716 ~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~~ 754 (766)
|||||++++|||||+|.|||.+++|+||+|..++|...+
T Consensus 663 ~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~ 701 (808)
T PLN02270 663 MIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLS 701 (808)
T ss_pred EEEcCCEEEEeccccccccccCCccchhhhcccCccccc
Confidence 999999999999999999999999999999988885543
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=5.1e-102 Score=883.10 Aligned_cols=635 Identities=45% Similarity=0.797 Sum_probs=529.8
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC
Q 004233 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (766)
Q Consensus 10 ~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~ 89 (766)
+|..+|||+|+++|.+|+ | ++.+|..+..|... .||||+|.++
T Consensus 3 ~~~~~lhg~l~~~i~~~~--~--------~~~~~~~~~~~~~~---------------------------~~~y~tv~~~ 45 (758)
T PLN02352 3 EKQKFFHGTLEATIFDAT--P--------YTPPFPFNCIFLNG---------------------------KATYVTIKIG 45 (758)
T ss_pred ccccccccceEEEEEEee--e--------hhhcccccccccCC---------------------------CCceEEEEeC
Confidence 455689999999999998 2 34455443333322 5999999999
Q ss_pred CeeeeeeccccCCCCCeeeeeEEEeecCCC-ceEEEEEEEcCCCCCceeEEEeccceeccCCce-eEEEEEccCCCCCCC
Q 004233 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWYDIIAPSGSPP 167 (766)
Q Consensus 90 ~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~ 167 (766)
+.+++|| .++.||.|+|+|.+++++.. ..+.|+|+| +.++||.+.||+.++..|+. +++|++++...+++.
T Consensus 46 ~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~ 118 (758)
T PLN02352 46 NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN 118 (758)
T ss_pred CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC
Confidence 9999999 66779999999999999998 689999988 58999999999999998866 999999999998886
Q ss_pred CCCceEEEEEEEEecCCCCccccccCCCCCCCCcccccCCcccCCeeEEeeeccccCCCCCceecCCCCccCccchHHHH
Q 004233 168 KPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDI 247 (766)
Q Consensus 168 ~~~g~i~l~l~~~~~~~~p~f~~gi~~~~ef~~v~~s~~p~~~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l 247 (766)
+. ..|+++++|+|+...+.|..|+.+ .+|.+|+.+.+|.+.|++|++|+|+|.+++..|.+.| .|...++|++|
T Consensus 119 ~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al 192 (758)
T PLN02352 119 PE-LKLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDV 192 (758)
T ss_pred CC-CEEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHH
Confidence 44 899999999999999999999977 6999999999999999999999999999999999987 45558889999
Q ss_pred HHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCc
Q 004233 248 CHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHD 327 (766)
Q Consensus 248 ~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~ 327 (766)
+++|.+||++|+|++|+|+++++|+|++..+.+.+.+.+|.++|++||++||+||||+||+.+|... .+..|++.+++
T Consensus 193 ~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~ 270 (758)
T PLN02352 193 YKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHD 270 (758)
T ss_pred HHHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccch
Confidence 9999999999999999999999999876432222234899999999999999999999999887653 34567778888
Q ss_pred HHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCC--CCCcceEEEEccccCCCcccCCCCCCC
Q 004233 328 EETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQAS--GNNRKITAFIGGIDLCDGRYDTPEHRL 405 (766)
Q Consensus 328 ~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~--~~~~~~~a~vGG~Ni~~~r~d~~~H~l 405 (766)
+...+++++.+|.|.+.|+... ..+..++||||++|||...+ +.+++.+|||||+|+|.+||||+.|++
T Consensus 271 ~~~~~~f~h~~V~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l 341 (758)
T PLN02352 271 EDAFAYFKHTKVVCKLCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSL 341 (758)
T ss_pred HHHHhhccCCceEEeecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCc
Confidence 8888899999999988776543 12456889999999999733 357778999999999999999999999
Q ss_pred ccCCCcc-ccCCCCCCCCC---CCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhcccccccccchh
Q 004233 406 FRDLDTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLI 481 (766)
Q Consensus 406 ~~~~~~~-~~~~~~n~~~~---~~~~~~~~~w~D~~v~v~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~ 481 (766)
++.+++. +++||+|+.|. .+...+|+||||+|++|+||+|.|+..+|.+||+++++.. .++
T Consensus 342 ~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~---------------~l~ 406 (758)
T PLN02352 342 FRTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS---------------VLV 406 (758)
T ss_pred ccccccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc---------------ccC
Confidence 9988765 46789888765 2456789999999999999999999999999999977542 111
Q ss_pred hccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEEeeccCCCCCCCCCCcccccccccccccCccchhh
Q 004233 482 KIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKS 561 (766)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~s 561 (766)
+.....++..+ |.. .....+++.+|++||++.+++.++|.. ...+.|
T Consensus 407 p~~~~~~~~~~------------p~~-------~~~~~~~w~VQv~RSid~~sa~~~P~~--------------~~~erS 453 (758)
T PLN02352 407 PTSSIRNLVHQ------------PGS-------SESNNRNWKVQVYRSIDHVSASHMPRN--------------LPVERS 453 (758)
T ss_pred CcccccccccC------------CCC-------CcccCCcccceEEEecCccccccCCCC--------------CchhhH
Confidence 11111111110 100 012346789999999998887777742 224799
Q ss_pred HHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchh
Q 004233 562 IQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQ 641 (766)
Q Consensus 562 i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~ 641 (766)
|+.+|+++|++|||+||||||||++.++.|+++...++.|+|+.+++++|+++++++++++|+||+|.+|+|.++..+++
T Consensus 454 Iq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq 533 (758)
T PLN02352 454 IHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQ 533 (758)
T ss_pred HHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHH
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999988999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCcc-----ccccCCCCCccccccCCccceEEeeeEE
Q 004233 642 EILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPK-----DVLANNGDKVSDSQKNQRFMIYVHAKGM 716 (766)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~HsK~~ 716 (766)
.+++|+++++..+|..+.+.|+++|....|.+||+|||+++++.... ...+.+.+.+..++..++..+|+|||+|
T Consensus 534 ~il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlM 613 (758)
T PLN02352 534 DILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCLANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLM 613 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecccccccccCCccccccCCCCCchhhhcccccceeEEEeeeEE
Confidence 99999999999999999999999997667999999999999975421 1111112211122223345799999999
Q ss_pred EEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 717 IVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 717 IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
||||++++|||||+|.|||.+++|+||++.+++|+..
T Consensus 614 IVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~ 650 (758)
T PLN02352 614 IVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNG 650 (758)
T ss_pred EEcCcEEEEcccccccccccCcccchhhhcccccccC
Confidence 9999999999999999999999999999999998754
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=5e-91 Score=787.76 Aligned_cols=679 Identities=43% Similarity=0.718 Sum_probs=561.4
Q ss_pred CCCCceeEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEE
Q 004233 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (766)
Q Consensus 6 ~~~~~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~ 85 (766)
.+....+.++||+|.++|..+..++++..+..+.+..+.....|.....+-.--...+|.+ +++.++-++-.++++|++
T Consensus 65 ~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~e~Ylt 143 (887)
T KOG1329|consen 65 SSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPR-SSLNSSMEKRKTLENYLT 143 (887)
T ss_pred CCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCcc-CCcccchhhhhhccchhe
Confidence 4466778999999999999999999988877766666554443333321100000111111 111111122244899999
Q ss_pred EEECCeeeeeeccccCC-CCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCC
Q 004233 86 VVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (766)
Q Consensus 86 ~~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~ 163 (766)
+.+......+|....+. .+|.|.+.|.+...+....+.+++.+.+..+ ...+|.+.++...+..+..+..|++++...
T Consensus 144 ~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d 223 (887)
T KOG1329|consen 144 VVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDND 223 (887)
T ss_pred eeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccC
Confidence 99999888899999887 8999999999999999888999999999999 899999999999999888999999998888
Q ss_pred CCCCCCCceEEEEEEEEecCCCCccccccCCCCCCCCcccccCCcccCCeeEEeeeccccCCCCCceecCCCC-ccCccc
Q 004233 164 GSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKPGT 242 (766)
Q Consensus 164 ~~~~~~~g~i~l~l~~~~~~~~p~f~~gi~~~~ef~~v~~s~~p~~~gn~v~~~~dg~~~~~~~~~~~~~~g~-~y~~~~ 242 (766)
+++......+.+++.|.+......+..+..+.+++.+++.+.++...|..+++|.|.|+.++..|-+.+++|+ .|....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~ 303 (887)
T KOG1329|consen 224 GKPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKK 303 (887)
T ss_pred CccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhh
Confidence 8776666778899999999999999999999899999999999999999999999999999999999999998 666688
Q ss_pred hHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCc
Q 004233 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGV 322 (766)
Q Consensus 243 ~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~ 322 (766)
+|+.+.+||.+|++.|+|+.|++.|.++|+|+...+ ..-+|.++|+++|++||+|+||+||+..+...
T Consensus 304 ~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~-------- 371 (887)
T KOG1329|consen 304 YWEDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG-------- 371 (887)
T ss_pred HHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc--------
Confidence 999999999999999999999999999999987532 23799999999999999999999999987542
Q ss_pred cccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCCCC
Q 004233 323 MATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPE 402 (766)
Q Consensus 323 ~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~ 402 (766)
..++..+....+.+.+|+|..+|+.+.+.. ...|.||+|++|||.+ ++||||+++|+|||||+.
T Consensus 372 i~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~e 435 (887)
T KOG1329|consen 372 INSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPE 435 (887)
T ss_pred cCchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCcc
Confidence 224556778888999999999998765321 2478999999999999 999999999999999999
Q ss_pred CCCccCCCccccCCCCCCCCC-----CCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhcccccccc
Q 004233 403 HRLFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRD 477 (766)
Q Consensus 403 H~l~~~~~~~~~~~~~n~~~~-----~~~~~~~~~w~D~~v~v~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~ 477 (766)
|+|+|.+++++++||+||.+. ++...||+||||+||++.||+|+|+.++|.||||++...+. .+ +
T Consensus 436 H~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~---------~~-~ 505 (887)
T KOG1329|consen 436 HPLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK---------PY-D 505 (887)
T ss_pred ccccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC---------CC-C
Confidence 999999999999999999986 57788999999999999999999999999999999876420 00 1
Q ss_pred cchhhccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEEeeccCCCCCCCCCCcccccccccccccCcc
Q 004233 478 DYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVV 557 (766)
Q Consensus 478 ~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 557 (766)
+.+. ++.|.... ..|+ ...+.+++.+.+|+++|++.|.+.+ ++....+++.+++...
T Consensus 506 ~~~p-------~L~p~~~~------~~~~------~~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~ 562 (887)
T KOG1329|consen 506 DSLP-------LLLPISDI------TGPS------EPNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINE 562 (887)
T ss_pred ccce-------eecChhhh------cCCC------CccccccccccccceeeccCCcccc----hHHhhhhcccccCCCc
Confidence 1111 11111100 0111 0123456778899999998886544 4455667888888888
Q ss_pred chhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCC--CC--
Q 004233 558 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EG-- 633 (766)
Q Consensus 558 ~~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~--~g-- 633 (766)
.|+||++||+++|++||||||||||||++++..|.. ..|.+..+++++|++|.++++.++|+||+|.+| +|
T Consensus 563 ~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~ 637 (887)
T KOG1329|consen 563 IEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDD 637 (887)
T ss_pred hHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCC
Confidence 899999999999999999999999999998776643 478889999999999999999999999999999 78
Q ss_pred CCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccC-CCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEe
Q 004233 634 DPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVD-AHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVH 712 (766)
Q Consensus 634 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~-v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 712 (766)
.+...++|++++|++++++++|.+++..|++.|++ .++-+|+.|+++++++.. +++..++.+|+|
T Consensus 638 ~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~--------------~~~~~~emIYVH 703 (887)
T KOG1329|consen 638 TPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQ--------------AQRLRREMIYVH 703 (887)
T ss_pred CCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccc--------------cccceEEEEEEe
Confidence 67778999999999999999999999999999986 445556666666665420 134456899999
Q ss_pred eeEEEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcchhhhccCCCCCCC
Q 004233 713 AKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHDIW 765 (766)
Q Consensus 713 sK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~~~~~~~~~~~~~ 765 (766)
||+|||||++++|||||+|.|||.|++|+|++|+++||++.|+..++.|.|.|
T Consensus 704 sK~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~ 756 (887)
T KOG1329|consen 704 SKLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFI 756 (887)
T ss_pred eeeEEecCCEEEEeecccchhhccCCccceeEEEEecccchhhccCCcchhHH
Confidence 99999999999999999999999999999999999999999999999888765
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=6.1e-67 Score=605.18 Aligned_cols=467 Identities=31% Similarity=0.495 Sum_probs=338.3
Q ss_pred cccCCcc----cCCeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCC
Q 004233 203 NAYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRP 278 (766)
Q Consensus 203 ~s~~p~~----~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~ 278 (766)
.+++|.+ .||.+++|.|| .++|.+|+++|++||++|+|++|+|+|.+++.|+..
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~-- 378 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH-- 378 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC--
Confidence 3566666 68999999998 889999999999999999999999999999998532
Q ss_pred CCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhh--cCCCceEEecccCCCcccchhh
Q 004233 279 LPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFK 356 (766)
Q Consensus 279 ~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l--~~~gi~v~~~~~~~~~~~~~~~ 356 (766)
.+.+.+|.++|++||++||+||||+||.+++... .. +....+.| .++||+|..+|....
T Consensus 379 --D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~--~~--------S~~~k~~L~~lh~gI~V~r~P~~~~------- 439 (1068)
T PLN02866 379 --DHESSRLDSLLEAKAKQGVQIYILLYKEVALALK--IN--------SVYSKRRLLGIHENVKVLRYPDHFS------- 439 (1068)
T ss_pred --CchHHHHHHHHHHHHHCCCEEEEEEECccccccc--cC--------chhhHHHHHHhCCCeEEEecCcccc-------
Confidence 1224899999999999999999999999864221 00 01111222 367999865443210
Q ss_pred hccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccc-cCCCCCCCCC------------
Q 004233 357 QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVF-KDDFHNPTYP------------ 423 (766)
Q Consensus 357 ~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~~~~~~~-~~~~~n~~~~------------ 423 (766)
....++|||||++|||++ +||+||+|||.+||||+.|.+.|.....+ ++||.|++..
T Consensus 440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ 509 (1068)
T PLN02866 440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE 509 (1068)
T ss_pred --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence 123688999999999999 99999999999999999999988655555 5689888643
Q ss_pred -CCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhccc---------ccccc----------------
Q 004233 424 -IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRV---------SHWRD---------------- 477 (766)
Q Consensus 424 -~~~~~~~~~w~D~~v~v~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~---------~~~~~---------------- 477 (766)
++...+++||||++++|+||+|.+|+++|.+|||+++..+.......++ +.+..
T Consensus 510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~ 589 (1068)
T PLN02866 510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQ 589 (1068)
T ss_pred cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCcccccccccccccccccccccccccccccccccccccc
Confidence 2355677899999999999999999999999999987653100000000 00000
Q ss_pred ------cch---hhccccccccCcccccc------------CCCccccCC---CC----------cc-------c-----
Q 004233 478 ------DYL---IKIGRISWILSPELSLK------------TNGTTIVPR---DD----------NV-------V----- 511 (766)
Q Consensus 478 ------~~l---~~~~~~~~~~~p~~~~~------------~~~~~~~p~---~~----------~~-------~----- 511 (766)
+.. .....++.++ |....+ ...+..+++ .. +. .
T Consensus 590 ~~~~~~~~~~~~~~~~~~P~ll-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 668 (1068)
T PLN02866 590 KGIARQDSFSSRSSLQDIPLLL-PQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLS 668 (1068)
T ss_pred ccccccccccccccccccccCC-CCCcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0000111111 110000 000000000 00 00 0
Q ss_pred -------------------------------ccccCCCCCceEeEEEeeccCCCCCCCCCCcccccccccccccCccchh
Q 004233 512 -------------------------------RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDK 560 (766)
Q Consensus 512 -------------------------------~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 560 (766)
........+++.+|++||...|+... + ..|.
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~-~-----------------~~E~ 730 (1068)
T PLN02866 669 VKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGT-S-----------------QVEE 730 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCC-C-----------------chHH
Confidence 00001123567899999976665321 1 2488
Q ss_pred hHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCC--CCC---
Q 004233 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDP--- 635 (766)
Q Consensus 561 si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~--g~~--- 635 (766)
||++||+++|++|+|+||||||||++.... ...+.|+|+.+++.+|++|+++++.++|+||+|.+|+ |..
T Consensus 731 SI~~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~ 805 (1068)
T PLN02866 731 SIHAAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDG 805 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCc
Confidence 999999999999999999999999986432 1356899999999999999999999999999999996 332
Q ss_pred CCCchhhhhHhhHHHHHHHHHHHHHHHHHc-ccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeee
Q 004233 636 KTNTVQEILFWQSQTMQMMYSVVAQELREM-QVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAK 714 (766)
Q Consensus 636 d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK 714 (766)
...+++.+++|+.++++.++.++++.|+++ |. .+.+||+||++++++.. .+|.+. ..+.+|+|||
T Consensus 806 ~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~--~p~dYisf~~LRn~~~l------~~~~~~------vteqIYVHsK 871 (1068)
T PLN02866 806 GAASVRAIMHWQYRTICRGKNSILHNLYDLLGP--KTHDYISFYGLRAYGRL------FEGGPL------ATSQIYVHSK 871 (1068)
T ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHeEeeecccccccc------cCCCcc------cceeeEEEee
Confidence 335789999999999999999999999885 43 68899999999987643 112221 2356999999
Q ss_pred EEEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcchhhhcc
Q 004233 715 GMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758 (766)
Q Consensus 715 ~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~~~~~~ 758 (766)
+|||||++++|||||+|.|||.+++|+|+++++.|++..+..-.
T Consensus 872 ~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~ 915 (1068)
T PLN02866 872 IMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMN 915 (1068)
T ss_pred EEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccC
Confidence 99999999999999999999999999999999999987654433
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=9.5e-51 Score=462.17 Aligned_cols=336 Identities=24% Similarity=0.334 Sum_probs=251.8
Q ss_pred cccCCcccCCeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCC
Q 004233 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (766)
Q Consensus 203 ~s~~p~~~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g 282 (766)
.+..|.+.||.+++|.|| +++|++++++|++|+++|+|++|+|.+| ..|
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~d-----------~~g 179 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKSD-----------EIG 179 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeCC-----------cHH
Confidence 356888999999999998 8999999999999999999999999886 233
Q ss_pred CcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccc
Q 004233 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGT 362 (766)
Q Consensus 283 ~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~ 362 (766)
..+.++|.+||+|||+||||+ |++||... ...+.+.|+++||++..+.+... .++ ..+.
T Consensus 180 --~~i~~aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~---~~~---~~~~ 238 (509)
T PRK12452 180 --TKVRDALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFS---AWL---LETV 238 (509)
T ss_pred --HHHHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCccc---ccc---cccc
Confidence 899999999999999999995 99998542 24677889999999986532211 111 2356
Q ss_pred eecccceEEEEccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeC
Q 004233 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG 442 (766)
Q Consensus 363 ~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~G 442 (766)
|+|||||++||||+ +||+||+|+++ +|.+.. .+.++|||++++++|
T Consensus 239 n~RnHRKi~VIDg~--------ia~~GG~Ni~d-~y~~~~-------------------------~~~~~WrD~~~~i~G 284 (509)
T PRK12452 239 NYRNHRKIVIVDGE--------IGFTGGLNVGD-EYLGRS-------------------------KKFPVWRDSHLKVEG 284 (509)
T ss_pred cCCCCCeEEEEcCC--------EEEeCCcccch-hhcCCC-------------------------CCCCCceEEEEEEEC
Confidence 89999999999999 99999999999 453211 124689999999999
Q ss_pred hHHHHHHHHHHHHHhhhccchhhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCce
Q 004233 443 PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENW 522 (766)
Q Consensus 443 pav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 522 (766)
|+|.+++..|.++|+.+++... ...|.. . ..+ .+.|.. ....+..
T Consensus 285 p~V~~l~~~F~~dW~~~~~~~~-------~~~~~~-----~------~~~---------~~~~~~--------~~~~~~~ 329 (509)
T PRK12452 285 KALYKLQAIFLEDWLYASSGLN-------TYSWDP-----F------MNR---------QYFPGK--------EISNAEG 329 (509)
T ss_pred HHHHHHHHHHHHHHHHhhCccc-------cccccc-----c------cch---------hcCCCc--------cccCCCe
Confidence 9999999999999998754310 000000 0 000 011110 0002334
Q ss_pred EeEEEeeccCCCCCCCCCCcccccccccccccCccchhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCc
Q 004233 523 HVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNL 602 (766)
Q Consensus 523 ~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~ 602 (766)
.+|++.+ | |+.. +.++..+|+++|.+||++|||++|||++ +.
T Consensus 330 ~~q~~~s---g-----p~~~----------------~~~i~~~~l~~I~~A~~~I~I~tpYf~p------d~-------- 371 (509)
T PRK12452 330 AVQIVAS---G-----PSSD----------------DKSIRNTLLAVMGSAKKSIWIATPYFIP------DQ-------- 371 (509)
T ss_pred EEEEEeC---C-----CCch----------------hHHHHHHHHHHHHHhhhEEEEECCccCC------CH--------
Confidence 6888875 3 3321 4689999999999999999999999994 33
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCC
Q 004233 603 IPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGK 682 (766)
Q Consensus 603 i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~ 682 (766)
.+..+|..|++ |||+|+||+|. .+|. .++.++.+++ ++.|+++|++| |.+
T Consensus 372 ---~l~~aL~~Aa~--rGV~Vrii~p~----~~D~----~~~~~a~~~~-------~~~L~~aGv~I--------~~y-- 421 (509)
T PRK12452 372 ---ETLTLLRLSAI--SGIDVRILYPG----KSDS----IISDQASQSY-------FTPLLKAGASI--------YSY-- 421 (509)
T ss_pred ---HHHHHHHHHHH--cCCEEEEEcCC----CCCh----HHHHHHHHHH-------HHHHHHcCCEE--------EEe--
Confidence 33444555544 66999999996 3332 2344555443 78899999975 322
Q ss_pred ccCCccccccCCCCCccccccCCccceEEeeeEEEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 683 REEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
.++++|+|++||||++++|||+|||.||+. .|.|+++++++++++
T Consensus 422 ------------------------~~~~lHaK~~ivD~~~a~vGS~Nld~RS~~--~n~E~~~~i~~~~~~ 466 (509)
T PRK12452 422 ------------------------KDGFMHAKIVLVDDKIATIGTANMDVRSFE--LNYEIISVLYESETV 466 (509)
T ss_pred ------------------------cCCCeeeeEEEECCCEEEEeCcccCHhHhh--hhhhccEEEECHHHH
Confidence 145899999999999999999999999998 569999999999874
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.7e-49 Score=451.51 Aligned_cols=332 Identities=24% Similarity=0.361 Sum_probs=250.2
Q ss_pred cccCCcccCCeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCC
Q 004233 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (766)
Q Consensus 203 ~s~~p~~~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g 282 (766)
....|.+.||+++++.+| +++|++|+++|++|+++|+|++|+|.+| ..|
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~d-----------~~g 155 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRPD-----------GLG 155 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEccC-----------CcH
Confidence 456788999999999998 8999999999999999999999999875 233
Q ss_pred CcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEec-ccCCCcccchhhhcccc
Q 004233 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA-PRYASSKLSYFKQQIVG 361 (766)
Q Consensus 283 ~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~-~~~~~~~~~~~~~~~~~ 361 (766)
.++.++|.+||+|||+||||+ |++||... ..+...+.|+++||++..+ |.... .++ ..+
T Consensus 156 --~~i~~aL~~aa~rGV~VriL~-D~~Gs~~~-----------~~~~~~~~L~~~Gi~v~~~~p~~~~---~~~---~~~ 215 (483)
T PRK01642 156 --DQVAEALIAAAKRGVRVRLLY-DSIGSFAF-----------FRSPYPEELRNAGVEVVEFLKVNLG---RVF---RRR 215 (483)
T ss_pred --HHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----------CcHHHHHHHHHCCCEEEEecCCCcc---ccc---ccc
Confidence 899999999999999999995 99998642 1223677899999999865 32111 111 235
Q ss_pred ceecccceEEEEccCCCCCCcceEEEEccccCCC-cccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEE
Q 004233 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD-GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL 440 (766)
Q Consensus 362 ~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~-~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v 440 (766)
.|+|||||++||||+ +||+||+|+++ +++.. ....++|+|+++++
T Consensus 216 ~n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~--------------------------~~~~~~w~D~~~~i 261 (483)
T PRK01642 216 LDLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ--------------------------DPGVGQWRDTHVRI 261 (483)
T ss_pred cccccCceEEEEcCC--------EEEeCCcccCCHHHhCC--------------------------CCCCCCcEEEEEEE
Confidence 688999999999999 99999999999 44421 11236899999999
Q ss_pred eChHHHHHHHHHHHHHhhhccchhhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCC
Q 004233 441 DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPE 520 (766)
Q Consensus 441 ~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 520 (766)
+||+|.+++..|.++|+.+++... ... .|.. ..++ ....+
T Consensus 262 ~Gp~v~~l~~~F~~dW~~~~~~~~---------------~~~--------~~~~--------~~~~---------~~~~~ 301 (483)
T PRK01642 262 EGPVVTALQLIFAEDWEWETGERI---------------LPP--------PPDV--------LIMP---------FEEAS 301 (483)
T ss_pred EcHHHHHHHHHHHHHHHHHhCccc---------------CCC--------Cccc--------ccCC---------ccCCC
Confidence 999999999999999998654310 000 0000 0000 00112
Q ss_pred ceEeEEEeeccCCCCCCCCCCcccccccccccccCccchhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCC
Q 004233 521 NWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGAD 600 (766)
Q Consensus 521 ~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~ 600 (766)
...+|++.+ | |..+ +..+.++++++|.+||++|||++|||+++ .
T Consensus 302 ~~~~qi~~s---g-----P~~~----------------~~~~~~~~~~~I~~A~~~I~I~tpYfip~------~------ 345 (483)
T PRK01642 302 GHTVQVIAS---G-----PGDP----------------EETIHQFLLTAIYSARERLWITTPYFVPD------E------ 345 (483)
T ss_pred CceEEEEeC---C-----CCCh----------------hhHHHHHHHHHHHHhccEEEEEcCCcCCC------H------
Confidence 346888865 3 4322 35788999999999999999999999943 3
Q ss_pred CccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeec
Q 004233 601 NLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCL 680 (766)
Q Consensus 601 ~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~ 680 (766)
.+..+|..|++ |||+|+||+|.. +|. .++.++++++ ++.|.++|+++ |.+
T Consensus 346 -----~i~~aL~~Aa~--rGV~Vril~p~~----~d~----~~~~~~~~~~-------~~~L~~~Gv~I--------~~y 395 (483)
T PRK01642 346 -----DLLAALKTAAL--RGVDVRIIIPSK----NDS----LLVFWASRAF-------FTELLEAGVKI--------YRY 395 (483)
T ss_pred -----HHHHHHHHHHH--cCCEEEEEeCCC----CCc----HHHHHHHHHH-------HHHHHHcCCEE--------EEe
Confidence 34445555544 569999999963 232 3445655553 67888999875 322
Q ss_pred CCccCCccccccCCCCCccccccCCccceEEeeeEEEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 681 GKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
.++++|+|+|||||++++|||+|||.||+. .|.|++++++|++++
T Consensus 396 --------------------------~~~~~HaK~~ivD~~~~~vGS~N~d~rS~~--~N~E~~~~i~d~~~~ 440 (483)
T PRK01642 396 --------------------------EGGLLHTKSVLVDDELALVGTVNLDMRSFW--LNFEITLVIDDTGFA 440 (483)
T ss_pred --------------------------CCCceEeEEEEECCCEEEeeCCcCCHhHHh--hhhcceEEEECHHHH
Confidence 135899999999999999999999999998 569999999999874
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=3.2e-48 Score=429.52 Aligned_cols=326 Identities=20% Similarity=0.299 Sum_probs=241.5
Q ss_pred CcccCCeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCc
Q 004233 207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT 286 (766)
Q Consensus 207 p~~~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~ 286 (766)
+++.||++++|.|| +++|.+++++|++|+++|+|++|+|.+| ..| ..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~d-----------~~g--~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFED-----------KVG--KQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEecC-----------chH--HH
Confidence 67889999999998 8999999999999999999999999876 223 79
Q ss_pred HHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecc
Q 004233 287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTH 366 (766)
Q Consensus 287 l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~ 366 (766)
|.++|++||+|||+||||+ |+.|+... +..+.+.|.++||+++.+.+.+. ++.. ....+.|+
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~----~~~~-~~~~~~R~ 111 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR----LLGM-RTNLFRRM 111 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc----cccc-ccccccCC
Confidence 9999999999999999996 99987542 24677889999999986532211 1100 11223589
Q ss_pred cceEEEEccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHH
Q 004233 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY 446 (766)
Q Consensus 367 H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpav~ 446 (766)
|+|++|||++ +||+||+|++++++.. .+...|+|++++|+||+|.
T Consensus 112 HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V~ 156 (411)
T PRK11263 112 HRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVVA 156 (411)
T ss_pred cceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHHH
Confidence 9999999999 9999999999844421 1224699999999999999
Q ss_pred HHHHHHHHHHhhhccchhhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEE
Q 004233 447 DVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQI 526 (766)
Q Consensus 447 dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~ 526 (766)
+++..|.+.|....... ..|... +. .+. ....+...+|+
T Consensus 157 ~l~~~f~~~w~~~~~~~---------~~~~~~-------------~~----------~~~---------~~~~g~~~~~~ 195 (411)
T PRK11263 157 DIHQFELEALPGQSAAR---------RWWRRH-------------HR----------AEE---------NRQPGEAQALL 195 (411)
T ss_pred HHHHHHHHHHhhcccch---------hhhccc-------------cc----------Ccc---------cCCCCCeEEEE
Confidence 99999999996532110 001000 00 000 01123445677
Q ss_pred EeeccCCCCCCCCCCcccccccccccccCccchhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHH
Q 004233 527 FRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME 606 (766)
Q Consensus 527 ~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~ 606 (766)
+.+ + |+. ....|...|+.+|.+|+++|+|+||||+|. . .
T Consensus 196 v~~---~-----p~~----------------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~------~-----------~ 234 (411)
T PRK11263 196 VWR---D-----NEE----------------HRDDIERHYLKALRQARREVIIANAYFFPG------Y-----------R 234 (411)
T ss_pred EEC---C-----Ccc----------------hHHHHHHHHHHHHHHhceEEEEEecCcCCC------H-----------H
Confidence 653 2 221 135789999999999999999999999953 2 3
Q ss_pred HHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCC
Q 004233 607 LALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA 686 (766)
Q Consensus 607 ~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~ 686 (766)
+..+|..|++ |||+|+||+|. .+|. .++.++++. ++..|+++|++| |.+
T Consensus 235 l~~aL~~Aa~--RGV~V~ii~~~----~~d~----~~~~~a~~~-------~~~~Ll~~Gv~I--------~~y------ 283 (411)
T PRK11263 235 LLRALRNAAR--RGVRVRLILQG----EPDM----PIVRVGARL-------LYNYLLKGGVQI--------YEY------ 283 (411)
T ss_pred HHHHHHHHHH--CCCEEEEEeCC----CCCc----HHHHHHHHH-------HHHHHHHCCCEE--------EEe------
Confidence 4445555544 66999999995 3332 344555554 378899999975 332
Q ss_pred ccccccCCCCCccccccCCccceEEeeeEEEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 687 PKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
. ..++|+|+|||||++++|||+|||.||+. .|+|++++|+||+++
T Consensus 284 ------------------~--~~~lHaK~~viD~~~~~vGS~Nld~rS~~--lN~E~~~~i~d~~~a 328 (411)
T PRK11263 284 ------------------C--RRPLHGKVALMDDHWATVGSSNLDPLSLS--LNLEANLIIRDRAFN 328 (411)
T ss_pred ------------------c--CCCceeEEEEECCCEEEEeCCcCCHHHhh--hhhhcCEEEeCHHHH
Confidence 1 34899999999999999999999999998 569999999999985
No 9
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=351.74 Aligned_cols=326 Identities=15% Similarity=0.193 Sum_probs=214.8
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~ 320 (766)
..+|+.+.++|.+|+++|+|++|+|.++...- .+.| .+|.++|++||+|||+||||+ |..+..
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~~------~~~G--~~i~~aL~~aA~rGV~VRIL~-d~~~~~-------- 87 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSLSDEVG------TNFG--TMILNEIIQLPKRGVRVRIAV-NKSNKP-------- 87 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEecCcccc------chhH--HHHHHHHHHHHHCCCEEEEEE-CCCCCc--------
Confidence 56799999999999999999999998531100 0112 789999999999999999996 865321
Q ss_pred CccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCC
Q 004233 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (766)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (766)
....+.|.++||+++.++... ..+.++|+|++|||++ ++|+||+|+++ |+.+
T Consensus 88 -------~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~ 139 (424)
T PHA02820 88 -------LKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT 139 (424)
T ss_pred -------hhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence 134567888999998653211 1235699999999999 99999999988 5532
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEE--eChHHHHHHHHHHHHHhhhccchhhhhhhccccccccc
Q 004233 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (766)
Q Consensus 401 ~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v--~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~ 478 (766)
..+|+++++ +||+|.+|++.|..+|+..+.... ..|...
T Consensus 140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~--------~~~~~~ 180 (424)
T PHA02820 140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLP--------YNWKNF 180 (424)
T ss_pred -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCC--------Cccccc
Confidence 234777777 799999999999999998653210 011100
Q ss_pred chhhccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEEeeccCCCCCCCCCCcccccccccccccCccc
Q 004233 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (766)
Q Consensus 479 ~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 558 (766)
+ |. .++...+.. ....+....+++.+ + |.... +. .
T Consensus 181 -------~-----~~---------~~~~~~p~~----~~~~~~~~~~~~ss---s-----P~~~~---------~~---~ 215 (424)
T PHA02820 181 -------Y-----PL---------YYNTDHPLS----LNVSGVPHSVFIAS---A-----PQQLC---------TM---E 215 (424)
T ss_pred -------c-----cc---------ccccCCCcc----cccCCccceEEEeC---C-----Chhhc---------CC---C
Confidence 0 00 000000000 00011112334332 2 21100 00 0
Q ss_pred hhhHHHHHHHHHHhccceEEEecccccccc-------CCCCccccCCCCCccHHHHHHHHHH-HHHcCCCeEEEEEecCC
Q 004233 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSS-------YAWPSYKNAGADNLIPMELALKIAS-KIRANERFAVYVIIPMW 630 (766)
Q Consensus 559 ~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~-------~~~p~~~~~~~~~~i~~~~a~~la~-~~~~grgV~V~Illp~~ 630 (766)
......+|+.+|.+||++|||++|||+|.. .+|| .+..+|.+ |+ .|||+|+||+|.+
T Consensus 216 r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~-------------~i~~AL~~AA~--~RGV~VriLvp~~ 280 (424)
T PHA02820 216 RTNDLTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWP-------------YIEDELRRAAI--DRKVSVKLLISCW 280 (424)
T ss_pred CCchHHHHHHHHHHHhhEEEEEEccccceeeccCCcccchH-------------HHHHHHHHHHH--hCCCEEEEEEecc
Confidence 123578999999999999999999999762 2343 23334432 32 3669999999975
Q ss_pred CCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceE
Q 004233 631 PEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIY 710 (766)
Q Consensus 631 ~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (766)
++ ++. +.++... .++.|.++|++| ++++|.+..... .....++
T Consensus 281 ~d----~~~----~~~a~~~-------~l~~L~~~gv~I----~Vk~y~~p~~~~------------------~~~~~~f 323 (424)
T PHA02820 281 QR----SSF----IMRNFLR-------SIAMLKSKNINI----EVKLFIVPDADP------------------PIPYSRV 323 (424)
T ss_pred CC----CCc----cHHHHHH-------HHHHHhccCceE----EEEEEEcCcccc------------------cCCccee
Confidence 43 222 2233332 257788899987 777786521110 0012469
Q ss_pred EeeeEEEEeeeEeEEccCCcCcccCCCCCcccceeeeeCC
Q 004233 711 VHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (766)
Q Consensus 711 ~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p 750 (766)
+|+|+||+|+ +++|||+|||.|||.. |.|++++++++
T Consensus 324 ~HaK~~vvD~-~a~IGTsN~D~rsf~~--n~ev~~~i~~~ 360 (424)
T PHA02820 324 NHAKYMVTDK-TAYIGTSNWTGNYFTD--TCGVSINITPD 360 (424)
T ss_pred eeeeEEEEcc-cEEEECCcCCHHHHhc--cCcEEEEEecC
Confidence 9999999997 6999999999999995 59999999987
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=2.5e-38 Score=352.77 Aligned_cols=356 Identities=17% Similarity=0.147 Sum_probs=228.1
Q ss_pred ccCCeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHH
Q 004233 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (766)
Q Consensus 209 ~~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~ 288 (766)
..++.++++.+| .++|++|+++|++|+++|+|++|+|..| +.| ..|+
T Consensus 22 ~~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D-----------~~g--~~il 68 (451)
T PRK09428 22 QSPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLEDD-----------EAG--REIL 68 (451)
T ss_pred cCcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecCC-----------chH--HHHH
Confidence 467889999997 8899999999999999999999999876 334 8999
Q ss_pred HHHHHHHh--cCCEEEEEEecCC-------CccCccccccCCccccCcHHHHhhhcCC--CceEEecccCCCcccchhhh
Q 004233 289 ELLKYKSE--EGVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKHS--SVNCVLAPRYASSKLSYFKQ 357 (766)
Q Consensus 289 ~aL~~aa~--rGV~VrILv~D~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~~--gi~v~~~~~~~~~~~~~~~~ 357 (766)
++|.+|++ +||+|+||+ |.. |+... ..+..+...|+++ |+++.++.. |. .
T Consensus 69 ~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~~----------~~~~~~~~~l~~~~~gv~v~~f~~-p~---~---- 129 (451)
T PRK09428 69 DALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAAS----------NTNADWYCEMAQEYPGVDIPVYGV-PV---N---- 129 (451)
T ss_pred HHHHHHHhcCCCcEEEEEE-EcccccccccccCCC----------CcCHHHHHHHHHhCCCceEEEcCC-cc---c----
Confidence 99999865 799999997 984 33210 0123566667654 689876521 11 1
Q ss_pred ccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeee
Q 004233 358 QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLH 437 (766)
Q Consensus 358 ~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~ 437 (766)
....+.++|+|++|||++ ++|+| +|+++.|+ +. + . ....|..
T Consensus 130 -~~e~~gr~HrKi~IiD~~--------v~ysG-aNi~d~Yl-~~-~------------------------~--~~r~Dry 171 (451)
T PRK09428 130 -TREALGVLHLKGFIIDDT--------VLYSG-ASLNNVYL-HQ-H------------------------D--KYRYDRY 171 (451)
T ss_pred -cchhhhhceeeEEEECCC--------EEEec-ccccHHHh-cC-C------------------------c--ccCcceE
Confidence 113466899999999998 99997 89999443 21 0 0 1112778
Q ss_pred eEEeChHHHHHHHHHHHHHhhhccchhhhhhhcccc-ccccc--chh-hccccccccCccccccCCCccccCCCCccccc
Q 004233 438 CRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVS-HWRDD--YLI-KIGRISWILSPELSLKTNGTTIVPRDDNVVRV 513 (766)
Q Consensus 438 v~v~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~-~~~~~--~l~-~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~ 513 (766)
++|+||++.++...|.++|..++... .... .|... ... .+..+...+.. ..+.++
T Consensus 172 ~~i~g~~la~~~~~fi~~~~~~~~~v------~~l~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~------- 230 (451)
T PRK09428 172 HLIRNAELADSMVNFIQQNLLNSPAV------NRLDQPNRPKTKEIKNDIRQFRQRLRD--------AAYQFQ------- 230 (451)
T ss_pred EEEeCchHHHHHHHHHHHHhhccCcc------ccccccccccchhhHHHHHHHHHHHhh--------hccCcc-------
Confidence 88999999999999999997654310 0000 00000 000 00000000000 000000
Q ss_pred ccCCCCCceEeEEEeeccCCCCCCCCCCcccccccccccccCccchhhHHHHHHHHHHhccceEEEeccccccccCCCCc
Q 004233 514 SKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPS 593 (766)
Q Consensus 514 ~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~ 593 (766)
.. .+...+++....+.| | ...+...+..+|.+|+++|+|+||||+|+
T Consensus 231 --~~-~~~~~~~v~p~~g~g-----~-------------------~~~l~~~~~~li~~A~~~i~I~TPYF~p~------ 277 (451)
T PRK09428 231 --GQ-ANNDELSVTPLVGLG-----K-------------------KNLLNKTIFHLMASAEQKLTICTPYFNLP------ 277 (451)
T ss_pred --cc-cCCCCeEEeeeeccC-----C-------------------chHHHHHHHHHHhccCcEEEEEeCCcCCC------
Confidence 00 011122333221111 1 14567889999999999999999999953
Q ss_pred cccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchhhhhHhhHHHHHHHHHHH-------HHHHHHcc
Q 004233 594 YKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVV-------AQELREMQ 666 (766)
Q Consensus 594 ~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~L~~~G 666 (766)
. .+..++..+++ +||+|+||+|.....+.-.+..+.++.++...+ .|... .+.|.++|
T Consensus 278 ~-----------~l~~~L~~a~~--rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G 342 (451)
T PRK09428 278 A-----------ILVRNIIRLLR--RGKKVEIIVGDKTANDFYIPPDEPFKIIGALPY--LYEINLRRFAKRLQYYIDNG 342 (451)
T ss_pred H-----------HHHHHHHHHHh--cCCcEEEEcCCcccccCcCCCccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcC
Confidence 2 34455555655 559999999974333322223344555555443 11111 12344555
Q ss_pred ---cCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEEeeeEeEEccCCcCcccCCCCCcccc
Q 004233 667 ---VDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEI 743 (766)
Q Consensus 667 ---v~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~ 743 (766)
++ +|.+ .+.++|+|.|+||+++++|||+|||.||+. +|+|+
T Consensus 343 ~l~v~--------i~~~--------------------------~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~ 386 (451)
T PRK09428 343 QLNVR--------LWKD--------------------------GDNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLEN 386 (451)
T ss_pred cceEE--------EEec--------------------------CCCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccc
Confidence 33 3432 245899999999999999999999999998 67999
Q ss_pred eeeeeCCcchhhhccC
Q 004233 744 AMGSYQPHHTWARKLK 759 (766)
Q Consensus 744 ~v~i~~p~~~~~~~~~ 759 (766)
+++|+||+..|.++..
T Consensus 387 ~l~i~d~~~~l~~~~~ 402 (451)
T PRK09428 387 ALLIHDPKQELAEQRE 402 (451)
T ss_pred eEEEECChHHHHHHHH
Confidence 9999999877766543
No 11
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=3.4e-36 Score=341.29 Aligned_cols=337 Identities=25% Similarity=0.341 Sum_probs=236.6
Q ss_pred ccCCeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHH
Q 004233 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (766)
Q Consensus 209 ~~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~ 288 (766)
..++.++++.++ .+.|.+++++|++|+++|++++|++.++ ..| ..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~d-----------~~~--~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQDD-----------ELG--REIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeCC-----------hhH--HHHH
Confidence 578889999987 8899999999999999999999998876 223 8999
Q ss_pred HHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCc-eEEecccCCCcccchhhhccccceeccc
Q 004233 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVLAPRYASSKLSYFKQQIVGTIFTHH 367 (766)
Q Consensus 289 ~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~~~~~~~r~H 367 (766)
++|.+||++||+||+|+ |..|+... ........++++|+ .+....+..... . .....+.|+|
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~--~---~~~~~~~r~H 166 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPRP--L---RFRRLNRRLH 166 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCccccc--c---hhhhhhcccc
Confidence 99999999999999997 99987331 12356788889999 665432221111 0 1234678999
Q ss_pred ceEEEEccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHH
Q 004233 368 QKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYD 447 (766)
Q Consensus 368 ~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpav~d 447 (766)
+|++|||+. ++|+||+|++++++... ...++|+|+++++.||+|.+
T Consensus 167 ~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~~ 212 (438)
T COG1502 167 RKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVAD 212 (438)
T ss_pred ceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHHH
Confidence 999999998 99999999999665321 02358999999999999999
Q ss_pred HHHHHHHHHhhhccchhhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEE
Q 004233 448 VLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIF 527 (766)
Q Consensus 448 l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~ 527 (766)
+...|.++|+....... .+ ... ..+. .+.. .. ........+|++
T Consensus 213 l~~~f~~~w~~~~~~~~--------------~~---~~~---~~~~----------~~~~--~~----~~~~~~~~~~~~ 256 (438)
T COG1502 213 LARLFIQDWNLESGSSK--------------PL---LAL---VRPP----------LQSL--SL----LPVGRGSTVQVL 256 (438)
T ss_pred HHHHHHHHhhhccCcCc--------------cc---ccc---cccc----------cccc--cc----cccccCcceEEE
Confidence 99999999998643210 00 000 0000 0000 00 000111225666
Q ss_pred eeccCCCCCCCCCCcccccccccccccCccchhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHH
Q 004233 528 RSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMEL 607 (766)
Q Consensus 528 rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~ 607 (766)
.+ + |..... . ....+...++.+|.+|+++|+|++|||++. . .+
T Consensus 257 ~~---~-----P~~~~~---------~---~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~------~-----------~~ 299 (438)
T COG1502 257 SS---G-----PDKGLG---------S---ELIELNRLLLKAINSARESILIATPYFVPD------R-----------EL 299 (438)
T ss_pred ec---C-----Cccccc---------h---hhhhHHHHHHHHHHhhceEEEEEcCCcCCC------H-----------HH
Confidence 54 2 321100 0 011245899999999999999999999953 2 33
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCc
Q 004233 608 ALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP 687 (766)
Q Consensus 608 a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~ 687 (766)
..++..+.+ +||+|+||+|... .++ ..+++++.+. .+..|.+.|+++ |.+
T Consensus 300 ~~al~~a~~--~Gv~V~ii~~~~~--~~d----~~~~~~~~~~-------~~~~l~~~gv~i--------~~~------- 349 (438)
T COG1502 300 LAALKAAAR--RGVDVRIIIPSLG--AND----SAIVHAAYRA-------YLKELLEAGVKV--------YEY------- 349 (438)
T ss_pred HHHHHHHHh--cCCEEEEEeCCCC--CCC----hHHHHHHHHH-------HHHHHHHhCCEE--------EEe-------
Confidence 455555544 5699999999521 222 2233444443 377888999874 433
Q ss_pred cccccCCCCCccccccCCccc-eEEeeeEEEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 688 KDVLANNGDKVSDSQKNQRFM-IYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~-~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
. . .++|+|+|||||++++|||+|||.||+. .|+|++++|+|++++
T Consensus 350 -----------------~--~g~~lH~K~~iiD~~~~~vGS~N~~~rS~~--lN~E~~~~i~d~~~~ 395 (438)
T COG1502 350 -----------------P--GGAFLHSKVMIIDDRTVLVGSANLDPRSLR--LNFEVGLVIEDPELA 395 (438)
T ss_pred -----------------c--CCCcceeeEEEEcCCEEEEeCCcCCHhHHH--HhhhheeEEeCHHHH
Confidence 1 2 3899999999999999999999999998 459999999999775
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=7.1e-36 Score=328.60 Aligned_cols=317 Identities=16% Similarity=0.189 Sum_probs=205.9
Q ss_pred cchHHHHHHHHHhccceEEEEEee--cccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccc
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWS--VFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVK 318 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~--~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~ 318 (766)
..+|++++++|++||++|+|++|+ |.+| ..| .+|.++|++||+|||+||||+ |+.|+.
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~~~d-----------~~g--~~i~~aL~~aa~rGV~Vril~-D~~~~~------ 89 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCNLRST-----------PEG--RLILDKLKEAAESGVKVTILV-DEQSGD------ 89 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEecccCC-----------chH--HHHHHHHHHhccCCCeEEEEe-cCCCCC------
Confidence 468999999999999999999998 5554 234 899999999999999999996 987532
Q ss_pred cCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccc
Q 004233 319 TPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY 398 (766)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~ 398 (766)
...+.|+++||++........ . ....+|+|++||||+ +||+||+||++ +|
T Consensus 90 ----------~~~~~L~~~Gv~v~~~~~~~~---~--------~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~ 139 (369)
T PHA03003 90 ----------KDEEELQSSNINYIKVDIGKL---N--------NVGVLLGSFWVSDDR--------RCYIGNASLTG-GS 139 (369)
T ss_pred ----------ccHHHHHHcCCEEEEEecccc---C--------CCCceeeeEEEEcCc--------EEEEecCccCC-cc
Confidence 346788899999875422110 0 011368999999999 99999999999 55
Q ss_pred CCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhccchhhhhhhccccccccc
Q 004233 399 DTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (766)
Q Consensus 399 d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~ 478 (766)
.+..| ..+.|+|. ||+|.+|++.|..+|..+++....
T Consensus 140 ~~~~~-------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~------------- 176 (369)
T PHA03003 140 ISTIK-------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVF------------- 176 (369)
T ss_pred cCccc-------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcc-------------
Confidence 33211 22578883 999999999999999876433100
Q ss_pred chhhccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEEeeccCCCCCCCCCCcccccccccccccCccc
Q 004233 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (766)
Q Consensus 479 ~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 558 (766)
.... ..+ ..|... . .......+ .+++.+ + |..... . .
T Consensus 177 --~~~~-~~~--------------~~~~~~--~-~~~~~~~~---~~~~~s---~-----P~~~~~---------~---~ 213 (369)
T PHA03003 177 --NRLC-CAC--------------CLPVST--K-YHINNPIG---GVFFSD---S-----PEHLLG---------Y---S 213 (369)
T ss_pred --cccc-ccc--------------CCcccc--c-ccccCCCc---ceEEec---C-----ChHHcC---------C---C
Confidence 0000 000 000000 0 00000011 123322 2 221100 0 0
Q ss_pred hhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHH-HcCCCeEEEEEecCCCCCCCCC
Q 004233 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKI-RANERFAVYVIIPMWPEGDPKT 637 (766)
Q Consensus 559 ~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~-~~grgV~V~Illp~~~~g~~d~ 637 (766)
...+..+|+++|.+||++|+|++|||+|.... +.. ......+..+|.+++ + |||+||||+|.+... +
T Consensus 214 ~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~--d~~-----~~~~~~i~~AL~~AAa~--RGV~VRILv~~~~~~--~- 281 (369)
T PHA03003 214 RTLDADVVLHKIKSAKKSIDLELLSLVPVIRE--DDK-----TTYWPDIYNALIRAAIN--RGVKVRLLVGSWKKN--D- 281 (369)
T ss_pred CCcCHHHHHHHHHHHhhEEEEEEeccccEEee--CCC-----CccHHHHHHHHHHHHHc--CCCEEEEEEecCCcC--C-
Confidence 12467999999999999999999999864211 110 000124555555542 4 669999999963211 1
Q ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEE
Q 004233 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (766)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~I 717 (766)
. .... +.+.|+++|++. .-.+++|.+ .+|+|+||
T Consensus 282 ~--------~~~~-------~~~~L~~~G~~~--~i~vri~~~-----------------------------~~H~K~~V 315 (369)
T PHA03003 282 V--------YSMA-------SVKSLQALCVGN--DLSVKVFRI-----------------------------PNNTKLLI 315 (369)
T ss_pred c--------hhhh-------HHHHHHHcCCCC--CceEeeecC-----------------------------CCCceEEE
Confidence 0 0111 267788999542 112334421 17999999
Q ss_pred EeeeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 718 VDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 718 VDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
|||++++|||+|||.||+.. +.|+++.+.+++++
T Consensus 316 VD~~~a~iGS~N~d~~s~~~--~~e~~~~~~~~~~a 349 (369)
T PHA03003 316 VDDEFAHITSANFDGTHYLH--HAFVSFNTIDKELV 349 (369)
T ss_pred EcCCEEEEeccccCchhhcc--CCCeEEecCChhHH
Confidence 99999999999999999984 59999998888774
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.88 E-value=5e-22 Score=193.17 Aligned_cols=157 Identities=50% Similarity=0.808 Sum_probs=130.7
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe
Q 004233 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (766)
Q Consensus 12 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~ 91 (766)
..+|||+|+|+|++|++|++||+.++.++++|.+...|...... ... ........++||||+|.+++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~g~sDPYv~V~l~~~ 69 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLK-----RPS-------SHRHVGKITSDPYATVDLAGA 69 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccc-----ccc-------ccccCCCCCcCeEEEEEECCe
Confidence 46899999999999999999999888888888865544332110 000 001123345999999999987
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCc
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g 171 (766)
.++||++++++.||+|||+|.|.+.++...|.|+|||+|.+++++||++.+|++++..+...+.|++|....+++.+..|
T Consensus 70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~ 149 (158)
T cd04015 70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA 149 (158)
T ss_pred EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence 77899999999999999999999988877899999999998899999999999999988888999999877788878889
Q ss_pred eEEEEEEEE
Q 004233 172 SIQLELKFT 180 (766)
Q Consensus 172 ~i~l~l~~~ 180 (766)
.|+++++|+
T Consensus 150 ~l~v~~~f~ 158 (158)
T cd04015 150 KIRVSLQFT 158 (158)
T ss_pred EEEEEEEEC
Confidence 999999985
No 14
>PRK05443 polyphosphate kinase; Provisional
Probab=99.87 E-value=8.3e-21 Score=220.91 Aligned_cols=273 Identities=16% Similarity=0.182 Sum_probs=190.0
Q ss_pred CccchHHHHHHHHHhccc-----eEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccC
Q 004233 239 KPGTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHD 313 (766)
Q Consensus 239 ~~~~~f~~l~~~I~~A~~-----~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~ 313 (766)
.|-+.|..+++.|++|.+ +|.++.|.+..+ .+|.++|++||+|||+|+||+ +....+
T Consensus 345 ~PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~----------------s~iv~aL~~Aa~~Gk~V~vlv-e~karf- 406 (691)
T PRK05443 345 HPYESFDPVVEFLRQAAADPDVLAIKQTLYRTSKD----------------SPIVDALIEAAENGKQVTVLV-ELKARF- 406 (691)
T ss_pred CCccCchHHHHHHHHhccCCCeeEEEEEEEEecCC----------------HHHHHHHHHHHHcCCEEEEEE-ccCccc-
Confidence 345568899999999998 899999988654 799999999999999999998 643211
Q ss_pred ccccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccC
Q 004233 314 KLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL 393 (766)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni 393 (766)
....+..+.+.|+++||+|.+. ++ .+..|.|+++||++ .+..-..++++|+.|+
T Consensus 407 ---------de~~n~~~~~~L~~aGv~V~y~--~~--------------~~k~HaK~~lid~~-e~~~~~~~~~iGTgN~ 460 (691)
T PRK05443 407 ---------DEEANIRWARRLEEAGVHVVYG--VV--------------GLKTHAKLALVVRR-EGGGLRRYVHLGTGNY 460 (691)
T ss_pred ---------cHHHHHHHHHHHHHcCCEEEEc--cC--------------CccceeEEEEEEee-cCCceeEEEEEcCCCC
Confidence 1112345678899999999652 11 12389999999996 2223345899999999
Q ss_pred CCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeC-hHHHHHHHHHHHHHhhhccchhhhhhhccc
Q 004233 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG-PAAYDVLINFEQRWRKATKLTELTFKFKRV 472 (766)
Q Consensus 394 ~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~G-pav~dl~~~F~~~W~~~~~~~~~~~~~~~~ 472 (766)
.+ ++. ..|.|+++.... ..+.++...|...|.......
T Consensus 461 n~-~s~-------------------------------~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~--------- 499 (691)
T PRK05443 461 NP-KTA-------------------------------RLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK--------- 499 (691)
T ss_pred Cc-chh-------------------------------hhccceeEEEeChHHHHHHHHHHHHHhCcCcccc---------
Confidence 88 331 357899999555 588999999999975421100
Q ss_pred ccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEEeeccCCCCCCCCCCccccccccccc
Q 004233 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (766)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~ 552 (766)
+ -.++-+ |...
T Consensus 500 -------------~-------------------------------------~~l~~s---------P~~~---------- 510 (691)
T PRK05443 500 -------------L-------------------------------------RKLLVS---------PFTL---------- 510 (691)
T ss_pred -------------c-------------------------------------cEEeec---------CccH----------
Confidence 0 011111 2211
Q ss_pred ccCccchhhHHHHHHHHHHhccc----eEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEe-
Q 004233 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII- 627 (766)
Q Consensus 553 ~~~~~~~~si~~a~~~lI~~Ak~----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Ill- 627 (766)
...+...+.+.|.+||+ +|+|.++|+. |. .+..+|..|++ +||+|+||+
T Consensus 511 ------~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l~-------d~-----------~ii~aL~~As~--~GV~V~liVR 564 (691)
T PRK05443 511 ------RERLLELIDREIANARAGKPARIIAKMNSLV-------DP-----------QIIDALYEASQ--AGVKIDLIVR 564 (691)
T ss_pred ------HHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC-------CH-----------HHHHHHHHHHH--CCCeEEEEEe
Confidence 46788889999999999 9999999954 22 44555656655 459999999
Q ss_pred ------cCCCCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCcccc
Q 004233 628 ------PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDS 701 (766)
Q Consensus 628 ------p~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~ 701 (766)
|+.| |.++...+ ++ +...+++ +++| |.+
T Consensus 565 GiC~l~pgip-g~sd~i~v--------~s-------~v~r~Le-h~rI--------y~f--------------------- 598 (691)
T PRK05443 565 GICCLRPGVP-GLSENIRV--------RS-------IVGRFLE-HSRI--------YYF--------------------- 598 (691)
T ss_pred cccccCCCCC-CCCCCEEE--------HH-------HHHHHHh-cCEE--------EEE---------------------
Confidence 2211 23333211 12 2455556 3554 322
Q ss_pred ccCCccceEEeeeEEEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 702 QKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 702 ~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
. ++ ||.+++||||||+.|||. ++.|+++.|+|+++.
T Consensus 599 ---~--~g---------d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~~ 634 (691)
T PRK05443 599 ---G--NG---------GDEEVYISSADWMPRNLD--RRVEVLFPILDPRLK 634 (691)
T ss_pred ---e--CC---------CCcEEEEECCCCCccccc--ceEEEeEEEeCHHHH
Confidence 0 11 888999999999999998 669999999999874
No 15
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.86 E-value=1e-20 Score=218.75 Aligned_cols=269 Identities=16% Similarity=0.186 Sum_probs=186.4
Q ss_pred ccchHHHHHHHHHhccc-----eEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEec---CCCc
Q 004233 240 PGTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD---DKTS 311 (766)
Q Consensus 240 ~~~~f~~l~~~I~~A~~-----~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D---~~gs 311 (766)
|-+-|..+++.|++|.+ +|.|+.|.+..+ .+|+++|++||++|++|++++ + .++.
T Consensus 337 PY~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~----------------s~ii~aL~~Aa~~Gk~V~v~v-eLkArfde 399 (672)
T TIGR03705 337 PYESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKD----------------SPIIDALIEAAENGKEVTVVV-ELKARFDE 399 (672)
T ss_pred CccCHHHHHHHHHHHhcCCCceEEEEEEEEecCC----------------cHHHHHHHHHHHcCCEEEEEE-Eehhhccc
Confidence 35568899999999998 899999988654 799999999999999999998 7 3332
Q ss_pred cCccccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccc
Q 004233 312 HDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGI 391 (766)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~ 391 (766)
. .+-.+.+.|+++|++|.+. . ..++.|+|+++||.+- +..-...+++|.-
T Consensus 400 ~-------------~ni~wa~~le~aG~~viyg--~--------------~~~k~H~K~~li~r~~-~~~~~~y~~igTg 449 (672)
T TIGR03705 400 E-------------ANIRWARRLEEAGVHVVYG--V--------------VGLKTHAKLALVVRRE-GGELRRYVHLGTG 449 (672)
T ss_pred h-------------hhHHHHHHHHHcCCEEEEc--C--------------CCeeeeeEEEEEEEee-CCceEEEEEecCC
Confidence 1 1235667899999999862 1 1245899999999861 2222346778877
Q ss_pred cCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeE-EeChHHHHHHHHHHHHHhhhccchhhhhhhc
Q 004233 392 DLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKATKLTELTFKFK 470 (766)
Q Consensus 392 Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~-v~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~ 470 (766)
|+.... ...|+|+++. ..+..+.|+...|...|.......
T Consensus 450 N~n~~t--------------------------------a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~------- 490 (672)
T TIGR03705 450 NYHPKT--------------------------------ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK------- 490 (672)
T ss_pred CCCCcc--------------------------------cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh-------
Confidence 766511 1468999999 788899999999998886421110
Q ss_pred ccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEEeeccCCCCCCCCCCccccccccc
Q 004233 471 RVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSL 550 (766)
Q Consensus 471 ~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~ 550 (766)
+ . .++ .+ |...
T Consensus 491 ----~--------~----------------------------------------~l~----~~-----P~~~-------- 501 (672)
T TIGR03705 491 ----F--------K----------------------------------------HLL----VS-----PFTL-------- 501 (672)
T ss_pred ----h--------H----------------------------------------HHH----hC-----cchH--------
Confidence 0 0 000 01 2211
Q ss_pred ccccCccchhhHHHHHHHHHHhccc----eEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEE
Q 004233 551 ICAKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVI 626 (766)
Q Consensus 551 ~~~~~~~~~~si~~a~~~lI~~Ak~----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Il 626 (766)
...+...+.+.|.+||+ +|+|.++|+. |. .+..+|..|++ +||+|++|
T Consensus 502 --------~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l~-------D~-----------~ii~aL~~As~--aGV~V~Li 553 (672)
T TIGR03705 502 --------RKRLLELIDREIENARAGKPARIIAKMNSLV-------DP-----------DLIDALYEASQ--AGVKIDLI 553 (672)
T ss_pred --------HHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC-------CH-----------HHHHHHHHHHH--CCCeEEEE
Confidence 45678888889999999 9999999954 22 44455556655 45999999
Q ss_pred e-------cCCCCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCcc
Q 004233 627 I-------PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVS 699 (766)
Q Consensus 627 l-------p~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~ 699 (766)
+ |+.| |.++...+. + +...+++ |++| |.+
T Consensus 554 vRGiCcL~pgip-g~sd~i~v~--------s-------iv~r~Le-h~rI--------y~f------------------- 589 (672)
T TIGR03705 554 VRGICCLRPGVP-GLSENIRVR--------S-------IVGRFLE-HSRI--------YYF------------------- 589 (672)
T ss_pred EecccccCCCCC-CCCCCEEEE--------E-------EhhHhhC-cCEE--------EEE-------------------
Confidence 9 2111 233322221 1 2444555 5554 322
Q ss_pred ccccCCccceEEeeeEEEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 700 DSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 700 ~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
|.- ||.+++||||||+.|||. ++.|+++.|+||.+.
T Consensus 590 ------------~~~----~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~~ 625 (672)
T TIGR03705 590 ------------GNG----GEEKVYISSADWMTRNLD--RRVEVLFPIEDPTLK 625 (672)
T ss_pred ------------eCC----CCcEEEEECCCCCCCccc--ceEEEEEEEcCHHHH
Confidence 101 688999999999999998 669999999999875
No 16
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.80 E-value=5.8e-19 Score=163.33 Aligned_cols=117 Identities=23% Similarity=0.495 Sum_probs=102.0
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
|.|+|+|++|+++++.+ .+. +||||++.++.++. ||
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~~-kT 37 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAVY-ET 37 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEEE-Ee
Confidence 89999999999988766 454 99999999988765 99
Q ss_pred ccccC-CCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccce-eccCCceeEEEEEccCCCCCCCCCCceE
Q 004233 97 RVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGASI 173 (766)
Q Consensus 97 ~~~~~-~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~g~i 173 (766)
+++.+ +.||+|||+|.|++.+....|.|+|||+|.++ |++||.+.+++. .+..++..+.|++|....++ +..|+|
T Consensus 38 ~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--~~~g~i 115 (121)
T cd04016 38 PTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--DKEGMI 115 (121)
T ss_pred EEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--CCceEE
Confidence 99876 89999999999999887778999999999998 899999999996 57778888999999655443 367999
Q ss_pred EEEEEE
Q 004233 174 QLELKF 179 (766)
Q Consensus 174 ~l~l~~ 179 (766)
+|+++|
T Consensus 116 ~l~l~y 121 (121)
T cd04016 116 NLVFSY 121 (121)
T ss_pred EEEEeC
Confidence 999987
No 17
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.80 E-value=1.4e-17 Score=176.98 Aligned_cols=342 Identities=15% Similarity=0.156 Sum_probs=194.0
Q ss_pred chHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCC
Q 004233 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (766)
Q Consensus 242 ~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~ 321 (766)
.++++.+++|++|+++++|..|.+.-.-.-+-.+.. ....+..+...|..++.+||.|||.. +......
T Consensus 72 sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~ds--St~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~-------- 140 (456)
T KOG3603|consen 72 STKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDS--STQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP-------- 140 (456)
T ss_pred cHHHHHHHHhhccceEEEEEEEeeccccceeccCCC--cchHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC--------
Confidence 456899999999999999988876521100000000 11123789999999999999999986 4431111
Q ss_pred ccccCcHHHHhhhcCCC-ceEEec--ccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccc
Q 004233 322 VMATHDEETKKFFKHSS-VNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY 398 (766)
Q Consensus 322 ~~~~~~~~~~~~l~~~g-i~v~~~--~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~ 398 (766)
.......|.+.| ++++-- +++.. -...|.|++|||++ .-|+||+||++ |-
T Consensus 141 -----~~~d~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDW-rS 193 (456)
T KOG3603|consen 141 -----PNADLQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDW-RS 193 (456)
T ss_pred -----CcccHHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccch-hh
Confidence 112344566666 666532 22221 12389999999998 99999999999 55
Q ss_pred CCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEe--ChHHHHHHHHHHHHHhhhccchhhhhhhccccccc
Q 004233 399 DTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD--GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR 476 (766)
Q Consensus 399 d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~--Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~ 476 (766)
.++ -..+++.++ -+++.||.+.|.++|....... ...+.|+
T Consensus 194 lTq-------------------------------vkElGv~v~NCpclakDL~kiFe~yW~lg~~~s------~~p~~wp 236 (456)
T KOG3603|consen 194 LTQ-------------------------------VKELGVVVRNCPCLAKDLKKIFERYWYLGNAKS------LIPKKWP 236 (456)
T ss_pred ccc-------------------------------eeEeeeEEecChhHHHHHHHHHHHHhcCCCCCc------cCCCCCc
Confidence 432 124455554 4589999999999998754431 0012333
Q ss_pred ccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEEeeccCCCCCCCCCCcccccccccccccCc
Q 004233 477 DDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV 556 (766)
Q Consensus 477 ~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~ 556 (766)
..+...+... .|... ..+......++..| |.. .++.+
T Consensus 237 ~~~st~~N~~----~p~~~--------------------~~dg~~~~~y~saS---------P~~---------~~~~g- 273 (456)
T KOG3603|consen 237 NCYSTHYNKP----LPMKI--------------------AVDGTPATPYISAS---------PPP---------LNPSG- 273 (456)
T ss_pred cccccccccc----Cccee--------------------ecCCCCcceEEccC---------CCC---------CCCCC-
Confidence 2211111100 00000 00011222344332 111 11112
Q ss_pred cchhhHHHHHHHHHHhccceEEEeccccccccCC-CCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 004233 557 VIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYA-WPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDP 635 (766)
Q Consensus 557 ~~~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~-~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~ 635 (766)
...-++|+++.|..|+++|||.-.-|.|...+ -| .+...+..|++ +|+- |||+||+|+..|...++
T Consensus 274 --rt~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-------~~fw~iDdaiR--~aa~--RgV~vR~lvs~~~~~~~ 340 (456)
T KOG3603|consen 274 --RTWDLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-------HRFWEIDDAIR--RAAV--RGVKVRLLVSCWKHSEP 340 (456)
T ss_pred --CchhHHHHHHHHHHHhhheeeeehhccchheeecC-------cchhhhhHHHH--HHhh--cceEEEEEEeccCCCCc
Confidence 23347899999999999999996655544221 11 12223344444 3333 67999999998765433
Q ss_pred CCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeE
Q 004233 636 KTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (766)
Q Consensus 636 d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~ 715 (766)
. +..+ -+++ ..+...+.+..+ -+++|-.-... .. + -......|+|+
T Consensus 341 ~---m~~~----L~SL----q~l~~~~~~~~i------qvk~f~VP~~~-------------~~---~-ip~~Rv~HnKy 386 (456)
T KOG3603|consen 341 S---MFRF----LRSL----QDLSDPLENGSI------QVKFFIVPQTN-------------IE---K-IPFARVNHNKY 386 (456)
T ss_pred h---HHHH----HHHH----HHhcCccccCce------EEEEEEeCCCc-------------cc---c-Cchhhhcccee
Confidence 2 1111 1111 011112222222 23455431100 00 0 01134799999
Q ss_pred EEEeeeEeEEccCCcCcccCCCCCcccceeeeeCCc
Q 004233 716 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 751 (766)
Q Consensus 716 ~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~ 751 (766)
||-++ .++||++||..-.|..+ .-++++|..+.
T Consensus 387 mVTe~-aayIGTSNws~dYf~~T--aG~~ivv~q~~ 419 (456)
T KOG3603|consen 387 MVTES-AAYIGTSNWSGDYFTST--AGTAIVVRQTP 419 (456)
T ss_pred EEeec-ceeeeccCCCccceecc--CceEEEEecCC
Confidence 99998 79999999999889765 88999998873
No 18
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.76 E-value=9.8e-18 Score=155.92 Aligned_cols=120 Identities=26% Similarity=0.388 Sum_probs=106.7
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~ 97 (766)
.|.|+|++|++|+.++..+. +||||++.+.+..+.+|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~ 38 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK 38 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence 37899999999998886554 999999999886778999
Q ss_pred cccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEEEE
Q 004233 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (766)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l~ 176 (766)
++.++.||+|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+.....|++|....+ .+..|+|.|.
T Consensus 39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~ 116 (121)
T cd04042 39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLV 116 (121)
T ss_pred eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEE
Confidence 999999999999999999877778999999999985 9999999999999998888999999965543 2468999999
Q ss_pred EEEEe
Q 004233 177 LKFTP 181 (766)
Q Consensus 177 l~~~~ 181 (766)
++|.|
T Consensus 117 ~~~~~ 121 (121)
T cd04042 117 VTLTP 121 (121)
T ss_pred EEECC
Confidence 99987
No 19
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=1.2e-17 Score=155.55 Aligned_cols=114 Identities=24% Similarity=0.374 Sum_probs=100.3
Q ss_pred EEEEEEEeeC---CCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004233 19 LDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (766)
Q Consensus 19 l~v~i~~a~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~ 95 (766)
|+|+|++|++ |+.+|..+. +||||+|.+++++ .|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~-~r 38 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKW-VR 38 (126)
T ss_pred eEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEE-eE
Confidence 8999999999 776665554 9999999998865 59
Q ss_pred eccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCC-------CCceeEEEeccceeccCCceeEEEEEccCCCCCCCC
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~-------~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 168 (766)
|++++++.||+|||+|.|.+..+...|.|+|||++.. ++++||++.++|+.+..+.....||+|....+++.+
T Consensus 39 Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~ 118 (126)
T cd08379 39 TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK 118 (126)
T ss_pred cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCcc
Confidence 9999999999999999999988777899999999886 699999999999999988889999999766655567
Q ss_pred CCceEEE
Q 004233 169 PGASIQL 175 (766)
Q Consensus 169 ~~g~i~l 175 (766)
..|+|++
T Consensus 119 ~~g~l~~ 125 (126)
T cd08379 119 KMGELEC 125 (126)
T ss_pred CCcEEEe
Confidence 7888875
No 20
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.74 E-value=2.1e-17 Score=154.82 Aligned_cols=116 Identities=22% Similarity=0.493 Sum_probs=99.3
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~~ 98 (766)
++|+|++|++|+.++..+. +||||+|.+.+.+ .||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v 37 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV 37 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence 4799999999998876554 9999999998755 59999
Q ss_pred ccCCCCCeeeeeEEEeecC------CCceEEEEEEEcCCCC-CceeEEEeccceecc--CCceeEEEEEccCCCCCCCCC
Q 004233 99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP 169 (766)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~------~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~--~~~~~~~~~~l~~~~~~~~~~ 169 (766)
++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.|+|.++. .+.....|++|....++..+.
T Consensus 38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~ 117 (126)
T cd08682 38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE 117 (126)
T ss_pred ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence 9999999999999999877 3456999999999987 999999999999987 566788999996554544457
Q ss_pred CceEEEEE
Q 004233 170 GASIQLEL 177 (766)
Q Consensus 170 ~g~i~l~l 177 (766)
.|+|+|++
T Consensus 118 ~Gei~l~~ 125 (126)
T cd08682 118 RGEIEVDI 125 (126)
T ss_pred cceEEEEe
Confidence 89999987
No 21
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.72 E-value=1.5e-16 Score=149.08 Aligned_cols=120 Identities=21% Similarity=0.416 Sum_probs=101.3
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
..|+|+|++|++|+..+ . +||||+|.+++..+.||
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~------------------------------------------~DPYv~v~l~~~~~~kT 38 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---V------------------------------------------PHPYCVISLNEVKVART 38 (126)
T ss_pred eEEEEEEEEeeCCCCCC---C------------------------------------------CCeeEEEEECCEeEEEe
Confidence 56999999999998532 2 89999999988777799
Q ss_pred ccccCCCCCeeeeeEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEE
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~ 174 (766)
++. ++.||.|||+|.|.+..+. ..+.|.|||++.++ +++||.+.+||..+..+...+.|++|......+.+..|+|+
T Consensus 39 ~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~ 117 (126)
T cd08400 39 KVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLR 117 (126)
T ss_pred ecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEE
Confidence 984 6899999999999976554 46899999999887 99999999999999888888999999655433446789999
Q ss_pred EEEEEEec
Q 004233 175 LELKFTPC 182 (766)
Q Consensus 175 l~l~~~~~ 182 (766)
|+++|.+.
T Consensus 118 l~l~~~~~ 125 (126)
T cd08400 118 IRARYSHE 125 (126)
T ss_pred EEEEEEcc
Confidence 99999874
No 22
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.72 E-value=1.3e-16 Score=151.70 Aligned_cols=126 Identities=24% Similarity=0.472 Sum_probs=110.6
Q ss_pred eeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeee
Q 004233 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (766)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~ 93 (766)
-+...|.|.|++|++||.+ .+|||+|.++++.+
T Consensus 8 R~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~~v 40 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKTLY 40 (146)
T ss_pred EEEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCEEE
Confidence 4568899999999999852 57999999999999
Q ss_pred eeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCC-C----CCceeEEEeccceeccCCceeEEEEEccCCCCCC--
Q 004233 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV-F----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP-- 166 (766)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~-~----~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~-- 166 (766)
+||+++.++.||.|+|+|.|...++...|.|.||..+. . ++++||++.||+.++..+...+.||+|+...+.+
T Consensus 41 aRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~ 120 (146)
T cd04013 41 ARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKS 120 (146)
T ss_pred EEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCcc
Confidence 99999999999999999999988888889999976542 2 4799999999999999999999999998877765
Q ss_pred -----CCCCceEEEEEEEEecCCCC
Q 004233 167 -----PKPGASIQLELKFTPCDKNP 186 (766)
Q Consensus 167 -----~~~~g~i~l~l~~~~~~~~p 186 (766)
.+..+.|+++++|.+....|
T Consensus 121 ~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 121 GGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred ccccccCCCCEEEEEEEEEEeeeCC
Confidence 46678999999999987665
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.71 E-value=1.1e-16 Score=148.87 Aligned_cols=119 Identities=26% Similarity=0.427 Sum_probs=100.5
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~~ 98 (766)
|.|+|++|++|+.++.... .+||||.|.+.++.+.||++
T Consensus 2 l~v~v~~a~~L~~~~~~~g-----------------------------------------~sDpYv~v~l~~~~~~kT~v 40 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNK-----------------------------------------MRDCYCTVNLDQEEVFRTKT 40 (121)
T ss_pred eEEEEEEccCCCCCCCCCC-----------------------------------------CcCcEEEEEECCccEEEeeE
Confidence 6899999999998653211 28999999998776789999
Q ss_pred ccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEEEEE
Q 004233 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLEL 177 (766)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l~l 177 (766)
+++|.||+|||+|.|.+......|.|.|||++.++ +++||.+.++++++..+.....|++|. +.....+..|+|+|++
T Consensus 41 ~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~-~~~~~~~~~G~i~l~~ 119 (121)
T cd08401 41 VEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQ-PVDADSEVQGKVHLEL 119 (121)
T ss_pred EECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEE-ccCCCCcccEEEEEEE
Confidence 99999999999999999876678999999999986 899999999999998777788999994 4333334689999998
Q ss_pred EE
Q 004233 178 KF 179 (766)
Q Consensus 178 ~~ 179 (766)
+|
T Consensus 120 ~~ 121 (121)
T cd08401 120 RL 121 (121)
T ss_pred EC
Confidence 75
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.70 E-value=8.9e-17 Score=148.68 Aligned_cols=116 Identities=25% Similarity=0.497 Sum_probs=99.3
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
|.|.|+|++|++|++.+..+. +||||+|.+.+. +.+|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~-~~kT 37 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGV-TKKT 37 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCC-cccc
Confidence 789999999999998887665 999999999874 4689
Q ss_pred ccccC-CCCCeeeeeEEEeecCC-CceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEE
Q 004233 97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (766)
Q Consensus 97 ~~~~~-~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~ 174 (766)
+++++ +.||+|||+|.|.+..+ ...|.|+|||++..++++||++.+++.++..+.....|++|. ..+ +..|+|.
T Consensus 38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~-~~~---~~~G~i~ 113 (118)
T cd08681 38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELT-LKG---RYAGEVY 113 (118)
T ss_pred ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEec-cCC---cEeeEEE
Confidence 98754 79999999999999875 456999999999878999999999999987666778999994 333 4689999
Q ss_pred EEEEE
Q 004233 175 LELKF 179 (766)
Q Consensus 175 l~l~~ 179 (766)
|+++|
T Consensus 114 l~l~f 118 (118)
T cd08681 114 LELTF 118 (118)
T ss_pred EEEEC
Confidence 99986
No 25
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.69 E-value=2.8e-16 Score=147.17 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=89.7
Q ss_pred CCcEEEEEECC-eeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEE
Q 004233 80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (766)
Q Consensus 80 ~dpyv~~~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~ 157 (766)
+||||++.+.. ....||++++++.||+|||+|.|.+......|.|+|||.+..+ +++||++.++++.+..+.....|+
T Consensus 18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 97 (126)
T cd08678 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF 97 (126)
T ss_pred cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence 99999999974 3457999999999999999999999776677999999999987 899999999999998777778899
Q ss_pred EccCCCCCCCCCCceEEEEEEEEecCC
Q 004233 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (766)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~~~~~~~ 184 (766)
+|....+...+..|+|.+++.|.+...
T Consensus 98 ~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 98 PLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EecCCCCCCCCcceEEEEEEEEecccc
Confidence 995443333457899999999987653
No 26
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.69 E-value=2.8e-16 Score=151.43 Aligned_cols=121 Identities=26% Similarity=0.419 Sum_probs=102.5
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~~ 98 (766)
|.|+|++|++|+.++..+. +||||+|.++++. .+|++
T Consensus 2 L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~~-~kTk~ 38 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQV-LRTRP 38 (150)
T ss_pred EEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCEE-eeeEe
Confidence 7999999999999887665 9999999998854 69999
Q ss_pred ccC-CCCCeeeeeEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEeccceeccCC----ceeEEEEEccCCCC-----CC
Q 004233 99 LKN-SQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----SP 166 (766)
Q Consensus 99 ~~~-~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~----~~~~~~~~l~~~~~-----~~ 166 (766)
..+ +.||+|||+|.|.+..+. ..|.|+|+|++..+ +++||++.++|+++..+ .....||+|....+ ++
T Consensus 39 ~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~ 118 (150)
T cd04019 39 SQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKK 118 (150)
T ss_pred ccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccccccc
Confidence 877 699999999999997654 46999999999875 89999999999998643 45689999976544 44
Q ss_pred CCCCceEEEEEEEEec
Q 004233 167 PKPGASIQLELKFTPC 182 (766)
Q Consensus 167 ~~~~g~i~l~l~~~~~ 182 (766)
.+..|+|+|++.|.+.
T Consensus 119 ~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 119 RKFASRIHLRLCLDGG 134 (150)
T ss_pred CcccccEEEEEEecCc
Confidence 5678999999999865
No 27
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.68 E-value=3.5e-16 Score=146.78 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~ 97 (766)
.|.|+|++|++|+..+..+. +||||++.+.++. .||+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~ 37 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR 37 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence 38999999999998775444 9999999998865 5999
Q ss_pred cccCCCCCeeeeeEEEeecCCC----ceEEEEEEEcCCC--CCceeEEEeccceecc-CCceeEEEEEccCCCCCCCCCC
Q 004233 98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG 170 (766)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~--~~~~iG~~~~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~ 170 (766)
+++++.||+|||+|.|.+..+. ..|.|+|||.+.+ ++++||++.++++++. .+.....||+|. ..+...+..
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~-~~~~~~~~~ 116 (127)
T cd04022 38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE-KRGLFSRVR 116 (127)
T ss_pred eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEee-eCCCCCCcc
Confidence 9999999999999999998643 4599999999887 4899999999999997 566778999994 334333568
Q ss_pred ceEEEEEEEE
Q 004233 171 ASIQLELKFT 180 (766)
Q Consensus 171 g~i~l~l~~~ 180 (766)
|+|+|++.++
T Consensus 117 G~l~l~~~~~ 126 (127)
T cd04022 117 GEIGLKVYIT 126 (127)
T ss_pred EEEEEEEEEc
Confidence 9999999876
No 28
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=6e-16 Score=144.20 Aligned_cols=120 Identities=31% Similarity=0.468 Sum_probs=99.6
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-eeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~-~~~~~ 95 (766)
|.|+|+|++|++|+..+..+. .+||||++.+.+ ..+.+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k 40 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR 40 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence 789999999999996553321 289999999987 56689
Q ss_pred eccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEE-EEEccCCCCCCCCCCceE
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR-WYDIIAPSGSPPKPGASI 173 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~g~i 173 (766)
|++++++.+|.|||.|.|.+......|.|+|||.+..+ +++||.+.++|.++..+..... |..+ ...+ +..|+|
T Consensus 41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~-~~~~---k~~G~i 116 (124)
T cd04044 41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNL-LRNG---KPVGEL 116 (124)
T ss_pred eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhh-hcCC---ccceEE
Confidence 99999999999999999999865777999999999886 8999999999999986655543 4444 3433 467999
Q ss_pred EEEEEEEe
Q 004233 174 QLELKFTP 181 (766)
Q Consensus 174 ~l~l~~~~ 181 (766)
+++++|.|
T Consensus 117 ~~~l~~~p 124 (124)
T cd04044 117 NYDLRFFP 124 (124)
T ss_pred EEEEEeCC
Confidence 99999987
No 29
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.66 E-value=1.3e-15 Score=140.93 Aligned_cols=117 Identities=31% Similarity=0.542 Sum_probs=99.9
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
|.|.|+|++|++|+.++..+. +||||++.+.+.. .+|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T 37 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT 37 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence 789999999999998876654 9999999998755 699
Q ss_pred ccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l 175 (766)
++++++.||.|||+|.|.+......|.|+|||++..+ +++||++.+++.++..+. ..|+.|..+.. ..+..|+|.+
T Consensus 38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~-~~~~~G~i~l 114 (119)
T cd08377 38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKL-RTRAKGSILL 114 (119)
T ss_pred ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCC-CCceeeEEEE
Confidence 9999999999999999999776678999999999875 899999999999987553 57999954433 3357899999
Q ss_pred EEEE
Q 004233 176 ELKF 179 (766)
Q Consensus 176 ~l~~ 179 (766)
++.|
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 9876
No 30
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.66 E-value=9.3e-16 Score=142.17 Aligned_cols=113 Identities=27% Similarity=0.528 Sum_probs=96.7
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--eeeeee
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART 96 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--~~~~~T 96 (766)
|.|+|++|++|++.+..+. +||||++.+.+ ....||
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT 39 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT 39 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence 7899999999998776554 99999999953 355799
Q ss_pred ccccCCCCCeeeeeEEEeecCCC-ceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l 175 (766)
++++++.||+|||+|.|.+.... ..|.|+|||++.+++++||++.++++.+..+.....|++| .++ ..|+|.+
T Consensus 40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L-~~~-----~~g~l~~ 113 (119)
T cd04036 40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL-NPQ-----GKEELEV 113 (119)
T ss_pred ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEEC-CCC-----CCceEEE
Confidence 99999999999999999987653 3499999999988889999999999999988899999999 332 4688888
Q ss_pred EEEE
Q 004233 176 ELKF 179 (766)
Q Consensus 176 ~l~~ 179 (766)
++.+
T Consensus 114 ~~~~ 117 (119)
T cd04036 114 EFLL 117 (119)
T ss_pred EEEe
Confidence 7764
No 31
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.66 E-value=7.5e-16 Score=143.19 Aligned_cols=97 Identities=25% Similarity=0.450 Sum_probs=83.0
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCCCceeEEEeccceeccCCc-----ee
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGE-----LI 153 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~-----~~ 153 (766)
+||||++.+.+. ..||++++++.||+|||+|.|.+... ...|.|+|||++..++++||.+.++|+.+.... ..
T Consensus 17 ~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 95 (121)
T cd08378 17 NDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA 95 (121)
T ss_pred CCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence 999999999874 57999999999999999999998774 456999999999888999999999999986432 35
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004233 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (766)
Q Consensus 154 ~~~~~l~~~~~~~~~~~g~i~l~l~~ 179 (766)
..||+|....+ .+..|+|+|++.|
T Consensus 96 ~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 96 PQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred cceEEccCCCC--CccceEEEEEEEe
Confidence 68999965544 3578999999987
No 32
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.66 E-value=2e-15 Score=139.19 Aligned_cols=112 Identities=26% Similarity=0.387 Sum_probs=98.3
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~~ 98 (766)
|+|+|++|++|+.++..+. +||||++.+.+.. .+|++
T Consensus 2 ~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~v 38 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSKV 38 (116)
T ss_pred EEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eeccc
Confidence 7899999999998876554 9999999997754 69999
Q ss_pred ccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEEEE
Q 004233 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (766)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l~ 176 (766)
+++|.||.|||+|.|.+..+ ...|.|+|||++.++ +++||.+.++|.++..+...+.|++|. + ..|+|++.
T Consensus 39 ~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~-~------~~G~~~~~ 111 (116)
T cd08376 39 CSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELE-D------GEGSLLLL 111 (116)
T ss_pred ccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEcc-C------CCcEEEEE
Confidence 99999999999999998876 567999999999986 999999999999998888889999993 2 25999999
Q ss_pred EEEE
Q 004233 177 LKFT 180 (766)
Q Consensus 177 l~~~ 180 (766)
+.|+
T Consensus 112 ~~~~ 115 (116)
T cd08376 112 LTLT 115 (116)
T ss_pred EEec
Confidence 8875
No 33
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.65 E-value=1.6e-15 Score=143.24 Aligned_cols=127 Identities=24% Similarity=0.461 Sum_probs=102.5
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~ 94 (766)
+.|.|.|+|++|++|++.+..+.+ .|.. .....+||||++.+.++...
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~---~~~~-----------------------------~~~g~~dpyv~v~~~~~~~~ 49 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRH---AVPK-----------------------------KGSQLLDPYVSIDVDDTHIG 49 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhh---cccc-----------------------------cCccCcCcEEEEEECCEEEe
Confidence 568999999999999987753210 0000 00013899999999987778
Q ss_pred eeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccC--CceeEEEEEccCCCCCCCCCCc
Q 004233 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA 171 (766)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~g 171 (766)
+|++++++.+|.|||+|.|.+. +...|.|.|||++..+ +++||++.++|+++.. +.....|++| .+.|
T Consensus 50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L--------~~~G 120 (132)
T cd04014 50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDL--------EPQG 120 (132)
T ss_pred EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEc--------cCCc
Confidence 9999999999999999999996 4567999999998876 8999999999999886 5667899999 2469
Q ss_pred eEEEEEEEEec
Q 004233 172 SIQLELKFTPC 182 (766)
Q Consensus 172 ~i~l~l~~~~~ 182 (766)
+|++++.|...
T Consensus 121 ~l~l~~~~~~~ 131 (132)
T cd04014 121 KLHVKIELKGS 131 (132)
T ss_pred EEEEEEEEecC
Confidence 99999998764
No 34
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=9.6e-16 Score=144.89 Aligned_cols=120 Identities=21% Similarity=0.390 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe------
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------ 91 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~------ 91 (766)
.|.|+|++|++|+.++..+. +||||+|.+.+.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~ 38 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI 38 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence 38999999999998887665 999999999653
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCce------eEEEEEccCCCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAPSG 164 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~------~~~~~~l~~~~~ 164 (766)
...+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+.. ...||+|... .
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-~ 117 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-S 117 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-C
Confidence 246999999999999999999999876777999999999987 8999999999999875432 4589999533 2
Q ss_pred CCCCCCceEEEEEEEE
Q 004233 165 SPPKPGASIQLELKFT 180 (766)
Q Consensus 165 ~~~~~~g~i~l~l~~~ 180 (766)
...+..|+|+|++.|.
T Consensus 118 ~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 118 SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCcceeEEEEEEeeC
Confidence 2335789999999984
No 35
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.65 E-value=9.9e-16 Score=142.60 Aligned_cols=106 Identities=25% Similarity=0.486 Sum_probs=91.4
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC
Q 004233 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (766)
Q Consensus 11 ~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~ 90 (766)
.+.|..+.|.|+|++|++|+.++ .+. +||||+|.+..
T Consensus 7 ~l~y~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~~ 43 (122)
T cd08381 7 SISYKNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLLP 43 (122)
T ss_pred EEEEeCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEee
Confidence 45677899999999999999887 444 99999999942
Q ss_pred ----eeeeeeccccCCCCCeeeeeEEEee-cC---CCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 91 ----ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 91 ----~~~~~T~~~~~~~~P~w~e~~~~~~-~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
..+.||++++++.||+|||+|.|++ +. ....|.|+|||++.++ +++||++.++|.++..+.....||+|
T Consensus 44 ~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 44 DPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 3457999999999999999999997 32 3456999999999987 89999999999999877778899987
No 36
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.65 E-value=1.9e-15 Score=140.60 Aligned_cols=117 Identities=25% Similarity=0.512 Sum_probs=98.8
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~~ 98 (766)
|.|+|++|++|++++..+. +||||++.+.+..+.||++
T Consensus 2 l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~v 39 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTAT 39 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeeee
Confidence 7899999999999887665 9999999998776789999
Q ss_pred ccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCC-ceeEEEEEccCCCCCCCCCCceEEEE
Q 004233 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQLE 176 (766)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~g~i~l~ 176 (766)
++++.||+|||.|.|.+......|.|+|||++.++ +++||.+.++++.+..+ ...+.|++|... ....+..|+|.+.
T Consensus 40 ~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~-~~~~~~~G~i~l~ 118 (121)
T cd04054 40 VWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEV-DPDEEVQGEIHLE 118 (121)
T ss_pred EcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeee-CCCCccccEEEEE
Confidence 99999999999999999877678999999999987 89999999999888743 346789999432 2222457999888
Q ss_pred EE
Q 004233 177 LK 178 (766)
Q Consensus 177 l~ 178 (766)
++
T Consensus 119 ~~ 120 (121)
T cd04054 119 LS 120 (121)
T ss_pred EE
Confidence 75
No 37
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.64 E-value=5e-16 Score=141.84 Aligned_cols=100 Identities=18% Similarity=0.339 Sum_probs=84.7
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---e
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A 91 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---~ 91 (766)
..|.|+|+|++|++|+ + .+. +||||++.+.. .
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~------------------------------------------sDPYVKv~L~~~~k~ 46 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAG------------------------------------------CECYISGCVSVSEGQ 46 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCC------------------------------------------CCeEEEEEEcCCcCc
Confidence 3588999999999998 2 232 99999999943 2
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
.+.+|+++++|.||+|||+|.|.++... ..|.|+|||.|.++ +++||++.++++++..+...+.|.+|
T Consensus 47 ~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 47 KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 4669999999999999999999998753 45999999999998 99999999999998766667778654
No 38
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.64 E-value=2e-15 Score=149.57 Aligned_cols=145 Identities=23% Similarity=0.267 Sum_probs=110.1
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~ 320 (766)
.++++.++++|.+|+++|+|++|.|.++. . . ....|.++|.+|++|||+||||+ |.......
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~---~------~--~~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI---T------E--YGPVILDALLAAARRGVKVRILV-DEWSNTDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc---c------c--cchHHHHHHHHHHHCCCEEEEEE-cccccCCc------
Confidence 77899999999999999999999988631 0 0 12799999999999999999998 65433220
Q ss_pred CccccCcHHHHhhhcCC---CceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcc
Q 004233 321 GVMATHDEETKKFFKHS---SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (766)
Q Consensus 321 ~~~~~~~~~~~~~l~~~---gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r 397 (766)
.......+.|... |+++...+.... ...++|+|++|||++ ++++||.|+++..
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 0012345555544 788765432210 124699999999998 9999999999944
Q ss_pred cCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh--HHHHHHHHHHHHHhhh
Q 004233 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA 459 (766)
Q Consensus 398 ~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gp--av~dl~~~F~~~W~~~ 459 (766)
+ ..++|+.+.+.+| ++.++.+.|..+|+..
T Consensus 138 ~--------------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 L--------------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred h--------------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 4 2467999999999 7999999999999864
No 39
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.64 E-value=1.9e-15 Score=144.13 Aligned_cols=108 Identities=20% Similarity=0.394 Sum_probs=91.4
Q ss_pred EeeceEEEEEEEEeeCCCCCCC-cchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-
Q 004233 13 IYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (766)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~- 90 (766)
.|..|.|.|+|++|++|+.++. .+. +||||++.+..
T Consensus 25 ~y~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------------------sDPYVKv~Llp~ 62 (146)
T cd04028 25 YDKKGQLEVEVIRARGLVQKPGSKVL------------------------------------------PAPYVKVYLLEG 62 (146)
T ss_pred EeCCCEEEEEEEEeeCCCcccCCCCC------------------------------------------cCCeEEEEEECC
Confidence 6678999999999999987642 333 89999999932
Q ss_pred -e--eeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEE-EcCCCC-CceeEEEeccceeccCCceeEEEEEccCC
Q 004233 91 -A--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 91 -~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~-d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
. .+.||++++++.||+|||+|.|.+......|.|+|| |++.++ +++||.+.|+|+.+..+.....||+|...
T Consensus 63 ~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 63 KKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 2 367999999999999999999999866667999999 577776 89999999999999877788899999543
No 40
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.64 E-value=5.6e-16 Score=146.80 Aligned_cols=97 Identities=29% Similarity=0.576 Sum_probs=88.6
Q ss_pred eeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeee
Q 004233 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (766)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~ 93 (766)
.+.|.|+|+|++|.+|...|+.+. +||||.+++++++.
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~l 40 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQKL 40 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCeee
Confidence 356999999999999999888555 99999999999885
Q ss_pred eeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCcee
Q 004233 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (766)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~ 153 (766)
||+++++++||+|||.|+|.+..+...|+++|||+|.++ ||++|.++|+|..+......
T Consensus 41 -kT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 41 -KTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred -eeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 999999999999999999999999999999999999998 99999999999998755443
No 41
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.64 E-value=2.5e-15 Score=140.91 Aligned_cols=120 Identities=22% Similarity=0.421 Sum_probs=99.6
Q ss_pred eEEEEEEEEeeCCCCCCC--cchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004233 17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~ 94 (766)
|.|.|+|++|++|+..+. .+. +||||++.+..+. .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~ 37 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F 37 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence 789999999999998775 444 9999999997654 6
Q ss_pred eeccccCCCCCeeeeeEEEeecC-CCceEEEEEEEcCCCC-CceeEEEeccceeccC---CceeEEEEEccCCC-CCCCC
Q 004233 95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPS-GSPPK 168 (766)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~---~~~~~~~~~l~~~~-~~~~~ 168 (766)
+|++++++.+|.|||+|.|.+.. ....|.|+|||++..+ +++||.+.+++.++.. ......|++|.... ++...
T Consensus 38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~ 117 (128)
T cd04024 38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117 (128)
T ss_pred ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence 99999999999999999999987 4567999999999886 8999999999999872 34467899995442 22234
Q ss_pred CCceEEEEEEE
Q 004233 169 PGASIQLELKF 179 (766)
Q Consensus 169 ~~g~i~l~l~~ 179 (766)
..|+|+|++.|
T Consensus 118 ~~G~i~l~~~~ 128 (128)
T cd04024 118 VSGEIHLQFSW 128 (128)
T ss_pred ccceEEEEEEC
Confidence 68999999875
No 42
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.63 E-value=3.6e-15 Score=141.42 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=96.8
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
|.|.|+|++|++|++++..+. +||||++.++... .||
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~-~kT 51 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE-HKT 51 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-eec
Confidence 899999999999998886665 9999999997754 699
Q ss_pred ccccCCCCCeeeeeEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEeccceeccC-----CceeEEEEEccCCCCCCCCC
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSPPKP 169 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~-----~~~~~~~~~l~~~~~~~~~~ 169 (766)
++++++.||.|||+|.|.+..+. ..|.|+|||++.++ +++||.+.+++.++.. ......|..+ . .+.
T Consensus 52 ~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-~-----~~~ 125 (136)
T cd08375 52 KVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL-H-----EVP 125 (136)
T ss_pred cccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc-c-----ccc
Confidence 99999999999999999997654 45999999999887 8999999999999875 3344566665 1 146
Q ss_pred CceEEEEEEEE
Q 004233 170 GASIQLELKFT 180 (766)
Q Consensus 170 ~g~i~l~l~~~ 180 (766)
.|+|+|++.|.
T Consensus 126 ~g~i~l~~~~~ 136 (136)
T cd08375 126 TGEVVVKLDLQ 136 (136)
T ss_pred ceeEEEEEEeC
Confidence 79999999873
No 43
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.63 E-value=3e-15 Score=138.87 Aligned_cols=120 Identities=26% Similarity=0.446 Sum_probs=98.2
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
|.|.|+|++|++|+.++..... . -...+||||+|.+.+ ...+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~------------~------------------------~~g~~dPyv~v~~~~-~~~kT 43 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGG------------L------------------------VKGKSDPYVIVRVGA-QTFKS 43 (121)
T ss_pred CeEEEEEEEccCCccccccccc------------C------------------------CCCCcCCEEEEEECC-EeEEc
Confidence 6799999999999987743100 0 001289999999987 55799
Q ss_pred ccccCCCCCeeeeeEEEeecC-CCceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004233 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l 175 (766)
++++++.+|+|||+|.|.+.. ....|.|+|||++..++++||.+.+++.++..+.....|++|... ..|+|+|
T Consensus 44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 999999999999999999875 356799999999988889999999999999877778899999422 4699999
Q ss_pred EEEE
Q 004233 176 ELKF 179 (766)
Q Consensus 176 ~l~~ 179 (766)
+++|
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 8875
No 44
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.63 E-value=3e-15 Score=139.61 Aligned_cols=118 Identities=26% Similarity=0.430 Sum_probs=98.4
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~ 97 (766)
+|+|+|++|++|+.++..+. +||||+|.+.+.. .+|+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~ 37 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETS 37 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eece
Confidence 48999999999998876554 9999999997754 6999
Q ss_pred cccCCCCCeeeeeEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCC---CCCCCce
Q 004233 98 VLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGAS 172 (766)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~g~ 172 (766)
+++++.||.|||+|.|.+.... ..|.|+|||++.++ +++||.+.++|.++..+.....|+.|...... ..+..|.
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~ 117 (123)
T cd04025 38 VVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGS 117 (123)
T ss_pred eecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEE
Confidence 9999999999999999998764 56999999999887 89999999999999866667889999643322 2356788
Q ss_pred EEEEEE
Q 004233 173 IQLELK 178 (766)
Q Consensus 173 i~l~l~ 178 (766)
|.+.++
T Consensus 118 l~~~~~ 123 (123)
T cd04025 118 LRLKVR 123 (123)
T ss_pred EEEEeC
Confidence 888763
No 45
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.62 E-value=1.3e-15 Score=174.37 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=118.4
Q ss_pred CeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHH
Q 004233 212 SHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELL 291 (766)
Q Consensus 212 n~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL 291 (766)
..++++.+| |+. ..++.+..++++|.+|+++|+|++++|.|+ ..+.++|
T Consensus 329 ~~~q~~~sg--p~~-------------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd----------------~~l~~aL 377 (509)
T PRK12452 329 GAVQIVASG--PSS-------------DDKSIRNTLLAVMGSAKKSIWIATPYFIPD----------------QETLTLL 377 (509)
T ss_pred eEEEEEeCC--CCc-------------hhHHHHHHHHHHHHHhhhEEEEECCccCCC----------------HHHHHHH
Confidence 468888887 322 115789999999999999999999988885 6899999
Q ss_pred HHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEE
Q 004233 292 KYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCV 371 (766)
Q Consensus 292 ~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~ 371 (766)
+.||+|||+||||+ ++.+... .+........+.|.++||+++.+... .+|+|++
T Consensus 378 ~~Aa~rGV~Vrii~-p~~~D~~--------~~~~a~~~~~~~L~~aGv~I~~y~~~-----------------~lHaK~~ 431 (509)
T PRK12452 378 RLSAISGIDVRILY-PGKSDSI--------ISDQASQSYFTPLLKAGASIYSYKDG-----------------FMHAKIV 431 (509)
T ss_pred HHHHHcCCEEEEEc-CCCCChH--------HHHHHHHHHHHHHHHcCCEEEEecCC-----------------CeeeeEE
Confidence 99999999999997 6542211 11111235567788899999865321 2899999
Q ss_pred EEccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHH
Q 004233 372 LVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLIN 451 (766)
Q Consensus 372 VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpav~dl~~~ 451 (766)
|||++ ++++||+|++. |... ..|.+..+...++.|.+++..
T Consensus 432 ivD~~--------~a~vGS~Nld~-RS~~------------------------------~n~E~~~~i~~~~~~~~l~~~ 472 (509)
T PRK12452 432 LVDDK--------IATIGTANMDV-RSFE------------------------------LNYEIISVLYESETVHDIKRD 472 (509)
T ss_pred EECCC--------EEEEeCcccCH-hHhh------------------------------hhhhccEEEECHHHHHHHHHH
Confidence 99999 99999999988 4311 245577888888899999999
Q ss_pred HHHHHhhhc
Q 004233 452 FEQRWRKAT 460 (766)
Q Consensus 452 F~~~W~~~~ 460 (766)
|.++|..+.
T Consensus 473 f~~d~~~s~ 481 (509)
T PRK12452 473 FEDDFKHST 481 (509)
T ss_pred HHHHHHhCe
Confidence 999998754
No 46
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.62 E-value=2.6e-15 Score=138.68 Aligned_cols=100 Identities=22% Similarity=0.293 Sum_probs=85.1
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC-----C-e
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q-A 91 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~-----~-~ 91 (766)
.|+|+|++|++|+.++. +. +||||+|++- . .
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~ 37 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK 37 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence 38999999999997663 43 9999999982 2 2
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCC----ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEcc
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~ 160 (766)
.+.+|+++.++.||+|||+|.|.+.... ..|.|.|||+|..+ +++||++.+|++++..+.....|++|.
T Consensus 38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 3468999999999999999999997532 34999999999876 899999999999999888888999993
No 47
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.61 E-value=1.7e-14 Score=135.11 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=101.0
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~ 95 (766)
+..|+|+|++|++|+..+..+. +||||++.+.++. .+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k 38 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR 38 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence 3679999999999998876655 9999999998865 69
Q ss_pred eccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCC-CCCCCCCceEE
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS-GSPPKPGASIQ 174 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~g~i~ 174 (766)
|++++++.+|+|||+|.|.+..+...|.|+|||++..++++||.+.+++..+.. ....|++|.... ....+..|+|.
T Consensus 39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~ 116 (126)
T cd04046 39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTIS 116 (126)
T ss_pred eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEE
Confidence 999999999999999999988887789999999998889999999999987643 334677774221 12346789999
Q ss_pred EEEEEEec
Q 004233 175 LELKFTPC 182 (766)
Q Consensus 175 l~l~~~~~ 182 (766)
+++.+.+.
T Consensus 117 ~~~~~~~~ 124 (126)
T cd04046 117 VKVTSSDD 124 (126)
T ss_pred EEEEEccc
Confidence 99987764
No 48
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.59 E-value=3.9e-15 Score=137.89 Aligned_cols=105 Identities=18% Similarity=0.346 Sum_probs=89.3
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-
Q 004233 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (766)
Q Consensus 12 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~- 90 (766)
..+.++.|.|+|++|++|+.++ .+. +||||++.+..
T Consensus 7 ~~~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~p~ 43 (119)
T cd08685 7 IEGQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLSPD 43 (119)
T ss_pred EEEcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEEeC
Confidence 4567899999999999999876 333 99999999943
Q ss_pred ---eeeeeeccccCCCCCeeeeeEEEeecCCC--ceEEEEEEEcCCCC--CceeEEEeccceeccCCceeEEEEEc
Q 004233 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 91 ---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~l~~~v~d~~~~~--~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
..+.||++++++.||+|||+|.|.+.... ..|.|+|||.+... +++||.+.|+|.++..+.....||.|
T Consensus 44 ~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 44 KEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 34569999999999999999999987643 45889999998764 68999999999999877778899975
No 49
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=1.6e-14 Score=135.40 Aligned_cols=103 Identities=35% Similarity=0.593 Sum_probs=89.9
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEE
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~ 155 (766)
+||||+|.+.+.. .+|++++++.+|+|||+|.|++..+ ...|.|+|||++..+ +++||++.++++++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 9999999998755 6999999999999999999999764 456999999999886 8999999999999998888889
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEEecCCC
Q 004233 156 WYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (766)
Q Consensus 156 ~~~l~~~~~~~~~~~g~i~l~l~~~~~~~~ 185 (766)
|++|....+.+ ..|+|.+++.|.|...+
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99996665533 46899999999998654
No 50
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.58 E-value=1.1e-14 Score=135.98 Aligned_cols=103 Identities=33% Similarity=0.540 Sum_probs=90.3
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--ee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--~~ 92 (766)
..+.|.|+|++|++|+.++..+. +||||++.+.+ ..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKK 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45899999999999998876554 99999999843 34
Q ss_pred eeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
+.||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.++|+++..+.....|++|
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 67999999999999999999998763 356999999999987 89999999999999888888999998
No 51
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.58 E-value=8.9e-15 Score=136.59 Aligned_cols=102 Identities=26% Similarity=0.499 Sum_probs=90.1
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEE--CCeee
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQATV 93 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~--~~~~~ 93 (766)
.|.|.|+|++|++|+.++..+. +||||++.+ ....+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~~ 52 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSNT 52 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCCc
Confidence 4789999999999998886554 999999999 33456
Q ss_pred eeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
.||++++++.+|+|||+|.|.+... ...|.|+|||++.++ +++||.+.++|+++..++....|++|
T Consensus 53 ~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 53 KQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred EeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 7999999999999999999998764 346999999999887 89999999999999877788899998
No 52
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=162.11 Aligned_cols=147 Identities=17% Similarity=0.157 Sum_probs=104.1
Q ss_pred CceEeEEEeeccCCCCCCCCCCcccccccccccccCccchhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCC
Q 004233 520 ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA 599 (766)
Q Consensus 520 ~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~ 599 (766)
..+.++++.|+|.+- .|+. . -.+.+++++++|.+||++|+|++|||+++...
T Consensus 4 ~~~~~~~vesiP~~~--~~~~--------------~---~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~--------- 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK--------------V---YLSTFNFWREILSNTTKTLDISSFYWSLSDEV--------- 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCC--------------C---CCCHHHHHHHHHHhhCcEEEEEeEEEecCccc---------
Confidence 356789999986652 1221 0 25789999999999999999999999953110
Q ss_pred CCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEee
Q 004233 600 DNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYC 679 (766)
Q Consensus 600 ~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~ 679 (766)
....+..+..+|+++++ |||+|+||++.. +.+. . ..+.|+++|+++ ..|.
T Consensus 56 ~~~~G~~i~~aL~~aA~--rGV~VRIL~d~~-----~~~~----------~-------~~~~L~~aGv~v------~~~~ 105 (424)
T PHA02820 56 GTNFGTMILNEIIQLPK--RGVRVRIAVNKS-----NKPL----------K-------DVELLQMAGVEV------RYID 105 (424)
T ss_pred cchhHHHHHHHHHHHHH--CCCEEEEEECCC-----CCch----------h-------hHHHHHhCCCEE------EEEe
Confidence 01114567777777766 559999999942 1110 1 146688899875 1232
Q ss_pred cCCccCCccccccCCCCCccccccCCccceEEeeeEEEEeeeEeEEccCCcCcccCCCCCcccceeeeeC
Q 004233 680 LGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQ 749 (766)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~ 749 (766)
... + ..+++|+|++|||+++++|||+|||+||+.. +.|+++.+.+
T Consensus 106 ~~~---------------------~--~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~--n~E~gv~i~~ 150 (424)
T PHA02820 106 ITN---------------------I--LGGVLHTKFWISDNTHIYLGSANMDWRSLTQ--VKELGIAIFN 150 (424)
T ss_pred cCC---------------------C--CcccceeeEEEECCCEEEEeCCcCChhhhhh--CCceEEEEec
Confidence 100 0 1358999999999999999999999999984 5899999875
No 53
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.58 E-value=9.7e-15 Score=161.23 Aligned_cols=143 Identities=19% Similarity=0.192 Sum_probs=101.8
Q ss_pred hHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHH-hcCCEEEEEEecCCCccCccccccCC
Q 004233 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLVWDDKTSHDKLGVKTPG 321 (766)
Q Consensus 243 ~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa-~rGV~VrILv~D~~gs~~~~~~~~~~ 321 (766)
..++++++|.+|+++|+|++|+|.|+.. .+. .......|.++|.+|| +|||+||||+ |..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~~---~d~---~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVIR---EDD---KTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEEe---eCC---CCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc-------
Confidence 4689999999999999999999987521 110 0001258999999885 9999999997 87654220
Q ss_pred ccccCcHHHHhhhcCCCce----EEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcc
Q 004233 322 VMATHDEETKKFFKHSSVN----CVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (766)
Q Consensus 322 ~~~~~~~~~~~~l~~~gi~----v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r 397 (766)
......+.|.++|++ ++.+ .+.+|+|++|||++ +|++||+|+++.+
T Consensus 283 ----~~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s 332 (369)
T PHA03003 283 ----YSMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDDE--------FAHITSANFDGTH 332 (369)
T ss_pred ----hhhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcCC--------EEEEeccccCchh
Confidence 012456778888855 2211 11279999999999 9999999998844
Q ss_pred cCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhc
Q 004233 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (766)
Q Consensus 398 ~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpav~dl~~~F~~~W~~~~ 460 (766)
+.. ..+.++ ....|++|.+++..|.++|+...
T Consensus 333 ~~~------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~~ 364 (369)
T PHA03003 333 YLH------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSSY 364 (369)
T ss_pred hcc------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCcc
Confidence 421 122332 24679999999999999998643
No 54
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.58 E-value=6.1e-15 Score=137.97 Aligned_cols=101 Identities=23% Similarity=0.411 Sum_probs=87.1
Q ss_pred eEEEEEEEEeeCCCCCCCc-chhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004233 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----~ 91 (766)
+.|.|+|++|++|+.++.. +. +||||++.+.. .
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~------------------------------------------~dpyVkv~l~p~~~~~ 52 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQR------------------------------------------SDPYVKTYLLPDKSNR 52 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCC------------------------------------------CCcEEEEEEEcCCCcc
Confidence 5899999999999988753 33 99999999932 2
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
.+.||++++++.||+|||+|.|++... ...|.|+|||++.++ +++||.+.++|.++........||+|
T Consensus 53 ~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 53 GKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred ccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 346999999999999999999998753 356999999999887 89999999999999877777889987
No 55
>PRK13912 nuclease NucT; Provisional
Probab=99.58 E-value=3.1e-14 Score=141.22 Aligned_cols=141 Identities=16% Similarity=0.263 Sum_probs=100.7
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~ 320 (766)
.+.++.++++|++|+++|+|+.|.|.. ..+.++|.+|++|||+||||+ |+.++...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 467889999999999999999998754 589999999999999999996 88754321
Q ss_pred CccccCcHHHHhhhc-CCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccC
Q 004233 321 GVMATHDEETKKFFK-HSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (766)
Q Consensus 321 ~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d 399 (766)
......++. ..++++.......... . .....+|+|++|||++ ++++||.|++...+.
T Consensus 88 ------~~~~~~~l~~~~~~~~~~~~~~~~~~-~-------~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~ 145 (177)
T PRK13912 88 ------DQSTIGYLDKYPNIKVCLLKGLKAKN-G-------KYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE 145 (177)
T ss_pred ------chhHHHHHHhCCCceEEEecCccccC-c-------ccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence 011122222 2456655421111100 0 1123589999999998 999999999984431
Q ss_pred CCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHHhhh
Q 004233 400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWRKA 459 (766)
Q Consensus 400 ~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpa-v~dl~~~F~~~W~~~ 459 (766)
..+++.+.+..|. +.++.+.|.+.|...
T Consensus 146 --------------------------------~N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 --------------------------------NNYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred --------------------------------cCCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 1246778888884 588999999999764
No 56
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.57 E-value=1.2e-14 Score=135.86 Aligned_cols=103 Identities=22% Similarity=0.398 Sum_probs=88.5
Q ss_pred eceEEEEEEEEeeCCCCCCCc-chhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---
Q 004233 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--- 90 (766)
..|.|.|+|++|++|+.++.. +. +||||+|.+..
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyVkv~l~p~~~ 50 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKR------------------------------------------SNPYVKTYLLPDKS 50 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCC------------------------------------------CCcEEEEEEEcCCc
Confidence 468899999999999977642 22 99999999932
Q ss_pred -eeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
..+.||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.++|..+........|++|
T Consensus 51 ~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 51 RQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred cccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 3356999999999999999999998763 446999999999887 89999999999999988888999997
No 57
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.57 E-value=1.2e-14 Score=132.73 Aligned_cols=100 Identities=32% Similarity=0.540 Sum_probs=86.5
Q ss_pred EEEEEEEeeCCCCCCC-cchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004233 19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~ 97 (766)
|.|+|++|++|+.++. .+. +||||++.+++ .+.||+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~-~~~kT~ 37 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL------------------------------------------TDAFVEVKFGS-TTYKTD 37 (110)
T ss_pred CEEEEEEEECCCccccCCCC------------------------------------------CCceEEEEECC-eeEecc
Confidence 6899999999998774 232 99999999987 557999
Q ss_pred cccCCCCCee-eeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccC---CceeEEEEEccC
Q 004233 98 VLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA 161 (766)
Q Consensus 98 ~~~~~~~P~w-~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~---~~~~~~~~~l~~ 161 (766)
+++++.||.| ||+|.|.+..+ ...|.|+|||++.++ +++||++.+++..+.. +..++.||+|+.
T Consensus 38 v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 38 VVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999 99999999875 356999999999987 8999999999999975 446889999853
No 58
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.56 E-value=5.6e-14 Score=131.50 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=95.8
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--eeeee
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR 95 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--~~~~~ 95 (766)
.|.|+|++|++|+.++..+. +||||++.+.+ ....|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k 39 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK 39 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence 58999999999998776554 99999999864 34679
Q ss_pred eccccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCC-CceeEEEeccceeccC---CceeEEEEEccCCCCCCCCCC
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG 170 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~---~~~~~~~~~l~~~~~~~~~~~ 170 (766)
|++++++.+|.|||+|.|.+..+ ...|.|+|||++..+ +++||++.++|..+.. +.....|++| . +.
T Consensus 40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l-~-------~~ 111 (126)
T cd04043 40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-D-------TQ 111 (126)
T ss_pred ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEc-C-------CC
Confidence 99999999999999999999885 456999999999886 8999999999987643 3456789999 2 35
Q ss_pred ceEEEEEEEEec
Q 004233 171 ASIQLELKFTPC 182 (766)
Q Consensus 171 g~i~l~l~~~~~ 182 (766)
|+|.+.+.+...
T Consensus 112 g~i~l~~~~~~~ 123 (126)
T cd04043 112 GRLLLRVSMEGE 123 (126)
T ss_pred CeEEEEEEEeee
Confidence 889988887654
No 59
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.56 E-value=2.4e-14 Score=129.62 Aligned_cols=97 Identities=26% Similarity=0.493 Sum_probs=84.7
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~~ 98 (766)
|.|+|++|++|+..+..+. +||||++.++++ ..||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~-~~kT~v 38 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGKT-TQKSKV 38 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECCE-EEeCcc
Confidence 7899999999998775444 999999999884 569999
Q ss_pred ccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCCCceeEEEeccceeccCC--ceeEEEEEcc
Q 004233 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--ELISRWYDII 160 (766)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~--~~~~~~~~l~ 160 (766)
++++.+|.|||+|.|.+..+ ...|.|+|+|.+. +++||++.++|.++... .....||+|.
T Consensus 39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 99999999999999999985 4569999999887 89999999999998743 3678999993
No 60
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.55 E-value=5.8e-14 Score=133.19 Aligned_cols=118 Identities=19% Similarity=0.359 Sum_probs=95.9
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~ 97 (766)
.|+|+|++|++|+.+|..+. +||||+|.+.+.. .||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~ 38 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE 38 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence 58999999999998887665 9999999998754 6999
Q ss_pred cccCCCCCeeeeeEEEeecCC----------CceEEEEEEEcCCCC-CceeEEEec-cceecc---CCceeEEEEEccCC
Q 004233 98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIA---TGELISRWYDIIAP 162 (766)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~----------~~~l~~~v~d~~~~~-~~~iG~~~~-~l~~~~---~~~~~~~~~~l~~~ 162 (766)
+++++.||.|||+|.|.+... ...|.|+|||++..+ +++||++.+ ++..+. .+.....|++|. .
T Consensus 39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~ 117 (135)
T cd04017 39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K 117 (135)
T ss_pred eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence 999999999999999985321 235899999999987 899999986 554444 245677999994 3
Q ss_pred CCCCCCCCceEEEEEEEEec
Q 004233 163 SGSPPKPGASIQLELKFTPC 182 (766)
Q Consensus 163 ~~~~~~~~g~i~l~l~~~~~ 182 (766)
.+ ...|+|++++++.+.
T Consensus 118 ~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 118 GG---QSAGELLAAFELIEV 134 (135)
T ss_pred CC---CchhheeEEeEEEEe
Confidence 33 368999999999875
No 61
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=2.5e-14 Score=132.76 Aligned_cols=104 Identities=27% Similarity=0.457 Sum_probs=92.9
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
|.|.|+|++|++|++.+..+. +||||+|.+.+..+.+|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT 38 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT 38 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence 689999999999998876554 99999999987777899
Q ss_pred ccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCC
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~ 163 (766)
++++++.+|.|||+|.|++..+...|.|+|||++.++ +++||.+.+++.++..+ ..+.||.++..+
T Consensus 39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999999888788999999999987 89999999999999865 678899987654
No 62
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.55 E-value=1.8e-14 Score=135.21 Aligned_cols=102 Identities=23% Similarity=0.346 Sum_probs=86.4
Q ss_pred ceEEEEEEEEeeCCCCCCCc-chhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004233 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---- 90 (766)
.+.|.|+|++|++|+.++.. +. +||||++.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~------------------------------------------~dpYVkv~llp~~~~ 51 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK------------------------------------------CHPYVKVCLLPDKSH 51 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence 48899999999999987753 33 99999999932
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccC---CceeEEEEEc
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDI 159 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~---~~~~~~~~~l 159 (766)
....||++++++.||+|||+|.|++... ...|.|.|||.+.++ +++||.+.|+|.++.. +.....||+|
T Consensus 52 ~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 52 NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 2356999999999999999999998764 456999999999887 8999999999999864 3467789987
No 63
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.55 E-value=3e-14 Score=132.89 Aligned_cols=116 Identities=25% Similarity=0.376 Sum_probs=93.9
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~~ 98 (766)
|+|+|++|++|+.++..+. +||||++.+.+..+.||++
T Consensus 2 l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~v 39 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTDV 39 (123)
T ss_pred eEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEccE
Confidence 7899999999998876665 9999999997556679999
Q ss_pred ccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC---CceeEEEeccceeccCCc-eeEEEEEccCCCCC-CCCCCceE
Q 004233 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS-PPKPGASI 173 (766)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~---~~~iG~~~~~l~~~~~~~-~~~~~~~l~~~~~~-~~~~~g~i 173 (766)
++++.||.|||+|.|.+.. ...|.|+|||++.++ +++||++.+++.++.... ....|++|...... .....|+|
T Consensus 40 ~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v 118 (123)
T cd08382 40 AKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKI 118 (123)
T ss_pred EcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEE
Confidence 9999999999999999976 667999999999875 479999999999987433 34679998433221 12347888
Q ss_pred EEEE
Q 004233 174 QLEL 177 (766)
Q Consensus 174 ~l~l 177 (766)
.+++
T Consensus 119 ~~~~ 122 (123)
T cd08382 119 VVSL 122 (123)
T ss_pred EEEe
Confidence 8776
No 64
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.55 E-value=4e-14 Score=132.81 Aligned_cols=114 Identities=25% Similarity=0.492 Sum_probs=94.6
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~ 97 (766)
.|+|+|++|++|+.+|..+. +||||+|.+.+. ..+|+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~-~~kT~ 38 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKT-KKRTK 38 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCE-eeecc
Confidence 58999999999998886654 999999999764 46999
Q ss_pred cccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCC------------CCceeEEEeccceeccCCceeEEEEEccCCCCC
Q 004233 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (766)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~------------~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~ 165 (766)
+++++.+|.|||+|.|.+..+...|.|+|||+|.. ++++||.+.+++.++.. ....|+.|... +.
T Consensus 39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~-~~ 115 (127)
T cd04027 39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKR-TD 115 (127)
T ss_pred eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccC-CC
Confidence 99999999999999999877666799999999852 38999999999998753 34689999543 34
Q ss_pred CCCCCceEEEEE
Q 004233 166 PPKPGASIQLEL 177 (766)
Q Consensus 166 ~~~~~g~i~l~l 177 (766)
..+..|+|.|++
T Consensus 116 ~~~~~G~i~~~~ 127 (127)
T cd04027 116 KSAVSGAIRLHI 127 (127)
T ss_pred CCcEeEEEEEEC
Confidence 445689998874
No 65
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.55 E-value=7e-14 Score=134.48 Aligned_cols=98 Identities=19% Similarity=0.397 Sum_probs=82.2
Q ss_pred CCcEEEEEE----CCeeeeeeccccCCCCCeeeeeEEEeecCC---------CceEEEEEEEcCCC--CCceeEEEeccc
Q 004233 80 SDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF--GAQIIGTAAIPA 144 (766)
Q Consensus 80 ~dpyv~~~~----~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~---------~~~l~~~v~d~~~~--~~~~iG~~~~~l 144 (766)
+||||++++ ......||+++++|+||+|||+|.|.+... ...|.|+|||.+.+ +|++||++.++|
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 999999998 234567999999999999999999999765 24599999999986 499999999999
Q ss_pred eeccCCceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 004233 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (766)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l~l~~~ 180 (766)
..+........|++|+.. .+ ..+|.|+++++..
T Consensus 105 ~~l~~~~~~~~~~~L~~~-~k--~~Gg~l~v~ir~r 137 (155)
T cd08690 105 EPLETKCEIHESVDLMDG-RK--ATGGKLEVKVRLR 137 (155)
T ss_pred ccccccCcceEEEEhhhC-CC--CcCCEEEEEEEec
Confidence 999877777889998532 22 3589999999864
No 66
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.55 E-value=3.6e-14 Score=130.90 Aligned_cols=97 Identities=21% Similarity=0.329 Sum_probs=84.6
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
+.|.|+|++|++|+.++ ..||||+|.+++++ .+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---------------------------------------------~~dPYV~Ik~g~~k-~kT 35 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---------------------------------------------KFNTYVTLKVQNVK-STT 35 (127)
T ss_pred ceEEEEEEEeeCCCCCC---------------------------------------------CCCCeEEEEECCEE-eEe
Confidence 68999999999997533 17899999998855 699
Q ss_pred ccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEeccceeccCCcee--EEEEEcc
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII 160 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~--~~~~~l~ 160 (766)
++.++ .||.|||.|.|.+......|.|+|||+|.++|++||++.|+|+++..+... ..||+|.
T Consensus 36 ~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 36 IAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 99988 499999999999988877799999999988899999999999999865544 6899994
No 67
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.55 E-value=2.1e-14 Score=133.71 Aligned_cols=102 Identities=24% Similarity=0.485 Sum_probs=85.7
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C---
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--- 90 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~--- 90 (766)
.+.|.|+|++|++|+.++..+. +||||++.+- .
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~------------------------------------------~dpyVKv~Llp~~~~~ 50 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN------------------------------------------SKVYVRVALLPCSSST 50 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC------------------------------------------CCeEEEEEEccCCCCC
Confidence 4689999999999998764333 9999999983 2
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCC-ceeEEEEEc
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDI 159 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~-~~~~~~~~l 159 (766)
....||++++++.||+|||+|.|++... ...|.|+|||.+.++ +++||.+.|+|+++... +....||+|
T Consensus 51 ~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 51 SCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 2367999999999999999999998764 456999999999887 89999999999999643 457789875
No 68
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.54 E-value=3.5e-14 Score=136.20 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=69.8
Q ss_pred CCcEEEEEECCe----eeeeeccccCCCCCeeeeeEEEeecC----------------CCceEEEEEEEcCCCC-CceeE
Q 004233 80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG 138 (766)
Q Consensus 80 ~dpyv~~~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~~----------------~~~~l~~~v~d~~~~~-~~~iG 138 (766)
+||||+|.+... ...||++++++.||+|||+|.|.+.. ....|.|.|||++..+ +++||
T Consensus 19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG 98 (148)
T cd04010 19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG 98 (148)
T ss_pred CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence 999999999541 34699999999999999999999851 1235999999999886 89999
Q ss_pred EEeccceeccCC-ceeEEEEEccCC
Q 004233 139 TAAIPAHTIATG-ELISRWYDIIAP 162 (766)
Q Consensus 139 ~~~~~l~~~~~~-~~~~~~~~l~~~ 162 (766)
++.|++..+..+ .....||+|...
T Consensus 99 ~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 99 EVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEecccccccCCcCcceeecCCc
Confidence 999999999866 567889999544
No 69
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.54 E-value=2.5e-14 Score=133.69 Aligned_cols=113 Identities=26% Similarity=0.437 Sum_probs=94.2
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~ 97 (766)
+|+|+|++|++|+..+..+. +||||+|.+.+....+|+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~ 38 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP 38 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence 48999999999998775544 999999999874456999
Q ss_pred ccc-CCCCCeeeeeEEEeecCC-----CceEEEEEEEcCCCC-CceeEEEeccceeccCCce-----eEEEEEccCCCCC
Q 004233 98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----ISRWYDIIAPSGS 165 (766)
Q Consensus 98 ~~~-~~~~P~w~e~~~~~~~~~-----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~-----~~~~~~l~~~~~~ 165 (766)
+.. ++.+|.|||.|.|.+..+ ...|.|+|||++.++ +++||.+.++|.++..+.. ...||.|..++|
T Consensus 39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g- 117 (125)
T cd04051 39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG- 117 (125)
T ss_pred cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-
Confidence 986 589999999999999887 467999999999866 8999999999999985443 468999977665
Q ss_pred CCCCCceEEE
Q 004233 166 PPKPGASIQL 175 (766)
Q Consensus 166 ~~~~~g~i~l 175 (766)
+..|.|.+
T Consensus 118 --~~~G~~~~ 125 (125)
T cd04051 118 --KPQGVLNF 125 (125)
T ss_pred --CcCeEEeC
Confidence 46788764
No 70
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.53 E-value=3.9e-14 Score=128.89 Aligned_cols=96 Identities=21% Similarity=0.368 Sum_probs=79.9
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
|.|.|+|++|++|+..+.+++ ....+||||+|+++.. +.||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~--------------------------------------~~~~~DPYv~v~~~~~-~~kT 41 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR--------------------------------------TGFDMDPFVIISFGRR-VFRT 41 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC--------------------------------------CCCccCceEEEEECCE-eEee
Confidence 789999999999998764321 0012899999999764 4699
Q ss_pred ccccCCCCCeeeeeEEEeecCCC--ceEEEEEEEcCCCC-CceeEEEeccceeccCCc
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~--~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~ 151 (766)
++++++.||+|||+|.|++.... ..|.|+|||++.++ +++||++.++|+++..+.
T Consensus 42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 99999999999999999987643 35999999999987 999999999999987543
No 71
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.53 E-value=6.7e-14 Score=131.11 Aligned_cols=101 Identities=27% Similarity=0.537 Sum_probs=87.8
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----ee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----~~ 92 (766)
+.|.|+|++|++|+.++..+. +||||+|.+.. ..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 53 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLLPDKSKST 53 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEEcCCCCCc
Confidence 889999999999998876554 99999999842 34
Q ss_pred eeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCC--C-CceeEEEeccceeccCCceeEEEEEc
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~--~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
..||++++++.||+|||+|.|.+... ...|.|.|||.+.+ + +++||.+.++|.++..+.....||+|
T Consensus 54 ~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 54 RRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred eEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 57999999999999999999998654 35699999999875 4 89999999999999877788899987
No 72
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.53 E-value=2.4e-14 Score=131.03 Aligned_cols=98 Identities=28% Similarity=0.465 Sum_probs=83.6
Q ss_pred eEEEEEEEEeeCCCCCCCc-chhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--eee
Q 004233 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--~~~ 93 (766)
|.|.|+|++|++|+.++.. +. +||||+|.+.. ...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~ 38 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL 38 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence 7899999999999988765 44 99999999843 345
Q ss_pred eeeccccCCCCCeeeeeEEEeecCC----CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
.+|++++++.||+|||+|.|.+..+ ...|.|+|||+|.++ +++||++.+++.++. ....|+++
T Consensus 39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~ 106 (111)
T cd04041 39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGR 106 (111)
T ss_pred EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCcc
Confidence 7999999999999999999988764 356999999999987 899999999999987 23467766
No 73
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.52 E-value=5.6e-14 Score=131.21 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=84.4
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----~ 91 (766)
.+.|.|+|++|++|+.++..+. +||||+|.+.+ .
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 52 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEK 52 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCcc
Confidence 3789999999999998876554 99999999954 3
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecC----CCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
.+.||++++++.+|+|||+|.|.+.. ....|.|+|||++.++ +++||++.++|++.. ......||+|
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 45799999999999999999999654 2456999999999887 899999999999843 2334689987
No 74
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.52 E-value=5.7e-14 Score=130.76 Aligned_cols=103 Identities=29% Similarity=0.521 Sum_probs=87.6
Q ss_pred eceEEEEEEEEeeCCCCCC-CcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---
Q 004233 15 LHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--- 90 (766)
-.+.|.|+|++|++|+.++ ..+. +||||+|.+..
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~ 49 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKR------------------------------------------SNPYVKVYLLPDKS 49 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCC------------------------------------------CCcEEEEEEecCCC
Confidence 3589999999999999876 3333 99999999832
Q ss_pred -eeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
....||++++++.+|+|||+|.|.+... ...|.|+|||++.++ +++||.+.++|.++..+.....||+|
T Consensus 50 ~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 50 KQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred cCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 1457999999999999999999998764 346999999999887 89999999999999877778899986
No 75
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.52 E-value=1.7e-13 Score=126.38 Aligned_cols=96 Identities=26% Similarity=0.479 Sum_probs=75.5
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEE
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~ 155 (766)
+||||.+.+.+..+.+|+++++ .+|.|||+|.|.+... ...|.|.+||.+... +.++|.+. +..+..+...+.
T Consensus 18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~--l~~~~~~~~~~~ 94 (117)
T cd08383 18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVA--LSKLDLGQGKDE 94 (117)
T ss_pred CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEE--ecCcCCCCccee
Confidence 9999999998877789999999 9999999999999874 345888888887664 56677655 445555677889
Q ss_pred EEEccCCCCCCCCCCceEEEEEEE
Q 004233 156 WYDIIAPSGSPPKPGASIQLELKF 179 (766)
Q Consensus 156 ~~~l~~~~~~~~~~~g~i~l~l~~ 179 (766)
|++|....+ ..+..|+|+|+++|
T Consensus 95 w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 95 WFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred EEECccCCC-CCCcCceEEEEEEC
Confidence 999954433 23568999999986
No 76
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=1.3e-13 Score=126.87 Aligned_cols=111 Identities=27% Similarity=0.449 Sum_probs=93.3
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~~ 98 (766)
|+|+|++|++|+..+..+. +||||+|.+.+....+|++
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v 38 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT 38 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence 5799999999998775444 8999999997766689999
Q ss_pred ccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEE
Q 004233 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (766)
Q Consensus 99 ~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~ 174 (766)
+.++.+|.|||+|.|.+... ...+.|+|||++..+ +++||++.+++.++..+.....|++|....+ ...|.|.
T Consensus 39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~---~~~~~~~ 113 (115)
T cd04040 39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG---GKLGAVF 113 (115)
T ss_pred ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC---ccCceEE
Confidence 99999999999999998864 456999999999886 8999999999999988878889999954433 2355554
No 77
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.51 E-value=1.2e-13 Score=129.78 Aligned_cols=102 Identities=27% Similarity=0.401 Sum_probs=84.8
Q ss_pred ceEEEEEEEEeeCCCCCCCc-chhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004233 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~~ 92 (766)
.+.|.|+|++|++|+.++.. +. +||||++.+. ...
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyV~v~l~~~~~~ 52 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGT------------------------------------------SDPYVKLQLLPEKEH 52 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCC------------------------------------------cCCEEEEEEeCCcCc
Confidence 46899999999999987754 32 9999999984 234
Q ss_pred eeeeccccCCCCCeeeeeEEEe-ecC---CCceEEEEEEEcCCCC-CceeEEEeccceeccCC--ceeEEEEEc
Q 004233 93 VARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI 159 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~--~~~~~~~~l 159 (766)
+.||++++++.||+|||+|.|. +.. ....|.|+|||+|.++ +++||++.++|.++... +....|.+|
T Consensus 53 ~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 53 KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred eeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 5699999999999999999994 442 2346999999999887 89999999999999754 667889887
No 78
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.51 E-value=1e-13 Score=129.50 Aligned_cols=102 Identities=30% Similarity=0.473 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Ceee
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV 93 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~~~ 93 (766)
.+.|.|+|++|++|+.++..+. +||||++.+. ....
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 52 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHK 52 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcc
Confidence 4689999999999998776554 9999999993 3455
Q ss_pred eeeccccCCCCCeeeeeEEEeecCC----CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
.+|++++++.+|+|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+.....|++|
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 7999999999999999999985322 345999999999887 89999999999999988888999998
No 79
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=8.7e-14 Score=133.76 Aligned_cols=116 Identities=30% Similarity=0.405 Sum_probs=86.2
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T~ 97 (766)
.|+|+|++|++||.+|..+. .+.+. ..+ |.....+||||+|.+.+++ .||+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~--~~~------------------------~~~~~~~DPYV~V~~~g~~-~kT~ 51 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKK--AFL------------------------GEKKELVDPYVEVSFAGQK-VKTS 51 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--cccee--ccc------------------------cCCCCCcCcEEEEEECCEe-eecc
Confidence 37899999999999985331 00000 111 1122248999999998876 4999
Q ss_pred cccCCCCCeeeeeEEEeecCC--CceEEEEEEEcCCCC-CceeEEEeccceeccCCce-------eEEEEEccCC
Q 004233 98 VLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-------ISRWYDIIAP 162 (766)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~-------~~~~~~l~~~ 162 (766)
+++++.||+|||+|.|++..+ ...|.|+|||+|..+ +++||++.+++.++...+. -..|+.+..+
T Consensus 52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999999999999997644 456999999999985 9999999999999875321 2356666433
No 80
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.49 E-value=2.3e-13 Score=127.10 Aligned_cols=100 Identities=22% Similarity=0.390 Sum_probs=86.0
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Ceeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATVA 94 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~~~~ 94 (766)
+.|.|+|++|++|+.++..+. +||||++.+. .....
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~llp~~~~~~ 53 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLLPSKKQRA 53 (124)
T ss_pred CEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEccCCccee
Confidence 789999999999998875443 8999998872 24557
Q ss_pred eeccccCCCCCeeeeeEEEe-ecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 95 RTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
||++.++ .||+|||+|.|+ +... ...|.|+|||++.++ +++||.+.|+|+++..+.....|++|
T Consensus 54 kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 54 KTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 9999988 999999999998 5542 456999999999887 99999999999999888888899998
No 81
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.49 E-value=1.9e-13 Score=125.16 Aligned_cols=100 Identities=20% Similarity=0.377 Sum_probs=85.7
Q ss_pred CCCCCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCCC-ceEEEEEEEcCCCCCceeEEEeccceeccC-CceeE
Q 004233 77 IITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GELIS 154 (766)
Q Consensus 77 ~~~~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~-~~~~~ 154 (766)
+..+||||+|.++++...+|++++++.||+|||+|.|.+.... ..|.|.|+|++.+++++||.+.++|.++.. +....
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~ 89 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQ 89 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccc
Confidence 3458999999998877789999999999999999999998753 559999999998889999999999999853 34567
Q ss_pred EEEEccCCCCCCCCCCceEEEEEEEEec
Q 004233 155 RWYDIIAPSGSPPKPGASIQLELKFTPC 182 (766)
Q Consensus 155 ~~~~l~~~~~~~~~~~g~i~l~l~~~~~ 182 (766)
.|++|.. ...|+|++++.|.|+
T Consensus 90 ~w~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 90 QWFPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred eeEECCC------CCCCEEEEEEEEecC
Confidence 9999942 257999999999985
No 82
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.48 E-value=1.6e-13 Score=128.16 Aligned_cols=100 Identities=26% Similarity=0.515 Sum_probs=88.3
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
|.|.|+|++|++|++++..+. +||||+|.+.+.. .+|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T 37 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS 37 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence 789999999999998876654 9999999998754 588
Q ss_pred ccccC-CCCCeeeeeEEEeecCC----CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 97 ~~~~~-~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
++.++ +.+|.|||+|.|.+..+ ...|.|+|||.+.++ +++||.+.+++.++..+.....|+.|
T Consensus 38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 88875 89999999999999887 456999999999886 89999999999999877777889998
No 83
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.48 E-value=2.6e-14 Score=135.40 Aligned_cols=110 Identities=23% Similarity=0.364 Sum_probs=88.9
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---- 90 (766)
..+.|.|+|++|++|+.++.... .++||||+|.+..
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~l~~~~~k 52 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVTLKHQNAK 52 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEEEEcCCcc
Confidence 46889999999999998874211 1289999999843
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 166 (766)
..+.||++++++.||+|||+|.|.++.. ...|.|+|||.|.++ +++||.+.+++.. .|+..++|.+++...+++
T Consensus 53 ~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~ 130 (138)
T cd08407 53 LKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQ 130 (138)
T ss_pred cceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCc
Confidence 2356999999999999999999999874 345999999999998 9999999999874 466667888887665544
No 84
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.48 E-value=2.3e-13 Score=126.76 Aligned_cols=102 Identities=25% Similarity=0.448 Sum_probs=87.8
Q ss_pred ceEEEEEEEEeeCCCCCC-CcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004233 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~~ 92 (766)
.+.|.|+|++|++|+.++ ..+. +||||++.+. ...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~ 50 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDERR 50 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCCC
Confidence 468999999999999876 3333 9999999983 334
Q ss_pred eeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
..+|++++++.+|+|||+|.|.+... ...|.|.|||.+..+ +++||++.++|+++........|++|
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 57999999999999999999998764 346999999999887 89999999999999987778899998
No 85
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.47 E-value=8.8e-14 Score=130.16 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=85.9
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----C
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~----~ 90 (766)
..|+|.|+|++|++|++++... ..||||+|++- .
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~------------------------------------------~~dpYVKV~L~~~~k~ 49 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPL------------------------------------------TLSFFVKVGMFSTGGL 49 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCC------------------------------------------CCCcEEEEEEEECCCc
Confidence 4688999999999999754222 27999999982 2
Q ss_pred eeeeeeccccCCC-CCeeeeeEEEeecCCCce--EEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCC
Q 004233 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPLSN--LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (766)
Q Consensus 91 ~~~~~T~~~~~~~-~P~w~e~~~~~~~~~~~~--l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 166 (766)
..+.||+++++|. +|+|||+|.|.++.+... |.|+|||++..+ +++||.+.|+.+.. .++..++|.+++...+++
T Consensus 50 ~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ 128 (135)
T cd08692 50 LYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKV 128 (135)
T ss_pred ceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCe
Confidence 3567999999995 699999999999876433 888999998876 89999999998764 345567888886654443
No 86
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.47 E-value=4e-14 Score=134.07 Aligned_cols=106 Identities=22% Similarity=0.360 Sum_probs=85.9
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--e--
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-- 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--~-- 91 (766)
.+.|.|+|++|++|+.++..+. +||||+|.+.. .
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~~~~~~~ 51 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLLQDGRKI 51 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCccc
Confidence 4689999999999998775544 99999999932 1
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~ 165 (766)
.+.||++++++.||+|||+|.|.++.. ...|.|+|||+|.++ +++||++.|+... .|...++|..++...++
T Consensus 52 ~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~~ 127 (136)
T cd08406 52 SKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLRK 127 (136)
T ss_pred cccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHCCCC
Confidence 245899999999999999999998763 456999999999887 8999999997653 45566778887665443
No 87
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.46 E-value=3.5e-13 Score=123.34 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=70.2
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCCC-----ceEEEEEEEcCCCC-CceeEEEeccceeccCC---
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--- 150 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-----~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~--- 150 (766)
+||||++++.+++ .+|++++++.||.|||+|.|.+..+. ..|.|+|||.+.++ +++||++.++|+++..+
T Consensus 21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~ 99 (111)
T cd04011 21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99 (111)
T ss_pred CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence 9999999999865 59999999999999999999976542 46999999999887 89999999999999644
Q ss_pred ceeEEEEEccC
Q 004233 151 ELISRWYDIIA 161 (766)
Q Consensus 151 ~~~~~~~~l~~ 161 (766)
.....|++|..
T Consensus 100 ~~~~~w~~L~~ 110 (111)
T cd04011 100 AFLRKWLLLTD 110 (111)
T ss_pred cceEEEEEeeC
Confidence 45778999854
No 88
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.8e-13 Score=151.34 Aligned_cols=130 Identities=27% Similarity=0.401 Sum_probs=107.8
Q ss_pred eeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Ce
Q 004233 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA 91 (766)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~ 91 (766)
+-...|.|+|++|++|+.+|..+ ++||||++.+. ..
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g------------------------------------------~sdpyVK~~llPdk~ 201 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGG------------------------------------------TSDPYVKVYLLPDKK 201 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCC------------------------------------------CCCCeeEEEEcCCCC
Confidence 34567999999999999988322 29999999994 34
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 167 (766)
.+.+|++.++++||+|||+|.|.|... ...|.++|||.|+|+ +++||.+.++|..+........|.++........
T Consensus 202 ~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~ 281 (421)
T KOG1028|consen 202 GKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSE 281 (421)
T ss_pred CcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcc
Confidence 667999999999999999999998765 456999999999998 9999999999999887666788999965543333
Q ss_pred CCCceEEEEEEEEecCCC
Q 004233 168 KPGASIQLELKFTPCDKN 185 (766)
Q Consensus 168 ~~~g~i~l~l~~~~~~~~ 185 (766)
...|+|.++|+|.|.+..
T Consensus 282 ~~~gel~~sL~Y~p~~g~ 299 (421)
T KOG1028|consen 282 ELAGELLLSLCYLPTAGR 299 (421)
T ss_pred cccceEEEEEEeecCCCe
Confidence 344899999999998543
No 89
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.46 E-value=7e-14 Score=132.19 Aligned_cols=108 Identities=29% Similarity=0.434 Sum_probs=89.5
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---- 90 (766)
..|.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~ 48 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGK 48 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 34899999999999998876554 99999999942
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 166 (766)
..+.||++++++.+|+|||+|.|.+..+ ...|.|+|||.+..+ +++||.+.+++.. .++....|++++...+++
T Consensus 49 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 49 KSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred cCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 3457999999999999999999998764 346999999999886 8999999999975 355667899987665543
No 90
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.46 E-value=2.2e-13 Score=133.10 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=85.8
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----C
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~----~ 90 (766)
..|.|.|+|++|++|+.++..+. +||||+|.+. .
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~ 62 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK 62 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45899999999999998876554 9999999883 2
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC----CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
..+.||++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++........|+++
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 3567999999999999999999985432 346999999999987 99999999999998754455667766
No 91
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.46 E-value=2.8e-13 Score=154.96 Aligned_cols=153 Identities=19% Similarity=0.135 Sum_probs=114.9
Q ss_pred CCeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHH
Q 004233 211 GSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGEL 290 (766)
Q Consensus 211 gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~a 290 (766)
+..++++.+| |+. ..+.....++++|.+|+++|+|++++|.|+ ..+.++
T Consensus 302 ~~~~qi~~sg--P~~-------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip~----------------~~i~~a 350 (483)
T PRK01642 302 GHTVQVIASG--PGD-------------PEETIHQFLLTAIYSARERLWITTPYFVPD----------------EDLLAA 350 (483)
T ss_pred CceEEEEeCC--CCC-------------hhhHHHHHHHHHHHHhccEEEEEcCCcCCC----------------HHHHHH
Confidence 3468888876 322 114567789999999999999999888775 699999
Q ss_pred HHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceE
Q 004233 291 LKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKC 370 (766)
Q Consensus 291 L~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~ 370 (766)
|+.||+|||+||||+ +...... .+......+.+.|.++||+++.+... ..|.|+
T Consensus 351 L~~Aa~rGV~Vril~-p~~~d~~--------~~~~~~~~~~~~L~~~Gv~I~~y~~~-----------------~~HaK~ 404 (483)
T PRK01642 351 LKTAALRGVDVRIII-PSKNDSL--------LVFWASRAFFTELLEAGVKIYRYEGG-----------------LLHTKS 404 (483)
T ss_pred HHHHHHcCCEEEEEe-CCCCCcH--------HHHHHHHHHHHHHHHcCCEEEEeCCC-----------------ceEeEE
Confidence 999999999999998 5542211 11112234567788899999754221 179999
Q ss_pred EEEccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHH
Q 004233 371 VLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVL 449 (766)
Q Consensus 371 ~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gp-av~dl~ 449 (766)
+|||++ ++++||.|++. |.. ...+++.+.+.++ .+.++.
T Consensus 405 ~ivD~~--------~~~vGS~N~d~-rS~-------------------------------~~N~E~~~~i~d~~~~~~l~ 444 (483)
T PRK01642 405 VLVDDE--------LALVGTVNLDM-RSF-------------------------------WLNFEITLVIDDTGFAADLA 444 (483)
T ss_pred EEECCC--------EEEeeCCcCCH-hHH-------------------------------hhhhcceEEEECHHHHHHHH
Confidence 999998 99999999987 321 1224788889998 578999
Q ss_pred HHHHHHHhhhc
Q 004233 450 INFEQRWRKAT 460 (766)
Q Consensus 450 ~~F~~~W~~~~ 460 (766)
+.|.++|..+.
T Consensus 445 ~~f~~d~~~s~ 455 (483)
T PRK01642 445 AMQEDYFARSR 455 (483)
T ss_pred HHHHHHHHhCe
Confidence 99999997654
No 92
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.45 E-value=4e-13 Score=128.58 Aligned_cols=90 Identities=31% Similarity=0.652 Sum_probs=81.4
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
|.|.|+|++|++|+..+. +. +||||++.++++. .||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------------------sDPYV~v~~g~~~-~kT 37 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------------------SDPYVVLTLGNQK-VKT 37 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------------------cCcEEEEEECCEE-EEe
Confidence 889999999999997765 33 9999999998755 699
Q ss_pred ccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCC
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG 150 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~ 150 (766)
++++++.||+|||+|.|.+..+...|.|+|||++.++ +++||++.+++.++...
T Consensus 38 ~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 38 RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred eeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence 9999999999999999999988878999999999987 89999999999988744
No 93
>PRK13912 nuclease NucT; Provisional
Probab=99.45 E-value=1.3e-13 Score=136.84 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCc
Q 004233 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (766)
Q Consensus 560 ~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~ 639 (766)
..+...++++|++|+++|+|+. |+++ ...++.+|.++++ |||+|+||++...+...+
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~-----------------~~~i~~aL~~Aa~--RGV~VrIlld~~~~~~~~--- 88 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFT-----------------HKDIAKALKSAAK--RGVKISIIYDYESNHNND--- 88 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEc-----------------hHHHHHHHHHHHH--CCCEEEEEEeCccccCcc---
Confidence 3567889999999999999996 5542 1256677777765 569999999964321100
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHH-cccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEE
Q 004233 640 VQEILFWQSQTMQMMYSVVAQELRE-MQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (766)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~L~~-~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (766)
. .. ...|.+ .++++ ..+.. ... .......++|+|+|||
T Consensus 89 -~-------~~--------~~~l~~~~~~~~------~~~~~-~~~------------------~~~~~~~~~H~K~~vi 127 (177)
T PRK13912 89 -Q-------ST--------IGYLDKYPNIKV------CLLKG-LKA------------------KNGKYYGIMHQKVAII 127 (177)
T ss_pred -h-------hH--------HHHHHhCCCceE------EEecC-ccc------------------cCcccccccceeEEEE
Confidence 0 00 011111 12221 01100 000 0001135799999999
Q ss_pred eeeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 719 DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 719 Dd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
|++++++||+||+.+|+. .|.|+++++.||+++
T Consensus 128 D~~~~~iGS~N~t~~s~~--~N~E~~lii~d~~~~ 160 (177)
T PRK13912 128 DDKIVVLGSANWSKNAFE--NNYEVLLITDDTETI 160 (177)
T ss_pred cCCEEEEeCCCCChhHhc--cCCceEEEECCHHHH
Confidence 999999999999999998 469999999999875
No 94
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.45 E-value=1.3e-13 Score=131.02 Aligned_cols=106 Identities=27% Similarity=0.465 Sum_probs=87.9
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--e--
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-- 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--~-- 91 (766)
.+.|.|+|++|++|+.+|..+. +||||++.+.. .
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~ 51 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKRI 51 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCcee
Confidence 5789999999999998876554 99999999832 2
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecC---CCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~ 165 (766)
...||++++++.||.|||+|.|.+.. ....|.|+|||++.++ +++||.+.+++.. .+.....|+++....++
T Consensus 52 ~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~ 127 (136)
T cd08404 52 SKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRR 127 (136)
T ss_pred eeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCC
Confidence 34689999999999999999999875 3446999999999987 8999999999988 35566788888655443
No 95
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.44 E-value=3.5e-13 Score=129.84 Aligned_cols=98 Identities=26% Similarity=0.472 Sum_probs=84.7
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe----
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA---- 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~---- 91 (766)
.+.|.|+|++|++|+++|..+. +||||+|.+...
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~ 64 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPASRER 64 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEccccccc
Confidence 4789999999999999887665 999999998531
Q ss_pred ------------------------eeeeeccccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCCCceeEEEecccee
Q 004233 92 ------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHT 146 (766)
Q Consensus 92 ------------------------~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l~~ 146 (766)
.+.+|++++++.+|.|||+|.|.+... ...|.|+|||++ +++||.+.+++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~ 141 (153)
T cd08676 65 NSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKD 141 (153)
T ss_pred ccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHH
Confidence 246899999999999999999999764 456999999998 8999999999999
Q ss_pred ccCCceeEEEEEc
Q 004233 147 IATGELISRWYDI 159 (766)
Q Consensus 147 ~~~~~~~~~~~~l 159 (766)
+. +.....||+|
T Consensus 142 l~-~~~~d~W~~L 153 (153)
T cd08676 142 LP-SCGLDSWFKL 153 (153)
T ss_pred hC-CCCCCCeEeC
Confidence 98 4457899986
No 96
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.44 E-value=4.3e-13 Score=127.48 Aligned_cols=101 Identities=21% Similarity=0.410 Sum_probs=86.4
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---eeeee
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---ATVAR 95 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---~~~~~ 95 (766)
|.|+|++|++|+.+ ..+. +||||+|.+.. ..+.+
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------------------~dPyv~v~~~~~~~~~~~r 37 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------------------CDPFARVTLNYSSKTDTKR 37 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------------------CCcEEEEEEecCCcCCeec
Confidence 57999999999876 4443 99999999973 45679
Q ss_pred eccccCCCCCeeeeeEEEeecCC----------------CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEE
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~----------------~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~ 158 (766)
|++++++.+|.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++........|++
T Consensus 38 T~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~ 117 (137)
T cd08675 38 TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF 117 (137)
T ss_pred cceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence 99999999999999999998764 345999999999985 9999999999999987777889999
Q ss_pred ccCC
Q 004233 159 IIAP 162 (766)
Q Consensus 159 l~~~ 162 (766)
|...
T Consensus 118 L~~~ 121 (137)
T cd08675 118 LQPR 121 (137)
T ss_pred cCCc
Confidence 9433
No 97
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.44 E-value=4.8e-13 Score=124.93 Aligned_cols=90 Identities=27% Similarity=0.404 Sum_probs=76.9
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~ 95 (766)
.|.|+|+|++|++|+. +..+. +||||+|.+.+. +.|
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVkV~~~~~-~~k 62 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVKVFFGGQ-EKR 62 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEEEEECCc-ccc
Confidence 4899999999999973 44443 899999999876 679
Q ss_pred eccccCCCCCeeeeeEEEeecC--CCceEEEEEEEcCCCC-CceeEEEeccceeccC
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~--~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~ 149 (766)
|++++++.||+|||+|.|.... ....|+|+|||++.++ +++||++.++|.....
T Consensus 63 T~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 63 TEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 9999999999999999997543 3556999999999996 9999999999986653
No 98
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.44 E-value=8.8e-14 Score=132.08 Aligned_cols=108 Identities=28% Similarity=0.488 Sum_probs=88.6
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~-- 90 (766)
..|.|.|+|++|++|+.++..+. +||||+|.+. +
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 50 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEEEEEECCcc
Confidence 46889999999999998876554 9999999984 2
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 166 (766)
....+|++++++.||.|||+|.|.+.... ..|.|+|||.+.++ +++||++.|++... +.....|++++...+++
T Consensus 51 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 51 LKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRP 128 (136)
T ss_pred cceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCe
Confidence 23568999999999999999999987542 36999999999987 89999999999753 55667788887664443
No 99
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.43 E-value=7.8e-13 Score=124.70 Aligned_cols=109 Identities=27% Similarity=0.445 Sum_probs=91.9
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC
Q 004233 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (766)
Q Consensus 11 ~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~ 90 (766)
++.|..+.|.|+|++|++|+..+..+. +||||+|.+..
T Consensus 7 ~~~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~~ 44 (131)
T cd04026 7 KISVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLIP 44 (131)
T ss_pred EEEECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEEc
Confidence 446778999999999999997664433 99999999953
Q ss_pred ----eeeeeeccccCCCCCeeeeeEEEeecCC--CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCC
Q 004233 91 ----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 91 ----~~~~~T~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
....+|++++++.+|.|||+|.|.+... ...|.|+|||++..+ +++||++.+++.++... ....||+|...
T Consensus 45 ~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 45 DPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 3567999999999999999999998764 346999999999876 89999999999999744 67789999654
No 100
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.42 E-value=7.8e-14 Score=147.43 Aligned_cols=106 Identities=26% Similarity=0.446 Sum_probs=93.7
Q ss_pred eeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----
Q 004233 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP---- 89 (766)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~---- 89 (766)
+....|+|+|.+|++|-+||..+. +||||++.+-
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD~~ 214 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDPK 214 (683)
T ss_pred ecCceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccCCc
Confidence 345679999999999999999887 9999999992
Q ss_pred CeeeeeeccccCCCCCeeeeeEEEeecCCC--ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCC
Q 004233 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 90 ~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
++.++||++++.++||+|||+|+|.+.... ..|.|+|||+|+.+ ++|+|...+.+++|. ....+.||.|++.
T Consensus 215 ~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 215 NESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQ 289 (683)
T ss_pred chhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhh
Confidence 356789999999999999999999998875 44999999999998 999999999999997 5578899999754
No 101
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.42 E-value=2e-12 Score=121.08 Aligned_cols=116 Identities=29% Similarity=0.527 Sum_probs=93.9
Q ss_pred EEEEEEEEeeCCCCCC--CcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC-----C
Q 004233 18 DLDLKIIRARRLPNMD--MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q 90 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~-----~ 90 (766)
.|+|+|++|++|+.++ ..+. .||||++++. .
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 40 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI------------------------------------------VDPYVEVEIHGLPADD 40 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc------------------------------------------cCCEEEEEEEeCCCCC
Confidence 5899999999999776 2333 8999999993 2
Q ss_pred eeeeeeccccCCC-CCeeeeeEEEeecCCC-ceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCCCCCC
Q 004233 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (766)
Q Consensus 91 ~~~~~T~~~~~~~-~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 168 (766)
....||+++.++. +|.|||+|.|.+..+. ..|.|+|||++..++++||++.++++++..+ .+|++|..+.+.+ .
T Consensus 41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~-~ 116 (128)
T cd00275 41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEP-L 116 (128)
T ss_pred CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCC-C
Confidence 3457999988765 9999999999988765 3499999999888889999999999999754 3678887666653 4
Q ss_pred CCceEEEEEEE
Q 004233 169 PGASIQLELKF 179 (766)
Q Consensus 169 ~~g~i~l~l~~ 179 (766)
..|.|.+.+.+
T Consensus 117 ~~~~l~v~~~~ 127 (128)
T cd00275 117 ELSTLFVHIDI 127 (128)
T ss_pred cceeEEEEEEE
Confidence 56888888875
No 102
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.42 E-value=1.8e-12 Score=121.32 Aligned_cols=97 Identities=25% Similarity=0.423 Sum_probs=77.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCC---ce--e
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG---EL--I 153 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~---~~--~ 153 (766)
+||||+|.+.+....+|++++++.+|+|||+|.|.+.. ...|.|+|||++..+ +++||.+.++|.++... .. .
T Consensus 22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 100 (125)
T cd04021 22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV 100 (125)
T ss_pred CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence 99999999987656899999999999999999999864 457999999999986 89999999999998742 22 3
Q ss_pred EEEEEccCCCCCCCCCCceEEEEE
Q 004233 154 SRWYDIIAPSGSPPKPGASIQLEL 177 (766)
Q Consensus 154 ~~~~~l~~~~~~~~~~~g~i~l~l 177 (766)
..|+++..+.....+..|+|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 101 KLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEccCCCcceeeeeEEEEe
Confidence 358888544311224578888775
No 103
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.41 E-value=2.5e-13 Score=128.95 Aligned_cols=108 Identities=29% Similarity=0.469 Sum_probs=87.6
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~-- 90 (766)
..|.|.|+|++|++|+.++..+. +||||+|.+. +
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~ 50 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCc
Confidence 45899999999999998776554 9999999982 2
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 166 (766)
....||++++++.+|+|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++... +.....|++++...+++
T Consensus 51 ~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 51 VEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred cccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 2356899999999999999999997642 346999999999987 89999999999875 44456787776655543
No 104
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.41 E-value=2.2e-13 Score=129.02 Aligned_cols=108 Identities=33% Similarity=0.507 Sum_probs=87.8
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~-- 90 (766)
..|.|+|+|++|++|+.++..+. +||||+|.+. +
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~~~~~ 49 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMCEGRR 49 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCcc
Confidence 35889999999999998886665 9999999983 2
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 166 (766)
....+|++++++.+|.|||+|.|.+.... ..|.|+|||++.++ +++||.+.+++. ..+.....|++++...+++
T Consensus 50 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~ 127 (134)
T cd08403 50 LKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKP 127 (134)
T ss_pred cceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCe
Confidence 23569999999999999999999986532 35999999999988 999999999987 3344556788887665543
No 105
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.41 E-value=2.3e-13 Score=128.58 Aligned_cols=107 Identities=32% Similarity=0.539 Sum_probs=89.9
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----~ 91 (766)
.+.|.|+|++|++|+.++..+. +||||++.+.+ .
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 50 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKL 50 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEe
Confidence 3789999999999998775443 99999999853 2
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 166 (766)
...+|++++++.+|.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++++ .+.....|++|+...+++
T Consensus 51 ~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 51 KKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP 127 (134)
T ss_pred eeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence 356999999999999999999998775 356999999999876 8999999999999 566778899997665543
No 106
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.40 E-value=3.7e-12 Score=120.67 Aligned_cols=115 Identities=23% Similarity=0.393 Sum_probs=90.8
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--e----
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A---- 91 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--~---- 91 (766)
.+.|++++|++|+ ++..++ +||||++.+.. .
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~------------------------------------------~DPyvki~~~~~~~~~~~ 38 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFN------------------------------------------PDPYVKISIQPGKRHIFP 38 (137)
T ss_pred EEEEEEEEeCCCC-CccCCC------------------------------------------CCceEEEEEECCCccccc
Confidence 4689999999998 676665 99999999942 1
Q ss_pred ------eeeeeccccCCCCCee-eeeEEEeecCCCceEEEEEEEcCCCC----CceeEEEeccceeccCC---ceeEEEE
Q 004233 92 ------TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIATG---ELISRWY 157 (766)
Q Consensus 92 ------~~~~T~~~~~~~~P~w-~e~~~~~~~~~~~~l~~~v~d~~~~~----~~~iG~~~~~l~~~~~~---~~~~~~~ 157 (766)
...||++++++.||+| ||+|.|.+.. ...|.|+|||++..+ +++||.+.+++.++..+ .....|+
T Consensus 39 ~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~ 117 (137)
T cd08691 39 ALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSY 117 (137)
T ss_pred ccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEE
Confidence 2579999999999999 9999999864 457999999976532 69999999999999744 3466799
Q ss_pred EccCCCCCCCCCCceEEEEE
Q 004233 158 DIIAPSGSPPKPGASIQLEL 177 (766)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l 177 (766)
++ .+.+......|+|.+.+
T Consensus 118 ~l-~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 118 TL-GRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EC-CcCCCCCcEEEEEEEEe
Confidence 98 44344445678888765
No 107
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.40 E-value=1.1e-12 Score=124.07 Aligned_cols=91 Identities=30% Similarity=0.456 Sum_probs=79.5
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC------
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------ 90 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~------ 90 (766)
+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~~ 53 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFPD 53 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCcc
Confidence 789999999999998876554 99999999852
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC-----CceEEEEEEEcCCCC-CceeEEEeccceeccC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~-----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~ 149 (766)
....||++++++.||+|||+|.|++... ...|.|+|||++.++ +++||++.++|+++..
T Consensus 54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 3467999999999999999999998763 346999999999988 9999999999998873
No 108
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.39 E-value=2.4e-12 Score=120.12 Aligned_cols=124 Identities=20% Similarity=0.380 Sum_probs=87.5
Q ss_pred HHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccc-c
Q 004233 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA-T 325 (766)
Q Consensus 247 l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~-~ 325 (766)
|.++|++|+++|+|++|.|.+ ..+.++|..++++||+|+||+ |...... +... .
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~-----------------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~-------~~~~~~ 55 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITD-----------------PDIIKALLDAAKRGVKVRIIV-DSNQDDS-------EAINLA 55 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-S-----------------CHHHHHHHHHHHTT-EEEEEE-ECGGGHH-------CCCSHH
T ss_pred CHHHHhccCCEEEEEEEecCc-----------------HHHHHHHHHHHHCCCeEEEEE-CCCcccc-------chhhhH
Confidence 578999999999999998843 588999999999999999998 6532100 0000 0
Q ss_pred CcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCCCCCCC
Q 004233 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405 (766)
Q Consensus 326 ~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l 405 (766)
......+.+...|++++ + +.|.|++|||++ ++++||.|++...|
T Consensus 56 ~~~~~~~~~~~~~i~v~--~-------------------~~H~K~~i~d~~--------~~iiGS~N~t~~~~------- 99 (126)
T PF13091_consen 56 SLKELRELLKNAGIEVR--N-------------------RLHAKFYIIDDK--------VAIIGSANLTSSSF------- 99 (126)
T ss_dssp HHHHHHHHHHHTTHCEE--S--------------------B--EEEEETTT--------EEEEES--CSCCCS-------
T ss_pred HHHHHHhhhccceEEEe--c-------------------CCCcceEEecCc--------cEEEcCCCCCcchh-------
Confidence 01233444577888876 1 279999999998 99999999998544
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHH
Q 004233 406 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW 456 (766)
Q Consensus 406 ~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpa-v~dl~~~F~~~W 456 (766)
...++..+.+.+|. +.++.+.|.++|
T Consensus 100 -------------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 -------------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -------------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -------------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 23569999999996 899999999999
No 109
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.39 E-value=3.7e-13 Score=127.64 Aligned_cols=109 Identities=23% Similarity=0.423 Sum_probs=85.5
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEE-CC---
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV-PQ--- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~-~~--- 90 (766)
..|.|.|+|++|++|+.++..+. +||||++.+ .+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~~ 49 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLKL 49 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 45899999999999998886665 999999997 22
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 166 (766)
....+|++++++.||+|||+|.|.+... ...|.|+|||++..+ +++||.+.|...... +.....|+.++...+++
T Consensus 50 ~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 50 IKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTA 128 (135)
T ss_pred cceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCE
Confidence 2346999999999999999999998653 235999999999877 999999886543322 22356788887665544
No 110
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.39 E-value=1.2e-12 Score=129.71 Aligned_cols=130 Identities=26% Similarity=0.385 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCc
Q 004233 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (766)
Q Consensus 560 ~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~ 639 (766)
..+...++++|.+|+++|+|+++||.+... .. ...+...|.+++++ ||+|+||++.......
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~~---~~---------~~~l~~~L~~a~~r--Gv~V~il~~~~~~~~~---- 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLIT---EY---------GPVILDALLAAARR--GVKVRILVDEWSNTDL---- 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEeccccc---cc---------chHHHHHHHHHHHC--CCEEEEEEcccccCCc----
Confidence 578899999999999999999999985210 00 23566777777665 5999999996432110
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHc---ccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEE
Q 004233 640 VQEILFWQSQTMQMMYSVVAQELREM---QVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGM 716 (766)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~L~~~---Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~ 716 (766)
..... ....|... |+++ +.+.... .....+|+|+|
T Consensus 82 ------~~~~~-------~~~~l~~~~~~~i~~--------~~~~~~~---------------------~~~~~~H~K~~ 119 (176)
T cd00138 82 ------KISSA-------YLDSLRALLDIGVRV--------FLIRTDK---------------------TYGGVLHTKLV 119 (176)
T ss_pred ------hHHHH-------HHHHHHHhhcCceEE--------EEEcCCc---------------------ccccceeeeEE
Confidence 00111 13445443 4442 2221100 01258999999
Q ss_pred EEeeeEeEEccCCcCcccCCCCCcccceeeeeCCc
Q 004233 717 IVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 751 (766)
Q Consensus 717 IVDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~ 751 (766)
|||++.+++||+||+.+++. .|.|+++++++|+
T Consensus 120 iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 120 IVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred EEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 99999999999999999998 4699999999997
No 111
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.38 E-value=3.7e-13 Score=127.94 Aligned_cols=106 Identities=21% Similarity=0.430 Sum_probs=86.5
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--e--
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-- 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--~-- 91 (766)
.+.|.|+|++|++|+.++ .+. +||||+|.+.. .
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~~ 50 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKVV 50 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEEe
Confidence 478999999999999877 443 99999999842 1
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~ 164 (766)
...||++++++.||+|||+|.|.+... ...|.|+|||.+..+ +++||++.++......+...++|.+++...+
T Consensus 51 ~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~ 127 (137)
T cd08409 51 KTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPK 127 (137)
T ss_pred eeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCC
Confidence 345999999999999999999998753 245999999999876 8999999998776666666777888765433
No 112
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.37 E-value=1.8e-12 Score=121.12 Aligned_cols=117 Identities=24% Similarity=0.349 Sum_probs=89.2
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCee-eeeec
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VARTR 97 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~-~~~T~ 97 (766)
|+|+|++|++|+.++..+. +||||++.+.+.. ..||+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT~ 39 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRDN 39 (124)
T ss_pred EEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeeccceee
Confidence 7899999999998887665 9999999997753 35888
Q ss_pred cccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004233 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (766)
Q Consensus 98 ~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l 175 (766)
+++++.+|+|||+|.|.+..+ ...|.|+|||++.++ +++||++.+++.+... ..+|.....+...+ ..|.++.
T Consensus 40 ~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~---~~~~~~~~~~~~~~--~~~~~~~ 114 (124)
T cd04037 40 YIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF---SKHRATCGLPPTYE--ESGPNQW 114 (124)
T ss_pred EEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc---chHHHhccCCCccc--ccCceec
Confidence 999999999999999998655 456999999999986 9999999999986652 22333332222222 3566776
Q ss_pred EEEEEec
Q 004233 176 ELKFTPC 182 (766)
Q Consensus 176 ~l~~~~~ 182 (766)
+..+.|.
T Consensus 115 ~~~~~~~ 121 (124)
T cd04037 115 RDSLKPS 121 (124)
T ss_pred CcccCcc
Confidence 6665553
No 113
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.37 E-value=5.4e-12 Score=115.01 Aligned_cols=66 Identities=33% Similarity=0.531 Sum_probs=56.0
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEc-------CCCC-CceeEEEecccee
Q 004233 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAHT 146 (766)
Q Consensus 80 ~dpyv~~~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~-------~~~~-~~~iG~~~~~l~~ 146 (766)
+||||++++.. ..++||+++++|+||+|||+|.|++.. ...|.|.|||+ |..+ ++++|.+.+.|+.
T Consensus 15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 89999999853 356899999999999999999999974 66899999998 3445 8999888887654
No 114
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.37 E-value=1.2e-12 Score=164.65 Aligned_cols=122 Identities=21% Similarity=0.439 Sum_probs=104.5
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe
Q 004233 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (766)
Q Consensus 12 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~ 91 (766)
+..+.|.|.|+|++|++|. +.++. +||||++.++++
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~------------------------------------------sdPyv~l~~g~~ 2010 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGN------------------------------------------TNAFCKLTLGNG 2010 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCC------------------------------------------CCCeEEEEECCC
Confidence 4678999999999999997 32333 999999999976
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCC--ceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCCCCCCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 169 (766)
.+.||++++++.||+|||+|+|.+..|. ..|.|+|||+|.|+++.+|.+.|++.++..+..+..||+|+.. ++ .
T Consensus 2011 ~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~-~~---k 2086 (2102)
T PLN03200 2011 PPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPE-SN---K 2086 (2102)
T ss_pred CcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCcc-cc---c
Confidence 5569999999999999999998888765 5699999999999988999999999999988899999999632 22 2
Q ss_pred Cce---EEEEEEEEe
Q 004233 170 GAS---IQLELKFTP 181 (766)
Q Consensus 170 ~g~---i~l~l~~~~ 181 (766)
.|+ |++++.|.+
T Consensus 2087 ~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2087 DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCcceEEEEEEecC
Confidence 455 999999876
No 115
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.37 E-value=2.4e-12 Score=122.46 Aligned_cols=106 Identities=19% Similarity=0.371 Sum_probs=84.6
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---e-
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A- 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---~- 91 (766)
.++|.|+|++|++|+.++..+. +||||++.+.. .
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~~~ 51 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDGQE 51 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCCcc
Confidence 4899999999999998876544 99999999832 1
Q ss_pred -eeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCC
Q 004233 92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (766)
Q Consensus 92 -~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~ 164 (766)
...||++++++.||+|||+|.|++... ...|.|+|||.+.++ +++||++.+++..... +..+.|+.++...+
T Consensus 52 ~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~ 128 (138)
T cd08408 52 ISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKG 128 (138)
T ss_pred eeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCC
Confidence 246999999999999999999999863 346999999999877 8999999998875431 23456777755444
No 116
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.37 E-value=3.1e-12 Score=142.71 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=103.9
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~ 320 (766)
.++...++++|.+|+++|+|++.+|.|+ ..|+++|+.|++|||+|+||+ ++.+...
T Consensus 205 ~~i~~~~~~~i~~A~~~I~I~tpYf~p~----------------~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~------- 260 (411)
T PRK11263 205 DDIERHYLKALRQARREVIIANAYFFPG----------------YRLLRALRNAARRGVRVRLIL-QGEPDMP------- 260 (411)
T ss_pred HHHHHHHHHHHHHhceEEEEEecCcCCC----------------HHHHHHHHHHHHCCCEEEEEe-CCCCCcH-------
Confidence 4567789999999999999999888774 689999999999999999998 6543221
Q ss_pred CccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCC
Q 004233 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (766)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (766)
++......+...|.++||+++.+... ..|.|++|||++ +++|||.|++. |...
T Consensus 261 -~~~~a~~~~~~~Ll~~Gv~I~~y~~~-----------------~lHaK~~viD~~--------~~~vGS~Nld~-rS~~ 313 (411)
T PRK11263 261 -IVRVGARLLYNYLLKGGVQIYEYCRR-----------------PLHGKVALMDDH--------WATVGSSNLDP-LSLS 313 (411)
T ss_pred -HHHHHHHHHHHHHHHCCCEEEEecCC-----------------CceeEEEEECCC--------EEEEeCCcCCH-HHhh
Confidence 11111234567788899998754211 279999999998 99999999988 4421
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHHh
Q 004233 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWR 457 (766)
Q Consensus 401 ~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpa-v~dl~~~F~~~W~ 457 (766)
...++.+.|.++. +++|...|.+++.
T Consensus 314 -------------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 314 -------------------------------LNLEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred -------------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 1236778888885 5888899999986
No 117
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.36 E-value=3.7e-12 Score=118.24 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=69.2
Q ss_pred CCcEEEEEECCe------eeeeeccccCCCCCeeeeeEEEeecC-CCceEEEEEEEcCC----CC-CceeEEEeccceec
Q 004233 80 SDPYVTVVVPQA------TVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI 147 (766)
Q Consensus 80 ~dpyv~~~~~~~------~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~----~~-~~~iG~~~~~l~~~ 147 (766)
+||||+|.+... .+.||++++++.||+|||+|.|.+.. ....|.|+|||++. .+ +++||++.+++.++
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l 100 (120)
T cd04048 21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100 (120)
T ss_pred CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence 999999999553 35799999999999999999998654 34469999999996 55 89999999999999
Q ss_pred cCCceeEEEEEc
Q 004233 148 ATGELISRWYDI 159 (766)
Q Consensus 148 ~~~~~~~~~~~l 159 (766)
..+.....|++|
T Consensus 101 ~~~~~~~~~~~l 112 (120)
T cd04048 101 VSSPGQKLTLPL 112 (120)
T ss_pred hcCCCcEEEEEc
Confidence 877777788888
No 118
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.35 E-value=6.2e-12 Score=117.17 Aligned_cols=101 Identities=29% Similarity=0.405 Sum_probs=83.0
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----~ 91 (766)
.+.|.|+|++|++|++.+..+. +||||++.+.. .
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~ 51 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASKA 51 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCCC
Confidence 4689999999999998776544 99999999831 3
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCC----CceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEE
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD 158 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~ 158 (766)
.+.||++++++.+|.|||+|.|..... ...|.|+|||.+.+++++||.+.++++++..++....|+.
T Consensus 52 ~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 52 TKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 467999999999999999999963322 3469999999988788999999999999987766655553
No 119
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.33 E-value=2.9e-12 Score=119.49 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=74.4
Q ss_pred HHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchhhhhH
Q 004233 566 YIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILF 645 (766)
Q Consensus 566 ~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~ 645 (766)
+.++|.+|+++|+|++|||... .+...+..+.+ +|++|+||+..... +... ..
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~~--~gv~v~ii~~~~~~-~~~~------~~ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDAAK--RGVKVRIIVDSNQD-DSEA------IN 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHHH--TT-EEEEEEECGGG-HHCC------CS
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHHH--CCCeEEEEECCCcc-ccch------hh
Confidence 4689999999999999999521 23455555544 56999999995221 0000 00
Q ss_pred hhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEEeeeEeEE
Q 004233 646 WQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIM 725 (766)
Q Consensus 646 ~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~I 725 (766)
. . ....+.+.+...|+++ + .++|+|++|+|++++++
T Consensus 54 ~--~----~~~~~~~~~~~~~i~v--------~------------------------------~~~H~K~~i~d~~~~ii 89 (126)
T PF13091_consen 54 L--A----SLKELRELLKNAGIEV--------R------------------------------NRLHAKFYIIDDKVAII 89 (126)
T ss_dssp H--H----HHHHHHHHHHHTTHCE--------E------------------------------S-B--EEEEETTTEEEE
T ss_pred h--H----HHHHHHhhhccceEEE--------e------------------------------cCCCcceEEecCccEEE
Confidence 0 1 1112344457777764 1 27899999999999999
Q ss_pred ccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 726 GSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 726 GSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
||+||+.+|+. .|.|+++.+.+|+++
T Consensus 90 GS~N~t~~~~~--~n~E~~~~~~~~~~~ 115 (126)
T PF13091_consen 90 GSANLTSSSFR--RNYELGVIIDDPELV 115 (126)
T ss_dssp ES--CSCCCSC--TSEEEEEEEECHHHH
T ss_pred cCCCCCcchhc--CCcceEEEEECHHHH
Confidence 99999999997 569999999999753
No 120
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.24 E-value=1.4e-11 Score=137.72 Aligned_cols=127 Identities=26% Similarity=0.378 Sum_probs=111.4
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
..|.|+|.+|++||..+..+. +||||+|.++++.+.||
T Consensus 5 ~sl~vki~E~knL~~~~~~g~------------------------------------------~D~yC~v~lD~E~v~RT 42 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGM------------------------------------------RDCYCTVNLDQEEVCRT 42 (800)
T ss_pred cceeEEEeecccCCCCCCCCC------------------------------------------cCcceEEeecchhhhhh
Confidence 568999999999998765543 99999999999999999
Q ss_pred ccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l 175 (766)
.++.+|++|.|.|.|.|.++....-|.|.|||.| ++ |++||.+.|.-.+|......+.|+.| .+-....+..|+|+|
T Consensus 43 ~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L-~~VD~dsEVQG~v~l 120 (800)
T KOG2059|consen 43 ATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSL-QPVDPDSEVQGKVHL 120 (800)
T ss_pred hhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceec-cccCCChhhceeEEE
Confidence 9999999999999999999999989999999999 66 99999999999998866678899999 443444478999999
Q ss_pred EEEEEecCCCCc
Q 004233 176 ELKFTPCDKNPL 187 (766)
Q Consensus 176 ~l~~~~~~~~p~ 187 (766)
++.+.+......
T Consensus 121 ~l~~~e~~~~~~ 132 (800)
T KOG2059|consen 121 ELALTEAIQSSG 132 (800)
T ss_pred EEEeccccCCCc
Confidence 999998766543
No 121
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.18 E-value=8.7e-11 Score=107.15 Aligned_cols=69 Identities=33% Similarity=0.556 Sum_probs=58.9
Q ss_pred CCcEEEEEECCe-----eeeeeccccCCCCCeeeeeEEEeecC-----CCceEEEEEEEcCCCC-CceeEEEeccceecc
Q 004233 80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (766)
Q Consensus 80 ~dpyv~~~~~~~-----~~~~T~~~~~~~~P~w~e~~~~~~~~-----~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (766)
+||||+|.+.+. .+.+|++++++.+|+|| +|.|++.. ....|.|+|||++.++ +++||.+.+++.++.
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 999999998432 46799999999999999 78887542 1456999999999987 899999999999987
Q ss_pred C
Q 004233 149 T 149 (766)
Q Consensus 149 ~ 149 (766)
.
T Consensus 100 ~ 100 (110)
T cd04047 100 K 100 (110)
T ss_pred c
Confidence 3
No 122
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.13 E-value=1.5e-10 Score=99.50 Aligned_cols=81 Identities=44% Similarity=0.762 Sum_probs=69.5
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCe--eeeee
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART 96 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~--~~~~T 96 (766)
|+|+|++|++|+..+..+. .||||++.+... ...+|
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T 38 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT 38 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence 7899999999997665444 999999999663 34799
Q ss_pred ccccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCC-CceeEEEe
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAA 141 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~ 141 (766)
++++++.+|.|+|+|.|++..+ ...|.|+|||.+.++ +++||++.
T Consensus 39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 9999999999999999996654 445999999999998 99999873
No 123
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.2e-10 Score=125.97 Aligned_cols=119 Identities=25% Similarity=0.491 Sum_probs=96.3
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~ 94 (766)
|...+.++|++|.+|...|..++ +||||++.++..+ .
T Consensus 293 wsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktk-r 329 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTK-R 329 (1283)
T ss_pred cceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccc-h
Confidence 45678999999999998776655 9999999998855 5
Q ss_pred eeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCC------------CCceeEEEeccceeccCCceeEEEEEccCC
Q 004233 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~------------~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
||+++...+||+|||.|.|...+....+++.|||.|.. +|+|+|+..|.+.++. .+++.||.|-..
T Consensus 330 rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls--gemdvwynlekr 407 (1283)
T KOG1011|consen 330 RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKR 407 (1283)
T ss_pred hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhc
Confidence 99999999999999999999999998999999998754 4899999999888776 357789999433
Q ss_pred CCCCCCCCceEEEEEEE
Q 004233 163 SGSPPKPGASIQLELKF 179 (766)
Q Consensus 163 ~~~~~~~~g~i~l~l~~ 179 (766)
.. +....|.|+|.+..
T Consensus 408 td-ksavsgairlhisv 423 (1283)
T KOG1011|consen 408 TD-KSAVSGAIRLHISV 423 (1283)
T ss_pred cc-hhhccceEEEEEEE
Confidence 33 33456666555543
No 124
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.01 E-value=1.3e-09 Score=128.53 Aligned_cols=127 Identities=27% Similarity=0.455 Sum_probs=103.3
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~T 96 (766)
|.|.|+|.+|++|...+.+-. .+.|||+++.+.+...+||
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~gkT 475 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVIGKT 475 (1227)
T ss_pred EEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccCCcc
Confidence 999999999999987663221 2399999999988777899
Q ss_pred ccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeE-EEEEccCCCCCCCCCCceEE
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS-RWYDIIAPSGSPPKPGASIQ 174 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~g~i~ 174 (766)
++.+++.||+|||+|.+.+..-...|.++|||.+.++ |+.+|++.++|..+....... .-+.+... .++.|+|.
T Consensus 476 ~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~----~k~vGrL~ 551 (1227)
T COG5038 476 RVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN----TKNVGRLT 551 (1227)
T ss_pred ceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeecc----CccceEEE
Confidence 9999999999999999999988889999999976665 999999999999887433322 23444221 25789999
Q ss_pred EEEEEEecCCCCc
Q 004233 175 LELKFTPCDKNPL 187 (766)
Q Consensus 175 l~l~~~~~~~~p~ 187 (766)
..++|.|...+..
T Consensus 552 yDl~ffp~~e~k~ 564 (1227)
T COG5038 552 YDLRFFPVIEDKK 564 (1227)
T ss_pred EeeeeecccCCcc
Confidence 9999999876654
No 125
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.00 E-value=1.9e-09 Score=94.52 Aligned_cols=80 Identities=34% Similarity=0.646 Sum_probs=69.7
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecC-CCceEEEEEEEcCCCC-CceeEEEeccceecc-CCceeEEE
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW 156 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~-~~~~~~~~ 156 (766)
.+|||++.+......+|+++.++.+|.|+|.|.|++.. ....|.|+||+.+..+ +.+||++.+++..+. .......|
T Consensus 20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~ 99 (102)
T cd00030 20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99 (102)
T ss_pred CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence 99999999987555799999999999999999999988 5667999999998887 899999999999987 55566677
Q ss_pred EEc
Q 004233 157 YDI 159 (766)
Q Consensus 157 ~~l 159 (766)
++|
T Consensus 100 ~~l 102 (102)
T cd00030 100 LPL 102 (102)
T ss_pred ecC
Confidence 754
No 126
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.00 E-value=2.6e-09 Score=114.56 Aligned_cols=157 Identities=17% Similarity=0.291 Sum_probs=103.5
Q ss_pred chHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCC
Q 004233 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (766)
Q Consensus 242 ~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~ 321 (766)
.-+++|+..|..|+++|+|....+.|......+ .+. ..|.++|++||-|||+||+|+ -...- . ..+
T Consensus 276 ~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~~f------w~iDdaiR~aa~RgV~vR~lv-s~~~~-~-----~~~ 341 (456)
T KOG3603|consen 276 WDLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-HRF------WEIDDAIRRAAVRGVKVRLLV-SCWKH-S-----EPS 341 (456)
T ss_pred hhHHHHHHHHHHHhhheeeeehhccchheeecC-cch------hhhhHHHHHHhhcceEEEEEE-eccCC-C-----Cch
Confidence 347899999999999999998888887544332 221 389999999999999999998 22210 0 000
Q ss_pred cccc-Cc-HHHHhhhcCCCceEEec--ccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcc
Q 004233 322 VMAT-HD-EETKKFFKHSSVNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (766)
Q Consensus 322 ~~~~-~~-~~~~~~l~~~gi~v~~~--~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r 397 (766)
+... ++ ......+.+..|+|+++ |..... ..+...++|.|+||-+. .||||..|++.+|
T Consensus 342 m~~~L~SLq~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aayIGTSNws~dY 404 (456)
T KOG3603|consen 342 MFRFLRSLQDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAYIGTSNWSGDY 404 (456)
T ss_pred HHHHHHHHHHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------ceeeeccCCCccc
Confidence 0000 00 01112233566777754 332111 11224579999999998 8999999999988
Q ss_pred cCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEE-----eChHHHHHHHHHHHHHhhhcc
Q 004233 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL-----DGPAAYDVLINFEQRWRKATK 461 (766)
Q Consensus 398 ~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v-----~Gpav~dl~~~F~~~W~~~~~ 461 (766)
|.... .+++.| .|+++.+|..+|.++|+....
T Consensus 405 f~~Ta--------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 405 FTSTA--------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred eeccC--------------------------------ceEEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence 84310 233333 467899999999999998654
No 127
>PLN02223 phosphoinositide phospholipase C
Probab=98.99 E-value=4.6e-09 Score=117.96 Aligned_cols=97 Identities=23% Similarity=0.426 Sum_probs=79.3
Q ss_pred CCCcEEEEEECC----eeeeeeccccCCCCCeeeeeEEEeecCCCce-EEEEEEEcCCCC-CceeEEEeccceeccCCce
Q 004233 79 TSDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (766)
Q Consensus 79 ~~dpyv~~~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (766)
..||||+|++.+ ....+|++..|+.||+|||+|.|++..|+.- |.|+|+|+|..+ ++++|++.+|++.+..|.
T Consensus 434 ~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy- 512 (537)
T PLN02223 434 KPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI- 512 (537)
T ss_pred CCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc-
Confidence 389999999943 3445888888899999999999999888765 899999999876 899999999999999876
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEE
Q 004233 153 ISRWYDIIAPSGSPPKPGASIQLELKF 179 (766)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~g~i~l~l~~ 179 (766)
++++|....|.+.. ..+|.+.+.|
T Consensus 513 --R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 513 --RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred --eeEeccCCCcCCCC-CceEEEEEEe
Confidence 45788777776643 4567766655
No 128
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.97 E-value=2.5e-09 Score=94.15 Aligned_cols=72 Identities=43% Similarity=0.774 Sum_probs=64.2
Q ss_pred CCcEEEEEECCe--eeeeeccccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCC-CceeEEEeccceeccCCc
Q 004233 80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (766)
Q Consensus 80 ~dpyv~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~ 151 (766)
.+|||++.+... ...+|+++.++.+|.|||+|.|.+..+ ...|.|+|||.+..+ +.++|.+.+++.++..+.
T Consensus 21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCc
Confidence 899999999765 567999999999999999999999887 677999999998876 899999999998887543
No 129
>PRK05443 polyphosphate kinase; Provisional
Probab=98.95 E-value=2.9e-09 Score=125.00 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=90.3
Q ss_pred HHHHHHHHhccc-----eEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCC
Q 004233 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (766)
Q Consensus 564 ~a~~~lI~~Ak~-----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~ 638 (766)
..++++|++|.+ .|.|+...+..+ ..++.+|.+|+++ ||+|+||++..+ .
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~iv~aL~~Aa~~--Gk~V~vlve~ka--r---- 405 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKD-----------------SPIVDALIEAAEN--GKQVTVLVELKA--R---- 405 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCC-----------------HHHHHHHHHHHHc--CCEEEEEEccCc--c----
Confidence 578889999999 899986555422 2566777777664 599999999632 1
Q ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEE
Q 004233 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (766)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (766)
+..++... ..+.|.++|++| +|.+ ...++|+|+++|
T Consensus 406 ----fde~~n~~-------~~~~L~~aGv~V-------~y~~--------------------------~~~k~HaK~~li 441 (691)
T PRK05443 406 ----FDEEANIR-------WARRLEEAGVHV-------VYGV--------------------------VGLKTHAKLALV 441 (691)
T ss_pred ----ccHHHHHH-------HHHHHHHcCCEE-------EEcc--------------------------CCccceeEEEEE
Confidence 11122222 268899999986 4543 135899999999
Q ss_pred eee-------EeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 719 DDE-------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 719 Dd~-------~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
|++ ++.|||+|+|.||+.. ++|+++++.+++++
T Consensus 442 d~~e~~~~~~~~~iGTgN~n~~s~~~--y~D~~l~t~d~~i~ 481 (691)
T PRK05443 442 VRREGGGLRRYVHLGTGNYNPKTARL--YTDLSLLTADPEIG 481 (691)
T ss_pred EeecCCceeEEEEEcCCCCCcchhhh--ccceeEEEeChHHH
Confidence 999 9999999999999984 59999999999874
No 130
>PLN02952 phosphoinositide phospholipase C
Probab=98.94 E-value=7.9e-09 Score=118.47 Aligned_cols=96 Identities=23% Similarity=0.453 Sum_probs=78.3
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeeeEEEeecCCCce-EEEEEEEcCCCC-CceeEEEeccceeccCCcee
Q 004233 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (766)
Q Consensus 80 ~dpyv~~~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~ 153 (766)
.||||+|.+-+ ....+|+++.++.||+|||+|.|++..+... |.|.|+|+|..+ ++++|++.+|++.|..|.
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 69999999943 3456999999999999999999999887654 899999999887 899999999999999886
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004233 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (766)
Q Consensus 154 ~~~~~l~~~~~~~~~~~g~i~l~l~~ 179 (766)
+|++|....|.+.. ...|.+.+.|
T Consensus 575 -R~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 575 -RSVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred -eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence 58899777775532 3455555544
No 131
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.89 E-value=5.6e-09 Score=97.88 Aligned_cols=71 Identities=24% Similarity=0.304 Sum_probs=61.9
Q ss_pred CCcEEEEEECC--eeeeeeccccCCCC--CeeeeeEEEeecCC------------------------CceEEEEEEEcCC
Q 004233 80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV 131 (766)
Q Consensus 80 ~dpyv~~~~~~--~~~~~T~~~~~~~~--P~w~e~~~~~~~~~------------------------~~~l~~~v~d~~~ 131 (766)
+||||++.+.+ ..+++|.|..++.| |.||+.|.|++..+ ...|.++|||.|.
T Consensus 25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence 99999999965 46789999999999 99999999997761 1349999999999
Q ss_pred CC-CceeEEEeccceeccCC
Q 004233 132 FG-AQIIGTAAIPAHTIATG 150 (766)
Q Consensus 132 ~~-~~~iG~~~~~l~~~~~~ 150 (766)
++ +++||.++++|..+..+
T Consensus 105 ~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 105 FSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cCCCCcceEEEEEhhhcccc
Confidence 98 99999999999987654
No 132
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.88 E-value=6.9e-09 Score=117.97 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=100.5
Q ss_pred HHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccc
Q 004233 245 EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA 324 (766)
Q Consensus 245 ~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~ 324 (766)
..++.+|.+|+++|+|++.+|.|+ ..+.++|..|++|||+|+||+ +..+.... ....
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~~~----------------~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~------~~~~ 329 (438)
T COG1502 273 RLLLKAINSARESILIATPYFVPD----------------RELLAALKAAARRGVDVRIII-PSLGANDS------AIVH 329 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcCCC----------------HHHHHHHHHHHhcCCEEEEEe-CCCCCCCh------HHHH
Confidence 679999999999999999667664 789999999999999999998 74322110 0111
Q ss_pred cCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCCCCCC
Q 004233 325 THDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404 (766)
Q Consensus 325 ~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~ 404 (766)
.......+.|...|++++..+.. ...|.|++|||++ ++++||.|++. |-..
T Consensus 330 ~~~~~~~~~l~~~gv~i~~~~~g----------------~~lH~K~~iiD~~--------~~~vGS~N~~~-rS~~---- 380 (438)
T COG1502 330 AAYRAYLKELLEAGVKVYEYPGG----------------AFLHSKVMIIDDR--------TVLVGSANLDP-RSLR---- 380 (438)
T ss_pred HHHHHHHHHHHHhCCEEEEecCC----------------CcceeeEEEEcCC--------EEEEeCCcCCH-hHHH----
Confidence 11234567778899998654320 1279999999999 99999999998 4211
Q ss_pred CccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHHhhh
Q 004233 405 LFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA 459 (766)
Q Consensus 405 l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gp-av~dl~~~F~~~W~~~ 459 (766)
-..++.+.++.+ .+.++...|..+|...
T Consensus 381 ---------------------------lN~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 381 ---------------------------LNFEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred ---------------------------HhhhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 112577888888 6788999998777654
No 133
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.86 E-value=5.2e-09 Score=123.69 Aligned_cols=102 Identities=29% Similarity=0.470 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~ 95 (766)
.|.|+|.+..|.+|+..|..+. +||||.+.+..+.+.+
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k~vyk 1076 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEKSVYK 1076 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecceeccc
Confidence 6899999999999999887776 9999999999988999
Q ss_pred eccccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
|+++++++||+|||+|.++|..- ...+.|.|+|+|... ++.||++.++|+.+..+.....-.+|
T Consensus 1077 tkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l 1142 (1227)
T COG5038 1077 TKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL 1142 (1227)
T ss_pred ccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec
Confidence 99999999999999999999964 455999999999887 89999999999999977665554555
No 134
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.85 E-value=1.9e-08 Score=115.08 Aligned_cols=97 Identities=22% Similarity=0.434 Sum_probs=79.2
Q ss_pred CCCcEEEEEECC----eeeeeeccccCCCCCeeeeeEEEeecCCCce-EEEEEEEcCCCC-CceeEEEeccceeccCCce
Q 004233 79 TSDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (766)
Q Consensus 79 ~~dpyv~~~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (766)
..||||+|.+-+ ....+|++..|+.||+|||+|.|++..|+.- |+|.|+|+|... ++++|+..||+..|..|..
T Consensus 495 ~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 495 PPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred CCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc
Confidence 389999999932 3446999999999999999999999888655 899999999876 9999999999999998754
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEE
Q 004233 153 ISRWYDIIAPSGSPPKPGASIQLELKF 179 (766)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~g~i~l~l~~ 179 (766)
..+|....|.+.. ..+|.+++.|
T Consensus 575 ---~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 575 ---AVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred ---eEeccCCCcCCCC-CCeeEEEEEe
Confidence 4678777776643 4577777765
No 135
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.7e-09 Score=119.48 Aligned_cols=105 Identities=32% Similarity=0.569 Sum_probs=84.4
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--e
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~--~ 91 (766)
+|.|+|.|++|++|+.++..+. +||||++.+- . .
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~~l~~~~~~~ 334 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKVTLLDGDKRL 334 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEEEEecCCcee
Confidence 5899999999999999887665 9999999982 2 4
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~ 164 (766)
.+.||.+.+++.||+|||+|.|.++.. ...|.|+|||+|.++ +++||.+.+.... .+.....|..++...+
T Consensus 335 ~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~ 409 (421)
T KOG1028|consen 335 SKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPR 409 (421)
T ss_pred eeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCcc
Confidence 567999999999999999999988764 235999999999998 7899988876654 3444555666654443
No 136
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.84 E-value=2.3e-08 Score=112.69 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCC--CC
Q 004233 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDP--KT 637 (766)
Q Consensus 560 ~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~--d~ 637 (766)
..++.+++++|++|+++|||++.||-.+ +. +.+++.+|.+++++.+||+|+|+++.+-.... ..
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D------~~--------g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~ 99 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDD------EA--------GREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGA 99 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCC------ch--------HHHHHHHHHHHHhcCCCcEEEEEEEccccccccccc
Confidence 4688999999999999999999888743 21 56788888888777789999999995311000 00
Q ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHcc--cCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeE
Q 004233 638 NTVQEILFWQSQTMQMMYSVVAQELREMQ--VDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (766)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~G--v~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~ 715 (766)
... .... .++..|.+++ +++ .+|.... ......+.+|.|+
T Consensus 100 ~~~-----~~~~-------~~~~~l~~~~~gv~v------~~f~~p~--------------------~~~e~~gr~HrKi 141 (451)
T PRK09428 100 AAS-----NTNA-------DWYCEMAQEYPGVDI------PVYGVPV--------------------NTREALGVLHLKG 141 (451)
T ss_pred CCC-----CcCH-------HHHHHHHHhCCCceE------EEcCCcc--------------------ccchhhhhceeeE
Confidence 000 0001 1255676654 654 3453210 0111235689999
Q ss_pred EEEeeeEeEEccCCcCcccCCCC--CcccceeeeeCCcc
Q 004233 716 MIVDDEYVIMGSANINQRSMAGS--KDTEIAMGSYQPHH 752 (766)
Q Consensus 716 ~IVDd~~~~IGSaNld~RS~~~n--~d~E~~v~i~~p~~ 752 (766)
+||||++++.| +|+++..+... ......+.|.+|.+
T Consensus 142 ~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dry~~i~g~~l 179 (451)
T PRK09428 142 FIIDDTVLYSG-ASLNNVYLHQHDKYRYDRYHLIRNAEL 179 (451)
T ss_pred EEECCCEEEec-ccccHHHhcCCcccCcceEEEEeCchH
Confidence 99999999999 89998666420 11344777888874
No 137
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.79 E-value=4.7e-08 Score=111.82 Aligned_cols=97 Identities=22% Similarity=0.446 Sum_probs=79.9
Q ss_pred CCCcEEEEEECC----eeeeeeccccCCCCCeeeeeEEEeecCCCce-EEEEEEEcCCCC-CceeEEEeccceeccCCce
Q 004233 79 TSDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (766)
Q Consensus 79 ~~dpyv~~~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (766)
..||||+|++.+ ....||+++.++.+|+|||+|.|++..++.. |+|.|+|+|... ++++|+..||+..|..|..
T Consensus 478 ~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 478 PPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred CCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc
Confidence 389999999942 3456999999999999999999998887655 899999998876 8999999999999998754
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEE
Q 004233 153 ISRWYDIIAPSGSPPKPGASIQLELKF 179 (766)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~g~i~l~l~~ 179 (766)
..+|....|.+.. ..+|.+.+.|
T Consensus 558 ---~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 558 ---AFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred ---eEEccCCCcCCCC-CeeEEEEEEe
Confidence 4678777776643 4577777765
No 138
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.79 E-value=2.5e-08 Score=114.08 Aligned_cols=98 Identities=26% Similarity=0.484 Sum_probs=81.2
Q ss_pred CCcEEEEEECC----eeeeeec-cccCCCCCeeeeeEEEeecCCCce-EEEEEEEcCCCC-CceeEEEeccceeccCCce
Q 004233 80 SDPYVTVVVPQ----ATVARTR-VLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (766)
Q Consensus 80 ~dpyv~~~~~~----~~~~~T~-~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (766)
+||||.|++.+ +...+|+ +..|+.+|.|+|+|.|++..|+.- |+|.|+|+|..+ |+|+|+..||++.+..|..
T Consensus 641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR 720 (746)
T KOG0169|consen 641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR 720 (746)
T ss_pred CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCcee
Confidence 89999999843 4567999 556799999999999999999876 899999999998 9999999999999998854
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEEe
Q 004233 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (766)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~g~i~l~l~~~~ 181 (766)
. ++|.+..|.. -...+|.+.+.+.+
T Consensus 721 h---VpL~~~~G~~-~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 721 H---VPLLSREGEA-LSSASLFVRIAIVE 745 (746)
T ss_pred e---eeecCCCCcc-ccceeEEEEEEEec
Confidence 4 5676666654 34678888888764
No 139
>PLN02228 Phosphoinositide phospholipase C
Probab=98.79 E-value=5.3e-08 Score=111.09 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=82.5
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCee-eeeEEEeecCCCce-EEEEEEEcCCCC-CceeEEEeccceeccCCce
Q 004233 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (766)
Q Consensus 80 ~dpyv~~~~~~----~~~~~T~~~~~~~~P~w-~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (766)
.||||+|++.+ ....||++++++.+|+| ||+|.|++..++.. |+|.|+|+|..+ ++++|++.||++.|..|..
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR 537 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGVR 537 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCee
Confidence 89999999832 34469999999999999 99999999888655 899999999776 8999999999999987754
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEEec
Q 004233 153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (766)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~g~i~l~l~~~~~ 182 (766)
.++|....|... ..++|.+++.+.+.
T Consensus 538 ---~VpL~~~~G~~l-~~atLfv~~~~~~~ 563 (567)
T PLN02228 538 ---AVRLHDRAGKAY-KNTRLLVSFALDPP 563 (567)
T ss_pred ---EEEccCCCCCCC-CCeEEEEEEEEcCc
Confidence 467877777664 35789999988765
No 140
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.75 E-value=3e-08 Score=108.29 Aligned_cols=120 Identities=29% Similarity=0.521 Sum_probs=99.4
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~ 94 (766)
|+|.|-|+|..||+||-||..+. ..|.||+|++.+.+ .
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~ 38 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F 38 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence 46889999999999999997665 38999999999866 5
Q ss_pred eeccccCCCCCeee-eeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccC----------CceeEEEEEc
Q 004233 95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT----------GELISRWYDI 159 (766)
Q Consensus 95 ~T~~~~~~~~P~w~-e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~----------~~~~~~~~~l 159 (766)
||.|..+++||.|| +-|.|.+... ...|.|.++|+|..+ ++.||++.|+++.+-. |..+..|+++
T Consensus 39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 99999999999998 6689998874 345999999999999 8999999999987642 3457899999
Q ss_pred cCCCCCCCCCCceEEEEEEE
Q 004233 160 IAPSGSPPKPGASIQLELKF 179 (766)
Q Consensus 160 ~~~~~~~~~~~g~i~l~l~~ 179 (766)
...-. .-.|+|.+-++.
T Consensus 119 fdtih---girgeinvivkv 135 (1169)
T KOG1031|consen 119 FDTIH---GIRGEINVIVKV 135 (1169)
T ss_pred ceecc---cccceeEEEEEE
Confidence 65422 247888887764
No 141
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.69 E-value=6.4e-08 Score=85.54 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=57.4
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEeccceecc
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~ 148 (766)
+||||.|++++..++||++ +.||.|||+|.|++. ....++|.|||+.....-.||..-+.+++|.
T Consensus 23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence 8999999999987889998 489999999999995 4557999999997766788999999998886
No 142
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.56 E-value=4.7e-08 Score=66.03 Aligned_cols=26 Identities=54% Similarity=0.685 Sum_probs=24.5
Q ss_pred eEEeeeEEEEeeeEeEEccCCcCccc
Q 004233 709 IYVHAKGMIVDDEYVIMGSANINQRS 734 (766)
Q Consensus 709 ~~~HsK~~IVDd~~~~IGSaNld~RS 734 (766)
.++|+|+||+|+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 48999999999999999999999986
No 143
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.54 E-value=3e-08 Score=66.38 Aligned_cols=25 Identities=60% Similarity=1.093 Sum_probs=17.1
Q ss_pred ecccceEEEEccCCCCCCcceEEEEccccCCCc
Q 004233 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (766)
Q Consensus 364 ~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~ 396 (766)
+++|+|++|||++ +||+||+|++++
T Consensus 3 ~~~H~K~~vvD~~--------~a~vGg~nl~~~ 27 (28)
T PF00614_consen 3 GSHHQKFVVVDDR--------VAFVGGANLCDG 27 (28)
T ss_dssp BEE---EEEETTT--------EEEEE---SSHH
T ss_pred cceeeEEEEEcCC--------EEEECceecCCC
Confidence 5799999999999 999999999874
No 144
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.39 E-value=1.3e-06 Score=99.33 Aligned_cols=102 Identities=23% Similarity=0.359 Sum_probs=76.9
Q ss_pred CCcEEEEEECC-----eeeeeeccccCCCCCeee-eeEEEeecCCCce-EEEEEEEcCCCC-CceeEEEeccceeccCCc
Q 004233 80 SDPYVTVVVPQ-----ATVARTRVLKNSQEPVWN-EHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (766)
Q Consensus 80 ~dpyv~~~~~~-----~~~~~T~~~~~~~~P~w~-e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~ 151 (766)
.-|||+|++-+ .....|.|..|++||+|| |+|+|.|..|.-- |+|.|+|.|.++ ..|||++..|+..|..|-
T Consensus 1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc
Confidence 56999999943 344456677789999999 9999999998754 999999999999 589999999999998764
Q ss_pred eeEEEEEccCCCCCCCCCCceEEEEEEEEecCCC
Q 004233 152 LISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (766)
Q Consensus 152 ~~~~~~~l~~~~~~~~~~~g~i~l~l~~~~~~~~ 185 (766)
. -.+|...-... ....+|.+.+...|+...
T Consensus 1165 R---sVpLkN~ySEd-lELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1165 R---SVPLKNGYSED-LELASLLVFIEMRPVLES 1194 (1267)
T ss_pred e---eeecccCchhh-hhhhhheeeeEeccccCc
Confidence 2 24553222221 234668888888776544
No 145
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=98.33 E-value=1.3e-05 Score=85.33 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=75.1
Q ss_pred ccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhc--CCEEEEEEecCC-CccCccc
Q 004233 240 PGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLVWDDK-TSHDKLG 316 (766)
Q Consensus 240 ~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~r--GV~VrILv~D~~-gs~~~~~ 316 (766)
|.++|+.+...|.+|+++|+|++-++-- ..+.+++.|..|-.. -.+|.||+ |.. |....+.
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~lasLYlG~---------------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~ 100 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLASLYLGK---------------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPN 100 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeeeeccch---------------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcc
Confidence 3889999999999999999998765422 127888999888665 79999997 875 4333211
Q ss_pred cccCCccccCcHHHHhhhcCCCceEEec--ccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCC
Q 004233 317 VKTPGVMATHDEETKKFFKHSSVNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (766)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gi~v~~~--~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~ 394 (766)
....-+. ..-.++... .|++.++ |......-.+...+..-...-.|-|+.-+|+ -.++-|.|++
T Consensus 101 ~~s~llp---~~l~kkf~e--~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdd---------eviiSGanls 166 (469)
T KOG3964|consen 101 SCSALLP---VWLGKKFPE--RVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDD---------EVIISGANLS 166 (469)
T ss_pred cchhhch---HHHhhhhhh--hhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccH---------hhhcccccch
Confidence 1000000 001112222 3444433 2111100000000000112358999999999 4688999999
Q ss_pred CcccC
Q 004233 395 DGRYD 399 (766)
Q Consensus 395 ~~r~d 399 (766)
++++.
T Consensus 167 ~dyfT 171 (469)
T KOG3964|consen 167 NDYFT 171 (469)
T ss_pred hhhhc
Confidence 96653
No 146
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=98.32 E-value=4e-06 Score=87.46 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=100.2
Q ss_pred cCCeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHH
Q 004233 210 KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGE 289 (766)
Q Consensus 210 ~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~ 289 (766)
.-+++++|..- |....| .+=+.+-+.|++|++-|-|.+-.|++- .-|.|
T Consensus 117 g~Tr~~vy~qP--p~~~~p-------------~IKE~vR~~I~~A~kVIAIVMD~FTD~----------------dIf~D 165 (284)
T PF07894_consen 117 GVTRATVYFQP--PKDGQP-------------HIKEVVRRMIQQAQKVIAIVMDVFTDV----------------DIFCD 165 (284)
T ss_pred CCceEEEEeCC--CCCCCC-------------CHHHHHHHHHHHhcceeEEEeeccccH----------------HHHHH
Confidence 34689999874 222223 345678889999999999999888762 46666
Q ss_pred HHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcC--------CCceEEecccCCCcccchhhhcccc
Q 004233 290 LLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKH--------SSVNCVLAPRYASSKLSYFKQQIVG 361 (766)
Q Consensus 290 aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~--------~gi~v~~~~~~~~~~~~~~~~~~~~ 361 (766)
+|.++-+|||-|+||+ |..+... +++...+ .+++|+.-.. ..+..+....
T Consensus 166 LleAa~kR~VpVYiLL-D~~~~~~----------------Fl~Mc~~~~v~~~~~~nmrVRsv~G-----~~y~~rsg~k 223 (284)
T PF07894_consen 166 LLEAANKRGVPVYILL-DEQNLPH----------------FLEMCEKLGVNLQHLKNMRVRSVTG-----CTYYSRSGKK 223 (284)
T ss_pred HHHHHHhcCCcEEEEe-chhcChH----------------HHHHHHHCCCChhhcCCeEEEEecC-----CeeecCCCCe
Confidence 5555559999999998 8875432 1222222 2334432100 0011111112
Q ss_pred ceecccceEEEEccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEe
Q 004233 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (766)
Q Consensus 362 ~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~ 441 (766)
+-...|+|+++||+. .++.|+.-++|--. .-| +.+-..+.
T Consensus 224 ~~G~~~eKF~lvD~~--------~V~~GSYSFtWs~~--~~~------------------------------r~~~~~~t 263 (284)
T PF07894_consen 224 FKGQLKEKFMLVDGD--------KVISGSYSFTWSSS--RVH------------------------------RNLVTVLT 263 (284)
T ss_pred eeCcccceeEEEecc--------cccccccceeeccc--ccc------------------------------cceeEEEe
Confidence 345689999999999 99999998888211 111 24677899
Q ss_pred ChHHHHHHHHHHHHH
Q 004233 442 GPAAYDVLINFEQRW 456 (766)
Q Consensus 442 Gpav~dl~~~F~~~W 456 (766)
|.+|..+.+.|....
T Consensus 264 Gq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 264 GQIVESFDEEFRELY 278 (284)
T ss_pred ccccchHhHHHHHHH
Confidence 999999999998665
No 147
>PF13918 PLDc_3: PLD-like domain
Probab=98.31 E-value=1.7e-05 Score=77.42 Aligned_cols=60 Identities=33% Similarity=0.520 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhccceEEEecccccccc------CCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 004233 561 SIQTAYIQAIRSAQHFIYIENQYFLGSS------YAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD 634 (766)
Q Consensus 561 si~~a~~~lI~~Ak~~IyIe~~yFi~~~------~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~ 634 (766)
.-.+|++..|++|+++|||+-.-|.|.. .+||. +..|++-| ++. |||+||+|+..|...+
T Consensus 82 ~DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~-----------ID~ALR~A-A~~--R~V~VRlLIS~W~ht~ 147 (177)
T PF13918_consen 82 LDLDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPV-----------IDDALRRA-AIE--RGVKVRLLISCWKHTD 147 (177)
T ss_pred cHHHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchh-----------HHHHHHHH-HHH--cCCeEEEEEeecCCCC
Confidence 3468999999999999999988777642 37773 34444433 334 5699999999986543
No 148
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.30 E-value=2.4e-07 Score=104.13 Aligned_cols=91 Identities=23% Similarity=0.406 Sum_probs=80.0
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-----
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----- 90 (766)
+.+|.|.|+-|+++.+.|..+. +||||.|++..
T Consensus 946 ~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~fp 983 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFRFP 983 (1103)
T ss_pred ccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEeccccccc
Confidence 4578899999999999998887 99999999954
Q ss_pred -eeeeeeccccCCCCCeeeeeEEEeecCCC-c----eEEEEEEEcCCCC-CceeEEEeccceecc
Q 004233 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPL-S----NLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (766)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~----~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (766)
...+||+|++.|+||+|+|+|.|.|+... . .|.|+|+|+|-.. +||-|.+.+.|+++.
T Consensus 984 ~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 984 AVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 35679999999999999999999998742 2 2899999999998 999999999999876
No 149
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.17 E-value=7.3e-07 Score=59.75 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=17.9
Q ss_pred eEEeeeEEEEeeeEeEEccCCcCccc
Q 004233 709 IYVHAKGMIVDDEYVIMGSANINQRS 734 (766)
Q Consensus 709 ~~~HsK~~IVDd~~~~IGSaNld~RS 734 (766)
...|+|++|||+++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 47899999999999999999999874
No 150
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.04 E-value=3.2e-06 Score=77.09 Aligned_cols=112 Identities=28% Similarity=0.432 Sum_probs=81.3
Q ss_pred EEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEE---CCeeeee
Q 004233 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV---PQATVAR 95 (766)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~---~~~~~~~ 95 (766)
|.|.|++|-+|+.-.. ..+..+...|-..+++ .++||++.+ ++....+
T Consensus 1 lsv~I~RA~GLqaAA~----------------~la~~~~~l~y~a~VG-------------VN~yv~i~lSFl~~~e~r~ 51 (143)
T cd08683 1 LSVQIHRASGLQAAAR----------------ALAEQDPSLQYSATVG-------------VNSYVTIHLSFLPEKELRR 51 (143)
T ss_pred CeEEeehhhhHHHHHH----------------HHhhhCcccccceecc-------------cceEEEEEeccCCCCceee
Confidence 4678888888863211 1112233444555566 999999996 4566779
Q ss_pred eccccCCCCCeeeeeEEEeecC----------------CCceEEEEEEEcCCC-----------CCceeEEEeccceecc
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVF-----------GAQIIGTAAIPAHTIA 148 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~----------------~~~~l~~~v~d~~~~-----------~~~~iG~~~~~l~~~~ 148 (766)
|+++.+|.+|+|+-++.|+++- ....+.|+||+.+.- +|-.||++.||+.++.
T Consensus 52 TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll 131 (143)
T cd08683 52 TRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLL 131 (143)
T ss_pred ccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHh
Confidence 9999999999999999999761 123489999986532 2568999999999987
Q ss_pred C-CceeEEEEEc
Q 004233 149 T-GELISRWYDI 159 (766)
Q Consensus 149 ~-~~~~~~~~~l 159 (766)
. ...+.+||++
T Consensus 132 ~~rsGitGW~pi 143 (143)
T cd08683 132 TKRSGITGWYPI 143 (143)
T ss_pred hcccCccccccC
Confidence 4 4568899975
No 151
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=98.02 E-value=0.00058 Score=73.08 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=85.1
Q ss_pred cchHHHHHHHHHhcc-----ceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCcc
Q 004233 241 GTCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~-----~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~ 315 (766)
-+-|+.+++.|++|- .+|.++-|....+ ..|.++|.+||+.|=+|.+++ .-...+.
T Consensus 17 Y~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~~----------------S~iv~aLi~AA~nGK~Vtv~v-ELkARFD-- 77 (352)
T PF13090_consen 17 YESFDPVVDFLREAAEDPDVLAIKITLYRVASN----------------SPIVNALIEAAENGKQVTVLV-ELKARFD-- 77 (352)
T ss_dssp TB-TCHHHHHHHHHCC-TTEEEEEEEESSS-TT-----------------HHHHHHHHHHHTT-EEEEEE-STTSSST--
T ss_pred ccccHHHHHHHHHHhcCCCccEEEEEEEecCCC----------------CHHHHHHHHHHHcCCEEEEEE-EEecccc--
Confidence 445778899999984 6888888876553 799999999999999999998 3221111
Q ss_pred ccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCC
Q 004233 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (766)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~ 395 (766)
. ..+-.+.+.|+++|++|.+. .+ .+--|.|+++|=.+ .+..-...+.+|.=|...
T Consensus 78 -----E---e~Ni~Wa~~Le~aGv~ViyG--~~--------------glKvHaK~~lI~R~-e~~~~~~Y~hlgTGNyNe 132 (352)
T PF13090_consen 78 -----E---ENNIHWAKRLEEAGVHVIYG--VP--------------GLKVHAKICLIVRR-EGGGLRRYAHLGTGNYNE 132 (352)
T ss_dssp -----T---CCCCCCCHHHHHCT-EEEE----T--------------T-EE--EEEEEEEE-ETTEEEEEEEEESS-SST
T ss_pred -----H---HHHhHHHhhHHhcCeEEEcC--CC--------------ChhheeeEEEEEEE-eCCcEEEEEEEcCCCcCc
Confidence 0 01113456788999999863 11 12379999999665 111234577777766544
Q ss_pred cccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHH
Q 004233 396 GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR 455 (766)
Q Consensus 396 ~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gp-av~dl~~~F~~~ 455 (766)
. + ..-+-|+++.-..+ ...|+...|...
T Consensus 133 ~-------------------------------T-Ar~YtD~~l~Ta~~~i~~D~~~~F~~l 161 (352)
T PF13090_consen 133 K-------------------------------T-ARIYTDLSLFTADPEIGADVAKLFNYL 161 (352)
T ss_dssp T-------------------------------H-CCCEEEEEEEE--HHHHHHHHHHHHHH
T ss_pred c-------------------------------c-hhheecceeecCCHHHHHHHHHHHHHH
Confidence 0 0 12456988887776 568899888643
No 152
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.01 E-value=1.6e-06 Score=97.71 Aligned_cols=90 Identities=20% Similarity=0.460 Sum_probs=71.8
Q ss_pred eeeccccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCC-------------------------------------CCc
Q 004233 94 ARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVF-------------------------------------GAQ 135 (766)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~-------------------------------------~~~ 135 (766)
.-|+|+++|+||.|+|+|.|.|..- ...+.+-+||+|-- .||
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 3678889999999999999999875 45599999997611 168
Q ss_pred eeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceEEEEEEEEecCCC
Q 004233 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (766)
Q Consensus 136 ~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l~l~~~~~~~~ 185 (766)
|+|.+.|||.+|.. ...++||.| .+.....+..|.++|.+.......+
T Consensus 259 FLGciNipl~EiP~-~Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 259 FLGCINIPLAEIPP-DGLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred cccccccchhcCCc-chHHHHhcc-CcccccccccceEEEEEEEeeeccc
Confidence 99999999999974 357799999 5555555789999999987765443
No 153
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.90 E-value=6.7e-05 Score=88.23 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=83.3
Q ss_pred HHHHHHHHhccc-----eEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCC
Q 004233 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (766)
Q Consensus 564 ~a~~~lI~~Ak~-----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~ 638 (766)
..++++|++|.+ +|.|+..-+... ..++.+|.+|+++| ++|++++.-.+- .|..
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~ii~aL~~Aa~~G--k~V~v~veLkAr--fde~ 400 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTLYRTSKD-----------------SPIIDALIEAAENG--KEVTVVVELKAR--FDEE 400 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEecCC-----------------cHHHHHHHHHHHcC--CEEEEEEEehhh--ccch
Confidence 578889999998 899986444322 24667777886655 999999994321 1111
Q ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEE
Q 004233 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (766)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (766)
+ .+ ...+.|.++|++| +|.+ ....+|+|+++|
T Consensus 401 ~----------ni-----~wa~~le~aG~~v-------iyg~--------------------------~~~k~H~K~~li 432 (672)
T TIGR03705 401 A----------NI-----RWARRLEEAGVHV-------VYGV--------------------------VGLKTHAKLALV 432 (672)
T ss_pred h----------hH-----HHHHHHHHcCCEE-------EEcC--------------------------CCeeeeeEEEEE
Confidence 1 00 1156788999986 5643 135899999999
Q ss_pred eee-------EeEEccCCcCcccCCCCCcccceeeeeCCcc
Q 004233 719 DDE-------YVIMGSANINQRSMAGSKDTEIAMGSYQPHH 752 (766)
Q Consensus 719 Dd~-------~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~ 752 (766)
|++ ++.|||.|+|......- ++++++..++++
T Consensus 433 ~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~i 471 (672)
T TIGR03705 433 VRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPEI 471 (672)
T ss_pred EEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChHH
Confidence 974 69999999999966533 888888888866
No 154
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.83 E-value=1.4e-05 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.2
Q ss_pred ecccceEEEEccCCCCCCcceEEEEccccCCC
Q 004233 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (766)
Q Consensus 364 ~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~ 395 (766)
.++|+|++|||++ .+++||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 3589999999998 99999999987
No 155
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.80 E-value=1.5e-05 Score=94.29 Aligned_cols=108 Identities=20% Similarity=0.424 Sum_probs=88.1
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC
Q 004233 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (766)
Q Consensus 10 ~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~ 89 (766)
.++.|-+|+|.|-|.-+++|+-..- |.. .||||+..+-
T Consensus 1517 LsIsY~~~~LtImV~H~K~L~~Lqd-----------------------------g~~-------------P~pyVK~YLl 1554 (1639)
T KOG0905|consen 1517 LSISYNNGTLTIMVMHAKGLALLQD-----------------------------GQD-------------PDPYVKTYLL 1554 (1639)
T ss_pred EEEEEcCceEEEEhhhhcccccccC-----------------------------CCC-------------CCcceeEEec
Confidence 3557889999999999999964332 222 9999999993
Q ss_pred ----CeeeeeeccccCCCCCeeeeeEEEe-ecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 90 ----QATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 90 ----~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
++.+.||+++.+|.+|.|||.++.. ++.. ...|.++||..+.+. +.++|.+.++|..+....+...||.|
T Consensus 1555 Pdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1555 PDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred CCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 2567799999999999999999887 4332 245999999998887 89999999999998866666699998
No 156
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.68 E-value=7e-05 Score=85.12 Aligned_cols=109 Identities=17% Similarity=0.374 Sum_probs=84.3
Q ss_pred CCCcEEEEEECCe---eeeeeccccCCCCCeeeeeEEEeecCC----------------CceEEEEEEEc-CCCC-Ccee
Q 004233 79 TSDPYVTVVVPQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDD-DVFG-AQII 137 (766)
Q Consensus 79 ~~dpyv~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~----------------~~~l~~~v~d~-~~~~-~~~i 137 (766)
.+|||+++...+. ...+|+++++|.+|.|+|.|.|.+... ...|++.+|++ +... ++|+
T Consensus 150 ~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~Fl 229 (800)
T KOG2059|consen 150 QCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFL 229 (800)
T ss_pred CCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhc
Confidence 3999999998542 225999999999999999999998765 23488999984 4444 8999
Q ss_pred EEEeccceeccCCceeEEEEEccCC-CCC---CCCCCceEEEEEEEEecCCCCc
Q 004233 138 GTAAIPAHTIATGELISRWYDIIAP-SGS---PPKPGASIQLELKFTPCDKNPL 187 (766)
Q Consensus 138 G~~~~~l~~~~~~~~~~~~~~l~~~-~~~---~~~~~g~i~l~l~~~~~~~~p~ 187 (766)
|++.+|+...........||.|... .|. ....-|.+++.+.|+-....|+
T Consensus 230 Gevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlps 283 (800)
T KOG2059|consen 230 GEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLPS 283 (800)
T ss_pred eeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceeccH
Confidence 9999999988866677889999533 222 2345688999999987666554
No 157
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.52 E-value=0.0007 Score=70.92 Aligned_cols=133 Identities=16% Similarity=0.197 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHH-HcCCCeEEEEEecCCCCCCCCC
Q 004233 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKI-RANERFAVYVIIPMWPEGDPKT 637 (766)
Q Consensus 559 ~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~-~~grgV~V~Illp~~~~g~~d~ 637 (766)
..+|.+.+.++|++|++-|=|.+=-|. ..+|..-|.+|+ + |+|-|+||++..
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FT------------------D~dIf~DLleAa~k--R~VpVYiLLD~~------- 184 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFT------------------DVDIFCDLLEAANK--RGVPVYILLDEQ------- 184 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeeccc------------------cHHHHHHHHHHHHh--cCCcEEEEechh-------
Confidence 357999999999999999999988887 234555566665 4 569999999951
Q ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEE
Q 004233 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (766)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~I 717 (766)
..+.+ ...-.++++...-...+++-.+ .|..+.. .......+-+|.|+|+
T Consensus 185 -~~~~F---------------l~Mc~~~~v~~~~~~nmrVRsv-------------~G~~y~~-rsg~k~~G~~~eKF~l 234 (284)
T PF07894_consen 185 -NLPHF---------------LEMCEKLGVNLQHLKNMRVRSV-------------TGCTYYS-RSGKKFKGQLKEKFML 234 (284)
T ss_pred -cChHH---------------HHHHHHCCCChhhcCCeEEEEe-------------cCCeeec-CCCCeeeCcccceeEE
Confidence 11111 2222233443211112222211 1111110 0011234689999999
Q ss_pred EeeeEeEEccCCcCcccCCCCCcccceeeeeCC
Q 004233 718 VDDEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (766)
Q Consensus 718 VDd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p 750 (766)
||.+.++.||.-|++.|-..+ .-+..++.+.
T Consensus 235 vD~~~V~~GSYSFtWs~~~~~--r~~~~~~tGq 265 (284)
T PF07894_consen 235 VDGDKVISGSYSFTWSSSRVH--RNLVTVLTGQ 265 (284)
T ss_pred Eecccccccccceeecccccc--cceeEEEecc
Confidence 999999999999999888744 5555555543
No 158
>PLN02866 phospholipase D
Probab=97.46 E-value=0.0005 Score=82.77 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHhccceEEEeccccccccCCC-CccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEec
Q 004233 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAW-PSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 628 (766)
Q Consensus 560 ~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~-p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp 628 (766)
...+.++.++|.+||++|||+.-.|.|..+.+ |.. ..+...+...|.++++ +||+|+||+-
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~------D~~g~RL~~lL~rKAk--rGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH------DHESSRLDSLLEAKAK--QGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC------CchHHHHHHHHHHHHH--CCCEEEEEEE
Confidence 56789999999999999999643333221111 100 0114566677777765 5599999754
No 159
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.44 E-value=9.1e-05 Score=79.36 Aligned_cols=98 Identities=15% Similarity=0.305 Sum_probs=80.0
Q ss_pred CCcEEEEEEC----CeeeeeeccccCCCCCeeeeeEEEeecCC------------CceEEEEEEEcCCCC--CceeEEEe
Q 004233 80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVFG--AQIIGTAA 141 (766)
Q Consensus 80 ~dpyv~~~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~~~------------~~~l~~~v~d~~~~~--~~~iG~~~ 141 (766)
.|-||++++. .....+|.++++|.+|.|+|.|.+.+... ...++|++|++..|- |.++|++.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 6789998872 23456999999999999999999998872 234999999998884 89999999
Q ss_pred ccceeccCCceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 004233 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (766)
Q Consensus 142 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i~l~l~~~ 180 (766)
+.|..|...+.++..++|.+. .+ ..+|.|.++++..
T Consensus 468 ikle~Len~cei~e~~~l~DG-RK--~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDG-RK--AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceecccc-cc--ccCCeeEEEEEEe
Confidence 999999988899999998433 22 2578888888753
No 160
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.012 Score=67.22 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=64.4
Q ss_pred CccchHHHHHHHHHhccc-----eEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccC
Q 004233 239 KPGTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHD 313 (766)
Q Consensus 239 ~~~~~f~~l~~~I~~A~~-----~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~ 313 (766)
-|-+.|+.+++.|++|-. .|-++-|.... ..+|.+||++||+.|-+|-+|| .=...+.
T Consensus 349 HPYeSF~~Vv~fl~qAA~DP~VLAIKqTLYRt~~----------------dSpIV~ALi~AA~nGKqVtvlV-ELkARFD 411 (696)
T COG0855 349 HPYESFEPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVRALIDAAENGKQVTVLV-ELKARFD 411 (696)
T ss_pred CchhhhHHHHHHHHHhhcCCCeEEEEEEEEecCC----------------CCHHHHHHHHHHHcCCeEEEEE-EEhhhcC
Confidence 345678999999999963 34555554333 3799999999999999999998 2111100
Q ss_pred ccccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccC
Q 004233 314 KLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ 376 (766)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~ 376 (766)
. ..+-.+.+.|+.+|++|.+- .. -+..|.|+++|=.+
T Consensus 412 -------E---E~NI~WAk~LE~AGvhVvyG--~~--------------glKtHAKm~lVvRr 448 (696)
T COG0855 412 -------E---EANIHWAKRLERAGVHVVYG--VV--------------GLKTHAKMLLVVRR 448 (696)
T ss_pred -------h---hhhhHHHHHHHhCCcEEEec--cc--------------ceeeeeeEEEEEEe
Confidence 0 11124567789999999852 11 12379999998554
No 161
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=5e-05 Score=79.49 Aligned_cols=126 Identities=22% Similarity=0.279 Sum_probs=93.1
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----ee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----~~ 92 (766)
..++.+|.+|++|.+|+..+. .|||++..+.. ..
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl~ 130 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKLN 130 (362)
T ss_pred hhcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhhh
Confidence 457899999999999998887 99999999843 23
Q ss_pred eeeeccccCCCCCeeeeeEEEeecCC----CceEEEEEEEcCCCC-CceeEEEeccceeccCCc--eeEEEEEccCCCCC
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISRWYDIIAPSGS 165 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~--~~~~~~~l~~~~~~ 165 (766)
..+|++..++.||.|+|+.....-.. .+.+.+.|.|.+.+. ++++|+..+++..+.... ....|+.-..+.+.
T Consensus 131 slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~r 210 (362)
T KOG1013|consen 131 SLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSER 210 (362)
T ss_pred hhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCccc
Confidence 35888999999999999887764332 345889999999887 899999999998886432 23334443222111
Q ss_pred ---C-CCCCceEEEEEEEEecCC
Q 004233 166 ---P-PKPGASIQLELKFTPCDK 184 (766)
Q Consensus 166 ---~-~~~~g~i~l~l~~~~~~~ 184 (766)
+ .++.|+|.+++.|.....
T Consensus 211 ad~~~~E~rg~i~isl~~~s~~~ 233 (362)
T KOG1013|consen 211 ADRDEDEERGAILISLAYSSTTP 233 (362)
T ss_pred ccccchhhccceeeeeccCcCCC
Confidence 1 256889999998766543
No 162
>PF13918 PLDc_3: PLD-like domain
Probab=97.31 E-value=0.00056 Score=66.92 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHH-hcCCEEEEEE
Q 004233 244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV 305 (766)
Q Consensus 244 f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa-~rGV~VrILv 305 (766)
.++++..|+.|+++|+|+...+.|-... ..+...| ..|.++|++|| .|||+||+|+
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~-~~~~~YW-----P~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRY-SKPNRYW-----PVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeec-CCCCCcc-----hhHHHHHHHHHHHcCCeEEEEE
Confidence 6899999999999999999988885321 1222334 58999999887 8999999998
No 163
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.00076 Score=75.59 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=68.1
Q ss_pred CCcEEEEEEC------CeeeeeeccccCCCCCeeeeeEEEeecCCCc----eEEEEEEEcCCCC-CceeEEEeccceecc
Q 004233 80 SDPYVTVVVP------QATVARTRVLKNSQEPVWNEHFNIPLAHPLS----NLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (766)
Q Consensus 80 ~dpyv~~~~~------~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~----~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (766)
--|||+|.+- ..++..|++..|+-.|.+||+|.|-+..... .|.|.|.|+-... |..+|.+.++|.++.
T Consensus 1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence 6799999982 2456788899999999999999999987643 3899999987776 899999999999998
Q ss_pred CCceeEEEEEc
Q 004233 149 TGELISRWYDI 159 (766)
Q Consensus 149 ~~~~~~~~~~l 159 (766)
.......|++|
T Consensus 1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred hcCceeEeeec
Confidence 77777889999
No 164
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.00033 Score=73.47 Aligned_cols=100 Identities=24% Similarity=0.333 Sum_probs=78.0
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----~ 91 (766)
..-|.|++++|..|-.+|..+- +||||.+.+.. .
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~~ 269 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGKK 269 (362)
T ss_pred CCceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcchh
Confidence 3568899999999998887665 99999999842 3
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
-+.||.+.+++.+|+||++|.+.+.+.. ..+.|.|||.+.-+ .+++|-..+.+ +..++...+|+.-
T Consensus 270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRC 339 (362)
T ss_pred hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc--cccchhhcCcccc
Confidence 4569999999999999999999998864 34899999999875 89999765533 3334445555443
No 165
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.00081 Score=71.78 Aligned_cols=109 Identities=23% Similarity=0.385 Sum_probs=86.4
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----~ 91 (766)
.|.|+|.|++|++|..+.-.. + .++|||+|.+-. .
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k--------------------------------------~---~~apyVkVYlL~~g~c~ 306 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSK--------------------------------------S---LPAPYVKVYLLENGFCI 306 (405)
T ss_pred cCceeEEEEecccccccCCcc--------------------------------------c---ccCceeEEEEcCCCcee
Confidence 378999999999997543211 1 399999999832 3
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEE-cCCCC-CceeEEEeccceeccCCc-eeEEEEEccCCCCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD-DDVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS 165 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d-~~~~~-~~~iG~~~~~l~~~~~~~-~~~~~~~l~~~~~~ 165 (766)
.+.+|+...+|..|.+.++..|.-..+.+.|.+.||- ..... +.|+|.+++-++++.... ....||++...+..
T Consensus 307 ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl 383 (405)
T KOG2060|consen 307 AKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL 383 (405)
T ss_pred cccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence 4569999999999999999999988888889999995 34444 689999999999998766 67799999655443
No 166
>PLN02352 phospholipase D epsilon
Probab=97.00 E-value=0.0027 Score=74.98 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCC----cCcHHHHHHHHHhc--CCEEEEEE
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG----DLTLGELLKYKSEE--GVRVLLLV 305 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~----~~~l~~aL~~aa~r--GV~VrILv 305 (766)
.+...+.+++|++||+.|||+.=+|....+...... ..+. +..|.++|.+|.++ +-+|.|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~---~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDN---HCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhcccccccccc---ccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 678899999999999999998544433211110000 0000 13677777777655 67888877
No 167
>PLN02964 phosphatidylserine decarboxylase
Probab=96.99 E-value=0.001 Score=77.70 Aligned_cols=84 Identities=20% Similarity=0.361 Sum_probs=66.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCCCce-EEEEEEEcCCCC-CceeEEEeccceeccCCce--eEE
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL--ISR 155 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~--~~~ 155 (766)
.|+|..+..-+.++.||.+.++|.+|+||+...|.+...... ..|.|||++.++ ++.+|.+.++|..+...+. ...
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 789887777666778999999999999999999998876544 799999999998 9999999999888764432 112
Q ss_pred EEEccCCC
Q 004233 156 WYDIIAPS 163 (766)
Q Consensus 156 ~~~l~~~~ 163 (766)
-|.+.++.
T Consensus 148 aF~lfD~d 155 (644)
T PLN02964 148 SFDLLDPS 155 (644)
T ss_pred HHHHHCCC
Confidence 24554554
No 168
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=96.90 E-value=0.003 Score=74.63 Aligned_cols=151 Identities=18% Similarity=0.157 Sum_probs=74.9
Q ss_pred CCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcC--CEEEEEE--ecCCC
Q 004233 235 GKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLV--WDDKT 310 (766)
Q Consensus 235 g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rG--V~VrILv--~D~~g 310 (766)
|....+...-.+.+.+|++|++.|||+.=.|.....-..... -.. +..|..-+.+|.++| -+|+|++ |=++-
T Consensus 559 g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~~~--n~v--~~ela~rIv~a~ra~e~frVYIVIPL~PgfE 634 (887)
T KOG1329|consen 559 GINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDSVL--NKV--GDELALRIVKAIRAGEKFRVYIVIPLWPGFE 634 (887)
T ss_pred CCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCccc--chH--HHHHHHHHHHHHhcCCceEEEEEEeCCcccc
Confidence 333444667789999999999999997332322110000000 011 145555556665655 6777776 21110
Q ss_pred ccCcccccc--------CCccccCcHHHHhhhcCCCceEE-ecccCCCcccchh---hhccccceecccceEEEEccCCC
Q 004233 311 SHDKLGVKT--------PGVMATHDEETKKFFKHSSVNCV-LAPRYASSKLSYF---KQQIVGTIFTHHQKCVLVDTQAS 378 (766)
Q Consensus 311 s~~~~~~~~--------~~~~~~~~~~~~~~l~~~gi~v~-~~~~~~~~~~~~~---~~~~~~~~~r~H~K~~VVD~~~~ 378 (766)
.-..++-.. ..-|........+.|++.|+.-. +-....+..+..+ .+...+...--|.|+||||++
T Consensus 635 G~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD~-- 712 (887)
T KOG1329|consen 635 GDDTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDDE-- 712 (887)
T ss_pred CCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccccccceEEEEEEeeeeEEecCC--
Confidence 000000000 00000011244566776676621 0000000001111 111223344589999999999
Q ss_pred CCCcceEEEEccccCCCccc
Q 004233 379 GNNRKITAFIGGIDLCDGRY 398 (766)
Q Consensus 379 ~~~~~~~a~vGG~Ni~~~r~ 398 (766)
+++|||.||.+ |.
T Consensus 713 ------~vIIGSANINq-RS 725 (887)
T KOG1329|consen 713 ------YVIIGSANINQ-RS 725 (887)
T ss_pred ------EEEEeecccch-hh
Confidence 99999999999 54
No 169
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.82 E-value=0.00072 Score=79.77 Aligned_cols=87 Identities=23% Similarity=0.426 Sum_probs=74.6
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCee-eeee
Q 004233 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART 96 (766)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~-~~~T 96 (766)
.++|.+++|-+|.+.|..+. +||||.+.+++.. .-++
T Consensus 614 LvrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d~~ 651 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLDRA 651 (1105)
T ss_pred eEEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhhhh
Confidence 36799999999999887776 9999999998743 3477
Q ss_pred ccccCCCCCeeeeeEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEecccee
Q 004233 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHT 146 (766)
Q Consensus 97 ~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~ 146 (766)
..+.+|+||+|.+-|.+...-+. ..+++.|||+|..+ ++.||+..++|+.
T Consensus 652 ~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 652 HYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred hcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 88999999999999998877664 45999999999998 9999999998864
No 170
>PLN03008 Phospholipase D delta
Probab=96.67 E-value=0.0035 Score=74.33 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=41.1
Q ss_pred cCCCCccCc-cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCc----CcHHHHHHHHHh--cCCEEEEE
Q 004233 232 LDGGKLYKP-GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGD----LTLGELLKYKSE--EGVRVLLL 304 (766)
Q Consensus 232 ~~~g~~y~~-~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~----~~l~~aL~~aa~--rGV~VrIL 304 (766)
|.+|+...- ..+..+.+++|++|++.|||+.=+|....+...... ..|.. ..|..+|.++.+ .+-+|.|+
T Consensus 556 l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~---~~~~~n~I~~eia~kI~~ki~~~e~f~V~IV 632 (868)
T PLN03008 556 LECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYR---DAGADNLIPMELALKIVSKIRAKERFAVYVV 632 (868)
T ss_pred cccccccchhhhHHHHHHHHHHhhccEEEEehhhhhcccccccccc---ccccccchhHHHHHHHHHHHhCCCCCEEEEE
Confidence 344444432 456789999999999999998544443321110000 00111 346666666644 47888888
Q ss_pred E
Q 004233 305 V 305 (766)
Q Consensus 305 v 305 (766)
+
T Consensus 633 i 633 (868)
T PLN03008 633 I 633 (868)
T ss_pred E
Confidence 7
No 171
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.018 Score=56.43 Aligned_cols=141 Identities=19% Similarity=0.254 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~ 320 (766)
+-....+...|+.|.+...++.|+...+ -.-+.+.|..+..+||++|||. +..-..
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~sG---------------~sll~~~L~d~~~Kgvkgkilt-s~Ylnf-------- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITESG---------------LSLLFDLLLDLVNKGVKGKILT-SDYLNF-------- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeCcc---------------HHHHHHHHHHHhcCCceEEEec-ccccCc--------
Confidence 4578899999999999888888875432 3688999999999999999997 443222
Q ss_pred CccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCC
Q 004233 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (766)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (766)
+.+...++.+.-.+|++++.... +..+|.|=.|.-.. ....|++|+.|+++.-..
T Consensus 94 ----TdP~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt- 148 (198)
T COG3886 94 ----TDPVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALT- 148 (198)
T ss_pred ----cCHHHHHHHHhhhccceEEEecC---------------ccccccceeEEEec-----ceEEEEEccchhhhhhcc-
Confidence 12234555555566888764221 12368888776443 234899999999994432
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCce-eeeeEEeChHHHHHHHHHHHHHhh
Q 004233 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWRK 458 (766)
Q Consensus 401 ~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~-D~~v~v~Gpav~dl~~~F~~~W~~ 458 (766)
.. ..|. -+...-.|.+|..+...|...|..
T Consensus 149 ~n----------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 149 VN----------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred cC----------------------------HHHHhhhccccccchHHHHHHHHHHHHHh
Confidence 11 1221 133345788899999999999973
No 172
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.63 E-value=0.0014 Score=55.91 Aligned_cols=70 Identities=14% Similarity=0.310 Sum_probs=53.2
Q ss_pred EECCeeeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEE
Q 004233 87 VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD 158 (766)
Q Consensus 87 ~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~ 158 (766)
.++..-..||++...+.||+|.|+|.|.+.-.. -.|.|+|+. ..-....||.+.+.+.++.. ++..+|.+
T Consensus 30 tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 30 TLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred ecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCCH-HHhhhhhc
Confidence 345556679999999999999999999987643 348899987 23237899999999988763 34556654
No 173
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.45 E-value=0.0046 Score=69.82 Aligned_cols=113 Identities=24% Similarity=0.320 Sum_probs=74.8
Q ss_pred CCcEEEEEEC--C---eeeeeeccccCCCCCeeeeeEEEeecC-----CCceEEEEEEEcCCCC-CceeEEEeccceecc
Q 004233 80 SDPYVTVVVP--Q---ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (766)
Q Consensus 80 ~dpyv~~~~~--~---~~~~~T~~~~~~~~P~w~e~~~~~~~~-----~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (766)
+|||..+.-- . ..+.+|.+++++++|.|. .|.+++.. ....+++.+||.+..+ +++||++..++..+.
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 9999998752 2 456799999999999997 56665443 2456899999999988 699999999999886
Q ss_pred CCceeEEEEEccCCCCC----CCCCCceEEEEEEEEecCCCCccccccCCCC
Q 004233 149 TGELISRWYDIIAPSGS----PPKPGASIQLELKFTPCDKNPLYRQGIAGDP 196 (766)
Q Consensus 149 ~~~~~~~~~~l~~~~~~----~~~~~g~i~l~l~~~~~~~~p~f~~gi~~~~ 196 (766)
. ......+.++.+..+ ..+..|++.+.- ......+.|...++++.
T Consensus 236 ~-~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~--~~~~~~~sfld~i~gg~ 284 (529)
T KOG1327|consen 236 E-PGSPNQIMLINPKKKAKKKSYKNSGQLILDR--FTSLDQYSFLDYIAGGE 284 (529)
T ss_pred c-cCCcccccccChhhhhhhhcccccceEEehh--eeehhhhhHHHHHccCc
Confidence 4 222222344444331 123455554432 22334566777766633
No 174
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.98 E-value=0.032 Score=57.98 Aligned_cols=50 Identities=30% Similarity=0.268 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEec
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D 307 (766)
+...+.+.++|++|+++|+|..|. .. -..+.+.|.+|.+|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~--~~---------------l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP--EF---------------LEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G--GG---------------HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH--HH---------------HHHHHHHHHHHHHCCCEEEEEEeC
Confidence 677899999999999999999873 11 168999999999999999999843
No 175
>PLN02270 phospholipase D alpha
Probab=95.91 E-value=0.018 Score=68.45 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecC-CCCCCCCC----cCcHHHHHHHHHh--cCCEEEEEE
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TRPLPRGG----DLTLGELLKYKSE--EGVRVLLLV 305 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~-~~~~~~g~----~~~l~~aL~~aa~--rGV~VrILv 305 (766)
.++..+++.+|++|+++|||+.=+|.......... ..+...|. ...|...|.++.+ .+-+|.|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 57889999999999999999865555432111000 00001111 1345556666644 478899887
No 176
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.82 E-value=0.039 Score=64.82 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=74.4
Q ss_pred EeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--
Q 004233 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (766)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~-- 90 (766)
.+.-+++.|+|+++.-|..++ ...||+|.+-+
T Consensus 699 gvIA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP 732 (1189)
T KOG1265|consen 699 GVIAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLP 732 (1189)
T ss_pred ceEEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCC
Confidence 356788999999999887544 66899998832
Q ss_pred ----eeeeeecccc-CCCCCeeee-eEEEe--ecCCCceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCC
Q 004233 91 ----ATVARTRVLK-NSQEPVWNE-HFNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 91 ----~~~~~T~~~~-~~~~P~w~e-~~~~~--~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
.+..||+++. |+.||+|+| .|.|. +.+....|+|.||+.++ .+||+--+|+..+..|... ..|...
T Consensus 733 ~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEgg---K~ig~RIlpvd~l~~GYrh---v~LRse 806 (1189)
T KOG1265|consen 733 TDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEGG---KFIGQRILPVDGLNAGYRH---VCLRSE 806 (1189)
T ss_pred chhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccCC---ceeeeeccchhcccCccee---EEecCC
Confidence 2345788776 599999985 67886 33445569999998754 7999999999998877543 344444
Q ss_pred CCCC
Q 004233 163 SGSP 166 (766)
Q Consensus 163 ~~~~ 166 (766)
++.+
T Consensus 807 ~Nqp 810 (1189)
T KOG1265|consen 807 SNQP 810 (1189)
T ss_pred CCCc
Confidence 4443
No 177
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=95.75 E-value=0.0022 Score=75.91 Aligned_cols=101 Identities=22% Similarity=0.249 Sum_probs=75.3
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~ 95 (766)
+-.+++.|.+|+.|..+++-+. +|||+.+.+-++.+ .
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~------------------------------------------sdp~a~v~f~~qs~-~ 241 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDE------------------------------------------SDPDAAVEFCGQSK-E 241 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccC------------------------------------------CCchhhhhcccccc-e
Confidence 3446667778888887776665 99999999987664 8
Q ss_pred eccccCCCCCeeeeeEEEeecC----------CCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEcc
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAH----------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~----------~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~ 160 (766)
|-++.+|+||.|+++..|.-.. .-..+.|+|||.+..+ ++++|.......-... .+.-.|+++.
T Consensus 242 T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~ 316 (1105)
T KOG1326|consen 242 TEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTM 316 (1105)
T ss_pred eEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEee
Confidence 9999999999999999886211 1223789999999988 9999987664433332 3455788884
No 178
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.42 E-value=0.39 Score=45.58 Aligned_cols=104 Identities=18% Similarity=0.283 Sum_probs=68.7
Q ss_pred CcEEEEEECCee--eeeecccc-CCCCCeeeeeEEEeecC----C-----CceEEEEEEEcCCCCC-ceeEEEeccceec
Q 004233 81 DPYVTVVVPQAT--VARTRVLK-NSQEPVWNEHFNIPLAH----P-----LSNLEIQVKDDDVFGA-QIIGTAAIPAHTI 147 (766)
Q Consensus 81 dpyv~~~~~~~~--~~~T~~~~-~~~~P~w~e~~~~~~~~----~-----~~~l~~~v~d~~~~~~-~~iG~~~~~l~~~ 147 (766)
-.||....+... ...|.... ....-.|||+|.+++.- . ...+.|.|+.....+. ..+|++.|.|.++
T Consensus 25 ~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey 104 (143)
T PF10358_consen 25 KVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEY 104 (143)
T ss_pred EEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHh
Confidence 345555444432 23444333 35678999999988442 1 2338899988754443 5999999999999
Q ss_pred cCC--ceeEEEEEccCCCCCCCCCCceEEEEEEEEecCCCCcc
Q 004233 148 ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLY 188 (766)
Q Consensus 148 ~~~--~~~~~~~~l~~~~~~~~~~~g~i~l~l~~~~~~~~p~f 188 (766)
... .....-++|... .+....|.+++.+.+....+.|
T Consensus 105 ~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~~~ 143 (143)
T PF10358_consen 105 ANEDEEPITVRLLLKKC----KKSNATLSISISLSELREDPDF 143 (143)
T ss_pred hCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCCCC
Confidence 853 455566666332 2467899999999988776653
No 179
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.83 E-value=0.57 Score=45.58 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=45.7
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeeeeEEEeecCCC----ceEEEEEEEcCCCC-----CceeEEEeccce
Q 004233 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (766)
Q Consensus 80 ~dpyv~~~~--~~~~~---~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~-----~~~iG~~~~~l~ 145 (766)
+|-||++.+ +++.. ..|+.+.. .++.|||-.+|++.-.. ..|.|++|+....+ ...||.+.++|-
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 678888876 33222 13443333 67999999999977543 34999999865421 357999999886
Q ss_pred ec
Q 004233 146 TI 147 (766)
Q Consensus 146 ~~ 147 (766)
+.
T Consensus 105 d~ 106 (158)
T cd08398 105 DY 106 (158)
T ss_pred CC
Confidence 53
No 180
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.64 E-value=0.38 Score=52.53 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=78.7
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCC--------CceEEEEEEEcCC-CC-CceeEEEeccceec--
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDV-FG-AQIIGTAAIPAHTI-- 147 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~--------~~~l~~~v~d~~~-~~-~~~iG~~~~~l~~~-- 147 (766)
..-.|...+++.. ..|..+..+..|.||..+...+... ...|++++|-.|. .+ -+.||.+.++|...
T Consensus 18 ~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~ 96 (340)
T PF12416_consen 18 HPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV 96 (340)
T ss_pred ccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence 5567788888865 4888999999999999999887652 3459999999883 33 68999999999888
Q ss_pred -cCC--ceeEEEEEccCCCCCCCCCCceEEEEEEEEecCC
Q 004233 148 -ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (766)
Q Consensus 148 -~~~--~~~~~~~~l~~~~~~~~~~~g~i~l~l~~~~~~~ 184 (766)
..+ ....+||+|++.+++-.+...+|.+.+.......
T Consensus 97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 444 4566899998774443345667888887766554
No 181
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=94.25 E-value=0.15 Score=55.03 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccC
Q 004233 606 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE 685 (766)
Q Consensus 606 ~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~ 685 (766)
.++.+|.+|++.| -+|.+++-..+ ..|..+. +.| .+.|.++|++| +|.+
T Consensus 51 ~iv~aLi~AA~nG--K~Vtv~vELkA--RFDEe~N---i~W------------a~~Le~aGv~V-------iyG~----- 99 (352)
T PF13090_consen 51 PIVNALIEAAENG--KQVTVLVELKA--RFDEENN---IHW------------AKRLEEAGVHV-------IYGV----- 99 (352)
T ss_dssp HHHHHHHHHHHTT---EEEEEESTTS--SSTTCCC---CCC------------CHHHHHCT-EE-------EE-------
T ss_pred HHHHHHHHHHHcC--CEEEEEEEEec--cccHHHH---hHH------------HhhHHhcCeEE-------EcCC-----
Confidence 5777888888766 67888887543 2232221 124 45688999987 6754
Q ss_pred CccccccCCCCCccccccCCccceEEeeeEEEEe-------eeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 686 APKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD-------DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVD-------d~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
....+|||+++|= .+++.+|+-|+|......= +.++++.-+|+++
T Consensus 100 ---------------------~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~i~ 151 (352)
T PF13090_consen 100 ---------------------PGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPEIG 151 (352)
T ss_dssp ---------------------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HHHH
T ss_pred ---------------------CChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHHHH
Confidence 2357999999986 3699999999999887643 7888888888765
No 182
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=91.71 E-value=0.9 Score=44.92 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=44.4
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeeeeeEEEeecCCC----ceEEEEEEEcCCCC-----------------
Q 004233 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG----------------- 133 (766)
Q Consensus 80 ~dpyv~~~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~----------------- 133 (766)
.+-||++.+ ++.. ...|+.+..+.++.|||.+.|++.-.. ..|.|+||+....+
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~ 106 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKD 106 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCc
Confidence 667888766 4432 225555555678999999999877543 33999999864321
Q ss_pred CceeEEEecccee
Q 004233 134 AQIIGTAAIPAHT 146 (766)
Q Consensus 134 ~~~iG~~~~~l~~ 146 (766)
...||.+.++|-+
T Consensus 107 ~~~ig~~n~~LFd 119 (173)
T cd08693 107 DNPIAWVNTMVFD 119 (173)
T ss_pred ceEEEEEeEEEEc
Confidence 3577777776654
No 183
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.57 E-value=0.49 Score=49.79 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=78.7
Q ss_pred CCceeEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEE
Q 004233 8 DKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVV 87 (766)
Q Consensus 8 ~~~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~ 87 (766)
+...+.-..|.|.+.+..+++|.-.. |.+.-+.+-||.++
T Consensus 42 d~l~~~s~tGiL~~H~~~GRGLr~~p----------------------------------------~~kglt~~~ycVle 81 (442)
T KOG1452|consen 42 DHLRLVSSTGILYFHAYNGRGLRMTP----------------------------------------QQKGLTVCFYCVLE 81 (442)
T ss_pred ceeeeecccceEEEEEecccccccCh----------------------------------------hccCceeeeeeeee
Confidence 44556677899999999999996221 11122488999999
Q ss_pred ECCeeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCC
Q 004233 88 VPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (766)
Q Consensus 88 ~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 166 (766)
.+.+..+||++......-.|.|+|.+.+.... .+.+-||.|+... +++.=.-.+.+..+.... -.+.+-+ .
T Consensus 82 ~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~-vl~~lvySW~pq~RHKLC~~g~l~~~~v~rqs-pd~~~Al------~ 153 (442)
T KOG1452|consen 82 PDRQHPARTRVRSSGPGFAWAEDFKHDVVNIE-VLHYLVYSWPPQRRHKLCHLGLLEAFVVDRQS-PDRVVAL------Y 153 (442)
T ss_pred ecccCccccccccCCCCccchhhceeecccce-eeeEEEeecCchhhccccccchhhhhhhhhcC-Ccceeee------e
Confidence 99888888988888888899999999876543 5667777766543 443222233333333211 1111222 0
Q ss_pred CCCCceEEEEEEEE
Q 004233 167 PKPGASIQLELKFT 180 (766)
Q Consensus 167 ~~~~g~i~l~l~~~ 180 (766)
.++.|++-+.+.+.
T Consensus 154 lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 154 LEPRGQPPLRLPLA 167 (442)
T ss_pred cccCCCCceecccC
Confidence 14567777777553
No 184
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=91.55 E-value=1.8 Score=41.80 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=68.5
Q ss_pred cEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCCC--------------ceEEEEEEEcCCCC-CceeEEEecccee
Q 004233 82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIPAHT 146 (766)
Q Consensus 82 pyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--------------~~l~~~v~d~~~~~-~~~iG~~~~~l~~ 146 (766)
-.+-+.+.+++ .+|+.+..+.+|.++|.|-|.+.... ..+.+.|.-.|..+ ..++|.-.+....
T Consensus 36 ~~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~ 114 (156)
T PF15627_consen 36 FTLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRK 114 (156)
T ss_pred EEEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHH
Confidence 34444556655 69999999999999999999988652 23777777777665 5788888777766
Q ss_pred ccCCcee--EEEEEccCCCCCCCCCCceEEEEEEEEecC
Q 004233 147 IATGELI--SRWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (766)
Q Consensus 147 ~~~~~~~--~~~~~l~~~~~~~~~~~g~i~l~l~~~~~~ 183 (766)
+...... ..-..|........-+.|-|.++++..|..
T Consensus 115 vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 115 VLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 6532221 233444333322213689999999988864
No 185
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.17 E-value=0.72 Score=44.93 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=51.1
Q ss_pred CCCcEEEEEE--CCee---eeeeccccCCCCCeeeeeEEEeecCCC----ceEEEEEEEcCCCC-CceeEEEeccceec
Q 004233 79 TSDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (766)
Q Consensus 79 ~~dpyv~~~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~-~~~iG~~~~~l~~~ 147 (766)
.+|-||++.+ ++.. ...|+.+.-+..+.|||-..|+|.-.. ..|.|+||+.+..+ ...||.+.++|-+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3888999987 3322 226666666778999999999987653 34999999987654 67899999887654
No 186
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=91.04 E-value=0.55 Score=54.28 Aligned_cols=94 Identities=19% Similarity=0.311 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccC
Q 004233 606 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE 685 (766)
Q Consensus 606 ~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~ 685 (766)
.++.++++|++.| -+|.+|+--.+ ..|..+. .+| .+.|.++|+.| +|.+
T Consensus 385 pIV~ALi~AA~nG--KqVtvlVELkA--RFDEE~N---I~W------------Ak~LE~AGvhV-------vyG~----- 433 (696)
T COG0855 385 PIVRALIDAAENG--KQVTVLVELKA--RFDEEAN---IHW------------AKRLERAGVHV-------VYGV----- 433 (696)
T ss_pred HHHHHHHHHHHcC--CeEEEEEEEhh--hcChhhh---hHH------------HHHHHhCCcEE-------Eecc-----
Confidence 5677888887776 67777776422 2222111 122 57789999986 6744
Q ss_pred CccccccCCCCCccccccCCccceEEeeeEEEEe-------eeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 686 APKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD-------DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVD-------d~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
.....|+|+++|= .+++-+|+-|.+..+...= +.++++.-+|+++
T Consensus 434 ---------------------~glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriY--TD~sl~Tad~~i~ 485 (696)
T COG0855 434 ---------------------VGLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 485 (696)
T ss_pred ---------------------cceeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeee--eechhccCCHHHH
Confidence 1246899999885 3589999999999988743 7888888888875
No 187
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=90.51 E-value=1.5 Score=43.39 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecC
Q 004233 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (766)
Q Consensus 560 ~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~ 629 (766)
..|+..+...|..|+++..+. -|+.... -..+...+..+ .++||+++|++..
T Consensus 38 e~il~~Li~~l~k~~ef~IsV--aFit~sG--------------~sll~~~L~d~--~~Kgvkgkilts~ 89 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV--AFITESG--------------LSLLFDLLLDL--VNKGVKGKILTSD 89 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE--EEeeCcc--------------HHHHHHHHHHH--hcCCceEEEeccc
Confidence 468899999999999887777 4654311 12333344455 4577999999985
No 188
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.45 E-value=1.8 Score=37.65 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=61.1
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEc
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
++..+.+.+++..++.|.-... .+..|+++|+|.+... ..|+|.||=.|- ....|...+.|++...+ .-.++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdRs-RELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELERS-RELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeecc-cEEEEEEEEecc--hhhhhheeeEhhhhccc----ceecc
Confidence 6788899999988888877655 5789999999999774 479999986544 34566666777763321 11233
Q ss_pred cCCCCCCCCCCceEEEEEEE
Q 004233 160 IAPSGSPPKPGASIQLELKF 179 (766)
Q Consensus 160 ~~~~~~~~~~~g~i~l~l~~ 179 (766)
.+.|.+..++.|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 467899999988
No 189
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=89.32 E-value=1.5 Score=42.41 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=47.9
Q ss_pred CCcEEEEEE--CCe---eeeeeccccCCCCCeeeeeEEEeecCCC----ceEEEEEEEcCCCC---CceeEEEeccceec
Q 004233 80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG---AQIIGTAAIPAHTI 147 (766)
Q Consensus 80 ~dpyv~~~~--~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~---~~~iG~~~~~l~~~ 147 (766)
.+-||++.+ ++. ....|.....+.++.|||...|++.... ..|.|++|+.+..+ ...||.+.++|=+.
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 667888866 332 2224444444478999999999976543 34999999876543 58999999988764
Q ss_pred c
Q 004233 148 A 148 (766)
Q Consensus 148 ~ 148 (766)
.
T Consensus 108 ~ 108 (156)
T cd08380 108 K 108 (156)
T ss_pred c
Confidence 3
No 190
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=87.67 E-value=3.4 Score=40.73 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=44.5
Q ss_pred CCcEEEEEE--CCeee---eeecccc--C--CCCCeeeeeEEEeecCCC----ceEEEEEEEcCCCC----------Cce
Q 004233 80 SDPYVTVVV--PQATV---ARTRVLK--N--SQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG----------AQI 136 (766)
Q Consensus 80 ~dpyv~~~~--~~~~~---~~T~~~~--~--~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~----------~~~ 136 (766)
.|-||++.+ +++.. ..|+... + ...+.|||-..|++.-.. ..|.|++|+....+ ...
T Consensus 29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~ 108 (171)
T cd04012 29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE 108 (171)
T ss_pred ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence 778888877 33222 1333221 1 346789999999976533 34999999865432 468
Q ss_pred eEEEeccceec
Q 004233 137 IGTAAIPAHTI 147 (766)
Q Consensus 137 iG~~~~~l~~~ 147 (766)
||.+.++|=+.
T Consensus 109 lG~~~~~LFd~ 119 (171)
T cd04012 109 LGWVSLPLFDF 119 (171)
T ss_pred EEEEeEeeEcc
Confidence 89988888654
No 191
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=86.53 E-value=2.7 Score=40.03 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=47.0
Q ss_pred CcEEEEEE--CCe----eeeeeccccCC-CCCeeeeeEEEeecCC----CceEEEEEEEcCCCC-C----ceeEEEeccc
Q 004233 81 DPYVTVVV--PQA----TVARTRVLKNS-QEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-A----QIIGTAAIPA 144 (766)
Q Consensus 81 dpyv~~~~--~~~----~~~~T~~~~~~-~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~----~~iG~~~~~l 144 (766)
+.||++.+ +++ .+..|+...-+ .++.|||.+.|++.-. ...|.|+||..+..+ . ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 45677766 432 23366666666 7999999999997653 334999999987766 3 6899999988
Q ss_pred eecc
Q 004233 145 HTIA 148 (766)
Q Consensus 145 ~~~~ 148 (766)
-+..
T Consensus 83 Fd~~ 86 (142)
T PF00792_consen 83 FDYR 86 (142)
T ss_dssp B-TT
T ss_pred ECCC
Confidence 7653
No 192
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=84.05 E-value=8.4 Score=38.24 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=33.7
Q ss_pred CcEEEEEE--CCee--eeeeccccCCCCCeeeeeEEEeecCCC----ceEEEEEEEcC
Q 004233 81 DPYVTVVV--PQAT--VARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDD 130 (766)
Q Consensus 81 dpyv~~~~--~~~~--~~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~ 130 (766)
.-||++.+ +++. ..+|+....+.+|.|||-+.|++.... ..|.|+||+..
T Consensus 31 ~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 31 TVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 35666654 3321 125666666778999999999977654 34999999864
No 193
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=83.21 E-value=4.2 Score=39.95 Aligned_cols=73 Identities=14% Similarity=0.292 Sum_probs=58.8
Q ss_pred CCCCCCcEEEEEECCeeeeeeccccC--CCCCeeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEeccceecc
Q 004233 76 KIITSDPYVTVVVPQATVARTRVLKN--SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (766)
Q Consensus 76 ~~~~~dpyv~~~~~~~~~~~T~~~~~--~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~ 148 (766)
+.....-|+++.+.++.+.+|+...- ...-.++|.|.+.+..--..|.++||......+..|+++.+|+-...
T Consensus 33 ~~~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 33 RVQKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred HhhheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 33347789999999988888886654 44457799999999886678999999998867999999999886543
No 194
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=81.79 E-value=8.9 Score=34.14 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=34.8
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeeeeeEEEeecCCC----ceEEEEEEEcC
Q 004233 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDD 130 (766)
Q Consensus 80 ~dpyv~~~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~ 130 (766)
++-||++.+ ++.. ...|+.+.-+..+.|||-..|++.-.. ..|.|++|+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 478888877 3322 125555544666999999999877643 34999999854
No 195
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=81.62 E-value=4 Score=42.33 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecC
Q 004233 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (766)
Q Consensus 559 ~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~ 629 (766)
...|.+.+.++|++|++.|+|..+.=. ...+...|.++.+ |||+|.+++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~~~------------------l~~l~~~L~~a~~--rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPPEF------------------LEELRDELEEAVD--RGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-GGG------------------HHHHHHHHHHHHH--TT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCHHH------------------HHHHHHHHHHHHH--CCCEEEEEEeC
Confidence 468899999999999999999965421 2345556666655 55999999985
No 196
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=80.83 E-value=0.87 Score=52.02 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=29.0
Q ss_pred cceEEeeeEEEEee-------eEeEEccCCcCcccCCCC----------Ccccceeeee
Q 004233 707 FMIYVHAKGMIVDD-------EYVIMGSANINQRSMAGS----------KDTEIAMGSY 748 (766)
Q Consensus 707 ~~~~~HsK~~IVDd-------~~~~IGSaNld~RS~~~n----------~d~E~~v~i~ 748 (766)
.....|+|+++... .|+++||+||..-.|. . +|+|++|++.
T Consensus 345 ~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG-~~~~~~~~l~i~nyElGVl~~ 402 (443)
T PF06087_consen 345 SRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWG-KRSKNGSQLSIRNYELGVLFL 402 (443)
T ss_dssp TTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEE
T ss_pred CCcCcceEEEEEecCCCCCccceEEeCcccCCHHHhc-ccccCCceeeecceEEEEEEe
Confidence 35688999999987 4999999999987665 3 6899999993
No 197
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.43 E-value=3.9 Score=40.75 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=33.3
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCCc---eEEEEEEEcCCCC----CceeEEEecccee
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLS---NLEIQVKDDDVFG----AQIIGTAAIPAHT 146 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~---~l~~~v~d~~~~~----~~~iG~~~~~l~~ 146 (766)
....|.+..++.+|.|+|+|.+.++.+.. -|.|++++..... ...+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 44688888899999999999999987642 2899999865432 2688888888776
No 198
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=80.31 E-value=9.3 Score=38.24 Aligned_cols=53 Identities=23% Similarity=0.449 Sum_probs=39.1
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC---CceeEEEeccc
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG---AQIIGTAAIPA 144 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~---~~~iG~~~~~l 144 (766)
...+|.|...+.+|.|+|++.+.++... .-|.|++++..... ...+|-+.+||
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 3468899999999999999999998753 23888888754432 25566666666
No 199
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=79.93 E-value=17 Score=39.06 Aligned_cols=41 Identities=29% Similarity=0.327 Sum_probs=29.3
Q ss_pred eEEeeeEEEE-e---eeEeEEccCCcCc-ccCCCCCcccceeeeeCCc
Q 004233 709 IYVHAKGMIV-D---DEYVIMGSANINQ-RSMAGSKDTEIAMGSYQPH 751 (766)
Q Consensus 709 ~~~HsK~~IV-D---d~~~~IGSaNld~-RS~~~n~d~E~~v~i~~p~ 751 (766)
..+|+|+.+. . +..++||||||.. -.+. .+-.| .+++.|+.
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~~ 124 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDPN 124 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecChH
Confidence 4689999998 2 4489999999998 3333 25689 55555553
No 200
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=74.24 E-value=22 Score=32.18 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=50.8
Q ss_pred EEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCCC--------ceEEEEEEEcCCCCCceeEEEeccceeccC--Cce
Q 004233 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------SNLEIQVKDDDVFGAQIIGTAAIPAHTIAT--GEL 152 (766)
Q Consensus 83 yv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--------~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~--~~~ 152 (766)
||++.+-.-....|.++. +.+|.+|-+-.+.+.... ..+.++++..-......+|.+++++..+.. ++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566666443334666665 789999998888888752 348888887654446899999999999873 334
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEE
Q 004233 153 ISRWYDIIAPSGSPPKPGASIQLELKF 179 (766)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~g~i~l~l~~ 179 (766)
+..-..+.+..+. .-|+|...++.
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEe
Confidence 5555666555553 67888877764
No 201
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=73.18 E-value=5.3 Score=43.79 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCC
Q 004233 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (766)
Q Consensus 560 ~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~ 631 (766)
...++.+.+.|..||+.|+|++-|.-.. ..++++.+-.+++....++|.|+++..-
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 3578899999999999999999887521 5688889999999999999999999643
No 202
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=69.17 E-value=18 Score=36.13 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=32.2
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCCce---EEEEEEEcC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSN---LEIQVKDDD 130 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~---l~~~v~d~~ 130 (766)
..+.|.|...+.+|.|+|++.+.++..... |.|+.++.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 456888999999999999999998875432 889998865
No 203
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=66.85 E-value=9.1 Score=38.44 Aligned_cols=54 Identities=13% Similarity=0.213 Sum_probs=40.0
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCC--C---CceeEEEeccce
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVF--G---AQIIGTAAIPAH 145 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~--~---~~~iG~~~~~l~ 145 (766)
...+|-|.....+|.|+|++.+.|+... .-|.|++++.... + ...+|-+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4568889899999999999999998753 3388999876432 1 246677666663
No 204
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=64.88 E-value=6.7 Score=45.03 Aligned_cols=58 Identities=28% Similarity=0.395 Sum_probs=48.3
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCC-ceEEEEEEEcCCC----C-CceeEEEeccceeccC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVF----G-AQIIGTAAIPAHTIAT 149 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~----~-~~~iG~~~~~l~~~~~ 149 (766)
.+.+|.++.+.++|.|-+.|.+....+. +.|+|.++|.+.. . .+|+|++...++.+..
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence 4569999999999999999998877764 4599999997655 2 6999999999988763
No 205
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.37 E-value=3.4 Score=48.42 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=64.4
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccC-CceeEEEE
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWY 157 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~-~~~~~~~~ 157 (766)
.+||+.|.+.......+.+.+.+..|.|+++|.+.+.. ...+.|.|+...... +.+...+.+..+.+.. ......|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 89999999976555577778889999999999999544 446888888775443 4433334443333332 12334577
Q ss_pred EccCCCCCCCCCCceEEEEEEEEecCC
Q 004233 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (766)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~~~~~~~ 184 (766)
.+ ++.|++...+.++.+..
T Consensus 107 ~~--------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LI--------EELGTLLKPAALTGTLE 125 (694)
T ss_pred cc--------ccccceeeeecccCcCC
Confidence 65 34577887777766544
No 206
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=59.25 E-value=19 Score=35.71 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=31.9
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCCce---EEEEEEEcC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSN---LEIQVKDDD 130 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~---l~~~v~d~~ 130 (766)
....|.|...+.+|.|+|++.+.++..... |.|+.++.+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 456888999999999999999999876432 888888754
No 207
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=58.49 E-value=15 Score=36.39 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=36.1
Q ss_pred eeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCC-----C-CceeEEEecccee
Q 004233 95 RTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVF-----G-AQIIGTAAIPAHT 146 (766)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~-----~-~~~iG~~~~~l~~ 146 (766)
-|.++....+|.|+|++.+.++... .-|.|++++.+.. . ...+|-+.+||-+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444444489999999999997653 2288999986532 2 4677777776654
No 208
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=41.73 E-value=2.1e+02 Score=32.19 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=47.9
Q ss_pred ceEEEEEEEcCC-------CCCceeEEEeccceecc-CCc---eeEEEEEccCCCCC-CCCCCceEEEEEEEEecCCCCc
Q 004233 120 SNLEIQVKDDDV-------FGAQIIGTAAIPAHTIA-TGE---LISRWYDIIAPSGS-PPKPGASIQLELKFTPCDKNPL 187 (766)
Q Consensus 120 ~~l~~~v~d~~~-------~~~~~iG~~~~~l~~~~-~~~---~~~~~~~l~~~~~~-~~~~~g~i~l~l~~~~~~~~p~ 187 (766)
..|+|.||--.. .+.++||++.++|+--- .+. .+..|..+-..... ......+|+|.++-.| +|-
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep---DPR 171 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP---DPR 171 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC---CCe
Confidence 359999997332 23689999999987322 122 35679998322211 1124678999998666 455
Q ss_pred cccccCCCCCCCCc
Q 004233 188 YRQGIAGDPEHKGV 201 (766)
Q Consensus 188 f~~gi~~~~ef~~v 201 (766)
|.--.++++|..++
T Consensus 172 fVFQFdgepecSPQ 185 (460)
T PF06219_consen 172 FVFQFDGEPECSPQ 185 (460)
T ss_pred eEEEcCCccccCcE
Confidence 55444555554443
No 209
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=39.75 E-value=93 Score=32.18 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=33.4
Q ss_pred chHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEE
Q 004233 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (766)
Q Consensus 242 ~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv 305 (766)
...+.|.++.++--+.+ +.+-.+-+|..-.++.. . .+..+.++|.+|.++||+|...-
T Consensus 155 KHLreL~~~~~~G~ra~-vlf~v~r~d~~~F~P~~---e--~Dp~fa~~l~~A~~~GVev~~~~ 212 (235)
T COG1489 155 KHLRELERLAKEGYRAV-VLFLVLRSDITRFSPNR---E--IDPKFAELLREAIKAGVEVLAYR 212 (235)
T ss_pred HHHHHHHHHHHcCCceE-EEEEEecCCCcEECccc---c--cCHHHHHHHHHHHHcCCEEEEEE
Confidence 33444444444433333 33344445544333322 1 23789999999999999997764
No 210
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=37.19 E-value=40 Score=37.93 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=38.2
Q ss_pred eeEEEecccee-ccCCceeEEEEEccCCCCCCCCCCceEEEEEEEEecCCCCc
Q 004233 136 IIGTAAIPAHT-IATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPL 187 (766)
Q Consensus 136 ~iG~~~~~l~~-~~~~~~~~~~~~l~~~~~~~~~~~g~i~l~l~~~~~~~~p~ 187 (766)
.+|.+.||++. +..+...+.||++.+...+. ...|.| |+++|.-....|+
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~~VLp~ 51 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEENFVLPS 51 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeeceeccH
Confidence 48999999999 56677889999997665443 356777 8888887766665
No 211
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=34.93 E-value=56 Score=29.17 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHhcCCEEEEEEe
Q 004233 285 LTLGELLKYKSEEGVRVLLLVW 306 (766)
Q Consensus 285 ~~l~~aL~~aa~rGV~VrILv~ 306 (766)
-.|+++|.+++++|.+|.|- |
T Consensus 63 ~~i~~~Le~~~~~g~~V~v~-W 83 (99)
T PF09345_consen 63 MDIFDLLEDAAQKGGKVTVN-W 83 (99)
T ss_pred HHHHHHHHHHHhcCCcEEEE-E
Confidence 36777888889999999987 6
No 212
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=34.00 E-value=1.1e+02 Score=31.89 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEE
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv 305 (766)
......|.+++++ .+.+ |.+-...+|....++.. ..+..+.++|.+|+++||+|.-+.
T Consensus 156 ~kHL~eL~~l~~~-~ra~-vlF~vqr~d~~~f~p~~-----~~Dp~fa~~l~~A~~~GVev~a~~ 213 (232)
T TIGR00230 156 RKHLRELEEILKE-SRAV-VLFVVALPSVRAFSPNR-----EGDEEYYRLLRRAHEAGVEVRPYQ 213 (232)
T ss_pred HHHHHHHHHHHHh-CCEE-EEEEEeCCCCCEEeeCc-----ccCHHHHHHHHHHHHCCCEEEEEE
Confidence 3445566666666 4433 33333344444333322 123699999999999999998764
No 213
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=33.11 E-value=26 Score=42.41 Aligned_cols=39 Identities=31% Similarity=0.566 Sum_probs=31.2
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeeeEEEeecCC
Q 004233 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHP 118 (766)
Q Consensus 80 ~dpyv~~~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~ 118 (766)
...||+..++. ...++|+++.+|..|.||++|.+++-..
T Consensus 775 ~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s 817 (1112)
T KOG4269|consen 775 RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES 817 (1112)
T ss_pred cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc
Confidence 56677777632 4567999999999999999999987653
No 214
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=28.51 E-value=92 Score=35.46 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEe
Q 004233 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL 343 (766)
Q Consensus 285 ~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 343 (766)
..+-..|.+|.+.|.+.|++|.|+.... .++...+.|.+.||+|.+
T Consensus 370 ~vV~~ill~A~~~~k~frVvVVDSRP~~-------------EG~~~lr~Lv~~GinctY 415 (556)
T KOG1467|consen 370 SVVNMILLEAKELGKKFRVVVVDSRPNL-------------EGRKLLRRLVDRGINCTY 415 (556)
T ss_pred HHHHHHHHHHHHhCcceEEEEEeCCCCc-------------chHHHHHHHHHcCCCeEE
Confidence 4677888999999999999997876321 135788999999999975
No 215
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=27.24 E-value=4.2e+02 Score=29.03 Aligned_cols=93 Identities=12% Similarity=0.195 Sum_probs=61.2
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCC--eeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEecccee--ccCCceeEE
Q 004233 80 SDPYVTVVVPQATVARTRVLKNSQEP--VWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHT--IATGELISR 155 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~~~~~P--~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~--~~~~~~~~~ 155 (766)
...|++++.+... ..|..+.-+..- .-.|...+.+..-...|++.||-....+...||++.+.+.. |...-+...
T Consensus 74 khiyIef~~Gr~d-~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYD-FTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceE-EEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 5578888877644 355333322222 44566677777777789999998888888999999998865 233446678
Q ss_pred EEEccCCCCCCCCCCceEEEEE
Q 004233 156 WYDIIAPSGSPPKPGASIQLEL 177 (766)
Q Consensus 156 ~~~l~~~~~~~~~~~g~i~l~l 177 (766)
||.+ ...| +..+.|.|++
T Consensus 153 Wy~c-~kDG---q~~cRIqLSF 170 (508)
T PTZ00447 153 WFVC-FKDG---QEICKVQMSF 170 (508)
T ss_pred eEEE-ecCC---ceeeeEEEEe
Confidence 9998 4444 2345566654
No 216
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=27.02 E-value=1e+02 Score=32.29 Aligned_cols=48 Identities=38% Similarity=0.313 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEE
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv 305 (766)
.+.-..+.+.|+.|+++|.++.. ... -..+.+.|..+.+|||.|.+++
T Consensus 119 ~~i~~~~~e~i~~a~~ei~~~~~--~e~---------------~~~l~~~l~~~~~rgv~v~i~~ 166 (247)
T COG1378 119 EEIIEKIKEVINEAEKEIIIVLP--YEI---------------FKELKEPLIRALKRGVRVLILV 166 (247)
T ss_pred HHHHHHHHHHHHhhhcEEEEEeC--HHH---------------HHHhHHHHHHHHHccCeEEEEe
Confidence 56778999999999999998865 111 1688999999999999999997
No 217
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=25.71 E-value=1.4e+02 Score=32.23 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEe
Q 004233 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL 343 (766)
Q Consensus 285 ~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 343 (766)
..+.+.|+.|+.+|.++++++-++.... ....+.+.|++.||++.+
T Consensus 130 ~~v~~~l~~A~~~~k~~~V~VtESRP~~-------------eG~~~ak~L~~~gI~~~~ 175 (301)
T COG1184 130 KTVLEVLKTAADRGKRFKVIVTESRPRG-------------EGRIMAKELRQSGIPVTV 175 (301)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCcc-------------hHHHHHHHHHHcCCceEE
Confidence 7999999999999998888874444221 134678889999999764
No 218
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=24.18 E-value=5.4e+02 Score=27.76 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=20.3
Q ss_pred ccceEEEE-ccCCCCCCcceEEEEccccCCC
Q 004233 366 HHQKCVLV-DTQASGNNRKITAFIGGIDLCD 395 (766)
Q Consensus 366 ~H~K~~VV-D~~~~~~~~~~~a~vGG~Ni~~ 395 (766)
-|.|+.+. ... ....||+||.|++.
T Consensus 81 ~HgKlY~f~k~g-----~~~~a~IGSANfS~ 106 (296)
T PF09565_consen 81 YHGKLYIFSKNG-----KPFRAYIGSANFSQ 106 (296)
T ss_pred cccEEEEEecCC-----CceEEEEeeccccc
Confidence 69999999 332 34599999999998
No 219
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=23.50 E-value=1.2e+02 Score=31.85 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=47.9
Q ss_pred HHHHHhccceEEEE--EeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCcccc
Q 004233 248 CHAISEAHHLIYIV--GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMAT 325 (766)
Q Consensus 248 ~~~I~~A~~~I~I~--~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~ 325 (766)
++-+..+|..|-.. .|+++.+.-|...- ..-++++|..||+++...|+.+ -..... .
T Consensus 110 ~~~~~~sR~~IA~l~~~Fi~dg~~ILtHg~--------SRvVl~~L~~Aa~~~~~F~V~v-TEsrPd------------~ 168 (313)
T KOG1466|consen 110 IERARKSRQKIAMLAQDFITDGCTILTHGY--------SRVVLEVLLTAAQNKKRFRVYV-TESRPD------------G 168 (313)
T ss_pred HHHHHHHHHHHHHHhhhHhhCCCEEEEcch--------hHHHHHHHHHHHhcCceEEEEE-ecCCCC------------C
Confidence 44555566666433 44444443333221 2789999999999999999998 332111 1
Q ss_pred CcHHHHhhhcCCCceEEe
Q 004233 326 HDEETKKFFKHSSVNCVL 343 (766)
Q Consensus 326 ~~~~~~~~l~~~gi~v~~ 343 (766)
.+....+.|.+.||.+.+
T Consensus 169 sG~lm~~~L~~~~IPvtl 186 (313)
T KOG1466|consen 169 SGKLMAKELKKLGIPVTL 186 (313)
T ss_pred chhHHHHHHHhcCCCeEE
Confidence 234678889999999864
No 220
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=20.91 E-value=7.8e+02 Score=23.92 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=40.3
Q ss_pred CCcEEEEEEC---------Cee-eeeeccccC-----CCCCeeeeeEEEeecCCC----ceEEEEEEEcCCCC-CceeEE
Q 004233 80 SDPYVTVVVP---------QAT-VARTRVLKN-----SQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGT 139 (766)
Q Consensus 80 ~dpyv~~~~~---------~~~-~~~T~~~~~-----~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~~~~-~~~iG~ 139 (766)
.+-||+-.+. +.. .+.|.+.+. ...-.||-.|.+.+.... ..|.|+||..|.++ +.+.|-
T Consensus 17 ~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GY 96 (168)
T PF07162_consen 17 DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGY 96 (168)
T ss_pred CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEE
Confidence 5567776661 112 345554432 345689988888766543 34999999999998 666665
Q ss_pred Eec
Q 004233 140 AAI 142 (766)
Q Consensus 140 ~~~ 142 (766)
..+
T Consensus 97 G~~ 99 (168)
T PF07162_consen 97 GFC 99 (168)
T ss_pred eEE
Confidence 444
Done!